Query 012862
Match_columns 455
No_of_seqs 325 out of 970
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihm_A POL MU, DNA polymerase 100.0 2E-55 6.8E-60 449.9 23.9 215 207-421 14-229 (360)
2 1jms_A Terminal deoxynucleotid 100.0 6.5E-55 2.2E-59 448.7 26.3 215 207-421 33-251 (381)
3 2bcq_A DNA polymerase lambda; 100.0 8.1E-55 2.8E-59 441.5 21.5 224 202-429 5-228 (335)
4 2fmp_A DNA polymerase beta; nu 100.0 3.2E-52 1.1E-56 422.5 23.3 216 209-424 11-232 (335)
5 3b0x_A DNA polymerase beta fam 100.0 7E-40 2.4E-44 353.8 20.1 207 208-422 1-227 (575)
6 2w9m_A Polymerase X; SAXS, DNA 100.0 6.7E-37 2.3E-41 330.7 18.4 195 207-417 7-217 (578)
7 2dun_A POL MU, DNA polymerase 99.9 6.9E-26 2.4E-30 198.3 9.5 98 12-109 4-107 (133)
8 2coe_A Deoxynucleotidyltransfe 99.9 1.1E-23 3.8E-28 182.9 10.0 102 10-111 12-117 (120)
9 2jw5_A DNA polymerase lambda; 99.8 5.1E-21 1.7E-25 163.2 2.6 98 13-111 6-106 (106)
10 1wf6_A Similar to S.pombe -RAD 99.6 1.1E-15 3.8E-20 134.7 10.2 95 12-110 34-128 (132)
11 3pa6_A Microcephalin; BRCT dom 99.6 1.2E-15 4.2E-20 130.1 8.5 91 17-112 6-99 (107)
12 3ii6_X DNA ligase 4; XRCC4, NH 99.5 1.5E-14 5.2E-19 141.6 9.5 94 13-108 159-263 (263)
13 4id3_A DNA repair protein REV1 99.5 3.6E-14 1.2E-18 116.2 8.2 88 13-108 2-91 (92)
14 2ebw_A DNA repair protein REV1 99.5 1.2E-13 4.3E-18 114.6 8.2 91 11-109 5-96 (97)
15 3l3e_A DNA topoisomerase 2-bin 99.4 1.2E-13 4E-18 117.2 6.2 94 15-111 12-105 (107)
16 2d8m_A DNA-repair protein XRCC 99.4 7.5E-13 2.6E-17 116.1 7.6 94 13-112 17-110 (129)
17 2cou_A ECT2 protein; BRCT doma 99.4 3.4E-13 1.2E-17 115.1 4.6 87 17-109 11-97 (109)
18 3l46_A Protein ECT2; alternati 99.3 1.5E-12 5.1E-17 111.8 5.3 88 17-110 20-107 (112)
19 3pc6_A DNA repair protein XRCC 99.3 1.4E-11 4.9E-16 104.3 8.9 89 17-109 6-95 (104)
20 1z56_C DNA ligase IV; DNA repa 99.2 6.4E-12 2.2E-16 122.3 3.3 96 12-108 154-261 (264)
21 1jaj_A DNA polymerase beta-lik 99.1 5E-13 1.7E-17 123.2 -7.0 72 334-421 6-80 (174)
22 2ep8_A Pescadillo homolog 1; A 99.1 9.3E-11 3.2E-15 98.6 7.4 84 12-107 6-100 (100)
23 2kp7_A Crossover junction endo 99.1 2E-10 6.7E-15 94.2 7.8 68 208-276 13-80 (87)
24 2nte_A BARD-1, BRCA1-associate 99.0 1.1E-10 3.6E-15 109.9 5.3 81 26-109 5-87 (210)
25 1t15_A Breast cancer type 1 su 99.0 3.1E-10 1E-14 106.3 5.4 82 25-109 6-92 (214)
26 1l0b_A BRCA1; TANDEM-BRCT, thr 98.9 8.1E-10 2.8E-14 104.8 7.1 90 18-109 4-95 (229)
27 3ef0_A RNA polymerase II subun 98.9 7.7E-10 2.6E-14 113.3 7.1 88 17-108 281-371 (372)
28 3olc_X DNA topoisomerase 2-bin 98.9 1.4E-09 4.8E-14 108.2 8.0 90 16-111 197-287 (298)
29 3pc7_A DNA ligase 3; DNA repai 98.9 1.6E-09 5.5E-14 88.9 5.2 73 16-103 14-87 (88)
30 3ii6_X DNA ligase 4; XRCC4, NH 98.8 8.8E-09 3E-13 100.6 7.6 91 13-109 5-96 (263)
31 3ef1_A RNA polymerase II subun 98.8 6E-09 2E-13 108.6 6.1 88 17-108 351-441 (442)
32 3u3z_A Microcephalin; DNA repa 98.7 9E-09 3.1E-13 96.5 5.5 81 26-109 14-95 (199)
33 1vq8_Y 50S ribosomal protein L 98.7 2.8E-10 9.7E-15 109.9 -5.0 122 296-421 16-169 (241)
34 3sqd_A PAX-interacting protein 98.7 1.9E-08 6.6E-13 95.7 5.9 86 18-109 13-98 (219)
35 3al2_A DNA topoisomerase 2-bin 98.7 3.2E-08 1.1E-12 95.2 7.4 85 20-109 8-94 (235)
36 1kzy_C Tumor suppressor P53-bi 98.7 3.4E-08 1.2E-12 96.3 7.6 94 13-109 10-136 (259)
37 2etx_A Mediator of DNA damage 98.5 6.3E-08 2.2E-12 91.1 6.0 83 18-109 9-91 (209)
38 3olc_X DNA topoisomerase 2-bin 98.5 1.5E-07 5.3E-12 93.5 8.3 85 16-106 103-187 (298)
39 1l0b_A BRCA1; TANDEM-BRCT, thr 98.5 1.4E-07 4.8E-12 89.2 7.1 93 16-109 115-213 (229)
40 2vxb_A DNA repair protein RHP9 98.4 2.6E-07 9E-12 89.1 6.2 90 18-110 2-118 (241)
41 1t15_A Breast cancer type 1 su 98.4 2.6E-07 9.1E-12 86.1 5.3 94 15-109 112-211 (214)
42 1kzy_C Tumor suppressor P53-bi 98.3 5.3E-07 1.8E-11 87.8 6.0 87 16-106 153-249 (259)
43 1z56_C DNA ligase IV; DNA repa 98.3 1.1E-07 3.8E-12 92.2 -0.1 90 16-110 3-102 (264)
44 3l41_A BRCT-containing protein 98.2 5.5E-07 1.9E-11 85.8 3.6 66 40-109 22-87 (220)
45 3u3z_A Microcephalin; DNA repa 98.1 1.6E-06 5.4E-11 81.2 4.8 82 16-109 117-198 (199)
46 2vxb_A DNA repair protein RHP9 98.0 4.9E-06 1.7E-10 80.1 6.5 80 16-103 149-241 (241)
47 2etx_A Mediator of DNA damage 98.0 1.1E-05 3.9E-10 75.6 7.1 89 17-111 114-204 (209)
48 2nte_A BARD-1, BRCA1-associate 97.9 8.8E-06 3E-10 76.1 4.5 85 16-104 102-209 (210)
49 2edu_A Kinesin-like protein KI 97.8 1.7E-05 5.8E-10 65.9 4.3 57 252-322 38-95 (98)
50 2k6g_A Replication factor C su 97.8 0.00012 4.1E-09 62.2 9.3 80 15-98 29-108 (109)
51 2cok_A Poly [ADP-ribose] polym 97.7 8.3E-05 2.8E-09 63.6 7.0 80 16-98 8-87 (113)
52 1l7b_A DNA ligase; BRCT, autos 97.6 7E-05 2.4E-09 61.7 5.8 77 15-97 4-80 (92)
53 2ebu_A Replication factor C su 97.5 0.00028 9.6E-09 60.2 7.8 80 14-97 18-97 (112)
54 3al2_A DNA topoisomerase 2-bin 97.4 0.00015 5E-09 69.5 5.9 91 16-109 133-229 (235)
55 2duy_A Competence protein come 97.4 4.3E-05 1.5E-09 60.1 1.5 46 253-313 26-71 (75)
56 3arc_U Photosystem II 12 kDa e 97.2 0.00038 1.3E-08 57.9 4.8 48 251-313 23-70 (97)
57 1s5l_U Photosystem II 12 kDa e 97.1 0.00053 1.8E-08 59.9 5.1 47 252-313 61-107 (134)
58 2l42_A DNA-binding protein RAP 96.8 0.0011 3.7E-08 54.9 4.6 84 16-111 9-97 (106)
59 1x2i_A HEF helicase/nuclease; 96.8 0.0027 9.4E-08 49.0 6.6 51 254-313 14-64 (75)
60 2i5h_A Hypothetical protein AF 96.6 0.0017 5.7E-08 60.5 4.9 44 251-305 129-172 (205)
61 3sqd_A PAX-interacting protein 96.5 0.0069 2.3E-07 57.2 8.5 85 16-108 120-218 (219)
62 2owo_A DNA ligase; protein-DNA 96.5 0.0057 1.9E-07 66.8 8.8 87 254-350 480-568 (671)
63 1ixr_A Holliday junction DNA h 96.5 0.0021 7.2E-08 59.7 4.6 53 255-313 73-125 (191)
64 2duy_A Competence protein come 96.5 0.0023 7.8E-08 50.1 4.1 47 293-345 25-72 (75)
65 1dgs_A DNA ligase; AMP complex 96.4 0.0036 1.2E-07 68.3 6.9 115 254-378 475-600 (667)
66 1kft_A UVRC, excinuclease ABC 96.4 0.002 6.7E-08 50.9 3.6 51 254-313 24-74 (78)
67 2ztd_A Holliday junction ATP-d 96.3 0.0028 9.5E-08 59.8 4.6 54 254-313 88-141 (212)
68 1z00_A DNA excision repair pro 96.3 0.0045 1.5E-07 50.0 5.2 51 254-313 19-69 (89)
69 3arc_U Photosystem II 12 kDa e 96.2 0.0018 6E-08 53.8 2.2 49 293-347 24-73 (97)
70 2a1j_B DNA excision repair pro 96.2 0.005 1.7E-07 50.0 5.0 51 254-313 32-82 (91)
71 1cuk_A RUVA protein; DNA repai 96.2 0.0029 9.9E-08 59.3 3.9 53 255-313 74-126 (203)
72 2a1j_B DNA excision repair pro 95.8 0.0058 2E-07 49.6 3.5 52 290-342 27-80 (91)
73 1z00_A DNA excision repair pro 95.7 0.0088 3E-07 48.2 4.1 51 291-342 15-67 (89)
74 3bqs_A Uncharacterized protein 95.4 0.0087 3E-07 49.2 3.2 31 296-326 5-35 (93)
75 1x2i_A HEF helicase/nuclease; 95.2 0.0092 3.2E-07 46.0 2.5 49 293-342 12-62 (75)
76 1kft_A UVRC, excinuclease ABC 95.1 0.0045 1.5E-07 48.8 0.5 50 293-343 22-73 (78)
77 2bgw_A XPF endonuclease; hydro 95.1 0.021 7.2E-07 53.5 5.1 50 255-313 163-212 (219)
78 4b21_A Probable DNA-3-methylad 94.7 0.2 6.8E-06 47.6 10.9 62 254-316 107-171 (232)
79 2a1j_A DNA repair endonuclease 94.6 0.029 9.8E-07 42.6 3.9 30 295-325 4-33 (63)
80 4glx_A DNA ligase; inhibitor, 94.6 0.03 1E-06 60.3 5.5 84 254-347 480-565 (586)
81 1s5l_U Photosystem II 12 kDa e 94.6 0.032 1.1E-06 48.7 4.7 40 293-338 61-101 (134)
82 3l41_A BRCT-containing protein 94.5 0.067 2.3E-06 50.4 7.1 89 16-105 111-210 (220)
83 3qbz_A DDK kinase regulatory s 94.5 0.027 9.2E-07 50.4 3.9 48 17-64 57-115 (160)
84 2w9m_A Polymerase X; SAXS, DNA 94.5 0.024 8.1E-07 61.0 4.3 54 252-312 95-148 (578)
85 3oq0_A DBF4, protein DNA52; DD 94.4 0.055 1.9E-06 48.1 5.8 47 19-65 22-78 (151)
86 3mab_A Uncharacterized protein 94.3 0.029 9.9E-07 46.1 3.6 31 296-326 5-35 (93)
87 3s6i_A DNA-3-methyladenine gly 94.2 0.069 2.3E-06 50.7 6.5 62 254-316 96-160 (228)
88 1u9l_A Transcription elongatio 94.2 0.029 9.9E-07 43.7 3.0 53 292-344 3-57 (70)
89 1z00_B DNA repair endonuclease 94.1 0.048 1.7E-06 43.9 4.4 35 290-325 13-47 (84)
90 3fhg_A Mjogg, N-glycosylase/DN 94.1 0.1 3.5E-06 48.6 7.3 123 238-364 50-185 (207)
91 2ztd_A Holliday junction ATP-d 93.9 0.018 6.1E-07 54.3 1.7 52 291-342 84-139 (212)
92 3oq4_A DBF4, protein DNA52; DD 93.8 0.11 3.7E-06 45.3 6.3 49 17-65 3-61 (134)
93 2i5h_A Hypothetical protein AF 93.8 0.047 1.6E-06 50.8 4.3 52 293-344 130-187 (205)
94 2owo_A DNA ligase; protein-DNA 93.8 0.012 4.1E-07 64.3 0.2 50 298-347 449-501 (671)
95 1vq8_Y 50S ribosomal protein L 93.6 0.012 4.3E-07 56.4 0.0 54 253-314 14-67 (241)
96 1dgs_A DNA ligase; AMP complex 93.6 0.012 4E-07 64.4 -0.3 61 299-359 445-508 (667)
97 1ixr_A Holliday junction DNA h 93.6 0.023 7.9E-07 52.7 1.7 52 291-342 68-123 (191)
98 3b0x_A DNA polymerase beta fam 93.5 0.045 1.5E-06 58.7 4.1 64 252-322 91-154 (575)
99 4gfj_A Topoisomerase V; helix- 93.2 0.061 2.1E-06 55.1 4.3 48 294-342 467-524 (685)
100 1cuk_A RUVA protein; DNA repai 93.2 0.028 9.7E-07 52.5 1.7 52 291-342 69-124 (203)
101 1wcn_A Transcription elongatio 93.0 0.054 1.8E-06 42.1 2.7 29 297-325 9-37 (70)
102 3nyb_A Poly(A) RNA polymerase 92.9 0.28 9.4E-06 48.8 8.5 65 354-418 45-111 (323)
103 4dez_A POL IV 1, DNA polymeras 92.1 0.097 3.3E-06 52.5 4.1 39 298-336 181-219 (356)
104 2a1j_A DNA repair endonuclease 91.8 0.19 6.5E-06 38.0 4.4 49 254-313 4-53 (63)
105 1b22_A DNA repair protein RAD5 91.4 0.069 2.4E-06 45.4 1.8 49 293-342 24-74 (114)
106 3i0w_A 8-oxoguanine-DNA-glycos 91.2 0.47 1.6E-05 46.4 7.8 58 254-314 170-230 (290)
107 2va8_A SSO2462, SKI2-type heli 91.2 0.12 4.2E-06 56.1 4.0 39 284-323 647-685 (715)
108 2yg9_A DNA-3-methyladenine gly 91.0 0.37 1.3E-05 45.4 6.6 60 254-315 104-166 (225)
109 3c65_A Uvrabc system protein C 90.8 0.037 1.3E-06 52.6 -0.6 50 254-313 173-222 (226)
110 3osn_A DNA polymerase IOTA; ho 90.7 0.16 5.4E-06 52.4 4.0 40 297-336 236-275 (420)
111 1ylq_A Putative nucleotidyltra 90.5 0.57 1.9E-05 37.9 6.4 56 365-421 14-73 (96)
112 3sgi_A DNA ligase; HET: DNA AM 90.4 0.051 1.7E-06 58.7 0.0 89 254-352 491-587 (615)
113 3n0u_A Probable N-glycosylase/ 90.4 0.14 4.7E-06 48.4 3.0 93 264-364 100-197 (219)
114 4e8f_A Poly(A) RNA polymerase 90.3 0.48 1.6E-05 48.6 7.1 61 354-414 68-129 (405)
115 1jx4_A DNA polymerase IV (fami 90.2 0.12 4.2E-06 51.7 2.6 29 297-325 180-208 (352)
116 2zj8_A DNA helicase, putative 90.1 0.11 3.8E-06 56.6 2.4 56 286-342 638-695 (720)
117 3gqc_A DNA repair protein REV1 90.0 0.19 6.4E-06 53.2 3.9 40 297-336 317-356 (504)
118 2edu_A Kinesin-like protein KI 89.7 0.28 9.5E-06 40.1 4.0 43 294-342 39-86 (98)
119 4glx_A DNA ligase; inhibitor, 89.2 0.076 2.6E-06 57.2 0.2 49 298-346 449-500 (586)
120 2jhn_A ALKA, 3-methyladenine D 89.2 0.39 1.3E-05 47.1 5.3 60 254-317 173-232 (295)
121 1no5_A Hypothetical protein HI 89.0 1.5 5.1E-05 36.5 8.1 63 346-413 9-72 (114)
122 3t7k_A RTT107, regulator of TY 89.0 0.29 9.9E-06 47.0 4.0 67 40-109 40-119 (256)
123 3bq0_A POL IV, DBH, DNA polyme 88.9 0.15 5E-06 51.1 2.0 30 297-326 181-210 (354)
124 3pzp_A DNA polymerase kappa; D 88.7 0.23 7.7E-06 52.7 3.4 113 297-430 340-455 (517)
125 1im4_A DBH; DNA polymerase PAL 88.6 0.17 5.7E-06 47.6 2.1 29 297-325 186-214 (221)
126 3bzc_A TEX; helix-turn-helix, 88.5 0.4 1.4E-05 53.2 5.3 51 252-314 506-557 (785)
127 1z00_B DNA repair endonuclease 88.4 0.47 1.6E-05 38.0 4.3 50 254-314 18-68 (84)
128 2bgw_A XPF endonuclease; hydro 87.9 0.29 9.9E-06 45.6 3.2 49 293-342 160-210 (219)
129 3huf_A DNA repair and telomere 87.9 0.27 9.3E-06 48.9 3.1 58 36-97 126-187 (325)
130 2h56_A DNA-3-methyladenine gly 87.6 0.78 2.7E-05 43.4 6.1 60 254-315 96-158 (233)
131 4ecq_A DNA polymerase ETA; tra 87.5 0.34 1.2E-05 50.1 3.8 114 297-429 255-378 (435)
132 2aq4_A DNA repair protein REV1 87.4 0.31 1.1E-05 50.3 3.4 29 297-325 243-273 (434)
133 4fh3_A Poly(A) RNA polymerase 87.2 1.4 4.7E-05 43.7 7.9 61 355-415 41-102 (349)
134 2p6r_A Afuhel308 helicase; pro 86.9 0.48 1.6E-05 51.4 4.7 42 284-326 622-663 (702)
135 4f4y_A POL IV, DNA polymerase 86.8 0.2 6.8E-06 50.6 1.5 30 297-326 181-210 (362)
136 3c1y_A DNA integrity scanning 85.6 0.39 1.3E-05 48.8 2.9 56 288-344 308-365 (377)
137 3im1_A Protein SNU246, PRE-mRN 85.6 2.2 7.4E-05 42.1 8.3 28 297-324 159-186 (328)
138 3vdp_A Recombination protein R 84.3 0.52 1.8E-05 44.2 2.8 23 291-313 22-44 (212)
139 3c65_A Uvrabc system protein C 84.1 0.2 6.9E-06 47.5 0.0 49 294-344 172-222 (226)
140 2nrt_A Uvrabc system protein C 83.8 0.81 2.8E-05 43.2 4.0 31 294-325 167-197 (220)
141 1wcn_A Transcription elongatio 83.3 1 3.5E-05 34.7 3.7 52 254-313 7-58 (70)
142 1vdd_A Recombination protein R 82.6 0.66 2.2E-05 43.9 2.8 23 291-313 8-30 (228)
143 1t94_A Polymerase (DNA directe 82.1 0.9 3.1E-05 47.2 4.0 40 297-337 284-323 (459)
144 1kea_A Possible G-T mismatches 81.6 0.97 3.3E-05 42.3 3.6 23 292-314 112-134 (221)
145 3fhf_A Mjogg, N-glycosylase/DN 81.0 1.7 5.7E-05 40.8 5.0 95 264-365 94-193 (214)
146 1exn_A 5'-exonuclease, 5'-nucl 80.5 0.78 2.7E-05 45.0 2.7 26 299-325 207-232 (290)
147 2rff_A Putative nucleotidyltra 80.4 4 0.00014 33.9 6.7 41 354-395 19-61 (111)
148 2q0z_X Protein Pro2281; SEC63, 80.4 3 0.0001 41.3 7.0 28 297-324 163-190 (339)
149 2nrt_A Uvrabc system protein C 80.0 1.3 4.4E-05 41.8 3.9 49 254-313 168-217 (220)
150 1wot_A Putative minimal nucleo 79.8 2.7 9.2E-05 34.0 5.3 57 354-412 12-69 (98)
151 3n5n_X A/G-specific adenine DN 79.7 3.9 0.00013 40.0 7.3 21 294-314 127-148 (287)
152 3sgi_A DNA ligase; HET: DNA AM 79.4 0.38 1.3E-05 52.0 0.0 67 295-362 458-533 (615)
153 3bqs_A Uncharacterized protein 78.9 1.7 5.7E-05 35.5 3.7 56 252-313 2-57 (93)
154 3q8k_A Flap endonuclease 1; he 78.7 0.97 3.3E-05 45.3 2.8 26 299-325 236-261 (341)
155 1kg2_A A/G-specific adenine gl 78.4 1.3 4.3E-05 41.6 3.3 22 293-314 107-128 (225)
156 1q79_A Poly(A) polymerase alph 78.1 2.6 8.9E-05 44.5 5.9 53 366-418 92-145 (514)
157 2xhi_A N-glycosylase/DNA lyase 77.6 2.7 9.3E-05 42.3 5.7 58 256-315 211-273 (360)
158 3psf_A Transcription elongatio 77.2 1.7 5.9E-05 49.6 4.5 47 254-312 717-765 (1030)
159 2ikf_A RNA uridylyl transferas 77.2 2.4 8.2E-05 42.4 5.1 61 354-418 56-133 (353)
160 2hhp_A Poly(A) polymerase; tem 76.7 4.3 0.00015 43.0 7.1 51 368-418 81-132 (530)
161 1pu6_A 3-methyladenine DNA gly 76.3 1.3 4.4E-05 41.5 2.7 25 292-316 118-142 (218)
162 1kg2_A A/G-specific adenine gl 74.1 4.4 0.00015 37.8 5.8 66 232-304 85-152 (225)
163 1jx4_A DNA polymerase IV (fami 73.8 3.9 0.00013 40.6 5.6 65 236-318 168-234 (352)
164 4gns_A Chitin biosynthesis pro 73.6 1.6 5.3E-05 39.8 2.4 69 39-110 183-255 (290)
165 3qe9_Y Exonuclease 1; exonucle 73.5 1.8 6.2E-05 43.5 3.1 27 298-324 228-255 (352)
166 3psi_A Transcription elongatio 72.9 2.6 8.8E-05 49.0 4.5 47 254-312 714-762 (1219)
167 4f92_B U5 small nuclear ribonu 72.5 4.4 0.00015 48.9 6.6 29 297-325 1559-1587(1724)
168 2abk_A Endonuclease III; DNA-r 72.0 2.8 9.4E-05 38.8 3.8 23 292-314 106-128 (211)
169 1rxw_A Flap structure-specific 71.9 1.8 6.1E-05 43.0 2.6 26 299-325 239-264 (336)
170 1a76_A Flap endonuclease-1 pro 71.4 2 6.7E-05 42.5 2.8 25 299-325 229-254 (326)
171 2bcq_A DNA polymerase lambda; 71.2 1 3.6E-05 44.9 0.7 50 294-343 56-113 (335)
172 1kea_A Possible G-T mismatches 70.5 4.5 0.00015 37.7 4.9 56 218-273 76-134 (221)
173 3gqc_A DNA repair protein REV1 70.0 5.2 0.00018 42.1 5.7 53 256-318 317-371 (504)
174 1ci4_A Protein (barrier-TO-aut 69.8 3.6 0.00012 33.3 3.4 29 296-324 19-47 (89)
175 3psf_A Transcription elongatio 69.0 2.2 7.7E-05 48.7 2.9 43 293-341 715-763 (1030)
176 2fmp_A DNA polymerase beta; nu 68.6 1.9 6.3E-05 43.1 1.9 47 296-342 58-114 (335)
177 1z3e_B DNA-directed RNA polyme 68.3 5.7 0.0002 30.8 4.3 23 254-276 41-63 (73)
178 2ihm_A POL MU, DNA polymerase 68.0 1.6 5.5E-05 44.0 1.3 46 297-342 63-118 (360)
179 3vdp_A Recombination protein R 67.9 2.5 8.4E-05 39.6 2.4 39 247-285 18-57 (212)
180 3n5n_X A/G-specific adenine DN 67.7 4.5 0.00015 39.5 4.4 66 232-304 104-172 (287)
181 3ory_A Flap endonuclease 1; hy 67.5 1.8 6E-05 43.8 1.5 24 299-324 255-279 (363)
182 3bzc_A TEX; helix-turn-helix, 67.3 3.4 0.00012 45.9 3.8 45 293-343 506-555 (785)
183 1pzn_A RAD51, DNA repair and r 67.2 1.5 5.2E-05 43.6 1.0 30 296-325 36-65 (349)
184 2izo_A FEN1, flap structure-sp 67.2 1.9 6.7E-05 43.0 1.7 26 299-325 238-263 (346)
185 2b4v_A RNA editing complex pro 67.1 5.7 0.0002 41.4 5.3 83 331-413 17-109 (468)
186 4e9f_A Methyl-CPG-binding doma 67.1 2.2 7.4E-05 38.2 1.8 23 252-274 102-124 (161)
187 3c1y_A DNA integrity scanning 66.7 1.8 6.3E-05 43.9 1.4 17 297-313 349-365 (377)
188 3fsp_A A/G-specific adenine gl 66.4 5.1 0.00017 40.1 4.7 66 232-304 94-161 (369)
189 3mab_A Uncharacterized protein 65.9 2.8 9.7E-05 34.1 2.1 42 252-297 2-43 (93)
190 1ul1_X Flap endonuclease-1; pr 65.5 3 0.0001 42.2 2.7 31 294-325 225-261 (379)
191 1orn_A Endonuclease III; DNA r 64.6 7.6 0.00026 36.3 5.2 42 232-273 89-132 (226)
192 1b22_A DNA repair protein RAD5 63.8 3.5 0.00012 34.8 2.4 63 252-323 24-93 (114)
193 3r8n_M 30S ribosomal protein S 63.1 5.2 0.00018 33.8 3.3 25 293-317 14-39 (114)
194 1b43_A Protein (FEN-1); nuclea 62.9 3.7 0.00013 40.7 2.8 26 299-325 241-266 (340)
195 3psi_A Transcription elongatio 62.8 3.3 0.00011 48.1 2.7 45 293-343 712-762 (1219)
196 2abk_A Endonuclease III; DNA-r 62.5 7.1 0.00024 36.0 4.5 57 218-274 70-129 (211)
197 1px5_A 2'-5'-oligoadenylate sy 62.3 11 0.00037 37.4 6.1 25 370-394 56-82 (349)
198 1mpg_A ALKA, 3-methyladenine D 62.3 7.7 0.00026 37.4 4.9 25 290-314 202-226 (282)
199 1z3e_B DNA-directed RNA polyme 61.8 2.3 8E-05 33.1 0.9 44 301-344 14-59 (73)
200 4dez_A POL IV 1, DNA polymeras 61.5 11 0.00036 37.5 5.9 53 256-318 180-234 (356)
201 3fhg_A Mjogg, N-glycosylase/DN 61.0 3.7 0.00012 38.0 2.2 22 252-273 115-136 (207)
202 3k4g_A DNA-directed RNA polyme 59.4 11 0.00036 30.3 4.3 23 254-276 44-66 (86)
203 3u5c_S 40S ribosomal protein S 59.3 5 0.00017 35.4 2.7 25 293-317 28-53 (146)
204 1orn_A Endonuclease III; DNA r 58.9 7.5 0.00026 36.4 4.0 23 292-314 110-132 (226)
205 1gm5_A RECG; helicase, replica 58.9 3.3 0.00011 46.0 1.7 27 297-323 117-143 (780)
206 1vdd_A Recombination protein R 58.4 4.3 0.00015 38.3 2.2 131 254-390 12-181 (228)
207 4gfj_A Topoisomerase V; helix- 58.4 8.2 0.00028 39.8 4.3 56 256-323 470-525 (685)
208 3k4g_A DNA-directed RNA polyme 57.8 3.3 0.00011 33.3 1.1 42 302-343 18-61 (86)
209 3osn_A DNA polymerase IOTA; ho 57.6 11 0.00036 38.7 5.2 53 256-318 236-290 (420)
210 1jms_A Terminal deoxynucleotid 57.6 3.3 0.00011 42.1 1.3 46 297-342 82-137 (381)
211 3gfk_B DNA-directed RNA polyme 57.1 3.1 0.00011 32.9 0.8 43 302-344 22-66 (79)
212 3gfk_B DNA-directed RNA polyme 56.8 11 0.00038 29.7 4.0 23 254-276 48-70 (79)
213 3mfi_A DNA polymerase ETA; DNA 56.6 3.1 0.00011 44.0 1.0 27 297-323 309-339 (520)
214 2xhi_A N-glycosylase/DNA lyase 56.5 11 0.00039 37.7 5.1 51 223-273 210-272 (360)
215 3i0w_A 8-oxoguanine-DNA-glycos 56.4 12 0.00041 36.3 5.1 50 228-278 176-234 (290)
216 1pu6_A 3-methyladenine DNA gly 56.0 9.3 0.00032 35.5 4.1 42 232-273 93-140 (218)
217 1kny_A Kntase, kanamycin nucle 55.6 10 0.00035 35.8 4.4 50 346-395 7-59 (253)
218 4ecq_A DNA polymerase ETA; tra 55.2 13 0.00043 38.2 5.3 54 256-318 255-310 (435)
219 2i1q_A DNA repair and recombin 53.9 6.4 0.00022 38.1 2.7 29 297-325 5-33 (322)
220 1r89_A TRNA nucleotidyltransfe 53.6 12 0.00041 38.7 4.8 29 369-397 40-70 (437)
221 3iz6_M 40S ribosomal protein S 53.1 8.9 0.0003 34.0 3.2 25 293-317 26-51 (152)
222 3bq0_A POL IV, DBH, DNA polyme 53.0 13 0.00043 36.9 4.7 53 256-318 181-235 (354)
223 2fcl_A Hypothetical protein TM 52.9 12 0.00041 33.4 4.1 71 367-451 32-106 (169)
224 2ziu_A MUS81 protein; helix-ha 52.5 10 0.00034 37.0 3.9 59 254-314 237-303 (311)
225 3j20_O 30S ribosomal protein S 52.5 9.2 0.00031 33.7 3.2 25 293-317 21-46 (148)
226 1mpg_A ALKA, 3-methyladenine D 51.3 15 0.00052 35.3 4.9 53 225-278 170-230 (282)
227 4ebj_A Aminoglycoside nucleoti 51.0 15 0.00052 35.3 4.7 48 347-395 18-68 (272)
228 2xzm_M RPS18E; ribosome, trans 50.3 10 0.00036 33.7 3.2 25 293-317 28-53 (155)
229 2h56_A DNA-3-methyladenine gly 49.7 9.4 0.00032 35.8 3.0 42 232-273 107-157 (233)
230 4b21_A Probable DNA-3-methylad 49.7 13 0.00045 34.9 4.1 42 232-273 118-169 (232)
231 4f4y_A POL IV, DNA polymerase 48.9 13 0.00046 37.0 4.2 53 256-318 181-235 (362)
232 2zc2_A DNAD-like replication p 48.4 9.4 0.00032 29.3 2.4 19 305-323 59-77 (78)
233 3ci0_K Pseudopilin GSPK; gener 48.2 4.3 0.00015 39.6 0.4 75 249-325 153-235 (298)
234 2vqe_M 30S ribosomal protein S 47.7 7.1 0.00024 33.5 1.7 25 293-317 15-40 (126)
235 2csb_A Topoisomerase V, TOP61; 47.6 24 0.00082 34.2 5.4 83 269-353 387-483 (519)
236 4e9f_A Methyl-CPG-binding doma 47.6 7.9 0.00027 34.5 2.0 42 259-312 78-121 (161)
237 2aq4_A DNA repair protein REV1 47.3 16 0.00054 37.4 4.6 55 256-318 243-300 (434)
238 3hj4_A Minor editosome-associa 45.6 27 0.00092 35.4 5.8 40 357-396 34-74 (384)
239 3fsp_A A/G-specific adenine gl 45.3 23 0.00077 35.3 5.2 22 293-314 116-137 (369)
240 2yg9_A DNA-3-methyladenine gly 44.7 21 0.00071 33.3 4.5 42 232-273 115-165 (225)
241 2i1q_A DNA repair and recombin 44.7 33 0.0011 32.9 6.2 62 254-323 3-71 (322)
242 1coo_A RNA polymerase alpha su 43.9 20 0.00069 29.4 3.7 23 254-276 56-78 (98)
243 3e1s_A Exodeoxyribonuclease V, 42.9 5.6 0.00019 42.4 0.3 53 293-346 10-64 (574)
244 3s6i_A DNA-3-methyladenine gly 40.9 23 0.00077 33.1 4.2 42 232-273 107-158 (228)
245 1t94_A Polymerase (DNA directe 40.8 32 0.0011 35.3 5.7 52 256-318 284-337 (459)
246 3fhf_A Mjogg, N-glycosylase/DN 37.4 19 0.00065 33.5 3.0 21 253-273 123-144 (214)
247 2va8_A SSO2462, SKI2-type heli 36.8 1.8E+02 0.0061 31.0 11.1 49 254-313 657-705 (715)
248 2z43_A DNA repair and recombin 35.8 7.7 0.00026 37.8 0.0 47 297-343 14-62 (324)
249 3im1_A Protein SNU246, PRE-mRN 35.4 2.7E+02 0.0093 26.8 11.3 52 254-313 157-208 (328)
250 3mfi_A DNA polymerase ETA; DNA 35.2 15 0.00051 38.7 2.1 59 256-318 309-390 (520)
251 3n0u_A Probable N-glycosylase/ 34.4 14 0.00048 34.5 1.5 21 253-273 128-149 (219)
252 1ci4_A Protein (barrier-TO-aut 33.0 93 0.0032 25.0 5.9 57 254-313 18-79 (89)
253 3pkr_A FLIG, flagellar motor s 32.6 1.3E+02 0.0045 28.9 8.2 87 236-323 87-188 (279)
254 3pq1_A Poly(A) RNA polymerase; 32.3 69 0.0024 33.2 6.5 41 355-395 159-200 (464)
255 3e1s_A Exodeoxyribonuclease V, 32.1 9.2 0.00031 40.7 -0.2 50 261-318 18-68 (574)
256 2i5u_A DNAD domain protein; st 30.9 21 0.00072 27.8 1.8 19 305-323 64-82 (83)
257 2zix_A Crossover junction endo 30.8 7.5 0.00026 37.9 -1.0 59 254-314 233-299 (307)
258 1coo_A RNA polymerase alpha su 29.6 7.9 0.00027 31.8 -0.9 45 299-343 27-73 (98)
259 3bbn_M Ribosomal protein S13; 28.6 5.7 0.00019 34.9 -2.1 22 295-316 62-84 (145)
260 2jhn_A ALKA, 3-methyladenine D 27.3 22 0.00075 34.4 1.6 21 253-273 209-229 (295)
261 2kp7_A Crossover junction endo 26.7 37 0.0013 27.0 2.6 21 293-313 56-76 (87)
262 2csb_A Topoisomerase V, TOP61; 26.4 2E+02 0.0069 27.7 8.1 65 233-311 399-463 (519)
263 3pzp_A DNA polymerase kappa; D 25.4 78 0.0027 33.1 5.6 52 256-318 340-393 (517)
264 2kz3_A Putative uncharacterize 24.6 53 0.0018 25.9 3.1 52 300-361 9-60 (83)
265 2ziu_A MUS81 protein; helix-ha 24.3 43 0.0015 32.4 3.1 34 291-325 233-266 (311)
266 3k7d_A Glutamate-ammonia-ligas 23.3 98 0.0034 32.3 5.8 28 368-395 234-262 (498)
267 3lda_A DNA repair protein RAD5 20.1 45 0.0015 33.7 2.3 53 298-350 119-179 (400)
268 2zj8_A DNA helicase, putative 20.1 5.1E+02 0.017 27.5 10.9 52 254-313 646-697 (720)
No 1
