Query 012864
Match_columns 455
No_of_seqs 201 out of 1536
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 2.4E-83 8.2E-88 669.3 1.2 366 89-455 1-428 (428)
2 1scz_A E2, dihydrolipoamide su 100.0 1.6E-66 5.4E-71 502.7 25.8 230 226-455 4-233 (233)
3 3mae_A 2-oxoisovalerate dehydr 100.0 1.4E-66 4.8E-71 508.8 25.4 231 223-453 15-245 (256)
4 3l60_A Branched-chain alpha-ke 100.0 4.3E-65 1.5E-69 496.8 26.5 223 227-455 16-242 (250)
5 1dpb_A Dihydrolipoyl-transacet 100.0 2.1E-64 7.1E-69 490.7 27.9 227 226-453 15-243 (243)
6 2ii3_A Lipoamide acyltransfera 100.0 8.6E-64 3E-68 491.0 26.1 229 225-455 30-261 (262)
7 3rqc_A Probable lipoamide acyl 100.0 3.7E-63 1.3E-67 476.5 20.6 218 225-455 5-224 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 1.7E-63 5.7E-68 483.4 14.4 227 225-453 11-239 (239)
9 2xt6_A 2-oxoglutarate decarbox 100.0 3.6E-50 1.2E-54 458.7 17.7 210 241-451 1-225 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 4.6E-45 1.6E-49 349.6 24.1 200 228-449 10-216 (219)
11 3cla_A Type III chloramphenico 100.0 2.5E-44 8.5E-49 343.2 24.0 182 247-447 23-210 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 3.3E-42 1.1E-46 329.3 22.6 180 247-445 25-216 (217)
13 1y8o_B Dihydrolipoyllysine-res 99.6 5.2E-15 1.8E-19 129.8 10.1 71 85-155 22-108 (128)
14 2dne_A Dihydrolipoyllysine-res 99.6 2.5E-15 8.4E-20 128.2 7.7 69 86-154 3-87 (108)
15 2dnc_A Pyruvate dehydrogenase 99.6 6.8E-15 2.3E-19 123.3 8.7 71 85-155 2-88 (98)
16 3crk_C Dihydrolipoyllysine-res 99.5 2.1E-14 7.2E-19 117.4 9.6 67 88-154 3-85 (87)
17 1k8m_A E2 component of branche 99.5 5.5E-14 1.9E-18 116.5 9.0 65 89-153 3-82 (93)
18 1zy8_K Pyruvate dehydrogenase 99.5 3.2E-15 1.1E-19 143.5 0.0 66 88-153 1-82 (229)
19 1ghj_A E2, E2, the dihydrolipo 99.4 3.3E-13 1.1E-17 107.9 6.8 62 91-152 2-78 (79)
20 1pmr_A Dihydrolipoyl succinylt 99.4 5E-14 1.7E-18 113.2 1.7 62 90-151 2-78 (80)
21 1qjo_A Dihydrolipoamide acetyl 99.3 1.2E-12 4.2E-17 104.7 7.0 63 89-153 1-78 (80)
22 2l5t_A Lipoamide acyltransfera 99.3 1.4E-12 4.9E-17 103.6 7.2 61 91-151 2-77 (77)
23 1iyu_A E2P, dihydrolipoamide a 99.2 1.7E-11 5.7E-16 98.0 7.9 60 91-153 2-76 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.2 1E-11 3.5E-16 99.6 5.3 62 90-152 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.0 3.6E-11 1.2E-15 97.5 0.1 58 90-153 2-74 (85)
26 2jku_A Propionyl-COA carboxyla 98.7 6.9E-09 2.4E-13 85.8 3.3 63 88-150 13-94 (94)
27 1z6h_A Biotin/lipoyl attachmen 98.7 3E-08 1E-12 77.0 6.4 50 103-152 6-70 (72)
28 2kcc_A Acetyl-COA carboxylase 98.6 1.8E-08 6E-13 81.5 4.1 51 103-154 12-77 (84)
29 2dn8_A Acetyl-COA carboxylase 98.6 7.3E-08 2.5E-12 80.4 6.4 51 103-153 24-88 (100)
30 2d5d_A Methylmalonyl-COA decar 98.5 1.4E-07 4.9E-12 73.3 6.5 48 103-150 12-74 (74)
31 1dcz_A Transcarboxylase 1.3S s 98.4 2.8E-07 9.4E-12 72.5 5.5 48 103-150 15-77 (77)
32 2ejm_A Methylcrotonoyl-COA car 98.4 3.2E-07 1.1E-11 76.3 5.9 52 103-154 21-87 (99)
33 1bdo_A Acetyl-COA carboxylase; 98.4 1.9E-07 6.5E-12 74.3 4.3 42 109-150 24-80 (80)
34 3n6r_A Propionyl-COA carboxyla 98.3 5.4E-07 1.8E-11 99.0 6.5 47 104-150 620-681 (681)
35 3u9t_A MCC alpha, methylcroton 98.3 1.2E-07 4E-12 104.2 0.0 49 104-152 610-673 (675)
36 3va7_A KLLA0E08119P; carboxyla 98.2 9.3E-07 3.2E-11 102.7 6.4 45 105-149 1176-1235(1236)
37 3hbl_A Pyruvate carboxylase; T 98.2 1E-06 3.6E-11 101.8 6.5 50 104-153 1085-1149(1150)
38 3bg3_A Pyruvate carboxylase, m 97.8 8.2E-06 2.8E-10 89.8 3.8 47 104-150 657-718 (718)
39 2qf7_A Pyruvate carboxylase pr 97.7 2.1E-05 7.3E-10 91.0 5.2 47 104-150 1103-1164(1165)
40 2k32_A A; NMR {Campylobacter j 97.7 5.1E-05 1.7E-09 64.3 6.1 52 103-154 8-104 (116)
41 1zko_A Glycine cleavage system 96.7 0.00092 3.2E-08 58.8 3.9 58 91-153 37-116 (136)
42 2f1m_A Acriflavine resistance 95.7 0.0071 2.4E-07 58.2 4.2 28 103-130 29-56 (277)
43 1hpc_A H protein of the glycin 95.4 0.0027 9.4E-08 55.4 0.0 36 91-131 28-63 (131)
44 3a7l_A H-protein, glycine clea 95.4 0.0027 9.1E-08 55.2 -0.1 36 91-131 29-64 (128)
45 1onl_A Glycine cleavage system 95.3 0.0028 9.7E-08 55.1 -0.0 36 91-131 28-63 (128)
46 3ne5_B Cation efflux system pr 95.0 0.022 7.6E-07 58.4 5.5 27 103-129 128-155 (413)
47 3fpp_A Macrolide-specific effl 94.2 0.042 1.4E-06 54.3 5.1 28 103-130 38-65 (341)
48 1vf7_A Multidrug resistance pr 94.1 0.026 9E-07 56.8 3.5 28 103-130 50-77 (369)
49 3lnn_A Membrane fusion protein 94.1 0.042 1.4E-06 54.7 4.8 28 103-130 64-91 (359)
50 2l5t_A Lipoamide acyltransfera 92.4 0.11 3.6E-06 40.2 3.8 27 103-129 51-77 (77)
51 1ghj_A E2, E2, the dihydrolipo 91.0 0.16 5.3E-06 39.5 3.4 28 103-130 51-78 (79)
52 1z6h_A Biotin/lipoyl attachmen 90.7 0.16 5.5E-06 38.4 3.1 28 103-130 43-70 (72)
53 1qjo_A Dihydrolipoamide acetyl 90.6 0.15 5.2E-06 39.5 3.0 35 90-130 43-77 (80)
54 3crk_C Dihydrolipoyllysine-res 90.0 0.25 8.4E-06 39.2 3.8 28 103-130 55-83 (87)
55 1bdo_A Acetyl-COA carboxylase; 89.8 0.22 7.5E-06 38.6 3.3 26 103-128 55-80 (80)
56 1k8m_A E2 component of branche 89.8 0.26 9E-06 39.8 3.8 28 103-130 54-81 (93)
57 1iyu_A E2P, dihydrolipoamide a 89.5 0.24 8.3E-06 38.3 3.3 28 103-130 48-75 (79)
58 2xha_A NUSG, transcription ant 89.4 0.2 6.8E-06 46.3 3.1 39 109-147 22-98 (193)
59 2gpr_A Glucose-permease IIA co 89.4 0.29 9.8E-06 43.7 4.1 26 106-131 89-114 (154)
60 3klr_A Glycine cleavage system 88.7 0.16 5.6E-06 43.7 1.9 19 113-131 41-59 (125)
61 3our_B EIIA, phosphotransferas 88.3 0.29 9.8E-06 44.8 3.3 24 108-131 118-141 (183)
62 3mxu_A Glycine cleavage system 87.9 0.17 5.8E-06 44.6 1.5 23 113-135 63-89 (143)
63 1dcz_A Transcarboxylase 1.3S s 87.1 0.38 1.3E-05 36.8 2.9 26 103-128 52-77 (77)
64 2dnc_A Pyruvate dehydrogenase 86.7 0.39 1.3E-05 39.2 3.0 28 103-130 57-85 (98)
65 1y8o_B Dihydrolipoyllysine-res 86.7 0.49 1.7E-05 40.8 3.7 28 103-130 77-105 (128)
66 2d5d_A Methylmalonyl-COA decar 86.4 0.49 1.7E-05 35.7 3.2 26 103-128 49-74 (74)
67 4dk0_A Putative MACA; alpha-ha 85.9 0.13 4.6E-06 51.1 -0.3 29 103-131 39-67 (369)
68 2k7v_A Dihydrolipoyllysine-res 85.6 0.28 9.4E-06 38.7 1.5 36 89-130 38-73 (85)
69 3tzu_A GCVH, glycine cleavage 85.5 0.28 9.7E-06 42.9 1.6 20 112-131 57-76 (137)
70 3hgb_A Glycine cleavage system 85.1 0.29 9.9E-06 43.7 1.5 33 112-144 67-104 (155)
71 2dne_A Dihydrolipoyllysine-res 84.7 0.56 1.9E-05 39.0 3.0 29 103-131 57-86 (108)
72 3na6_A Succinylglutamate desuc 84.1 1.5 5.1E-05 43.6 6.3 49 104-152 264-329 (331)
73 3cdx_A Succinylglutamatedesucc 83.4 1.6 5.3E-05 43.8 6.2 48 106-153 276-340 (354)
74 2auk_A DNA-directed RNA polyme 83.4 1.2 4.3E-05 40.8 5.0 19 109-127 63-81 (190)
75 1ax3_A Iiaglc, glucose permeas 83.2 0.58 2E-05 42.0 2.6 27 106-132 94-120 (162)
76 2xhc_A Transcription antitermi 83.2 0.46 1.6E-05 47.9 2.2 39 109-147 62-138 (352)
77 2kcc_A Acetyl-COA carboxylase 82.1 0.7 2.4E-05 36.3 2.5 28 103-131 49-76 (84)
78 3fmc_A Putative succinylglutam 82.0 1.9 6.4E-05 43.6 6.2 49 104-152 297-364 (368)
79 2jku_A Propionyl-COA carboxyla 81.3 0.3 1E-05 39.4 0.0 26 103-128 69-94 (94)
80 1pmr_A Dihydrolipoyl succinylt 80.1 0.22 7.5E-06 38.8 -1.2 27 103-129 52-78 (80)
81 2dn8_A Acetyl-COA carboxylase 79.2 1.2 4.2E-05 36.1 3.1 28 103-131 61-88 (100)
82 1f3z_A EIIA-GLC, glucose-speci 78.6 1.8 6.2E-05 38.7 4.2 24 108-131 96-119 (161)
83 2ejm_A Methylcrotonoyl-COA car 77.5 1.3 4.5E-05 35.9 2.7 37 90-132 51-87 (99)
84 3fot_A 15-O-acetyltransferase; 76.3 26 0.00089 36.8 13.1 32 415-446 484-515 (519)
85 2xha_A NUSG, transcription ant 76.3 1.2 4E-05 41.2 2.3 14 112-125 85-98 (193)
86 1gjx_A Pyruvate dehydrogenase; 75.5 0.4 1.4E-05 37.2 -0.9 27 104-130 52-78 (81)
87 3dva_I Dihydrolipoyllysine-res 72.3 0.76 2.6E-05 47.4 0.0 29 103-131 52-80 (428)
88 3n6r_A Propionyl-COA carboxyla 69.0 2.5 8.7E-05 46.0 3.2 26 103-128 656-681 (681)
89 1qpo_A Quinolinate acid phosph 67.3 3.2 0.00011 40.4 3.3 25 107-131 72-96 (284)
90 1x1o_A Nicotinate-nucleotide p 66.5 3.1 0.00011 40.6 2.9 24 108-131 74-97 (286)
91 1o4u_A Type II quinolic acid p 66.0 2.9 9.9E-05 40.8 2.6 24 108-131 73-96 (285)
92 3u9t_A MCC alpha, methylcroton 66.0 1.2 4.3E-05 48.4 0.0 28 103-130 646-673 (675)
93 3tqv_A Nicotinate-nucleotide p 65.6 3.3 0.00011 40.5 2.9 24 108-131 77-100 (287)
94 2b7n_A Probable nicotinate-nuc 65.1 3.8 0.00013 39.6 3.3 24 108-131 60-83 (273)
95 3l0g_A Nicotinate-nucleotide p 64.9 3.6 0.00012 40.5 3.0 24 108-131 86-109 (300)
96 3gnn_A Nicotinate-nucleotide p 64.0 3.7 0.00012 40.4 2.9 24 108-131 88-111 (298)
97 3paj_A Nicotinate-nucleotide p 63.1 3.9 0.00013 40.6 2.9 24 108-131 110-133 (320)
98 1qap_A Quinolinic acid phospho 62.5 4.1 0.00014 39.9 3.0 24 108-131 87-110 (296)
99 3hbl_A Pyruvate carboxylase; T 61.9 3.8 0.00013 47.5 3.0 28 103-130 1121-1148(1150)
100 2xhc_A Transcription antitermi 59.8 4.1 0.00014 40.9 2.5 31 112-145 125-156 (352)
101 3h5q_A PYNP, pyrimidine-nucleo 59.4 4.4 0.00015 41.9 2.7 27 102-128 375-401 (436)
102 2qj8_A MLR6093 protein; struct 59.0 12 0.00041 36.8 5.7 48 104-151 264-328 (332)
103 3lu0_D DNA-directed RNA polyme 58.4 5.5 0.00019 46.4 3.4 19 109-127 1002-1020(1407)
104 2jbm_A Nicotinate-nucleotide p 58.3 4.5 0.00015 39.6 2.4 24 108-131 73-96 (299)
105 1brw_A PYNP, protein (pyrimidi 58.2 5.3 0.00018 41.2 3.0 23 132-154 380-402 (433)
106 2dsj_A Pyrimidine-nucleoside ( 58.2 5.3 0.00018 41.1 3.0 23 132-154 372-394 (423)
107 1zy8_K Pyruvate dehydrogenase 58.1 2.1 7.2E-05 40.4 0.0 28 103-130 53-81 (229)
108 2k32_A A; NMR {Campylobacter j 56.8 4.1 0.00014 33.5 1.6 36 90-131 67-103 (116)
109 1uou_A Thymidine phosphorylase 55.3 6.4 0.00022 41.1 3.1 21 132-152 415-435 (474)
110 3va7_A KLLA0E08119P; carboxyla 52.2 7.9 0.00027 45.1 3.5 25 103-127 1211-1235(1236)
111 2tpt_A Thymidine phosphorylase 50.3 5.5 0.00019 41.2 1.6 21 132-152 385-405 (440)
112 2f1m_A Acriflavine resistance 49.7 8.3 0.00028 36.3 2.7 22 132-153 36-57 (277)
113 2e1v_A Acyl transferase; BAHD 49.4 14 0.00048 37.6 4.5 29 418-446 162-190 (454)
114 2rkv_A Trichothecene 3-O-acety 49.0 14 0.00046 37.5 4.3 30 418-447 148-177 (451)
