Query 012864
Match_columns 455
No_of_seqs 201 out of 1536
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02226 2-oxoglutarate dehydr 100.0 3.5E-90 7.5E-95 718.8 40.2 436 1-455 1-463 (463)
2 PRK05704 dihydrolipoamide succ 100.0 2.2E-84 4.8E-89 673.3 41.3 367 89-455 1-407 (407)
3 PTZ00144 dihydrolipoamide succ 100.0 2.4E-84 5.2E-89 670.6 39.4 355 88-455 42-418 (418)
4 TIGR01347 sucB 2-oxoglutarate 100.0 6.9E-84 1.5E-88 668.4 41.5 365 91-455 1-403 (403)
5 PLN02744 dihydrolipoyllysine-r 100.0 9.5E-83 2.1E-87 675.1 38.7 376 78-453 98-539 (539)
6 KOG0559 Dihydrolipoamide succi 100.0 2.8E-84 6.1E-89 636.6 24.8 363 89-455 71-457 (457)
7 TIGR02927 SucB_Actino 2-oxoglu 100.0 8.4E-80 1.8E-84 665.4 38.7 363 88-450 133-584 (590)
8 PLN02528 2-oxoisovalerate dehy 100.0 1.1E-79 2.3E-84 640.3 37.6 361 93-455 1-415 (416)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 7.9E-80 1.7E-84 638.7 34.8 365 89-454 1-404 (404)
10 KOG0558 Dihydrolipoamide trans 100.0 3.6E-81 7.8E-86 611.9 20.5 407 37-455 17-473 (474)
11 TIGR01349 PDHac_trf_mito pyruv 100.0 6.7E-79 1.5E-83 637.4 37.2 360 92-453 1-435 (435)
12 TIGR01348 PDHac_trf_long pyruv 100.0 1.6E-78 3.5E-83 650.7 37.0 362 90-453 116-546 (546)
13 PRK11854 aceF pyruvate dehydro 100.0 3.3E-74 7.1E-79 627.5 39.8 364 88-453 204-633 (633)
14 PRK11856 branched-chain alpha- 100.0 4.1E-71 8.9E-76 577.0 39.6 361 89-454 1-411 (411)
15 PRK11855 dihydrolipoamide acet 100.0 2.6E-71 5.7E-76 596.6 38.9 364 88-453 117-547 (547)
16 KOG0557 Dihydrolipoamide acety 100.0 3.8E-72 8.1E-77 570.1 25.9 364 87-453 35-470 (470)
17 PRK14843 dihydrolipoamide acet 100.0 1.7E-66 3.6E-71 529.0 29.4 228 226-453 118-347 (347)
18 PF00198 2-oxoacid_dh: 2-oxoac 100.0 5.2E-66 1.1E-70 499.6 27.4 228 225-453 3-231 (231)
19 PRK11857 dihydrolipoamide acet 100.0 8.7E-66 1.9E-70 515.6 29.2 228 226-453 76-305 (306)
20 PRK12270 kgd alpha-ketoglutara 100.0 1.7E-53 3.6E-58 461.8 29.4 221 225-446 114-349 (1228)
21 PRK13757 chloramphenicol acety 99.8 6.3E-18 1.4E-22 162.4 20.4 199 229-447 11-214 (219)
22 PF00302 CAT: Chloramphenicol 99.8 1E-17 2.2E-22 159.8 20.8 177 248-442 24-206 (206)
23 PRK11892 pyruvate dehydrogenas 99.5 1.6E-13 3.5E-18 145.4 16.9 66 90-155 2-83 (464)
24 PF00364 Biotin_lipoyl: Biotin 99.5 3.8E-14 8.3E-19 113.8 6.0 59 91-149 1-74 (74)
25 COG4845 Chloramphenicol O-acet 99.5 1.6E-12 3.4E-17 121.3 17.1 186 248-451 27-217 (219)
26 PRK14875 acetoin dehydrogenase 99.4 2.9E-13 6.2E-18 137.6 8.9 64 90-153 2-80 (371)
27 PRK06748 hypothetical protein; 99.3 2.4E-12 5.2E-17 105.4 7.0 48 104-151 12-75 (83)
28 TIGR02927 SucB_Actino 2-oxoglu 99.2 4.2E-11 9.1E-16 130.8 8.4 65 89-153 1-80 (590)
29 PRK11854 aceF pyruvate dehydro 99.1 8.4E-11 1.8E-15 129.6 8.3 62 89-152 1-77 (633)
30 PRK05889 putative acetyl-CoA c 99.0 4.1E-10 8.9E-15 89.6 6.6 47 104-150 10-71 (71)
31 PRK11855 dihydrolipoamide acet 99.0 1.4E-09 3E-14 118.2 9.1 65 89-154 1-80 (547)
32 cd06663 Biotinyl_lipoyl_domain 98.9 2.6E-09 5.6E-14 84.9 6.8 57 93-149 2-73 (73)
33 PRK08225 acetyl-CoA carboxylas 98.9 2.9E-09 6.2E-14 84.3 6.6 47 104-150 9-70 (70)
34 TIGR01348 PDHac_trf_long pyruv 98.9 4.6E-09 1E-13 114.0 7.9 61 92-153 2-77 (546)
35 PRK06549 acetyl-CoA carboxylas 98.6 1.1E-07 2.3E-12 84.6 6.6 47 103-149 68-129 (130)
36 PRK05641 putative acetyl-CoA c 98.5 1.5E-07 3.2E-12 86.0 6.5 46 104-149 92-152 (153)
37 cd06849 lipoyl_domain Lipoyl d 98.5 4.6E-07 9.9E-12 69.5 7.7 58 92-149 2-74 (74)
38 PRK07051 hypothetical protein; 98.5 2.8E-07 6.1E-12 75.1 6.1 55 90-150 3-79 (80)
39 PLN02983 biotin carboxyl carri 98.5 2E-07 4.3E-12 91.1 6.1 46 105-150 206-273 (274)
40 COG0511 AccB Biotin carboxyl c 98.5 2.8E-07 6E-12 83.1 6.0 47 104-150 78-139 (140)
41 cd06850 biotinyl_domain The bi 98.4 5.4E-07 1.2E-11 69.4 6.1 47 103-149 6-67 (67)
42 PRK14042 pyruvate carboxylase 98.3 6.9E-07 1.5E-11 97.6 6.9 48 104-151 533-595 (596)
43 TIGR00531 BCCP acetyl-CoA carb 98.3 8.6E-07 1.9E-11 81.3 5.9 41 110-150 101-156 (156)
44 PRK06302 acetyl-CoA carboxylas 98.3 1.5E-06 3.3E-11 79.6 5.9 41 110-150 100-155 (155)
45 TIGR02712 urea_carbox urea car 98.2 2.4E-06 5.3E-11 100.4 6.5 47 104-150 1140-1201(1201)
46 TIGR01108 oadA oxaloacetate de 98.0 5.3E-06 1.2E-10 90.8 5.0 43 104-146 525-582 (582)
47 TIGR01235 pyruv_carbox pyruvat 98.0 9.6E-06 2.1E-10 94.8 6.2 47 104-150 1082-1143(1143)
48 PRK14040 oxaloacetate decarbox 97.9 1.4E-05 3E-10 87.7 6.6 46 104-149 532-592 (593)
49 PRK09282 pyruvate carboxylase 97.7 5.9E-05 1.3E-09 82.9 6.5 47 104-150 530-591 (592)
50 PRK12999 pyruvate carboxylase; 97.5 0.00015 3.3E-09 85.1 6.5 46 105-150 1085-1145(1146)
51 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00018 3.8E-09 53.4 3.3 29 103-131 9-37 (50)
52 COG4770 Acetyl/propionyl-CoA c 96.9 0.0013 2.8E-08 70.5 5.4 47 104-150 583-644 (645)
53 PRK08225 acetyl-CoA carboxylas 95.8 0.0092 2E-07 47.0 3.4 26 103-128 45-70 (70)
54 PRK10559 p-hydroxybenzoic acid 95.7 0.02 4.2E-07 58.2 6.2 29 103-131 54-82 (310)
55 COG1038 PycA Pyruvate carboxyl 95.6 0.011 2.4E-07 65.8 4.1 46 105-150 1088-1148(1149)
56 cd06848 GCS_H Glycine cleavage 95.3 0.014 3.1E-07 49.0 3.1 41 90-131 15-56 (96)
57 PRK06748 hypothetical protein; 95.2 0.024 5.1E-07 46.7 4.0 29 103-131 49-77 (83)
58 TIGR01730 RND_mfp RND family e 95.2 0.037 8E-07 55.3 6.1 28 103-130 33-60 (322)
59 KOG0368 Acetyl-CoA carboxylase 95.0 0.023 5.1E-07 66.6 4.4 52 103-154 692-757 (2196)
60 KOG0238 3-Methylcrotonyl-CoA c 94.5 0.036 7.7E-07 59.1 4.0 46 105-150 610-670 (670)
61 PRK09783 copper/silver efflux 94.1 0.11 2.4E-06 54.8 6.7 27 103-129 130-157 (409)
62 PF07247 AATase: Alcohol acety 93.9 1.5 3.2E-05 46.8 15.1 176 253-445 251-480 (480)
63 PRK07051 hypothetical protein; 93.8 0.07 1.5E-06 43.3 3.6 26 103-128 54-79 (80)
64 KOG0369 Pyruvate carboxylase [ 93.7 0.075 1.6E-06 58.4 4.5 47 104-150 1114-1175(1176)
65 PRK09578 periplasmic multidrug 93.6 0.12 2.6E-06 53.9 5.9 34 96-130 64-97 (385)
66 PRK15030 multidrug efflux syst 93.1 0.17 3.7E-06 53.1 6.0 28 103-130 72-99 (397)
67 TIGR02971 heterocyst_DevB ABC 92.8 0.085 1.8E-06 53.5 3.2 27 105-131 25-51 (327)
68 PRK00624 glycine cleavage syst 92.6 0.059 1.3E-06 47.0 1.5 26 105-131 34-59 (114)
69 PRK09859 multidrug efflux syst 92.6 0.21 4.6E-06 52.1 5.9 28 103-130 68-95 (385)
70 PF12700 HlyD_2: HlyD family s 92.6 0.094 2E-06 52.5 3.1 28 103-131 28-55 (328)
71 PRK12784 hypothetical protein; 92.4 0.38 8.2E-06 38.9 5.7 50 103-152 12-77 (84)
72 TIGR00998 8a0101 efflux pump m 92.0 0.13 2.9E-06 52.1 3.4 29 103-131 49-77 (334)
73 PF00364 Biotin_lipoyl: Biotin 91.9 0.16 3.4E-06 40.5 3.0 25 103-127 50-74 (74)
74 TIGR03077 not_gcvH glycine cle 91.9 0.15 3.3E-06 44.2 3.1 26 105-131 32-57 (110)
75 PRK05889 putative acetyl-CoA c 91.9 0.19 4E-06 39.7 3.4 26 103-128 46-71 (71)
76 PF07831 PYNP_C: Pyrimidine nu 91.7 0.16 3.5E-06 40.9 3.0 24 108-131 34-57 (75)
77 KOG0559 Dihydrolipoamide succi 91.5 0.55 1.2E-05 48.4 7.0 37 90-130 113-149 (457)
78 COG0511 AccB Biotin carboxyl c 91.4 0.17 3.8E-06 45.6 3.1 27 103-129 114-140 (140)
79 PRK11556 multidrug efflux syst 91.2 0.35 7.7E-06 51.1 5.8 28 103-130 94-121 (415)
80 PRK13380 glycine cleavage syst 90.6 0.18 4E-06 45.7 2.5 40 91-131 31-71 (144)
81 PF00529 HlyD: HlyD family sec 90.6 0.17 3.8E-06 50.1 2.6 28 103-130 8-35 (305)
82 PRK06549 acetyl-CoA carboxylas 90.3 0.46 9.9E-06 42.5 4.7 25 103-127 105-129 (130)
83 PRK03598 putative efflux pump 89.6 0.26 5.5E-06 50.2 2.9 34 97-131 45-78 (331)
84 PRK15136 multidrug efflux syst 89.2 0.31 6.7E-06 51.1 3.3 29 103-131 68-96 (390)
85 TIGR00531 BCCP acetyl-CoA carb 89.1 0.35 7.6E-06 44.5 3.1 27 102-128 130-156 (156)
86 TIGR01843 type_I_hlyD type I s 88.9 0.34 7.3E-06 50.4 3.3 29 103-131 50-78 (423)
87 PF02749 QRPTase_N: Quinolinat 88.9 0.37 8E-06 39.8 2.8 23 108-130 47-69 (88)
88 PRK06302 acetyl-CoA carboxylas 88.7 0.4 8.7E-06 44.0 3.3 26 103-128 130-155 (155)
89 PRK10476 multidrug resistance 88.7 0.37 8E-06 49.4 3.3 29 103-131 55-83 (346)
90 TIGR02946 acyl_WS_DGAT acyltra 88.3 4.9 0.00011 42.3 11.7 165 253-447 231-441 (446)
91 PRK11578 macrolide transporter 87.9 0.42 9.1E-06 49.5 3.1 29 103-131 68-96 (370)
92 PLN02226 2-oxoglutarate dehydr 87.8 0.53 1.2E-05 50.5 3.9 29 102-130 140-168 (463)
93 PRK01202 glycine cleavage syst 87.6 0.32 6.9E-06 43.2 1.8 26 105-131 39-64 (127)
94 PLN02983 biotin carboxyl carri 86.8 0.6 1.3E-05 46.4 3.3 28 101-128 246-273 (274)
95 PRK09439 PTS system glucose-sp 86.8 1 2.2E-05 42.0 4.8 28 105-132 101-128 (169)
96 TIGR03309 matur_yqeB selenium- 86.5 1.3 2.8E-05 43.9 5.4 48 107-154 174-231 (256)
97 TIGR00527 gcvH glycine cleavag 86.1 0.45 9.7E-06 42.2 1.9 21 111-131 43-63 (127)
98 PF13437 HlyD_3: HlyD family s 85.9 1.7 3.6E-05 36.3 5.2 49 103-151 6-62 (105)
99 PRK09824 PTS system beta-gluco 85.6 0.74 1.6E-05 51.3 3.7 27 108-134 562-588 (627)
100 COG0509 GcvH Glycine cleavage 85.4 0.56 1.2E-05 41.8 2.2 35 112-146 47-86 (131)
101 PF13533 Biotin_lipoyl_2: Biot 85.4 0.59 1.3E-05 34.5 1.9 22 132-153 16-37 (50)
102 TIGR03794 NHPM_micro_HlyD NHPM 85.2 0.73 1.6E-05 48.6 3.3 29 103-131 65-93 (421)
103 COG2190 NagE Phosphotransferas 84.8 1.2 2.6E-05 41.0 4.0 28 105-132 86-113 (156)
104 PRK05641 putative acetyl-CoA c 83.4 1.2 2.5E-05 41.0 3.4 25 103-127 128-152 (153)
105 TIGR01000 bacteriocin_acc bact 83.3 0.92 2E-05 48.5 3.1 30 102-131 65-94 (457)
106 cd06850 biotinyl_domain The bi 83.2 1.3 2.8E-05 33.4 3.1 25 103-127 43-67 (67)
107 cd00210 PTS_IIA_glc PTS_IIA, P 82.5 1 2.2E-05 39.9 2.6 28 105-132 79-106 (124)
108 TIGR01995 PTS-II-ABC-beta PTS 82.0 1.3 2.8E-05 49.3 3.7 28 106-133 544-571 (610)
109 PF00358 PTS_EIIA_1: phosphoen 80.9 0.82 1.8E-05 40.9 1.4 27 105-131 83-109 (132)
110 COG0845 AcrA Membrane-fusion p 80.8 1.4 3E-05 43.9 3.1 27 103-129 73-99 (372)
111 TIGR00830 PTBA PTS system, glu 80.7 1.2 2.7E-05 39.2 2.5 28 106-133 80-107 (121)
112 PTZ00144 dihydrolipoamide succ 80.0 1.8 3.8E-05 46.1 3.7 29 102-130 93-121 (418)
113 cd06849 lipoyl_domain Lipoyl d 79.6 1.9 4.1E-05 32.0 2.9 25 103-127 50-74 (74)
114 PRK09294 acyltransferase PapA5 79.3 45 0.00098 34.8 14.1 44 338-381 291-347 (416)
115 TIGR01347 sucB 2-oxoglutarate 79.2 2.2 4.7E-05 45.2 4.1 30 101-130 48-77 (403)
116 PRK14875 acetoin dehydrogenase 79.0 2.1 4.7E-05 43.2 3.9 29 103-131 52-80 (371)
117 PRK05704 dihydrolipoamide succ 78.8 2.2 4.9E-05 45.1 4.1 30 102-131 51-80 (407)
118 PLN02528 2-oxoisovalerate dehy 78.6 2.3 5E-05 45.2 4.1 31 101-131 46-76 (416)
119 cd06663 Biotinyl_lipoyl_domain 78.6 2.2 4.8E-05 33.2 3.1 25 103-127 49-73 (73)
120 PF01597 GCV_H: Glycine cleava 77.8 1.5 3.3E-05 38.5 2.1 33 112-144 39-76 (122)
121 PRK10255 PTS system N-acetyl g 77.0 2.8 6.1E-05 47.0 4.3 28 106-133 580-607 (648)
122 TIGR00999 8a0102 Membrane Fusi 76.2 3.2 6.9E-05 40.3 4.1 28 104-131 96-123 (265)
123 COG0508 AceF Pyruvate/2-oxoglu 74.0 3.6 7.8E-05 43.6 4.1 29 102-130 51-79 (404)
124 cd06251 M14_ASTE_ASPA_like_1 A 73.8 6.3 0.00014 39.6 5.6 26 104-129 226-251 (287)
125 cd06253 M14_ASTE_ASPA_like_3 A 71.7 6.6 0.00014 39.8 5.2 23 105-127 237-259 (298)
126 PF13375 RnfC_N: RnfC Barrel s 71.1 2.4 5.3E-05 36.1 1.6 26 104-129 38-63 (101)
127 COG0157 NadC Nicotinate-nucleo 70.7 3.7 8.1E-05 41.2 3.1 25 107-131 65-89 (280)
128 TIGR01349 PDHac_trf_mito pyruv 70.1 5.2 0.00011 42.8 4.2 30 102-131 48-78 (435)
129 PRK14042 pyruvate carboxylase 68.6 5 0.00011 44.6 3.8 27 103-129 569-595 (596)
130 PRK09282 pyruvate carboxylase 68.5 4.5 9.8E-05 45.0 3.4 26 103-128 566-591 (592)
131 cd06250 M14_PaAOTO_like An unc 67.7 9.8 0.00021 39.6 5.6 24 104-127 296-319 (359)
132 PF05896 NQRA: Na(+)-transloca 65.8 4.2 9.1E-05 40.4 2.3 21 108-131 41-61 (257)
133 PRK08072 nicotinate-nucleotide 65.6 5.7 0.00012 40.0 3.2 24 108-131 66-89 (277)
134 PRK11892 pyruvate dehydrogenas 65.2 7.1 0.00015 42.2 4.0 30 101-130 50-80 (464)
135 TIGR00998 8a0101 efflux pump m 64.9 8.9 0.00019 38.7 4.5 54 90-149 204-264 (334)
136 PF00668 Condensation: Condens 64.5 1.3E+02 0.0028 28.6 12.5 32 418-449 129-160 (301)
137 cd06252 M14_ASTE_ASPA_like_2 A 63.9 15 0.00032 37.5 5.9 23 105-127 252-274 (316)
138 PRK06543 nicotinate-nucleotide 62.7 6.9 0.00015 39.5 3.2 25 107-131 66-90 (281)
139 cd01572 QPRTase Quinolinate ph 62.2 7.8 0.00017 38.7 3.5 28 104-131 56-83 (268)
140 TIGR01235 pyruv_carbox pyruvat 62.2 17 0.00036 43.7 6.7 66 88-153 1020-1109(1143)
141 TIGR02643 T_phosphoryl thymidi 62.0 5.7 0.00012 42.4 2.6 24 105-128 379-402 (437)
142 PRK05820 deoA thymidine phosph 61.2 6.1 0.00013 42.3 2.6 30 100-129 375-404 (440)
143 PRK05742 nicotinate-nucleotide 61.1 7.7 0.00017 39.0 3.2 24 108-131 68-91 (277)
144 PRK06096 molybdenum transport 60.6 7.8 0.00017 39.1 3.1 25 107-131 62-86 (284)
145 PRK11856 branched-chain alpha- 60.3 9.3 0.0002 40.4 3.8 30 102-131 51-80 (411)
146 PF01333 Apocytochr_F_C: Apocy 59.7 11 0.00023 33.0 3.4 40 103-147 9-61 (118)
147 cd01573 modD_like ModD; Quinol 59.3 8.4 0.00018 38.6 3.1 26 106-131 56-81 (272)
148 PRK07428 nicotinate-nucleotide 59.1 8.5 0.00018 39.0 3.1 25 107-131 73-97 (288)
149 PRK06978 nicotinate-nucleotide 58.7 8.7 0.00019 39.0 3.1 23 108-130 84-106 (294)
150 cd01568 QPRTase_NadC Quinolina 58.6 9.1 0.0002 38.2 3.2 27 105-131 56-82 (269)
151 TIGR02645 ARCH_P_rylase putati 58.2 7.8 0.00017 42.1 2.8 33 98-130 439-471 (493)
152 PRK09016 quinolinate phosphori 58.1 9 0.0002 38.9 3.1 23 108-130 87-109 (296)
153 PF07831 PYNP_C: Pyrimidine nu 58.0 13 0.00028 29.9 3.4 24 132-155 36-59 (75)
154 PRK10476 multidrug resistance 57.9 8.5 0.00018 39.4 3.0 46 103-148 215-267 (346)
155 PF09891 DUF2118: Uncharacteri 57.8 6.6 0.00014 36.0 1.9 20 132-151 94-113 (150)
156 TIGR02994 ectoine_eutE ectoine 57.2 20 0.00042 36.9 5.4 24 105-128 263-286 (325)
157 PLN02716 nicotinate-nucleotide 56.8 10 0.00022 38.8 3.2 24 108-131 80-103 (308)
158 PRK06078 pyrimidine-nucleoside 56.7 8.8 0.00019 41.0 2.9 29 103-131 373-401 (434)
159 TIGR02644 Y_phosphoryl pyrimid 56.7 8.3 0.00018 40.9 2.7 29 102-130 370-398 (405)
160 PF01551 Peptidase_M23: Peptid 56.7 32 0.0007 28.1 5.8 47 102-153 19-76 (96)
161 PRK05848 nicotinate-nucleotide 56.4 10 0.00022 38.1 3.1 24 108-131 60-83 (273)
162 PRK06106 nicotinate-nucleotide 56.3 10 0.00022 38.2 3.2 26 106-131 70-95 (281)
163 PLN02744 dihydrolipoyllysine-r 56.0 11 0.00024 41.4 3.6 29 101-129 160-189 (539)
164 PRK04350 thymidine phosphoryla 55.7 9 0.00019 41.6 2.8 33 98-130 431-463 (490)
165 PRK07896 nicotinate-nucleotide 55.2 11 0.00023 38.2 3.1 25 107-131 77-101 (289)
166 COG3608 Predicted deacylase [G 54.8 9 0.0002 39.5 2.5 27 103-129 262-288 (331)
167 TIGR03327 AMP_phos AMP phospho 54.5 9.3 0.0002 41.5 2.6 33 98-130 440-472 (500)
168 TIGR00078 nadC nicotinate-nucl 54.5 12 0.00025 37.4 3.2 24 108-131 56-79 (265)
169 TIGR01334 modD putative molybd 54.4 12 0.00026 37.7 3.2 25 107-131 61-85 (277)