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=100.00 E-value=2e-55 Score=449.88 Aligned_cols=215 Identities=29% Similarity=0.530 Sum_probs=206.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 012862 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (455)
Q Consensus 207 ~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (455)
.++|++|+++|++||++|++.|+.||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||+++++|+|+
T Consensus 14 ~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~ 93 (360)
T 2ihm_A 14 THHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVR 93 (360)
T ss_dssp SCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHh
Confidence 57899999999999999999996699999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh-ccCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHHhhhc
Q 012862 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (455)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~-~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~~ 365 (455)
+++.+..+..|++|||||||||++||++||+||+||+. .++|+..|++|++||+|+.+||||+||++++++|.+.+..+
T Consensus 94 ~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~ 173 (360)
T 2ihm_A 94 CSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQT 173 (360)
T ss_dssp HSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhc
Confidence 98888899999999999999999999999999999994 35899999999999999999999999999999999998889
Q ss_pred CCCeEEEEecccccCCCCCCCccEEEeCCCchhhhhhHHHHHHHHHHcCceeeeec
Q 012862 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421 (455)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~ 421 (455)
.|++.|++||||||||++||||||||||+++..+.++|.+|++.|++.|+|++.+.
T Consensus 174 ~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~ll~~v~~~L~~~~~i~~~~~ 229 (360)
T 2ihm_A 174 LPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVLYHQY 229 (360)
T ss_dssp CTTCEEEECHHHHTTCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEccccccCCCccCCeEEEEecCChhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999889999999999999999998654
No 2
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=100.00 E-value=6.5e-55 Score=448.75 Aligned_cols=215 Identities=27% Similarity=0.479 Sum_probs=205.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 012862 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (455)
Q Consensus 207 ~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (455)
+++|++|+++|++||++|++.|+.||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++++||+|+
T Consensus 33 ~~~N~~i~~~L~~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~ 112 (381)
T 1jms_A 33 NNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 112 (381)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHh
Confidence 58899999999999999999996699999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh-c-cCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHHhhh
Q 012862 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-E-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (455)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~-~-~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~ 364 (455)
+++.+..+..|++|||||||||++||++||+||+||++ . .+++..|++|++||+|+.+||||+||++++++|.+.+..
T Consensus 113 ~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~ 192 (381)
T 1jms_A 113 NDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVT 192 (381)
T ss_dssp HCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999995 3 379999999999999999999999999999999999888
Q ss_pred cCCCeEEEEecccccCCCCCCCccEEEeCCCchhhhh--hHHHHHHHHHHcCceeeeec
Q 012862 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG--FLSKYVKKLKEMKFLREDLI 421 (455)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~~--~l~~lv~~L~~~g~l~~~L~ 421 (455)
+.|++.|++||||||||++||||||||+|+++..+.+ +|.+|++.|++.|+|++.+.
T Consensus 193 ~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~~~~ 251 (381)
T 1jms_A 193 FLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDI 251 (381)
T ss_dssp HCTTCEEEECHHHHTTCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCcEEEEccccccCCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999987777 99999999999999988654
No 3
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=100.00 E-value=8.1e-55 Score=441.47 Aligned_cols=224 Identities=37% Similarity=0.682 Sum_probs=207.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchh
Q 012862 202 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281 (455)
Q Consensus 202 ~~~~~~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (455)
++.+++|+|++|+++|++||++|++.|++||++||++||++|+++|++|++++++.+|||||+++|++|.||++||++.+
T Consensus 5 ~~~~~~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~ 84 (335)
T 2bcq_A 5 SSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRK 84 (335)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGG
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHcCccHhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchH
Confidence 33466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHH
Q 012862 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (455)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~ 361 (455)
+|+|+.+.| ++++|++|||||||||++||++||+||+||+++.+++..|++|++||+|+.+||||+||+++++.|.+.
T Consensus 85 le~l~~~~p--~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~ 162 (335)
T 2bcq_A 85 LDHISESVP--VLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKA 162 (335)
T ss_dssp GGGCCTTHH--HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHH
T ss_pred HHHHhhhhH--HHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHH
Confidence 999976544 999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCeEEEEecccccCCCCCCCccEEEeCCCchhhhhhHHHHHHHHHHcCceeeeecccccCCcc
Q 012862 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEET 429 (455)
Q Consensus 362 ~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~~ 429 (455)
+..+.|++.+++||||||||++||||||||+|+++.++.++|.+|++.|++.|+|+++|.. |..+|
T Consensus 163 l~~~~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~--~~~~g 228 (335)
T 2bcq_A 163 AQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVS--QEENG 228 (335)
T ss_dssp HHTTCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEEC--CTTST
T ss_pred HHhcCCCcEEEEccccccCCCCCCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhc--cccCC
Confidence 8888999999999999999999999999999999998999999999999999999999874 34445
No 4
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=100.00 E-value=3.2e-52 Score=422.53 Aligned_cols=216 Identities=39% Similarity=0.679 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHh
Q 012862 209 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287 (455)
Q Consensus 209 ~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~ 287 (455)
+|++|+++|++||++|++.|+| ||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++++||+|++
T Consensus 11 ~N~~i~~~L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~ 90 (335)
T 2fmp_A 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ 90 (335)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHc
Confidence 6999999999999999988887 899999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh-ccCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHHhhhcC
Q 012862 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 366 (455)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~-~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~~~ 366 (455)
++.+..+..|++|||||||||++||++||+||+||++ +++|+..|++|++||+|+.+||||+||+++++.|.+.+..+.
T Consensus 91 ~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~ 170 (335)
T 2fmp_A 91 DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD 170 (335)
T ss_dssp CHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHhcC
Confidence 9878899999999999999999999999999999997 688999999999999999999999999999999999888899
Q ss_pred CCeEEEEecccccCCCCCCCccEEEeCCCchhhh----hhHHHHHHHHHHcCceeeeecccc
Q 012862 367 PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFST 424 (455)
Q Consensus 367 p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~----~~l~~lv~~L~~~g~l~~~L~~~~ 424 (455)
|++.+++||||||||++||||||||+|++..++. +++.+|++.|++.|+|+++|..+.
T Consensus 171 ~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~ 232 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGE 232 (335)
T ss_dssp TTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECS
T ss_pred CCcEEEeccccccccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCC
Confidence 9999999999999999999999999999876655 789999999999999999998654
No 5
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=100.00 E-value=7e-40 Score=353.84 Aligned_cols=207 Identities=28% Similarity=0.355 Sum_probs=188.9
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh-----hcCCCCCCHHHHHHHHHHHHhCCchh
Q 012862 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIGKSMQDHIQEIVTTGKLSK 281 (455)
Q Consensus 208 ~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~L~~l~~~i~s~~~-----l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (455)
|+|++|+++|++||++|++.|+| ||++||+|||++|+++|++|+++.+ +.+|||||++++.+|.|+++||.+..
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l 80 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK 80 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHH
Confidence 57999999999999999999998 8999999999999999999999966 99999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhc---cCchhhhhh----------chhhHhhhccCcC
Q 012862 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE---DSLTHSQRL----------GLKYFDDIKTRIP 347 (455)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~---~~L~~~q~~----------Glk~~ed~~~~i~ 347 (455)
++.+..+++. .+.+|++|+|||||+|.+||.. |++|++||+++ +.|+++++| ||++|+++.+|||
T Consensus 81 ~~~~~~~~~~-~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 81 HEELSRKVPR-GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp HHHHHHHSCH-HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhhhhhhhHH-HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 9999988765 6677779999999999999997 99999999853 456655444 7999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEecccccCCCCCCCccEEEeCCCchhhhhhHHHHHHHHHHcCceeeeecc
Q 012862 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 422 (455)
Q Consensus 348 r~Ea~~i~~~v~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~ 422 (455)
|+||+++.+.|.+.+..+.|..++++||||||||++||||||||+|+++.. +++.|.+.++|++.+..
T Consensus 160 ~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~~~-------v~~~l~~~~~~~~~~~~ 227 (575)
T 3b0x_A 160 LGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGER-------AVEGFVRLPQVKEVYAK 227 (575)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSHHH-------HHHHHHTSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCHHH-------HHHHHHhCcchhhHhhc
Confidence 999999999999888877777899999999999999999999999998763 88899999999987763
No 6
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=100.00 E-value=6.7e-37 Score=330.69 Aligned_cols=195 Identities=16% Similarity=0.263 Sum_probs=167.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh--hcCCCCCCHHHHHHHHHHHHhCCchhhH
Q 012862 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLE 283 (455)
Q Consensus 207 ~~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~L~~l~~~i~s~~~--l~~lpgIG~~ia~kI~Eil~tG~~~~le 283 (455)
.++|++|+++|++||+++++.|++ ||++||++||++|+.+|.+|++..+ +..|||||++++.+|.|++++|.+..++
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~ 86 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLE 86 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHH
Confidence 346999999999999999999987 8999999999999999999999977 9999999999999999999999999999
Q ss_pred HHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc---cCchh--------hhhh--chhhHhhhccCcCHHH
Q 012862 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTH--------SQRL--GLKYFDDIKTRIPRHE 350 (455)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~---~~L~~--------~q~~--Glk~~ed~~~~i~r~E 350 (455)
.+..+++. .+..|++|+|||||+|++||+.||+|++||+++ ++|++ +|++ |+++|+++.+||||+|
T Consensus 87 ~~~~~~~~-~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e 165 (578)
T 2w9m_A 87 AAAGQLPP-GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRA 165 (578)
T ss_dssp HHHHHSCH-HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHH
T ss_pred HHhhhhHH-HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHH
Confidence 99988876 666667999999999999999999999999964 57877 6777 8999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEEecccccCCCCCCCccEEEeCCCchhhhhhHHHHHHHHHHcCcee
Q 012862 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417 (455)
Q Consensus 351 a~~i~~~v~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~ 417 (455)
|+++.+.|.+.+..+. +++||||||||++||||||||+| ++.. | |.+.++|+
T Consensus 166 ~~~~~~~i~~~l~~~~----~~~~Gs~RR~~e~~gDiD~li~~-~~~~-------v---l~~~~~v~ 217 (578)
T 2w9m_A 166 GLAVAEELAGALTDLS----PAPAGDVRRGLETVRAAELTVTG-TPDD-------V---LARLPELT 217 (578)
T ss_dssp HHHHHHHHHHHTGGGC----CEECHHHHHTCSEESSEEEEEES-CHHH-------H---HHHCTTCE
T ss_pred HHHHHHHHHHHHHhCC----CEEecccccCCCccCCEEEEEec-ChHH-------H---HhcCccce
Confidence 9999999988877653 89999999999999999999999 7654 2 77888887
No 7
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.92 E-value=6.9e-26 Score=198.27 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=86.2
Q ss_pred CCCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHH--HHHhhh--ccCccc
Q 012862 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQV--SKQHLA--RFKGSV 85 (455)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~--~l~~l--~~~~~~--~~~~~l 85 (455)
.+.+..+|++|+|||++.+||.+|++||+++++++||+|++.++++|||||+++.+. +++|+ +...++ ..+++|
T Consensus 4 ~~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 4 GSSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CCCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEE
Confidence 456678999999999999999999999999999999999999999999999987754 77888 766665 236899
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 012862 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 86 V~~~Wl~es~k~g~lvdee~y~l~ 109 (455)
|+++||+|||++|+|||++.|++.
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l 107 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRL 107 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSC
T ss_pred eccHHHHHHHhcCCcCCcccceEe
Confidence 999999999999999998665554
No 8
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=182.91 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhc-cCcccc
Q 012862 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLAR-FKGSVI 86 (455)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~--~l~~l~~~~~~~-~~~~lV 86 (455)
+++.+|+++|+||+|||++.+||.+|+++|+++++++||+|++.++++|||||+++.+. ++++++..++.. .+++||
T Consensus 12 ~~~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv 91 (120)
T 2coe_A 12 MASSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELL 91 (120)
T ss_dssp SSSCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEE
T ss_pred CCCCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEe
Confidence 45788899999999999999999999999999999999999999999999999986643 556666544433 368999
Q ss_pred ccchHHHHHhcCCCCCcccc-ccccC
Q 012862 87 RYQWLEDSLRLGEKVSEDLY-RIKLD 111 (455)
Q Consensus 87 ~~~Wl~es~k~g~lvdee~y-~l~~~ 111 (455)
+++||+|||++|++|||++| .|..|
T Consensus 92 ~i~Wl~esmk~g~lv~ee~~~~l~~~ 117 (120)
T 2coe_A 92 DVSWLIECIGAGKPVEMTGKHQLSGP 117 (120)
T ss_dssp EHHHHHHHHHTTSCCCCSSSSBCCCS
T ss_pred ecHHHHHHHHcCCccCcccceEeccC
Confidence 99999999999999998554 45443
No 9
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.81 E-value=5.1e-21 Score=163.19 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=84.2
Q ss_pred CCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC---hHHHHHHHHHhhhccCccccccc
Q 012862 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL---EALLQQVSKQHLARFKGSVIRYQ 89 (455)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~---~~~l~~l~~~~~~~~~~~lV~~~ 89 (455)
..++++|+||++||++.+++..|++++.++++++||+|++.++++|||||+++. .+.+++++.+.++ ..++||+.+
T Consensus 6 ~~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~-~~~~iV~~~ 84 (106)
T 2jw5_A 6 EEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLP-PGAQLVKSA 84 (106)
T ss_dssp CCGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCC-SSCEEEEHH
T ss_pred ccCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccC-CCcEEecCc
Confidence 557899999999999999999999999999999999999999999999999742 2355555543332 257999999
Q ss_pred hHHHHHhcCCCCCccccccccC
Q 012862 90 WLEDSLRLGEKVSEDLYRIKLD 111 (455)
Q Consensus 90 Wl~es~k~g~lvdee~y~l~~~ 111 (455)
|++|||++|++|||++|.+.+|
T Consensus 85 Wv~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 85 WLSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp HHHHHHHTCSCCCGGGTBCSCC
T ss_pred hHHHHHhcCcccCcccccccCC
Confidence 9999999999999999988764
No 10
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.62 E-value=1.1e-15 Score=134.73 Aligned_cols=95 Identities=24% Similarity=0.383 Sum_probs=76.4
Q ss_pred CCCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchH
Q 012862 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (455)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl 91 (455)
+..+..+|+||+|||. +....+++.|+++++++||+|++.+++.|||||+.+....++.... ....+++||+++||
T Consensus 34 ~~~~~~lF~g~~i~i~--G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~--~~~~~~~iV~~~Wv 109 (132)
T 1wf6_A 34 FQAPEDLLDGCRIYLC--GFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWN--KSAHRPHVVGAKWL 109 (132)
T ss_dssp CCCCTTTTTTCEEEEE--SCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHH--HSCCCCCEEEHHHH
T ss_pred ccccccccCCEEEEEE--CCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHH--hhCCCCeEechHHH
Confidence 3556789999999998 4556788899999999999999999999999999864332222111 11236799999999
Q ss_pred HHHHhcCCCCCcccccccc
Q 012862 92 EDSLRLGEKVSEDLYRIKL 110 (455)
Q Consensus 92 ~es~k~g~lvdee~y~l~~ 110 (455)
.+|+++|++|||+.|.+..
T Consensus 110 ~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 110 LECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHHHHHSSCCCSGGGBCCC
T ss_pred HHHHHcCCcCCHhhccCCC
Confidence 9999999999999997753
No 11
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.61 E-value=1.2e-15 Score=130.09 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=74.0
Q ss_pred CCCCCcEEEEecC-CCCc-hHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH-HHHHHHHHhhhccCccccccchHHH
Q 012862 17 GIFAGMRVFLVEK-GVQN-RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA-LLQQVSKQHLARFKGSVIRYQWLED 93 (455)
Q Consensus 17 ~~F~g~~iy~~~~-~~g~-~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~-~l~~l~~~~~~~~~~~lV~~~Wl~e 93 (455)
.+|+||+|||... ..|. .|.+.|.++++++||+|.+.++.+|||||+.+... ..+ ++...+++||++.||.+
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~-----~A~~~~i~iV~~~Wv~~ 80 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWD-----KAQKRGVKLVSVLWVEK 80 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHH-----HHHHHTCEEECHHHHHH
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHH-----HHhcCCCEEECHHHHHH
Confidence 3999999999555 4554 46678999999999999999999999999976542 221 12223689999999999
Q ss_pred HHhcCCCCCccccccccCC
Q 012862 94 SLRLGEKVSEDLYRIKLDP 112 (455)
Q Consensus 94 s~k~g~lvdee~y~l~~~~ 112 (455)
|+++|++|||++|.+..++
T Consensus 81 C~~~~~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 81 CRTAGAHIDESLFPAANMN 99 (107)
T ss_dssp HHHHTSCCCGGGSBCCCTT
T ss_pred HHHhCccCChhcccCCCCc
Confidence 9999999999999987553
No 12
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.53 E-value=1.5e-14 Score=141.59 Aligned_cols=94 Identities=23% Similarity=0.303 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEEEec--------CCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHH--HHHHHHHhhhcc
Q 012862 13 LDSNGIFAGMRVFLVE--------KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EAL--LQQVSKQHLARF 81 (455)
Q Consensus 13 ~~~~~~F~g~~iy~~~--------~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~-~~~--l~~l~~~~~~~~ 81 (455)
..|.+||+||+|||.. ..+...|+++++++++++||+|++.++++|||||+.+. ++. ++.++. ....
T Consensus 159 ~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~--~~~~ 236 (263)
T 3ii6_X 159 CSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR--TFKR 236 (263)
T ss_dssp TCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHH--TCSS
T ss_pred CCcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHh--hcCC
Confidence 3578999999999963 24455689999999999999999999999999999753 222 232222 1123
Q ss_pred CccccccchHHHHHhcCCCCCcccccc
Q 012862 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (455)
Q Consensus 82 ~~~lV~~~Wl~es~k~g~lvdee~y~l 108 (455)
.++||+++||.+|+++|++|||++|.+
T Consensus 237 ~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 237 KFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 689999999999999999999999975
No 13
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=3.6e-14 Score=116.16 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCccccccch
Q 012862 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (455)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls--~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~W 90 (455)
.++..+|+||+|||.+... . .+..|+++++++||++...++ ..|||||+.+..... ... ..+.+||+.+|
T Consensus 2 ~~~~~~f~g~~~~i~g~~~-~-~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K----~~~--~~~~~iV~~~W 73 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTK-P-GRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKK----RIE--FANYKVVSPDW 73 (92)
T ss_dssp ----CTTTTCEEEECSCCS-S-CHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHH----HHH--TTTSCEECTHH
T ss_pred CccccccCCEEEEEeCCCC-c-CHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHH----HHH--cCCCCEEcccH
Confidence 3566799999999975222 2 345799999999999999998 899999998765421 111 13689999999
Q ss_pred HHHHHhcCCCCCcccccc
Q 012862 91 LEDSLRLGEKVSEDLYRI 108 (455)
Q Consensus 91 l~es~k~g~lvdee~y~l 108 (455)
|.||+++|++|||++|.+
T Consensus 74 i~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 74 IVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHHHTSCCCGGGGBC
T ss_pred HHHHHHcCCcCChhhccc
Confidence 999999999999999986
No 14
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=114.62 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=71.2
Q ss_pred CCCCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccc
Q 012862 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (455)
Q Consensus 11 ~~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls-~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~ 89 (455)
.+..+..+|+||+||+.+... ..++.|+++++.+||++...++ ..|||||+...... +...+. +.+||+++
T Consensus 5 ~~~~~~~lF~g~~~~isg~~~--~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~----k~~~~~--~~~iV~p~ 76 (97)
T 2ebw_A 5 SSGTSSTIFSGVAIYVNGYTD--PSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNA----KIKELK--GEKVIRPE 76 (97)
T ss_dssp CCSCCCCTTTTCEEEECSSCS--SCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTT----HHHHTS--SSCCBCTH
T ss_pred cCCCCCCCCCCeEEEEeCCCc--ccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChH----HHHHhc--CCCEeChH
Confidence 345566899999999974332 3357899999999999988776 78999999865321 111221 67999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 012862 90 WLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 90 Wl~es~k~g~lvdee~y~l~ 109 (455)
||.||+++|++||+++|.+.