115 2bgh_A Vinorine synthase; VS, 48.0 14 0.00049 37.2 4.3 29 418-446 152-180 (421)
116 2xr7_A Malonyltransferase; xen 48.0 14 0.00047 37.6 4.2 29 418-446 157-185 (453)
117 4g22_A Hydroxycinnamoyl-COA sh 47.8 15 0.00052 37.2 4.5 29 418-446 150-178 (439)
118 3d4r_A Domain of unknown funct 46.0 21 0.00071 32.0 4.4 37 118-154 96-136 (169)
119 3it5_A Protease LASA; metallop 45.9 7.6 0.00026 35.2 1.7 21 131-151 84-104 (182)
120 3c2e_A Nicotinate-nucleotide p 45.3 8.6 0.0003 37.5 2.1 24 108-131 69-98 (294)
121 3d4r_A Domain of unknown funct 43.9 10 0.00036 33.9 2.2 28 104-131 108-135 (169)
122 2gpr_A Glucose-permease IIA co 42.9 14 0.00049 32.6 2.9 20 132-151 93-112 (154)
123 3ne5_B Cation efflux system pr 40.2 12 0.0004 38.0 2.2 54 90-149 207-267 (413)
124 1zko_A Glycine cleavage system 40.1 33 0.0011 29.5 4.8 19 135-153 54-72 (136)
125 1f3z_A EIIA-GLC, glucose-speci 39.1 20 0.00067 31.9 3.2 20 132-151 98-117 (161)
126 2lmc_B DNA-directed RNA polyme 38.2 6.2 0.00021 31.4 -0.2 16 111-126 68-83 (84)
127 3lnn_A Membrane fusion protein 37.7 18 0.00063 35.2 3.1 53 90-148 170-230 (359)
128 3tuf_B Stage II sporulation pr 37.2 14 0.00048 35.1 2.1 22 131-152 134-155 (245)
129 2hsi_A Putative peptidase M23; 36.8 14 0.00049 35.8 2.1 27 128-154 228-254 (282)
130 4hvm_A Tlmii; PSI-biology, mid 36.7 3.3E+02 0.011 27.0 14.2 28 419-446 135-162 (493)
131 1q9j_A PAPA5, polyketide synth 36.6 2.7E+02 0.0094 26.6 11.6 159 253-446 213-411 (422)
132 1l5a_A Amide synthase, VIBH; n 36.5 3E+02 0.01 26.6 15.3 142 281-446 231-402 (436)
133 1qwy_A Peptidoglycan hydrolase 36.1 15 0.00052 35.8 2.1 26 129-154 236-261 (291)
134 1onl_A Glycine cleavage system 34.7 24 0.00082 30.0 3.0 39 109-153 14-63 (128)
135 3nyy_A Putative glycyl-glycine 32.4 19 0.00063 34.3 2.1 27 128-154 177-204 (252)
136 3fpp_A Macrolide-specific effl 31.7 28 0.00094 33.7 3.3 51 91-147 154-214 (341)
137 1ci3_M Protein (cytochrome F); 31.6 44 0.0015 31.4 4.3 39 103-146 176-227 (249)
138 1ax3_A Iiaglc, glucose permeas 31.2 20 0.0007 31.8 2.0 20 132-151 98-117 (162)
139 1hpc_A H protein of the glycin 31.1 29 0.001 29.6 2.9 20 134-153 44-63 (131)
140 3a7l_A H-protein, glycine clea 29.5 37 0.0013 28.8 3.3 20 134-153 45-64 (128)
141 3it5_A Protease LASA; metallop 29.2 41 0.0014 30.3 3.7 25 105-129 80-104 (182)
142 3our_B EIIA, phosphotransferas 28.9 42 0.0014 30.5 3.7 20 132-151 120-139 (183)
143 1vf7_A Multidrug resistance pr 28.4 22 0.00076 35.1 1.9 22 132-153 57-78 (369)
144 4dk0_A Putative MACA; alpha-ha 28.2 19 0.00065 35.2 1.4 22 132-153 46-67 (369)
145 3r8s_R 50S ribosomal protein L 27.6 37 0.0013 27.9 2.8 32 109-149 11-42 (103)
146 2qf7_A Pyruvate carboxylase pr 27.3 14 0.0005 42.7 0.4 25 104-128 1140-1164(1165)
147 2gu1_A Zinc peptidase; alpha/b 27.2 25 0.00087 34.9 2.1 27 128-154 280-306 (361)
148 3bg3_A Pyruvate carboxylase, m 26.6 8.1 0.00028 42.4 -1.8 26 103-128 693-718 (718)
149 2vsq_A Surfactin synthetase su 26.4 3.4E+02 0.012 31.3 11.7 149 281-446 251-426 (1304)
150 1hcz_A Cytochrome F; electron 26.1 60 0.0021 30.5 4.2 40 103-147 175-228 (252)
151 3csq_A Morphogenesis protein 1 25.7 17 0.00059 35.9 0.6 19 134-152 253-271 (334)
152 1e2w_A Cytochrome F; electron 25.5 79 0.0027 29.7 4.9 42 103-147 175-229 (251)
153 2bco_A Succinylglutamate desuc 23.6 52 0.0018 32.5 3.6 41 111-153 280-330 (350)
154 2jxm_B Cytochrome F; copper, e 23.6 59 0.002 30.4 3.7 39 103-147 177-228 (249)
155 1q90_A Apocytochrome F; membra 21.6 90 0.0031 29.9 4.5 41 103-146 175-228 (292)
156 3u5c_c S33, YS27, 40S ribosoma 21.6 77 0.0026 24.0 3.3 53 102-154 7-62 (67)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=2.4e-83 Score=669.31 Aligned_cols=366 Identities=31% Similarity=0.518 Sum_probs=15.0
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|.++|+||+||++|+||+|++|+|++||.|++||+||+||||| |++++||.|++|++|+.|++++
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 4678999999999999999999999999999999999999999 8999999999999999998765
Q ss_pred Ccccccc--c--cc---ccC-CCCCCCC---CCCC-----C-CCCCCCcccCccccCC-----------CCCCCCCCCCC
Q 012864 154 EGVAQAA--S--AE---KAA-AQPPPAE---EKPS-----A-EKQTPESEAAPAVKDK-----------TPSEPPPTAKK 205 (455)
Q Consensus 154 ~~~~~~~--~--~~---~~~-~~~~~~~---~~~~-----~-~~~~~~~~~sPavr~~-----------~~s~~~~~~~~ 205 (455)
++..... + .. ..+ ..+++.+ +.+. . ......+.++|++|++ .++|+.++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k 160 (428)
T 3dva_I 81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK 160 (428)
T ss_dssp -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence 5322110 0 00 000 0000000 0000 0 0011235688999863 56777765432
Q ss_pred CCC---------CCCCCC----CCCCCC----CCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHH
Q 012864 206 PTS---------PPSKPM----ASEPQL----PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 268 (455)
Q Consensus 206 ~~~---------~~~~~~----~~~~~~----~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~ 268 (455)
... .++.+. ...+.. .....++++||+++||.||++|++||+++||||++.+||+|+|+++|+
T Consensus 161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk 240 (428)
T 3dva_I 161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK 240 (428)
T ss_dssp TTTTTTSCC-----------------------------------------------------------------------
T ss_pred HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence 211 000000 000000 011235789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHH
Q 012864 269 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE 346 (455)
Q Consensus 269 ~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa 346 (455)
++++.+ ++.|.|+||++||+||+++||++||+||++|++ ++|+++++||||+||++++||++|||+|+++++|.+|+
T Consensus 241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia 319 (428)
T 3dva_I 241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA 319 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHH
Confidence 998653 457999999999999999999999999999988 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecc
Q 012864 347 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDH 426 (455)
Q Consensus 347 ~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DH 426 (455)
++++++++++|+|+|.++|++||||||||+||+|+++|+||||+||+|||++|+++++|++.||++++|++|+|||+|||
T Consensus 320 ~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DH 399 (428)
T 3dva_I 320 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDH 399 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 427 RLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 427 RviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
|+|||+++++||++|+++||||+.|||++
T Consensus 400 RviDG~~aa~Fl~~lk~~Le~P~~lll~~ 428 (428)
T 3dva_I 400 RMIDGATAQKALNHIKRLLSDPELLLMEA 428 (428)
T ss_dssp -----------------------------
T ss_pred cccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999999999999874
No 2
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=1.6e-66 Score=502.68 Aligned_cols=230 Identities=60% Similarity=1.025 Sum_probs=223.7
Q ss_pred cceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEE
Q 012864 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 305 (455)
Q Consensus 226 ~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~ 305 (455)
++++|++++||+||++|++|++++||+|++.|+|+|+|+++|+++|+.+.++.|.|+|+++|++||+++||++||++|++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 45689999999999999999999999999999999999999999998766677999999999999999999999999999
Q ss_pred EeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCee
Q 012864 306 IDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLST 385 (455)
Q Consensus 306 l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~ 385 (455)
|+++++++++++|||+||++++||++|||+|++++|+.||+++++++++++++|+|.++|++||||||||+||+|+.+|+
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~t 163 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMST 163 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCC
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 386 PIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 386 Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
|||||||+|||++|+++++|+++||+++++++|+||||||||++||+++|+||++|+++||+|+.||+++
T Consensus 164 pIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~ 233 (233)
T 1scz_A 164 PIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 (233)
T ss_dssp CCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred cccCCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874
No 3
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-66 Score=508.78 Aligned_cols=231 Identities=37% Similarity=0.561 Sum_probs=223.8
Q ss_pred CCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcc
Q 012864 223 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 302 (455)
Q Consensus 223 ~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~l 302 (455)
...++++|++++||+||++|++|++++||+|++.|||+|+|+++|+++|+.+.++.|.|+|+++|++||+++||++||+|
T Consensus 15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~ 94 (256)
T 3mae_A 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL 94 (256)
T ss_dssp CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence 34568899999999999999999999999999999999999999999998776667999999999999999999999999
Q ss_pred cEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCC
Q 012864 303 NAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 382 (455)
Q Consensus 303 Na~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~ 382 (455)
|++|++++++++++||||+||++++||++|||+|+|++|+.||+++++++++++|+|+|.++|++||||||||+|++|++
T Consensus 95 Na~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~ 174 (256)
T 3mae_A 95 NSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSV 174 (256)
T ss_dssp SEEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCS
T ss_pred hhEEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 383 LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 383 ~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
+|+|||||||+|||++|+++++|++.+|+++++++|+||||||||++||+++|+||++|+++||||+.|..