170 TIGR00999 8a0102 Membrane Fusi 54.1 17 0.00037 35.2 4.3 23 132-154 102-124 (265)
171 PRK08385 nicotinate-nucleotide 53.6 12 0.00026 37.7 3.1 25 107-131 59-83 (278)
172 PRK14040 oxaloacetate decarbox 53.5 13 0.00027 41.5 3.6 25 103-127 568-592 (593)
173 PLN00140 alcohol acetyltransfe 52.0 16 0.00034 39.0 3.9 30 418-447 148-177 (444)
174 cd06254 M14_ASTE_ASPA_like_4 A 52.0 13 0.00028 37.4 3.1 24 104-127 230-253 (288)
175 TIGR02712 urea_carbox urea car 51.7 12 0.00027 45.0 3.3 26 103-128 1176-1201(1201)
176 PRK05305 phosphatidylserine de 51.6 24 0.00051 33.8 4.7 43 105-148 150-204 (206)
177 TIGR00164 PS_decarb_rel phosph 51.3 25 0.00054 33.2 4.8 40 106-146 131-181 (189)
178 cd06255 M14_ASTE_ASPA_like_5 A 51.1 13 0.00029 37.4 3.1 26 104-129 238-263 (293)
179 PRK15136 multidrug efflux syst 51.1 18 0.0004 37.9 4.2 47 103-149 222-275 (390)
180 PRK12999 pyruvate carboxylase; 50.8 14 0.00031 44.3 3.6 26 103-128 1120-1145(1146)
181 PLN02663 hydroxycinnamoyl-CoA: 50.5 17 0.00037 38.3 3.9 30 418-447 145-174 (431)
182 PF02666 PS_Dcarbxylase: Phosp 49.1 22 0.00048 33.7 4.0 54 93-147 134-201 (202)
183 TIGR01730 RND_mfp RND family e 48.6 18 0.00039 35.9 3.5 46 103-148 141-193 (322)
184 PF01551 Peptidase_M23: Peptid 48.2 15 0.00033 30.0 2.5 24 107-130 52-75 (96)
185 PF02458 Transferase: Transfer 47.8 22 0.00047 37.1 4.2 30 419-448 148-177 (432)
186 PRK03598 putative efflux pump 46.7 21 0.00046 36.2 3.8 47 103-149 210-263 (331)
187 COG1566 EmrA Multidrug resista 46.1 19 0.00042 37.4 3.4 33 91-128 53-85 (352)
188 PLN02481 Omega-hydroxypalmitat 45.7 23 0.0005 37.5 4.0 30 418-447 158-187 (436)
189 PRK08662 nicotinate phosphorib 45.6 18 0.00039 37.5 3.1 26 104-131 69-94 (343)
190 PRK10559 p-hydroxybenzoic acid 45.1 35 0.00075 34.6 5.0 53 91-149 155-214 (310)
191 PRK03934 phosphatidylserine de 44.3 32 0.00069 34.3 4.5 43 106-149 211-265 (265)
192 PF09891 DUF2118: Uncharacteri 44.2 26 0.00056 32.1 3.5 28 104-131 88-115 (150)
193 PRK07188 nicotinate phosphorib 43.1 24 0.00052 36.7 3.5 26 106-131 71-96 (352)
194 COG4770 Acetyl/propionyl-CoA c 42.8 19 0.00041 39.6 2.8 26 103-128 619-644 (645)
195 cd00210 PTS_IIA_glc PTS_IIA, P 42.3 31 0.00068 30.5 3.6 20 132-151 84-103 (124)
196 PF12700 HlyD_2: HlyD family s 42.1 26 0.00057 34.8 3.6 51 102-153 2-55 (328)
197 PRK14844 bifunctional DNA-dire 41.8 27 0.00059 45.0 4.1 19 109-127 2423-2441(2836)
198 TIGR02971 heterocyst_DevB ABC 41.5 19 0.00042 36.3 2.5 22 132-153 30-51 (327)
199 COG2190 NagE Phosphotransferas 40.9 26 0.00057 32.3 3.0 20 132-151 91-110 (156)
200 PRK06559 nicotinate-nucleotide 40.9 25 0.00053 35.7 3.1 26 106-131 71-98 (290)
201 PRK09783 copper/silver efflux 40.1 31 0.00068 36.4 3.9 50 91-146 210-266 (409)
202 TIGR01936 nqrA NADH:ubiquinone 39.8 17 0.00038 39.0 1.9 27 105-131 38-64 (447)
203 PLN03157 spermidine hydroxycin 39.6 32 0.00069 36.6 3.9 30 418-447 146-175 (447)
204 TIGR03794 NHPM_micro_HlyD NHPM 38.7 39 0.00086 35.6 4.4 47 103-149 260-317 (421)
205 PF00529 HlyD: HlyD family sec 38.6 17 0.00037 35.8 1.5 22 132-153 15-36 (305)
206 PRK10871 nlpD lipoprotein NlpD 38.2 61 0.0013 33.4 5.5 48 103-154 236-294 (319)
207 TIGR01843 type_I_hlyD type I s 38.0 38 0.00082 35.1 4.1 51 91-147 272-331 (423)
208 COG1038 PycA Pyruvate carboxyl 37.9 23 0.00051 40.6 2.6 26 103-128 1123-1148(1149)
209 PF00358 PTS_EIIA_1: phosphoen 37.6 34 0.00074 30.6 3.2 20 132-151 88-107 (132)
210 PF06898 YqfD: Putative stage 37.4 20 0.00044 37.6 1.9 24 103-126 196-226 (385)
211 PRK11556 multidrug efflux syst 37.2 38 0.00082 35.8 4.0 22 132-153 101-122 (415)
212 PRK11578 macrolide transporter 36.6 46 0.00099 34.4 4.4 21 132-152 75-95 (370)
213 PRK09859 multidrug efflux syst 35.5 29 0.00062 36.2 2.7 21 132-152 75-95 (385)
214 PRK10871 nlpD lipoprotein NlpD 35.5 20 0.00043 36.9 1.5 22 108-129 270-291 (319)
215 cd01134 V_A-ATPase_A V/A-type 35.4 49 0.0011 34.7 4.3 18 111-128 54-71 (369)
216 PRK05352 Na(+)-translocating N 35.2 29 0.00063 37.3 2.8 27 105-131 39-65 (448)
217 TIGR01000 bacteriocin_acc bact 35.1 44 0.00096 35.7 4.1 22 132-153 73-94 (457)
218 TIGR02876 spore_yqfD sporulati 34.6 24 0.00052 37.1 2.0 24 103-126 193-223 (382)
219 COG1726 NqrA Na+-transporting 34.3 22 0.00047 37.1 1.5 18 111-131 44-61 (447)
220 PF07247 AATase: Alcohol acety 34.3 42 0.0009 35.8 3.8 33 417-449 140-172 (480)
221 COG0213 DeoA Thymidine phospho 34.0 33 0.00072 36.5 2.8 22 132-153 381-402 (435)
222 TIGR00830 PTBA PTS system, glu 33.7 38 0.00083 29.8 2.8 20 132-151 84-103 (121)
223 PF13375 RnfC_N: RnfC Barrel s 32.8 53 0.0012 27.9 3.4 20 132-151 44-63 (101)
224 PF01333 Apocytochr_F_C: Apocy 32.3 15 0.00033 32.0 0.1 16 110-125 46-61 (118)
225 PRK09578 periplasmic multidrug 32.3 44 0.00095 34.8 3.5 22 132-153 77-98 (385)
226 cd00516 PRTase_typeII Phosphor 32.2 42 0.00092 33.2 3.2 28 104-131 48-75 (281)
227 COG4908 Uncharacterized protei 32.1 6.7E+02 0.014 26.9 12.2 83 254-354 218-317 (439)
228 PF04952 AstE_AspA: Succinylgl 32.0 72 0.0016 31.6 4.8 47 104-150 227-290 (292)
229 cd01571 NAPRTase_B Nicotinate 31.8 47 0.001 33.8 3.5 26 104-131 52-77 (302)
230 KOG0558 Dihydrolipoamide trans 31.1 20 0.00043 37.2 0.6 34 120-153 72-105 (474)
231 PRK09439 PTS system glucose-sp 29.6 47 0.001 31.0 2.8 20 132-151 106-125 (169)
232 TIGR01042 V-ATPase_V1_A V-type 29.5 61 0.0013 36.1 4.0 43 111-153 123-181 (591)
233 COG0261 RplU Ribosomal protein 29.2 66 0.0014 27.6 3.3 18 131-148 24-41 (103)
234 PRK12784 hypothetical protein; 29.0 76 0.0016 26.0 3.4 39 87-131 40-78 (84)
235 KOG0557 Dihydrolipoamide acety 28.8 38 0.00083 36.3 2.3 23 132-154 58-80 (470)
236 TIGR01945 rnfC electron transp 28.7 36 0.00077 36.4 2.1 29 108-136 43-74 (435)
237 cd04457 S1_S28E S1_S28E: S28E, 28.7 72 0.0016 24.7 3.1 50 105-154 3-55 (60)
238 COG4072 Uncharacterized protei 28.1 57 0.0012 29.5 2.9 29 103-131 98-126 (161)
239 PRK05305 phosphatidylserine de 28.1 1.3E+02 0.0028 28.7 5.7 49 104-152 99-174 (206)
240 PRK15030 multidrug efflux syst 27.6 42 0.00091 35.2 2.4 22 132-153 79-100 (397)
241 PF07687 M20_dimer: Peptidase 26.9 60 0.0013 26.7 2.8 29 420-448 79-107 (111)
242 PRK02693 apocytochrome f; Revi 26.5 94 0.002 31.4 4.4 16 132-147 240-255 (312)
243 CHL00037 petA cytochrome f 25.2 93 0.002 31.7 4.1 40 103-147 210-263 (320)
244 cd06848 GCS_H Glycine cleavage 24.8 1.6E+02 0.0034 24.4 5.0 23 132-154 35-57 (96)
245 TIGR00163 PS_decarb phosphatid 24.6 64 0.0014 31.6 2.9 34 115-148 189-236 (238)
246 PF02666 PS_Dcarbxylase: Phosp 24.0 28 0.00061 33.0 0.3 18 109-126 185-202 (202)
247 PTZ00403 phosphatidylserine de 23.8 70 0.0015 33.4 3.1 48 104-151 280-340 (353)
248 PRK03140 phosphatidylserine de 22.9 79 0.0017 31.4 3.2 14 134-147 243-256 (259)
249 TIGR01108 oadA oxaloacetate de 22.2 61 0.0013 36.1 2.5 22 103-124 561-582 (582)
250 PRK02597 rpoC2 DNA-directed RN 21.7 1.3E+02 0.0027 36.9 5.0 21 110-130 405-425 (1331)
251 COG2258 Uncharacterized protei 20.8 1.2E+02 0.0026 29.3 3.9 61 93-153 76-164 (210)
252 COG0845 AcrA Membrane-fusion p 20.3 75 0.0016 31.3 2.5 21 132-152 80-100 (372)
253 TIGR00164 PS_decarb_rel phosph 20.3 2.2E+02 0.0047 26.8 5.5 21 132-152 134-154 (189)
254 PRK11536 6-N-hydroxylaminopuri 20.2 1.3E+02 0.0028 29.3 4.0 61 92-152 78-166 (223)
No 1
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=3.5e-90 Score=718.84 Aligned_cols=436 Identities=69% Similarity=1.035 Sum_probs=337.2
Q ss_pred Ccc-ceeeeccc---cceeecccccccCCC---cccccceee--eeeccceeeEeccceecc-cCcc-cccCCchhhHHh
Q 012864 1 MIW-GIVRRKIT---SAQVIGQSVSKIGPR---CHATAQKEA--ILTCRGFQRVQRSSYHIL-SGNY-VCSTPRSEVIEL 69 (455)
Q Consensus 1 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~s~~~~-~~~~-~~~~~~~~~~~~ 69 (455)
||+ +++||.-+ |+|+.+.+++.-+-. |.-.|-++. +++-+...| |+|-+ -++| .|..+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---- 72 (463)
T PLN02226 1 MMLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLHRGNHAH----SFHNLALPGNSGISRSASL---- 72 (463)
T ss_pred CcHHHHHHhhccCCCChhhhhhhhhhchhhccCcccccccccchhhhcccccc----chhhcccCCccccCCchhh----
Confidence 554 55565544 899998888776533 333333322 222222222 23321 1111 22222111
Q ss_pred hhcccccccccccccCCCCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eec
Q 012864 70 IQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIA 134 (455)
Q Consensus 70 ~~~~~~~~~~~r~~~~~~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~ 134 (455)
-...+++|.|.|....+.+++|+||+||++|+||+|.+|+|++||.|++||+||+||||| |++
T Consensus 73 --~~~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 73 --VSSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150 (463)
T ss_pred --hhhhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence 125678899999887666699999999999999999999999999999999999999999 999
Q ss_pred cCCCeecCCCEEEEEecCCCcccccccccccCCCCCCCCCCCCCCCCCCCcccCccccCCC-CCCCCCCCCCCCCCCCCC
Q 012864 135 KEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-PSEPPPTAKKPTSPPSKP 213 (455)
Q Consensus 135 ~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sPavr~~~-~s~~~~~~~~~~~~~~~~ 213 (455)
++||.|++|++|+.|++++++.+...+..+.+..+.+.+..+........+.++|++|+.. ++++.+ +. .
T Consensus 151 ~eGd~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~----~~-----~ 221 (463)
T PLN02226 151 KEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPP----PK-----Q 221 (463)
T ss_pred CCCCEecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCC----Cc-----c
Confidence 9999999999999997544321110000000000000000000001112345667765431 111100 00 0
Q ss_pred CCCCCCCCCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHH
Q 012864 214 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV 293 (455)
Q Consensus 214 ~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a 293 (455)
....+..+....++.+||+++||.||++|++||+++||||++.|+|+|+|+++|+++++.+.+++|+|+||++||+||++
T Consensus 222 ~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva 301 (463)
T PLN02226 222 SAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV 301 (463)
T ss_pred cccCcccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHH
Confidence 00000100111245689999999999999999999999999999999999999999997766666999999999999999
Q ss_pred HHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEE
Q 012864 294 SALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTI 373 (455)
Q Consensus 294 ~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftI 373 (455)
+||++||++|++|+++.|+++++|||||||++++||+||||+|+|++++.||++++++|++++|+|+|+++||+||||||
T Consensus 302 ~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTI 381 (463)
T PLN02226 302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTV 381 (463)
T ss_pred HHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 374 SNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 374 SNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
||+|+||+++|+|||||||+||||+|+++++|++.||++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus 382 SNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl 461 (463)
T PLN02226 382 SNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLL 461 (463)
T ss_pred ECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 012864 454 DI 455 (455)
Q Consensus 454 ~~ 455 (455)
++
T Consensus 462 ~~ 463 (463)
T PLN02226 462 DI 463 (463)
T ss_pred cC
Confidence 75
No 2
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2.2e-84 Score=673.26 Aligned_cols=367 Identities=54% Similarity=0.846 Sum_probs=304.7
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|.++|+||+||++|+||+|.+|+|++||.|++||+||+||||| |++++||.|++|++|++|++++
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 4579999999999999999999999999999999999999999 8999999999999999998765
Q ss_pred Ccccccc-cccccCCCCCCCCCCCCCCCCCCCcccCccccCC-----------CCCCCCCCCCCC-------C---CCCC
Q 012864 154 EGVAQAA-SAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDK-----------TPSEPPPTAKKP-------T---SPPS 211 (455)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sPavr~~-----------~~s~~~~~~~~~-------~---~~~~ 211 (455)
+...... +....+..+.+.+...........+.++|++|++ .++|+.++..+. . .+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 4221100 0000000000000000000111124579999875 456766553211 0 0000
Q ss_pred CCCCC-CCCC--CCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHH
Q 012864 212 KPMAS-EPQL--PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 288 (455)
Q Consensus 212 ~~~~~-~~~~--~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ 288 (455)
.+.+. .... ......+.+||+++||+||++|++||+++||||++.|+|+|+|+++|+++++.+.++.|+|+|+++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l 240 (407)
T PRK05704 161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF 240 (407)
T ss_pred CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence 00000 0000 01112456899999999999999999999999999999999999999999977666668999999999
Q ss_pred HHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCC
Q 012864 289 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAG 368 (455)
Q Consensus 289 ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~g 368 (455)
+||+++||++||.+|++|+++++++++++||||||++++||+||||+|+|++|+.||++++++|++++|+|+|+++||+|
T Consensus 241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~g 320 (407)
T PRK05704 241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTG 320 (407)
T ss_pred HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcCh
Q 012864 369 GTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDP 448 (455)
Q Consensus 369 gTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P 448 (455)
|||||||+|+||+.+|+|||||||+||||+|+++++|++.||+++++++|+||||||||||||++||+||++|+++||||
T Consensus 321 gTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p 400 (407)
T PRK05704 321 GTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP 400 (407)
T ss_pred ceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q 012864 449 RRLLLDI 455 (455)
Q Consensus 449 ~~lll~~ 455 (455)
+.||+++
T Consensus 401 ~~ll~~~ 407 (407)
T PRK05704 401 ERLLLDL 407 (407)
T ss_pred HHHhhcC
Confidence 9999875
No 3
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=2.4e-84 Score=670.64 Aligned_cols=355 Identities=57% Similarity=0.908 Sum_probs=294.0
Q ss_pred CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
..+.+|+||+||++|+||+|.+|+|++||.|++||+||+||||| +++++||.|++|++|++|++.
T Consensus 42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 55799999999999999999999999999999999999999999 899999999999999999765
Q ss_pred CCcccccccccccCCCCC-CCCCC-----CCCCC-CCCCcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012864 153 GEGVAQAASAEKAAAQPP-PAEEK-----PSAEK-QTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDR 225 (455)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~-~~~~~~~sPavr~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (455)
+++.... .....+..+. +.+.. +.... ......++|++|+... .+.+.+.+ .+.......