T Consensus 77 Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 77 WIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHHHHHHTSCCCSGGGBSC
T ss_pred HHHHHHHcCCccCchHcEec
Confidence 99999999999999999874
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.43 E-value=1.2e-13 Score=117.20 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=71.4
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012862 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (455)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (455)
...+|.||+|+|.... + ..+..|++++..+||+|...++.+|||||+.+... ....+..++...+.+||+.+||.+|
T Consensus 12 ~~~~l~g~~i~isg~~-~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~-~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKL-S-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPN-DTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp --CTTTTCEEEECGGG-G-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTT-CCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccCCCCCeEEEEeCCC-h-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCC-CCCHHHHHHHHCCCeEecHHHHHHH
Confidence 3568999999997432 2 45678999999999999999999999999943211 0011222233357899999999999
Q ss_pred HhcCCCCCccccccccC
Q 012862 95 LRLGEKVSEDLYRIKLD 111 (455)
Q Consensus 95 ~k~g~lvdee~y~l~~~ 111 (455)
+++|++|||++|.+...
T Consensus 89 ~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 89 AQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHTSCCCGGGCCTTCC
T ss_pred HHhCCCCchhhCCCCCC
Confidence 99999999999998653
No 16
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.5e-13 Score=116.11 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHH
Q 012862 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (455)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~ 92 (455)
.+...+|.||+|+|.... ...+..|++++..+||+|...++..|||||+.+.... ++.++...+.+||+.+||.
T Consensus 17 ~~~~~~f~g~~i~itG~~--~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~----K~~~A~~~gi~IV~~~Wl~ 90 (129)
T 2d8m_A 17 EELGKILQGVVVVLSGFQ--NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP----KYSQVLGLGGRIVRKEWVL 90 (129)
T ss_dssp HHHTTTSTTEEEEEESCC--TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCH----HHHHHHHHTCEEEETHHHH
T ss_pred CCccccCCCeEEEEeCCC--cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCCh----HHHHHHHCCCcEecHHHHH
Confidence 334568999999997533 3345678999999999999999999999999865321 1122223478999999999
Q ss_pred HHHhcCCCCCccccccccCC
Q 012862 93 DSLRLGEKVSEDLYRIKLDP 112 (455)
Q Consensus 93 es~k~g~lvdee~y~l~~~~ 112 (455)
+|+++|++|||+.|.+..++
T Consensus 91 d~~~~~~~l~e~~Y~l~~~~ 110 (129)
T 2d8m_A 91 DCHRMRRRLPSQRYLMAGPG 110 (129)
T ss_dssp HHHHTTSCCCGGGGBCSSSS
T ss_pred HHHHhCCcCChHhcccCCCC
Confidence 99999999999999987543
No 17
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=3.4e-13 Score=115.07 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHh
Q 012862 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k 96 (455)
.+|.||+|+|. ++....+..++++++++||++...++.++||||+.+... .+.+.+...+.+||+.+||.||++
T Consensus 11 ~~F~g~~i~~s--g~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~----~K~~~a~~~~i~IV~~~Wl~dsi~ 84 (109)
T 2cou_A 11 PPFQDCILSFL--GFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTV----KDLPFEPSKKLFVVKQEWFWGSIQ 84 (109)
T ss_dssp CTTTTCBEEEE--SSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTC----SSCSSCCCTTSEEECHHHHHHHHH
T ss_pred CcCCCeEEEec--CCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCcc----HHHHHHHHCCCeEecHHHHHHHHH
Confidence 48999999997 566666778899999999999999999999999976432 112233344789999999999999
Q ss_pred cCCCCCccccccc
Q 012862 97 LGEKVSEDLYRIK 109 (455)
Q Consensus 97 ~g~lvdee~y~l~ 109 (455)
.|+++||+.|.+.
T Consensus 85 ~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 85 MDARAGETMYLYE 97 (109)
T ss_dssp TTSCCCGGGTBCC
T ss_pred cCCcCChhccCCC
Confidence 9999999999885
No 18
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=111.80 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=74.3
Q ss_pred CCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHh
Q 012862 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k 96 (455)
..|.||+|+|. |+....+..+++++.++||++...+++.+||+|+.+.+.. +...+...+.+||+.+||.+|++
T Consensus 20 p~F~g~~Ic~s--Gf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~----K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 20 PPFQDCILSFL--GFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK----DLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CTTTTCEECEE--SCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS----SCSSCCCSSCEEEEHHHHHHHHH
T ss_pred CccCCeEEEEe--CCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh----hHHHHHHCCeeEecHHHHHHHHH
Confidence 48999999996 5666667789999999999999999999999999876532 22233345889999999999999
Q ss_pred cCCCCCcccccccc
Q 012862 97 LGEKVSEDLYRIKL 110 (455)
Q Consensus 97 ~g~lvdee~y~l~~ 110 (455)
.|..+||..|.+..
T Consensus 94 ~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 94 MDARAGETMYLYEK 107 (112)
T ss_dssp HTSCCCGGGSBCCC
T ss_pred cCCccChhhceecc
Confidence 99999999999964
No 19
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.26 E-value=1.4e-11 Score=104.31 Aligned_cols=89 Identities=12% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHHHHHHHHHhhhccCccccccchHHHHH
Q 012862 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~-~~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (455)
.+|.||++||..... ...+..+++++...||.|.+.++++|||||++.. +..++... ....+..+|+.+||.+|+
T Consensus 6 d~F~g~~f~l~~~~p-~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~---~~~p~~~~V~P~WI~~Ci 81 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFP-GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEAL---MENPSLAFVRPRWIYSCN 81 (104)
T ss_dssp CTTTTCEEEEESCCS-TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHH---TTCTTCEEECHHHHHHHH
T ss_pred hhhCCeEEEEcCCCc-HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHh---hhCCCCeEEccHHHHHHH
Confidence 599999999986543 3345678999999999999999999999999864 33333221 112367899999999999
Q ss_pred hcCCCCCccccccc
Q 012862 96 RLGEKVSEDLYRIK 109 (455)
Q Consensus 96 k~g~lvdee~y~l~ 109 (455)
+.+++||++.|.+.
T Consensus 82 ~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 82 EKQKLLPHQLYGVV 95 (104)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred hcCccCCcccceec
Confidence 99999999999985
No 20
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.18 E-value=6.4e-12 Score=122.31 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--H--HHHHHHHHhhhc-------
Q 012862 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--A--LLQQVSKQHLAR------- 80 (455)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~--~--~l~~l~~~~~~~------- 80 (455)
...+..+|+||++||... ....++++++.+++++||+|++.++..+||||+...+ + .+..++.....+
T Consensus 154 ~~~~~~lF~g~~~yl~~~-~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (264)
T 1z56_C 154 RRFPLFLFSNRIAYVPRR-KISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTI 232 (264)
T ss_dssp CCCCCC---------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSC
T ss_pred ccCchhhhCCeEEEEecC-CCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccccccc
Confidence 346788999999999753 2345678899999999999999998777777775432 2 122233221211
Q ss_pred cC-ccccccchHHHHHhcCCCCCcccccc
Q 012862 81 FK-GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (455)
Q Consensus 81 ~~-~~lV~~~Wl~es~k~g~lvdee~y~l 108 (455)
.. +++|+.+||.+||++|++|||+.|.+
T Consensus 233 ~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 233 PKIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 12 59999999999999999999999975
No 21
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=99.12 E-value=5e-13 Score=123.21 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=62.8
Q ss_pred hchhhHhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEEecccccCCCCCCCccEEEeCCCchhhhhhHHHHHHHHHH-
Q 012862 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE- 412 (455)
Q Consensus 334 ~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~- 412 (455)
+|+++++++.+++.++.+.++ | -.||+++++||||||||++||||||||+|+++. .+++.|.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~---i------k~~g~~v~iaGS~RRgket~gDiDiLit~~~~~-------~v~~~L~~~ 69 (174)
T 1jaj_A 6 QGKKIVNHLRSRLAFEYNGQL---I------KILSKNIVAVGSLRREEKMLNDVDLLIIVPEKK-------LLKHVLPNI 69 (174)
T ss_dssp HHHHHHHHHHHSEEEEETTEE---E------EECTTTEEEEEHHHHTCSEECCEEEEEEESSHH-------HHHTSSSEE
T ss_pred hHHHHHHHHHhhhhHHhhccc---c------cCCCcEEEEeccccCCCCCCCCEEEEEecCCHH-------HHHHHHHhc
Confidence 699999999999999887553 1 158999999999999999999999999999854 58899999
Q ss_pred -cCcee-eeec
Q 012862 413 -MKFLR-EDLI 421 (455)
Q Consensus 413 -~g~l~-~~L~ 421 (455)
.|+|+ +.+.
T Consensus 70 ~~~~v~~~~l~ 80 (174)
T 1jaj_A 70 RIKGLSFSVKV 80 (174)
T ss_dssp EESSCEEEEEE
T ss_pred cCCceeHhHee
Confidence 99999 8875
No 22
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=9.3e-11 Score=98.65 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=65.8
Q ss_pred CCCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEee-----------cCCCccEEEEcCChHHHHHHHHHhhhc
Q 012862 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEK-----------LSKKVTHVLAMDLEALLQQVSKQHLAR 80 (455)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~-----------ls~~VTHVV~~~~~~~l~~l~~~~~~~ 80 (455)
+..+..+|+|+++||.. ...++.|+.+++++||.|... .+..+||+|++.... +. . .
T Consensus 6 ~~~~~~LF~g~~F~i~~----e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~~-~--~ 73 (100)
T 2ep8_A 6 SGKHKKLFEGLKFFLNR----EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----QT-S--V 73 (100)
T ss_dssp CSCSCCTTSSCEEECCS----SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----SC-C--B
T ss_pred cCchHHHcCCcEEEEec----CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----hh-h--c
Confidence 45567899999999963 234678999999999999865 257899999975321 11 1 1
Q ss_pred cCccccccchHHHHHhcCCCCCccccc
Q 012862 81 FKGSVIRYQWLEDSLRLGEKVSEDLYR 107 (455)
Q Consensus 81 ~~~~lV~~~Wl~es~k~g~lvdee~y~ 107 (455)
.+..+|.++||.||+.++++||+++|.
T Consensus 74 ~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 74 IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 245899999999999999999999984
No 23
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=99.09 E-value=2e-10 Score=94.21 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHh
Q 012862 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276 (455)
Q Consensus 208 ~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~t 276 (455)
..|..|++-|+++++.++-. +..++.+|++|+++|+++|.+|++..|+..|+|||++|+++|.|+|+.
T Consensus 13 ~~N~lf~~wL~e~~~~a~~r-~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 13 CPNPLFVRWLTEWRDEAASR-GRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45999999999999988843 456789999999999999999999999999999999999999999863
No 24
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.05 E-value=1.1e-10 Score=109.88 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=65.9
Q ss_pred EecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC--hHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCc
Q 012862 26 LVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL--EALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSE 103 (455)
Q Consensus 26 ~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~--~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lvde 103 (455)
|+.+++...++..+.++++++||.+++.++++|||||+.+. .+..+.+. +...+.+||+.+||++|+++|++|||
T Consensus 5 i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~---a~~~g~~IV~~~Wl~~c~~~~~~~~e 81 (210)
T 2nte_A 5 LIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCML---GILNGCWILKFEWVKACLRRKVCEQE 81 (210)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHH---HHHTTCEEEETHHHHHHHHHTSCCCG
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHH---HHhcCCEEecHHHHHHHHHcCCcCCh
Confidence 34458888888899999999999999999999999999763 22222222 22247899999999999999999999
Q ss_pred cccccc
Q 012862 104 DLYRIK 109 (455)
Q Consensus 104 e~y~l~ 109 (455)
++|.+.
T Consensus 82 ~~y~~~ 87 (210)
T 2nte_A 82 EKYEIP 87 (210)
T ss_dssp GGTBCT
T ss_pred hhccCC
Confidence 999985
No 25
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.98 E-value=3.1e-10 Score=106.25 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=66.0
Q ss_pred EEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh-----HHHHHHHHHhhhccCccccccchHHHHHhcCC
Q 012862 25 FLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-----ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGE 99 (455)
Q Consensus 25 y~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~-----~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~ 99 (455)
+|+.+++...+++.+.++++++||.+++.+++.|||||+.+.+ +-.+.+ .+...+.+||+.+||.+|+++|+
T Consensus 6 ~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~---~a~~~g~~IV~~~Wl~~~~~~~~ 82 (214)
T 1t15_A 6 SMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYF---LGIAGGKWVVSYFWVTQSIKERK 82 (214)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHH---HHHHTTCEEEETHHHHHHHHTTS
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHH---HHHhcCCEEeCHHHHHHHHHCCC
Confidence 3444588888889999999999999999999999999997642 222222 22224778999999999999999
Q ss_pred CCCccccccc
Q 012862 100 KVSEDLYRIK 109 (455)
Q Consensus 100 lvdee~y~l~ 109 (455)
++||++|.+.
T Consensus 83 ~~~e~~y~~~ 92 (214)
T 1t15_A 83 MLNEHDFEVR 92 (214)
T ss_dssp CCCGGGGBCC
T ss_pred cCChHHeEee
Confidence 9999999986
No 26
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.95 E-value=8.1e-10 Score=104.78 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhccCccccccchHHHHH
Q 012862 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLARFKGSVIRYQWLEDSL 95 (455)
Q Consensus 18 ~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~--~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (455)
-+++++|.+. |+....+..++++++.+||.+++.+++.|||||+...+. ..+..+...+...+.+||+.+||.+|+
T Consensus 4 ~~~~~~i~~s--g~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 4 AERDISMVVS--GLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCeEEEEc--CCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 4678888885 777777888999999999999999999999999976421 011122222223477899999999999
Q ss_pred hcCCCCCccccccc
Q 012862 96 RLGEKVSEDLYRIK 109 (455)
Q Consensus 96 k~g~lvdee~y~l~ 109 (455)
++|++|||+.|.+.
T Consensus 82 ~~~~~~~e~~y~~~ 95 (229)
T 1l0b_A 82 QERKLLSVHEFEVK 95 (229)
T ss_dssp TTTSCCCSGGGBCC
T ss_pred HCCCcCChHHeEec
Confidence 99999999999985
No 27
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.94 E-value=7.7e-10 Score=113.34 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=69.7
Q ss_pred CCCCCcEEEEecCCCC--chHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchHHH
Q 012862 17 GIFAGMRVFLVEKGVQ--NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWLED 93 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~g--~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~-~~~lV~~~Wl~e 93 (455)
.+|+||+|+|.+.... ...+..+.+++..+||++...++.+|||||+.+.... +..++... +.+||+.+||.+
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~----K~~~A~~~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE----KVKKAVSMGNIKVVKLNWLTE 356 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCH----HHHHHHHSSSCCEEEHHHHHH
T ss_pred hhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCch----HHHHHHhcCCCEEEcHHHHHH
Confidence 6899999999755322 2234578999999999999999999999999754321 11222233 679999999999
Q ss_pred HHhcCCCCCcccccc
Q 012862 94 SLRLGEKVSEDLYRI 108 (455)
Q Consensus 94 s~k~g~lvdee~y~l 108 (455)
|++.++.+||++|.+
T Consensus 357 c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 357 SLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHTTSCCCGGGGBC
T ss_pred HHHhCCcCChhhcee
Confidence 999999999999986
No 28
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.92 E-value=1.4e-09 Score=108.22 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls-~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (455)
..+|.||+|+|. |.....++.+++++..+||++.+.++ ..+||||+.+.... +...+...+.+||+.+||.+|
T Consensus 197 ~~~f~g~~i~~t--G~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~----K~~~A~~~gi~IV~~~Wl~ds 270 (298)
T 3olc_X 197 CPIFLGCIICVT--GLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ----KYECAKRWNVHCVTTQWFFDS 270 (298)
T ss_dssp CCTTTTCEEEEC--SCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH----HHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCeEEEEe--CCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch----HHHHHHHCCCeEEeHHHHHHH
Confidence 468999999997 44444567899999999999999998 89999999765421 122233347899999999999
Q ss_pred HhcCCCCCccccccccC
Q 012862 95 LRLGEKVSEDLYRIKLD 111 (455)
Q Consensus 95 ~k~g~lvdee~y~l~~~ 111 (455)
++.|+++||+.|.+..+
T Consensus 271 i~~g~~lde~~Y~l~~~ 287 (298)
T 3olc_X 271 IEKGFCQDESIYKTEPR 287 (298)
T ss_dssp HHHTSCCCGGGSBSCC-
T ss_pred HHCCCCCCchhcCCCCC
Confidence 99999999999999643
No 29
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.87 E-value=1.6e-09 Score=88.85 Aligned_cols=73 Identities=19% Similarity=0.334 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls-~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (455)
..+|.||++|+.... . +...|++++...||.|+..++ .+|||||.++.+ ..+..+|+++||-+|
T Consensus 14 pdiFsg~~~~l~~~v-~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~------------~~~~~~V~p~WI~dc 78 (88)
T 3pc7_A 14 LDIFTGVRLYLPPST-P--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK------------NPAAQQVSPEWIWAC 78 (88)
T ss_dssp CCCSTTCEECCCTTS-T--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT------------CTTSEEECHHHHHHH
T ss_pred ChhhcCeEEEccCCc-C--chhhheeeeeecCCEEecccCCCcCeEEecCCCc------------CCCCcEEchHHHHHH
Confidence 369999999997533 2 236799999999999988876 589999976631 235689999999999
Q ss_pred HhcCCCCCc
Q 012862 95 LRLGEKVSE 103 (455)
Q Consensus 95 ~k~g~lvde 103 (455)
++.|++|++
T Consensus 79 I~k~~Ll~~ 87 (88)
T 3pc7_A 79 IRKRRLVAP 87 (88)
T ss_dssp HHHTSCCSC
T ss_pred HhCCcccCC
Confidence 999999985
No 30
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.77 E-value=8.8e-09 Score=100.61 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=68.1
Q ss_pred CCCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchH
Q 012862 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWL 91 (455)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~-~~~lV~~~Wl 91 (455)
.+...+|+|+++|+.. +.....++-|++++.++||++...+++.+||||+.......+ .+... ...||+++||
T Consensus 5 ~~~s~lF~G~~f~V~s-g~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~k~~-----~~~~~g~~~IV~p~Wv 78 (263)
T 3ii6_X 5 SKISNIFEDVEFCVMS-GTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVK-----NIILSNKHDVVKPAWL 78 (263)
T ss_dssp -CCCCTTTTCEEEECC-CC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCCHHHH-----HHHHSCSCCEECHHHH
T ss_pred CcCcccCCCeEEEEEc-CCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCHHHH-----HHHhcCCCCEeehHHH
Confidence 3456799999999963 333344567999999999999988888888888876542211 12222 3799999999
Q ss_pred HHHHhcCCCCCccccccc
Q 012862 92 EDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 92 ~es~k~g~lvdee~y~l~ 109 (455)
.||+++|++||.++|.+.
T Consensus 79 ~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 79 LECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHHHHTSCCCCCGGGEE
T ss_pred HHHHhcCCcCCCCHHHHh
Confidence 999999999998888765
No 31
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.75 E-value=6e-09 Score=108.56 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=68.8
Q ss_pred CCCCCcEEEEecCCCCc--hHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchHHH
Q 012862 17 GIFAGMRVFLVEKGVQN--RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWLED 93 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~g~--~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~-~~~lV~~~Wl~e 93 (455)
..|.||+|.|.+..... ..+..+..++..+||++...++..|||||+.+.... +..++... +++||+.+||.+
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~----K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE----KVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCH----HHHHHHHHSSSEEEEHHHHHH
T ss_pred cccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCH----HHHHHHhcCCCEEEeHHHHHH
Confidence 58999999997643221 123568999999999999999999999999764321 12222233 579999999999
Q ss_pred HHhcCCCCCcccccc
Q 012862 94 SLRLGEKVSEDLYRI 108 (455)
Q Consensus 94 s~k~g~lvdee~y~l 108 (455)
|++.++.+||..|.+
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999986
No 32
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.72 E-value=9e-09 Score=96.50 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=62.6
Q ss_pred EecCCCCchHHHHHHHHHHhcCC-EEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCcc
Q 012862 26 LVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (455)
Q Consensus 26 ~~~~~~g~~R~~~l~~li~~~Gg-~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lvdee 104 (455)
|+-+++.......+.+.+..+|| .+++.+++.+||||+....+-.+.+ .+-..+.+||+.+||.+|+++|+.+||+
T Consensus 14 ~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l---~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~ 90 (199)
T 3u3z_A 14 LVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVL---LGIARGCWVLSYDWVLWSLELGHWISEE 90 (199)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHH---HHHHTTCEEEETHHHHHHHHHTSCCCSG
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHH---HHHHCCCcEEeHHHHHHHhhCCCCCChh
Confidence 34457877777788999999876 6778899999999997643222211 2223467999999999999999999999
Q ss_pred ccccc
Q 012862 105 LYRIK 109 (455)
Q Consensus 105 ~y~l~ 109 (455)
+|.+.
T Consensus 91 ~y~~~ 95 (199)
T 3u3z_A 91 PFELS 95 (199)
T ss_dssp GGBCT
T ss_pred hcccc
Confidence 99986
No 33
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=98.71 E-value=2.8e-10 Score=109.89 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=36.6
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhhhchhhHhhhccC-------------cC-HHHHHHHHHHHH
Q 012862 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTR-------------IP-RHEVEQMERLLQ 359 (455)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~~ed~~~~-------------i~-r~Ea~~i~~~v~ 359 (455)
.|.+|+||||++|++||+.||.|+++|..+ ..|..+.+||.+..+.|... ++ ..+|..+.+-+.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~~~a~~~a~~i~ 95 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLEVESETEAEVEEEGGEEAPDEDVE 95 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHH
Confidence 455999999999999999999999999754 46889999998888877643 34 444544433233
Q ss_pred HHhhhcCCC-e-EEEEecccccCC---------CCCC-CccEEE----eCCCchhhhhhHHHHHHHHHHcCceeeeec
Q 012862 360 KAGEEVLPE-V-IILCGGSYRRGK---------ASCG-DLDVVI----MHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421 (455)
Q Consensus 360 ~~~~~~~p~-~-~v~~~Gs~RRgk---------e~~g-DvDiLi----t~~d~~~~~~~l~~lv~~L~~~g~l~~~L~ 421 (455)
.... -.|+ + +++++||+||.+ ++++ |+|+++ +...+. |.-.++...|+.++.+.....
T Consensus 96 ~~l~-~~~~~~~~~~~ags~RR~~~~~~~~~~~efvr~d~d~~~~~~~~wrkP~---g~d~~vr~~f~g~~~~~~ig~ 169 (241)
T 1vq8_Y 96 TELQ-ARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPR---GQLSKQRRGIKGKGDTVEAGF 169 (241)
T ss_dssp CCEE-ECSCTTCCCCCCHHHHHHHHHHHHHCCCCCCCTTGGGCTTSCSSCCCCC---CTTCTTTTTCTTSCCCCCGGG
T ss_pred HHHH-hCCCCcCceecChHHHHHHHHhcccCCCCeeccchhheeecccCcCCCC---CccHHHHHHHhCCCCCCcccc
Confidence 3222 2455 4 789999999999 9999 999999 544443 111224555665555554433
No 34
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.66 E-value=1.9e-08 Score=95.70 Aligned_cols=86 Identities=21% Similarity=0.347 Sum_probs=68.2
Q ss_pred CCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 012862 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (455)
Q Consensus 18 ~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (455)
.+.+++|.|. |+.......+++.++.+||.|++.. .++||+|+....+-.+.+ .+...+.+||+.+||.+|+++
T Consensus 13 ~~~~~~i~~S--G~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l---~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 13 PELTPFVLFT--GFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFL---TAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp GGGCCEEEEC--SCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHH---HHTTTCSEEECHHHHHHHHHH
T ss_pred CCCCeEEEEe--CCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHH---HHHHcCCCEecHHHHHHHHHc
Confidence 3567777775 6766666789999999999999886 889999997644322222 223347899999999999999
Q ss_pred CCCCCccccccc
Q 012862 98 GEKVSEDLYRIK 109 (455)
Q Consensus 98 g~lvdee~y~l~ 109 (455)
|+.|||+.|.+.
T Consensus 87 ~~~l~e~~y~l~ 98 (219)
T 3sqd_A 87 QKFIDEQNYILR 98 (219)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChHhccCC
Confidence 999999999985
No 35
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.65 E-value=3.2e-08 Score=95.15 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCcEEEEecCCCCchHHHHHHHHHHhcCCEEEe--ecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 012862 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE--KLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (455)
Q Consensus 20 ~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~--~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (455)
++.++.|. ++....+..+++.+++.||.|++ .++..+||||+....+-.+.+. +-..+.+||+.+||.+|+++
T Consensus 8 ~~~~~~~S--g~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~---aia~G~wIvs~~wl~~s~~~ 82 (235)
T 3al2_A 8 KQYIFQLS--SLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLA---SVAAGKWVLHRSYLEACRTA 82 (235)
T ss_dssp CCCEEEEE--SCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHH---HHHTTCEEECTHHHHHHHHH
T ss_pred CCEEEEEc--CCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHH---HHHcCCcCccHHHHHHHHHc
Confidence 44555553 66655566799999999999986 4789999999987644222222 22347899999999999999
Q ss_pred CCCCCccccccc
Q 012862 98 GEKVSEDLYRIK 109 (455)
Q Consensus 98 g~lvdee~y~l~ 109 (455)
|+.|||+.|.+.
T Consensus 83 g~~l~E~~ye~~ 94 (235)
T 3al2_A 83 GHFVQEEDYEWG 94 (235)
T ss_dssp TSCCCSGGGBTT
T ss_pred CCCCChhceeec
Confidence 999999999986
No 36
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.65 E-value=3.4e-08 Score=96.27 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=69.8
Q ss_pred CCCCCCCCCcEEEEecCCCC---------------------------chHHHHHHHHHHhcCCEEEeecCCC------cc
Q 012862 13 LDSNGIFAGMRVFLVEKGVQ---------------------------NRRLQIWRQKLVQMGATVEEKLSKK------VT 59 (455)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g---------------------------~~R~~~l~~li~~~Gg~V~~~ls~~------VT 59 (455)
.....+|.|+.++|-..... ......|+++|+.+||.|++.++.. +|
T Consensus 10 p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t 89 (259)
T 1kzy_C 10 PLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQC 89 (259)
T ss_dssp CSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEE
T ss_pred CCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCe
Confidence 34567999999999433211 1244679999999999999988654 79
Q ss_pred EEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCccccccc
Q 012862 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 60 HVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lvdee~y~l~ 109 (455)
|+|+....+-.+.+. +...+.+||+.+||.+|+++|+++|++.|.+.
T Consensus 90 ~LIa~~~~rt~K~l~---ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 90 LLIADQHCRTRKYFL---CLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEESSCCCSHHHHH---HHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred EEEcCCCCCcHHHHH---HHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 999976443222221 11237899999999999999999999999985
No 37
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.55 E-value=6.3e-08 Score=91.13 Aligned_cols=83 Identities=13% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 012862 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (455)
Q Consensus 18 ~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (455)
...+++|.|. |+... .+++.++.+||.+++.+++ +||+|+....+-.+.+. +...+.+||+.+||.+|+++
T Consensus 9 ~~~~~~v~~s--G~~~~---~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~---a~~~g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 9 ESTAPKVLFT--GVVDA---RGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLC---ALGRGIPILSLDWLHQSRKA 79 (209)
T ss_dssp ---CCEEEEC--SSCCH---HHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHH---HHHHTCCEECTHHHHHHHHH
T ss_pred cCCCcEEEEe--CCCcH---HHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHH---HHhcCCccccHHHHHHHHHc
Confidence 4567787774 55533 2489999999999999875 99999975433222221 22236789999999999999
Q ss_pred CCCCCccccccc
Q 012862 98 GEKVSEDLYRIK 109 (455)
Q Consensus 98 g~lvdee~y~l~ 109 (455)
|+.|||+.|.+.