T Consensus 175 ~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~ 245 (256)
T 3mae_A 175 QSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT 245 (256)
T ss_dssp EEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred ceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997654
No 4
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=4.3e-65 Score=496.76 Aligned_cols=223 Identities=30% Similarity=0.552 Sum_probs=215.4
Q ss_pred ceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEE
Q 012864 227 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI 306 (455)
Q Consensus 227 ~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l 306 (455)
++ |++++||+||++|++|++++||+|++.|||+|+|+++|+++| +.|.|+|+++|++||+++||++||++|++|
T Consensus 16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k-----~~~~kls~~~~iikAva~AL~~~P~~Na~~ 89 (250)
T 3l60_A 16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV-----SAAPEITPFALTLRLLVIALKHNVILNSTW 89 (250)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHT-----TTCTTCCHHHHHHHHHHHHHHHCGGGSEEE
T ss_pred CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHh-----hcCCCCCHHHHHHHHHHHHHHhCHHhhEEE
Confidence 44 999999999999999999999999999999999999999985 357899999999999999999999999999
Q ss_pred eC----CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCC
Q 012864 307 DG----DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 382 (455)
Q Consensus 307 ~~----~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~ 382 (455)
++ +++++++++|||+||++++||++|||+|+|++|+.||+++++++++++|+|+|.++|++||||||||+|++|++
T Consensus 90 ~~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~ 169 (250)
T 3l60_A 90 VDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVD 169 (250)
T ss_dssp ECTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCS
T ss_pred eccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcc
Confidence 75 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 383 LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 383 ~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
+|+|||||||+|||++|+++++|++++|+++++++|+||||||||++||+++|+||++|+++||||+.|+.++
T Consensus 170 ~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~~ 242 (250)
T 3l60_A 170 DGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242 (250)
T ss_dssp SCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTTC
T ss_pred eeEeeeCCCCceEEEecceEEEeEEECCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887654
No 5
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=2.1e-64 Score=490.74 Aligned_cols=227 Identities=37% Similarity=0.552 Sum_probs=218.9
Q ss_pred cceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEE
Q 012864 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 305 (455)
Q Consensus 226 ~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~ 305 (455)
.+++|++++||.||++|++||+++||+|++.|+|+|+|+++|+++|+.+. +.|.|+|+++|++||+++||++||++|++
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 46789999999999999999999999999999999999999999987543 56899999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCC
Q 012864 306 IDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 383 (455)
Q Consensus 306 l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~ 383 (455)
|++ ++++++++||||+||++++||++|||+|+|++|+.||+++++++++++|+|+|.++|++||||||||+||+|+++
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 173 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA 173 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence 986 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 384 STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 384 ~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
|+|||||||+|||++|+++++|++.||+++++++|+||||||||++||+++|+||++|+++||+|+.||+
T Consensus 174 ~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 174 FTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp CCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred eECccCCCCCeEEEccccEEEEEEECCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998775
No 6
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=8.6e-64 Score=490.99 Aligned_cols=229 Identities=33% Similarity=0.543 Sum_probs=219.0
Q ss_pred CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304 (455)
Q Consensus 225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa 304 (455)
.++++|++++||.||++|++|+ ++||||++.|||+|+|+++|+++|+. .++.|.|+|+++|++||+++||++||+||+
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~-~~~~g~kls~~~~~ikAva~Al~~~P~~Na 107 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPI-AFARGIKLSFMPFFLKAASLGLLQFPILNA 107 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhh-hhhccCCccHHHHHHHHHHHHHHhChHhhE
Confidence 4578999999999999999997 59999999999999999999999874 345789999999999999999999999999
Q ss_pred EEeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCC
Q 012864 305 VIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 382 (455)
Q Consensus 305 ~l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~ 382 (455)
+|++ +++++++++|||+||++++||++|||+|++++|+.||+++++++++++++|+|.++|++||||||||+||+|++
T Consensus 108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~ 187 (262)
T 2ii3_A 108 SVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGT 187 (262)
T ss_dssp EECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCS
T ss_pred EEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCcc
Confidence 9986 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCeEEEEecceeeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 383 LSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 383 ~~~Pii~~Pq~aIL~vG~i~~~pvv~-~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
+|+|||||||+|||++|+++++|++. ||+++++++|+||||||||++||+++|+||++|+++||||+.||+++
T Consensus 188 ~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~~ 261 (262)
T 2ii3_A 188 YAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 261 (262)
T ss_dssp CEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHC
T ss_pred ceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhhc
Confidence 99999999999999999999999997 78999999999999999999999999999999999999999988764
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=3.7e-63 Score=476.52 Aligned_cols=218 Identities=36% Similarity=0.596 Sum_probs=208.8
Q ss_pred CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304 (455)
Q Consensus 225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa 304 (455)
.++++|++++||+||++|++|++++||+|++.|||+|+|+++|+++|+ .|.|+|+++|++||+++||++||+||+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~-----~g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA-----RNRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 457899999999999999999999999999999999999999999864 388999999999999999999999999
Q ss_pred EEeCC--eEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCC
Q 012864 305 VIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 382 (455)
Q Consensus 305 ~l~~~--~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~ 382 (455)
+|+++ ++++++++|||+||++++||++|||+|+|++|+.||+++++++++++++|+|.++|++||||||||+|++|++
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~ 159 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGI 159 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCS
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCcc
Confidence 99887 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864 383 LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455 (455)
Q Consensus 383 ~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~ 455 (455)
+|+|||||||+|||++|+++++|+ +++|+|||+||||++||+++|+||++|+++||||+.||+++
T Consensus 160 ~~tpiin~pq~aIl~vG~~~~~p~--------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~ 224 (224)
T 3rqc_A 160 MSTPIINYPEVAILGVHRILEREG--------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224 (224)
T ss_dssp EEECCCCTTBSEEEEECCCEEETT--------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC--
T ss_pred ceEeccCCCCceEEEecccEEECC--------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 999999999999999999999875 89999999999999999999999999999999999999875
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-63 Score=483.41 Aligned_cols=227 Identities=28% Similarity=0.434 Sum_probs=217.6
Q ss_pred CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304 (455)
Q Consensus 225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa 304 (455)
.++++|++++||+||++|++||+++||+|++.|+|+|+|+++|+++|+.+. .+.|+|+++|++||+++||++||+||+
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~--~~~kls~~~~~ikAv~~Al~~~P~~Na 88 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE--GRSKISVNDFIIKASALACLKVPEANS 88 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHT--TSSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHhChHhhE
Confidence 456789999999999999999999999999999999999999999987532 236999999999999999999999999
Q ss_pred EEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCe
Q 012864 305 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS 384 (455)
Q Consensus 305 ~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~ 384 (455)
+|++++++++++||||+||++++||++|||+|+|++++.||+++++++++++|+|+|.++|++||||||||+||+|+++|
T Consensus 89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f 168 (239)
T 3b8k_A 89 SWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 168 (239)
T ss_dssp TSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred EEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeEEEEecceeeEEEE--eCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864 385 TPIINPPQSAILGMHSIVNRPMV--VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 453 (455)
Q Consensus 385 ~Pii~~Pq~aIL~vG~i~~~pvv--~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll 453 (455)
+|||||||+|||++|+++++|++ .||+++++++|+|||+||||++||+++|+||++|+++||||+.||+
T Consensus 169 tpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 169 SAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred ECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999 5889999999999999999999999999999999999999998775
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.6e-50 Score=458.69 Aligned_cols=210 Identities=23% Similarity=0.363 Sum_probs=178.3
Q ss_pred HHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCC----eEEEcCC
Q 012864 241 RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD----DIIYRDY 316 (455)
Q Consensus 241 ~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~----~i~~~~~ 316 (455)
+|++|+ ++||+|++.+||+|+|+++|+++|+.+.++.|.|+|+++|++||+++||++||++|++|+++ .++++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 588896 79999999999999999999999987666679999999999999999999999999999753 6999999
Q ss_pred ccEEEEEecC--CC---eEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCC
Q 012864 317 IDISFAVGTK--KG---LVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPP 391 (455)
Q Consensus 317 vnIgiAV~~~--~G---L~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~P 391 (455)
|||||||+++ +| |+||||+|++++||.||++++++|+++||+|+|+++|++||||||||+|++|+.+|+||||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp 159 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence 9999999997 66 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecceeeEEEEeC------CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhh
Q 012864 392 QSAILGMHSIVNRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 451 (455)
Q Consensus 392 q~aIL~vG~i~~~pvv~~------g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~l 451 (455)
|+|||++|+++++|++.+ |+++++++|+||||||||||||+++|+||+.|+++||+|+.|
T Consensus 160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999998865 689999999999999999999999999999999999999865
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=4.6e-45 Score=349.58 Aligned_cols=200 Identities=12% Similarity=0.153 Sum_probs=172.2
Q ss_pred eeeCchH-HHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEE
Q 012864 228 RVPMTRL-RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI 306 (455)
Q Consensus 228 ~vpls~~-rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l 306 (455)
.+.+..+ ||..-+.. ...++||+|++.|||+|+|+++|++. ++|+++|++||+++||++||++|++|
T Consensus 10 ~id~~~W~R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~Na~~ 77 (219)
T 1q23_A 10 TVDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAM 77 (219)
T ss_dssp ECCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSEEE
T ss_pred eECcccCCCHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhChHhhEEE
Confidence 3444544 34444444 33578999999999999999998642 78999999999999999999999999
Q ss_pred eCCeEEEcCCccEEEEE-ecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcC-CCCc-cccCCCcEEEecCCCCCCCC
Q 012864 307 DGDDIIYRDYIDISFAV-GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISI-DEMAGGTFTISNGGVYGSLL 383 (455)
Q Consensus 307 ~~~~i~~~~~vnIgiAV-~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g-~l~~-~dl~ggTftISNlG~~G~~~ 383 (455)
++++++++++||||+|| ++++||++||+.. +.+++.+|++++++++++||+| +|.+ +|+ ||||||||+|++|.+.
T Consensus 78 ~~~~i~~~~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~ 155 (219)
T 1q23_A 78 KDGELVIWDSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTS 155 (219)
T ss_dssp ETTEEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSE
T ss_pred ECCEEEEecccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccc
Confidence 99999999999999999 9999999999996 6789999999999999999998 6976 899 9999999999986544
Q ss_pred eeeecCCC-C--eEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChh
Q 012864 384 STPIINPP-Q--SAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 449 (455)
Q Consensus 384 ~~Pii~~P-q--~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~ 449 (455)
+.+.+++| + ++||++|+++++ +| +++|||||+||||++||+++|+||++|+++||+|.
T Consensus 156 i~~~~~~~~~~~~pIi~~G~~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~ 216 (219)
T 1q23_A 156 FDLNVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216 (219)
T ss_dssp EEEEESCCTTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCCCccceeEEEecccEEEE----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence 44444333 2 699999999876 55 79999999999999999999999999999999863
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=2.5e-44 Score=343.17 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=165.3
Q ss_pred cCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEE-ec
Q 012864 247 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-GT 325 (455)
Q Consensus 247 ~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV-~~ 325 (455)
.++||+|++.|+|+|+|+++|++ .++|++++++||+++||++||++|++|++++++++++||||+|| ++
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 46899999999999999999853 27899999999999999999999999999999999999999999 99
Q ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcC-CCCc-cccCCCcEEEecCCCCCCCCeeeecCCC---CeEEEEecc
Q 012864 326 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISI-DEMAGGTFTISNGGVYGSLLSTPIINPP---QSAILGMHS 400 (455)
Q Consensus 326 ~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g-~l~~-~dl~ggTftISNlG~~G~~~~~Pii~~P---q~aIL~vG~ 400 (455)
++||++||+.+ +.+++.+|++++++++++||+| +|.+ +|++||||||||+||++.+.+...++.+ ..+|+++|+
T Consensus 93 ~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~G~ 171 (213)
T 3cla_A 93 ETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAK 171 (213)
T ss_dssp TTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEEEC
T ss_pred CCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEeeE
Confidence 99999999987 6799999999999999999996 9988 8899999999999998766664333333 257899999
Q ss_pred eeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 401 IVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 401 i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
++++ +| +++|||||+||||++||++||+||++|+++||+
T Consensus 172 ~~~~----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 172 YQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp CEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred EEEE----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 9876 56 789999999999999999999999999999998
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-42 Score=329.28 Aligned_cols=180 Identities=18% Similarity=0.192 Sum_probs=163.1
Q ss_pred cCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEe-CCeEEEcCCccEEEEE-e
Q 012864 247 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID-GDDIIYRDYIDISFAV-G 324 (455)
Q Consensus 247 ~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~-~~~i~~~~~vnIgiAV-~ 324 (455)
.++||+|++.|+|+|+|+++|++. ++|++++++||+++||++||++|++|+ +++++++++||||+|| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 578999999999999999998642 789999999999999999999999999 8999999999999999 9
Q ss_pred cCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhc-CCCCcc------ccCCCcEEEecCCCCCCCCeeeecCCC---CeE
Q 012864 325 TKKGLVVPVIRNSERMNFAEIEKEISTLAKKAND-GSISID------EMAGGTFTISNGGVYGSLLSTPIINPP---QSA 394 (455)
Q Consensus 325 ~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~-g~l~~~------dl~ggTftISNlG~~G~~~~~Pii~~P---q~a 394 (455)
+++||++|++. ++.+++.+|++++++++++||+ |+|+++ |++||||||||+||++.+.++..++++ ..+
T Consensus 95 t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~P 173 (217)
T 2i9d_A 95 KENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYP 173 (217)
T ss_dssp STTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSC
T ss_pred cCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEE
Confidence 99999999986 4678999999999999999998 599995 999999999999998766664444444 357
Q ss_pred EEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 012864 395 ILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIV 445 (455)
Q Consensus 395 IL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~L 445 (455)
|+++|+++++ +| +++|||||+||||++||+++|+||++|+++|
T Consensus 174 Ii~~Gk~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 174 LLNAGKAIIR----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEecceEEEE----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 9999999875 56 7899999999999999999999999999987
No 13
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.58 E-value=5.2e-15 Score=129.82 Aligned_cols=71 Identities=25% Similarity=0.476 Sum_probs=65.1
Q ss_pred CCCCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCC-eecCCCEEEE
Q 012864 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGE-TVEPGAKIAV 148 (455)
Q Consensus 85 ~~~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~-~v~vG~~l~~ 148 (455)
+..++.++|+||++|++|.+|+|.+|+|++||.|++||+||+||+|| +++++|| .|.+|++|++
T Consensus 22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~ 101 (128)
T 1y8o_B 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 101 (128)
T ss_dssp -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence 34677899999999999999999999999999999999999999999 8899998 8999999999
Q ss_pred EecCCCc
Q 012864 149 ISKSGEG 155 (455)
Q Consensus 149 i~~~~~~ 155 (455)
|+..++.