T Consensus 122 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~-----------~~~~~~~~-~~~~~~~~~ 188 (418)
T PTZ00144 122 GAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP-----------APAAKPPP-TPVARADPR 188 (418)
T ss_pred Ccccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhcccc-----------CCCCCCCC-CCccccCCC
Confidence 4321100 0000000000 00000 00000 0001123344432110 00000000 000000112
Q ss_pred cceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEE
Q 012864 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 305 (455)
Q Consensus 226 ~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~ 305 (455)
++.+||+++||+||++|++||+++||||++.|+|+|+|+++|+++++.+.+++|+|+|+++||+||+++||++||.+|++
T Consensus 189 ~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~ 268 (418)
T PTZ00144 189 ETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAY 268 (418)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheE
Confidence 35689999999999999999999999999999999999999999997766566999999999999999999999999999
Q ss_pred EeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCee
Q 012864 306 IDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLST 385 (455)
Q Consensus 306 l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~ 385 (455)
|+++++++++++||||||++++||+||||+|+|++++.||++++++|++++|+|+|+++||+||||||||+|++|+++|+
T Consensus 269 ~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~t 348 (418)
T PTZ00144 269 IDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGT 348 (418)
T ss_pred EcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 386 PIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 386 Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
|||||||+||||+|+++++|++.+|+++++++|+||||||||++||++||+||++|+++||||+.||+++
T Consensus 349 pIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~ 418 (418)
T PTZ00144 349 PIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418 (418)
T ss_pred eeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875
No 4
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=6.9e-84 Score=668.40 Aligned_cols=365 Identities=53% Similarity=0.845 Sum_probs=302.1
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCCCc
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGEG 155 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~~~ 155 (455)
++|+||+||++|+||+|.+|+|++||+|++||+||+||||| |++++|+.|++|++|++|+++++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 47999999999999999999999999999999999999999 899999999999999999865432
Q ss_pred ccccccccc-cCCCCCCCCCCCCCCCCCCCcccCccccCC-----------CCCCCCCCCCCC-------C---CCCCCC
Q 012864 156 VAQAASAEK-AAAQPPPAEEKPSAEKQTPESEAAPAVKDK-----------TPSEPPPTAKKP-------T---SPPSKP 213 (455)
Q Consensus 156 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sPavr~~-----------~~s~~~~~~~~~-------~---~~~~~~ 213 (455)
.....+... +.......++.+........+.++|++|++ .++|+.++..+. . .+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 160 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAP 160 (403)
T ss_pred cccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCCC
Confidence 110000000 000000000000000111234579999875 356665543210 0 000000
Q ss_pred CCCCCCCC-CCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHH
Q 012864 214 MASEPQLP-PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAA 292 (455)
Q Consensus 214 ~~~~~~~~-~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~ 292 (455)
.++.+.++ ....++.+||+++||+||++|++||+++||||++.|+|+|+|+++|+++++.+.++.|+|+||++||+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~ 240 (403)
T TIGR01347 161 AAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAV 240 (403)
T ss_pred CcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHH
Confidence 00000000 01124568999999999999999999999999999999999999999999876666799999999999999
Q ss_pred HHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEE
Q 012864 293 VSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFT 372 (455)
Q Consensus 293 a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTft 372 (455)
++||++||.||++|+++++++++++||||||++++||+||||+|+|++|+.||++++++|++++|+|+|+++||+|||||
T Consensus 241 a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfT 320 (403)
T TIGR01347 241 VAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFT 320 (403)
T ss_pred HHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhh
Q 012864 373 ISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLL 452 (455)
Q Consensus 373 ISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~ll 452 (455)
|||+|+||+.+|+|||||||+||||+|+++++|++.||++++|++|+||||||||+|||++||+||++|+++||||+.||
T Consensus 321 ISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll 400 (403)
T TIGR01347 321 ITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLL 400 (403)
T ss_pred EecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 012864 453 LDI 455 (455)
Q Consensus 453 l~~ 455 (455)
++|
T Consensus 401 ~~~ 403 (403)
T TIGR01347 401 LDL 403 (403)
T ss_pred hcC
Confidence 875
No 5
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=9.5e-83 Score=675.14 Aligned_cols=376 Identities=29% Similarity=0.427 Sum_probs=306.1
Q ss_pred cccccccCCC--CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCC-e
Q 012864 78 SRSRLFSSDS--GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGE-T 139 (455)
Q Consensus 78 ~~~r~~~~~~--~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~-~ 139 (455)
.+.|+|++.. +..++|+||+||++|+||+|.+|+|++||.|++||+|||||||| |++++|+ +
T Consensus 98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~ 177 (539)
T PLN02744 98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE 177 (539)
T ss_pred cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence 4578888764 44699999999999999999999999999999999999999999 8999996 7
Q ss_pred ecCCCEEEEEecCCCccc------cc---ccccc----cCC--CC----CCCCCCC--C-C-CC---CCCCcccCccccC
Q 012864 140 VEPGAKIAVISKSGEGVA------QA---ASAEK----AAA--QP----PPAEEKP--S-A-EK---QTPESEAAPAVKD 193 (455)
Q Consensus 140 v~vG~~l~~i~~~~~~~~------~~---~~~~~----~~~--~~----~~~~~~~--~-~-~~---~~~~~~~sPavr~ 193 (455)
|+||++|++|.+++++.. .. .++.. .+. .. .+.+... . . +. ....+.++|++|+
T Consensus 178 v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRr 257 (539)
T PLN02744 178 IKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARK 257 (539)
T ss_pred cCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHH
Confidence 999999999954333210 00 00000 000 00 0000000 0 0 00 1112457899987
Q ss_pred C-----------CCCCCCCCCCCCCC-------CCCCCCC-CCCCCCCCCCcceeeCchHHHHHHHHHHhcccCccEEEE
Q 012864 194 K-----------TPSEPPPTAKKPTS-------PPSKPMA-SEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTT 254 (455)
Q Consensus 194 ~-----------~~s~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~ 254 (455)
+ .++|+.+...+... ....+.+ +.+...+...++++||+++||.||++|++|++++||||+
T Consensus 258 LAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~ 337 (539)
T PLN02744 258 LAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYL 337 (539)
T ss_pred HHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEE
Confidence 5 45676655432110 0000000 000001111235689999999999999999999999999
Q ss_pred EeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEE
Q 012864 255 FNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVI 334 (455)
Q Consensus 255 ~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI 334 (455)
+.|+|+|+|+++|+++++.+.+..|+|+|+++||+||+++||++||.+|++|+++.++++++|||||||++++||+||||
T Consensus 338 ~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVI 417 (539)
T PLN02744 338 TVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVV 417 (539)
T ss_pred EEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcC
Confidence 99999999999999999765555689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCC-CCCCCCeeeecCCCCeEEEEecceeeEEEE--eCCe
Q 012864 335 RNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGG-VYGSLLSTPIINPPQSAILGMHSIVNRPMV--VGGN 411 (455)
Q Consensus 335 ~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG-~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv--~~g~ 411 (455)
+|+|+++|.||++++++|+++|++|+|+++||+||||||||+| +||+.+|+|||||||+|||++|+++++|++ .+|+
T Consensus 418 r~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~ 497 (539)
T PLN02744 418 KDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQ 497 (539)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCe
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999998 4899
Q ss_pred EeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 412 VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 412 i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
|+++++|+||||||||||||++||+||++|+++||||+.|||
T Consensus 498 i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 498 YNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred EEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 999999999999999999999999999999999999998875
No 6
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=2.8e-84 Score=636.62 Aligned_cols=363 Identities=64% Similarity=1.004 Sum_probs=300.6
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
..+++++|-++|+|+||+|.+|++|+||+|+++|.|||||||| +++++||+|..|+.|+.|....
T Consensus 71 s~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 71 SVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGA 150 (457)
T ss_pred ceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCC
Confidence 3799999999999999999999999999999999999999999 8999999999999999998743
Q ss_pred Cccc--ccccccccCCCCCCCCCCCCCCCCCCCcccCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC
Q 012864 154 EGVA--QAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKD-KTPSEPPPTAKKPTSPPSKPMASEPQLPP------KD 224 (455)
Q Consensus 154 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sPavr~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 224 (455)
+.+. +..|+.+++.++...+++++...+.++...+|..+. ..++.+...+. ++..++..++.+++ ..
T Consensus 151 Apa~~~~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~----~a~k~~v~~~~~~p~~~~~~~R 226 (457)
T KOG0559|consen 151 APAKGGASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPA----SAKKPSVAQPKPPPSEGATPSR 226 (457)
T ss_pred CCccccccCCCccCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCc----cccCccccCCCCCcccccCCCc
Confidence 2211 112222111111000000000011111122222110 01110000000 00011111122222 23
Q ss_pred CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304 (455)
Q Consensus 225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa 304 (455)
.+.+++|++||+.||.||++|+++.+.+|.|+||||++|+++|++|++.|.+++|+|+.||.+|+||++.||++.|.+|+
T Consensus 227 ~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNa 306 (457)
T KOG0559|consen 227 SERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNA 306 (457)
T ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCe
Q 012864 305 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS 384 (455)
Q Consensus 305 ~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~ 384 (455)
.|||++|+|++++||+|||+++.||+||||||++.+++.||..+++.|..|||+|+|..+||.||||||||-|.||..++
T Consensus 307 vIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~g 386 (457)
T KOG0559|consen 307 VIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYG 386 (457)
T ss_pred eecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 385 TPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 385 ~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
||||||||+||||++.|.+||++.+|++++||||++.||||||+|||.+|.-||+.+|+++|||..|||+|
T Consensus 387 TPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll~l 457 (457)
T KOG0559|consen 387 TPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 (457)
T ss_pred CcccCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 7
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=8.4e-80 Score=665.44 Aligned_cols=363 Identities=39% Similarity=0.618 Sum_probs=295.0
Q ss_pred CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
++.++|+||+||++|+||+|.+|+|++||.|++||+||+||||| |++++||.|++|++|++|+++
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 45689999999999999999999999999999999999999999 899999999999999999865
Q ss_pred CCcccc-----ccc-c------cccCC-CCC----CCC---C--C-CC-----C-C--C-CCCCcccCccccCC------
Q 012864 153 GEGVAQ-----AAS-A------EKAAA-QPP----PAE---E--K-PS-----A-E--K-QTPESEAAPAVKDK------ 194 (455)
Q Consensus 153 ~~~~~~-----~~~-~------~~~~~-~~~----~~~---~--~-~~-----~-~--~-~~~~~~~sPavr~~------ 194 (455)
++.... ... + ...+. ... ..+ . . .. . . . ....+.++|++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence 432110 000 0 00000 000 000 0 0 00 0 0 0 11134678999875
Q ss_pred -----CCCCCCCCCCCC-------------CCCCCC---CCCCC---C-CCC-C---CCCcceeeCchHHHHHHHHHHhc
Q 012864 195 -----TPSEPPPTAKKP-------------TSPPSK---PMASE---P-QLP-P---KDRERRVPMTRLRKRVATRLKDS 245 (455)
Q Consensus 195 -----~~s~~~~~~~~~-------------~~~~~~---~~~~~---~-~~~-~---~~~~~~vpls~~rk~ia~~m~~S 245 (455)
.++|+.++..+. ..+.+. ..+.. + ..+ + ...++.+||+++||.||++|++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 456665543210 001000 00000 0 000 0 01245789999999999999999
Q ss_pred ccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeC--CeEEEcCCccEEEEE
Q 012864 246 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAV 323 (455)
Q Consensus 246 ~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~--~~i~~~~~vnIgiAV 323 (455)
|+++||||++.|||+|+|+++|+++|+.+.+++|+|+||++||+||+++||++||.||++|++ +.|+++++|||||||
T Consensus 373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv 452 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV 452 (590)
T ss_pred hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence 999999999999999999999999997665556899999999999999999999999999975 479999999999999
Q ss_pred ecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceee
Q 012864 324 GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN 403 (455)
Q Consensus 324 ~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~ 403 (455)
++++||+||||+|+|++||.+|++++++|++++|+|+|+++||+||||||||+|+||+++|+|||||||+||||+|++++
T Consensus 453 ~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~ 532 (590)
T TIGR02927 453 DTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVK 532 (590)
T ss_pred ECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC---C--eEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhh
Q 012864 404 RPMVVG---G--NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRR 450 (455)
Q Consensus 404 ~pvv~~---g--~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~ 450 (455)
+|++.+ | .++++++|+||||||||||||++||+||++|+++||||..
T Consensus 533 ~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 533 RPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred EEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 999852 3 4999999999999999999999999999999999999974
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.1e-79 Score=640.28 Aligned_cols=361 Identities=23% Similarity=0.417 Sum_probs=293.9
Q ss_pred EEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCCCccc
Q 012864 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGEGVA 157 (455)
Q Consensus 93 i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~~~~~ 157 (455)
|+||+||++|+||+|.+|+|++||.|++||+||++|||| |++++||.|++|++|+.|+.++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 579999999999999999999999999999999999999 89999999999999999976543221
Q ss_pred c-cccccccCCCCCCCCCC-CCCCCCCCCcccCccccCC-----------CCCCCCCCCCC---------C---CCCCCC
Q 012864 158 Q-AASAEKAAAQPPPAEEK-PSAEKQTPESEAAPAVKDK-----------TPSEPPPTAKK---------P---TSPPSK 212 (455)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sPavr~~-----------~~s~~~~~~~~---------~---~~~~~~ 212 (455)
. ..++.+....+.+.++. .........+.++|++|++ .++|+.+...+ . ..+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~ 160 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA 160 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence 1 00000000000000000 0001111124678998864 45666544210 0 000000
Q ss_pred C---CCCC------CCCCCCC--CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcc
Q 012864 213 P---MASE------PQLPPKD--RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 281 (455)
Q Consensus 213 ~---~~~~------~~~~~~~--~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~k 281 (455)
+ .+.. +..+... .++.+||+++||+||++|++|+ ++||||++.|+|+|+|+++|+++++.. +..|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~-~~~g~k 238 (416)
T PLN02528 161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENN-TDPTVK 238 (416)
T ss_pred ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhh-hhcCCc
Confidence 0 0000 0000001 2456899999999999999997 899999999999999999999998653 345899
Q ss_pred cchHHHHHHHHHHHhhcCCcccEEEeCC--eEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcC
Q 012864 282 LGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG 359 (455)
Q Consensus 282 ls~~~~~ikA~a~AL~~~P~lNa~l~~~--~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g 359 (455)
+||++||+||+++||++||.+|++|+++ .+++++++||||||++++||++|||+++|++|+.||++++++|++++++|
T Consensus 239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~g 318 (416)
T PLN02528 239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAEN 318 (416)
T ss_pred ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875 69999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHH
Q 012864 360 SISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFL 438 (455)
Q Consensus 360 ~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~-~g~i~~r~~m~lslt~DHRviDGa~aa~Fl 438 (455)
+|+++||+||||||||+|++|+.+|+|||||||+|||++|+++++|++. ||++++|++|+||||||||||||++||+||
T Consensus 319 kL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl 398 (416)
T PLN02528 319 KLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFC 398 (416)
T ss_pred CCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 589999999999999999999999999999
Q ss_pred HHHHHHhcChhhhhccC
Q 012864 439 RRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 439 ~~lk~~LE~P~~lll~~ 455 (455)
++|+++||||+.||+++
T Consensus 399 ~~lk~~le~P~~lll~~ 415 (416)
T PLN02528 399 NEWKSYVEKPELLMLHM 415 (416)
T ss_pred HHHHHHHhCHHHHHhcc
Confidence 99999999999999874
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=7.9e-80 Score=638.69 Aligned_cols=365 Identities=47% Similarity=0.764 Sum_probs=305.1
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|.++|+||+||++|+||+|.+|+||+||+|++||+|+|||||| |++++||+|+||++|++|++++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 4689999999999999999999999999999999999999999 9999999999999999999887
Q ss_pred CcccccccccccCCCCCCCCC-CCCCCCCCCCcccCccccCCC-----------CCCCCCCCCCCC---------CCCCC
Q 012864 154 EGVAQAASAEKAAAQPPPAEE-KPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT---------SPPSK 212 (455)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sPavr~~~-----------~s~~~~~~~~~~---------~~~~~ 212 (455)
+...........+..+.++.+ ............++|++|+++ ++++.+...... .+...
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~ 160 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA 160 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence 642111000000000011000 000011114457889988752 345544322111 00000
Q ss_pred CCCCCCCC-CCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHH
Q 012864 213 PMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 291 (455)
Q Consensus 213 ~~~~~~~~-~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA 291 (455)
..+..+.. .....++++|++++||.|+++|..|++++||+|.+.++|++.|+++|++++..+.++ |.|+||++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA 239 (404)
T COG0508 161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA 239 (404)
T ss_pred cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence 00000100 123457889999999999999999999999999999999999999999999877644 9999999999999
Q ss_pred HHHHhhcCCcccEEEeCC--eEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCC
Q 012864 292 AVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGG 369 (455)
Q Consensus 292 ~a~AL~~~P~lNa~l~~~--~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~gg 369 (455)
++.||++||.+|++++++ .+++++++|||+||++++||++|||+|++++++.+|++++.+|..++|+|+|+++||+||
T Consensus 240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~gg 319 (404)
T COG0508 240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGG 319 (404)
T ss_pred HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCc
Confidence 999999999999999875 799999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChh
Q 012864 370 TFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 449 (455)
Q Consensus 370 TftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~ 449 (455)
||||||+|+||+..|+||||+||+|||++|++.++|++.+++++++++|+|+||||||++||+++++||.++|++||||.
T Consensus 320 tftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~ 399 (404)
T COG0508 320 TFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPE 399 (404)
T ss_pred eEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 012864 450 RLLLD 454 (455)
Q Consensus 450 ~lll~ 454 (455)
.||++
T Consensus 400 ~ll~~ 404 (404)
T COG0508 400 RLLLE 404 (404)
T ss_pred hhhcC
Confidence 98874
No 10
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=3.6e-81 Score=611.92 Aligned_cols=407 Identities=27% Similarity=0.438 Sum_probs=333.1
Q ss_pred eeccceeeEeccceecccCcccccCCchhhHHhhhcccccccccccccCCCCceEEEEccCCCCCCceEEEEEEeecCCC
Q 012864 37 LTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGD 116 (455)
Q Consensus 37 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd 116 (455)
+.|-...+-.|++.|..+++|.|+..++.+... |...-.....+.++ .++|++.|+||||.|++|.+|||||||
T Consensus 17 ~~Cv~~~~~~~~~~h~skp~~v~l~~~~~~~~s-----~~~~~~~~t~s~~g-vv~f~LsdiGEGI~Ev~vkeWfVKEGD 90 (474)
T KOG0558|consen 17 SVCVPEYFSLSSSLHVSKPFFVTLMKWGGGSRS-----WFSNEAMATDSNSG-VVQFKLSDIGEGIAEVTVKEWFVKEGD 90 (474)
T ss_pred chhHHHHHhhccCccccCcceEEEeccCCcccc-----ccchhhhhcccccc-eEEEEhhhccccceeeeeeeehhhcCC
Confidence 445445566788899999999999987766521 11111111222234 899999999999999999999999999
Q ss_pred eeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCCCcccccccccccCCCCCC-CCCCCCCCC
Q 012864 117 RVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPP-AEEKPSAEK 180 (455)
Q Consensus 117 ~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 180 (455)
+|+++|+|||||+|| |+.+.||.+.||++|..++.++....... ..+.++. .+.....+.