T Consensus 80 ~~~l~e~~y~~~ 91 (209)
T 2etx_A 80 GFFLPPDEYVVT 91 (209)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChhhcccc
Confidence 999999999885
No 38
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.52 E-value=1.5e-07 Score=93.47 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (455)
...|+|++|.+. |+....+..+.+++..+||++.+.++.++||||+.+... .+...+...+.+||+.+||.+||
T Consensus 103 ~~~l~g~~~~~t--G~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t----~Ky~~A~~~gi~IV~~~Wl~~c~ 176 (298)
T 3olc_X 103 NMVMSDVTISCT--SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS----KKYLVAANLKKPILLPSWIKTLW 176 (298)
T ss_dssp CCTTTTCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS----HHHHHHHHTTCCEECHHHHHHHH
T ss_pred ccccCCeEEEeC--CCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC----hHHHHHHHCCCeEeeHHHHHHHH
Confidence 578999999996 555556778999999999999999999999999976532 12222233578999999999999
Q ss_pred hcCCCCCcccc
Q 012862 96 RLGEKVSEDLY 106 (455)
Q Consensus 96 k~g~lvdee~y 106 (455)
+.|+.++..+|
T Consensus 177 ~~~~~~~~~~~ 187 (298)
T 3olc_X 177 EKSQEKKITRY 187 (298)
T ss_dssp HHHHTTCCSSG
T ss_pred HcCCcCCcccc
Confidence 99998876554
No 39
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.50 E-value=1.4e-07 Score=89.22 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=61.1
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHHhh-hccCccccccc
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQHL-ARFKGSVIRYQ 89 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~-----~VTHVV~~~~~~~l~~l~~~~~-~~~~~~lV~~~ 89 (455)
..+|.|+.|||....... ....|+++++.+||+|+..+.. +.||+|+.+.+...+..+.+.+ ...++++|+.+
T Consensus 115 ~~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~ 193 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNM-PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWD 193 (229)
T ss_dssp --CCTTCEEEECSCCSSS-CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETH
T ss_pred hhhhcCceEEEEecCCCC-CHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehh
Confidence 479999999998654443 3457899999999999998854 3688554332210000111111 12368999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 012862 90 WLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 90 Wl~es~k~g~lvdee~y~l~ 109 (455)
||.+|+..+++++++.|.+.
T Consensus 194 WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 194 WVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHhcCCcCCccceEcc
Confidence 99999999999999999886
No 40
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.40 E-value=2.6e-07 Score=89.05 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCCCcEEEEecCC-CCchHHHHHHHHHHhcCCEEEee-----c--CC-------------------CccEEEEcCChHHH
Q 012862 18 IFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-----L--SK-------------------KVTHVLAMDLEALL 70 (455)
Q Consensus 18 ~F~g~~iy~~~~~-~g~~R~~~l~~li~~~Gg~V~~~-----l--s~-------------------~VTHVV~~~~~~~l 70 (455)
+|.||.++|.... ....+...|+++|.++||+|.+. + .. +.||+|+....+-.
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 7999999997541 22245567999999999999886 2 11 35999997644321
Q ss_pred HHHHHHhhhccCccccccchHHHHHhcCCCCCcccccccc
Q 012862 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110 (455)
Q Consensus 71 ~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lvdee~y~l~~ 110 (455)
+.+. +...+.+||+.+||.+|+++|+++|+++|.+..
T Consensus 82 K~~~---ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 82 KYLE---ALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp HHHH---HHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred HHHH---HHHcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 2211 112378999999999999999999999999963
No 41
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.37 E-value=2.6e-07 Score=86.13 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHH-hhhccCcccccc
Q 012862 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQ-HLARFKGSVIRY 88 (455)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~-----~VTHVV~~~~~~~l~~l~~~-~~~~~~~~lV~~ 88 (455)
...+|.|+.+||....... .+..|+.+++.+||+|++.+.. +++|||+.+.+......+.. .....+.++|+.
T Consensus 112 ~~~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~ 190 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNM-PTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR 190 (214)
T ss_dssp TSCTTTTCEEEECSCCSSS-CHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred CCcccCCCEEEEEecCCCC-CHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEec
Confidence 4579999999998654433 3456899999999999998753 22346554332110000111 112346899999
Q ss_pred chHHHHHhcCCCCCccccccc
Q 012862 89 QWLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 89 ~Wl~es~k~g~lvdee~y~l~ 109 (455)
+||.||+..++++|++.|.+.
T Consensus 191 ~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 191 EWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHHTSCCCSGGGBCC
T ss_pred cHHHHhHhhcCcCCCcceeec
Confidence 999999999999999999874
No 42
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.31 E-value=5.3e-07 Score=87.81 Aligned_cols=87 Identities=21% Similarity=0.341 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC---------CCccEEEEcCCh-HHHHHHHHHhhhccCccc
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---------KKVTHVLAMDLE-ALLQQVSKQHLARFKGSV 85 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls---------~~VTHVV~~~~~-~~l~~l~~~~~~~~~~~l 85 (455)
..+|+|++||+.+...+ ...++++.+++.+||+|+..+. .+.+|||+.+.+ .. ...+ .+...+++|
T Consensus 153 ~~LF~G~~I~i~~~~~~-~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~-~~~~--~a~~~~i~i 228 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQ-NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPA-SVLK--CAEALQLPV 228 (259)
T ss_dssp CCTTTTCEEEEEESCTT-TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCH-HHHH--HHHHHTCCE
T ss_pred CCCCCCeEEEEecCCCC-CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChH-HHHH--HHHhcCCCE
Confidence 57999999999876433 3567899999999999998763 257777775432 11 1111 222346899
Q ss_pred cccchHHHHHhcCCCCCcccc
Q 012862 86 IRYQWLEDSLRLGEKVSEDLY 106 (455)
Q Consensus 86 V~~~Wl~es~k~g~lvdee~y 106 (455)
|+.+||.+|+..|+++|++.|
T Consensus 229 Vs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 229 VSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp ECHHHHHHHHHHTSCCCTTSS
T ss_pred ecHHHHHHHHHhCCcCCCCcC
Confidence 999999999999999998764
No 43
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-07 Score=92.23 Aligned_cols=90 Identities=12% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEecCCC-----CchHHHHHHHHHHhcCCEEEeecCCC-----ccEEEEcCChHHHHHHHHHhhhccCccc
Q 012862 16 NGIFAGMRVFLVEKGV-----QNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGSV 85 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~-----g~~R~~~l~~li~~~Gg~V~~~ls~~-----VTHVV~~~~~~~l~~l~~~~~~~~~~~l 85 (455)
..+|+||++|+..... ....++-|+++++.+||+++...... .||||++.... +...+...+..|
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~-----k~~~~~~~~~~v 77 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTT-----ECKALIDRGYDI 77 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCG-----GGGGGTTTTCCC
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcH-----HHHHHHhCCCCE
Confidence 4699999999863211 11134568999999999887543222 47888875432 112222234789
Q ss_pred cccchHHHHHhcCCCCCcccccccc
Q 012862 86 IRYQWLEDSLRLGEKVSEDLYRIKL 110 (455)
Q Consensus 86 V~~~Wl~es~k~g~lvdee~y~l~~ 110 (455)
|+++||.+|+++|++||.++|.+..
T Consensus 78 V~p~Wv~dci~~~~llp~~~y~~~~ 102 (264)
T 1z56_C 78 LHPNWVLDCIAYKRLILIEPNYCFN 102 (264)
T ss_dssp BCSSTTHHHHSSCSCCCCCSCBSCC
T ss_pred EechHHHHHhhcCCCCCCChHHhhc
Confidence 9999999999999999999987753
No 44
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.21 E-value=5.5e-07 Score=85.79 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=53.3
Q ss_pred HHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCccccccc
Q 012862 40 RQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 40 ~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lvdee~y~l~ 109 (455)
.+.++.+||.|++.++ ++||+|+....+- .+.-.+-..+.+||+.+||.+|+++|+.+||+.|.+.
T Consensus 22 ~~~i~~lGg~v~~~~~-~~THlV~~~~~RT---~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~~y~l~ 87 (220)
T 3l41_A 22 IDNLKKLDMSITSNPS-KCTHLIAPRILRT---SKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLN 87 (220)
T ss_dssp CGGGGGGTEEECSCTT-TCSEEECSSCCCB---HHHHHHGGGCCEEECHHHHHHHHHHTSCCCSGGGBCC
T ss_pred cchHhhcceeeccCch-hhhhhhhhhHhhh---cceeecCCCCCeEEEhHHHHhhhhhhhccccCccccC
Confidence 7899999999999885 5999999764332 2222222347899999999999999999999999985
No 45
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.13 E-value=1.6e-06 Score=81.16 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=61.4
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (455)
..+|.|+.+|++.......+ +.|+.+++.+||+|+..+. ..++|| .+... ....+.++|+.+||.||+
T Consensus 117 ~~LF~g~~~~~v~~~~~~~~-~~L~~lI~~~GG~v~~~~~-~~~iiI-~~~~~---------~~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 117 GTLFADQPVMFVSPASSPPV-AKLCELVHLCGGRVSQVPR-QASIVI-GPYSG---------KKKATVKYLSEKWVLDSI 184 (199)
T ss_dssp CCTTTTSCCEEECTTCSSCH-HHHHHHHHHTTCCBCSSGG-GCSEEE-SCCCS---------CCCTTCEEECHHHHHHHH
T ss_pred chhhCCCeEEEECCCCCCCH-HHHHHHHHHcCCEEeccCC-CCEEEE-eCCch---------hccCCCcEEChhHHHHHH
Confidence 47999997666654444333 6799999999999999884 344444 44321 112367899999999999
Q ss_pred hcCCCCCccccccc
Q 012862 96 RLGEKVSEDLYRIK 109 (455)
Q Consensus 96 k~g~lvdee~y~l~ 109 (455)
.+++++|++.|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999874
No 46
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.04 E-value=4.9e-06 Score=80.11 Aligned_cols=80 Identities=11% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCCCCCcEEEEecCCCCch-----------HHHHHHHHHHhcCCEE--EeecCCCccEEEEcCChHHHHHHHHHhhhccC
Q 012862 16 NGIFAGMRVFLVEKGVQNR-----------RLQIWRQKLVQMGATV--EEKLSKKVTHVLAMDLEALLQQVSKQHLARFK 82 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~-----------R~~~l~~li~~~Gg~V--~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~ 82 (455)
..+|.|++|||+...-+.. .++.+..+++.+||.+ ++.+....+|+|+.+... .....+
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~--------~~~~~~ 220 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN--------IVDETN 220 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC--------CCSSCS
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc--------ccccCC
Confidence 5899999999985432211 2578999999999999 545566789999975432 123447
Q ss_pred ccccccchHHHHHhcCCCCCc
Q 012862 83 GSVIRYQWLEDSLRLGEKVSE 103 (455)
Q Consensus 83 ~~lV~~~Wl~es~k~g~lvde 103 (455)
++||+.+||.+|+..|+++|.
T Consensus 221 ~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 221 CPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp SCEECHHHHHHHHHHTSCTTC
T ss_pred CCEecHHHHHHHHHhceecCC
Confidence 899999999999999999974
No 47
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.96 E-value=1.1e-05 Score=75.58 Aligned_cols=89 Identities=9% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCC--ccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012862 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~--VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (455)
.+|.|++||+.+...+ ....|+.+++.+||+|...+... -+|||+........ .. .....+.++|+.+||.+|
T Consensus 114 ~lF~g~~~~~~~~~~~--~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~-~~--~~~~~~i~vvs~eWi~~s 188 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQP--PPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPH-CS--IPLRVGLPLLSPEFLLTG 188 (209)
T ss_dssp CTTTTCEEEECTTCSS--CHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGG-CH--HHHHHTCCEECTHHHHHH
T ss_pred CCcCCcEEEEeCCCCC--CHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHH-HH--HHHHCCCeEEcHHHHHHH
Confidence 6999999999754322 23578899999999999887543 37888753322100 11 111236789999999999
Q ss_pred HhcCCCCCccccccccC
Q 012862 95 LRLGEKVSEDLYRIKLD 111 (455)
Q Consensus 95 ~k~g~lvdee~y~l~~~ 111 (455)
+..+++ +.+.|.+..+
T Consensus 189 I~~q~l-d~e~y~l~~~ 204 (209)
T 2etx_A 189 VLKQEA-KPEAFVLSPL 204 (209)
T ss_dssp HHHTCC-CGGGGBCCTT
T ss_pred HHhccc-ChHHheecCC
Confidence 999775 9999998643
No 48
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.86 E-value=8.8e-06 Score=76.07 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=58.7
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeec-------C----------------CCccEEEEcCChHHHHH
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKL-------S----------------KKVTHVLAMDLEALLQQ 72 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~l-------s----------------~~VTHVV~~~~~~~l~~ 72 (455)
..+|.|+.+||...... ..++.|+++++.+||+|+... + ..+||.|+.+....
T Consensus 102 ~~lF~g~~~~l~~~~~~-~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~--- 177 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKH-HPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN--- 177 (210)
T ss_dssp CCTTTTCEEEECSCCSS-SCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS---
T ss_pred ccccCceEEEEeccCCC-CCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc---
Confidence 46999999999864333 345689999999999999632 1 33577776543210
Q ss_pred HHHHhhhccCccccccchHHHHHhcCCCCCcc
Q 012862 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (455)
Q Consensus 73 l~~~~~~~~~~~lV~~~Wl~es~k~g~lvdee 104 (455)
.....+...+.++|+.+||.||+..++++|.+
T Consensus 178 ~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 178 YHPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CCCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred cCHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 00001112356899999999999999999875
No 49
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.77 E-value=1.7e-05 Score=65.87 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=46.8
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHh
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL 322 (455)
+.++|..|||||+.+|.+|.+..+ +|.+..+++ |.+|+|||+++|++|++.|+ +++|
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed------------L~~v~Gig~k~~~~l~~~g~--ld~~ 95 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVED------------LERVEGITGKQMESFLKANI--LGLA 95 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG------------GGGSTTCCHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH------------HHhCCCCCHHHHHHHHHCcC--hhcc
Confidence 346899999999999999999986 488765554 46999999999999999875 4444
No 50
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.75 E-value=0.00012 Score=62.16 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=61.1
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012862 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (455)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (455)
....|.|.+|.|-+.-..-. ++-++.++..+||.|...++..++|||+.++... -+..++...+.+||+-+||.+.
T Consensus 29 ~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~---sK~~kA~~lgI~Ii~E~~f~~l 104 (109)
T 2k6g_A 29 AENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ---SKSDKAAALGTKIIDEDGLLNL 104 (109)
T ss_dssp CTTTTTTCEEEEESBCSSCC-HHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH---HHHHHHHHHTCEEECHHHHHHH
T ss_pred CCCCCCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh---HHHHHHHHcCCeEEeHHHHHHH
Confidence 34579999999986543333 4568999999999999999999999999765321 1222333458899999999999
Q ss_pred HhcC
Q 012862 95 LRLG 98 (455)
Q Consensus 95 ~k~g 98 (455)
+..+
T Consensus 105 l~~~ 108 (109)
T 2k6g_A 105 IRNL 108 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9765
No 51
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.66 E-value=8.3e-05 Score=63.58 Aligned_cols=80 Identities=9% Similarity=0.086 Sum_probs=57.3
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (455)
...|.|++|.|-+.- ... ++-+++++..+||.|...++..+||||+.++-. ...-+..++...+++||+-+||.++-
T Consensus 8 ~~~l~G~~~ViTG~l-~~~-R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e-~~gsKl~kA~~lgI~IvsE~~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGKL-SRN-KDEVKAMIEKLGGKLTGTANKASLCISTKKEVE-KMNKKMEEVKEANIRVVSEDFLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSCC-SSC-HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHH-HCCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred CCCcCCCEEEEEecC-CCC-HHHHHHHHHHCCCEEcCccccCccEEEECCCCC-CCChHHHHHHHCCCcEEeHHHHHHHH
Confidence 346999999998764 334 457899999999999999999999999973211 11122334445689999999955554
Q ss_pred hcC
Q 012862 96 RLG 98 (455)
Q Consensus 96 k~g 98 (455)
..+
T Consensus 85 ~~~ 87 (113)
T 2cok_A 85 AST 87 (113)
T ss_dssp SCC
T ss_pred hhc
Confidence 443
No 52
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.63 E-value=7e-05 Score=61.70 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012862 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (455)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (455)
+...|.|.+|.|-+.-.. .++-++.++..+||.|...++..+||||+.++.. -+..++...+.+||+.+||.++
T Consensus 4 ~~~~l~G~~~v~TG~l~~--~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g----sK~~kA~~lgI~Ii~E~~f~~~ 77 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR--PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPG----SKLEKARALGVPTLTEEELYRL 77 (92)
T ss_dssp CCCSSTTCEEECSTTTTS--CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSS----TTHHHHHCSSSCCEEHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC--CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC----hHHHHHHHcCCcEEeHHHHHHH
Confidence 445799999999765434 4467899999999999999999999999976532 2223444568999999999999
Q ss_pred Hhc
Q 012862 95 LRL 97 (455)
Q Consensus 95 ~k~ 97 (455)
+..
T Consensus 78 l~~ 80 (92)
T 1l7b_A 78 LEA 80 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 53
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00028 Score=60.17 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHH
Q 012862 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (455)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~e 93 (455)
.....|.|.+|.|-+.-.... ++-++.++..+||.|...++..++|||+.++..- -+..++...+.+||+-+||.+
T Consensus 18 ~~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~---sKl~KA~~lgI~IisE~~f~~ 93 (112)
T 2ebu_A 18 GAENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ---SKSDKAAALGTKIIDEDGLLN 93 (112)
T ss_dssp CCSSSSTTCEEEECSCCSSSC-HHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS---HHHHHHHHHTCEEEEHHHHHH
T ss_pred CCCCCcCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh---HHHHHHHHcCCeEEeHHHHHH
Confidence 334579999999986543333 4568999999999999999999999999765320 122233345789999999999
Q ss_pred HHhc
Q 012862 94 SLRL 97 (455)
Q Consensus 94 s~k~ 97 (455)
.+..
T Consensus 94 ll~~ 97 (112)
T 2ebu_A 94 LIRT 97 (112)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9975
No 54
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.41 E-value=0.00015 Score=69.51 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=65.9
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC----CCccEEEEcCChHHHH--HHHHHhhhccCccccccc
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS----KKVTHVLAMDLEALLQ--QVSKQHLARFKGSVIRYQ 89 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls----~~VTHVV~~~~~~~l~--~l~~~~~~~~~~~lV~~~ 89 (455)
..+|.|+.|||... ..+...|+++++.+||+|..... ...||++++-.....+ ......+...++++|+.+
T Consensus 133 ~~lF~g~~v~l~~~---~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~e 209 (235)
T 3al2_A 133 EGAFSGWKVILHVD---QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTE 209 (235)
T ss_dssp SSTTTTCEEEEECC---HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETH
T ss_pred CCCCCCcEEEEecC---CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHH
Confidence 47999999999864 35667899999999999987643 3479988753211000 011122223478999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 012862 90 WLEDSLRLGEKVSEDLYRIK 109 (455)
Q Consensus 90 Wl~es~k~g~lvdee~y~l~ 109 (455)
||.+|+-..++.+.+.|.+.
T Consensus 210 wlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 210 YIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHhcCCCCChhheEcc
Confidence 99999999999999999885
No 55
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.39 E-value=4.3e-05 Score=60.12 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=36.9
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
.++|..|||||++.|.+|.++. ++..++.|.+|+|+|++++++++.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r---------------~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR---------------PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC---------------CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHc---------------ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 4689999999999999998864 223344456999999999999875
No 56
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=97.16 E-value=0.00038 Score=57.89 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=40.0
Q ss_pred cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 251 ~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
.+.++|..|||||+.+|+.|.+ .|-+..+++| .+|+|+|+++..++-.
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~---~GpF~s~edL------------~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK---NAPYESVEDV------------LNIPGLTERQKQILRE 70 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH---HCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH---cCCCCCHHHH------------HhccCCCHHHHHHHHH
Confidence 3458999999999999999988 6766666655 4999999999998865
No 57
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=97.07 E-value=0.00053 Score=59.92 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=39.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
+.++++.|||||++.|++|. +.|-+..+|+| .+|+|||+|+.+.+-+
T Consensus 61 ~~~eL~~LpGiGp~~A~~II---~~GpF~svedL------------~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV---KNAPYESVEDV------------LNIPGLTERQKQILRE 107 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH---HTCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH---HcCCCCCHHHH------------HhCCCCCHHHHHHHHH
Confidence 45889999999999999997 67877777765 4899999998777643
No 58
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0011 Score=54.86 Aligned_cols=84 Identities=7% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCCCCCcEEEEecCCC---CchHHHHHHHHHHhcCCEEEeecCCCc--cEEEEcCChHHHHHHHHHhhhccCccccccch
Q 012862 16 NGIFAGMRVFLVEKGV---QNRRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~---g~~R~~~l~~li~~~Gg~V~~~ls~~V--THVV~~~~~~~l~~l~~~~~~~~~~~lV~~~W 90 (455)
...|+|+.+||....- ...-.+.|+++++.+||+|...+..+. -+.|+.... ....+.|+..+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN------------~t~LpTVtpTY 76 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYN------------HTNLPTVTPTY 76 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTC------------CCSSSBCCTTH
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCC------------CCCCccccHHH
Confidence 4569999999975311 112457899999999999999985333 234443311 11457899999
Q ss_pred HHHHHhcCCCCCccccccccC
Q 012862 91 LEDSLRLGEKVSEDLYRIKLD 111 (455)
Q Consensus 91 l~es~k~g~lvdee~y~l~~~ 111 (455)
+..|+..+++|+.+.|.++..
T Consensus 77 I~aC~~~nTLLnv~~YLvp~d 97 (106)
T 2l42_A 77 IKACCQSNSLLNMENYLVPYD 97 (106)
T ss_dssp HHHHHHSTTSCGGGGCCBCSC
T ss_pred HHHHHhcCceecccccccCch
Confidence 999999999999999999754
No 59
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.78 E-value=0.0027 Score=49.03 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=38.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|.+|||||..++..|.+.+ |.+. .+.... .+.|.+|+|||+++|..++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~f--gs~~---~l~~a~----~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF--GSVE---RVFTAS----VAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSHH---HHHHCC----HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHc--CCHH---HHHhCC----HHHHhcCCCCCHHHHHHHHH
Confidence 458899999999999988754 5544 443322 34466999999999999986
No 60
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.62 E-value=0.0017 Score=60.52 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=37.2
Q ss_pred cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCH
Q 012862 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 305 (455)
Q Consensus 251 ~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp 305 (455)
++.++|..|||||++.|+.|.++-+.|.+..+|+|.+ +|.|||.
T Consensus 129 A~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~-----------RV~GIg~ 172 (205)
T 2i5h_A 129 TRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ-----------RVKGIQR 172 (205)
T ss_dssp SSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH-----------HSTTCCC
T ss_pred CCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH-----------hcCCCCc
Confidence 3568999999999999999999998899998888753 6888443
No 61
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.51 E-value=0.0069 Score=57.18 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=58.1
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC-------------CccEEEEcCChHH-HHHHHHHhhhcc
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-------------KVTHVLAMDLEAL-LQQVSKQHLARF 81 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~ls~-------------~VTHVV~~~~~~~-l~~l~~~~~~~~ 81 (455)
..+|.|+.||+.+.... . .+.++.++..+||+|...+.. .-..||+.+.+.. .+.. .+.
T Consensus 120 ~~LF~G~~f~it~~~~~-~-~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~-----~~~ 192 (219)
T 3sqd_A 120 SPLFKAKYFYITPGICP-S-LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREY-----FAR 192 (219)
T ss_dssp SCTTTTEEEEECTTCSS-C-HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHH-----HHT
T ss_pred ccccCCcEEEEeCCCCC-C-HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHH-----HHC
Confidence 46999999999865333 2 467999999999999988632 1233444433321 1111 123
Q ss_pred CccccccchHHHHHhcCCCCCcccccc
Q 012862 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (455)
Q Consensus 82 ~~~lV~~~Wl~es~k~g~lvdee~y~l 108 (455)
+..+++.+|+.+|+-.. -++-+.|.+
T Consensus 193 ~~~v~s~E~il~~Il~q-~ld~~~~~~ 218 (219)
T 3sqd_A 193 GIDVHNAEFVLTGVLTQ-TLDYESYKF 218 (219)
T ss_dssp TCCCEETHHHHHHHHHT-CCCTTTSBC
T ss_pred CCcEEeHHHHHHHHHhe-eecchhccc
Confidence 67899999999999975 458777765
No 62
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.49 E-value=0.0057 Score=66.81 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=64.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--Cchhh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~ 331 (455)
++|..|+|+|++.+++|.+-++.-+-..| ...+--| .|+|||+++|+.|.+. +.|++.|.++. .|..+
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l--------~R~L~al-gi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAAY-FGTLEALEAASIEELQKV 549 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcCCh--------hheehhh-cccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhhc
Confidence 67899999999999999876654222222 3344445 9999999999999985 67899998653 57788
Q ss_pred hhhchhhHhhhccCcCHHH
Q 012862 332 QRLGLKYFDDIKTRIPRHE 350 (455)
Q Consensus 332 q~~Glk~~ed~~~~i~r~E 350 (455)
.++|.+..+.|.+-+.-++
T Consensus 550 ~GIG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 550 PDVGIVVASHVHNFFAEES 568 (671)
T ss_dssp TTCCHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHhHH
Confidence 8999888777766554333
No 63
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.47 E-value=0.0021 Score=59.71 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=38.0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
.|.++||||+++|..|-..+....+ .+.+. ..-.+.|++|||||+|||++++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l--~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLL--ARALL----EGDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHH--HHHHH----TTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHH--HHHHH----hCCHHHHHhCCCCCHHHHHHHHH
Confidence 5778999999999988765332211 22333 23445678999999999999986
No 64
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.47 E-value=0.0023 Score=50.10 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=37.6
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhccCchhhhhhchhhHhhhccC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk~~ed~~~~ 345 (455)
....|.+|+|||+++|+++++. ++.|++||.+ ..++|.+.++.+...
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~------v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLK------VKGIGPATLERLRPY 72 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG------STTCCHHHHHHHGGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh------CCCCCHHHHHHHHHh
Confidence 4455679999999999999997 8999999874 457787777776543
No 65
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.44 E-value=0.0036 Score=68.28 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=66.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--Cchhh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~ 331 (455)
++|..++|+|++.+++|.+-++.-+-..+ ...+--| +|+|||+++|+.|++. +.|++.|.++. .|..+
T Consensus 475 e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l--------~R~L~al-GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~I 544 (667)
T 1dgs_A 475 EDLLGLERMGEKSAQNLLRQIEESKHRGL--------ERLLYAL-GLPGVGEVLARNLARR-FGTMDRLLEASLEELIEV 544 (667)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHHGGGCCH--------HHHHHHT-TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHTS
T ss_pred HHHhcccccchhhHHHHHHHHHHHhcCcH--------HHhhHhh-ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHhc
Confidence 67899999999999999766553221111 2344445 9999999999999985 77899997653 47788
Q ss_pred hhhchhhHhhhccCcCHHHHHH-HHHHHHHHh--------hhcCCCeEEEEecccc
Q 012862 332 QRLGLKYFDDIKTRIPRHEVEQ-MERLLQKAG--------EEVLPEVIILCGGSYR 378 (455)
Q Consensus 332 q~~Glk~~ed~~~~i~r~Ea~~-i~~~v~~~~--------~~~~p~~~v~~~Gs~R 378 (455)
.++|.+..+.|.+-+.-++..+ ++.+...-+ ...+.|..++++|.+-
T Consensus 545 ~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv~~~~~~~~~~~l~G~~~v~TG~l~ 600 (667)
T 1dgs_A 545 EEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESKEEVSDLLSGLTFVLTGELS 600 (667)
T ss_dssp TTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTCCCBCC-------------------
T ss_pred cCcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCccccccccccccCCCEEEEeCCCC
Confidence 8999888888776554333333 222222100 1124456788888884
No 66
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.44 E-value=0.002 Score=50.87 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=38.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|..|||||+..+.+|.+.+ |. ++.+... ..+.|.+|+|||+++|.++++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f--gs---l~~l~~a----~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM--GG---LQGLRNA----SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH--SC---HHHHHHC----CHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc--CC---HHHHHHC----CHHHHHHCCCCCHHHHHHHHH
Confidence 458899999999999988764 44 4444432 234567999999999999976
No 67
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.34 E-value=0.0028 Score=59.84 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=37.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|.+++|||+++|..|-+.+....+. ..+.. +-.+.|++|||||+|||+++..