T Consensus 102 i~~~~~~ 108 (128)
T 1y8o_B 102 IVEKEAD 108 (128)
T ss_dssp EESSGGG
T ss_pred EecCccc
Confidence 9876543
No 14
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=128.22 Aligned_cols=69 Identities=29% Similarity=0.489 Sum_probs=64.5
Q ss_pred CCCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCC-eecCCCEEEEE
Q 012864 86 DSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGE-TVEPGAKIAVI 149 (455)
Q Consensus 86 ~~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~-~v~vG~~l~~i 149 (455)
+.+|.++|+||++|++|.+|+|.+|+|++||.|++||+||+||++| +++++|+ .|.+|++|++|
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i 82 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT 82 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEE
Confidence 4578899999999999999999999999999999999999999999 7899999 89999999999
Q ss_pred ecCCC
Q 012864 150 SKSGE 154 (455)
Q Consensus 150 ~~~~~ 154 (455)
+..++
T Consensus 83 ~~~~~ 87 (108)
T 2dne_A 83 VGKPE 87 (108)
T ss_dssp ESCHH
T ss_pred ecCcc
Confidence 87654
No 15
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=123.31 Aligned_cols=71 Identities=28% Similarity=0.577 Sum_probs=65.2
Q ss_pred CCCCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCee-cCCCEEEE
Q 012864 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETV-EPGAKIAV 148 (455)
Q Consensus 85 ~~~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v-~vG~~l~~ 148 (455)
|+..+.++|+||++|++|.+|+|.+|+|++||.|++||+||+||+|| +++++|+.| .+|++|+.
T Consensus 2 ~~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~ 81 (98)
T 2dnc_A 2 SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGL 81 (98)
T ss_dssp CCCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEE
T ss_pred CCCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEE
Confidence 34567899999999999999999999999999999999999999999 789999998 99999999
Q ss_pred EecCCCc
Q 012864 149 ISKSGEG 155 (455)
Q Consensus 149 i~~~~~~ 155 (455)
|...++.
T Consensus 82 i~~~~~~ 88 (98)
T 2dnc_A 82 IVEEGED 88 (98)
T ss_dssp EECTTSC
T ss_pred EecCCCc
Confidence 9876543
No 16
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.54 E-value=2.1e-14 Score=117.39 Aligned_cols=67 Identities=24% Similarity=0.481 Sum_probs=62.7
Q ss_pred CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCC-eecCCCEEEEEec
Q 012864 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGE-TVEPGAKIAVISK 151 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~-~v~vG~~l~~i~~ 151 (455)
++.++|+||++|+++.+|+|.+|+|++||.|++||+||++|++| +++++|+ .|.+|++|+.|+.
T Consensus 3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 55789999999999999999999999999999999999999999 7899999 8999999999986
Q ss_pred CCC
Q 012864 152 SGE 154 (455)
Q Consensus 152 ~~~ 154 (455)
+++
T Consensus 83 ~~~ 85 (87)
T 3crk_C 83 KEA 85 (87)
T ss_dssp SST
T ss_pred ccC
Confidence 543
No 17
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.50 E-value=5.5e-14 Score=116.55 Aligned_cols=65 Identities=22% Similarity=0.336 Sum_probs=61.5
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+.++|+||++|+++.+|+|.+|+|++||.|++||+|++||++| +++++|+.|.+|++|+.|+.++
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 4689999999999999999999999999999999999999999 7889999999999999998654
No 18
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.48 E-value=3.2e-15 Score=143.52 Aligned_cols=66 Identities=30% Similarity=0.676 Sum_probs=0.0
Q ss_pred CceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCe-ecCCCEEEEEec
Q 012864 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGET-VEPGAKIAVISK 151 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~-v~vG~~l~~i~~ 151 (455)
+|.++|+||+||++|++|+|.+|+|++||.|++||+||+||||| |++++||. |.+|++|++|+.
T Consensus 1 ~~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 36789999999999999999999999999999999999999999 88999996 999999999976
Q ss_pred CC
Q 012864 152 SG 153 (455)
Q Consensus 152 ~~ 153 (455)
++
T Consensus 81 ~~ 82 (229)
T 1zy8_K 81 EG 82 (229)
T ss_dssp --
T ss_pred cC
Confidence 54
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.40 E-value=3.3e-13 Score=107.95 Aligned_cols=62 Identities=42% Similarity=0.692 Sum_probs=58.9
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|..+
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 58999999999999999999999999999999999999999 788999999999999999653
No 20
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.39 E-value=5e-14 Score=113.19 Aligned_cols=62 Identities=40% Similarity=0.608 Sum_probs=58.7
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEec
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||++|+++.+|+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|+.
T Consensus 2 ~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 467999999999999999999999999999999999999999 78899999999999999864
No 21
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.35 E-value=1.2e-12 Score=104.67 Aligned_cols=63 Identities=24% Similarity=0.462 Sum_probs=58.9
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
|.++|+||++|++ +|+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|..++
T Consensus 1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 4578999999998 9999999999999999999999999999 7889999999999999998654
No 22
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.34 E-value=1.4e-12 Score=103.62 Aligned_cols=61 Identities=30% Similarity=0.566 Sum_probs=58.3
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEec
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~ 151 (455)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|++
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 68999999999999999999999999999999999999999 78899999999999999863
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.24 E-value=1.7e-11 Score=97.96 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=55.9
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
++|+||++|++ + +|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 57999999996 7 99999999999999999999999999 7889999999999999997654
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.21 E-value=1e-11 Score=99.60 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=57.8
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
.++|+||++| ++..|+|.+|++++||.|++||+|+++|++| +++++|+.+..|++|+.|...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4689999999 6899999999999999999999999999999 788999999999999999754
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.00 E-value=3.6e-11 Score=97.53 Aligned_cols=58 Identities=24% Similarity=0.467 Sum_probs=53.5
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
.++|++|.+ |+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|...+
T Consensus 2 ~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 2 VKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred CcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 357889988 899999999999999999999999999 8899999999999999998754
No 26
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=98.69 E-value=6.9e-09 Score=85.76 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCCC----ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEE
Q 012864 88 GDLVDAVVPFMGESI----TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAV 148 (455)
Q Consensus 88 ~~~~~i~~P~lg~~~----~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~ 148 (455)
....+|++|..++.. ..|+|.+|++++||.|++||+|+++|++| +.+++|+.|..|++|+.
T Consensus 13 ~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ 92 (94)
T 2jku_A 13 LGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVE 92 (94)
T ss_dssp -----------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC----------------------------------
T ss_pred ccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEE
Confidence 346789999998864 58999999999999999999999999999 67899999999999998
Q ss_pred Ee
Q 012864 149 IS 150 (455)
Q Consensus 149 i~ 150 (455)
|+
T Consensus 93 ie 94 (94)
T 2jku_A 93 LE 94 (94)
T ss_dssp --
T ss_pred EC
Confidence 74
No 27
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=98.67 E-value=3e-08 Score=77.02 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=46.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
..|+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|...
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 47899999999999999999999999998 689999999999999999653
No 28
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=81.55 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=46.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCCC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
.+|+|.+|++++||.|++||+|++||++| +. ++|+.|..|++|+.|...+.
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~~ 77 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDDL 77 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCCh
Confidence 56889999999999999999999999999 56 99999999999999976543
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=7.3e-08 Score=80.36 Aligned_cols=51 Identities=25% Similarity=0.456 Sum_probs=46.9
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc--------------eeccCCCeecCCCEEEEEecCC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK--------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
..|+|.+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|...+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEEECSCTTCEECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 57899999999999999999999999999 6779999999999999997544
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.52 E-value=1.4e-07 Score=73.35 Aligned_cols=48 Identities=29% Similarity=0.544 Sum_probs=44.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
..|+|.+|++++||.|++||+|+++|++| +.+++|+.|..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 46899999999999999999999999999 6678999999999999874
No 31
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.41 E-value=2.8e-07 Score=72.54 Aligned_cols=48 Identities=29% Similarity=0.485 Sum_probs=44.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
..|.|.+|++++||.|++||+|+++|++| +.+++|+.|..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 46789999999999999999999999988 6678999999999999884
No 32
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.40 E-value=3.2e-07 Score=76.34 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=47.4
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCCC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
..|+|.+|++++||.|++||+|+++|++| +.+++|+.|..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 47899999999999999999999999999 57899999999999999976543
No 33
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.39 E-value=1.9e-07 Score=74.26 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=39.5
Q ss_pred EEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 109 KFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
+|++++||.|++||+|+++|++| +++++|+.|..|++|+.|+
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 58999999999999999999999 7789999999999999884
No 34
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.30 E-value=5.4e-07 Score=99.00 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=44.9
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
-|+|.+|+|++||+|++||+|++||++| +++++||.|.+|++|+.|+
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 4899999999999999999999999999 8899999999999999984
No 35
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.26 E-value=1.2e-07 Score=104.18 Aligned_cols=49 Identities=31% Similarity=0.585 Sum_probs=0.0
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecC
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
.|+|.+|+|++||+|++||+||+||+|| +++++||.|.+|++|+.|+++
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 5889999999999999999999999999 889999999999999999764
No 36
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.22 E-value=9.3e-07 Score=102.68 Aligned_cols=45 Identities=38% Similarity=0.547 Sum_probs=44.1
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEE
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i 149 (455)
|+|.+|+|++||+|++||+|++||||| |++++||.|.+|++|+.|
T Consensus 1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 899999999999999999999999999 999999999999999987
No 37
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.21 E-value=1e-06 Score=101.77 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=45.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
.|+|.+|+|++||.|++||+|++||++| +++++||.|.+|++|+.|+.++
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~~ 1149 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKAT 1149 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC---
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 5889999999999999999999999999 9999999999999999997543
No 38
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=97.81 E-value=8.2e-06 Score=89.82 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=44.6
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
.|+|.+|+|++||.|++||+|++||++| +++++|+.|..|++|+.|+
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 7899999999999999999999999999 8899999999999998873
No 39
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.70 E-value=2.1e-05 Score=91.03 Aligned_cols=47 Identities=21% Similarity=0.459 Sum_probs=39.4
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEe
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~ 150 (455)
.|+|.+|+|++||.|++||+|++||++| +++++||.|..|++|+.|+
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 5899999999999999999999999999 8999999999999999875
No 40
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=97.69 E-value=5.1e-05 Score=64.26 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=46.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc---------------------------------c-----------eeccCCC
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD---------------------------------K-----------LIAKEGE 138 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd---------------------------------K-----------i~~~~G~ 138 (455)
..|.|.+|++++||.|++||+|++++++ . +.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 5799999999999999999999999987 1 6679999
Q ss_pred eecCC-CEEEEEecCCC
Q 012864 139 TVEPG-AKIAVISKSGE 154 (455)
Q Consensus 139 ~v~vG-~~l~~i~~~~~ 154 (455)
.|..| ++|+.|...+.
T Consensus 88 ~v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 88 YVSASTTELVRVTNLNP 104 (116)
T ss_dssp EECTTTSCCEEEECSCT
T ss_pred EEcCCCcEEEEEECCCe
Confidence 99999 99999977654
No 41
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=96.74 E-value=0.00092 Score=58.78 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=45.0
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------e---eccCCCeec---CCC-EEEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------L---IAKEGETVE---PGA-KIAV 148 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i---~~~~G~~v~---vG~-~l~~ 148 (455)
..+..|.+|+ +..++ | +++||+|++||+||+||++| + +++.|+.|. -|+ .|+.
T Consensus 37 t~~a~~~lG~-i~~V~---l-p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~ 111 (136)
T 1zko_A 37 TNHAQEQLGD-VVYVD---L-PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK 111 (136)
T ss_dssp CHHHHHHHCS-EEEEE---C-CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred EhhhcccCCC-cEEEE---e-cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence 3455677877 43333 2 69999999999999999999 4 677888887 887 8888
Q ss_pred EecCC
Q 012864 149 ISKSG 153 (455)
Q Consensus 149 i~~~~ 153 (455)
|...+
T Consensus 112 i~~~~ 116 (136)
T 1zko_A 112 MEISD 116 (136)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 88654
No 42
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=95.67 E-value=0.0071 Score=58.17 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|.|.+++|++||.|++||+|++++++
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 4699999999999999999999999874
No 43
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=95.37 E-value=0.0027 Score=55.39 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=30.0
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.++..|.+|+ +..+++ +++||+|++||+||+||++|
T Consensus 28 td~a~~~lG~-i~~v~l----p~~G~~V~~g~~l~~vEs~K 63 (131)
T 1hpc_A 28 TDHAQDHLGE-VVFVEL----PEPGVSVTKGKGFGAVESVK 63 (131)
T ss_dssp CHHHHHHHCS-EEEEEC----CCTTCEECBTSEEEEEEESS
T ss_pred ehhhcccCCC-ceEEEe----cCCCCEEeCCCEEEEEEecc
Confidence 4456788887 666665 69999999999999999999
No 44
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=95.37 E-value=0.0027 Score=55.25 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=30.6
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.++..|.+|+ +..+++ +++||+|++||+||+|||+|
T Consensus 29 td~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K 64 (128)
T 3a7l_A 29 TEHAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVK 64 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESS
T ss_pred ehHHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecc
Confidence 4566788887 666665 79999999999999999999
No 45
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=95.33 E-value=0.0028 Score=55.05 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=30.3
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.++..|.+|+ +..+++ +++||+|++||+||+||++|
T Consensus 28 t~~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K 63 (128)
T 1onl_A 28 TDYAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVK 63 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESS
T ss_pred ehHHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcc
Confidence 4456778887 666665 79999999999999999999
No 46
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.98 E-value=0.022 Score=58.39 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=25.4
Q ss_pred ceEEEEEEee-cCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLK-QPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v-~~Gd~V~~gd~l~evet 129 (455)
..|.|.+++| ++||.|++||+|+++++
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~ 155 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEEC
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcC
Confidence 5799999998 99999999999999995
No 47
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=94.18 E-value=0.042 Score=54.28 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=26.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|.|.+++|++||.|++||+|++++++
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4689999999999999999999999985
No 48
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=94.12 E-value=0.026 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=25.9
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|.|.+++|++||.|++||+|++++++
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 4689999999999999999999999874
No 49
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=94.07 E-value=0.042 Score=54.67 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|.|.+++|++||.|++||+|+++++.