T Consensus 91 tVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e~----s~es~~vs~~~~~~~~~ 166 (474)
T KOG0558|consen 91 TVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDSPED----SDESPAVSLGESKQGEE 166 (474)
T ss_pred cHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCCccc----CCccccccCCCCchhhh
Confidence 999999999999999 89999999999999999998775332211 1111111 111122234
Q ss_pred CCCCcccCccccCC-----------CCCCCCCCCCC----------CCC--CC--------CCCCCCCCCCCCCCCccee
Q 012864 181 QTPESEAAPAVKDK-----------TPSEPPPTAKK----------PTS--PP--------SKPMASEPQLPPKDRERRV 229 (455)
Q Consensus 181 ~~~~~~~sPavr~~-----------~~s~~~~~~~~----------~~~--~~--------~~~~~~~~~~~~~~~~~~v 229 (455)
...+..++|+|||+ .++|..++..+ |.. ++ +.++++....+.-..++++
T Consensus 167 ~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~ 246 (474)
T KOG0558|consen 167 SLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTV 246 (474)
T ss_pred hccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCccccccee
Confidence 45567899999985 24444443211 100 00 0111111111222457899
Q ss_pred eCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeC-
Q 012864 230 PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG- 308 (455)
Q Consensus 230 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~- 308 (455)
|+.+++|+|.+.|+.+. .||||.+.+|||+|.|+++|+++++. .++.|+|+|||+||+||+++||.+||.+|+++|+
T Consensus 247 plrGf~rAMvKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~-a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~ 324 (474)
T KOG0558|consen 247 PLRGFSRAMVKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKEN-AKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEE 324 (474)
T ss_pred echhHHHHHHHHHHHHh-cCCccccccccChHHHHHHHHHHhhh-hhhcCceeeehHHHHHHHHHHHhhCccccchhhhh
Confidence 99999999999999996 48999999999999999999999875 4578999999999999999999999999999987
Q ss_pred -CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeee
Q 012864 309 -DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPI 387 (455)
Q Consensus 309 -~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pi 387 (455)
.+|+++..+|||+|++++.||+||+|+|++.+|+.||++|+++|++.++.|+|+++|+.|||||+||+|.+|++|..|+
T Consensus 325 ~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~ 404 (474)
T KOG0558|consen 325 SENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPV 404 (474)
T ss_pred hhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecceeeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 388 INPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 388 i~~Pq~aIL~vG~i~~~pvv~-~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
|+|||+||.++|+|..-|.+. .|++....+|.++|++||||+||+..|||.+.||+|||||+.|||+|
T Consensus 405 i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~l 473 (474)
T KOG0558|consen 405 IMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQL 473 (474)
T ss_pred cccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhcc
Confidence 999999999999999999995 68999999999999999999999999999999999999999999875
No 11
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=6.7e-79 Score=637.44 Aligned_cols=360 Identities=33% Similarity=0.478 Sum_probs=294.4
Q ss_pred EEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCe-ecCCCEEEEEecCCCc
Q 012864 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGET-VEPGAKIAVISKSGEG 155 (455)
Q Consensus 92 ~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~-v~vG~~l~~i~~~~~~ 155 (455)
+|+||+||++|+||+|.+|+|++||.|++||+||+||||| |++++|++ |++|++|++|++++++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 3789999999999999999999999999999999999999 89999999 9999999999764332
Q ss_pred cc-c--------c--c--cccccCC-C---CCC--CCCCC--CC----C----CCCCCcccCccccCC-----------C
Q 012864 156 VA-Q--------A--A--SAEKAAA-Q---PPP--AEEKP--SA----E----KQTPESEAAPAVKDK-----------T 195 (455)
Q Consensus 156 ~~-~--------~--~--~~~~~~~-~---~~~--~~~~~--~~----~----~~~~~~~~sPavr~~-----------~ 195 (455)
.. . . . +....+. . +.+ .+... .. . .....+.++|++|++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 11 0 0 0 0000000 0 000 00000 00 0 001124578988864 4
Q ss_pred CCCCCCCCCCC-------C----CCCCCCCC--CCC--CCC-CCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeee
Q 012864 196 PSEPPPTAKKP-------T----SPPSKPMA--SEP--QLP-PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVD 259 (455)
Q Consensus 196 ~s~~~~~~~~~-------~----~~~~~~~~--~~~--~~~-~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evD 259 (455)
++|+.++..+. . .+.+.+.+ ..+ ..+ ....++.+||+++||.|+++|++|++++||+|++.++|
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd 240 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECN 240 (435)
T ss_pred CCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEE
Confidence 56665543210 0 01000000 000 000 11124578999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCC
Q 012864 260 MTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSER 339 (455)
Q Consensus 260 vt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~ 339 (455)
+|+|+++|+++++.+. + |.|+||++||+||+++||++||.||++|++++|+++++|||||||++++||+||||+|+|+
T Consensus 241 ~t~l~~~r~~~~~~~~-~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~ 318 (435)
T TIGR01349 241 VDKLLALRKELNAMAS-E-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADA 318 (435)
T ss_pred hHHHHHHHHHHHhhhh-c-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCccc
Confidence 9999999999986542 2 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCe---EeEEc
Q 012864 340 MNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGN---VVPRP 416 (455)
Q Consensus 340 ~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~---i~~r~ 416 (455)
+|+.||++++++|++++|+|+|+++||+||||||||+|++|+.+|+|||||||+|||++|++.++|++.+|+ +++++
T Consensus 319 ~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~ 398 (435)
T TIGR01349 319 KGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVAS 398 (435)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998777 99999
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 417 MMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 417 ~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
+|+||||||||||||++||+||++|+++||||+.||+
T Consensus 399 ~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 399 IMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred eEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999998765
No 12
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.6e-78 Score=650.73 Aligned_cols=362 Identities=34% Similarity=0.508 Sum_probs=295.6
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCCC
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
.++|+||+||+ |+||+|.+|+|++||.|++||+||+||||| |++++||.|++|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 58999999999 999999999999999999999999999999 89999999999999999976543
Q ss_pred ccccc-cccc-----ccCCCCCC----CCCC-C--CCC---C---CCCCc-ccCccccCC-----------CCCCCCCCC
Q 012864 155 GVAQA-ASAE-----KAAAQPPP----AEEK-P--SAE---K---QTPES-EAAPAVKDK-----------TPSEPPPTA 203 (455)
Q Consensus 155 ~~~~~-~~~~-----~~~~~~~~----~~~~-~--~~~---~---~~~~~-~~sPavr~~-----------~~s~~~~~~ 203 (455)
..... .+.. ..+....+ .+.. . ... . ....+ .++|++|++ .++|+.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21000 0000 00000000 0000 0 000 0 01123 578988864 456665542
Q ss_pred CCC-------C----CCCCCCC-C-C---CCCCC-----CCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechH
Q 012864 204 KKP-------T----SPPSKPM-A-S---EPQLP-----PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 262 (455)
Q Consensus 204 ~~~-------~----~~~~~~~-~-~---~~~~~-----~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~ 262 (455)
.+. . .++..+. + . .+..+ ....++.+||+++||.||++|++|++++||||++.|+|+|+
T Consensus 275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~ 354 (546)
T TIGR01348 275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354 (546)
T ss_pred eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence 210 0 0100000 0 0 00000 00123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCC
Q 012864 263 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERM 340 (455)
Q Consensus 263 l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~ 340 (455)
|+++|+++++.+. +.|+|+||++||+||+++||++||.+|++|++ +.++++++|||||||++++||+||||+|+|++
T Consensus 355 l~~~r~~l~~~~~-~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~ 433 (546)
T TIGR01348 355 MEAFRKQQNAAVE-KEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRK 433 (546)
T ss_pred HHHHHHHHHhhhh-hcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccC
Confidence 9999999997654 36899999999999999999999999999984 56999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEE
Q 012864 341 NFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYI 420 (455)
Q Consensus 341 sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~l 420 (455)
||.+|++++++|++++|+|+|+++||+||||||||+|++|+++|+|||||||+|||++|+++++|++.+|+++++++|+|
T Consensus 434 sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~l 513 (546)
T TIGR01348 434 GITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPL 513 (546)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 421 ALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 421 slt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
|||||||||||++||+||++|+++||||+.||+
T Consensus 514 tls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 514 SLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred eEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999998775
No 13
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=3.3e-74 Score=627.50 Aligned_cols=364 Identities=29% Similarity=0.474 Sum_probs=295.7
Q ss_pred CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
.+.++|+||+|| |+||+|.+|+|++||.|++||+||+||||| |++++||.|++|++|+.|+++
T Consensus 204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 456899999999 999999999999999999999999999999 899999999999999999865
Q ss_pred CCcccccccc----cccCC--C-CCCCCCCC--C-C--C--CCCCCcccCccccCC-----------CCCCCCCCCCC--
Q 012864 153 GEGVAQAASA----EKAAA--Q-PPPAEEKP--S-A--E--KQTPESEAAPAVKDK-----------TPSEPPPTAKK-- 205 (455)
Q Consensus 153 ~~~~~~~~~~----~~~~~--~-~~~~~~~~--~-~--~--~~~~~~~~sPavr~~-----------~~s~~~~~~~~-- 205 (455)
++.......+ .+.+. . +.+.+... . . + .....+.++|++|++ .++|+.++..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 361 (633)
T PRK11854 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED 361 (633)
T ss_pred CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence 4321100000 00000 0 00000000 0 0 0 011134578999864 35666554221
Q ss_pred -----CC----CC-CCC--CCC-CC------CCCCC--CCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHH
Q 012864 206 -----PT----SP-PSK--PMA-SE------PQLPP--KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM 264 (455)
Q Consensus 206 -----~~----~~-~~~--~~~-~~------~~~~~--~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~ 264 (455)
.. .+ .+. +.+ .. +..+. ...++++||+++||.||++|++||+++|||+++.++|+|+|+
T Consensus 362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~ 441 (633)
T PRK11854 362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441 (633)
T ss_pred HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence 00 00 000 000 00 00000 112356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hcCcccchHHHHHHHHHHHhhcCCcccEEEe--CCeEEEcCCccEEEEEecCCCeEEEEEccCCCCC
Q 012864 265 KLRSDYKDAFLE-KHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMN 341 (455)
Q Consensus 265 ~~r~~~~~~~~~-~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~--~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~s 341 (455)
++|+++++.... +.|+|+|+++||+||+++||++||+||++|+ ++++++++++||||||++++||++|||+|+++++
T Consensus 442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~s 521 (633)
T PRK11854 442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKG 521 (633)
T ss_pred HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCC
Confidence 999988754322 3589999999999999999999999999996 4579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEE
Q 012864 342 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIA 421 (455)
Q Consensus 342 l~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~ls 421 (455)
|.+|+++++++++++++|+|.++|++||||||||+|++|+++|+|||||||+|||++|++.++|++.+|.+++|++|+||
T Consensus 522 l~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~ls 601 (633)
T PRK11854 522 IIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLS 601 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 422 LTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 422 lt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
||||||++||+++|+||++|+++||+|..|||
T Consensus 602 lt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 602 LSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999998775
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=4.1e-71 Score=576.99 Aligned_cols=361 Identities=40% Similarity=0.663 Sum_probs=295.9
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|+.+++||++|++|+||+|.+|+|++||.|++||+|++||||| +++++|+.|++|++|+.|+..+
T Consensus 1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 4578999999999999999999999999999999999999999 7999999999999999998655
Q ss_pred C-ccccccc-cccc-CCCCC--CCC--CCC-CC---C-CCC-CCcccCccccCC-----------CCCCCCCCCCCC---
Q 012864 154 E-GVAQAAS-AEKA-AAQPP--PAE--EKP-SA---E-KQT-PESEAAPAVKDK-----------TPSEPPPTAKKP--- 206 (455)
Q Consensus 154 ~-~~~~~~~-~~~~-~~~~~--~~~--~~~-~~---~-~~~-~~~~~sPavr~~-----------~~s~~~~~~~~~--- 206 (455)
+ +.+.... .... ...+. ..+ ... .. . ... ....++|++|++ .++|+.++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~ 160 (411)
T PRK11856 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE 160 (411)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence 4 2111100 0000 00000 000 000 00 0 001 112468988864 456665543211
Q ss_pred ----C--C-CCCCCCCCCCCC-CCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhc
Q 012864 207 ----T--S-PPSKPMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKH 278 (455)
Q Consensus 207 ----~--~-~~~~~~~~~~~~-~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~ 278 (455)
. . +.+.+.++.... .....++.+|++++||.||++|++||+++|||+++.++|+|+|+++|+++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~----- 235 (411)
T PRK11856 161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI----- 235 (411)
T ss_pred HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence 0 0 000000000000 01123567899999999999999999999999999999999999999998642
Q ss_pred CcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhc
Q 012864 279 GVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKAND 358 (455)
Q Consensus 279 g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~ 358 (455)
+.++||+++++||+++||++||+||++|++++++++++||||+||++++||++|||++++++++.+|+++++++++++++
T Consensus 236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~ 315 (411)
T PRK11856 236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKARE 315 (411)
T ss_pred ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHH
Q 012864 359 GSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFL 438 (455)
Q Consensus 359 g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl 438 (455)
|+|.++|++||||||||+||+|..+++||||+||+|||++|+++++|++.+|+++++.+|+|||+||||++||+++++||
T Consensus 316 ~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl 395 (411)
T PRK11856 316 GKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFL 395 (411)
T ss_pred CCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhhhhcc
Q 012864 439 RRIKDIVEDPRRLLLD 454 (455)
Q Consensus 439 ~~lk~~LE~P~~lll~ 454 (455)
++|+++||||+.||++
T Consensus 396 ~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 396 KALKELLENPALLLLE 411 (411)
T ss_pred HHHHHHHhCHHHHhcC
Confidence 9999999999998874
No 15
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.6e-71 Score=596.63 Aligned_cols=364 Identities=39% Similarity=0.598 Sum_probs=295.6
Q ss_pred CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
+.+.+|+||+||+ |+||+|.+|+|++||.|++||+|++||||| +++++||.|++|++|+.|+..
T Consensus 117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 3468999999999 999999999999999999999999999999 889999999999999999765
Q ss_pred CCcccc---cccccc--c--C-CCCCCCCC--CCCC-CC-C--CCCc-ccCccccCC-----------CCCCCCCCCCC-
Q 012864 153 GEGVAQ---AASAEK--A--A-AQPPPAEE--KPSA-EK-Q--TPES-EAAPAVKDK-----------TPSEPPPTAKK- 205 (455)
Q Consensus 153 ~~~~~~---~~~~~~--~--~-~~~~~~~~--~~~~-~~-~--~~~~-~~sPavr~~-----------~~s~~~~~~~~- 205 (455)
++.... ..+... . + ....+... .... .. . .... .++|++|++ .++|+.++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 275 (547)
T PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE 275 (547)
T ss_pred CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence 322100 000000 0 0 00000000 0000 00 0 1122 578998864 45666554221
Q ss_pred ------CC----CCCCC--CCCC----C---CCCCC----CCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechH
Q 012864 206 ------PT----SPPSK--PMAS----E---PQLPP----KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 262 (455)
Q Consensus 206 ------~~----~~~~~--~~~~----~---~~~~~----~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~ 262 (455)
.. .+++. +.+. . +.... ...++.+||+++||.||++|+.|++++||||++.++|+|+
T Consensus 276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~ 355 (547)
T PRK11855 276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355 (547)
T ss_pred HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence 00 00000 0000 0 00000 0124578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEe--CCeEEEcCCccEEEEEecCCCeEEEEEccCCCC
Q 012864 263 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERM 340 (455)
Q Consensus 263 l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~--~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~ 340 (455)
|+++|+++++.+. +.|+|+||++||+||+++||++||+||++|+ ++.++++++||||+||++++||++|||+|++++
T Consensus 356 l~~~r~~~~~~~~-~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~ 434 (547)
T PRK11855 356 LEALRKQLKKEAE-KAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKK 434 (547)
T ss_pred HHHHHHHhhhhhh-hcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccC
Confidence 9999999986543 4589999999999999999999999999998 567999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEE
Q 012864 341 NFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYI 420 (455)
Q Consensus 341 sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~l 420 (455)
++.+|+++++++++++++|+|.++|++||||||||+||+|+++|+|||||||+|||++|++.++|++.+|.+..+++|+|
T Consensus 435 sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~l 514 (547)
T PRK11855 435 SLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPL 514 (547)
T ss_pred CHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 421 ALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 421 slt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
||+||||+|||+++|+||++|+++||||+.||+
T Consensus 515 slt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 515 SLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred eEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999998875
No 16
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=3.8e-72 Score=570.06 Aligned_cols=364 Identities=29% Similarity=0.447 Sum_probs=297.8
Q ss_pred CCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCC-CeecCCCEEEEEe
Q 012864 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEG-ETVEPGAKIAVIS 150 (455)
Q Consensus 87 ~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G-~~v~vG~~l~~i~ 150 (455)
.+.+.+|.||.|+++|+||+|++|.+||||.+++||+|||||||| |+++|| ..|+||++||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 588999999999999999999999999999999999999999999 999999 7999999999998
Q ss_pred cCCCcccccc---c---ccc-cCC-C--CCCCC----CCC----CC--CC--C---CCCcccCccccCC-----------
Q 012864 151 KSGEGVAQAA---S---AEK-AAA-Q--PPPAE----EKP----SA--EK--Q---TPESEAAPAVKDK----------- 194 (455)
Q Consensus 151 ~~~~~~~~~~---~---~~~-~~~-~--~~~~~----~~~----~~--~~--~---~~~~~~sPavr~~----------- 194 (455)
+.+++.++.+ . +.. .+. . +++++ +++ ++ .. + +.++.++|.++.+
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 8776543221 1 000 000 0 00000 000 00 00 0 1134456666532
Q ss_pred CCCCCCCCCCC-------C----C---CCCCCCCCCCC--CCCCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeee
Q 012864 195 TPSEPPPTAKK-------P----T---SPPSKPMASEP--QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEV 258 (455)
Q Consensus 195 ~~s~~~~~~~~-------~----~---~~~~~~~~~~~--~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~ev 258 (455)
.++||.++..+ + + ++++.+.+..+ ...+...++.+|++.||+.|++||.+|+++|||+|+..++
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~ 274 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDV 274 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeee
Confidence 45666655211 0 0 11110000011 0112234789999999999999999999999999999999
Q ss_pred echHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeC-CeEEEcCCccEEEEEecCCCeEEEEEccC
Q 012864 259 DMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG-DDIIYRDYIDISFAVGTKKGLVVPVIRNS 337 (455)
Q Consensus 259 Dvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~-~~i~~~~~vnIgiAV~~~~GL~vPvI~~a 337 (455)
+++.|+++|+.++ + ++.+.++|+++|++||++.||+++|++|++|.+ +-|.++..|||++||++++||++|+|+|+
T Consensus 275 ~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~na 351 (470)
T KOG0557|consen 275 NLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQNA 351 (470)
T ss_pred ehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhhc
Confidence 9999999999998 2 467899999999999999999999999999987 67889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEE---eCCeEeE
Q 012864 338 ERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV---VGGNVVP 414 (455)
Q Consensus 338 ~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv---~~g~i~~ 414 (455)
+.+.+.+|++++.+|+.++|.|+|.++|++|||||||||||||++.|+.||||||.|||++|..++..|. .++.+..
T Consensus 352 ~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~ 431 (470)
T KOG0557|consen 352 DAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSV 431 (470)
T ss_pred ccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999998877653 2467888
Q ss_pred EcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 415 RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 415 r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
...|++||++|||++||+.++|||..|+++||||+.|||
T Consensus 432 ~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 432 INAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred eeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 999999999999999999999999999999999999886
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-66 Score=528.96 Aligned_cols=228 Identities=36% Similarity=0.627 Sum_probs=219.7
Q ss_pred cceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEE
Q 012864 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 305 (455)
Q Consensus 226 ~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~ 305 (455)
++.+||+++||.||++|++||+++||||++.|||+|+|+++|+++++.+.++.|+|+||++||+||+++||++||.+|++
T Consensus 118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~ 197 (347)
T PRK14843 118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS 197 (347)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence 45689999999999999999999999999999999999999999987665566899999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCC
Q 012864 306 IDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 383 (455)
Q Consensus 306 l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~ 383 (455)
|++ +.++++++|||||||++++||+||||+|+|++|+.||++++++|++++|+|+|+++||+||||||||+|+||+++
T Consensus 198 ~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~ 277 (347)
T PRK14843 198 LTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQS 277 (347)
T ss_pred EecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccc
Confidence 984 469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 384 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 384 ~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
|+|||||||+||||+|+++++|+++||+++++++|+||||||||+|||++||+||++|+++||+|+.||+
T Consensus 278 ~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 278 FGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred eeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
No 18
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=5.2e-66 Score=499.65 Aligned_cols=228 Identities=46% Similarity=0.757 Sum_probs=204.7
Q ss_pred CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304 (455)
Q Consensus 225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa 304 (455)
.++++|++++||+||++|++|++++||+|++.|||+|+|+++|+++++... ..+.++|+++|++||+++||++||++|+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~-~~~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGE-EPGGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHH-HTTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHH-hhccCCChhHeeeehHhhhhHHHHHhcc
Confidence 467899999999999999999999999999999999999999999987653 3455999999999999999999999999
Q ss_pred EEeCCe-EEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCC
Q 012864 305 VIDGDD-IIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 383 (455)
Q Consensus 305 ~l~~~~-i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~ 383 (455)
+|++++ +++++++||||||++++||++|||+|++++|+.||+++++++++++++|+|+++|++||||||||+|++|+++
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 999887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 384 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 384 ~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
|+|||||||+|||++|+++++|++.+|+++++++|+||||||||++||++||+||++|+++||||+.|||
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886
No 19
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=8.7e-66 Score=515.64 Aligned_cols=228 Identities=39% Similarity=0.628 Sum_probs=219.6
Q ss_pred cceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEE
Q 012864 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 305 (455)
Q Consensus 226 ~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~ 305 (455)
++.+||+++||.|+++|++|++++||++++.|||+|+|+++|+++++.+.+++|+|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 45689999999999999999999999999999999999999999997765567999999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCC
Q 012864 306 IDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 383 (455)
Q Consensus 306 l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~ 383 (455)
|++ ++++++++|||||||++++||+||||+|+|++|+.||++++++|++++|+|+|+++||+||||||||+|++|+.+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 985 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 384 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 384 ~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
|+|||||||+||||+|++.++|++.||+++++++|+||||||||+|||++||+||++|+++||+|+.|++
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred eecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997653
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.7e-53 Score=461.77 Aligned_cols=221 Identities=25% Similarity=0.386 Sum_probs=210.9
Q ss_pred CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304 (455)
Q Consensus 225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa 304 (455)
..+.+||++++++||++|..|+. +|++|...+||++.|+++|..+|+.+.+.+|.|+||||+++||+++||++||.+|+
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa 192 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR 192 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence 34678999999999999999987 89999999999999999999999998888999999999999999999999999999
Q ss_pred EEeC--C--eEEEcCCccEEEEEecC-----CCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEec
Q 012864 305 VIDG--D--DIIYRDYIDISFAVGTK-----KGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISN 375 (455)
Q Consensus 305 ~l~~--~--~i~~~~~vnIgiAV~~~-----~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISN 375 (455)
+|++ + .++++++|||||||+++ +||+||+||+|++++|.||.+++++|++|||+|+|+++|++||||||||
T Consensus 193 sy~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN 272 (1228)
T PRK12270 193 HYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTN 272 (1228)
T ss_pred eeeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEec
Confidence 9973 3 39999999999999998 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCCeEEEEecceeeEEEEeC------CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 376 GGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 376 lG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~------g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
+|++|+.+|+||||+||+||||+|++...|++.+ +++.++++|+||+|||||||||+++++||+.|+++||
T Consensus 273 ~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 273 PGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred CCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999998777743 5899999999999999999999999999999999999
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.79 E-value=6.3e-18 Score=162.38 Aligned_cols=199 Identities=12% Similarity=0.177 Sum_probs=161.9
Q ss_pred eeCchH-HHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEe
Q 012864 229 VPMTRL-RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID 307 (455)
Q Consensus 229 vpls~~-rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~ 307 (455)
+.+..+ ||..-+....... |.+.++.++|+|+|++..++. ++++++.+++|+++|++++|+|+.++.
T Consensus 11 IDl~~W~RkehF~~f~~~~~--~~fsiT~~iDiT~l~~~~K~~----------~~~fy~~~ly~v~kavN~~~eFR~r~~ 78 (219)
T PRK13757 11 VDISQWHRKEHFEAFQSVAQ--CTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMK 78 (219)
T ss_pred EccccCccHHHHHHHhcCCC--CceEEEEEEEHHHHHHHHHHc----------CCChHHHHHHHHHHHHhcCHhHheEEE
Confidence 444444 4444444443222 459999999999998764432 678999999999999999999999999
Q ss_pred CCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcC-CCCccccCCCcEEEecCCCCCCCCe-e
Q 012864 308 GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISIDEMAGGTFTISNGGVYGSLLS-T 385 (455)
Q Consensus 308 ~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g-~l~~~dl~ggTftISNlG~~G~~~~-~ 385 (455)
+++++.++.++.+.+|..+++-..-.+.-...-++.++.+...+.+++++++ .+.+++.....|.||.+.|+.-+.+ .
T Consensus 79 ~~~v~~~D~i~ps~Ti~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~ 158 (219)
T PRK13757 79 DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDL 158 (219)
T ss_pred CCeEEEEeEEeeeEEEEeCCCceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCcccccc
Confidence 9999999999999999988877778888889999999999988889999876 4655555668999999999877665 4
Q ss_pred eecCCCC--eEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 386 PIINPPQ--SAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 386 Pii~~Pq--~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
++-+... +-+++.|++.++ +| |-+||||+.+.|.++||.++++|++.|+++|++
T Consensus 159 ~~~~~~~~~~P~it~GKy~~~----~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 159 NVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred ccccCCCCcCcEEEeeceEEE----CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 4544442 347899999875 77 678999999999999999999999999999976
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.79 E-value=1e-17 Score=159.77 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=136.6
Q ss_pred CccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCC-eEEEcCCccEEEEEecC
Q 012864 248 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD-DIIYRDYIDISFAVGTK 326 (455)
Q Consensus 248 ~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~-~i~~~~~vnIgiAV~~~ 326 (455)
.-|.++++.++|+|+|++..|+. +++++..+++++++|++++|+|+.+++++ ++++++.++.+.+|..+
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~~----------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~ 93 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKEK----------GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHK 93 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHHT----------T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEET
T ss_pred CCceEecceeEEhHHHHHHHHHc----------CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeC
Confidence 45899999999999998765442 67999999999999999999999999887 99999999999999877
Q ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcC-CCCccc-cCCCcEEEecCCCCCCCCe-eeecCCCC--eEEEEecce
Q 012864 327 KGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISIDE-MAGGTFTISNGGVYGSLLS-TPIINPPQ--SAILGMHSI 401 (455)
Q Consensus 327 ~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g-~l~~~d-l~ggTftISNlG~~G~~~~-~Pii~~Pq--~aIL~vG~i 401 (455)
++-..-.+.-....++.++.++..+.++++++. .+.+++ .....|.+|++.|+.-+.+ .|+-+.+. .-++++|++
T Consensus 94 ~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~ 173 (206)
T PF00302_consen 94 DDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKY 173 (206)
T ss_dssp TTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--
T ss_pred CCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeee
Confidence 654666666678889999999999999998764 455543 4567899999999988776 44444432 458899999
Q ss_pred eeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHH
Q 012864 402 VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIK 442 (455)
Q Consensus 402 ~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk 442 (455)
.++ +| |-+|||++.+.|.++||.++++|+++|+
T Consensus 174 ~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 174 FEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred EeE----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 986 78 6789999999999999999999999986
No 23
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.53 E-value=1.6e-13 Score=145.37 Aligned_cols=66 Identities=39% Similarity=0.689 Sum_probs=61.5
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCC-eecCCCEEEEEecCC
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGE-TVEPGAKIAVISKSG 153 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~-~v~vG~~l~~i~~~~ 153 (455)
.++|+||++|++|+||+|.+|+|++||.|++||+|++||||| |++++|+ .|++|++|++|++++
T Consensus 2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 469999999999999999999999999999999999999999 8999995 799999999998765
Q ss_pred Cc
Q 012864 154 EG 155 (455)
Q Consensus 154 ~~ 155 (455)
+.