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~~~~l~--~aI~~----~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDAPALR--QVLAD----GNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCHHHHH--HHHHT----TCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCcCCcCHHHHHHHHHhCCHHHHH--HHHHh----CCHHHHhhCCCCCHHHHHHHHH
Confidence 347789999999999987654322221 11222 2335567999999999999985
No 68
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.33 E-value=0.0045 Score=49.97 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=37.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|.+|||||+..+.+|.+.. |.+ +.+.... .+.|.+|+|||+++|.+++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~f--gsl---~~l~~a~----~~eL~~i~GIG~~~a~~I~~ 69 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAAS----REDLALCPGLGPQKARRLFD 69 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHT--CBH---HHHHHCC----HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457899999999998887643 544 4443322 24567999999999999986
No 69
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.22 E-value=0.0018 Score=53.84 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhccCchhhhhhchhhHhhhccCcC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk~~ed~~~~i~ 347 (455)
..+.|+.||||||++|+++.+. +|+|++||.+ ..++|.+.++.+...+.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~------V~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQILRENLE 73 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG------CTTCCHHHHHHHHHTGG
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh------ccCCCHHHHHHHHHHhc
Confidence 4566789999999999999987 8999999984 45788777777765443
No 70
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.22 E-value=0.005 Score=49.97 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=37.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|.+|||||+..+..|.+.+ |.+ +.+.... .+.|.+|+|||+++|.++++
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~f--gs~---~~l~~as----~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAAS----REDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--SSH---HHHHSCC----HHHHHTSSSCCSHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457899999999999887643 544 4444322 24567999999999999986
No 71
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=96.20 E-value=0.0029 Score=59.34 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=37.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
.|.++||||+++|..|-..+....+ .+.+. ..-.+.|++|||||+|||++++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l--~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQF--VNAVE----REEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHH--HHHHH----TTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHH--HHHHH----hCCHHHHhhCCCCCHHHHHHHHH
Confidence 4677999999999988664322111 23333 23456678999999999999975
No 72
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.80 E-value=0.0058 Score=49.59 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=38.0
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhh
Q 012862 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~ 342 (455)
....+..|+.|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.|
T Consensus 27 ~~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I 80 (91)
T 2a1j_B 27 VSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 80 (91)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 3446667789999999999999986 33788887543 4666667776655444
No 73
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.66 E-value=0.0088 Score=48.21 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=37.2
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhh
Q 012862 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~ 342 (455)
......|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.|
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~I 67 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 67 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 346667779999999999999986 44888887543 4666677776554433
No 74
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=95.43 E-value=0.0087 Score=49.24 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.0
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 012862 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (455)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirTledL~~~~ 326 (455)
-|+.+|+|||++++.|++.||.|++||+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3678999999999999999999999999654
No 75
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=95.18 E-value=0.0092 Score=45.98 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhh
Q 012862 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~ 342 (455)
....|+.|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.|
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i 62 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEI 62 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHH
Confidence 4555779999999999999984 66789887543 4666777887665544
No 76
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.10 E-value=0.0045 Score=48.77 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhhc
Q 012862 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~~ 343 (455)
....|..|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.|.
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~ 73 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIF 73 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHH
Confidence 3344679999999999999997 44799988653 46667777876655553
No 77
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=95.06 E-value=0.021 Score=53.49 Aligned_cols=50 Identities=32% Similarity=0.546 Sum_probs=37.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
.|.+|||||+..|..|.+.. |+ ++.+.+... +.|.+|+|||+++|+++++
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~f--gs---~~~l~~a~~----e~L~~v~GiG~~~a~~i~~ 212 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERF--GS---LERFFTASK----AEISKVEGIGEKRAEEIKK 212 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--SS---HHHHTTCCH----HHHHHSTTCCHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc--CC---HHHHHhCCH----HHHhhCCCCCHHHHHHHHH
Confidence 47799999999999987754 44 444443222 3466999999999999986
No 78
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=94.68 E-value=0.2 Score=47.61 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=45.6
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 012862 254 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gi 316 (455)
++|..+ |+|..=++.|.+ .+..|.++.++.+..-....+++.|++|+||||+||..+--.++
T Consensus 107 e~Lr~~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~al 171 (232)
T 4b21_A 107 ETLHEC-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTL 171 (232)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 456554 888765555544 44568887777777666667999999999999999998876544
No 79
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.64 E-value=0.029 Score=42.60 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
..|.+||||||+++++|.+ -+.|+++|.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred hHHHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 4567999999999999997 56699999864
No 80
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=94.63 E-value=0.03 Score=60.27 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=65.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--Cchhh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~ 331 (455)
++|.+|+|+|++.+++|.+=++.-+-..| ...+--| +|++||.++|+.|-+ .+.|++.|..+. .|..+
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~~l--------~r~l~aL-GI~~vG~~~a~~La~-~f~sl~~l~~a~~e~l~~i 549 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAA-YFGTLEALEAASIEELQKV 549 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTS
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCCCH--------HHHHHHc-CCCchhHHHHHHHHH-HcCCHHHHHccCHHHHhcC
Confidence 78999999999999998776654333333 3456667 999999999999976 466999998653 58888
Q ss_pred hhhchhhHhhhccCcC
Q 012862 332 QRLGLKYFDDIKTRIP 347 (455)
Q Consensus 332 q~~Glk~~ed~~~~i~ 347 (455)
.++|.+..+.|.+-+.
T Consensus 550 ~giG~~~A~si~~ff~ 565 (586)
T 4glx_A 550 PDVGIVVASHVHNFFA 565 (586)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHc
Confidence 9999888887776543
No 81
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.63 E-value=0.032 Score=48.70 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhccCchhhhhhchhh
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKY 338 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk~ 338 (455)
..+.|+++|||||++|+++.+. .++|+|||.+ ..++|-+.
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~------V~GIg~k~ 101 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQ 101 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG------CTTCCHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh------CCCCCHHH
Confidence 4455779999999999999987 8999999986 34666543
No 82
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=94.53 E-value=0.067 Score=50.45 Aligned_cols=89 Identities=9% Similarity=0.111 Sum_probs=56.0
Q ss_pred CCCCCCcEEEEecCCCCchHHHHHHHHHHhcCCEEEeec--C--------CCccEEEEcCChHHH-HHHHHHhhhccCcc
Q 012862 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKL--S--------KKVTHVLAMDLEALL-QQVSKQHLARFKGS 84 (455)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~R~~~l~~li~~~Gg~V~~~l--s--------~~VTHVV~~~~~~~l-~~l~~~~~~~~~~~ 84 (455)
..+|+|+.+|+.+.-......+.|+.++..+||+|.... . ++-.+||+.+.+..+ ..++........++
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~ 190 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIF 190 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEE
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEE
Confidence 579999999998654112225679999999999999811 0 122466666444322 22221111122567
Q ss_pred ccccchHHHHHhcCCCCCccc
Q 012862 85 VIRYQWLEDSLRLGEKVSEDL 105 (455)
Q Consensus 85 lV~~~Wl~es~k~g~lvdee~ 105 (455)
||+.+|+..++-.. -++.++
T Consensus 191 i~~~e~ll~~il~q-~l~~~~ 210 (220)
T 3l41_A 191 LQNYDWLIKTVLRQ-EIDVND 210 (220)
T ss_dssp EEEHHHHHHHHHHT-CCCTTC
T ss_pred EechhHHHHHHHHH-HcCcch
Confidence 99999999999874 444443
No 83
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.027 Score=50.44 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=36.7
Q ss_pred CCCC-CcEEEEecCCCC------ch----HHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 012862 17 GIFA-GMRVFLVEKGVQ------NR----RLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (455)
Q Consensus 17 ~~F~-g~~iy~~~~~~g------~~----R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~ 64 (455)
.+|+ +++|||-..... .+ +...|++.+...|++|+.-++.+|||||+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 3588 899999644332 11 224566888999999999999999999984
No 84
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=94.46 E-value=0.024 Score=60.98 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=41.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (455)
...+|.+|||||.+.|.+|.+ . -+..+++|++....+ .+++++|||+|||+++.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~---~-G~~s~edL~~a~~~~---~L~~~~GiG~Ktaq~I~ 148 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWL---A-GIDSLERLREAAESG---ELAGLKGFGAKSAATIL 148 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH---T-TCCSHHHHHHHHHHT---TTTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHH---c-CCCCHHHHHHHHhhC---ccccCCCCCHHHHHHHH
Confidence 467899999999999998864 3 456677776532222 57799999999999993
No 85
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.055 Score=48.06 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=38.9
Q ss_pred CCCcEEEEecCCCC----------chHHHHHHHHHHhcCCEEEeecCCCccEEEEcC
Q 012862 19 FAGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (455)
Q Consensus 19 F~g~~iy~~~~~~g----------~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~ 65 (455)
=++.+|||-..+.. ..+.+.|++.+...||+|++-++.+|||||+.-
T Consensus 22 ~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR 78 (151)
T 3oq0_A 22 KRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 78 (151)
T ss_dssp CCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESS
T ss_pred ccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 38999999766532 235678889999999999999999999999853
No 86
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.33 E-value=0.029 Score=46.09 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.3
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 012862 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (455)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirTledL~~~~ 326 (455)
-|+.+|+|||++++.|.+.||.|++||+..|
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3679999999999999999999999999765
No 87
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=94.24 E-value=0.069 Score=50.67 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=45.0
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 012862 254 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gi 316 (455)
++|..+ |++..=++.|.+ .+..|.+..++.+..-....+++.|++|+||||+||..+--.++
T Consensus 96 e~Lr~~-G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~l 160 (228)
T 3s6i_A 96 EIMRAC-GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSL 160 (228)
T ss_dssp HHHHHH-TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 344433 777764554444 34579887778887777778899999999999999998875433
No 88
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=94.16 E-value=0.029 Score=43.67 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhhcc
Q 012862 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (455)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~~~ 344 (455)
...++|+++.||+...|++|.+.||.|+++|-... .|..+.||.-...++|..
T Consensus 3 ~~~~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~ 57 (70)
T 1u9l_A 3 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (70)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHH
Confidence 35678999999999999999999999999998543 477777777666666553
No 89
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=94.13 E-value=0.048 Score=43.88 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=29.3
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
......+|..|||||||++++|.+ .+.|+++|.++
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~A 47 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 47 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHS
T ss_pred cccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 345667778999999999999997 78899999865
No 90
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.1 Score=48.65 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=73.3
Q ss_pred HHHHHHhcCCccccch--hhhcC-CC--CCC--HHHHHHHHHHHHh---CCchhhHHHHhhchhHHHHHhhhccCcCHHH
Q 012862 238 KAIPVIEKLPFKIESA--DQVKG-LP--GIG--KSMQDHIQEIVTT---GKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307 (455)
Q Consensus 238 rAa~~L~~l~~~i~s~--~~l~~-lp--gIG--~~ia~kI~Eil~t---G~~~~le~l~~~~~~~~l~lf~~I~GvGpkt 307 (455)
+|..+..+||..+... +++.+ |. |+| ..=|+.|.++.+. +.-..++.+....+..+++.|+++|||||+|
T Consensus 50 ~~~~~~~~L~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 50 SAYQALNCLGQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp HHHHHHHHHGGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 3444555556555433 44332 33 433 3456666666551 2112366666667778999999999999999
Q ss_pred HHHHHHc-CCCCHHHhh-hcc-CchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHHhhh
Q 012862 308 AQKLYEK-GHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (455)
Q Consensus 308 A~~ly~~-GirTledL~-~~~-~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~ 364 (455)
|..+--. |+. +.- -+. -..-+.++|+-. +++.+.++..+-.+++..+...++.
T Consensus 130 A~~il~~~~~~---~~~~vD~~v~Ri~~rlg~~~-~~~~k~~~~k~y~~~~~~l~~~~~~ 185 (207)
T 3fhg_A 130 ASHFLRNVGYF---DLAIIDRHIIDFMRRIGAIG-ETNVKQLSKSLYISFENILKSIASN 185 (207)
T ss_dssp HHHHHHHTTCC---SSCCCCHHHHHHHHHTTSSC-CCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CcceecHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHHHHHH
Confidence 9998775 662 222 111 123345556532 1266778888888887777776554
No 91
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=93.94 E-value=0.018 Score=54.30 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=40.7
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHc-CCCCHHHh-hhc--cCchhhhhhchhhHhhh
Q 012862 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-KNE--DSLTHSQRLGLKYFDDI 342 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~-GirTledL-~~~--~~L~~~q~~Glk~~ed~ 342 (455)
...+.+|.+|+|||||+|.++... |..+|..- ... .+|++.+++|.|..+.|
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rI 139 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERM 139 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 457777789999999999999986 88887743 332 35889999999886654
No 92
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.11 Score=45.33 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCCCcEEEEecCCC---C-------chHHHHHHHHHHhcCCEEEeecCCCccEEEEcC
Q 012862 17 GIFAGMRVFLVEKGV---Q-------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (455)
Q Consensus 17 ~~F~g~~iy~~~~~~---g-------~~R~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~ 65 (455)
.|=+..+|||-.+.. . ..|.+.|++-+...||+|++-++.+|||||+.-
T Consensus 3 ~m~r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR 61 (134)
T 3oq4_A 3 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 61 (134)
T ss_dssp CCCTTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESS
T ss_pred cccccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 356788999965532 2 136688999999999999999999999999853
No 93
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=93.82 E-value=0.047 Score=50.81 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHhhhccCcCHHHHHHHHHc----CCCCHHHhhhc--cCchhhhhhchhhHhhhcc
Q 012862 293 TISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~----GirTledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (455)
.+..|+.+|||||++|+++.+. .++|++||.+. |--....-+|-+.++.+..
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~lk~ 187 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKN 187 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHhhC
Confidence 3445678999999999999862 79999999752 2122344478887777743
No 94
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=93.76 E-value=0.012 Score=64.26 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=42.3
Q ss_pred hhccCcCHHHHHHHHHc-CCCCHHHhhhc--cCchhhhhhchhhHhhhccCcC
Q 012862 298 GEVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIP 347 (455)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirTledL~~~--~~L~~~q~~Glk~~ed~~~~i~ 347 (455)
+.|+|+|+|++.+||+. +|++++||... .+|..+.+||-|..+.|.+.|-
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe 501 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALE 501 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHHH
Confidence 39999999999999999 67999999853 4577788999999998886553
No 95
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=93.61 E-value=0.012 Score=56.43 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012862 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
..+|..|||||++.+.+|.+. | +..++.|.+ ...+.|.+|+|||+++|+++++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~---g-f~sve~L~~----a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREA---G-FESVEDVRG----ADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp --------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHc---C-CCCHHHHHh----CCHHHHHhccCCCHHHHHHHHHH
Confidence 357899999999999988765 2 233555542 23445669999999999999763
No 96
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=93.59 E-value=0.012 Score=64.35 Aligned_cols=61 Identities=28% Similarity=0.404 Sum_probs=46.4
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhhc--cCchhhhhhchhhHhhhccCcCHHHHHHHHHHHH
Q 012862 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirTledL~~~--~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~ 359 (455)
.|+|+|+|++.+||+. +++|+.||... .+|..+.+||-|..+.|.+.|-......+..++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~ 508 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLY 508 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhH
Confidence 8999999999999999 68999999854 3577788999999998876654332222344443
No 97
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=93.55 E-value=0.023 Score=52.66 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=37.9
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-hhhc--cCchhhhhhchhhHhhh
Q 012862 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~-GirTled-L~~~--~~L~~~q~~Glk~~ed~ 342 (455)
...+..|.+|+|||||+|.++... |-.++.+ +.++ ..|++.+|+|-|..+.|
T Consensus 68 k~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 123 (191)
T 1ixr_A 68 LALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERI 123 (191)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 345667779999999999999986 7666654 3333 25788888897775554
No 98
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=93.51 E-value=0.045 Score=58.72 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=41.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHh
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL 322 (455)
...+|.+++|||+++|..|-.-+..-++..|...-.+.. ++++||||+|||+++.. |++..+|+
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~------l~~~~GiG~k~a~~i~~-~l~~~~~~ 154 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD------LTRLKGFGPKRAERIRE-GLALAQAA 154 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTG------GGGSTTCCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCC------cccCCCCCccHHHHHHH-HHHHHHHh
Confidence 357899999999999998755332233444432211122 67999999999999843 44444444
No 99
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=93.23 E-value=0.061 Score=55.14 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=31.8
Q ss_pred HHHhhhccCcCHHHHHHHHHc-CC------CCHHHhhhccCchh--hhh-hchhhHhhh
Q 012862 294 ISLFGEVWGIGPATAQKLYEK-GH------RTLDDLKNEDSLTH--SQR-LGLKYFDDI 342 (455)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~-Gi------rTledL~~~~~L~~--~q~-~Glk~~ed~ 342 (455)
..++++|+||||.+|++|.++ |= -|.+||+.+| +.. +.+ .|++..+.+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedG-IGekqarrI~gl~~l~~~ 524 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDG-LTDAQIRELKGLKTLESI 524 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTT-CCHHHHHHHHTCHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHcc-ccHHHHHHHhhHHHHHHH
Confidence 567889999999999999987 52 5677776533 221 222 355555544
No 100
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=93.19 E-value=0.028 Score=52.53 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=38.3
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-hhhc--cCchhhhhhchhhHhhh
Q 012862 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~-GirTled-L~~~--~~L~~~q~~Glk~~ed~ 342 (455)
...+..|.+|+|||||+|.++... |..+|-+ +.++ ..|++.+|+|-|..+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 124 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERL 124 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 346667779999999999999995 6665544 4433 25888888998875554
No 101
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.95 E-value=0.054 Score=42.05 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.2
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+.+++|||+.++.+|-+.||.|++||-..
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 44889999999999999999999999854
No 102
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.28 Score=48.78 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEecccccCCC-CCCCccEEEeCCCchh-hhhhHHHHHHHHHHcCceee
Q 012862 354 MERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKS-HKGFLSKYVKKLKEMKFLRE 418 (455)
Q Consensus 354 i~~~v~~~~~~~~p~~~v~~~Gs~RRgke-~~gDvDiLit~~d~~~-~~~~l~~lv~~L~~~g~l~~ 418 (455)
+...++++.....|++.|.+-||+++|.- -.+|||++|..|.... ...+|..+-+.|++.|..++
T Consensus 45 ~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~ 111 (323)
T 3nyb_A 45 TISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATE 111 (323)
T ss_dssp HHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCceE
Confidence 34445555666789999999999999976 3689999998876532 34578889999999887653
No 103
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=92.11 E-value=0.097 Score=52.51 Aligned_cols=39 Identities=33% Similarity=0.601 Sum_probs=30.2
Q ss_pred hhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhch
Q 012862 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336 (455)
Q Consensus 298 ~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Gl 336 (455)
..|||||++++++|.+.||+|+.||.+...-.-.+.||.
T Consensus 181 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG~ 219 (356)
T 4dez_A 181 DALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFGP 219 (356)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHCH
T ss_pred HHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhCC
Confidence 589999999999999999999999986432222344553
No 104
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.79 E-value=0.19 Score=37.97 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=34.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH-HHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~ 313 (455)
+.|.+|||||++-+..+-. .-|++..+ ++- .++.+.+| +|.+. |+++|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~--~Fgs~~~i---~~A----s~eeL~~v--ig~~~~A~~I~~ 53 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AAL----SQDELTSI--LGNAANAKQLYD 53 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH--HCSSHHHH---HTC----CHHHHHHH--HSCHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHH--HcCCHHHH---HHC----CHHHHHHH--cCchHHHHHHHH
Confidence 4688999999998887743 44555544 432 23344456 78999 999997
No 105
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=91.43 E-value=0.069 Score=45.42 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhh
Q 012862 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~ 342 (455)
.+..|.++ ||||.++++|.+.||.|+++|.... .|..++++|-...++|
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kI 74 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKI 74 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHH
Confidence 34445455 9999999999999999999998553 4777777775544333
No 106
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=91.20 E-value=0.47 Score=46.44 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred hhhcCCCCCCHHHHHHHHHH---HHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012862 254 DQVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
++|..+ |+|-+ ++.|.++ +..|.+ .++.+..-....+++.|+++|||||+||..+--.
T Consensus 170 e~L~~~-g~g~R-a~~I~~~A~~i~~g~~-~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 170 KDFEEC-TAGFR-AKYLKDTVDRIYNGEL-NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHHHHT-TCGGG-HHHHHHHHHHHHTTSS-CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHc-CCchH-HHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 456553 77865 4445444 445654 3455655566778999999999999999987654
No 107
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.18 E-value=0.12 Score=56.12 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.1
Q ss_pred HHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhh
Q 012862 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (455)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~ 323 (455)
.+..-.+...+.|+ +|||||+.+|++||+.|++|++||.
T Consensus 647 rl~~gv~~e~~~L~-qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 647 RVRDGIKEELLELV-QISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp HHHHTCCGGGHHHH-TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHcCCChhhcchh-hCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 34445556677777 9999999999999999999999998
No 108
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=90.98 E-value=0.37 Score=45.41 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=39.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHH---HhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcC
Q 012862 254 DQVKGLPGIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (455)
++|..+ |++..=++.|.++. ..|.+. ++.+..-....+++.|++|+||||+||..+--.+
T Consensus 104 e~Lr~~-G~~~~KA~~i~~lA~~~~~g~~~-l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 104 DDLRGV-GLSWAKVRTVQAAAAAAVSGQID-FAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSSC-GGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHC-CCcHHHHHHHHHHHHHHHhCCcC-HHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 445443 67665444444443 457653 4555554556688889999999999999887643
No 109
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=90.78 E-value=0.037 Score=52.62 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|.+|||||++.++++.+.. |++..+ .+ -..+.|.+| |||+++|+.+|+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F--GSl~~i---~~----As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF--GSVKKM---KE----ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHh--CCHHHH---Hh----CCHHHHHHc-CCCHHHHHHHHH
Confidence 468999999999999887643 555443 32 134556799 999999999986
No 110
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=90.69 E-value=0.16 Score=52.43 Aligned_cols=40 Identities=30% Similarity=0.371 Sum_probs=30.4
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhch
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Gl 336 (455)
+..+||||++++++|-+.||+|+.||.+...-.-.+.||.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG~ 275 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGI 275 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhCc
Confidence 4689999999999999999999999986432112234554
No 111
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=90.48 E-value=0.57 Score=37.93 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=35.6
Q ss_pred cCCCeEEEEecccccCCCCCC--CccEEEeCCCchhhhhhHHHHHHHHHH--cCceeeeec
Q 012862 365 VLPEVIILCGGSYRRGKASCG--DLDVVIMHPDRKSHKGFLSKYVKKLKE--MKFLREDLI 421 (455)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~g--DvDiLit~~d~~~~~~~l~~lv~~L~~--~g~l~~~L~ 421 (455)
..+...+.+-||+-||..+-+ ||||+|..+++.. .....++...|.+ .|.--+-+.
T Consensus 14 ~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~~~~-~~~~~~l~~~l~~~~~~~~vd~~v 73 (96)
T 1ylq_A 14 DVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFED-RNRKLEFFGKITKKFFDSPFEFHI 73 (96)
T ss_dssp HCTTCEEEEESHHHHCCSSSCCCSEEEEEECGGGGS-HHHHHHHHHHHHHHTTTCSEEEEE
T ss_pred HcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCCCCC-HHHHHHHHHHHHHhhcCCCeEEEE
Confidence 356678999999999998765 9999997654222 1123345555554 344444443
No 112
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=90.40 E-value=0.051 Score=58.71 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhcCCCCC------CHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc--
Q 012862 254 DQVKGLPGI------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-- 325 (455)
Q Consensus 254 ~~l~~lpgI------G~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~-- 325 (455)
++|.+|+|+ |++.++++.+-++.-+-.. -...|--| +|+|||+++|+.|.+ .+.|++.|.++
T Consensus 491 ~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~--------l~r~L~aL-GIp~VG~~~ak~La~-~Fgsle~L~~As~ 560 (615)
T 3sgi_A 491 RDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAP--------LWRVLVAL-SIRHVGPTAARALAT-EFGSLDAIAAAST 560 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccccccccCccchHHHHHHHHHHHhcCCC--------HHHHHHHc-CCCCCCHHHHHHHHH-HcCCHHHHHhCCH
Confidence 567777755 5777777766555333222 23455666 999999999999976 47799999865
Q ss_pred cCchhhhhhchhhHhhhccCcCHHHHH
Q 012862 326 DSLTHSQRLGLKYFDDIKTRIPRHEVE 352 (455)
Q Consensus 326 ~~L~~~q~~Glk~~ed~~~~i~r~Ea~ 352 (455)
..|..+.++|.+..+.|..-+.-++..
T Consensus 561 eeL~~I~GIG~~~A~sI~~ff~~~~n~ 587 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVTEWFAVDWHR 587 (615)
T ss_dssp ---------------------------
T ss_pred HHHhhCCCCCHHHHHHHHHHHcCHHHH
Confidence 368889999998888887766544433
No 113
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=90.39 E-value=0.14 Score=48.36 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHh-CCchhhHHHHhhchhHHHHHhh-hccCcCHHHHHHHHHc-CCCCHHHhhh-c-cCchhhhhhchhh
Q 012862 264 KSMQDHIQEIVTT-GKLSKLEHFEKDEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLDDLKN-E-DSLTHSQRLGLKY 338 (455)
Q Consensus 264 ~~ia~kI~Eil~t-G~~~~le~l~~~~~~~~l~lf~-~I~GvGpktA~~ly~~-GirTledL~~-~-~~L~~~q~~Glk~ 338 (455)
..=|..|.++.+. |. +.++.....+.+++.|+ ++||||||||.-+--. |.. +..- + .-+.-+.++|+-
T Consensus 100 ~~KA~~I~~~a~~ig~---l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~---~~~~VDthv~Ri~~rlg~~- 172 (219)
T 3n0u_A 100 QKRAEFIVENRKLLGK---LKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVE---DLAILDKHVLRLMKRHGLI- 172 (219)
T ss_dssp HHHHHHHHHHGGGTTT---HHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCC---SCCCCCHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCC---CeeeecHHHHHHHHHcCCC-
Confidence 4455556555542 32 34444556677999999 9999999999988754 552 1111 1 112234455542
Q ss_pred HhhhccCcCHHHHHHHHHHHHHHhhh
Q 012862 339 FDDIKTRIPRHEVEQMERLLQKAGEE 364 (455)
Q Consensus 339 ~ed~~~~i~r~Ea~~i~~~v~~~~~~ 364 (455)
+.+.+..+...-.+++..+.+.+.+
T Consensus 173 -~~~~k~~t~k~y~~ie~~~~~~a~~ 197 (219)
T 3n0u_A 173 -QEIPKGWSKKRYLYVEEILRKVAEA 197 (219)
T ss_dssp -SSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -CcCcCcCCHHHHHHHHHHHHHHHHH
Confidence 2233455666666666666665543
No 114
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=90.26 E-value=0.48 Score=48.65 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEecccccCCCC-CCCccEEEeCCCchhhhhhHHHHHHHHHHcC
Q 012862 354 MERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414 (455)
Q Consensus 354 i~~~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g 414 (455)
+...|+.+.....|++.|.+.||+++|.-+ ..|||++|..+.......++.++.+.|++.+
T Consensus 68 v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~~ 129 (405)
T 4e8f_A 68 ALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEG 129 (405)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 344445555567899999999999999876 7899999987764333457888888888763
No 115
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=90.20 E-value=0.12 Score=51.68 Aligned_cols=29 Identities=38% Similarity=0.396 Sum_probs=26.3
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 208 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGINKLVDTLSI 208 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCCBGGGGGSS
T ss_pred CCcccccCHHHHHHHHHcCCchHHHHHCC
Confidence 46899999999999988899999999864
No 116
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.13 E-value=0.11 Score=56.64 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=39.3
Q ss_pred HhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhh
Q 012862 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 286 ~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~ 342 (455)
....+...+.|+ +|||||..+|++||+.|++|+.||.+.. .+..+.++|-+-++++
T Consensus 638 ~~gv~~e~~~L~-qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~ 695 (720)
T 2zj8_A 638 KYGIREELIPLM-QLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAI 695 (720)
T ss_dssp HHTCCGGGGGGT-TSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHH
T ss_pred HcCCCccchhhh-hCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHH
Confidence 334445556666 9999999999999999999999998643 2333455555444443
No 117
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=89.98 E-value=0.19 Score=53.21 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=30.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhch
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Gl 336 (455)
+..+||||++++++|.+.||+|+.||.....-.-.+.||.