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 4789999999999999999999999986
No 50
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=92.43 E-value=0.11 Score=40.19 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=25.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
-.|+|.++++++||.|..|++|++++|
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 479999999999999999999999986
No 51
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=91.01 E-value=0.16 Score=39.47 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=25.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|+|.++++++||.|..|++|++++.+
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 51 ADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 4789999999999999999999999865
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=90.69 E-value=0.16 Score=38.36 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.7
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.|.|.++++++||.|+.|++|++++.+
T Consensus 43 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 43 RSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 4789999999999999999999999765
No 53
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=90.64 E-value=0.15 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=29.5
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..+++-| -.|.|.++++++||.|+.|++|++|+.+
T Consensus 43 ~~~i~Ap------~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 43 SMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eEEEeCC------CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 4556655 4689999999999999999999999864
No 54
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=90.01 E-value=0.25 Score=39.24 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.7
Q ss_pred ceEEEEEEeecCCC-eeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd-~V~~gd~l~evetd 130 (455)
..|+|.++++++|| .|+.|++|++++.+
T Consensus 55 ~~G~v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 55 EEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp SCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred cCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence 47999999999999 89999999999864
No 55
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=89.84 E-value=0.22 Score=38.65 Aligned_cols=26 Identities=42% Similarity=0.721 Sum_probs=24.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
-+|+|.+.++++||.|+.|++|++||
T Consensus 55 ~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 55 KSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 47899999999999999999999985
No 56
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=89.77 E-value=0.26 Score=39.80 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=26.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
..|+|.++++++||.|..|++|++++..
T Consensus 54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 54 YDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp SCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4799999999999999999999999864
No 57
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=89.45 E-value=0.24 Score=38.34 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=25.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
-.|+|.++++++||.|..|++|++++.+
T Consensus 48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 48 KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 3689999999999999999999999864
No 58
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=89.43 E-value=0.2 Score=46.29 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=32.0
Q ss_pred EEeecCCCeeecCCcEEE----------------------EEccc--------------ee--ccCCCeecCCCEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQ----------------------IETDK--------------LI--AKEGETVEPGAKIA 147 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~e----------------------vetdK--------------i~--~~~G~~v~vG~~l~ 147 (455)
..+|++||.|++||.||| |++++ +. +++|+.|.+|++||
T Consensus 22 ~L~V~dG~~VkkG~~laeWDPIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~~GdvLA 98 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEPPIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGLPLS 98 (193)
T ss_dssp EESCCTTCEECTTCEEEEECCEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEECTTSBSS
T ss_pred EEEECCCCEEcCCCEEEEeCcEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEcCCCEEe
Confidence 458999999999999999 22222 67 88999999999988
No 59
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=89.42 E-value=0.29 Score=43.69 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=22.1
Q ss_pred EEEEEeecCCCeeecCCcEEEEEccc
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
+=-+.+|++||+|++||+|+++.-|+
T Consensus 89 ~gF~~~V~~Gd~V~~G~~L~~~d~~~ 114 (154)
T 2gpr_A 89 NGFESFVTQDQEVNAGDKLVTVDLKS 114 (154)
T ss_dssp CSEEECCCTTCEECTTCEEEEECHHH
T ss_pred CceEEEEcCCCEEcCCCEEEEECHHH
Confidence 33567899999999999999998777
No 60
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=88.67 E-value=0.16 Score=43.72 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=18.0
Q ss_pred cCCCeeecCCcEEEEEccc
Q 012864 113 QPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 113 ~~Gd~V~~gd~l~evetdK 131 (455)
++|++|++||+++.||+.|
T Consensus 41 ~vG~~v~~G~~~~~VES~K 59 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVK 59 (125)
T ss_dssp CTTCEECTTCEEEEEEESS
T ss_pred CCCCEEcCCCEEEEEEEcc
Confidence 6788999999999999999
No 61
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=88.30 E-value=0.29 Score=44.85 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-+++|++||+|++||+|+++.-|+
T Consensus 118 F~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 118 FTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp EEECSCTTCEECTTCEEEEECHHH
T ss_pred ceEEEeCcCEEcCCCEEEEECHHH
Confidence 488999999999999999998877
No 62
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=87.91 E-value=0.17 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred cCCCeeecCCcEEEEEccc----eecc
Q 012864 113 QPGDRVEMDEPIAQIETDK----LIAK 135 (455)
Q Consensus 113 ~~Gd~V~~gd~l~evetdK----i~~~ 135 (455)
++|++|++||+++.||+.| |+.+
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sP 89 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAP 89 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECS
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecC
Confidence 7899999999999999999 5554
No 63
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=87.09 E-value=0.38 Score=36.80 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=24.1
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
-.|.|.++++++|+.|..|++|++||
T Consensus 52 ~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 52 TDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEecCCcCEECCCCEEEEEC
Confidence 47899999999999999999999986
No 64
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.72 E-value=0.39 Score=39.22 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=26.0
Q ss_pred ceEEEEEEeecCCCee-ecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRV-EMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V-~~gd~l~evetd 130 (455)
.+|+|.++++++||.| ..|++|++++.+
T Consensus 57 ~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 57 DDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp SCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred CCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 4799999999999999 999999999875
No 65
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=86.65 E-value=0.49 Score=40.79 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.9
Q ss_pred ceEEEEEEeecCCC-eeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd-~V~~gd~l~evetd 130 (455)
.+|+|.++++++|| .|+.||+|++|+.+
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~ 105 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEK 105 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 57999999999998 89999999999975
No 66
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=86.45 E-value=0.49 Score=35.65 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=24.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
..|.|.++++++|+.|..|++|+++|
T Consensus 49 ~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 49 RDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 47899999999999999999999985
No 67
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=85.94 E-value=0.13 Score=51.09 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=26.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|.|.+++|++||.|++||+|++++++.
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence 45789999999999999999999999874
No 68
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=85.62 E-value=0.28 Score=38.72 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=29.8
Q ss_pred ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
+..+|+-| -.|+|.++++++||.|..|++|++|+.+
T Consensus 38 ~~~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 35666666 4678899999999999999999999864
No 69
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=85.45 E-value=0.28 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.6
Q ss_pred ecCCCeeecCCcEEEEEccc
Q 012864 112 KQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK 131 (455)
.++|++|++||+++.||+.|
T Consensus 57 P~vG~~v~~G~~~~~VES~K 76 (137)
T 3tzu_A 57 PEVGETVSAGESCGEVESTK 76 (137)
T ss_dssp CCTTCEECTTSEEEEEEESS
T ss_pred CCCCCEEeCCCEEEEEEecc
Confidence 37899999999999999999
No 70
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=85.06 E-value=0.29 Score=43.66 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=24.0
Q ss_pred ecCCCeeecCCcEEEEEccc----eeccC-CCeecCCC
Q 012864 112 KQPGDRVEMDEPIAQIETDK----LIAKE-GETVEPGA 144 (455)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK----i~~~~-G~~v~vG~ 144 (455)
-++|++|++||+++.||+.| |+.+. |+++.|.+
T Consensus 67 P~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 67 PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 36889999999999999999 55553 34444443
No 71
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=84.75 E-value=0.56 Score=39.03 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=26.2
Q ss_pred ceEEEEEEeecCCC-eeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd-~V~~gd~l~evetdK 131 (455)
..|+|.++++++|| .|+.|++|++|+.+.
T Consensus 57 ~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 57 EECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp SSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred CCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 47999999999999 899999999998753
No 72
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=84.10 E-value=1.5 Score=43.58 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=37.9
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc----cc-------------eeccCCCeecCCCEEEEEecC
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DK-------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet----dK-------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
.+-+.+.+++.||.|++||+|++|.. .. +.....-.|..|+.|+.|...
T Consensus 264 ~~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 264 HDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp SCEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECSSEECTTCEEEEEECB
T ss_pred CCeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCCCccCCCCEEEEEecc
Confidence 34478889999999999999999997 22 334455678889999988654
No 73
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=83.36 E-value=1.6 Score=43.75 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=39.6
Q ss_pred EEEEEeecCCCeeecCCcEEEEEc----cc-------------eeccCCCeecCCCEEEEEecCC
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIET----DK-------------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evet----dK-------------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
-+.+.+++.||.|++||+|++|+. .+ +....+..|..|+.|+.|....
T Consensus 276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~~~~V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGDAVAVVMEDY 340 (354)
T ss_dssp EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTCEEEEEEEEC
T ss_pred EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeCCCccCCCCEEEEEeeec
Confidence 378888999999999999999997 34 5556777889999999997543
No 74
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=83.36 E-value=1.2 Score=40.78 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=17.0
Q ss_pred EEeecCCCeeecCCcEEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~ev 127 (455)
..+|++||.|++||.|||.
T Consensus 63 ~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp EESSCTTCEECTTCEEEEC
T ss_pred EEEecCCCEEcCCCEEEEE
Confidence 4599999999999999984
No 75
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=83.21 E-value=0.58 Score=42.04 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.9
Q ss_pred EEEEEeecCCCeeecCCcEEEEEccce
Q 012864 106 TLAKFLKQPGDRVEMDEPIAQIETDKL 132 (455)
Q Consensus 106 ~i~~w~v~~Gd~V~~gd~l~evetdKi 132 (455)
+=-+.+|++||+|++||+|+++.-|+|
T Consensus 94 ~gF~~~V~~Gd~V~~G~~L~~~d~~~i 120 (162)
T 1ax3_A 94 EGFTSFVSEGDRVEPGQKLLEVDLDAV 120 (162)
T ss_dssp TTEEESCCCCSEECSEEEEEEECHHHH
T ss_pred CccEEEEeCCCEEcCCCEEEEECHHHH
Confidence 335678999999999999999877764
No 76
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=83.15 E-value=0.46 Score=47.88 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=33.1
Q ss_pred EEeecCCCeeecCCcEEE----------------------EEc--cc------------ee--ccCCCeecCCCEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQ----------------------IET--DK------------LI--AKEGETVEPGAKIA 147 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~e----------------------vet--dK------------i~--~~~G~~v~vG~~l~ 147 (455)
..+|++||.|++||.||| |+. +| +. +++|+.|.+|++||
T Consensus 62 ~l~v~~g~~V~~g~~la~wdpii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~vla 138 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEPPIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGLPLS 138 (352)
T ss_dssp EESCCTTCEECTTCEEEEECCEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTCBSB
T ss_pred EEEecCCCEEcCCCEEEEeccEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCcEEe
Confidence 569999999999999999 332 22 67 89999999999999
No 77
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=82.10 E-value=0.7 Score=36.35 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
..|+|.+++ ++||.|..|++|++|+.+.
T Consensus 49 ~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 49 ERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 478999999 9999999999999998764
No 78
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=82.05 E-value=1.9 Score=43.55 Aligned_cols=49 Identities=10% Similarity=0.327 Sum_probs=38.2
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc------cc-------------eeccCCCeecCCCEEEEEecC
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET------DK-------------LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet------dK-------------i~~~~G~~v~vG~~l~~i~~~ 152 (455)
.+=+.+.+++.||.|++||+|++|.. .. +.....-.|..|+.|+.|..+
T Consensus 297 ~~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~V~~G~~l~~i~~~ 364 (368)
T 3fmc_A 297 KAGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASVHQGTELYKVMTK 364 (368)
T ss_dssp SCEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEECTTCEEEEEEES
T ss_pred CCEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCccCCCCEEEEEeee
Confidence 44577789999999999999999987 22 444555688888888888653
No 79
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=81.28 E-value=0.3 Score=39.44 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=0.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
-.|.|.++++++||.|+.|++|++||
T Consensus 69 ~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 69 KTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp --------------------------
T ss_pred CCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 47899999999999999999999986
No 80
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=80.14 E-value=0.22 Score=38.78 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=24.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
..|+|.++++++||.|..|++|++++.
T Consensus 52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 52 ADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 467899999999999999999999875
No 81
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.23 E-value=1.2 Score=36.07 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=25.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-+|.|. +++++||.|+.|++|++++.+.