T Consensus 82 ~~ 83 (464)
T PRK11892 82 ES 83 (464)
T ss_pred Cc
Confidence 43
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.49 E-value=3.8e-14 Score=113.80 Aligned_cols=59 Identities=41% Similarity=0.784 Sum_probs=57.0
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
.+|++|.+|..++++++.+|+|++||.|++||+||+||||| +++++||.|.+|++|++|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999 899999999999999986
No 25
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.48 E-value=1.6e-12 Score=121.26 Aligned_cols=186 Identities=10% Similarity=0.120 Sum_probs=146.4
Q ss_pred CccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCC
Q 012864 248 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 327 (455)
Q Consensus 248 ~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~ 327 (455)
..||+-.+.+.|+|.+....++. +++++.++++|+.+++.+|++|+-++.+|.+.+++.++..++|..++
T Consensus 27 ~~p~y~i~~~LDvtn~~~~vk~~----------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~ 96 (219)
T COG4845 27 QYPHYDINLQLDVTNFYGYVKEN----------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGE 96 (219)
T ss_pred ccceEeeeeeeehhHHHHHHHHc----------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCC
Confidence 46999999999999987654432 78999999999999999999999999999999999999999999998
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCC-CccccC-CCcEEEecCCCCCCCCe-eeecCC-CC-eEEEEeccee
Q 012864 328 GLVVPVIRNSERMNFAEIEKEISTLAKKANDGSI-SIDEMA-GGTFTISNGGVYGSLLS-TPIINP-PQ-SAILGMHSIV 402 (455)
Q Consensus 328 GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l-~~~dl~-ggTftISNlG~~G~~~~-~Pii~~-Pq-~aIL~vG~i~ 402 (455)
+-..-++.-..+.++.++++....-++++++|.- .++|-. .--..+||+.|+.-+.. .++-+- -+ .-|+..|+-.
T Consensus 97 ~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~ 176 (219)
T COG4845 97 TETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFY 176 (219)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeeccee
Confidence 8888888888999999999998888888888754 232322 23355677777543321 111100 00 1134777766
Q ss_pred eEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhh
Q 012864 403 NRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 451 (455)
Q Consensus 403 ~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~l 451 (455)
.+ ||.+ +|||++.++|..+||.+++.|++.|+.++++|-.+
T Consensus 177 ~~----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 177 EE----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred cc----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 64 7854 59999999999999999999999999999998653
No 26
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.43 E-value=2.9e-13 Score=137.55 Aligned_cols=64 Identities=39% Similarity=0.619 Sum_probs=60.9
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
..+|+||+||++|+||+|.+|+|++||+|++||+|++||+|| +++++||.|.+|++|+.|+...
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999999999 8999999999999999997643
No 27
>PRK06748 hypothetical protein; Validated
Probab=99.34 E-value=2.4e-12 Score=105.40 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=45.7
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc-cc---------------eeccCCCeecCCCEEEEEec
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET-DK---------------LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet-dK---------------i~~~~G~~v~vG~~l~~i~~ 151 (455)
-|+|.+|+|++||.|++||+|++||| || |++++||.|++|++|+.|++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 48999999999999999999999999 98 89999999999999999964
No 28
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.18 E-value=4.2e-11 Score=130.80 Aligned_cols=65 Identities=43% Similarity=0.773 Sum_probs=61.0
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|.++|+||+||++|+||+|.+|+|++||.|++||+||+||||| |++++||.|++|++|+.|+..+
T Consensus 1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~~ 80 (590)
T TIGR02927 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEAG 80 (590)
T ss_pred CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeecc
Confidence 3468999999999999999999999999999999999999999 8999999999999999997643
No 29
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.13 E-value=8.4e-11 Score=129.58 Aligned_cols=62 Identities=29% Similarity=0.510 Sum_probs=59.0
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
|..+|+||+|| |+||+|.+|+|++||.|++||+|++||||| |++++||.|++|++|+.|+.+
T Consensus 1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 34689999999 999999999999999999999999999999 899999999999999999876
No 30
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.05 E-value=4.1e-10 Score=89.60 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=44.8
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
-|+|.+|+|++||+|++||+|++||+|| +++++||.|+.|++|+.|+
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 5899999999999999999999999999 7899999999999999984
No 31
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.97 E-value=1.4e-09 Score=118.19 Aligned_cols=65 Identities=37% Similarity=0.612 Sum_probs=60.0
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|..+++||++|+ |.||+|.+|+|++||.|++||+||+||||| +++++|+.|.+|++|+.|+..+
T Consensus 1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 346899999999 999999999999999999999999999999 7899999999999999997543
Q ss_pred C
Q 012864 154 E 154 (455)
Q Consensus 154 ~ 154 (455)
.
T Consensus 80 ~ 80 (547)
T PRK11855 80 A 80 (547)
T ss_pred c
Confidence 3
No 32
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.92 E-value=2.6e-09 Score=84.89 Aligned_cols=57 Identities=35% Similarity=0.617 Sum_probs=53.9
Q ss_pred EEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 93 i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
+.+|++|.++.++.+.+|++++||+|++||+|+++|++| +++++|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 678999999999999999999999999999999999999 788999999999999875
No 33
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.91 E-value=2.9e-09 Score=84.34 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=44.8
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
-|+|.+|++++||+|++||+|++||++| +++++||.|..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 4799999999999999999999999999 8899999999999999985
No 34
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.85 E-value=4.6e-09 Score=114.00 Aligned_cols=61 Identities=31% Similarity=0.601 Sum_probs=57.7
Q ss_pred EEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 92 ~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+|+||+||+. .+|+|.+|+|++||.|++||+|++||||| +++++||.|++|++|+.|+..+
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~ 77 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGA 77 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEeccc
Confidence 6899999987 99999999999999999999999999999 8999999999999999997543
No 35
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.58 E-value=1.1e-07 Score=84.63 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=44.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
-.|+|.+|++++||.|++||+|+++|++| |++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 35799999999999999999999999999 899999999999999987
No 36
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.54 E-value=1.5e-07 Score=85.99 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=44.0
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
-|+|.+|++++||.|++||.|+++|++| +++++||.|..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 4689999999999999999999999999 789999999999999987
No 37
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.51 E-value=4.6e-07 Score=69.48 Aligned_cols=58 Identities=45% Similarity=0.752 Sum_probs=54.1
Q ss_pred EEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 92 ~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
++.+|+++....+|.+.+|++++|+.|..||+|+++|+.| .++.+|+.+..|++|+.|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999998 678899999999999874
No 38
>PRK07051 hypothetical protein; Validated
Probab=98.48 E-value=2.8e-07 Score=75.09 Aligned_cols=55 Identities=31% Similarity=0.465 Sum_probs=48.0
Q ss_pred eEEEEccCCCCCCceEEEEE-------EeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEE
Q 012864 90 LVDAVVPFMGESITDGTLAK-------FLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIA 147 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~-------w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~ 147 (455)
..++..|.. |++.+ |++++||.|++||+|+++|+|| +++++|+.|..|++|+
T Consensus 3 ~~~~~ap~~------g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~ 76 (80)
T PRK07051 3 QHEIVSPLP------GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLA 76 (80)
T ss_pred ccEEeCCCc------eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEE
Confidence 456666654 45666 9999999999999999999999 8899999999999999
Q ss_pred EEe
Q 012864 148 VIS 150 (455)
Q Consensus 148 ~i~ 150 (455)
.|+
T Consensus 77 ~i~ 79 (80)
T PRK07051 77 RIE 79 (80)
T ss_pred EEe
Confidence 985
No 39
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.48 E-value=2e-07 Score=91.10 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=42.9
Q ss_pred EEEEE-------EeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 105 GTLAK-------FLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 105 ~~i~~-------w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
|++.+ |+|++||+|++||+|++||+|| |++++||.|.+|++|+.|+
T Consensus 206 Gtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 206 GTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 56666 9999999999999999999999 7899999999999999985
No 40
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=98.45 E-value=2.8e-07 Score=83.09 Aligned_cols=47 Identities=38% Similarity=0.537 Sum_probs=45.0
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
=|++.+.+|++||+|++||.||.||.-| |++++||.|..|++|+.|+
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 4789999999999999999999999999 9999999999999999985
No 41
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.42 E-value=5.4e-07 Score=69.41 Aligned_cols=47 Identities=43% Similarity=0.714 Sum_probs=43.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
-+|.|.+|++++||.|++||+|+++|++| ++++.|+.|+.|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 46899999999999999999999999988 678899999999999875
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.34 E-value=6.9e-07 Score=97.62 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=45.8
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEec
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~ 151 (455)
-|+|.+|+|++||.|++||+|++||+|| +++++||.|.+|++|+.|+.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 4899999999999999999999999999 89999999999999999964
No 43
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.32 E-value=8.6e-07 Score=81.34 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=39.7
Q ss_pred EeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 110 FLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
|+|++||.|++||.||.||++| |+++.||.|..|++|+.|+
T Consensus 101 ~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 101 PFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 9999999999999999999999 8999999999999999884
No 44
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.25 E-value=1.5e-06 Score=79.64 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=39.6
Q ss_pred EeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 110 FLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
|+|++||.|++||+||.||++| |+++.|+.|..|++|+.|+
T Consensus 100 ~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 100 PFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred cccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 9999999999999999999999 8999999999999999884
No 45
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.16 E-value=2.4e-06 Score=100.43 Aligned_cols=47 Identities=34% Similarity=0.631 Sum_probs=45.1
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
.|+|.+|+|++||+|++||+|++||||| +++++||.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4899999999999999999999999999 8999999999999999985
No 46
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.00 E-value=5.3e-06 Score=90.80 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=40.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEE
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKI 146 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l 146 (455)
-|+|.+|+|++||+|++||+|++||++| |++++||.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 4789999999999999999999999999 899999999999875
No 47
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.96 E-value=9.6e-06 Score=94.80 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=44.9
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
.|+|.+|+|++||+|++||+|++||++| |++++||.|.+|++|+.|+
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 4889999999999999999999999999 8999999999999999984
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.93 E-value=1.4e-05 Score=87.70 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=44.1
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
.|+|.+|+|++||.|++||+|+++|++| +++++||.|..|++|+.|
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 4689999999999999999999999999 899999999999999987
No 49
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.69 E-value=5.9e-05 Score=82.92 Aligned_cols=47 Identities=32% Similarity=0.580 Sum_probs=44.8
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
.|+|.+|+|++||+|++||+|+++|++| +++++||.|..|++|+.|+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 4689999999999999999999999999 8999999999999999985
No 50
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.48 E-value=0.00015 Score=85.13 Aligned_cols=46 Identities=33% Similarity=0.611 Sum_probs=44.6
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
|+|.+|+|++||.|++||+|+++|++| +++++|+.|..|++|+.|+
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 889999999999999999999999999 8999999999999999985
No 51
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.36 E-value=0.00018 Score=53.40 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=26.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+|+|++||.|++||+|++++++.
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 47899999999999999999999999875
No 52
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.88 E-value=0.0013 Score=70.53 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=44.7
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
-|+|+...|++|++|++||+|+.+|.-| +.+++||.|.+|++|+.|+
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 3789999999999999999999999999 8899999999999999985
No 53
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.81 E-value=0.0092 Score=46.95 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=25.1
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.+|++++||.|+.||+|+++|
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 78999999999999999999999997
No 54
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=95.71 E-value=0.02 Score=58.24 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=26.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence 67899999999999999999999999853
No 55
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=95.60 E-value=0.011 Score=65.78 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=43.7
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
|+|++.+|++||.|++||+|+.+|.-| ++|+.||.|.-|+.|..++
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 679999999999999999999999999 8999999999999998875
No 56
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=95.34 E-value=0.014 Score=48.98 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=30.4
Q ss_pred eEEEEccCCCCCCceEEEEE-EeecCCCeeecCCcEEEEEccc
Q 012864 90 LVDAVVPFMGESITDGTLAK-FLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~-w~v~~Gd~V~~gd~l~evetdK 131 (455)
...+-|-+.+..+ =|+|.. |++++||.|++||+|++|||+|
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 4455555544432 345555 7888899999999999999999
No 57
>PRK06748 hypothetical protein; Validated
Probab=95.24 E-value=0.024 Score=46.71 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=27.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|+|.++++++||.|..||+|+.+|.|-
T Consensus 49 ~~G~v~~i~v~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 49 ISGYIESLEVVEGQAIADQKLLITVRDDL 77 (83)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence 68999999999999999999999999874
No 58
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=95.20 E-value=0.037 Score=55.34 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=25.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
.+|.|.++++++||.|++||+|++++++
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 4589999999999999999999999864
No 59
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.02 E-value=0.023 Score=66.65 Aligned_cols=52 Identities=35% Similarity=0.631 Sum_probs=48.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc--------------eeccCCCeecCCCEEEEEecCCC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK--------------i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
+-|++++|+|+.||+|++||+-+|||.-| .+.+||+.+..|++||.++-++.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i~~~G~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLIKQEGDAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEecCCCCccCccceeEEeecCCh
Confidence 57899999999999999999999999999 77899999999999999986653
No 60
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=94.53 E-value=0.036 Score=59.13 Aligned_cols=46 Identities=30% Similarity=0.471 Sum_probs=42.8
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
|.|.+.+||+||.|++||.|+.+|.-| +.+++|+.|.-|++|..++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 478999999999999999999999999 8999999999999998764
No 61
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=94.07 E-value=0.11 Score=54.80 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred ceEEEEEEe-ecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFL-KQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~-v~~Gd~V~~gd~l~evet 129 (455)
-.|.|.+.+ +++||.|++||+|+++++
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 468899998 999999999999999984
No 62
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=93.95 E-value=1.5 Score=46.80 Aligned_cols=176 Identities=18% Similarity=0.247 Sum_probs=92.1
Q ss_pred EEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcC--Cc-------ccEE--EeCCeEEEcC-----C
Q 012864 253 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQ--PV-------VNAV--IDGDDIIYRD-----Y 316 (455)
Q Consensus 253 ~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~--P~-------lNa~--l~~~~i~~~~-----~ 316 (455)
+....++-+.+.++++..++ + +.|++.++.-+++.||.+. |. ++.. ++..+++..+ .
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~-----~--~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~ 323 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRK-----H--GTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDE 323 (480)
T ss_pred EEEEEECHHHHHHHHHHHHH-----c--CCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCcccccccc
Confidence 34556777777776665542 3 6799999999999999962 21 2222 1222222111 1
Q ss_pred ccEEEEEecCCC--eEEEEEcc-CCCCCHHHHHHHHHHHHHHH-hcCC------------C-Cccc-----------cCC
Q 012864 317 IDISFAVGTKKG--LVVPVIRN-SERMNFAEIEKEISTLAKKA-NDGS------------I-SIDE-----------MAG 368 (455)
Q Consensus 317 vnIgiAV~~~~G--L~vPvI~~-a~~~sl~eIa~el~~l~~~a-~~g~------------l-~~~d-----------l~g 368 (455)
...|..|...+- .+.++-.+ ....++-++++++++-+.+. ..+. + ...| ..+
T Consensus 324 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~r~ 403 (480)
T PF07247_consen 324 YSYGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKPRR 403 (480)
T ss_pred ccceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCCCC
Confidence 234444433221 11222111 12245778888877666543 2221 1 1111 237
Q ss_pred CcEEEecCCCCCC-CCe-----eeecCCCC---eEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHH-HHHH
Q 012864 369 GTFTISNGGVYGS-LLS-----TPIINPPQ---SAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREA-VFFL 438 (455)
Q Consensus 369 gTftISNlG~~G~-~~~-----~Pii~~Pq---~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~a-a~Fl 438 (455)
+||.|||+|.+.. ... .-+...++ .+.+.++-+.. .+|. |++++++=.-+++-.+. -.|+
T Consensus 404 ~t~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~----~~G~------L~i~~s~~~~~~~~~~~~~~~~ 473 (480)
T PF07247_consen 404 STFEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIST----KGGG------LNISISWQEGIVEDEEMEDEFM 473 (480)
T ss_pred CcEEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEc----CCCc------eEEEEEEeCCcccccchHHHHH
Confidence 8999999999873 111 11111111 11122222211 1342 77888888878876666 4899
Q ss_pred HHHHHHh
Q 012864 439 RRIKDIV 445 (455)
Q Consensus 439 ~~lk~~L 445 (455)
+.|++.|
T Consensus 474 ~~~~~~~ 480 (480)
T PF07247_consen 474 ELFKQNL 480 (480)
T ss_pred HHHHhhC
Confidence 9888765
No 63
>PRK07051 hypothetical protein; Validated
Probab=93.84 E-value=0.07 Score=43.26 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=24.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 68999999999999999999999986
No 64
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=93.69 E-value=0.075 Score=58.36 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=44.0
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
-|+|++..|++|+.|++||+||.+-.-| +++..|+.+.-|+.++.|+
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 3789999999999999999999999988 8999999999999999886
No 65
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=93.64 E-value=0.12 Score=53.88 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=28.8
Q ss_pred cCCCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 96 PFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 96 P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-+|+.. ..|.|.++++++||.|++||+|+++++.
T Consensus 64 ~~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 64 AEVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEecc-CcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 345554 5689999999999999999999999875
No 66
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=93.05 E-value=0.17 Score=53.08 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=25.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.|.|.+.++++||.|++||+|++++..
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 4589999999999999999999999875
No 67
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.79 E-value=0.085 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=25.2
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
|.|.+++|++||.|++||+|++++.+.
T Consensus 25 G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 25 DRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred cEEEEEEccCCCEecCCcEEEEecCcH
Confidence 999999999999999999999998764
No 68
>PRK00624 glycine cleavage system protein H; Provisional
Probab=92.65 E-value=0.059 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=21.1
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
...++|. ++|++|++||+|++|||+|
T Consensus 34 i~~v~lp-~~G~~V~~g~~i~~IEs~K 59 (114)
T PRK00624 34 ILHIDLP-SVGSFCKEGEVLVILESSK 59 (114)
T ss_pred EEEEECC-CCCCEEeCCCEEEEEEecc
Confidence 3444443 6799999999999999999
No 69
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.64 E-value=0.21 Score=52.09 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=26.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.|.|.+.++++||.|++||+|++++..
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 5789999999999999999999999975
No 70
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=92.56 E-value=0.094 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=21.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+|.| +|+|++||+|++||+|++++++.
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 46999 99999999999999999999988
No 71
>PRK12784 hypothetical protein; Provisional
Probab=92.43 E-value=0.38 Score=38.89 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=45.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc----------------eeccCCCeecCCCEEEEEecC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK----------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK----------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
-.|.|-+.++.+++.|-+=|+|+-|++.. +-+++||.+..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 46899999999999999999999999976 788999999999999999754
No 72
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=91.98 E-value=0.13 Score=52.06 Aligned_cols=29 Identities=10% Similarity=0.273 Sum_probs=26.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+++|++||.|++||+|+++++..
T Consensus 49 ~~G~V~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 49 VSGSVIEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred CceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence 57999999999999999999999998765
No 73
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=91.87 E-value=0.16 Score=40.55 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=23.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+|.|.++++++||.|+.||+|+.+
T Consensus 50 ~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 50 VSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCEEEEEEEECCCCEECCCCEEEEC
Confidence 5799999999999999999999986
No 74
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=91.86 E-value=0.15 Score=44.18 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=21.2
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
...++| .++||+|++||+|++|||+|
T Consensus 32 i~~v~l-p~~G~~V~~g~~i~~IEs~K 57 (110)
T TIGR03077 32 ILHIDL-PSVGSSCKEGEVLVILESSK 57 (110)
T ss_pred EEEEEC-CCCCCEEcCCCEEEEEEecc
Confidence 444444 36799999999999999999
No 75
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=91.86 E-value=0.19 Score=39.70 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=24.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
..|+|.++++++||.|+.|++|++++
T Consensus 46 ~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 46 VAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 67999999999999999999999874
No 76
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=91.74 E-value=0.16 Score=40.94 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=17.6
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
+.++++.||.|++||+||+|=++.
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEESS
T ss_pred eEecCcCcCEECCCCeEEEEEcCC
Confidence 567888888888888888876654
No 77
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=91.48 E-value=0.55 Score=48.37 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=29.9
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
.+.+.+|.- ..|+|.+.+||+||+|+.|+.|+.|++.
T Consensus 113 K~tv~V~sP----~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 113 KTTVEVPSP----ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred ceeeeccCC----CcceeeEEecCCCCcccCCceeEEecCC
Confidence 444555532 5689999999999999999999999875
No 78
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=91.39 E-value=0.17 Score=45.56 Aligned_cols=27 Identities=41% Similarity=0.709 Sum_probs=25.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
..|+|.+.+|++||.|+.||+|+.|+.
T Consensus 114 ~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 114 ADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred CCcEEEEEEecCCCccCCCCEEEEecC
Confidence 789999999999999999999999973
No 79
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.23 E-value=0.35 Score=51.11 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.9
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|.|.++++++||.|++||+|+++.+.
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 5789999999999999999999999764
No 80
>PRK13380 glycine cleavage system protein H; Provisional
Probab=90.56 E-value=0.18 Score=45.74 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=27.2
Q ss_pred EEEEccCCCCCCceEEEEEEee-cCCCeeecCCcEEEEEccc
Q 012864 91 VDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v-~~Gd~V~~gd~l~evetdK 131 (455)
..|-|-+.... .=|+|..+-+ ++|++|++||+++.||+.|
T Consensus 31 ~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K 71 (144)
T PRK13380 31 VTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGK 71 (144)
T ss_pred EEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcc
Confidence 44444444332 2234555544 4899999999999999999
No 81
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=90.56 E-value=0.17 Score=50.06 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=18.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|.|.+.+|++||.|++||+|+++..-
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 5688999999999999998888887643
No 82
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.34 E-value=0.46 Score=42.46 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=24.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+|+|.+|++++||.|+.||+|++|
T Consensus 105 ~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 105 SAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 7899999999999999999999986
No 83
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.64 E-value=0.26 Score=50.25 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=28.3
Q ss_pred CCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 97 FMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 97 ~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.++.. ..|.|.+++|++||.|++||+|++++++.
T Consensus 45 ~v~a~-~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 45 NLGFR-VGGRLASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred Eeecc-cCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 34443 56799999999999999999999998875
No 84
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=89.23 E-value=0.31 Score=51.13 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=26.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.|.|.+++|++||.|++||+|++++++.