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCH
T ss_pred hhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhCh
Confidence 3588999999999999999999999986432222334554
No 118
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=89.72 E-value=0.28 Score=40.10 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.9
Q ss_pred HHHhhhccCcCHHHHHHHHHc-----CCCCHHHhhhccCchhhhhhchhhHhhh
Q 012862 294 ISLFGEVWGIGPATAQKLYEK-----GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (455)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~-----GirTledL~~~~~L~~~q~~Glk~~ed~ 342 (455)
...|..|+|||+++|+++.+. .+.+++||.+ ..++|.+.++.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~------v~Gig~k~~~~l 86 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER------VEGITGKQMESF 86 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHh------CCCCCHHHHHHH
Confidence 344669999999999999962 4788888743 345666665554
No 119
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=89.25 E-value=0.076 Score=57.16 Aligned_cols=49 Identities=29% Similarity=0.337 Sum_probs=41.7
Q ss_pred hhccCcCHHHHHHHHHcCC-CCHHHhhh--ccCchhhhhhchhhHhhhccCc
Q 012862 298 GEVWGIGPATAQKLYEKGH-RTLDDLKN--EDSLTHSQRLGLKYFDDIKTRI 346 (455)
Q Consensus 298 ~~I~GvGpktA~~ly~~Gi-rTledL~~--~~~L~~~q~~Glk~~ed~~~~i 346 (455)
++|.|+|++++++||+.|+ +++.||.. ...|..+.+||-|..+.|...|
T Consensus 449 mdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 3899999999999999975 99999974 3457788899999999987655
No 120
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=89.20 E-value=0.39 Score=47.07 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=44.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCC
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gir 317 (455)
++|..+ |++..=++.|.++.+.| .++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 173 ~~Lr~~-G~~~rKa~~i~~~A~~g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 173 EGLREC-GLSRRKAELIVEIAKEE---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHTCS---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHc-CCCHHHHHHHHHHHHCC---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 345544 78888788888888775 4444444344568888899999999999998876555
No 121
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=89.02 E-value=1.5 Score=36.46 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCCeEEEEecccccCCC-CCCCccEEEeCCCchhhhhhHHHHHHHHHHc
Q 012862 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413 (455)
Q Consensus 346 i~r~Ea~~i~~~v~~~~~~~~p~~~v~~~Gs~RRgke-~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~ 413 (455)
++..+.+.+..++++ ..+...+.+-|||-||.. ..+||||+|..+++... ..+.++...|.+.
T Consensus 9 l~~~~~~~i~~~l~~----~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~-~~~~~l~~~l~~~ 72 (114)
T 1no5_A 9 IKSEELAIVKTILQQ----LVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF-LARDRLKEAFSES 72 (114)
T ss_dssp SCHHHHHHHHHHHHH----HCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH-HHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH----hCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCCCCH-HHHHHHHHHHHhc
Confidence 344455555555554 234458999999999974 44899999976543322 2234566777765
No 122
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=89.02 E-value=0.29 Score=47.04 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCc--cccccchHHHHHhc---CC------CCCcccc
Q 012862 40 RQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKG--SVIRYQWLEDSLRL---GE------KVSEDLY 106 (455)
Q Consensus 40 ~~li~~~Gg~V~~~ls--~~VTHVV~~~~~~~l~~l~~~~~~~~~~--~lV~~~Wl~es~k~---g~------lvdee~y 106 (455)
++.++..|-.|++..+ ..++|+++..--|-.+.++. + .++| .+|+.+|+++|++. |+ +++.++|
T Consensus 40 ~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~s--L-a~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY 116 (256)
T 3t7k_A 40 IEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKS--L-SFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFDY 116 (256)
T ss_dssp HHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHH--T-TSTTCCEEECTHHHHHHHHHHC-------CCCCCSSTT
T ss_pred HHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHH--h-ccCccceEeCHHHHHHHHHHhhcCCcccccccCChhhc
Confidence 5789999999999985 47999999764332222221 1 2334 59999999999999 88 8889999
Q ss_pred ccc
Q 012862 107 RIK 109 (455)
Q Consensus 107 ~l~ 109 (455)
.+.
T Consensus 117 ~L~ 119 (256)
T 3t7k_A 117 EIN 119 (256)
T ss_dssp BCT
T ss_pred cCC
Confidence 975
No 123
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=88.87 E-value=0.15 Score=51.14 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=26.6
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~ 326 (455)
+..+||||++++++|.+.||+|+.||.+..
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~ 210 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSKN 210 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCCBGGGGGGSC
T ss_pred cccccCcCHHHHHHHHHcCCccHHHHhcCC
Confidence 468899999999999888999999998643
No 124
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=88.71 E-value=0.23 Score=52.70 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=64.1
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEEecc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~~~p~~~v~~~Gs 376 (455)
+..|||||++|+++|-..||+|+.||..... .-...||...... +.+.+.-+.+. .|. .
T Consensus 340 V~kl~GIG~~t~~~L~~lGI~TigDL~~~~~-~L~~~fG~~~~~~----------------l~~~a~Gid~~-~v~---~ 398 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKALGIITCTELYQQRA-LLSLLFSETSWHY----------------FLHISLGLGST-HLT---R 398 (517)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHHHHHH-HHHHHSCHHHHHH----------------HHHHHTTCCCC-SCC---C
T ss_pred hhhhccccHHHHHHHHHhCCCcHHHHHhhHH-HHHHHhChHHHHH----------------HHHHHcCCCcc-ccc---C
Confidence 3579999999999999999999999986311 1123355432211 11111111111 110 1
Q ss_pred cccCCCCCCCccEEE-eCCCc--hhhhhhHHHHHHHHHHcCceeeeecccccCCcch
Q 012862 377 YRRGKASCGDLDVVI-MHPDR--KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEETV 430 (455)
Q Consensus 377 ~RRgke~~gDvDiLi-t~~d~--~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~~~ 430 (455)
.+-.|..+....|-- +..+. .....+...+..+|+++|+....+++..+..++.
T Consensus 399 ~~~~KSi~~e~tf~~~~~~e~l~~~l~~La~~l~~rLr~~~~~~~~vtlklk~~~f~ 455 (517)
T 3pzp_A 399 DGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFE 455 (517)
T ss_dssp CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHTTTCCBSCEEEEEEETTSC
T ss_pred CCCCccceeEEEcccccCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEecCCc
Confidence 222344433333321 11111 1134578889999999999999998877655543
No 125
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=88.62 E-value=0.17 Score=47.64 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=23.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~TigdL~~~ 214 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQKLRDILSK 214 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBTTC----
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHHCC
Confidence 46889999999999999999999999853
No 126
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=88.46 E-value=0.4 Score=53.24 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=42.4
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
+.++|..|||||+..|+.|.++.+ .|.+...++|. +|+|+|+++..++-..
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~------------~V~giG~k~~ekl~~F 557 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELK------------KVSRLGEKTFEQAAGF 557 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGG------------GSTTCCHHHHHHHGGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHH------------hcCCCCHHHHHHhhhe
Confidence 457899999999999999999975 57777776653 7999999999987653
No 127
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=88.37 E-value=0.47 Score=38.00 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=35.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH-HHHHHHc
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYEK 314 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~~ 314 (455)
..|..|||||++-+..+-. .-|.+..+ ++- .++.|..| ||.+. |+++|+.
T Consensus 18 s~L~~IpGIG~kr~~~LL~--~FgSl~~i---~~A----S~eEL~~v--ig~~~~A~~I~~~ 68 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AAL----SQDELTSI--LGNAANAKQLYDF 68 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH--HSSCHHHH---HHS----CHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH--HcCCHHHH---HHC----CHHHHHHH--hCchHHHHHHHHH
Confidence 4688999999998887753 45665554 332 23334456 78999 9999984
No 128
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=87.95 E-value=0.29 Score=45.63 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=36.5
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhh
Q 012862 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~ 342 (455)
...+++.|+|||+++|+.|.+. +.|+++|.++. .|....++|.+..+.|
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~i 210 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEI 210 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 4455679999999999999986 45688887543 4667777887665554
No 129
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=87.88 E-value=0.27 Score=48.85 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCEEEeec-CCCccEEEEcCC--hH-HHHHHHHHhhhccCccccccchHHHHHhc
Q 012862 36 LQIWRQKLVQMGATVEEKL-SKKVTHVLAMDL--EA-LLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (455)
Q Consensus 36 ~~~l~~li~~~Gg~V~~~l-s~~VTHVV~~~~--~~-~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (455)
+..|++.+.+.|+.++ .+ ++.+||||+... .. -.+.+.. +-. +.+||+.+||.+..+.
T Consensus 126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~A--LI~-gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYA--FLK-KTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHH--HHT-TCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHH--HHC-CCcEecHHHHHHHHHh
Confidence 4459999999999999 77 788999999631 11 0011111 111 5699999999997544
No 130
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=87.58 E-value=0.78 Score=43.39 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=38.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHH---HhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcC
Q 012862 254 DQVKGLPGIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (455)
++|..+ |++..=|+.|.++. ..|.+ .++.+..-....+++.|++++||||+||..+--.+
T Consensus 96 e~Lr~~-G~~~~KA~~I~~~A~~i~~~~~-~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 96 EALRQA-GVSKRKIEYIRHVCEHVESGRL-DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSS-CHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 455443 67776555555444 34543 23445443445688888999999999999987643
No 131
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=87.46 E-value=0.34 Score=50.05 Aligned_cols=114 Identities=10% Similarity=0.057 Sum_probs=59.6
Q ss_pred hhhccCcCHHHHHH-HHHcCCCCHHHhhhccCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEE--
Q 012862 297 FGEVWGIGPATAQK-LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC-- 373 (455)
Q Consensus 297 f~~I~GvGpktA~~-ly~~GirTledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~~~~~~p~~~v~~-- 373 (455)
+..|||||++++++ |...||+|+.||.....-.-.+.||-+. ...+.+.+.-+++. .|..
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG~~~----------------g~~L~~~a~G~d~~-~v~~~~ 317 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKN----------------GSWLYAMCRGIEHD-PVKPRQ 317 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHCHHH----------------HHHHHHHTTTCCCC-CCCCBC
T ss_pred HHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhCccH----------------HHHHHHHhhCCCCc-ccCCCC
Confidence 35899999999887 5667999999998643222234466221 11111111111111 0100
Q ss_pred -ecccccCCCCCCCccEEEeCCCc--hhhhhhHHHHHHHHHHc----CceeeeecccccCCcc
Q 012862 374 -GGSYRRGKASCGDLDVVIMHPDR--KSHKGFLSKYVKKLKEM----KFLREDLIFSTHSEET 429 (455)
Q Consensus 374 -~Gs~RRgke~~gDvDiLit~~d~--~~~~~~l~~lv~~L~~~----g~l~~~L~~~~~~~~~ 429 (455)
-=|+-..+....|.|+ +..+. .....+...+..+|+++ |.....|+++.+..++
T Consensus 318 ~~ksi~~~~tf~~~~~i--~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~ 378 (435)
T 4ecq_A 318 LPKTIGCSKNFPGKTAL--ATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGD 378 (435)
T ss_dssp SCSCEEEEEECCGGGCE--EEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTC
T ss_pred CCCeeeeeEEcCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCC
Confidence 0111111122222221 11111 12446778888999987 8999999888765443
No 132
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=87.38 E-value=0.31 Score=50.34 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=26.8
Q ss_pred hhhccCcCHHHHHHHHH--cCCCCHHHhhhc
Q 012862 297 FGEVWGIGPATAQKLYE--KGHRTLDDLKNE 325 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~--~GirTledL~~~ 325 (455)
+..+||||++++++|.+ .||+|+.||.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 46899999999999999 899999999875
No 133
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=87.25 E-value=1.4 Score=43.72 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcCCCeEEEEecccccCCCC-CCCccEEEeCCCchhhhhhHHHHHHHHHHcCc
Q 012862 355 ERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 415 (455)
Q Consensus 355 ~~~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~ 415 (455)
-+.|+.+.....|+++|.+-|||+-|--+ .+|||+.|..+.......++..+...+...++
T Consensus 41 ~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (349)
T 4fh3_A 41 LDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGF 102 (349)
T ss_dssp HHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHHHHHHHhhcc
Confidence 44445555567899999999999998754 46999999877665555566667777766654
No 134
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=86.94 E-value=0.48 Score=51.44 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=35.0
Q ss_pred HHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 012862 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (455)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~ 326 (455)
.+....+...+.|+ +|||||..+|+++|+.|++|+.||.+..
T Consensus 622 ri~~gv~~~~~~L~-qlp~v~~~~ar~l~~~g~~s~~~l~~~~ 663 (702)
T 2p6r_A 622 RIKHGVKEELLELV-RIRHIGRVRARKLYNAGIRNAEDIVRHR 663 (702)
T ss_dssp HHHHTCCGGGHHHH-TSTTCCHHHHHHHHTTTCCSHHHHHHTH
T ss_pred HHHcCCCcchHhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhhh
Confidence 44555666677777 9999999999999999999999998543
No 135
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=86.83 E-value=0.2 Score=50.57 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=26.7
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~ 326 (455)
+..+||||++++++|.+.||+|+.||.+..
T Consensus 181 v~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 210 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSKN 210 (362)
T ss_dssp STTSTTCCSTTHHHHHHTTCCBGGGGTTSC
T ss_pred hhhccCCCHHHHHHHHHcCCChHHHHhcCC
Confidence 357999999999999999999999998643
No 136
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=85.64 E-value=0.39 Score=48.81 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=33.8
Q ss_pred hchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhhcc
Q 012862 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (455)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~~~ 344 (455)
...+...+++.+||+||++.|++|.+. |-||+.|.++. .|....|+|-+....|.+
T Consensus 308 ~VsprGyRiLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 308 LVSARGYRLLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp BCCCCSHHHHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred ccCchHHHHHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 334455667777777777777777763 44666666542 355556666666555543
No 137
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=85.57 E-value=2.2 Score=42.13 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=25.9
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~ 324 (455)
|.++||||+..++++++.|++|++||..
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4599999999999999999999999985
No 138
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=84.29 E-value=0.52 Score=44.17 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=19.9
Q ss_pred hHHHHHhhhccCcCHHHHHHHHH
Q 012862 291 VRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..+++.|.++||||||+|+++--
T Consensus 22 ~~LI~~l~~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 22 AKLIEELSKLPGIGPKTAQRLAF 44 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHH
Confidence 35788999999999999999853
No 139
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=84.13 E-value=0.2 Score=47.54 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhhhchhhHhhhcc
Q 012862 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (455)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (455)
-..|..|+|||+++|++|.+. +.|++.|.++ ..|... ++|.+..+.|.+
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp -----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHHH
Confidence 345679999999999999984 6778888765 357777 888777666543
No 140
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=83.77 E-value=0.81 Score=43.18 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.4
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
-..|..|+|||+++|+.|.+. +.|++.|.++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~A 197 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGSLENIRSA 197 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCCHHHHHhC
Confidence 345679999999999999996 3389998865
No 141
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=83.28 E-value=1 Score=34.72 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=38.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
+++..|||||..++.+..| .|. .-+|.|..- ..+-|..|.|++..+|.++..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e---~Gi-~TvedlA~~----~~~eL~~i~gise~kA~~ii~ 58 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAA---RGV-CTLEDLAEQ----GIDDLADIEGLTDEKAGALIM 58 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHT---TTC-CSHHHHHTS----CHHHHHTSSSCCHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHH---cCC-CcHHHHHcC----CHHHHHHccCCCHHHHHHHHH
Confidence 5688999999999887654 444 456666432 344556899999999999985
No 142
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=82.62 E-value=0.66 Score=43.87 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.0
Q ss_pred hHHHHHhhhccCcCHHHHHHHHH
Q 012862 291 VRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..+++.|.++||||||+|+++--
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~ 30 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAF 30 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHHH
Confidence 45788999999999999999853
No 143
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=82.10 E-value=0.9 Score=47.15 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=30.1
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhchh
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLK 337 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Glk 337 (455)
+..|||||++++++|-..||+|+.||.... -.-.+.||.+
T Consensus 284 v~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~~fG~~ 323 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLLFSET 323 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHHHSCHH
T ss_pred HHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHHHhChH
Confidence 468999999999999888999999998642 1123346644
No 144
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=81.55 E-value=0.97 Score=42.33 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc
Q 012862 292 RTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
.+++.|++++||||+||..+--.
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 35666779999999999988765
No 145
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=81.03 E-value=1.7 Score=40.76 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCchhhHHHHh-hchhHHHHHhh-hccCcCHHHHHHHHHc-CCCCHH--HhhhccCchhhhhhchhh
Q 012862 264 KSMQDHIQEIVTTGKLSKLEHFEK-DEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLD--DLKNEDSLTHSQRLGLKY 338 (455)
Q Consensus 264 ~~ia~kI~Eil~tG~~~~le~l~~-~~~~~~l~lf~-~I~GvGpktA~~ly~~-GirTle--dL~~~~~L~~~q~~Glk~ 338 (455)
..=|..|.++.+-| .-++.+.. ...+.+++.|+ ++||||||||.-+-.. |...+- |.- -..-.+++|+-.
T Consensus 94 ~~KA~~I~~~a~~~--~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDth---v~Ri~~RlG~~~ 168 (214)
T 3fhf_A 94 RKRAEYIVLARRFK--NIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRH---ILRELYENNYID 168 (214)
T ss_dssp HHHHHHHHHHGGGC--CHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHH---HHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHhh--HHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHH---HHHHHHHcCCCC
Confidence 33456666665522 12344443 24567889898 9999999999986543 553222 111 122344556432
Q ss_pred HhhhccCcCHHHHHHHHHHHHHHhhhc
Q 012862 339 FDDIKTRIPRHEVEQMERLLQKAGEEV 365 (455)
Q Consensus 339 ~ed~~~~i~r~Ea~~i~~~v~~~~~~~ 365 (455)
...+.+|...-.+++..+...++.+
T Consensus 169 --~~~k~lt~~~y~e~~~~l~~~g~~~ 193 (214)
T 3fhf_A 169 --EIPKTLSRRKYLEIENILRDIGEEV 193 (214)
T ss_dssp --SCCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred --CCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1235667777777777777665543
No 146
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=80.49 E-value=0.78 Score=45.04 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+|+|||||||.+|.++ +.|||.|.+.
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~ 232 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQ 232 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHH
Confidence 4899999999999996 4589999754
No 147
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=80.41 E-value=4 Score=33.91 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhcCCCe-EEEEecccccCCC-CCCCccEEEeCCC
Q 012862 354 MERLLQKAGEEVLPEV-IILCGGSYRRGKA-SCGDLDVVIMHPD 395 (455)
Q Consensus 354 i~~~v~~~~~~~~p~~-~v~~~Gs~RRgke-~~gDvDiLit~~d 395 (455)
+.+++..+... .|++ .+.+-||+-||.. ..+||||+|..++
T Consensus 19 l~~~~~~l~~~-~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 19 AKEIVEEVASS-FPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHH-cCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 45566665543 4676 6899999999985 3589999996544
No 148
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=80.41 E-value=3 Score=41.31 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=26.0
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~ 324 (455)
|.++||||+..++++++.|++|++||..
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 190 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIME 190 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHh
Confidence 4599999999999999999999999985
No 149
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=80.04 E-value=1.3 Score=41.80 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=35.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCH-HHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP-ATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp-ktA~~ly~ 313 (455)
..|.+|||||++.++++.+. -|++ +.+.+.. .+.|.+| ||+ ++|+.+|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~--FgSl---~~i~~As----~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH--FGSL---ENIRSAS----LEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH--HCSH---HHHHTSC----HHHHHHH--HTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHH--cCCH---HHHHhCC----HHHHHHH--hChHHHHHHHHH
Confidence 45899999999999988774 3554 4444322 3445677 999 99999986
No 150
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=79.78 E-value=2.7 Score=33.96 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEecccccCCCC-CCCccEEEeCCCchhhhhhHHHHHHHHHH
Q 012862 354 MERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412 (455)
Q Consensus 354 i~~~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~ 412 (455)
+.+.+..++... +-..+.+-|||-||..+ ..||||+|..+++..... +..+...|.+
T Consensus 12 l~~~i~~l~~~~-~v~~v~LFGS~arG~~~~~SDiDl~V~~~~~~~~~~-~~~l~~~l~~ 69 (98)
T 1wot_A 12 RREAVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLD-HARLKLALEG 69 (98)
T ss_dssp HHHHHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCCSSCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 556666655443 33368899999999864 589999995543322222 3456666664
No 151
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=79.72 E-value=3.9 Score=39.99 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHHhhh-ccCcCHHHHHHHHHc
Q 012862 294 ISLFGE-VWGIGPATAQKLYEK 314 (455)
Q Consensus 294 l~lf~~-I~GvGpktA~~ly~~ 314 (455)
++.|++ ++|||++||..+--.
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 455556 999999999987654
No 152
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=79.45 E-value=0.38 Score=51.99 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHhhhccCcCHHHHHHHHHcC-CCCHHHhhh--ccCchhhhhh------chhhHhhhccCcCHHHHHHHHHHHHHHh
Q 012862 295 SLFGEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRL------GLKYFDDIKTRIPRHEVEQMERLLQKAG 362 (455)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~G-irTledL~~--~~~L~~~q~~------Glk~~ed~~~~i~r~Ea~~i~~~v~~~~ 362 (455)
+.| +|.|+|++++++|++.| |+++.||.. ...|..+.+| |-|..+.|...|-...-..+..++..+.
T Consensus 458 ~am-dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aLG 533 (615)
T 3sgi_A 458 NGL-DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALS 533 (615)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred Ccc-CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHcC
Confidence 345 89999999999999997 699999863 3446666655 5788899888886655555666665543
No 153
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=78.90 E-value=1.7 Score=35.49 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
|+.+|+.||+||+++++...++ -+.-+++|+..-+..+..-+... |..|-. ..||.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~-~~L~a 57 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRIWEN-DSSVCM-SELYA 57 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHTT-CTTCCH-HHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHHHHH-CCCCCH-HHHHH
Confidence 5678999999999998876544 45667778776666665555444 555544 55554
No 154
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=78.73 E-value=0.97 Score=45.26 Aligned_cols=26 Identities=31% Similarity=0.714 Sum_probs=21.9
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+|||||||||.+|.++ +.|||.+.+.
T Consensus 236 gipGiG~KtA~kll~~-~gsle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Confidence 6999999999999997 2389998753
No 155
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=78.36 E-value=1.3 Score=41.63 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 012862 293 TISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (455)
+++.|++++|||++||..+--.
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHH
Confidence 5667779999999999987653
No 156
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=78.10 E-value=2.6 Score=44.54 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=41.1
Q ss_pred CCCeEEEEecccccCCCC-CCCccEEEeCCCchhhhhhHHHHHHHHHHcCceee
Q 012862 366 LPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418 (455)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~ 418 (455)
.++++|.+.||||-|--. .+|||+++..|.......+|..+.+.|++...+++
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~v~~ 145 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVKD 145 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTTEEE
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCccCce
Confidence 467899999999998753 57999999877654445678888899988766554
No 157
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=77.56 E-value=2.7 Score=42.35 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=37.3
Q ss_pred hcCCCCCCHHHHHHHHHHH---HhCC--chhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcC
Q 012862 256 VKGLPGIGKSMQDHIQEIV---TTGK--LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil---~tG~--~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (455)
|..+ |+|.+ ++.|.++. ..|. --.++.+..-....+++.|++|+||||+||..+--.+
T Consensus 211 Lr~~-Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 211 LRKL-GLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHT-TCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHc-CCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4443 55654 55555443 3332 1235666554556789999999999999999987643
No 158
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=77.19 E-value=1.7 Score=49.59 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=38.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (455)
..|.-|+|||++.|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 765 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHH------------HTTSSCHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH------------hcCCccHHHHHhcc
Confidence 568899999999999999998 4 68887666553 68999999877654
No 159
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=77.19 E-value=2.4 Score=42.37 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhcCCCeEEEEecccc-cCC-CCCCCccEEEeCCC----ch-----------hhhhhHHHHHHHHHHcCce
Q 012862 354 MERLLQKAGEEVLPEVIILCGGSYR-RGK-ASCGDLDVVIMHPD----RK-----------SHKGFLSKYVKKLKEMKFL 416 (455)
Q Consensus 354 i~~~v~~~~~~~~p~~~v~~~Gs~R-Rgk-e~~gDvDiLit~~d----~~-----------~~~~~l~~lv~~L~~~g~l 416 (455)
++.+++. ..|+++|.+-|||+ -|- .-.+|||++|..+. +. ....+|.++-+.|++.++.
T Consensus 56 l~~~i~~----~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~ 131 (353)
T 2ikf_A 56 VLDCVAA----VDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLS 131 (353)
T ss_dssp HHHHHHH----HCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH----HCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 4555544 58999999999998 665 34689999996542 10 0145777788888887765
Q ss_pred ee
Q 012862 417 RE 418 (455)
Q Consensus 417 ~~ 418 (455)
.+
T Consensus 132 ~~ 133 (353)
T 2ikf_A 132 WN 133 (353)
T ss_dssp SE
T ss_pred Cc
Confidence 43
No 160
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=76.67 E-value=4.3 Score=43.05 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=40.5
Q ss_pred CeEEEEecccccCCC-CCCCccEEEeCCCchhhhhhHHHHHHHHHHcCceee
Q 012862 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418 (455)
Q Consensus 368 ~~~v~~~Gs~RRgke-~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~ 418 (455)
+++|.+.||||-|-- -.+|||+++..|.......+|..+.+.|++.+.+++
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~v~~ 132 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELDE 132 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTEEE
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCCCce
Confidence 789999999999864 358999999887654445788889999998766654
No 161
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=76.33 E-value=1.3 Score=41.46 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.3
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcCC
Q 012862 292 RTISLFGEVWGIGPATAQKLYEKGH 316 (455)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~Gi 316 (455)
.+++.|+++|||||+||..+--.++
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 4677777999999999999886533
No 162
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=74.13 E-value=4.4 Score=37.82 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 012862 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (455)
Q Consensus 232 r~~aY~rAa~~L~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (455)
|+..-.++|..+. .+...+. ..++|..|||||+.+|+.|.-+. -|.-. + -....+.+.+.++.|+.
T Consensus 85 kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a-~~~~~----~--~vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHF----P--ILDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCSC----C--CCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHh-CCCCc----c--eeCHHHHHHHHHHcCCC
Confidence 6666677776664 3433333 46889999999999999987554 34321 1 13344666666666654
No 163
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=73.76 E-value=3.9 Score=40.64 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-
Q 012862 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK- 314 (455)
Q Consensus 236 Y~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~- 314 (455)
.......|..+| +..|||||++++++...+ -+..+.+|.+-.+..+.+.| |+.++.++|+.
T Consensus 168 ~~~~~~~L~~lp--------v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a 229 (352)
T 1jx4_A 168 DEEVKRLIRELD--------IADVPGIGNITAEKLKKL----GINKLVDTLSIEFDKLKGMI------GEAKAKYLISLA 229 (352)
T ss_dssp HHHHHHHHHHSB--------GGGSTTCCHHHHHHHHTT----TCCBGGGGGSSCHHHHHHHH------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCcccccCHHHHHHHHHc----CCchHHHHHCCCHHHHHHhc------ChhHHHHHHHHh
Confidence 344455555554 667899999988876543 35666667665566666677 77878888875
Q ss_pred -CCCC
Q 012862 315 -GHRT 318 (455)
Q Consensus 315 -GirT 318 (455)
|+..
T Consensus 230 ~G~d~ 234 (352)
T 1jx4_A 230 RDEYN 234 (352)
T ss_dssp TTCCC
T ss_pred CCCCC
Confidence 8854
No 164
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=73.62 E-value=1.6 Score=39.78 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=49.2
Q ss_pred HHHHHHhcCCEEEe-ecCCCccEEEEcCChH---HHHHHHHHhhhccCccccccchHHHHHhcCCCCCcccccccc
Q 012862 39 WRQKLVQMGATVEE-KLSKKVTHVLAMDLEA---LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110 (455)
Q Consensus 39 l~~li~~~Gg~V~~-~ls~~VTHVV~~~~~~---~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lvdee~y~l~~ 110 (455)
..+-+.--|++-.. .+.-+.||.|+.|.+. ..+..+.+ ....+||..+|+-.|--+++.|-...|-+..
T Consensus 183 isqclshigarplqrhvaidtthfvcndldneesneelirak---hnnipivrpewvracevekrivgvrgfylda 255 (290)
T 4gns_A 183 ISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAK---HNNIPIVRPEWVRACEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp HHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHH---HTTCCEECTHHHHHHHHTTSCCCSGGGBTTS
T ss_pred HHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhh---ccCCCccCHHHHHHHhhhheeeeeeeEEEcc
Confidence 46667777887554 3467789999976542 11222221 2367999999999999999999999988864
No 165
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=73.52 E-value=1.8 Score=43.50 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred hhccCcCHHHHHHHHHc-CCCCHHHhhh
Q 012862 298 GEVWGIGPATAQKLYEK-GHRTLDDLKN 324 (455)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirTledL~~ 324 (455)
-+|+|||+|||.+|.++ |-.||+.+.+
T Consensus 228 pgv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred CCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 37999999999999998 6678988874
No 166
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=72.87 E-value=2.6 Score=49.05 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (455)
..|.-|+|||++.|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 762 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 762 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH------------HTTCSCHHHHHHHG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh------------hCCCccHHHHHhcc
Confidence 568899999999999999998 4 58887666553 68999998866654
No 167
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=72.52 E-value=4.4 Score=48.92 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.6
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
|.+|||||+.+|+++|+.||+|+.||.+.