T Consensus 61 ~~G~V~-~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 61 ERGRVK-YIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp SSEEEE-ECSCTTCEECSSCEEEEECCSC
T ss_pred CCEEEE-EEeCCCCEECCCCEEEEEEcCC
Confidence 368899 9999999999999999998654
No 82
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=78.58 E-value=1.8 Score=38.72 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-+.+|++||+|++||+|+++.-|+
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d~~~ 119 (161)
T 1f3z_A 96 FKRIAEEGQRVKVGDTVIEFDLPL 119 (161)
T ss_dssp EEECSCTTCEECTTCEEEEECHHH
T ss_pred cEEEEeCcCEECCCCEEEEECHHH
Confidence 466899999999999999997776
No 83
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=77.55 E-value=1.3 Score=35.90 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=30.7
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccce
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKL 132 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdKi 132 (455)
..+|+-| -.|.|.++++++|+.|..|++|++|+.+.-
T Consensus 51 ~~~i~AP------~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 51 EHTIKSP------KDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp EEEEECS------SCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred eEEEECC------CCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 3455555 578999999999999999999999987763
No 84
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=76.33 E-value=26 Score=36.77 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=28.8
Q ss_pred EcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 415 RPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 415 r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
+..|.|++.||-...|...+-.||+.+++.|-
T Consensus 484 ~g~L~l~~~yn~a~~~~e~v~~~l~~v~~~L~ 515 (519)
T 3fot_A 484 RDASTLNIIYNDANYTEAEVQKYLQSIVEFML 515 (519)
T ss_dssp TTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999874
No 85
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=76.25 E-value=1.2 Score=41.17 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=12.8
Q ss_pred ecCCCeeecCCcEE
Q 012864 112 KQPGDRVEMDEPIA 125 (455)
Q Consensus 112 v~~Gd~V~~gd~l~ 125 (455)
|++|+.|++||+|+
T Consensus 85 V~dG~~V~~GdvLA 98 (193)
T 2xha_A 85 LRVGTKVKQGLPLS 98 (193)
T ss_dssp CCTTCEECTTSBSS
T ss_pred cCCCCEEcCCCEEe
Confidence 78999999999887
No 86
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=75.49 E-value=0.4 Score=37.21 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.2
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
.|+|.++++++||.|..|++|++++.+
T Consensus 52 ~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 52 AGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp SSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 678888999999999999999999753
No 87
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=72.30 E-value=0.76 Score=47.45 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=0.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
.+|+|.++++++||.|..||+|++||.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 68999999999999999999999999764
No 88
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=68.98 E-value=2.5 Score=46.03 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=24.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
.+|+|.++++++||.|+.||+|+++|
T Consensus 656 ~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 656 KKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 57999999999999999999999986
No 89
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=67.26 E-value=3.2 Score=40.41 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.6
Q ss_pred EEEEeecCCCeeecCCcEEEEEccc
Q 012864 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 107 i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
-++|++++||.|++||+|++|+-+=
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G~~ 96 (284)
T 1qpo_A 72 RVLDRVEDGARVPPGEALMTLEAQT 96 (284)
T ss_dssp EEEEECCTTCEECTTCEEEEEEEEH
T ss_pred EEEEEcCCCCEecCCcEEEEEEEeH
Confidence 3679999999999999999998765
No 90
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=66.46 E-value=3.1 Score=40.61 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++|+-+=
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G~~ 97 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRGPL 97 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEEEH
T ss_pred EEEEcCCCCCccCCCEEEEEEEcH
Confidence 679999999999999999988654
No 91
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=66.03 E-value=2.9 Score=40.80 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=18.6
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++|+-+=
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G~~ 96 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEGNT 96 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEEEH
T ss_pred EEEEcCCCCCcCCCCEEEEEEEcH
Confidence 568888888888888888877654
No 92
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=65.98 E-value=1.2 Score=48.45 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=0.0
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
.+|+|.++++++||.|+.||+|++||.+
T Consensus 646 ~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 646 HAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------
T ss_pred CCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 5789999999999999999999999975
No 93
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=65.63 E-value=3.3 Score=40.48 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++|+-+=
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G~a 100 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKGNV 100 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEEEH
T ss_pred EEEEeCCCCEeeCCCEEEEEEEcH
Confidence 478888888888888888887655
No 94
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=65.07 E-value=3.8 Score=39.55 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.6
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|.+||+|++|+-.=
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G~~ 83 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRGDF 83 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEEEH
T ss_pred EEEEcCCCCCcCCCCEEEEEEecH
Confidence 568999999999999999988764
No 95
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=64.95 E-value=3.6 Score=40.46 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.6
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++|+-+=
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~G~a 109 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGEALA 109 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEEEEH
T ss_pred EEEEeCCCCEeeCCCEEEEEEECH
Confidence 478888888888888888887654
No 96
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=64.02 E-value=3.7 Score=40.36 Aligned_cols=24 Identities=17% Similarity=0.446 Sum_probs=16.8
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++|+-+=
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G~a 111 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRGPA 111 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEEEH
T ss_pred EEEEcCCCCEecCCCEEEEEEecH
Confidence 467777777777777777776543
No 97
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=63.12 E-value=3.9 Score=40.59 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=16.4
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|++||+|++|+-+=
T Consensus 110 v~~~~~dG~~v~~g~~l~~v~G~a 133 (320)
T 3paj_A 110 IEWHVQDGDTLTPNQTLCTLTGPA 133 (320)
T ss_dssp EEESSCTTCEECTTCEEEEEEEEH
T ss_pred EEEEeCCCCEecCCCEEEEEEecH
Confidence 467777777777777777776544
No 98
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=62.54 E-value=4.1 Score=39.92 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++|+.|..||+|++|+-.=
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G~~ 110 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQGPA 110 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEEEH
T ss_pred EEEEcCCCCEecCCCEEEEEEEcH
Confidence 679999999999999999998765
No 99
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=61.90 E-value=3.8 Score=47.46 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetd 130 (455)
.+|+|.++++++||.|+.||+|++||.+
T Consensus 1121 ~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1121 FDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4799999999999999999999999864
No 100
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=59.77 E-value=4.1 Score=40.91 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=23.0
Q ss_pred ecCCCeeecCCcEEEEEccc-eeccCCCeecCCCE
Q 012864 112 KQPGDRVEMDEPIAQIETDK-LIAKEGETVEPGAK 145 (455)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK-i~~~~G~~v~vG~~ 145 (455)
+++||.|++||+|+ .|. ++++..-+|..|..
T Consensus 125 v~~g~~v~~G~vla---k~~aiiaeidG~V~fg~~ 156 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS---KNEEYICELDGKIVEIER 156 (352)
T ss_dssp CCTTCEECTTCBSB---SSSSCBCCSCEEEEEEEE
T ss_pred cCCCCEEccCcEEe---cCceEEeccceEEEECCc
Confidence 78999999999999 333 66666666666553
No 101
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=59.41 E-value=4.4 Score=41.87 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=18.7
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
++-+-=+.+++|.||.|++||+|++|=
T Consensus 375 id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 375 IDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 444444667777777777777777776
No 102
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=59.04 E-value=12 Score=36.75 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=32.1
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEc----cc-------------eeccCCCeecCCCEEEEEec
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DK-------------LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evet----dK-------------i~~~~G~~v~vG~~l~~i~~ 151 (455)
.+-+...+++.||.|++||+|+++-. .+ +.....-.|..|+.|+.|..
T Consensus 264 ~~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 264 SPGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRSAMYVQGNEEVAILAR 328 (332)
T ss_dssp SSEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTCEEEEEEE
T ss_pred CCeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeCCCeeCCCCEEEEEee
Confidence 34456677888999999999988843 11 33344456777777777754
No 103
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=58.37 E-value=5.5 Score=46.43 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=17.1
Q ss_pred EEeecCCCeeecCCcEEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~ev 127 (455)
..+|++||.|++||.|||.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w 1020 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW 1020 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC
T ss_pred EEEEcCCCEecCCCEEEEE
Confidence 5789999999999999874
No 104
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=58.26 E-value=4.5 Score=39.64 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=18.6
Q ss_pred EEEeecCCCeeecCCcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
++|++++||.|..||+|++|+-+=
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G~~ 96 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRGPA 96 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEEEH
T ss_pred EEEEcCCCCCCCCCCEEEEEEEcH
Confidence 568888888888888888887654
No 105
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=58.24 E-value=5.3 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=15.1
Q ss_pred eeccCCCeecCCCEEEEEecCCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
++++.||.|+.|++|++|-.+.+
T Consensus 380 ~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 380 LHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp ESCCTTCEECTTCEEEEEEESSS
T ss_pred EeccCCCEECCCCeEEEEEcCCc
Confidence 66667777777777777765443
No 106
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=58.15 E-value=5.3 Score=41.14 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=14.9
Q ss_pred eeccCCCeecCCCEEEEEecCCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
++++.||.|+.|++|++|-.+.+
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEECSS
T ss_pred eeccCCCEeCCCCeEEEEEeCCc
Confidence 66666777777777777765443
No 107
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=58.14 E-value=2.1 Score=40.43 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=0.0
Q ss_pred ceEEEEEEeecCCCe-eecCCcEEEEEcc
Q 012864 103 TDGTLAKFLKQPGDR-VEMDEPIAQIETD 130 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~-V~~gd~l~evetd 130 (455)
.+|+|.++++++||. |..|++|++|+.+
T Consensus 53 ~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 53 DDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 578999999999997 9999999999753
No 108
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=56.79 E-value=4.1 Score=33.47 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=29.8
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecC-CcEEEEEccc
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMD-EPIAQIETDK 131 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~g-d~l~evetdK 131 (455)
...|+-| -+|.|.++.+++|+.|..| ++|+.|..+.
T Consensus 67 ~~~i~AP------~~G~V~~~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 67 HTEIKAP------FDGTIGDALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp EEEEECS------SSEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred CCEEEcC------CCEEEEEEECCCCCEEcCCCcEEEEEECCC
Confidence 4566666 3688999999999999999 9999998765
No 109
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=55.28 E-value=6.4 Score=41.11 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=12.0
Q ss_pred eeccCCCeecCCCEEEEEecC
Q 012864 132 LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~ 152 (455)
++++.||.|+.|++|++|-.+
T Consensus 415 l~~k~G~~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 415 LLVDVGQRLRRGTPWLRVHRD 435 (474)
T ss_dssp ECSCTTCEECTTCEEEEEEES
T ss_pred EEccCCCEECCCCeEEEEEcC
Confidence 555555556666666666544
No 110
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=52.24 E-value=7.9 Score=45.13 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=23.6
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~ev 127 (455)
.+|+|.++++++||.|+.||+|++|
T Consensus 1211 ~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1211 KSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 5699999999999999999999987
No 111
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=50.31 E-value=5.5 Score=41.18 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=10.7
Q ss_pred eeccCCCeecCCCEEEEEecC
Q 012864 132 LIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~ 152 (455)
++++.||.|+.|++|++|-.+
T Consensus 385 ~~~k~g~~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEES
T ss_pred EeccCCCEECCCCeEEEEecC
Confidence 445555555555555555443
No 112
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=49.65 E-value=8.3 Score=36.32 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+++++||.|+.|++|+.|+..+
T Consensus 36 v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 36 RNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp ECSCTTCEECTTSCSEEECCHH
T ss_pred EEcCCCCEecCCCEEEEECcHH
Confidence 8999999999999999997643
No 113
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=49.43 E-value=14 Score=37.58 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=26.9
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
+-|+++++|.++||.-+..|++.|.++..
T Consensus 162 ~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r 190 (454)
T 2e1v_A 162 IAIGITNHHCLGDASTRFCFLKAWTSIAR 190 (454)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeeecchhHHHHHHHHHHHHhc
Confidence 44899999999999999999999999887
No 114
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=49.04 E-value=14 Score=37.51 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=27.1
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhcC
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVED 447 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE~ 447 (455)
+-|++++.|.++||.-+..|++.|.++...
T Consensus 148 ~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg 177 (451)
T 2rkv_A 148 LILTVNGQHGAMDMVGQDAVIRLLSKACRN 177 (451)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeeeeeehhccccHHHHHHHHHHHHHHhcC
Confidence 448999999999999999999999998764
No 115
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=48.03 E-value=14 Score=37.15 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
+-|+++++|.+.||.-+..|++.|.++..
T Consensus 152 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 180 (421)
T 2bgh_A 152 TAIGVNLSHKIADVLSLATFLNAWTATCR 180 (421)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeeEEechHHHHHHHHHHHHHHhc
Confidence 44899999999999999999999999875
No 116
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=47.98 E-value=14 Score=37.56 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=26.9
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
+-|+++++|.++||.-+..|++.|.++..
T Consensus 157 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 185 (453)
T 2xr7_A 157 ISIGFTNHHVAGDGATIVKFVRAWALLNK 185 (453)
T ss_dssp EEEEEEECTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeeeechhHHHHHHHHHHHHhh
Confidence 44899999999999999999999999877
No 117
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=47.83 E-value=15 Score=37.18 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=26.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 418 MYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 418 m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
+-|+++++|.++||.-+..|++.|.++..
T Consensus 150 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 178 (439)
T 4g22_A 150 VSLGVGMRHHAADGFSGLHFINSWSDMAR 178 (439)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeeeccCcHHHHHHHHHHHHHHhC
Confidence 34899999999999999999999999875
No 118
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=45.98 E-value=21 Score=32.01 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=24.1
Q ss_pred eecCCcEEEEEccc----eeccCCCeecCCCEEEEEecCCC
Q 012864 118 VEMDEPIAQIETDK----LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 118 V~~gd~l~evetdK----i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
+++|+-|+.++-+- +.+.+|+.|..|+.||.|.+.-.
T Consensus 96 lkkGt~L~lvpaeG~~V~~i~~~G~rV~kgd~lA~i~T~KG 136 (169)
T 3d4r_A 96 LKAGTKLISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKG 136 (169)
T ss_dssp ECTTCBCEEEEECSSEEEECCCCSEEECTTCEEEEEECTTC
T ss_pred EcCCCEEEEEEeCceEEEEEcCcCcEeccCCeEEEEEecCc
Confidence 34444555555554 67778888888888888776443
No 119
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=45.94 E-value=7.6 Score=35.20 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=16.6
Q ss_pred ceeccCCCeecCCCEEEEEec
Q 012864 131 KLIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 131 Ki~~~~G~~v~vG~~l~~i~~ 151 (455)
++.+++||.|+.|++|+.+..
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SCCCCTTCEECTTCEEEEECS
T ss_pred ccccCCCCEEcCCCEEEeecC
Confidence 567888888888888888765
No 120
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=45.30 E-value=8.6 Score=37.48 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.2
Q ss_pred EEEeecCCCeeecC------CcEEEEEccc
Q 012864 108 AKFLKQPGDRVEMD------EPIAQIETDK 131 (455)
Q Consensus 108 ~~w~v~~Gd~V~~g------d~l~evetdK 131 (455)
++|++++||.|..| |+|++|+-.=
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G~~ 98 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITGPA 98 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEEEH
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEEcH
Confidence 56888888888888 8888887654
No 121
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=43.90 E-value=10 Score=33.92 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.0
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEEccc
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~evetdK 131 (455)
||-.+--.+.+||.|.+||.|+-|.|-|
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~K 135 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKK 135 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTT
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecC
Confidence 3444556899999999999999999999
No 122
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=42.94 E-value=14 Score=32.59 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=18.5
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
+++++||.|+.|++|+.++-
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECCCTTCEECTTCEEEEECH
T ss_pred EEEcCCCEEcCCCEEEEECH
Confidence 79999999999999999964
No 123
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=40.25 E-value=12 Score=37.97 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=40.3
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc-----eeccCCC--eecCCCEEEEE
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK-----LIAKEGE--TVEPGAKIAVI 149 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK-----i~~~~G~--~v~vG~~l~~i 149 (455)
...|+-| -+|.|.+..+++|+.|..|++|++|.... +.+.|.+ .+++|+.+-..