T Consensus 68 v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 68 VSGSVTKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence 46899999999999999999999998765
No 85
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=89.08 E-value=0.35 Score=44.45 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=25.1
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
-.+|+|.+|+++.||.|+.||+|++||
T Consensus 130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 130 EVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 368999999999999999999999985
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.91 E-value=0.34 Score=50.42 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=27.1
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+|+|++||.|++||+|++++...
T Consensus 50 ~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 50 EGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred CCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 56999999999999999999999999877
No 87
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=88.90 E-value=0.37 Score=39.80 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=18.9
Q ss_pred EEEeecCCCeeecCCcEEEEEcc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetd 130 (455)
++|++++||.|++||+|++++-+
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEeC
Confidence 45999999999999999999864
No 88
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=88.70 E-value=0.4 Score=43.97 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=24.7
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.+|+++.||.|+.||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 78999999999999999999999985
No 89
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=88.68 E-value=0.37 Score=49.45 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=26.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+.+|++||.|++||+|++++++.
T Consensus 55 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~ 83 (346)
T PRK10476 55 VGGRIVELAVTENQAVKKGDLLFRIDPRP 83 (346)
T ss_pred CceEEEEEEeCCCCEEcCCCEEEEECcHH
Confidence 45899999999999999999999998875
No 90
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=88.35 E-value=4.9 Score=42.31 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=86.3
Q ss_pred EEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCC-----
Q 012864 253 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK----- 327 (455)
Q Consensus 253 ~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~----- 327 (455)
+...++++..+.++.+. .+.|++++++-|++.+|.++ ++.. ++ .....+.+++.|+...
T Consensus 231 ~~~~~~~~~~l~~~a~~----------~g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R~~~~~~ 294 (446)
T TIGR02946 231 FAAQSLPLADVKAVAKA----------FGVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLRPMEDDS 294 (446)
T ss_pred EEeeccCHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeeccccccCC
Confidence 34566776666544221 25799999999999999875 2221 11 2223467777776421
Q ss_pred ------CeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCC-------------Cc--------ccc-----CCCcEEEec
Q 012864 328 ------GLVVPVIRNSERMNFAEIEKEISTLAKKANDGSI-------------SI--------DEM-----AGGTFTISN 375 (455)
Q Consensus 328 ------GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l-------------~~--------~dl-----~ggTftISN 375 (455)
|.+...+. .+..+..+-..++++....+++... -+ .-+ ..-|++|||
T Consensus 295 ~~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SN 373 (446)
T TIGR02946 295 EGGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISN 373 (446)
T ss_pred CCCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeC
Confidence 12222222 1233344444555555555544311 00 001 124789999
Q ss_pred CCCCCCC---------CeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 376 GGVYGSL---------LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 376 lG~~G~~---------~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
++..... ...++.+++.-..|+++-.. .+| .|.+++++|-.++.. ..+|.+.+.+.|+
T Consensus 374 vpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~ 440 (446)
T TIGR02946 374 VPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YNG------QLDFGLLADRDAVPD--PQELADALEAALE 440 (446)
T ss_pred CCCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHH
Confidence 9763321 12222221111122222111 133 377999999988873 7778888887776
Q ss_pred C
Q 012864 447 D 447 (455)
Q Consensus 447 ~ 447 (455)
.
T Consensus 441 ~ 441 (446)
T TIGR02946 441 E 441 (446)
T ss_pred H
Confidence 4
No 91
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=87.87 E-value=0.42 Score=49.51 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.|.|.++++++||.|++||+|++++++-
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~ 96 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQ 96 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence 34899999999999999999999997653
No 92
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=87.79 E-value=0.53 Score=50.52 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.7
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.+|+|.+|++++||.|+.||+|++||.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 37899999999999999999999999864
No 93
>PRK01202 glycine cleavage system protein H; Provisional
Probab=87.55 E-value=0.32 Score=43.17 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.5
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..-++| .++|++|++||++++||++|
T Consensus 39 i~~v~l-p~~G~~v~~g~~~~~IEs~K 64 (127)
T PRK01202 39 IVFVEL-PEVGDEVKAGETFGVVESVK 64 (127)
T ss_pred eeEEEc-CCCCCEecCCCEEEEEEEcc
Confidence 444453 37899999999999999999
No 94
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=86.82 E-value=0.6 Score=46.40 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=25.7
Q ss_pred CCceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 101 SITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 101 ~~~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.-.+|+|.+|++++||.|..||+|++||
T Consensus 246 AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 246 ADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3478999999999999999999999986
No 95
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=86.81 E-value=1 Score=41.99 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.1
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccce
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDKL 132 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdKi 132 (455)
|+=-+++|++||+|++||+|+++.-+.|
T Consensus 101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i 128 (169)
T PRK09439 101 GEGFKRIAEEGQRVKVGDPIIEFDLPLL 128 (169)
T ss_pred CCceEEEecCCCEEeCCCEEEEEcHHHH
Confidence 3446899999999999999999988873
No 96
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=86.48 E-value=1.3 Score=43.95 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=41.0
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc----------eeccCCCeecCCCEEEEEecCCC
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK----------LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK----------i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
+.+.+++-||.|++||+|+.|+... =+++.|-.|+.|-.|+.|+.-.+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~~~V~APidGIVrGlirdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGDVPVVAPIDGLLRGLIHEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcCEEEEccCCeEEEEEecCCCCcCCCCEEEEECCCCC
Confidence 4455999999999999999998766 36789999999999999987664
No 97
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=86.05 E-value=0.45 Score=42.25 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.1
Q ss_pred eecCCCeeecCCcEEEEEccc
Q 012864 111 LKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK 131 (455)
+.++|++|++||+++.||+.|
T Consensus 43 lp~~G~~v~~g~~~~~IEs~K 63 (127)
T TIGR00527 43 LPEVGAEVSAGESCGSVESVK 63 (127)
T ss_pred cCCCCCEecCCCEEEEEEEee
Confidence 346899999999999999999
No 98
>PF13437 HlyD_3: HlyD family secretion protein
Probab=85.87 E-value=1.7 Score=36.32 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=38.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-----eecc--CCCeec-CCCEEEEEec
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAK--EGETVE-PGAKIAVISK 151 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~--~G~~v~-vG~~l~~i~~ 151 (455)
-+|.|..|.+++|+.|.+|++|++|...+ +.+. .-..++ .|+.+-..-.
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~~~~~~~i~~~g~~v~v~~~ 62 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDTDDLWVEAYVPEKDIARIKDPGQKVTVRLD 62 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEccceEEEEEEEChHhhcceEeCCCEEEEEEC
Confidence 47899999999999999999999999766 3333 334776 7887766654
No 99
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=85.56 E-value=0.74 Score=51.34 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=23.0
Q ss_pred EEEeecCCCeeecCCcEEEEEccceec
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDKLIA 134 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdKi~~ 134 (455)
-+++|++||+|++||+|+++.-|+|..
T Consensus 562 F~~~v~~Gd~V~~G~~l~~~D~~~i~~ 588 (627)
T PRK09824 562 FTAHVNVGDKVNTGDLLIEFDIPAIRE 588 (627)
T ss_pred ceEEecCCCEEcCCCEEEEEcHHHHHh
Confidence 488999999999999999998887443
No 100
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=85.41 E-value=0.56 Score=41.81 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=25.3
Q ss_pred ecCCCeeecCCcEEEEEccc----eecc-CCCeecCCCEE
Q 012864 112 KQPGDRVEMDEPIAQIETDK----LIAK-EGETVEPGAKI 146 (455)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK----i~~~-~G~~v~vG~~l 146 (455)
.++|++|++||.++.||+-| ++.+ .|+.+.|.+.|
T Consensus 47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l 86 (131)
T COG0509 47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEAL 86 (131)
T ss_pred CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhh
Confidence 34677899999999999999 6655 45666665443
No 101
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=85.39 E-value=0.59 Score=34.45 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+++++||.|+.|++|+.|+...
T Consensus 16 v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 16 VYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEecCCCEEcCCCEEEEECcHH
Confidence 8999999999999999997654
No 102
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=85.19 E-value=0.73 Score=48.64 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=27.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+.+|++||.|++||+|+++++..
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 66999999999999999999999999876
No 103
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=84.81 E-value=1.2 Score=40.97 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.5
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccce
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDKL 132 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdKi 132 (455)
|+-=+-++++||+|++||+|+++--|+|
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 3345669999999999999999998883
No 104
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=83.44 E-value=1.2 Score=40.96 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=23.9
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+|+|.++++++||.|+.||+|+++
T Consensus 128 ~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 128 KDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEe
Confidence 6899999999999999999999986
No 105
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.32 E-value=0.92 Score=48.53 Aligned_cols=30 Identities=3% Similarity=0.110 Sum_probs=26.6
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
...|.|.+.+|++||.|++||+|+++...-
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 356899999999999999999999997766
No 106
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=83.16 E-value=1.3 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=23.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+|.|.++++++|+.|+.||+|+++
T Consensus 43 ~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 43 VAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CCEEEEEEEECCCCEECCCCEEEEC
Confidence 5799999999999999999999875
No 107
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=82.46 E-value=1 Score=39.86 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=23.7
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccce
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDKL 132 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdKi 132 (455)
|+=-++++++||+|++||+|+++--+.|
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~~~i 106 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDLPAI 106 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHHH
Confidence 4457899999999999999999877663
No 108
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=81.97 E-value=1.3 Score=49.34 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.8
Q ss_pred EEEEEeecCCCeeecCCcEEEEEcccee
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDKLI 133 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdKi~ 133 (455)
+=-+.+||+||+|++||+|+++.-|+|.
T Consensus 544 ~gF~~~v~~g~~V~~G~~l~~~d~~~i~ 571 (610)
T TIGR01995 544 EGFEILVKVGDHVKAGQLLLTFDLDKIK 571 (610)
T ss_pred CCeEEEecCcCEEcCCCEEEEecHHHHH
Confidence 3458899999999999999998877743
No 109
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=80.93 E-value=0.82 Score=40.93 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
|+--+|++++||+|++||+|+++--++
T Consensus 83 G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 83 GEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 455789999999999999999998877
No 110
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=80.76 E-value=1.4 Score=43.87 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
..|.|.+++|++||.|++||+|+++++
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 778999999999999999999999988
No 111
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=80.75 E-value=1.2 Score=39.19 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=23.6
Q ss_pred EEEEEeecCCCeeecCCcEEEEEcccee
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDKLI 133 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdKi~ 133 (455)
+=-++++++||+|++||+|+++--++|.
T Consensus 80 ~gF~~~v~~Gd~V~~G~~l~~~D~~~i~ 107 (121)
T TIGR00830 80 EGFTSHVEEGQRVKKGDPLLEFDLKAIK 107 (121)
T ss_pred CceEEEecCCCEEcCCCEEEEEcHHHHH
Confidence 3458999999999999999999877643
No 112
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=80.00 E-value=1.8 Score=46.06 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=26.7
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.+|+|.++++++||.|+.||+|++||++
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 36899999999999999999999999864
No 113
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=79.65 E-value=1.9 Score=32.05 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=22.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
..|++.++++++|+.|..||+|+++
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3567999999999999999999975
No 114
>PRK09294 acyltransferase PapA5; Provisional
Probab=79.27 E-value=45 Score=34.77 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCCC--ccc----cC------CCcEEEecCCCCCC
Q 012864 338 ERMNFAEIEKEISTLAKKAND-GSIS--IDE----MA------GGTFTISNGGVYGS 381 (455)
Q Consensus 338 ~~~sl~eIa~el~~l~~~a~~-g~l~--~~d----l~------ggTftISNlG~~G~ 381 (455)
...++.|+++++++..+...+ +.+. ..+ +. ..++++||+|.++.
T Consensus 291 ~~~sf~ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 291 PDTDIVDLARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred CCCCHHHHHHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 456999999999877664432 2211 111 11 13789999999864
No 115
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=79.17 E-value=2.2 Score=45.22 Aligned_cols=30 Identities=37% Similarity=0.508 Sum_probs=27.4
Q ss_pred CCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 101 ~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
...+|+|.++++++||.|..|++|+++|.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 347899999999999999999999999865
No 116
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=78.96 E-value=2.1 Score=43.23 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=26.9
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+|+|.+.++++||.|+.|++|++++.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 68999999999999999999999998764
No 117
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=78.80 E-value=2.2 Score=45.15 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=27.5
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|+|.++++++||.|..|++|+++|++.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 478999999999999999999999998753
No 118
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=78.61 E-value=2.3 Score=45.20 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=27.9
Q ss_pred CCceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 101 ~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
...+|.|.+|++++||.|..||+|++++.+.
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 4578999999999999999999999998754
No 119
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=78.57 E-value=2.2 Score=33.24 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=23.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
-+|+|.+|++++||.|..|+.|+++
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 5899999999999999999999875
No 120
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=77.82 E-value=1.5 Score=38.50 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=20.8
Q ss_pred ecCCCeeecCCcEEEEEccc----eecc-CCCeecCCC
Q 012864 112 KQPGDRVEMDEPIAQIETDK----LIAK-EGETVEPGA 144 (455)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK----i~~~-~G~~v~vG~ 144 (455)
.++|+.|++||+++.||++| ++.+ .|..+.+.+
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 46688999999999999999 3333 344444443
No 121
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=76.99 E-value=2.8 Score=46.97 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEeecCCCeeecCCcEEEEEcccee
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDKLI 133 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdKi~ 133 (455)
+=-+.+||+||+|++||+|+++.-|+|.
T Consensus 580 ~gF~~~Vk~Gd~V~~G~~l~~~D~~~i~ 607 (648)
T PRK10255 580 KGFKRLVEEGAQVSAGQPILEMDLDYLN 607 (648)
T ss_pred CCceEEecCCCEEcCCCEEEEEcHHHHH
Confidence 3356778888888888888888777743
No 122
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=76.16 E-value=3.2 Score=40.34 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=18.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
+|.|..+++++|+.|..|++|++|-...
T Consensus 96 dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 96 DGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred CeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 4667777777777777777777665433
No 123
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=74.04 E-value=3.6 Score=43.57 Aligned_cols=29 Identities=41% Similarity=0.573 Sum_probs=27.0
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.+|+|.+.++++||+|..|++|+.++++
T Consensus 51 p~~G~l~~i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 51 PDAGVLAKILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred CCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence 37899999999999999999999999875
No 124
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=73.76 E-value=6.3 Score=39.58 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
.+-+.++.++.||.|++||+|++|..
T Consensus 226 ~~G~~~~~~~~Gd~V~~G~~ig~i~d 251 (287)
T cd06251 226 QGGLLRSLVKLGDKVKKGQLLATITD 251 (287)
T ss_pred CCeEEEEecCCCCEECCCCEEEEEEC
Confidence 34566788999999999999998844
No 125
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=71.66 E-value=6.6 Score=39.76 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred EEEEEEeecCCCeeecCCcEEEE
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
+=+.+.+++.||.|++||+|++|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i 259 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEI 259 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEE
Confidence 44566667777777777777776
No 126
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=71.15 E-value=2.4 Score=36.10 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=21.3
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
-|.-.+=+|++||+|++||.|++.+.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecCC
Confidence 34455679999999999999999864
No 127
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=70.73 E-value=3.7 Score=41.16 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-..|++++||.|+.||.|+++|-+=
T Consensus 65 ~~~~~~~DG~~v~~g~~i~~~~G~a 89 (280)
T COG0157 65 EIQWLVKDGDRVKPGDVLAEIEGPA 89 (280)
T ss_pred EEEEEcCCCCEeCCCCEEEEEeccH
Confidence 3579999999999999999998765
No 128
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=70.09 E-value=5.2 Score=42.76 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=27.1
Q ss_pred CceEEEEEEeecCCCe-eecCCcEEEEEccc
Q 012864 102 ITDGTLAKFLKQPGDR-VEMDEPIAQIETDK 131 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~-V~~gd~l~evetdK 131 (455)
-.+|+|.+|++++||. |..|++|+++|.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 3679999999999999 99999999998754
No 129
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=68.65 E-value=5 Score=44.61 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=25.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
.+|+|.++++++||.|+.||+|++||.
T Consensus 569 ~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 569 ANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 578999999999999999999999985
No 130
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=68.50 E-value=4.5 Score=44.98 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=24.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
..|+|.+|++++||.|+.||+|++||
T Consensus 566 ~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 566 VDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 68999999999999999999999986
No 131
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=67.73 E-value=9.8 Score=39.63 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=17.3
Q ss_pred eEEEEEEeecCCCeeecCCcEEEE
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+-+.++++++||.|++||+|++|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I 319 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEI 319 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEE
Confidence 445666777777777777777776
No 132
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=65.85 E-value=4.2 Score=40.44 Aligned_cols=21 Identities=43% Similarity=0.759 Sum_probs=18.4
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-+-+|||||+|++||+|++ ||
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK 61 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DK 61 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eC
Confidence 4569999999999999996 77
No 133
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.58 E-value=5.7 Score=39.96 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+|++++||.|++||+|++++-+=
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~~ 89 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGPV 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEECH
Confidence 689999999999999888887654
No 134
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=65.23 E-value=7.1 Score=42.16 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=26.7
Q ss_pred CCceEEEEEEeecCCC-eeecCCcEEEEEcc
Q 012864 101 SITDGTLAKFLKQPGD-RVEMDEPIAQIETD 130 (455)
Q Consensus 101 ~~~e~~i~~w~v~~Gd-~V~~gd~l~evetd 130 (455)
...+|+|.++++++|| .|+.|++|+++|.+
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 3479999999999995 79999999999864
No 135
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=64.88 E-value=8.9 Score=38.75 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=40.9
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEEE
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAVI 149 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~i 149 (455)
...|+-|. .|.|.++.+++|+.|..|++|++|..+. ..+.+.+ .+++|+.+-.-
T Consensus 204 ~~~I~AP~------~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~e~~~~~i~~G~~v~v~ 264 (334)
T TIGR00998 204 RTVIRAPF------DGYVARRFVQVGQVVSPGQPLMAVVPAEQMYVEANFKETQLKNVRIGQPVTIR 264 (334)
T ss_pred CcEEEcCC------CcEEEEEecCCCCEeCCCCeeEEEEcCCcEEEEEecCHHHHhhCCCCCEEEEE
Confidence 34566663 6899999999999999999999997665 4444443 67788776654
No 136
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=64.55 E-value=1.3e+02 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.6
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcChh
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 449 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~ 449 (455)
..|.+.+||=++||.-...|+++|.+++++..
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhccc
Confidence 45888999999999999999999999887764
No 137
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.87 E-value=15 Score=37.48 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=16.5
Q ss_pred EEEEEEeecCCCeeecCCcEEEE
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
+-+.+.+++.||.|++||+|++|
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i 274 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRI 274 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEE
Confidence 44566677777777777777776
No 138
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.66 E-value=6.9 Score=39.46 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.0
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|++++||.|++||+|++++-+=
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G~a 90 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTGPA 90 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEecH
Confidence 4689999999999999999887654
No 139
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=62.24 E-value=7.8 Score=38.72 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.3
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++--++|++++||.|++||+|+++|-+=
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G~~ 83 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEGPA 83 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEECH
Confidence 3455789999999999999888887654
No 140
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=62.20 E-value=17 Score=43.71 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=45.7
Q ss_pred CceEEEEccCCCCCCceE----------EEEEEeecCCCeeecCCcEEEEEccc--------------eeccCCCeecCC
Q 012864 88 GDLVDAVVPFMGESITDG----------TLAKFLKQPGDRVEMDEPIAQIETDK--------------LIAKEGETVEPG 143 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~----------~i~~w~v~~Gd~V~~gd~l~evetdK--------------i~~~~G~~v~vG 143 (455)
|....|++-.+|+.-.+| ...+..++.|+.+..++.....+.+. +++++||.|+.|
T Consensus 1020 g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~~~~~I~a~~~G~v~~~~v~~Gd~V~~G 1099 (1143)
T TIGR01235 1020 GKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKG 1099 (1143)
T ss_pred CcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccccCceeecCCCcEEEEEEeCCCCEeCCC
Confidence 445556666676543333 45566788888777766654443333 999999999999
Q ss_pred CEEEEEecCC
Q 012864 144 AKIAVISKSG 153 (455)
Q Consensus 144 ~~l~~i~~~~ 153 (455)
++|++|++..
T Consensus 1100 d~L~~iEamK 1109 (1143)
T TIGR01235 1100 DPLVVLEAMK 1109 (1143)
T ss_pred CEEEEEEecc
Confidence 9999998743
No 141
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=61.95 E-value=5.7 Score=42.43 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=15.5
Q ss_pred EEEEEEeecCCCeeecCCcEEEEE
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
+-=+.|++|.||.|++||+|++|=
T Consensus 379 ~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 379 SVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred ccCeEeccCCcCEeCCCCeEEEEE
Confidence 333566777777777777776665
No 142
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=61.22 E-value=6.1 Score=42.34 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=20.7
Q ss_pred CCCceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 100 ESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 100 ~~~~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
+-++-+-=++|++|.||.|++||+||+|=+
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 334444446778888888888888887763
No 143
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.08 E-value=7.7 Score=39.04 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.2
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+|++++||.|++||+|++++-+=
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~~ 91 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGPA 91 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEcH
Confidence 789999999999999888887654
No 144
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=60.60 E-value=7.8 Score=39.14 Aligned_cols=25 Identities=4% Similarity=0.057 Sum_probs=19.9
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|++++||.|++||+|++++-+=
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~G~a 86 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQGNA 86 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEeCH
Confidence 3688889999988888888887543
No 145
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=60.34 E-value=9.3 Score=40.36 Aligned_cols=30 Identities=40% Similarity=0.505 Sum_probs=27.3
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|+|.++++++||.|..|++|++++.+.