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~~ 1587 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIMEM 1587 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHSS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHhC
Confidence 45999999999999999999999999854
No 168
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=72.02 E-value=2.8 Score=38.81 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc
Q 012862 292 RTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
.+++.|++++||||+||..+--.
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 45667779999999999988754
No 169
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=71.91 E-value=1.8 Score=43.02 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=21.7
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+|+|||||||.+|.++ +.|++.+.+.
T Consensus 239 Gv~GiG~KtA~kLl~~-~gsle~i~~~ 264 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT-YGDIFRALKA 264 (336)
T ss_dssp CCTTCCHHHHHHHHHH-HSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHh
Confidence 7999999999999997 2379888754
No 170
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=71.39 E-value=2 Score=42.51 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=22.3
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhh-hc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLK-NE 325 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~-~~ 325 (455)
+|||||||||.+|.++ .|++.+. +.
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~~~~ 254 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVLKKE 254 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHHHHH
Confidence 7999999999999998 8999986 53
No 171
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.22 E-value=1 Score=44.93 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=34.6
Q ss_pred HHHhhhccCcCHHHHHHHHHc----CCCCHHHhhhcc---C-chhhhhhchhhHhhhc
Q 012862 294 ISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNED---S-LTHSQRLGLKYFDDIK 343 (455)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~----GirTledL~~~~---~-L~~~q~~Glk~~ed~~ 343 (455)
+..+++|||||+++|+++.+- -+..+++|+..- . |+.+.|+|.+....|-
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 334679999999999999863 457788885331 1 3466677777666653
No 172
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=70.53 E-value=4.5 Score=37.68 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHH
Q 012862 218 GKLINIYRALGED-RRSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 218 ~~la~~~e~~g~~-~r~~aY~rAa~~L~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
++|.++.+-.|=. .|+..-..+|..+.. +...+ ...++|..|||||+.+|+.|.-+
T Consensus 76 e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 76 SEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHH
Confidence 3444444333432 266666677766643 33333 34688999999999999998654
No 173
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=69.96 E-value=5.2 Score=42.14 Aligned_cols=53 Identities=30% Similarity=0.550 Sum_probs=40.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+++++++..+ | +.-+.+|.+-.+..+.+.| |++++..||+. |+..
T Consensus 317 V~~l~GIG~~t~~kL~~l---G-I~TigDLa~~~~~~L~~~f------G~~~g~~L~~~a~GiD~ 371 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASL---G-IKTCGDLQYMTMAKLQKEF------GPKTGQMLYRFCRGLDD 371 (504)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCBHHHHTTSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred hhHhhCcCHHHHHHHHHc---C-CCcHHHHHhccHHHHHHhh------ChhHHHHHHHHhcCCCc
Confidence 678999999999988765 3 5666677765666666777 78899999973 8853
No 174
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=69.82 E-value=3.6 Score=33.26 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.2
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 012862 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (455)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirTledL~~ 324 (455)
-.+.||||||..+++|-++||..--.|..
T Consensus 19 ~V~evpGIG~~~~~~L~~~Gf~kAy~lLG 47 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERGFDKAYVVLG 47 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred CcccCCCcCHHHHHHHHHcCccHHHHHHH
Confidence 35799999999999999999998777763
No 175
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=69.00 E-value=2.2 Score=48.70 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=31.9
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c---CCCCHHHhhhccCchhhhhhchhhHhh
Q 012862 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKNEDSLTHSQRLGLKYFDD 341 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~---~---GirTledL~~~~~L~~~q~~Glk~~ed 341 (455)
...+|+.|+||||++|+.+.+ + .+.|.+||.+- .++|-+.|+.
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v------~~iG~k~fe~ 763 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH------NILHKTIFMN 763 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHT------TSSCHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhc------CCccHHHHHh
Confidence 577888999999999999952 2 67999999863 3455554444
No 176
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=68.61 E-value=1.9 Score=43.10 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=33.2
Q ss_pred HhhhccCcCHHHHHHHHHc----CCCCHHHhhhcc------CchhhhhhchhhHhhh
Q 012862 296 LFGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 296 lf~~I~GvGpktA~~ly~~----GirTledL~~~~------~L~~~q~~Glk~~ed~ 342 (455)
-+++|||||+++|+++.+- -+.-+++|+.+. .|..+.|+|.+....|
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l 114 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKF 114 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHH
Confidence 3679999999999998863 446777777542 2556667776665554
No 177
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=68.33 E-value=5.7 Score=30.81 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (455)
+++.+++|+|++..+.|.+.|+.
T Consensus 41 ~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 41 EDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999863
No 178
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=68.03 E-value=1.6 Score=43.98 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=32.5
Q ss_pred hhhccCcCHHHHHHHHHc----CCCCHHHhhhcc------CchhhhhhchhhHhhh
Q 012862 297 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~----GirTledL~~~~------~L~~~q~~Glk~~ed~ 342 (455)
+++|||||+++|+++.+- -+..+++|+.+. .|..+.|+|.+....|
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l 118 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRW 118 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHH
Confidence 679999999999998863 557888887521 2555666665555544
No 179
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=67.89 E-value=2.5 Score=39.57 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=26.6
Q ss_pred Cccccch-hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 012862 247 PFKIESA-DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (455)
Q Consensus 247 ~~~i~s~-~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (455)
|.+|+.+ +++..|||||++.|.++.-.|-.-.-..++.|
T Consensus 18 ~~~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~L 57 (212)
T 3vdp_A 18 STSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57 (212)
T ss_dssp CHHHHHHHHHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344443 77899999999999999876654443444444
No 180
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=67.68 E-value=4.5 Score=39.53 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcC-CCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 012862 232 RSFSYYKAIPVIE-KLPFKI-ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (455)
Q Consensus 232 r~~aY~rAa~~L~-~l~~~i-~s~~~l~~-lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (455)
|+..-.++|..|. .+...+ .+.++|.. |||||..+|+.|.-+. -|.-. + -....+.+++.++.+++
T Consensus 104 KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~----~--~VDt~V~Rv~~Rlg~i~ 172 (287)
T 3n5n_X 104 RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIA-FGQAT----G--VVDGNVARVLCRVRAIG 172 (287)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHH-SCCCC----C--CCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHh-cCCCC----c--cccHHHHHHHHHhCCCC
Confidence 6666666666664 333333 24688988 9999999999997543 34421 1 12344666676666655
No 181
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=67.54 E-value=1.8 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.3
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhh
Q 012862 299 EVWGIGPATAQKLYEK-GHRTLDDLKN 324 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirTledL~~ 324 (455)
+|+|||||||.+|.++ | |||.+.+
T Consensus 255 GVpGIG~KtA~kLl~~~g--sle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG--GIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT--SSTTSCG
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 8899999999999986 5 7777654
No 182
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=67.33 E-value=3.4 Score=45.85 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=33.2
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c--CCCCHHHhhhccCchhhhhhchhhHhhhc
Q 012862 293 TISLFGEVWGIGPATAQKLYE---K--GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~---~--GirTledL~~~~~L~~~q~~Glk~~ed~~ 343 (455)
...+|+.|+||||++|+.+.+ + +|+|.+||.+ ..++|.+.|+.+.
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~------V~giG~k~~ekl~ 555 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK------VSRLGEKTFEQAA 555 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHHG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh------cCCCCHHHHHHhh
Confidence 457788999999999999764 2 7899999975 3455555555543
No 183
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=67.23 E-value=1.5 Score=43.62 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=26.6
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
.+..++|||+.++++|-+.||+|++++...
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~ 65 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVA 65 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTC
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 356789999999999999999999999853
No 184
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=67.21 E-value=1.9 Score=42.98 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=17.3
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+|+|||||||.+|.++- .|++.+.+.
T Consensus 238 Gv~GIG~KtA~kLi~~~-gsle~i~~~ 263 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY-GKIEKAMEY 263 (346)
T ss_dssp CSTTCCHHHHHHHHHHS-SCC------
T ss_pred CCCCcCHHHHHHHHHHc-CCHHHHHHH
Confidence 79999999999999972 477777643
No 185
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=67.15 E-value=5.7 Score=41.41 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=52.4
Q ss_pred hhhhchhhHhhhccCcCHHHHH----HHHHHHHHHhhhcCCCeEEEEeccc-ccCCC-CCCCccEEEeCCCchh-h-h--
Q 012862 331 SQRLGLKYFDDIKTRIPRHEVE----QMERLLQKAGEEVLPEVIILCGGSY-RRGKA-SCGDLDVVIMHPDRKS-H-K-- 400 (455)
Q Consensus 331 ~q~~Glk~~ed~~~~i~r~Ea~----~i~~~v~~~~~~~~p~~~v~~~Gs~-RRgke-~~gDvDiLit~~d~~~-~-~-- 400 (455)
...+|-.-.+...++.+-+++. .+.+-|+.++....|++.|.+.||| +-|.- -.+|||+++..++... . .
T Consensus 17 ~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~ 96 (468)
T 2b4v_A 17 YAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQA 96 (468)
T ss_dssp HHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhhH
Confidence 3455655555555554433322 2344455666667899999999999 66764 6899999998764221 1 1
Q ss_pred hhHHHHHHHHHHc
Q 012862 401 GFLSKYVKKLKEM 413 (455)
Q Consensus 401 ~~l~~lv~~L~~~ 413 (455)
..+.++...|++.
T Consensus 97 ~~~~~l~~~L~~~ 109 (468)
T 2b4v_A 97 KRTDKLRTVIKRY 109 (468)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 1234577778777
No 186
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=67.10 E-value=2.2 Score=38.20 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.4
Q ss_pred chhhhcCCCCCCHHHHHHHHHHH
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIV 274 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil 274 (455)
+.++|.+|||||+.+|+-|.=|.
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHT
T ss_pred ChhhhhcCCCchHHHHHHHHHHH
Confidence 45789999999999999986553
No 187
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=66.66 E-value=1.8 Score=43.89 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=9.0
Q ss_pred hhhccCcCHHHHHHHHH
Q 012862 297 FGEVWGIGPATAQKLYE 313 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~ 313 (455)
|.+|.|||+++|+.+++
T Consensus 349 L~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 349 LKKVEGIGEKRARAISE 365 (377)
T ss_dssp HTTSTTCCHHHHHHHHH
T ss_pred HHhccCccHHHHHHHHH
Confidence 34555555555555543
No 188
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=66.43 E-value=5.1 Score=40.14 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 012862 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (455)
Q Consensus 232 r~~aY~rAa~~L~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (455)
|++.-.++|..|.. +...+ ...++|.+|||||+.+|+.|.-+. -|.-. + -....+.+.+.++.|+.
T Consensus 94 ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~-~~~~~----~--~vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 94 RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA-YGVPE----P--AVDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCCC----C--CCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHH-CCCCc----c--cccHHHHHHHHHHcCcc
Confidence 66666777766653 22223 356889999999999999998664 33321 1 12234666676666664
No 189
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=65.89 E-value=2.8 Score=34.13 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=27.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHh
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf 297 (455)
++.+|+.||+||+.+.+...++ -+.-+++|+.--+..+..-+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga~~ay~rL 43 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHH
Confidence 4678999999999998866544 44556667654444443333
No 190
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=65.47 E-value=3 Score=42.17 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.7
Q ss_pred HHHhhh------ccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 294 ISLFGE------VWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 294 l~lf~~------I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+.+|++ |||||||||.+|.++ +.|++.+...
T Consensus 225 ~~~L~G~D~~d~IpGIG~KtA~kLl~~-~gsle~i~~~ 261 (379)
T 1ul1_X 225 LCILLGSDYCESIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (379)
T ss_dssp HHHHHHCSSSCCCTTCCHHHHHHHHHH-SSSHHHHHTT
T ss_pred HHHHhCCCcCCCCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 445556 999999999999996 2489998754
No 191
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=64.58 E-value=7.6 Score=36.30 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHH
Q 012862 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 232 r~~aY~rAa~~L~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
|+..-..+|..+. .+...+. ..++|..|||||+.+|+.|.-+
T Consensus 89 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 89 KARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHH
Confidence 5666666666664 3433443 4688999999999999998754
No 192
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=63.82 E-value=3.5 Score=34.78 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=35.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH-------cCCCCHHHhh
Q 012862 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE-------KGHRTLDDLK 323 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~-------~GirTledL~ 323 (455)
.+++|.++ |||...++++.+ .|.. -++.+..- .-+-|.+|+|||+.+|.+|.+ .|+.|-.|+.
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~e---AG~~-Tve~va~a----~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~ 93 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEE---AGFH-TVEAVAYA----PKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFH 93 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHT---TCCS-SGGGBTSS----BHHHHHTTTTCSTTHHHHHHHHHHHHSCCC--------
T ss_pred cHHHHHhc-CCCHHHHHHHHH---cCcC-cHHHHHhC----CHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHH
Confidence 45556555 999988887654 4442 33444322 234456999999999999985 2677766665
No 193
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=63.15 E-value=5.2 Score=33.78 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=21.4
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (455)
+.-.|+.|+|||+.+|..+.+. ||.
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid 39 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCC
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcC
Confidence 5556789999999999999987 874
No 194
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=62.91 E-value=3.7 Score=40.74 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.7
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+|||||||||.+|.++ +.|++.+...
T Consensus 241 gv~GiG~ktA~kli~~-~gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRH-SKDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHT-CSSGGGGTGG
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHcC
Confidence 7999999999999996 2588887653
No 195
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=62.85 E-value=3.3 Score=48.11 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHhhhccCcCHHHHHHHH--H-c---CCCCHHHhhhccCchhhhhhchhhHhhhc
Q 012862 293 TISLFGEVWGIGPATAQKLY--E-K---GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly--~-~---GirTledL~~~~~L~~~q~~Glk~~ed~~ 343 (455)
...+|+.|+||||++|+.+. . + .+.|.+||.+- .++|-+.|+...
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v------~~iG~k~fe~~a 762 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH------NILHKTIFMNSA 762 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHT------TCSCHHHHHHHG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhC------CCccHHHHHhcc
Confidence 57788899999999999995 2 2 57999999853 456666555543
No 196
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=62.48 E-value=7.1 Score=35.97 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 012862 218 GKLINIYRALGED-RRSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (455)
Q Consensus 218 ~~la~~~e~~g~~-~r~~aY~rAa~~L~-~l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 274 (455)
++|.++++-.|=- .|+..-..+|..+. .+...+ +..++|.+|||||+.+|+.|--+.
T Consensus 70 ~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 70 EGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 4455444433321 26666667776665 343333 345889999999999999986543
No 197
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=62.30 E-value=11 Score=37.37 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=14.0
Q ss_pred EEEEecccccCCCCCC--CccEEEeCC
Q 012862 370 IILCGGSYRRGKASCG--DLDVVIMHP 394 (455)
Q Consensus 370 ~v~~~Gs~RRgke~~g--DvDiLit~~ 394 (455)
.+...|||.||-..-| |||++|--+
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~ 82 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLT 82 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEE
T ss_pred EEEEecCcCCCcccCCCCceeEEEEEC
Confidence 6778999999988865 999999543
No 198
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=62.28 E-value=7.7 Score=37.39 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=20.7
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHc
Q 012862 290 KVRTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
...+++.|++++||||+||..+--.
T Consensus 202 ~~~~~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 202 VEQAMKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 3457888889999999999987654
No 199
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=61.83 E-value=2.3 Score=33.06 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=34.3
Q ss_pred cCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhhhchhhHhhhcc
Q 012862 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (455)
Q Consensus 301 ~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (455)
-++.++...-|-+.||.|+.||... ..|-++.+||.+..++|.+
T Consensus 14 L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 14 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 3677888888888899999999853 3577888899888666543
No 200
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=61.49 E-value=11 Score=37.47 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+++++++..+ -+..+.+|.+-.+..+.+.| |+++..+||+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAM----GITTVADLAVTDPSVLTTAF------GPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCSHHHHHTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCchhHHHHHHHc----CCCeecccccCCHHHHHHHh------CChHHHHHHHHHcCCCc
Confidence 578999999999987654 34566677766666677777 88888998875 8743
No 201
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=60.96 E-value=3.7 Score=37.95 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHH
Q 012862 252 SADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
..++|.+|||||+.+|+.|--+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 3578999999999999998543
No 202
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=59.39 E-value=11 Score=30.31 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=21.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (455)
+++.+++|+|++..+.|.+.|+.
T Consensus 44 ~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhhccccCcccHHHHHHHHHH
Confidence 68999999999999999999864
No 203
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=59.29 E-value=5 Score=35.36 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (455)
+.--||.|+|||.++|..+.+. ||.
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid 53 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVD 53 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCC
Confidence 4445789999999999999986 874
No 204
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=58.93 E-value=7.5 Score=36.35 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.0
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc
Q 012862 292 RTISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (455)
.+++.|++++||||+||..+--.
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHH
Confidence 35677789999999999988754
No 205
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=58.93 E-value=3.3 Score=45.97 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.7
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhh
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLK 323 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~ 323 (455)
++.++|||||+|+.|-+.||.|+.||.
T Consensus 117 ~~~l~gvg~~~~~~l~~lgi~~~~dll 143 (780)
T 1gm5_A 117 IQYAKGVGPNRKKKLKKLGIETLRDLL 143 (780)
T ss_dssp SSSSSSCCHHHHHHHHTTTCCSSGGGT
T ss_pred chhcCCCCHHHHHHHHHCCCCcHHHHH
Confidence 457899999999999888999999998
No 206
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=58.43 E-value=4.3 Score=38.29 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=69.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH--------HHHHHHc----CCCCHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT--------AQKLYEK----GHRTLDD 321 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt--------A~~ly~~----GirTled 321 (455)
+++..|||||++.|+++.-.|-.-.-..++.|-+.. ..+.+-.....=.|--+ +..--+. =+.+..|
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~La~al-~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~iCVVE~~~D 90 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERLASAL-LEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGD 90 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHHH-HHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEEEEESSHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCCCeEEEECCHHH
Confidence 789999999999999998776544444444443211 01111111111111000 0000000 1133444
Q ss_pred hh---h-----------ccCchhhhhhchh--hHhhhccCc-----------CHHHHHHHHHHHHHHhhhcCCCeEEEEe
Q 012862 322 LK---N-----------EDSLTHSQRLGLK--YFDDIKTRI-----------PRHEVEQMERLLQKAGEEVLPEVIILCG 374 (455)
Q Consensus 322 L~---~-----------~~~L~~~q~~Glk--~~ed~~~~i-----------~r~Ea~~i~~~v~~~~~~~~p~~~v~~~ 374 (455)
+. + .+.|..+.++|.. ..+.+.+|+ |--|-+....+|.+.... -+++|+-
T Consensus 91 v~aiE~t~~y~G~YhVLgG~lSPldGigP~dL~i~~L~~Rl~~V~EVIlAtnpTvEGEaTA~YI~~~Lk~--~~vkVTR- 167 (228)
T 1vdd_A 91 VIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEP--LGAAISR- 167 (228)
T ss_dssp HHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHHHHTT--SSCEEEE-
T ss_pred HHHHHHhcccceEEEecCCccCcccCCChhhcCHHHHHHHhCCCCEEEEeCCCCchHHHHHHHHHHHHHH--cCCCEEE-
Confidence 43 1 1346777777743 344555555 335566677777776532 2667653
Q ss_pred cccccCCCCCCCccEE
Q 012862 375 GSYRRGKASCGDLDVV 390 (455)
Q Consensus 375 Gs~RRgke~~gDvDiL 390 (455)
+-+|-+.+||+|++
T Consensus 168 --iA~GiPvGgeLEY~ 181 (228)
T 1vdd_A 168 --IAYGVPVGGSLEYT 181 (228)
T ss_dssp --CCBCBCTTCCGGGS
T ss_pred --ecccCCCCcceeec
Confidence 45789999999975
No 207
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=58.41 E-value=8.2 Score=39.77 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=38.1
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhh
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~ 323 (455)
|..|||||+..|+.+-| .-|+++.+-. . ....| ..-|||.|.|+++. |++||+...
T Consensus 470 LtAIaGIGp~tAeRLLE--kFGSVe~Vm~---A----teDEL-RedGIGekqarrI~--gl~~l~~~~ 525 (685)
T 4gfj_A 470 LISIRGIDRERAERLLK--KYGGYSKVRE---A----GVEEL-REDGLTDAQIRELK--GLKTLESIV 525 (685)
T ss_dssp HHTSTTCCHHHHHHHHH--HHTSHHHHHH---S----CHHHH-HHTTCCHHHHHHHH--TCHHHHHHS
T ss_pred eeccCCCCHHHHHHHHH--HhcCHHHHHh---C----CHHHH-HHccccHHHHHHHh--hHHHHHHHh
Confidence 67788888888887755 4577666543 1 12223 34899999999884 777776543
No 208
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=57.84 E-value=3.3 Score=33.29 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=33.7
Q ss_pred CcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhhhchhhHhhhc
Q 012862 302 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 302 GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~~ed~~ 343 (455)
++.++...-|-+.||.|+.||... ..|-+++.||-+..++|.
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHH
Confidence 778888888888899999999853 357788889988866554
No 209
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=57.64 E-value=11 Score=38.69 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=38.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+++++++..+ | +..+.+|.+-.+..+.+.| |.+.+.+||+. |+..
T Consensus 236 v~~l~GIG~~t~~~L~~l---G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEAL---G-INSVRDLQTFSPKILEKEL------GISVAQRIQKLSFGEDN 290 (420)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHHSCHHHHHHHH------HHHHHHHHHHHHTTCCC
T ss_pred HHHccCCCHHHHHHHHHh---C-CCcHHHHhhCCHHHHHHHh------CchHHHHHHHHhcCCCc
Confidence 678999999999988764 3 4555666655555556666 67789999984 8854
No 210
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=57.62 E-value=3.3 Score=42.10 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=31.4
Q ss_pred hhhccCcCHHHHHHHHHc---C-CCCHHHhhhcc------CchhhhhhchhhHhhh
Q 012862 297 FGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~---G-irTledL~~~~------~L~~~q~~Glk~~ed~ 342 (455)
+++|||||+++|+++.+- | +..+++|+.+. .|..+.|+|.+....|
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 679999999999999873 4 57788887521 2445556665444433
No 211
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=57.12 E-value=3.1 Score=32.93 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=34.3
Q ss_pred CcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhhhchhhHhhhcc
Q 012862 302 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (455)
Q Consensus 302 GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (455)
++.++...-|-+.||.|+.||... ..|..+.+||-+..++|.+
T Consensus 22 ~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 777888888888899999999853 3577888899888666653
No 212
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=56.77 E-value=11 Score=29.65 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (455)
+++.+++|+|++..+.|.+.|+.
T Consensus 48 ~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 48 EDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHhHHHHHHHHHHH
Confidence 68999999999999999998853
No 213
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=56.61 E-value=3.1 Score=43.98 Aligned_cols=27 Identities=11% Similarity=0.453 Sum_probs=22.6
Q ss_pred hhhccCcCHHHHHHHHHc-CC---CCHHHhh
Q 012862 297 FGEVWGIGPATAQKLYEK-GH---RTLDDLK 323 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~-Gi---rTledL~ 323 (455)
+..+||||++++++|.+. || +|+.+|.
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~ 339 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIR 339 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhh
Confidence 357999999999999999 99 7875554
No 214
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=56.48 E-value=11 Score=37.73 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHcCCChhHHHHHHHHHHHhc-CCcc--------c---cchhhhcCCCCCCHHHHHHHHHH
Q 012862 223 IYRALGEDRRSFSYYKAIPVIEK-LPFK--------I---ESADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 223 ~~e~~g~~~r~~aY~rAa~~L~~-l~~~--------i---~s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
.++..|-.+|+..-..+|..+.. +... + +..++|..|||||..+|+.|.-+
T Consensus 210 ~Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 210 HLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34444555677666777766643 1110 1 23478999999999999998644
No 215
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=56.38 E-value=12 Score=36.31 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHHHHhCC
Q 012862 228 GEDRRSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEIVTTGK 278 (455)
Q Consensus 228 g~~~r~~aY~rAa~~L~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (455)
|-.+|+..-..+|..+..-...+. ..++|..|||||+.+|+.|.-+ .-|.
T Consensus 176 g~g~Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~-~lg~ 234 (290)
T 3i0w_A 176 TAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF-SMQK 234 (290)
T ss_dssp TCGGGHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH-HHCC
T ss_pred CCchHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH-hCCC
Confidence 545687777777877764322211 2367999999999999998744 3344
No 216
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=55.99 E-value=9.3 Score=35.48 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhc-CCc----cc-cchhhhcCCCCCCHHHHHHHHHH
Q 012862 232 RSFSYYKAIPVIEK-LPF----KI-ESADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 232 r~~aY~rAa~~L~~-l~~----~i-~s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
|+..-..+|..+.. +.. ++ ...++|.+|||||+.+|+.|--+
T Consensus 93 KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 93 KAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCY 140 (218)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHH
Confidence 55555666666542 221 11 23578999999999999999755
No 217
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=55.56 E-value=10 Score=35.80 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred cCHHHHHH-HHHHHHHHhhhcCCCe-EEEEecccccCCCC-CCCccEEEeCCC
Q 012862 346 IPRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (455)
Q Consensus 346 i~r~Ea~~-i~~~v~~~~~~~~p~~-~v~~~Gs~RRgke~-~gDvDiLit~~d 395 (455)
|.+.+... +..++..+....-..+ .+.+-|||-||..+ -.||||+|...+
T Consensus 7 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 7 MTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 45566555 3555555543322235 68899999999876 489999986543
No 218
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=55.21 E-value=13 Score=38.25 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=35.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|+|||.+++.++-+-+ | +..+.+|.+-.+..+.+.| |++++.+||+. |+..
T Consensus 255 v~~l~GiG~~~~~~lL~~l--G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEIL--G-IEYMGELTQFTESQLQSHF------GEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHH--T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHc--C-CCcHHHHhhCCHHHHHHHh------CccHHHHHHHHhhCCCC
Confidence 6788999998877642222 2 3344455544455556666 68899999974 8753
No 219
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=53.86 E-value=6.4 Score=38.06 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.8
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
+..++||++.++++|-+.||.|++||...
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~ 33 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATA 33 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTC
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 34788999999999999999999999854
No 220
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=53.64 E-value=12 Score=38.65 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=23.8
Q ss_pred eEEEEecccccCCCCC--CCccEEEeCCCch
Q 012862 369 VIILCGGSYRRGKASC--GDLDVVIMHPDRK 397 (455)
Q Consensus 369 ~~v~~~Gs~RRgke~~--gDvDiLit~~d~~ 397 (455)
+.+.++|||+||--.- +||||.|.-|...
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~ 70 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPEEF 70 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECTTS
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCCCC
Confidence 6889999999998887 4889988776554
No 221
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=53.08 E-value=8.9 Score=34.00 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (455)
+.--||.|+|||+++|..+.+. ||.
T Consensus 26 v~~ALt~I~GIG~~~A~~I~~~~gid 51 (152)
T 3iz6_M 26 IMFALTSIKGVGRRFSNIVCKKADID 51 (152)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCC
T ss_pred eHhhhhhccCcCHHHHHHHHHHcCCC
Confidence 5556789999999999999986 874
No 222
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=52.97 E-value=13 Score=36.89 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=38.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+++++++..+ | +..+.+|.+-.+..+.+.| |+.++.++|+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~---G-i~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNEL---G-IQKLRDILSKNYNELEKIT------GKAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCHHHHHHHTTT---T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred cccccCcCHHHHHHHHHc---C-CccHHHHhcCCHHHHHHHH------CHHHHHHHHHHhCCCCC
Confidence 678899999988876543 3 5566667665666667777 77878888875 8854
No 223
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=52.87 E-value=12 Score=33.45 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=46.3
Q ss_pred CCeEEEEeccc----ccCCCCCCCccEEEeCCCchhhhhhHHHHHHHHHHcCceeeeecccccCCcchhhcccccceeec
Q 012862 367 PEVIILCGGSY----RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEETVGIALQNSMVYEL 442 (455)
Q Consensus 367 p~~~v~~~Gs~----RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 442 (455)
-++...++||| +=.-...+||||+|.. .-..++...|.+.|+-...+. ++.. ....|..|..