T Consensus 207 ~~~I~AP------~~G~V~~~~v~~G~~V~~G~~l~~I~~~~~l~v~~~v~e~~~~~i~~G~~v~v~ 267 (413)
T 3ne5_B 207 RFTLKAP------IDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLT 267 (413)
T ss_dssp EEEEECS------SSEEEEECCCCTTCEECTTSCSEEEEEEEEEEEEEEEEGGGHHHHTTCCCEEEE
T ss_pred cEEEEcC------CCeEEEEEEcCCCCEECCCCcEEEEeCCCeEEEEEEECHHHHHhccCCCeEEEE
Confidence 4567777 46899999999999999999999997544 4444554 56677765443
No 124
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=40.08 E-value=33 Score=29.51 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=17.2
Q ss_pred cCCCeecCCCEEEEEecCC
Q 012864 135 KEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 135 ~~G~~v~vG~~l~~i~~~~ 153 (455)
++|+.|+.|++|+.|+...
T Consensus 54 ~vGd~V~~Gd~l~~VEs~K 72 (136)
T 1zko_A 54 EVGREVKKGEVVASIESVK 72 (136)
T ss_dssp CTTCEECTTCEEEEEEESS
T ss_pred CCCCEEeCCCEEEEEEEcc
Confidence 8999999999999998654
No 125
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=39.14 E-value=20 Score=31.93 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.4
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 98 ~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 98 RIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp ECSCTTCEECTTCEEEEECH
T ss_pred EEEeCcCEECCCCEEEEECH
Confidence 79999999999999999964
No 126
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=38.24 E-value=6.2 Score=31.45 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=14.1
Q ss_pred eecCCCeeecCCcEEE
Q 012864 111 LKQPGDRVEMDEPIAQ 126 (455)
Q Consensus 111 ~v~~Gd~V~~gd~l~e 126 (455)
+|++||.|++||.|.+
T Consensus 68 ~V~eGd~V~~G~~Ltd 83 (84)
T 2lmc_B 68 NVFEGERVERGDVISD 83 (84)
T ss_dssp SSCTTEEECBSCSSBC
T ss_pred EeCCCCEECCCCCccC
Confidence 6999999999998853
No 127
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=37.74 E-value=18 Score=35.23 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=39.6
Q ss_pred eEEEEccCCCCCCceEEEEEEeecCCCeeec-CCcEEEEEccc-----eeccCCC--eecCCCEEEE
Q 012864 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEM-DEPIAQIETDK-----LIAKEGE--TVEPGAKIAV 148 (455)
Q Consensus 90 ~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~-gd~l~evetdK-----i~~~~G~--~v~vG~~l~~ 148 (455)
...|+-| -.|.|.+..+++|+.|.. |++|++|.... +.+.+.+ .+++|+.+-.
T Consensus 170 ~~~i~AP------~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~l~v~~~v~e~~~~~i~~G~~v~v 230 (359)
T 3lnn_A 170 ILAVRSP------INGRVVDLNAATGAYWNDTTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATV 230 (359)
T ss_dssp EEEEECS------SCEEEEECCCCBTCEECCSSCCSEEEECCSEEEEEEEECGGGSTTCCTTCEEEE
T ss_pred eEEEECC------CCEEEEEeecCCCceeCCCCcceEEEecCCeEEEEEEeCHHHHhhCCCCCeEEE
Confidence 3567666 478999999999999999 99999998755 4444443 5667776543
No 128
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=37.23 E-value=14 Score=35.13 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=13.8
Q ss_pred ceeccCCCeecCCCEEEEEecC
Q 012864 131 KLIAKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 131 Ki~~~~G~~v~vG~~l~~i~~~ 152 (455)
++.|++|+.|..|++|+.+...
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EESCCTTCEECTTCEEEECBCC
T ss_pred ccccCCCCEECCCCEEEEeCCc
Confidence 4666666666666666666544
No 129
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=36.80 E-value=14 Score=35.76 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=21.3
Q ss_pred EccceeccCCCeecCCCEEEEEecCCC
Q 012864 128 ETDKLIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 128 etdKi~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
--+++.+++||.|+.|++|+.+...+.
T Consensus 228 HL~~i~V~~G~~V~~Gq~IG~vG~tG~ 254 (282)
T 2hsi_A 228 HLSKIDVKLGQQVPRGGVLGKVGATGR 254 (282)
T ss_dssp EESEECSCTTCEECTTCEEEECCCTTT
T ss_pred CCCccccCCcCEECCCCEEEEECCCCC
Confidence 335688999999999999998876543
No 130
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=36.74 E-value=3.3e+02 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.3
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 419 YIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 419 ~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
.|-|+++|=++||.-...|+++|.+..+
T Consensus 135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y~ 162 (493)
T 4hvm_A 135 VLGVVAHQMLLDARSRYMVLGAVWQAYY 162 (493)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEecchhhccHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998763
No 131
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=36.59 E-value=2.7e+02 Score=26.62 Aligned_cols=159 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCC-----
Q 012864 253 TTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK----- 327 (455)
Q Consensus 253 ~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~----- 327 (455)
.....++.....++++--++. ++|++.++.-|.+.+|.++ ...+. +.+-+|+.++..+
T Consensus 213 ~~~~~l~~~~~~~l~~~a~~~-------~~t~~~~l~aa~~~~l~r~-----~~~~~-----~~v~~g~~~~~R~~~~~~ 275 (422)
T 1q9j_A 213 VTRLWLSKQQTSDLMAFGREH-------RLSLNAVVAAAILLTEWQL-----RNTPH-----VPIPYVYPVDLRFVLAPP 275 (422)
T ss_dssp EEEECCCHHHHHHHHHHHTTT-------TCCHHHHHHHHHHHHHHHH-----HTCSS-----CCEEEEEEEETTTTSSSC
T ss_pred ceEEEeCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhc-----ccCCC-----ceEEEeeeeecccccCCC
Q ss_pred ----------CeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCC------ccccCCCc-------EEEecCC------C
Q 012864 328 ----------GLVVPVIRNSERMNFAEIEKEISTLAKKANDGSIS------IDEMAGGT-------FTISNGG------V 378 (455)
Q Consensus 328 ----------GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~------~~dl~ggT-------ftISNlG------~ 378 (455)
|..+-.+.-....++.++.+++++....+....-. .+++.... +.++|++ .
T Consensus 276 ~~~~~~~~~vG~f~n~lp~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~pl~~~~~n~~~~~~~~~ 355 (422)
T 1q9j_A 276 VAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRT 355 (422)
T ss_dssp CCTTTBSCCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCSSSCCCEEEECCCCCCSCCC
T ss_pred CChhhhhhhheeeeeeeeccCCCCHHHHHHHHHHHHHHHHhcCeeeecccchHHHhcccCCCCCceEEEecCCcCCCCCC
Q ss_pred CCCCCeeeec-----CCCCeEEEE-ecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 379 YGSLLSTPII-----NPPQSAILG-MHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 379 ~G~~~~~Pii-----~~Pq~aIL~-vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
++......+. ..|.-..+. +-..... +.+.+ ||.. ..+.++++.+..+|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------l~~~~-y~~~----~~~~~l~~~~~~~L~ 411 (422)
T 1q9j_A 356 PPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQ-------------LIIEH-HGHI----AEPGKSLEAIRSLLC 411 (422)
T ss_dssp CTTCEEEEEEEEECCBSSCCCCEEEEEEETTE-------------EEEEE-ESSC----SSHHHHHHHHHHHHH
T ss_pred CCCceeEeeecccccCCCCCceEEEEEeeCCe-------------EEEEE-ecCc----cchHHHHHHHHHHHH
No 132
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=36.48 E-value=3e+02 Score=26.56 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=79.7
Q ss_pred ccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCC--------Ce---EEEE-EccCCCCCHHHHHHH
Q 012864 281 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK--------GL---VVPV-IRNSERMNFAEIEKE 348 (455)
Q Consensus 281 kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~--------GL---~vPv-I~~a~~~sl~eIa~e 348 (455)
++|++.++.-|.+.+|.++-. +.+-+|+.+.... |. .+|+ ++-....++.++.++
T Consensus 231 ~~t~~~~l~aa~~~~L~~~~g-------------~dv~ig~~~~~R~~~~~~~~vG~f~n~lplr~~~~~~~t~~~~l~~ 297 (436)
T 1l5a_A 231 QIGWPDALVALCALYLESAEP-------------DAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQ 297 (436)
T ss_dssp TCCHHHHHHHHHHHHHHHHST-------------TCCEEEEEECCCTTSGGGGSCSCCCEEEEEECCCCTTCBHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhC-------------CceEEeeecccCCChHHhcCcceEEEEEEEEEecCCCCCHHHHHHH
Confidence 578899999999999987622 2455666665321 32 5676 443456799999999
Q ss_pred HHHHHHHHhcCC-CCcc-------------ccCCCcEEEecCCC--CCCCCeeeecCCCCeEEEEecceeeEEE--EeCC
Q 012864 349 ISTLAKKANDGS-ISID-------------EMAGGTFTISNGGV--YGSLLSTPIINPPQSAILGMHSIVNRPM--VVGG 410 (455)
Q Consensus 349 l~~l~~~a~~g~-l~~~-------------dl~ggTftISNlG~--~G~~~~~Pii~~Pq~aIL~vG~i~~~pv--v~~g 410 (455)
+++....+.... ...+ .+..-.|++.+... ++....... .+.-+...+-.+ ....
T Consensus 298 v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~l~v~~~~ 370 (436)
T 1l5a_A 298 SGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELK-------VLASGSAEGINFTFRGSP 370 (436)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEE-------EEEECCCCSEEEEEEECT
T ss_pred HHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEEE-------ecCCCCccceEEEEEecC
Confidence 988776665543 2111 11223344443321 111111100 011111110000 1000
Q ss_pred eEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 411 NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 411 ~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
..-+.+.+.||-.+++...+.+|++.+..+|+
T Consensus 371 ----~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~ 402 (436)
T 1l5a_A 371 ----QHELCLDITADLASYPQSHWQSHCERFPRFFE 402 (436)
T ss_dssp ----TSCEEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred ----CCcEEEEEEeChhhCCHHHHHHHHHHHHHHHH
Confidence 12367899999999999999998888877765
No 133
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=36.08 E-value=15 Score=35.82 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=21.1
Q ss_pred ccceeccCCCeecCCCEEEEEecCCC
Q 012864 129 TDKLIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 129 tdKi~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
-+++.|++||.|+.|++|+.+...+.
T Consensus 236 Ls~i~Vk~Gq~V~~GqvIG~vG~TG~ 261 (291)
T 1qwy_A 236 NNRLTVSAGDKVKAGDQIAYSGSTGN 261 (291)
T ss_dssp ESEECCCTTCEECTTCEEEECCCCSS
T ss_pred CCccccCCcCEECCCCEEEEECCCCC
Confidence 35688999999999999999876553
No 134
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=34.69 E-value=24 Score=30.05 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=27.9
Q ss_pred EEeecCCCeeecCCcEEEEEccc--------ee---ccCCCeecCCCEEEEEecCC
Q 012864 109 KFLKQPGDRVEMDEPIAQIETDK--------LI---AKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdK--------i~---~~~G~~v~vG~~l~~i~~~~ 153 (455)
+|...+||.+.-| + ||- .. .++|+.|..|++|+.|+...
T Consensus 14 eWv~~~~~~~~vG-----i-t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 63 (128)
T 1onl_A 14 EWALPEGDTVLVG-----I-TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVK 63 (128)
T ss_dssp EEEEEETTEEEEE-----E-CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESS
T ss_pred EEEEecCCEEEEE-----e-ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcc
Confidence 5888777755444 1 443 22 38999999999999998644
No 135
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=32.36 E-value=19 Score=34.34 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred Eccce-eccCCCeecCCCEEEEEecCCC
Q 012864 128 ETDKL-IAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 128 etdKi-~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
--+++ .+++||.|+.|++|+.+...+.
T Consensus 177 HL~~~~~V~~G~~V~~Gq~IG~vG~tG~ 204 (252)
T 3nyy_A 177 HLDSYAELEKGDPVKAGDLLGYMGDSGY 204 (252)
T ss_dssp EESEECSCCTTCEECTTCEEEECBCCCS
T ss_pred eCCCCCcCCCCCEECCCCEEEEECCCCC
Confidence 33445 7889999999999998876543
No 136
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=31.66 E-value=28 Score=33.65 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=37.4
Q ss_pred EEEEccCCCCCCceEEEEEEeecCCCeeecCCc---EEEEEccc-----eeccCCC--eecCCCEEE
Q 012864 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEP---IAQIETDK-----LIAKEGE--TVEPGAKIA 147 (455)
Q Consensus 91 ~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~---l~evetdK-----i~~~~G~--~v~vG~~l~ 147 (455)
..|+-| -.|.|.+..+++|+.|..|++ |+.|.... +.+.+.+ .+++|+.+-
T Consensus 154 ~~i~AP------~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~~l~v~~~v~e~~~~~v~~G~~v~ 214 (341)
T 3fpp_A 154 TRIVAP------MAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAW 214 (341)
T ss_dssp SEEECS------SSEEEEEESSCTTCEECCTTSCCCCEEEECCSEEEEEEECCGGGSTTCCTTCCCE
T ss_pred CEEECC------CCeEEEEEecCCCCEEecCCCCceEEEEecCCcEEEEEEECHHHHhhCCCCCEEE
Confidence 456666 468999999999999999998 99888644 3444443 566676543
No 137
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=31.60 E-value=44 Score=31.36 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=27.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-------------eeccCCCeecCCCEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-------------LIAKEGETVEPGAKI 146 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-------------i~~~~G~~v~vG~~l 146 (455)
..|+|.+...+ ++|.-.+.|++.. +++++||.|+.|++|
T Consensus 176 ~~G~I~~I~~~-----ekgg~~vtI~~~~G~~v~~~iP~Gp~LiV~~G~~v~~~qpL 227 (249)
T 1ci3_M 176 AAGVITAIAKA-----DDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAAL 227 (249)
T ss_dssp SCEEEEEEEEC-----TTSCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred CCeEEEEEEEc-----CCCCEEEEEECCCCCEEEEecCCCCeEEEecCCEEecCCcc
Confidence 45667766654 2355556666554 889999999999886
No 138
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=31.25 E-value=20 Score=31.83 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.5
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 98 ~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 98 SFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp ESCCCCSEECSEEEEEEECH
T ss_pred EEEeCCCEEcCCCEEEEECH
Confidence 79999999999999999964
No 139
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=31.14 E-value=29 Score=29.64 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.4
Q ss_pred ccCCCeecCCCEEEEEecCC
Q 012864 134 AKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 134 ~~~G~~v~vG~~l~~i~~~~ 153 (455)
.++|+.|..|++|+.|+...