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 478999999999999999999999998754
No 146
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=59.72 E-value=11 Score=32.95 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=24.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-------------eeccCCCeecCCCEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-------------LIAKEGETVEPGAKIA 147 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-------------i~~~~G~~v~vG~~l~ 147 (455)
..|+|.+...++ +|.-...|+|+. +++++||.|+.|++|-
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESSS-BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCCCeEEEcCCCEEecCCccc
Confidence 456666666644 455556666665 8899999999998874
No 147
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.33 E-value=8.4 Score=38.60 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=20.0
Q ss_pred EEEEEeecCCCeeecCCcEEEEEccc
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
--++|++++|+.|++||+|++++-+=
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G~~ 81 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEGPA 81 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEEcH
Confidence 34578888888888888888887654
No 148
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.10 E-value=8.5 Score=38.95 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|++++||.|++||+|++++-+=
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G~a 97 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEGPL 97 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEcH
Confidence 3578999999999999888887654
No 149
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.74 E-value=8.7 Score=38.99 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=16.0
Q ss_pred EEEeecCCCeeecCCcEEEEEcc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetd 130 (455)
.+|+++.||.|++||+|++++-+
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEEeC
Confidence 56777777777777777776644
No 150
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=58.56 E-value=9.1 Score=38.21 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
+--.+|++++|+.|+.||+|+++|-+=
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G~~ 82 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEGPA 82 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEcH
Confidence 334679999999999999999888654
No 151
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=58.21 E-value=7.8 Score=42.05 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 98 lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
+|--++-+-=+.+++|.||.|++||+|++|=.+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 455566666678999999999999999998743
No 152
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=58.14 E-value=9 Score=38.93 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=13.7
Q ss_pred EEEeecCCCeeecCCcEEEEEcc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetd 130 (455)
++|++++|+.|++||+|++++-+
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 45666666666666666665543
No 153
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=58.05 E-value=13 Score=29.88 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeccCCCeecCCCEEEEEecCCCc
Q 012864 132 LIAKEGETVEPGAKIAVISKSGEG 155 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~~~ 155 (455)
++++.||.|+.|++|++|-.+.+.
T Consensus 36 l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 36 LHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp ESS-TTSEEBTTSEEEEEEESSSS
T ss_pred ecCcCcCEECCCCeEEEEEcCChH
Confidence 889999999999999999877654
No 154
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=57.93 E-value=8.5 Score=39.43 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=36.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAV 148 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~ 148 (455)
-+|.|.+..+++|+.|..|++|++|-... ..++|.+ .++.|+++-+
T Consensus 215 ~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~l~v~~~v~e~~~~~v~~Gq~v~i 267 (346)
T PRK10476 215 FDGRVVGLKVSVGEFAAPMQPIFTLIDTDHWYAIANFRETDLKNIRVGDCATV 267 (346)
T ss_pred CCcEEEeeecCCCCCcCCCCeEEEEecCCCEEEEEEEcHHHHhhCCCCCEEEE
Confidence 57899999999999999999999987655 4455554 5777776544
No 155
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=57.85 E-value=6.6 Score=35.96 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=9.4
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
+.+.+|+.|..|+.||.+.+
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T 113 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTT 113 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-
T ss_pred EEcccCcEeccCcEEEEEEe
Confidence 55555666666666665554
No 156
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=57.24 E-value=20 Score=36.92 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=16.3
Q ss_pred EEEEEEeecCCCeeecCCcEEEEE
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
+=+.+..++.||.|++||+|++|=
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~ 286 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVY 286 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEE
Confidence 334566677777777777777764
No 157
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=56.84 E-value=10 Score=38.82 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=17.3
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++++-+=
T Consensus 80 v~~~~~dG~~v~~G~~i~~v~G~a 103 (308)
T PLN02716 80 VEWAAIDGDFVHKGLKFGKVTGPA 103 (308)
T ss_pred EEEEeCCCCEecCCCEEEEEEECH
Confidence 457888888887777777776543
No 158
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=56.74 E-value=8.8 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=16.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
+-+-=++|++|.||.|++||+|++|=+|+
T Consensus 373 d~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 373 DLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 33333456666666666666666655444
No 159
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=56.69 E-value=8.3 Score=40.88 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.4
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
++-+-=+.+++|.||.|++||+||.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 55555578899999999999999998643
No 160
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=56.68 E-value=32 Score=28.07 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=30.4
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEccc-----------eeccCCCeecCCCEEEEEecCC
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK-----------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+.+|+|..+-..+ ...-...|+.+. +.+++||.|+.|+.|+.+...+
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGHLDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEEESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEEeccccccceecccccCCCEEEecCCCC
Confidence 4567777666633 334455555554 6788999999999999987544
No 161
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.44 E-value=10 Score=38.13 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+|++++|+.|++||+|++++-+=
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G~a 83 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEGDF 83 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEECH
Confidence 588888888888888888887554
No 162
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.33 E-value=10 Score=38.22 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=20.3
Q ss_pred EEEEEeecCCCeeecCCcEEEEEccc
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
--.+|++++||.|++||+|++++-+=
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G~a 95 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISGPA 95 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEECH
Confidence 34688888888888888888887543
No 163
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=56.04 E-value=11 Score=41.40 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.2
Q ss_pred CCceEEEEEEeecCCC-eeecCCcEEEEEc
Q 012864 101 SITDGTLAKFLKQPGD-RVEMDEPIAQIET 129 (455)
Q Consensus 101 ~~~e~~i~~w~v~~Gd-~V~~gd~l~evet 129 (455)
...+|+|.++++++|| .|..|++||+++.
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 3478999999999996 7999999998854
No 164
>PRK04350 thymidine phosphorylase; Provisional
Probab=55.75 E-value=9 Score=41.57 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 98 lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
+|--++-+-=+.+++|.||.|++||+|+.|=.+
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 455566666678999999999999999998743
No 165
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.20 E-value=11 Score=38.23 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=18.1
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-++|++++|+.|++||+|++++-+=
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~a 101 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAPT 101 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEECH
Confidence 4567888888888888777776543
No 166
>COG3608 Predicted deacylase [General function prediction only]
Probab=54.78 E-value=9 Score=39.46 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=21.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
.++-+++.+++.||.|++||.|+.|=.
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEec
Confidence 455678889999999999998887754
No 167
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=54.54 E-value=9.3 Score=41.54 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=26.4
Q ss_pred CCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 98 lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
+|--++-+-=+.+++|.||.|++||+|++|=.+
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 455566666678999999999999999998743
No 168
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=54.49 E-value=12 Score=37.44 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++++-+=
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G~~ 79 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEGPA 79 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEEcH
Confidence 479999999999999888887654
No 169
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=54.38 E-value=12 Score=37.73 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=19.6
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|+++.||.|+.||.|++++-+=
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~G~a 85 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAKGSA 85 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEecH
Confidence 4678888888888888888887554
No 170
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=54.06 E-value=17 Score=35.19 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=18.9
Q ss_pred eeccCCCeecCCCEEEEEecCCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
+.+.+|+.|..|++|+.|...+.
T Consensus 102 ~~~~~G~~v~~g~~l~~i~~~~~ 124 (265)
T TIGR00999 102 KSVTLGDYVAPQAELFRVADLGA 124 (265)
T ss_pred EEcCCCCEeCCCCceEEEEcCCc
Confidence 57789999999999999876543
No 171
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.57 E-value=12 Score=37.70 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-.+|++++||.|+.||+|++++-+=
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~G~~ 83 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELKGNA 83 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEEECH
Confidence 4577888888888888888887554
No 172
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.45 E-value=13 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=23.7
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+|+|.++++++||.|+.||+|++|
T Consensus 568 ~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 568 QAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEe
Confidence 6799999999999999999999987
No 173
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=52.05 E-value=16 Score=38.96 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=27.4
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
+-|+++++|.+.||.-+..|++.|.++...
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 448999999999999999999999998865
No 174
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.97 E-value=13 Score=37.36 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.9
Q ss_pred eEEEEEEeecCCCeeecCCcEEEE
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+-+.+.+++.||.|++||+|++|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i 253 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYV 253 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEE
Confidence 455777888899999999999888
No 175
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=51.69 E-value=12 Score=45.01 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.7
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.++++++||.|+.||+|+.||
T Consensus 1176 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1176 VAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 68999999999999999999999986
No 176
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=51.61 E-value=24 Score=33.82 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=30.8
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc-----------eeccCCCeecCCC-EEEE
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK-----------LIAKEGETVEPGA-KIAV 148 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK-----------i~~~~G~~v~vG~-~l~~ 148 (455)
..|.. ++++||.+++||-+--++--- +.+++||.|..|+ +|+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fGStV~l~~p~~~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFGSRVDVYLPLGTEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecCCeEEEEEcCCCcccccCCCEEEcccEEEEE
Confidence 44544 468899999998776655432 8889999999997 4444
No 177
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=51.27 E-value=25 Score=33.17 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=27.0
Q ss_pred EEEEEeecCCCeeecCCcEEEEEccc-----------eeccCCCeecCCCEE
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDK-----------LIAKEGETVEPGAKI 146 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdK-----------i~~~~G~~v~vG~~l 146 (455)
.|..| +++|+.|++||-+--++--- +.+++|+.|..|+.|
T Consensus 131 ~i~~~-~~~g~~v~kGeeiG~f~fGStv~ll~p~~~~~~v~~G~~V~~G~tl 181 (189)
T TIGR00164 131 RIVCY-VKEGEKVSRGQRIGMIRFGSRVDLYLPENAQAQVKVGEKVTAGETV 181 (189)
T ss_pred EEEEe-cCCCCEEecCcEEEEEecCCeEEEEEcCCCccccCCCCEEEeceEE
Confidence 44333 47888888888766555431 777888888888854
No 178
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.13 E-value=13 Score=37.38 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.7
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
.+=+.+..++.||.|++||.|++|-.
T Consensus 238 ~~Gi~~~~~~~G~~V~~Gq~lg~I~d 263 (293)
T cd06255 238 HGGLFEPSVPAGDTIPAGQPLGRVVD 263 (293)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEEC
Confidence 45567788899999999999998843
No 179
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=51.10 E-value=18 Score=37.86 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=36.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAVI 149 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~i 149 (455)
-.|.|.+..+++|+.|..|++|+.|-.+. ..++|.+ .+++|+++-+.
T Consensus 222 ~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~l~V~a~v~E~~l~~v~~Gq~V~I~ 275 (390)
T PRK15136 222 MTGYVSRRSVQVGAQISPTTPLMAVVPATNLWVDANFKETQLANMRIGQPATIT 275 (390)
T ss_pred CCeEEEEEecCCCCEeCCCCeEEEEEeCCcEEEEEecCHHHHhcCCCCCEEEEE
Confidence 46899999999999999999999986544 3444443 77788777654
No 180
>PRK12999 pyruvate carboxylase; Reviewed
Probab=50.79 E-value=14 Score=44.33 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=24.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.++++++||.|+.||+|++||
T Consensus 1120 ~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1120 VDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 57999999999999999999999997
No 181
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=50.53 E-value=17 Score=38.34 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=27.3
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
+-|++++.|.++||.-+..|++.|.+....
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 348999999999999999999999998865
No 182
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=49.06 E-value=22 Score=33.75 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=36.7
Q ss_pred EEccCCCCCCceEEEEEEee-cCCCeeecCCcEEEE----------Eccc---eeccCCCeecCCCEEE
Q 012864 93 AVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQI----------ETDK---LIAKEGETVEPGAKIA 147 (455)
Q Consensus 93 i~~P~lg~~~~e~~i~~w~v-~~Gd~V~~gd~l~ev----------etdK---i~~~~G~~v~vG~~l~ 147 (455)
+.|=.+|. +.=+.|.-|.. ++|+.|++||.+--+ |-|+ +.+++|+.|..|+.|+
T Consensus 134 v~~v~Vga-~~v~~I~~~~~~~~g~~v~kG~e~G~f~fGStvvl~f~~~~~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 134 VAVVQVGA-LLVGSIVLTVDPKEGDEVKKGEELGYFRFGSTVVLLFPKDKIFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred EEEEEecc-ceeceeEEEecccCCCEEecCcEeCEEecCCeEEEEEeCCCccccccCCCCEEEeeeEEe
Confidence 33334544 34455666654 699999999866444 4553 7888999999998886
No 183
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=48.58 E-value=18 Score=35.93 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=34.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAV 148 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~ 148 (455)
-+|.|..+.+++|+.|.+|++|++|.... +.+.+.+ .++.|+.+-.
T Consensus 141 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~~~~~~~l~~G~~v~v 193 (322)
T TIGR01730 141 FDGTIGRRLVEVGAYVTAGQTLATIVDLDPLEADFSVPERDLPQLRRGQTLTV 193 (322)
T ss_pred CCcEEEEEEcCCCceeCCCCcEEEEEcCCcEEEEEEeCHHHHHHhhCCCeEEE
Confidence 47899999999999999999999998655 3334433 5666765433
No 184
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=48.25 E-value=15 Score=30.04 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=17.8
Q ss_pred EEEEeecCCCeeecCCcEEEEEcc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
+.+-.|++||.|++||.|..+-..
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 444459999999999999999854
No 185
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=47.82 E-value=22 Score=37.10 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=25.4
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhcCh
Q 012864 419 YIALTYDHRLIDGREAVFFLRRIKDIVEDP 448 (455)
Q Consensus 419 ~lslt~DHRviDGa~aa~Fl~~lk~~LE~P 448 (455)
-|+++++|-++||.-+..|++.|.+.....
T Consensus 148 ~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 148 ALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 489999999999999999999999988654
No 186
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.66 E-value=21 Score=36.19 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=36.1
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAVI 149 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~i 149 (455)
-.|.|.++.+++|+.|..|++|+.|-... ..+++.+ .+++|+.+-..
T Consensus 210 ~dG~V~~~~~~~G~~V~~G~~l~~I~~~~~~~v~~~V~e~~~~~i~~Gq~v~v~ 263 (331)
T PRK03598 210 SDGTILTRAVEPGTMLNAGSTVFTLSLTRPVWVRAYVDERNLGQAQPGRKVLLY 263 (331)
T ss_pred CCeEEEeccCCCCCCcCCCCeEEEEecCCceEEEEEECHHHHhhCCCCCEEEEE
Confidence 46889999999999999999999996544 4455543 67788775543
No 187
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=46.06 E-value=19 Score=37.44 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=24.0
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
+.-.+|+.+ |.|.+.+|+.++.|++||+|++|.
T Consensus 53 vv~Iap~Vs-----G~V~eV~V~dnq~Vk~Gd~L~~iD 85 (352)
T COG1566 53 VVPIAPQVS-----GRVTEVNVKDNQLVKKGDVLFRID 85 (352)
T ss_pred EEEEcCcCc-----eEEEEEEecCCCEecCCCeEEEEC
Confidence 334566654 678888899999888888777664
No 188
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=45.70 E-value=23 Score=37.50 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=27.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 348999999999999999999999998875
No 189
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=45.60 E-value=18 Score=37.49 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=20.7
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++++ |++++|+.|++||+|++||-+=
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~~ 94 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGPY 94 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEcH
Confidence 4454 8899999999999988888665
No 190
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=45.05 E-value=35 Score=34.62 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=38.8
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAVI 149 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~i 149 (455)
..|+=| -+|.|.+..+++|+.|..|++|++|-... ..+.|-+ .+++|+.+-..
T Consensus 155 ~~I~AP------~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~l~v~~~V~e~~i~~v~~G~~v~v~ 214 (310)
T PRK10559 155 TVIRAP------ADGWVTNLNVYTGEFITRGSTAVALVKQNSFYVLAYMEETKLEGVRPGYRAEIT 214 (310)
T ss_pred CEEECC------CCeEEEeEecCCCCEecCCCeeEEEEeCCCEEEEEEEChHHhhhCCCCCEEEEE
Confidence 455555 46899999999999999999999875443 4455554 57778776543
No 191
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=44.26 E-value=32 Score=34.33 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=31.1
Q ss_pred EEEEEeecCCCeeecCCcEE----------EEEccc--eeccCCCeecCCCEEEEE
Q 012864 106 TLAKFLKQPGDRVEMDEPIA----------QIETDK--LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~----------evetdK--i~~~~G~~v~vG~~l~~i 149 (455)
.+..|.. +|+.|++||.+- -.|-|+ +.+++|+.|..|+.|+.|
T Consensus 211 ~i~~~~~-~~~~v~kGee~G~F~fGSTVvllf~~~~~~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYEY-ENLKLKKGEELGNFEMGSTIVLFSQKGSLEFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred ceeeecc-CCceEccccEeeEEccCCEEEEEEeCCcceEccCCCCEEEcchhhccC
Confidence 4555544 599999998654 445554 778889999999988754
No 192
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=44.18 E-value=26 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.2
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
||-.+--.+.+||+|.+||.|+-+.|-|
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~K 115 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRK 115 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TT
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecC
Confidence 5556678899999999999999999999
No 193
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=43.11 E-value=24 Score=36.75 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=19.4
Q ss_pred EEEEEeecCCCeeecCCcEEEEEccc
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+..|.+++|+.|..||+|++||-+=
T Consensus 71 ~~~i~a~~eG~~v~~gepvl~i~G~~ 96 (352)
T PRK07188 71 KLKIRYLKDGDIINPFETVLEIEGPY 96 (352)
T ss_pred ceEEEEcCCCCEecCCCEEEEEEEcH
Confidence 34577888888888888888877654
No 194
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=42.81 E-value=19 Score=39.63 Aligned_cols=26 Identities=31% Similarity=0.541 Sum_probs=24.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.+..+++||.|.+|++|+|+|
T Consensus 619 ~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 619 RDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred cCcEEEEEEecCCCccccCceEEEec
Confidence 57899999999999999999999986
No 195
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=42.34 E-value=31 Score=30.51 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.6
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 88999999999999999974
No 196
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=42.10 E-value=26 Score=34.83 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=28.5
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEccc---eeccCCCeecCCCEEEEEecCC
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK---LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
...+++..+..-.|--+. .+..+.-+.+= +++++||.|+.|++|+.|+...
T Consensus 2 V~~~~~~~~i~~~G~v~~-~~~~v~~~~~G~v~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 2 VKRGTISQTIEASGTVEP-NEVSVSAPVSGRVSVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp SSEEEE--EEEEEEEEEE-SEEEE--SS-EEEEE-S-TTSEEETT-EEEEEE-HH
T ss_pred eEEeEeeEEEEEEEEEEE-EEEEEECCCCEEEEEEeCCcCEECCCCEEEEEEChh
Confidence 345566666666665554 44433333332 8999999999999999998654
No 197
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=41.75 E-value=27 Score=44.98 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.4
Q ss_pred EEeecCCCeeecCCcEEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~ev 127 (455)
..+|++||.|++||.|||.
T Consensus 2423 ~l~v~~g~~V~~g~~la~w 2441 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEW 2441 (2836)
T ss_pred EEEecCCCEecCCCEEEEE
Confidence 5689999999999999875
No 198
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=41.55 E-value=19 Score=36.29 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.4
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|++++||.|+.|++|+.|+...
T Consensus 30 i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 30 LLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EEccCCCEecCCcEEEEecCcH
Confidence 9999999999999999998754
No 199
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=40.92 E-value=26 Score=32.28 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.6
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|..++-
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EEeeCCCEEccCCEEEEECH
Confidence 79999999999999999974
No 200
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.89 E-value=25 Score=35.72 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=19.4
Q ss_pred EEEEEee--cCCCeeecCCcEEEEEccc
Q 012864 106 TLAKFLK--QPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 106 ~i~~w~v--~~Gd~V~~gd~l~evetdK 131 (455)
-..+|++ ++||.|++||+|++++-+=
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G~a 98 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIGSV 98 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEECH
Confidence 3457777 8888888888888887554
No 201
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=40.10 E-value=31 Score=36.41 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=37.3
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKI 146 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l 146 (455)
..|+-| -.|.|.+-.+++|+.|+.|++|++|.... +.+.|.+ .+++|+.+
T Consensus 210 ~~I~AP------~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~l~v~~~Vpe~~~~~i~~G~~v 266 (409)
T PRK09783 210 FTLKAP------IDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQF 266 (409)
T ss_pred EEEECC------CCeEEEEEECCCCCEECCCCeEEEEEcCCeEEEEEEeCHHHHHhccCCCEE
Confidence 456666 37899999999999999999999997665 3344443 55666654
No 202
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=39.83 E-value=17 Score=39.02 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
|.-.+-+||+||+|+.||+|++-...-
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~~ 64 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKKNP 64 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCCc
Confidence 444567999999999999999865433
No 203
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=39.55 E-value=32 Score=36.57 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=27.1
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
+-|++++.|.++||.-+..|++.|.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 348999999999999999999999998764
No 204
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=38.66 E-value=39 Score=35.58 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=36.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc----c-----eeccCCC--eecCCCEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD----K-----LIAKEGE--TVEPGAKIAVI 149 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd----K-----i~~~~G~--~v~vG~~l~~i 149 (455)
-+|.|....+.+|+.|..|++|++|..+ + +.+++.+ .+++|+++-..
T Consensus 260 ~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~~~~~l~v~~~v~e~~~~~v~~G~~v~v~ 317 (421)
T TIGR03794 260 HSGRVIELNYTPGQLVAAGAPLASLEVEDQTDEGLEGVAYFPVAEGKKIRPGMSVQIT 317 (421)
T ss_pred CCeEEEEeeCCCCCEecCCCcEEEEEccCCCCCcEEEEEEECHHHHhhCCCCCEEEEE
Confidence 5789999999999999999999999642 2 4555555 67888875554
No 205
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=38.59 E-value=17 Score=35.78 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=15.7
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|++++||.|+.|++|+.|+...
T Consensus 15 i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 15 ILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp E-S-TTEEE-TTSECEEE--HH
T ss_pred EEccCcCEEeCCCEEEEEEeec
Confidence 8999999999999999998644
No 206
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=38.20 E-value=61 Score=33.35 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=31.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-----------eeccCCCeecCCCEEEEEecCCC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----------LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----------i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
.+|+|+.. |+.....-.++.|+.+. +++++||.|+.|+.|+.+...+.