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~-------~da~~~~~~L~~~g~~~~~~~-----~~~~--~~~~f~~~~i 97 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTDE-------EGAYEIERIFSEFVSXXVRFS-----STEX--ICSHFGELII 97 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEECH-------HHHHHHHHHTGGGEEEEEEEE-----ECSS--EEEEEEEEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEecc-------cCHHHHHHHHHHHhhcccCCC-----cccc--ccceeeEEee
Confidence 46778889994 5566799999999932 224567888887776554332 1111 3345667777
Q ss_pred ccccccccc
Q 012862 443 PSVHVDSLS 451 (455)
Q Consensus 443 ~~~~~~~~~ 451 (455)
+.+-||-+.
T Consensus 98 ~~v~VDlm~ 106 (169)
T 2fcl_A 98 DGIXVEIMG 106 (169)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEeee
Confidence 777777663
No 224
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=52.53 E-value=10 Score=36.99 Aligned_cols=59 Identities=22% Similarity=0.402 Sum_probs=40.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhH-HHHhh-chhHHHHHhhhcc-C-----cCHHHHHHHHHc
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLE-HFEKD-EKVRTISLFGEVW-G-----IGPATAQKLYEK 314 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le-~l~~~-~~~~~l~lf~~I~-G-----vGpktA~~ly~~ 314 (455)
.+|..||||+...|..|.+ .-++...|- .++.- .+....+||.++. | ||+..++++|+.
T Consensus 237 ~mL~~IpGVs~~~A~~I~~--~ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~ 303 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLE--HYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHH--HCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHH--HCCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHH
Confidence 6799999999999998865 455666553 33221 1222334566663 4 999999999974
No 225
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.45 E-value=9.2 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (455)
+.--||.|+|||+++|..+.+. ||.
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~gid 46 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVAGLD 46 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTCC
T ss_pred ehhhhhhccCcCHHHHHHHHHHhCCC
Confidence 5555789999999999999986 874
No 226
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=51.26 E-value=15 Score=35.26 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHcCC-ChhHHHHHHHHHHHhc--CCccc-cc----hhhhcCCCCCCHHHHHHHHHHHHhCC
Q 012862 225 RALGE-DRRSFSYYKAIPVIEK--LPFKI-ES----ADQVKGLPGIGKSMQDHIQEIVTTGK 278 (455)
Q Consensus 225 e~~g~-~~r~~aY~rAa~~L~~--l~~~i-~s----~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (455)
+-.|- ..|+..-.++|..+.. ++... .+ .++|..|||||+.+|+.|.-+ .-|.
T Consensus 170 r~~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~-~lg~ 230 (282)
T 1mpg_A 170 KALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALR-GWQA 230 (282)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHH-HSCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHH-hCCC
Confidence 33454 3578778888887764 33222 22 478999999999999998654 3444
No 227
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=50.99 E-value=15 Score=35.28 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=33.4
Q ss_pred CHHHHHH-HHHHHHHHhhhcCCCe-EEEEecccccCCCC-CCCccEEEeCCC
Q 012862 347 PRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (455)
Q Consensus 347 ~r~Ea~~-i~~~v~~~~~~~~p~~-~v~~~Gs~RRgke~-~gDvDiLit~~d 395 (455)
.++++.. +.++++.+... .+++ .+.+-|||-||..+ -.||||+|....
T Consensus 18 ~~q~Vq~eL~~ive~L~~~-~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREE-YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHh-cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3445543 56666666543 4565 78899999999865 589999996543
No 228
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=50.32 E-value=10 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=21.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (455)
+.--||.|+|||..+|..+.+. ||.
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid 53 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKID 53 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred EEEeeecccccCHHHHHHHHHHcCCC
Confidence 5556789999999999999986 874
No 229
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=49.75 E-value=9.4 Score=35.82 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcC--Ccc-c------cchhhhcCCCCCCHHHHHHHHHH
Q 012862 232 RSFSYYKAIPVIEKL--PFK-I------ESADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 232 r~~aY~rAa~~L~~l--~~~-i------~s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
|+..-..+|..+..- ... + +..++|..|||||..+|+.|.-+
T Consensus 107 KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 107 KIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 455555556555431 111 2 23467999999999999988644
No 230
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=49.73 E-value=13 Score=34.89 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhc--CC--ccc------cchhhhcCCCCCCHHHHHHHHHH
Q 012862 232 RSFSYYKAIPVIEK--LP--FKI------ESADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 232 r~~aY~rAa~~L~~--l~--~~i------~s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
|+..-+.+|..+.. +| ..+ +..++|..|||||+.+|+.|.-+
T Consensus 118 Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 118 KSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 35555566666654 22 001 23468999999999999988643
No 231
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=48.95 E-value=13 Score=37.01 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=39.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+++++++..+ | +..+.+|.+-.+..+.+.| |++.+.+||+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~---G-I~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNEL---G-IQKLRDILSKNYNELEKIT------GKAKALYLLKLAQDEYN 235 (362)
T ss_dssp STTSTTCCSTTHHHHHHT---T-CCBGGGGTTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred hhhccCCCHHHHHHHHHc---C-CChHHHHhcCCHHHHHHHh------ChHHHHHHHHHhcCCCC
Confidence 678999999999988764 3 4555666665555666777 88899999974 8854
No 232
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=48.40 E-value=9.4 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCCCHHHhh
Q 012862 305 PATAQKLYEKGHRTLDDLK 323 (455)
Q Consensus 305 pktA~~ly~~GirTledL~ 323 (455)
-+.+..|++.||+|++|++
T Consensus 59 ~~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 59 QAILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 5678999999999999985
No 233
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=48.18 E-value=4.3 Score=39.61 Aligned_cols=75 Identities=9% Similarity=0.275 Sum_probs=43.7
Q ss_pred cccchhhhcCCCCCCHHHHHHHHHHHHhCCc--hhhHHHHhhchhHHHHHhhhc--cCcCHHHHHHHHHc----CCCCHH
Q 012862 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKL--SKLEHFEKDEKVRTISLFGEV--WGIGPATAQKLYEK----GHRTLD 320 (455)
Q Consensus 249 ~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~--~~le~l~~~~~~~~l~lf~~I--~GvGpktA~~ly~~----GirTle 320 (455)
++.+.+||..++|+...+-.++.-++.---. ..+ .+-.-.+. -..+|..+ +|+|+..|+++.+. |+.+++
T Consensus 153 ~~~~~~EL~~v~G~~~~~~~~l~p~vtv~p~~~~~i-NiNTa~~~-~a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v~ 230 (298)
T 3ci0_K 153 PLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQI-NINTLDVT-QSVILEALFDPWLSPVQARALLQQRPAKGWEDVD 230 (298)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHTTTEECCSCSSCCE-ETTTCCGG-GTHHHHHHTC-------CCHHHHTCCTTCCSCHH
T ss_pred CCCCHHHHHhccCCCHHHHHhhcCeEEEecCCCcce-eccccChh-hHHHHHHhcCCCCCHHHHHHHHHhcccCCCCCHH
Confidence 5788899999999999999988877753210 111 11110000 12233345 89999999999972 899999
Q ss_pred Hhhhc
Q 012862 321 DLKNE 325 (455)
Q Consensus 321 dL~~~ 325 (455)
|+.+.
T Consensus 231 ~~~~~ 235 (298)
T 3ci0_K 231 QFLAQ 235 (298)
T ss_dssp HHHTS
T ss_pred HHHhh
Confidence 99853
No 234
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=47.74 E-value=7.1 Score=33.55 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.2
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (455)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~ 40 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGIN 40 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCC
T ss_pred eeeehhccccccHHHHHHHHHHcCCC
Confidence 4555689999999999999987 884
No 235
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=47.58 E-value=24 Score=34.17 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=46.9
Q ss_pred HHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CC-CCHHHhhhcc---CchhhhhhchhhHhhhc
Q 012862 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH-RTLDDLKNED---SLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 269 kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-Gi-rTledL~~~~---~L~~~q~~Glk~~ed~~ 343 (455)
.|+-..+.|++++ |..++....+ +..+|+-.|||.|||.+|... |- .-+.+|.+.- +|+...+.|-+-...+.
T Consensus 387 eiermyeegrlse-eayraaveiq-laeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslv 464 (519)
T 2csb_A 387 EIERMYEEGRLSE-EAYRAAVEIQ-LAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLV 464 (519)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHH-HHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHHS
T ss_pred HHHHHHHcccccH-HHHHHHHHHH-HHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHHHHHHhc
Confidence 3444556677665 3344444333 344569999999999999986 53 3333333332 34555566644433332
Q ss_pred ---------cCcCHHHHHH
Q 012862 344 ---------TRIPRHEVEQ 353 (455)
Q Consensus 344 ---------~~i~r~Ea~~ 353 (455)
..|.|+.|+.
T Consensus 465 pgyaslisirgidreraer 483 (519)
T 2csb_A 465 PGYASLISIRGIDRERAER 483 (519)
T ss_dssp TTHHHHHTSTTCCHHHHHH
T ss_pred cchhhheeeccccHHHHHH
Confidence 3456666554
No 236
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=47.55 E-value=7.9 Score=34.48 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=26.1
Q ss_pred CCCCC--HHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012862 259 LPGIG--KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (455)
Q Consensus 259 lpgIG--~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (455)
|.|+| ..=|+.|.++.+ |.+ +...+.+.++||||+.||..+-
T Consensus 78 i~~lG~y~~KAk~i~~~a~-~~v-----------p~~~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 78 LKPLGLYDLRAKTIVKFSD-EYL-----------TKQWKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp HGGGSCHHHHHHHHHHHHH-HHH-----------HSCCSSGGGSTTCCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHhC-CcC-----------CCChhhhhcCCCchHHHHHHHH
Confidence 45666 345666666543 111 1123446699999999999854
No 237
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=47.32 E-value=16 Score=37.38 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=38.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhh-chhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~-~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+++++++.+-+ .-+..+.+|.+- .+..+.+.| |++...++|+. |+..
T Consensus 243 v~~l~GiG~~~~~~L~~~~--~GI~ti~dL~~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 300 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTF--DSPHSLNDLRKRYTLDALKASV------GSKLGMKIHLALQGQDD 300 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHT--TCCCSHHHHHHHCCHHHHHHHH------CSSHHHHHHHHTTTCCC
T ss_pred cccccCcCHHHHHHHHHhc--CCceEHHHHHhcCCHHHHHHHh------CHHHHHHHHHHhcCCCc
Confidence 6789999999998887721 124455566655 555566666 67778888875 9865
No 238
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=45.61 E-value=27 Score=35.43 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=30.7
Q ss_pred HHHHHhhhcCCCeEEEEecccccCCCC-CCCccEEEeCCCc
Q 012862 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDR 396 (455)
Q Consensus 357 ~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~d~ 396 (455)
-|+++.....|++.|.+-||++-|.-+ .+|||+.|..++.
T Consensus 34 ~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~ 74 (384)
T 3hj4_A 34 RVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNF 74 (384)
T ss_dssp HHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTC
T ss_pred HHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCC
Confidence 334444456899999999999998765 6799999987653
No 239
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=45.33 E-value=23 Score=35.34 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 012862 293 TISLFGEVWGIGPATAQKLYEK 314 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (455)
+++.|++++|||++||..+--.
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 5666779999999999987654
No 240
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=44.74 E-value=21 Score=33.28 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 012862 232 RSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 232 r~~aY~rAa~~L~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Ei 273 (455)
|+..-..+|..+..=...+. ..++|..|||||..+|+.|--+
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555666666654111111 1367999999999999988643
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=44.69 E-value=33 Score=32.86 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=42.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH-------cCCCCHHHhh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE-------KGHRTLDDLK 323 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~-------~GirTledL~ 323 (455)
.++..||||++.++.+..+- | +.-++++....+ +.|..+.|+..++|.+|.+ .|+.|-.++.
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~---g-i~t~~~~~~~~~----~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~ 71 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEA---G-YIDFMKIATATV----GELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL 71 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHH---T-CCSHHHHHTCCH----HHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHc---C-CCcHHHHHhCCH----HHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH
Confidence 46888999999999987763 4 455666654333 2345888999999888875 2666666664
No 242
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=43.89 E-value=20 Score=29.37 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (455)
+++.+++|+|++....|.+.|+.
T Consensus 56 ~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 56 VELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999964
No 243
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=42.92 E-value=5.6 Score=42.41 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=9.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhcc-CchhhhhhchhhHhhhccCc
Q 012862 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRI 346 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~-~L~~~q~~Glk~~ed~~~~i 346 (455)
+|..| +=+||+++.|.++|+. |-.+++-|+++. +|....++|++..+.|..++
T Consensus 10 ~~~~l-~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia~~~ 64 (574)
T 3e1s_A 10 LLAGL-QGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQAR 64 (574)
T ss_dssp -----------------------------------CGGGTSSSCCHHHHHTTC---
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHHHHc
Confidence 34333 5666666666666665 666666665442 45445566666666655443
No 244
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=40.92 E-value=23 Score=33.10 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhc--CCc--cccc------hhhhcCCCCCCHHHHHHHHHH
Q 012862 232 RSFSYYKAIPVIEK--LPF--KIES------ADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 232 r~~aY~rAa~~L~~--l~~--~i~s------~~~l~~lpgIG~~ia~kI~Ei 273 (455)
|+..-..+|..+.. +|. .+.. .++|..|||||..+|+.|.-+
T Consensus 107 Ka~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 107 KIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 45555666666653 221 1111 368999999999999988643
No 245
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=40.75 E-value=32 Score=35.31 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=35.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+.+++++..+ | +..+.+|.+. +..+.+.| |++++..||+. |+..
T Consensus 284 v~~l~GiG~~~~~~L~~l---G-I~T~gdL~~~-~~~L~~~f------G~~~~~~l~~~a~G~d~ 337 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 337 (459)
T ss_dssp GGGCTTSCHHHHHHHHHT---T-CCBHHHHHHT-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred HHhcCCcCHHHHHHHHHc---C-CCcHHHHHhh-HHHHHHHh------ChHhHHHHHHHHcCCCC
Confidence 678999999988877543 3 3445556543 34445555 78888989874 8854
No 246
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=37.38 E-value=19 Score=33.48 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 012862 253 ADQVK-GLPGIGKSMQDHIQEI 273 (455)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (455)
.++|. +|||||.++|+.|--+
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999998544
No 247
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=36.82 E-value=1.8e+02 Score=30.99 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=37.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
-.|.+|||||...|.++. +.| +..+++|. ..+....+++ |++.++++++
T Consensus 657 ~~L~qlp~i~~~rar~L~---~~g-~~s~~~l~-~~~~~l~~~l------~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY---NNG-IKELGDVV-MNPDKVKNLL------GQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH---HTT-CCSHHHHH-HCHHHHHHHH------CHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH---HcC-CCCHHHHh-CCHHHHHHHh------ChhHHHHHHH
Confidence 468899999999999874 555 47778887 6777777777 3666666665
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=35.79 E-value=7.7 Score=37.77 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhhhchhhHhhhc
Q 012862 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~~ed~~ 343 (455)
+..++||++.++++|-+.|+.|++++.... .|....++.....+++.
T Consensus 14 ~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~ 62 (324)
T 2z43_A 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKII 62 (324)
T ss_dssp -------------------------------------------------
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHH
Confidence 346779999999999999999999998543 45555555544444443
No 249
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=35.44 E-value=2.7e+02 Score=26.76 Aligned_cols=52 Identities=4% Similarity=0.141 Sum_probs=33.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
..|.+|||||..+++++. +.| +..+++|..-.+.+.-+++ |+++..++++++
T Consensus 157 ~pL~Qlp~i~~~~~~~l~---~~~-i~s~~~l~~~~~~e~~~ll----~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK---EIN-VETVYDIMALEDEERDEIL----TLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH---HTT-CCSHHHHHHSCHHHHHHHC----CCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH---hCC-CCCHHHHhcCCHHHHHhHh----CCCHHHHHHHHH
Confidence 358999999999988865 333 4456666554444444443 677776666654
No 250
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=35.16 E-value=15 Score=38.75 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=35.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHh------CCchh-----hHHHHhhchhHHHHHhhhccCcC----------HHHHHHHHHc
Q 012862 256 VKGLPGIGKSMQDHIQEIVTT------GKLSK-----LEHFEKDEKVRTISLFGEVWGIG----------PATAQKLYEK 314 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~t------G~~~~-----le~l~~~~~~~~l~lf~~I~GvG----------pktA~~ly~~ 314 (455)
+..|+|||+++++++..++-- |.+.. +.+|++-.+ ..|.+.+|-+ .+++.+||+.
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~~~----~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~ 384 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLD----AKVKQSDYDRSTSNIDPLKTADLAEKLFKL 384 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHHHH----HHHHSTTCC---CCCCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhcCH----HHHHHhcCccccccccchhhhHHHHHHHHH
Confidence 567899999999999987421 22222 133433222 2344455531 2788999875
Q ss_pred --CCCC
Q 012862 315 --GHRT 318 (455)
Q Consensus 315 --GirT 318 (455)
|+..
T Consensus 385 arGid~ 390 (520)
T 3mfi_A 385 SRGRYG 390 (520)
T ss_dssp TTTCCC
T ss_pred hCCCCC
Confidence 8854
No 251
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=34.41 E-value=14 Score=34.51 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.6
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 012862 253 ADQVK-GLPGIGKSMQDHIQEI 273 (455)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (455)
.++|. +|||||.++|+.|--+
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 36798 9999999999988543
No 252
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=32.97 E-value=93 Score=24.96 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=35.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH-----HhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF-----EKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l-----~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
.++..|||||+..+.+..| .|--.-+.-| .........+-|..+-|+-.|-|..-|+
T Consensus 18 K~V~evpGIG~~~~~~L~~---~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~ 79 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE---RGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFG 79 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH---TTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH---cCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4699999999999998877 5543332211 1112223344455566777777776664
No 253
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=32.64 E-value=1.3e+02 Score=28.91 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCccccc--hhhhcCCCCCCHHHHHHHHHHHHh------------CCchhhHHHHhhchhHHH-HHhhhc
Q 012862 236 YYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTT------------GKLSKLEHFEKDEKVRTI-SLFGEV 300 (455)
Q Consensus 236 Y~rAa~~L~~l~~~i~s--~~~l~~lpgIG~~ia~kI~Eil~t------------G~~~~le~l~~~~~~~~l-~lf~~I 300 (455)
..+||.+|..||..+.. +..+..+.+|-+.+.+.|.++|+. |-...+-++.+......- .+|.++
T Consensus 87 ~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L 166 (279)
T 3pkr_A 87 APNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARI 166 (279)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHH
Confidence 36899999999987665 356788888999999999998874 223445566665555543 466677
Q ss_pred cCcCHHHHHHHHHcCCCCHHHhh
Q 012862 301 WGIGPATAQKLYEKGHRTLDDLK 323 (455)
Q Consensus 301 ~GvGpktA~~ly~~GirTledL~ 323 (455)
--.-|..|.++ ++-.-++|||.
T Consensus 167 ~~~dpelAe~I-r~~MF~FeDl~ 188 (279)
T 3pkr_A 167 ESVDNKLAGAI-KEMMFTFEDIV 188 (279)
T ss_dssp HTTCHHHHHHH-HTTSCCGGGGG
T ss_pred HhhCHHHHHHH-HHhccCHHHHh
Confidence 77788888887 44667788876
No 254
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=32.32 E-value=69 Score=33.22 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHhhhcCCCeEEEEecccccCCCC-CCCccEEEeCCC
Q 012862 355 ERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (455)
Q Consensus 355 ~~~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~d 395 (455)
-..|+++.....|+++|.+-||+.=|--. .+|||++|..++
T Consensus 159 v~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~ 200 (464)
T 3pq1_A 159 CSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 200 (464)
T ss_dssp HHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCC
Confidence 34455555667899999999999987654 679999986543
No 255
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=32.06 E-value=9.2 Score=40.71 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CCCC
Q 012862 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318 (455)
Q Consensus 261 gIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-GirT 318 (455)
||+.++|.+|...+....+ +.++ +.||.. ..|+|||.++|..+-.. |+..
T Consensus 18 g~~~~~a~~i~~~yg~~~~---~~i~-~nPy~l----~~i~gigf~~aD~ia~~~g~~~ 68 (574)
T 3e1s_A 18 GLTINQAQRAVKHFGADAL---DRLE-KDLFTL----TEVEGIGFLTADKLWQARGGAL 68 (574)
T ss_dssp ------------------------------CGG----GTSSSCCHHHHHTTC-------
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHH-hCCccc----CCcCCCCHHHHHHHHHHcCCCC
Confidence 8999999999887755443 3444 357755 48999999999999987 8853
No 256
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=30.94 E-value=21 Score=27.83 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCCCHHHhh
Q 012862 305 PATAQKLYEKGHRTLDDLK 323 (455)
Q Consensus 305 pktA~~ly~~GirTledL~ 323 (455)
-+..+.|+++|++|++|++
T Consensus 64 ~~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 64 NAILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 4668899999999999985
No 257
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=30.80 E-value=7.5 Score=37.91 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=36.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhh-chhHHHHHhhhc-cC-----cCHHHHHHHHHc
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKD-EKVRTISLFGEV-WG-----IGPATAQKLYEK 314 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~-~~~~~l~lf~~I-~G-----vGpktA~~ly~~ 314 (455)
.+|..|||||...|..|.+. -.+...| +.++.. .+.....+|.++ .| |||..++++|+-
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~--ypTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~ 299 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDR--YSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSS--SCSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH--cCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHH
Confidence 68999999999998887662 3344333 223320 112222344455 23 999999999985
No 258
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=29.56 E-value=7.9 Score=31.80 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=33.5
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhhhchhhHhhhc
Q 012862 299 EVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (455)
Q Consensus 299 ~I~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~~ed~~ 343 (455)
.--++.++...-|-+.||.|+.||... ..|-++..||-+..+.|.
T Consensus 27 e~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 27 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp GGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHH
Confidence 334677888888888899999999853 347778888988755543
No 259
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.56 E-value=5.7 Score=34.95 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHhhhccCcCHHHHHHHHHc-CC
Q 012862 295 SLFGEVWGIGPATAQKLYEK-GH 316 (455)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~-Gi 316 (455)
--|+.|+|||+.+|.++.+. ||
T Consensus 62 ~aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 62 YSLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp TGGGGSTTCCSSTTTGGGTTTTC
T ss_pred EeeeeecCccHHHHHHHHHHcCC
Confidence 34689999999999999987 99
No 260
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=27.27 E-value=22 Score=34.43 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 012862 253 ADQVKGLPGIGKSMQDHIQEI 273 (455)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Ei 273 (455)
.++|..|||||..+|+.|.-+
T Consensus 209 ~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 209 YEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 467999999999999988654
No 261
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=26.74 E-value=37 Score=27.01 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=16.7
Q ss_pred HHHHhhhccCcCHHHHHHHHH
Q 012862 293 TISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~ 313 (455)
.-.....++|||++++++|-+
T Consensus 56 s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHH
Confidence 344456999999999999865
No 262
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=26.36 E-value=2e+02 Score=27.73 Aligned_cols=65 Identities=15% Similarity=0.371 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHH
Q 012862 233 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311 (455)
Q Consensus 233 ~~aY~rAa~~L~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 311 (455)
--||+.|... .+.++.+-.|+|.++|+.+- -.-|.-..+..|..+ + -++-+.+|.|||.+..+.|
T Consensus 399 eeayraavei---------qlaeltkkegvgrktaerll--rafgnpervkqlare--f-eieklasvegvgervlrsl 463 (519)
T 2csb_A 399 EEAYRAAVEI---------QLAELTKKEGVGRKTAERLL--RAFGNPERVKQLARE--F-EIEKLASVEGVGERVLRSL 463 (519)
T ss_dssp HHHHHHHHHH---------HHHHHHTSTTCCHHHHHHHH--HHHSSHHHHHHHHHT--T-CHHHHHTSTTCSHHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHhhhcccchhHHHHHH--HHhCCHHHHHHHHHH--H-hHHHHhhccchHHHHHHHh
Confidence 4478766543 14578888899999998763 345666666555432 1 2333346666666665555
No 263
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=25.45 E-value=78 Score=33.11 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=32.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012862 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (455)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 318 (455)
+..|||||+.++++...+ | +..+.+|.+. +..+...| |+..+..||+. |+..
T Consensus 340 V~kl~GIG~~t~~~L~~l---G-I~TigDL~~~-~~~L~~~f------G~~~~~~l~~~a~Gid~ 393 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 393 (517)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCBHHHHHHH-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred hhhhccccHHHHHHHHHh---C-CCcHHHHHhh-HHHHHHHh------ChHHHHHHHHHHcCCCc
Confidence 678999999998887654 3 3444555543 32233334 67777888763 8754
No 264
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=24.56 E-value=53 Score=25.87 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=38.3
Q ss_pred ccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhhhchhhHhhhccCcCHHHHHHHHHHHHHH
Q 012862 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (455)
Q Consensus 300 I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~~v~~~ 361 (455)
+||+-+..++.|-+.||+|.+|+.....+.-++..|+. ..++.++...+...
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls----------~~~v~~l~r~l~~~ 60 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS----------YKALVALRRVLLAQ 60 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC----------HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC----------HHHHHHHHHHHHHH
Confidence 48999999999999999999999976654445555554 46666765555543
No 265
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=24.26 E-value=43 Score=32.35 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=28.1
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 012862 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (455)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~ 325 (455)
.-.+++|++||||++++|..+.+ -+-|+.+|.++
T Consensus 233 e~~~~mL~~IpGVs~~~A~~I~~-~ypTp~~L~~A 266 (311)
T 2ziu_A 233 EVFARQLMQISGVSGDKAAAVLE-HYSTVSSLLQA 266 (311)
T ss_dssp HHHHHHHTTBTTCCHHHHHHHHH-HCSSHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHH-HCCCHHHHHHH
Confidence 34778889999999999999987 56788888753
No 266
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=23.31 E-value=98 Score=32.29 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=21.7
Q ss_pred CeEEEEecccccCCC-CCCCccEEEeCCC
Q 012862 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPD 395 (455)
Q Consensus 368 ~~~v~~~Gs~RRgke-~~gDvDiLit~~d 395 (455)
++-|..+|+|-|+.- .+.|||+++.+++
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~ 262 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDC 262 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECC
T ss_pred CEEEEeeccccccccCcccccceeeeecC
Confidence 457788999977654 4999999997754
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=20.08 E-value=45 Score=33.70 Aligned_cols=53 Identities=26% Similarity=0.242 Sum_probs=24.7
Q ss_pred hhccCcCHHHHHHHHH-------cCCCCHHHhhhccCchhhhhhchhhHhhhc-cCcCHHH
Q 012862 298 GEVWGIGPATAQKLYE-------KGHRTLDDLKNEDSLTHSQRLGLKYFDDIK-TRIPRHE 350 (455)
Q Consensus 298 ~~I~GvGpktA~~ly~-------~GirTledL~~~~~L~~~q~~Glk~~ed~~-~~i~r~E 350 (455)
.++.|+...+|.++.+ .|+.|..++.+...-...-..|+.-.+.++ ..|++.+
T Consensus 119 ~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~~~~~~~~i~TG~~~LD~lLgGGI~~Ge 179 (400)
T 3lda_A 119 LEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGS 179 (400)
T ss_dssp HTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHHHHHHTSCEECCSCHHHHHHTTTSEETTS
T ss_pred HHHhCCCHHHHHHHHHHHHHhccccCCCHHHHHhhhccCCccccCChhHHHHhcCCcCCCc
Confidence 3566666655555432 255555555542111111123566666655 4554433
No 268
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=20.06 E-value=5.1e+02 Score=27.47 Aligned_cols=52 Identities=17% Similarity=0.388 Sum_probs=37.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012862 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (455)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (455)
-.|.+|||||...|+++. +.| +.-+++|.+-.+.... .++|+|.+.++.+..
T Consensus 646 ~~L~qlp~v~~~rar~L~---~~G-~~s~~dl~~~~~~~l~----~~~~~~~~i~~~~~~ 697 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALY---NSG-FRSIEDISQARPEELL----KIEGIGVKTVEAIFK 697 (720)
T ss_dssp GGGTTSTTCCHHHHHHHH---TTT-CCSHHHHHTCCHHHHH----TSTTCCHHHHHHHHH
T ss_pred hhhhhCCCCCHHHHHHHH---HcC-CCCHHHHHhCCHHHHH----HhHhHHHHHHHHHHH
Confidence 468899999999998875 444 5566677654444333 348999999888765
Done!