T Consensus 236 a~G~Vv~a----g~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~tg~ 294 (319)
T PRK10871 236 ADGRVVYA----GNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGT 294 (319)
T ss_pred cCeEEEEE----eeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcCCCC
Confidence 45555544 33222223456666543 89999999999999999976553
No 207
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.00 E-value=38 Score=35.07 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=37.3
Q ss_pred EEEEccCCCCCCceEEEEEEee-cCCCeeecCCcEEEEEc--cc----eeccCCC--eecCCCEEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIET--DK----LIAKEGE--TVEPGAKIA 147 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v-~~Gd~V~~gd~l~evet--dK----i~~~~G~--~v~vG~~l~ 147 (455)
..|+-| -.|.|..+.+ ++|+.|..|++|++|-. |. +.+++.| .++.|+.+-
T Consensus 272 ~~i~AP------~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~~~~~v~~~v~~~~~~~i~~G~~v~ 331 (423)
T TIGR01843 272 LIIRSP------VDGTVQSLKVHTVGGVVQPGETLMEIVPEDDPLEIEAKLSPKDIGFVHVGQPAE 331 (423)
T ss_pred cEEECC------CCcEEEEEEEEccCceecCCCeeEEEecCCCcEEEEEEEChhhhhhhCCCCceE
Confidence 455555 4688888875 79999999999999974 33 5556655 677777644
No 208
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=37.89 E-value=23 Score=40.57 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=24.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.+.+|+.||.|+.||.|++++
T Consensus 1123 ~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1123 FDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEeEEEecCCCccccCceEEEcc
Confidence 57999999999999999999999986
No 209
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=37.56 E-value=34 Score=30.59 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.0
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 88 ~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 88 TLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp ESS-TTSEE-TTEEEEEE-H
T ss_pred EEEeCCCEEECCCEEEEEcH
Confidence 89999999999999999974
No 210
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=37.38 E-value=20 Score=37.64 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=16.8
Q ss_pred ceEEEEEEe-------ecCCCeeecCCcEEE
Q 012864 103 TDGTLAKFL-------KQPGDRVEMDEPIAQ 126 (455)
Q Consensus 103 ~e~~i~~w~-------v~~Gd~V~~gd~l~e 126 (455)
.+|.|.+.+ |++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 467777765 677777777777764
No 211
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=37.19 E-value=38 Score=35.82 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.1
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+++++||.|+.|++|+.|+..+
T Consensus 101 i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 101 LHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred EECCCCCEecCCCEEEEECcHH
Confidence 8999999999999999997653
No 212
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=36.62 E-value=46 Score=34.37 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.2
Q ss_pred eeccCCCeecCCCEEEEEecC
Q 012864 132 LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~ 152 (455)
+++++||.|+.|++|+.|+..
T Consensus 75 v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 75 LSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEcCCCCEEcCCCEEEEECcH
Confidence 889999999999999999653
No 213
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=35.54 E-value=29 Score=36.18 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=19.5
Q ss_pred eeccCCCeecCCCEEEEEecC
Q 012864 132 LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~ 152 (455)
+++++||.|+.|++|+.|+..
T Consensus 75 i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 75 RNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEcCCcCEecCCCEEEEECcH
Confidence 899999999999999999754
No 214
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=35.52 E-value=20 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.5
Q ss_pred EEEeecCCCeeecCCcEEEEEc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (455)
.+.+|++||.|++||.|+++=.
T Consensus 270 ~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 270 DTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CccccCCcCEECCCCeEEeEcC
Confidence 3457999999999999998753
No 215
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=35.44 E-value=49 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=16.4
Q ss_pred eecCCCeeecCCcEEEEE
Q 012864 111 LKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 111 ~v~~Gd~V~~gd~l~eve 128 (455)
.+|+||.|..||.|.+|.
T Consensus 54 ~~k~gd~v~~gd~~g~v~ 71 (369)
T cd01134 54 LVKVGDHVTGGDILGTVP 71 (369)
T ss_pred ccccCCCccCCCEEEEEe
Confidence 468999999999999997
No 216
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=35.21 E-value=29 Score=37.32 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
|.-.+-+|++||+|++||+|++-..+-
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~~ 65 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKNP 65 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCCc
Confidence 344567999999999999999765544
No 217
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=35.06 E-value=44 Score=35.71 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.2
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|+|+|||.|+.|++|+.|+...
T Consensus 73 i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 73 NYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEcCCCCEecCCCEEEEECchH
Confidence 8999999999999999997654
No 218
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=34.58 E-value=24 Score=37.11 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=15.5
Q ss_pred ceEEEEEEe-------ecCCCeeecCCcEEE
Q 012864 103 TDGTLAKFL-------KQPGDRVEMDEPIAQ 126 (455)
Q Consensus 103 ~e~~i~~w~-------v~~Gd~V~~gd~l~e 126 (455)
.+|.|.+.+ |++||.|++||.|..
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 467788776 456666666666653
No 219
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=34.33 E-value=22 Score=37.06 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=16.7
Q ss_pred eecCCCeeecCCcEEEEEccc
Q 012864 111 LKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK 131 (455)
.|++||.|++||+|+| ||
T Consensus 44 kV~~gD~VkkGq~LfE---dK 61 (447)
T COG1726 44 KVREGDAVKKGQVLFE---DK 61 (447)
T ss_pred eeccCCeeeccceeee---cc
Confidence 7999999999999997 77
No 220
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=34.27 E-value=42 Score=35.75 Aligned_cols=33 Identities=15% Similarity=0.451 Sum_probs=29.4
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhcChh
Q 012864 417 MMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 449 (455)
Q Consensus 417 ~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~ 449 (455)
...|.+.+||-+.||.-+..|.+.|-+.|+.+.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 456899999999999999999999999998643
No 221
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=34.01 E-value=33 Score=36.47 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=15.8
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
++.+.||.|++|++|++|-.+.
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya~~ 402 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYAES 402 (435)
T ss_pred EEecCCCeeccCCeEEEEecCC
Confidence 6677777777777777776643
No 222
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=33.67 E-value=38 Score=29.84 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.6
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 78999999999999999974
No 223
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=32.78 E-value=53 Score=27.93 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.1
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.+|++||.|..|+.|+..+.
T Consensus 44 p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 44 PVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred EEEcCCCEEcCCCEEEecCC
Confidence 78999999999999999753
No 224
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=32.35 E-value=15 Score=32.03 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=10.4
Q ss_pred EeecCCCeeecCCcEE
Q 012864 110 FLKQPGDRVEMDEPIA 125 (455)
Q Consensus 110 w~v~~Gd~V~~gd~l~ 125 (455)
.+|++||.|++||+|-
T Consensus 46 LiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 46 LIVSEGQSVKADQPLT 61 (118)
T ss_dssp BS--TT-EETTT-BSB
T ss_pred EEEcCCCEEecCCccc
Confidence 5799999999999983
No 225
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=32.26 E-value=44 Score=34.76 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+++++||.|+.|++|+.|+..+
T Consensus 77 v~v~~Gd~VkkGq~La~ld~~~ 98 (385)
T PRK09578 77 RTYEEGQEVKQGAVLFRIDPAP 98 (385)
T ss_pred EECCCCCEEcCCCEEEEECCHH
Confidence 8999999999999999996543
No 226
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=32.23 E-value=42 Score=33.23 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=22.1
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+-+..|.+++|+.|+.||++++||-+=
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G~~ 75 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEGPA 75 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEEcH
Confidence 3456688889999999988888888654
No 227
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=32.07 E-value=6.7e+02 Score=26.94 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=50.9
Q ss_pred EEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHH--HHhhc--CCcccEEEeCCeEEEcCCccEEEEEecC---
Q 012864 254 TFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV--SALQH--QPVVNAVIDGDDIIYRDYIDISFAVGTK--- 326 (455)
Q Consensus 254 ~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a--~AL~~--~P~lNa~l~~~~i~~~~~vnIgiAV~~~--- 326 (455)
....+|.+++..+..-.+ +-+.|++++++.|.. +.+-+ |+..|. ++-|+++||..
T Consensus 218 ~~~~I~~~ef~~ikay~k-------~~gaTiNDiilaa~~~fr~~y~~~~~k~~~-----------~lsi~~~VDlRkyl 279 (439)
T COG4908 218 EKTTIPSDEFKKIKAYAK-------VHGATINDIILAALLKFRLLYNTTHEKANN-----------YLSIDMPVDLRKYL 279 (439)
T ss_pred EEEecCHHHHHHHHHhhh-------hcCCcHHHHHHHHHHHHHHHHhhhchhhcC-----------eeeeceeeehhhhc
Confidence 344566666544322221 236799999988883 33332 444444 34455555521
Q ss_pred ----------CCeEEEEEccCCCCCHHHHHHHHHHHHH
Q 012864 327 ----------KGLVVPVIRNSERMNFAEIEKEISTLAK 354 (455)
Q Consensus 327 ----------~GL~vPvI~~a~~~sl~eIa~el~~l~~ 354 (455)
.+..+-+|+..+..++....+.+++...
T Consensus 280 ~sk~~sI~Nls~~~~i~I~~dd~~~fe~t~~~vk~~~~ 317 (439)
T COG4908 280 PSKEESISNLSSYLTIVINVDDVTDFEKTLEKVKGIMN 317 (439)
T ss_pred cccccceeccceeEEEEEeccccccHHHHHHHHHhhcC
Confidence 2456778999999999999888877655
No 228
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=31.98 E-value=72 Score=31.57 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=32.6
Q ss_pred eEEEEEEeecCCCeeecCCcE--EEEEc----cc-----------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPI--AQIET----DK-----------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l--~evet----dK-----------i~~~~G~~v~vG~~l~~i~ 150 (455)
.+-+.++.++.||.|++||+| .++-. ++ +...+.-.|..|+.|+.+.
T Consensus 227 ~~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 227 AGGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp SSEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESECTSSECTTTEEEEEEE
T ss_pred ccEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeCcccccCCCCeEEEEe
Confidence 455678999999999999999 33321 11 5555666777777777664
No 229
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=31.83 E-value=47 Score=33.78 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
+.++ + .+++|+.|..|++|++||-+=
T Consensus 52 ~~~i-~-~~~dG~~v~~g~~i~~i~G~~ 77 (302)
T cd01571 52 PVKV-Y-ALPEGTIFNPKEPVLRIEGPY 77 (302)
T ss_pred CeEE-E-EeCCCCEECCCCcEEEEEeCH
Confidence 4455 3 478888888888888887653
No 230
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=31.13 E-value=20 Score=37.19 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.0
Q ss_pred cCCcEEEEEccceeccCCCeecCCCEEEEEecCC
Q 012864 120 MDEPIAQIETDKLIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 120 ~gd~l~evetdKi~~~~G~~v~vG~~l~~i~~~~ 153 (455)
-||-|+||+--+|+++|||+|..=++||.+..+.
T Consensus 72 iGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDK 105 (474)
T KOG0558|consen 72 IGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDK 105 (474)
T ss_pred ccccceeeeeeeehhhcCCcHHHhcchhhccccc
Confidence 4788999999999999999999999999886543
No 231
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=29.65 E-value=47 Score=31.03 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.8
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEecCCCEEeCCCEEEEEcH
Confidence 88999999999999999974
No 232
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=29.52 E-value=61 Score=36.09 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=30.7
Q ss_pred eecCCCeeecCCcEEEEEccc-----eeccCC-----------CeecCCCEEEEEecCC
Q 012864 111 LKQPGDRVEMDEPIAQIETDK-----LIAKEG-----------ETVEPGAKIAVISKSG 153 (455)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK-----i~~~~G-----------~~v~vG~~l~~i~~~~ 153 (455)
.+|+||.|..||++.+|+-.. |+++.+ -...+.++|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~~~g~ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIAPAGNYTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEccCCCceeeeEEEEEeeCC
Confidence 588899999999999876433 555443 1356678888888633
No 233
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=66 Score=27.64 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=8.8
Q ss_pred ceeccCCCeecCCCEEEE
Q 012864 131 KLIAKEGETVEPGAKIAV 148 (455)
Q Consensus 131 Ki~~~~G~~v~vG~~l~~ 148 (455)
|+-+++|++|...++|+.
T Consensus 24 kl~~e~g~~v~f~~VL~v 41 (103)
T COG0261 24 KLDAEPGDKVEFDEVLMV 41 (103)
T ss_pred EcCCCCCCEEEEEEEEEE
Confidence 444455555555444444
No 234
>PRK12784 hypothetical protein; Provisional
Probab=29.00 E-value=76 Score=25.96 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=30.8
Q ss_pred CCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 87 ~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+...+++| |- .|.|....|.+||.|..+-.|+.+|-|-
T Consensus 40 dg~le~v~v---Gi---SG~I~~v~Ve~Gq~i~~dtlL~~~edDl 78 (84)
T PRK12784 40 NGELEKVAV---GI---SGNIRLVNVVVGQQIHTDTLLVRLEDDL 78 (84)
T ss_pred CCcEEEEEE---ee---eeeEEEEEeecCceecCCcEEEEEeece
Confidence 345555654 32 4788888999999999999999999884
No 235
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=28.80 E-value=38 Score=36.35 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=21.2
Q ss_pred eeccCCCeecCCCEEEEEecCCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
|+.+|||.+..|++|+.||++-.
T Consensus 58 W~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 58 WKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred EeeccCCccCCCceEEEEecccc
Confidence 99999999999999999998654
No 236
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=28.75 E-value=36 Score=36.40 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=22.7
Q ss_pred EEEeecCCCeeecCCcEEEEEccc---eeccC
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK---LIAKE 136 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK---i~~~~ 136 (455)
.+-+|++||+|+.||+|++-+..- ++...
T Consensus 43 ~~~~V~~Gd~V~~Gq~i~~~~~~~~~~~ha~v 74 (435)
T TIGR01945 43 AEPIVKVGDKVLKGQKIAKADGFVSAPIHAPT 74 (435)
T ss_pred CceeeCCCCEECCCCEeccCCCcceeeeecCC
Confidence 456999999999999999985533 55553
No 237
>cd04457 S1_S28E S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.
Probab=28.70 E-value=72 Score=24.72 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=37.2
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc---eeccCCCeecCCCEEEEEecCCC
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK---LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK---i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
++|.+.+=.-|-.=+..|+-|++-.|| |.-+.---|.+||.|...|++-|
T Consensus 3 A~V~kvlGRtG~~G~~tQVrv~~l~d~~r~i~RNVKGPVr~GDIl~L~EteRE 55 (60)
T cd04457 3 AEVIKVLGRTGSRGEVTQVRVEFMDDKGRSIIRNVKGPVREGDILMLLETERE 55 (60)
T ss_pred eEEEEEeccccCcCcEEEEEEEEeeCCCcEEEEeccCCcccCcEEeehhhhhh
Confidence 456666666777777777777777788 77777778888998888877654
No 238
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.08 E-value=57 Score=29.46 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=21.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-||-++.-....|+.|.+||+++-|.|-|
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRk 126 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRK 126 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecc
Confidence 35666677777777777777777777777
No 239
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=28.05 E-value=1.3e+02 Score=28.71 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=33.1
Q ss_pred eEEEEEEeecCCCeeec---------CCcEEEEEccc------------------eeccCCCeecCCCEEEEEecC
Q 012864 104 DGTLAKFLKQPGDRVEM---------DEPIAQIETDK------------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~---------gd~l~evetdK------------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
+|+|.++...+|+.... .-.++.+||++ ..+++|+.++.|+.++.+.--
T Consensus 99 ~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 99 SGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIVCYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred cCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEEEeCCCCCEEccCcEEeEEecC
Confidence 56666666666663332 22445666653 356889999999999999754
No 240
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=27.65 E-value=42 Score=35.16 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+.+++||.|+.|++|+.|+..+
T Consensus 79 v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 79 RNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred EEcCCCCEecCCCEEEEECCHH
Confidence 8999999999999999997653
No 241
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=26.90 E-value=60 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=26.9
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhcCh
Q 012864 420 IALTYDHRLIDGREAVFFLRRIKDIVEDP 448 (455)
Q Consensus 420 lslt~DHRviDGa~aa~Fl~~lk~~LE~P 448 (455)
.++.+|-|+.++.+..++.+++++++++-
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999863
No 242
>PRK02693 apocytochrome f; Reviewed
Probab=26.47 E-value=94 Score=31.36 Aligned_cols=16 Identities=56% Similarity=0.897 Sum_probs=13.0
Q ss_pred eeccCCCeecCCCEEE
Q 012864 132 LIAKEGETVEPGAKIA 147 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~ 147 (455)
++++|||.|+.|++|-
T Consensus 240 liV~eG~~v~~dqpLT 255 (312)
T PRK02693 240 LIVKEGDTVEAGDPLT 255 (312)
T ss_pred EEEecCcEEecCCccc
Confidence 7888888888888763
No 243
>CHL00037 petA cytochrome f
Probab=25.25 E-value=93 Score=31.66 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=25.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE-Eccc-------------eeccCCCeecCCCEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI-ETDK-------------LIAKEGETVEPGAKIA 147 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev-etdK-------------i~~~~G~~v~vG~~l~ 147 (455)
..|+|.+...++ +|.-...| +|+. +++++||.|++|++|-
T Consensus 210 ~~G~I~~I~~~e-----kGg~~vti~~t~~G~~v~~~iP~Gp~LiVs~G~~v~~~qpLT 263 (320)
T CHL00037 210 AAGIVSKILRKE-----KGGYEITIVDTSDGRQVVDIIPPGPELLVSEGESIKLDQPLT 263 (320)
T ss_pred cCcEEEEEEEcC-----CCcEEEEEEecCCCCEEEEeeCCCCeEEEecCceEecCCccc
Confidence 456676666543 34444444 3333 8888888888888874
No 244
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=24.85 E-value=1.6e+02 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.2
Q ss_pred eeccCCCeecCCCEEEEEecCCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
.+.++|+.|..|++|+.|+....
T Consensus 35 ~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 35 ELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred EecCCCCEEeCCCEEEEEEEccE
Confidence 45567999999999999987654
No 245
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=24.56 E-value=64 Score=31.59 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.9
Q ss_pred CCeeecCCcEE----------EEEccc----eeccCCCeecCCCEEEE
Q 012864 115 GDRVEMDEPIA----------QIETDK----LIAKEGETVEPGAKIAV 148 (455)
Q Consensus 115 Gd~V~~gd~l~----------evetdK----i~~~~G~~v~vG~~l~~ 148 (455)
|+.|++||.|- -.|-|+ +.+++|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fGStVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELGSTVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCCCeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 88899888653 445544 55777888888887753
No 246
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=23.96 E-value=28 Score=32.99 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=16.8
Q ss_pred EEeecCCCeeecCCcEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQ 126 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~e 126 (455)
+|.+++||+|+.||.|++
T Consensus 185 ~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 185 EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred ccccCCCCEEEeeeEEeC
Confidence 999999999999999874
No 247
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=23.85 E-value=70 Score=33.42 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=33.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEE----------EEccc---eeccCCCeecCCCEEEEEec
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQ----------IETDK---LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~e----------vetdK---i~~~~G~~v~vG~~l~~i~~ 151 (455)
++.+..|.-.++..|++||.+-. .|-++ ..+++|+.|++|+.|+.+..
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~~~~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKKNFSWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCCcCCcccCCCCEEEeeeeccccCC
Confidence 44566676666778888886543 44444 66788999999999987644
No 248
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=22.91 E-value=79 Score=31.39 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=6.4
Q ss_pred ccCCCeecCCCEEE
Q 012864 134 AKEGETVEPGAKIA 147 (455)
Q Consensus 134 ~~~G~~v~vG~~l~ 147 (455)
+++|+.|..|+.|+
T Consensus 243 ~~~g~~V~~Ge~ig 256 (259)
T PRK03140 243 LKSGQEVRLGEKIG 256 (259)
T ss_pred hcCCCEEEcChhhc
Confidence 34444444444443
No 249
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=22.23 E-value=61 Score=36.11 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred ceEEEEEEeecCCCeeecCCcE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPI 124 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l 124 (455)
..|+|.++++++||.|+.||+|
T Consensus 561 ~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 561 AAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCeEEEEEEeCCCCEeCCCCCC
Confidence 5899999999999999999986
No 250
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=21.73 E-value=1.3e+02 Score=36.88 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.2
Q ss_pred EeecCCCeeecCCcEEEEEcc
Q 012864 110 FLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetd 130 (455)
.||+.|+.|+.+|+|||+-+.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~ 425 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAG 425 (1331)
T ss_pred EEEECCcEEecCcEEEEeecC
Confidence 589999999999999999873
No 251
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.80 E-value=1.2e+02 Score=29.34 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=47.5
Q ss_pred EEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc--------------------------ee--ccCCCeecCCC
Q 012864 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------LI--AKEGETVEPGA 144 (455)
Q Consensus 93 i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK--------------------------i~--~~~G~~v~vG~ 144 (455)
+.-+.+||+++---|.+-.+..||.+.-||.|+||---- ++ |=++-.|..|+
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL~~G~v~~gD 155 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVLEEGKVRAGD 155 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEcccceecCCC
Confidence 455678999998889999999999999999999996543 22 22445788888
Q ss_pred EEEEEecCC
Q 012864 145 KIAVISKSG 153 (455)
Q Consensus 145 ~l~~i~~~~ 153 (455)
+|-.+....
T Consensus 156 ~l~l~~r~~ 164 (210)
T COG2258 156 PLKLIPRPS 164 (210)
T ss_pred ceEEecCCC
Confidence 888876544
No 252
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=20.28 E-value=75 Score=31.31 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.9
Q ss_pred eeccCCCeecCCCEEEEEecC
Q 012864 132 LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~ 152 (455)
+++++||.|+.|++|+.++..
T Consensus 80 i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 80 ILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred EEccCCCeecCCCEEEEECCc
Confidence 999999999999999999873
No 253
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=20.27 E-value=2.2e+02 Score=26.80 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=17.5
Q ss_pred eeccCCCeecCCCEEEEEecC
Q 012864 132 LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~ 152 (455)
..+++|+.++.|+.++.+.--
T Consensus 134 ~~~~~g~~v~kGeeiG~f~fG 154 (189)
T TIGR00164 134 CYVKEGEKVSRGQRIGMIRFG 154 (189)
T ss_pred EecCCCCEEecCcEEEEEecC
Confidence 356889999999999999754
No 254
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=20.23 E-value=1.3e+02 Score=29.34 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=47.8
Q ss_pred EEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc----------------------------eeccCCCeecCC
Q 012864 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK----------------------------LIAKEGETVEPG 143 (455)
Q Consensus 92 ~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK----------------------------i~~~~G~~v~vG 143 (455)
.+....+||+++=.-+.+--+-.||..+-|+.++||---- .-|=++-.|..|
T Consensus 78 ~l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL~~G~V~~G 157 (223)
T PRK11536 78 LFVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVIAPGKVSAD 157 (223)
T ss_pred ccCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEECCcEEcCC
Confidence 3556689999888888888999999999999999986433 333355578889
Q ss_pred CEEEEEecC
Q 012864 144 AKIAVISKS 152 (455)
Q Consensus 144 ~~l~~i~~~ 152 (455)
+.|-.++..
T Consensus 158 D~v~l~~r~ 166 (223)
T PRK11536 158 APLELVSRV 166 (223)
T ss_pred CEEEEEeCC
Confidence 999888764
Done!