T Consensus 44 p~~G~~V~~g~~l~~vEs~K 63 (131)
T 1hpc_A 44 PEPGVSVTKGKGFGAVESVK 63 (131)
T ss_dssp CCTTCEECBTSEEEEEEESS
T ss_pred cCCCCEEeCCCEEEEEEecc
Confidence 38999999999999998643
No 140
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=29.50 E-value=37 Score=28.81 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.5
Q ss_pred ccCCCeecCCCEEEEEecCC
Q 012864 134 AKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 134 ~~~G~~v~vG~~l~~i~~~~ 153 (455)
.++|+.|..|++|+.|+...
T Consensus 45 p~vG~~V~~g~~l~~vEs~K 64 (128)
T 3a7l_A 45 PEVGATVSAGDDCAVAESVK 64 (128)
T ss_dssp CCTTCEECTTCEEEEEEESS
T ss_pred cCCCCEEeCCCEEEEEEecc
Confidence 38999999999999998654
No 141
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=29.20 E-value=41 Score=30.29 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=19.8
Q ss_pred EEEEEEeecCCCeeecCCcEEEEEc
Q 012864 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (455)
Q Consensus 105 ~~i~~w~v~~Gd~V~~gd~l~evet 129 (455)
+-+.+..|++||.|++||+|..+-.
T Consensus 80 ~HL~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 80 YHMDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp ESEESCCCCTTCEECTTCEEEEECS
T ss_pred EcCCccccCCCCEEcCCCEEEeecC
Confidence 3345667999999999999998865
No 142
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=28.88 E-value=42 Score=30.48 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.7
Q ss_pred eeccCCCeecCCCEEEEEec
Q 012864 132 LIAKEGETVEPGAKIAVISK 151 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~ 151 (455)
.++++||.|+.|++|+.++-
T Consensus 120 ~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 120 RIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp ECSCTTCEECTTCEEEEECH
T ss_pred EEEeCcCEEcCCCEEEEECH
Confidence 89999999999999999974
No 143
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=28.37 E-value=22 Score=35.09 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+++++||.|+.|++|+.|+..+
T Consensus 57 v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 57 RLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp CCSCSSEEECTTSEEEEECCHH
T ss_pred EEcCCCCEEcCCCEEEEECcHH
Confidence 8899999999999999997543
No 144
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.23 E-value=19 Score=35.20 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred eeccCCCeecCCCEEEEEecCC
Q 012864 132 LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 132 i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
+++++||.|+.|++|+.|+..+
T Consensus 46 v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 46 LYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp ECCCTTSCCCSSCCCEECCCHH
T ss_pred EEECCCCEECCCCEEEEEcCHH
Confidence 8999999999999999997653
No 145
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=27.59 E-value=37 Score=27.91 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEeecCCCeeecCCcEEEEEccceeccCCCeecCCCEEEEE
Q 012864 109 KFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVI 149 (455)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKi~~~~G~~v~vG~~l~~i 149 (455)
+|.|.+||.+.- +|+-+++||.|...++|+.-
T Consensus 11 QykV~~Gd~i~v---------ekl~~~~G~~v~~~~VLlv~ 42 (103)
T 3r8s_R 11 QHRVSEGQTVRL---------EKLDIATGETVEFAEVLMIA 42 (103)
T ss_dssp EEEEETTCEEEE---------SCCCSCTTCEEEECCEEEEE
T ss_pred EEEEeCCCEEEE---------CCcCCCCCCEEEEeEEEEEe
Confidence 466666665432 35566777777777666653
No 146
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=27.29 E-value=14 Score=42.66 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.5
Q ss_pred eEEEEEEeecCCCeeecCCcEEEEE
Q 012864 104 DGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 104 e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
+|+|.++++++||.|+.||+|++||
T Consensus 1140 ~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1140 DGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CEEEEEEEeCCCCEECCCCEEEEec
Confidence 5688999999999999999999987
No 147
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=27.24 E-value=25 Score=34.94 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=21.7
Q ss_pred EccceeccCCCeecCCCEEEEEecCCC
Q 012864 128 ETDKLIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 128 etdKi~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
--+++.+++||.|+.|++|+.+...+.
T Consensus 280 hl~~~~v~~G~~V~~G~~Ig~~G~tg~ 306 (361)
T 2gu1_A 280 HLDKILVKKGQLVKRGQKIALAGATGR 306 (361)
T ss_dssp EESEECCCTTCEECTTCEEEECCCCSS
T ss_pred CcCccccCCcCEECCCCEEEEECCCCC
Confidence 335588999999999999999876543
No 148
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=26.60 E-value=8.1 Score=42.41 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.3
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~eve 128 (455)
..|+|.++++++||.|+.||+|++||
T Consensus 693 ~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 693 MEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 36788999999999999999999875
No 149
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=26.42 E-value=3.4e+02 Score=31.26 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=78.8
Q ss_pred ccchHHHHHHHHHHHhhcCCcccEEEeCCeEEEcCCccEEEEEecCC----------Ce---EEEE-EccCCCCCHHHHH
Q 012864 281 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK----------GL---VVPV-IRNSERMNFAEIE 346 (455)
Q Consensus 281 kls~~~~~ikA~a~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~----------GL---~vPv-I~~a~~~sl~eIa 346 (455)
++|++.++.-|.+..|.++ .+. +++-+|+.++... |. .+|+ ++-....++.++.
T Consensus 251 ~~T~~~vllaa~a~~L~r~-------tg~-----~dvv~G~pvsgR~~~~~~~~~~vG~fvntlplr~~~~~~~s~~~ll 318 (1304)
T 2vsq_A 251 HTTLSTALQAVWSVLISRY-------QQS-----GDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLL 318 (1304)
T ss_dssp TCCHHHHHHHHHHHHHHHH-------HTC-----SEEEEEEEECCCCTTSTTGGGCCSSCCEEEEEEEECCTTCBHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-------cCC-----CCEEEEEEeCCCCccchhhhcccccceeEEEEEecCCCCCcHHHHH
Confidence 5688888988888888875 221 1244666665321 32 4666 4445578999999
Q ss_pred HHHHHHHHHHhcCCC-Ccc---------ccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceee---EEEEeCCeEe
Q 012864 347 KEISTLAKKANDGSI-SID---------EMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN---RPMVVGGNVV 413 (455)
Q Consensus 347 ~el~~l~~~a~~g~l-~~~---------dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~---~pvv~~g~i~ 413 (455)
+++++....+.+.+- ..+ .+....|.+.|....+..............-+.+....+ ...+.++
T Consensus 319 ~~v~~~~~~a~~hq~~p~~~i~~~l~~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dL~l~~~~~--- 395 (1304)
T 2vsq_A 319 KRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPG--- 395 (1304)
T ss_dssp HHHHHHHHHHGGGTTSCHHHHHHSSSCSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEEEEECCCCCSSEEEEEECS---
T ss_pred HHHHHHHHHhhhcccCCHHHHHHHhCCCcccceeEEEeecccccccccccccCCceeEeeecccccccCeEEEEecC---
Confidence 999887777665432 111 222233444443221100000000000000001100000 0001111
Q ss_pred EEcEEEEEEEecccccChHHHHHHHHHHHHHhc
Q 012864 414 PRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 446 (455)
Q Consensus 414 ~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE 446 (455)
.-+.+.|.||..++|-..+.++++.+..+|+
T Consensus 396 --~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~ 426 (1304)
T 2vsq_A 396 --DEMLIKLAYNENVFDEAFILRLKSQLLTAIQ 426 (1304)
T ss_dssp --SSCEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred --CcEEEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 1256899999999999999988888777664
No 150
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=26.14 E-value=60 Score=30.49 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=26.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc--------------eeccCCCeecCCCEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------LIAKEGETVEPGAKIA 147 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK--------------i~~~~G~~v~vG~~l~ 147 (455)
..|+|.+...+ ++|.--+.|++.. +++++||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~-----ekgg~~vtI~~~~~G~~v~~~iP~GpeLiV~~G~~v~~~qpLT 228 (252)
T 1hcz_A 175 AGGIISKILRK-----EKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLT 228 (252)
T ss_dssp SCEEEEEEEEC-----TTSCEEEEEEETTTTEEEEEEECTTCCBCCCTTCEECTTCBSB
T ss_pred CCcEEEEEEEc-----CCCCEEEEEecCCCCCEEEEecCCCCeEEEecCCEEecCCccc
Confidence 45666666654 2355455555433 8899999999998863
No 151
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=25.68 E-value=17 Score=35.85 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=9.7
Q ss_pred ccCCCeecCCCEEEEEecC
Q 012864 134 AKEGETVEPGAKIAVISKS 152 (455)
Q Consensus 134 ~~~G~~v~vG~~l~~i~~~ 152 (455)
|++||.|+.|++|+.+...
T Consensus 253 V~~G~~V~~Gq~Ig~~G~t 271 (334)
T 3csq_A 253 FDVGKKLKKGDLMGHTGIG 271 (334)
T ss_dssp CCTTCEECTTSEEEECBCC
T ss_pred CCCcCEECCCCEEEeecCC
Confidence 4555555555555555433
No 152
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=25.45 E-value=79 Score=29.70 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=26.8
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-------------eeccCCCeecCCCEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-------------LIAKEGETVEPGAKIA 147 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-------------i~~~~G~~v~vG~~l~ 147 (455)
..|+|.+...-.. ++|.--+.|++.. +++++||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~Gp~LiV~~G~~v~~~qpLT 229 (251)
T 1e2w_A 175 AAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLT 229 (251)
T ss_dssp SCEEEEEEEESSS---SSCCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBCB
T ss_pred CCeEEEEEeeccc---CCCCEEEEEEcCCCCEEEEecCCCCeEEEecCCEEecCCccc
Confidence 4566666655111 1355555555544 8899999999998873
No 153
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=23.64 E-value=52 Score=32.55 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=26.4
Q ss_pred eecCCCeeecCCcEEEEEccc----------eeccCCCeecCCCEEEEEecCC
Q 012864 111 LKQPGDRVEMDEPIAQIETDK----------LIAKEGETVEPGAKIAVISKSG 153 (455)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK----------i~~~~G~~v~vG~~l~~i~~~~ 153 (455)
.++.||.|++||+|+++ .|. +... .-.|..|+.++.|..+.
T Consensus 280 ~~~~g~~V~~G~~La~i-~d~~v~a~~dG~~i~~p-~p~V~~G~~~~~i~~~~ 330 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHD-GDKPLMAKNDNEAIVFP-NRHVAIGQRAALMVCEV 330 (350)
T ss_dssp TCCBTEECCTTCEEEEE-TTEEEECSSSSCEEESC-CTTCCTTSEEEEEEEEC
T ss_pred cccCCCEeCCCCEEEEE-CCEEEEeCCCCEEEEec-CCCCCCCcEEEEEEEEc
Confidence 35678888888888887 333 2222 34677888777775443
No 154
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=23.59 E-value=59 Score=30.43 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=25.5
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-------------eeccCCCeecCCCEEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-------------LIAKEGETVEPGAKIA 147 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-------------i~~~~G~~v~vG~~l~ 147 (455)
..|+|.+...++ |.--+.|++.. +++++||.|+.|++|-
T Consensus 177 ~~G~i~~I~~~e------gg~~vtI~~~~G~~v~~~iP~Gp~LiV~~G~~v~~~qpLT 228 (249)
T 2jxm_B 177 IAGTIAAIEDNG------FGFDVTIQPEDGDAVVTSILPGPELIVAVGDTVEAGQLLT 228 (249)
T ss_dssp SCEEEEEECCSS------SEEEEEEECTTSCCEEEEECSSSCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEEeCC------CcEEEEEECCCCCEEEEecCCCCeEEEecCCEEecCCccc
Confidence 456666666544 33334444443 8899999999998863
No 155
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=21.56 E-value=90 Score=29.85 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=25.2
Q ss_pred ceEEEEEEeecCCCeeecCCcEEEEEccc-------------eeccCCCeecCCCEE
Q 012864 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-------------LIAKEGETVEPGAKI 146 (455)
Q Consensus 103 ~e~~i~~w~v~~Gd~V~~gd~l~evetdK-------------i~~~~G~~v~vG~~l 146 (455)
..|+|.+...-.. ++|.--..|++.. +++++||.|+.|++|
T Consensus 175 ~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~GpeLiV~eG~~v~~~qpL 228 (292)
T 1q90_A 175 AAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPL 228 (292)
T ss_dssp SSEEEEEEEECCT---TTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred CCeEEEEEeeccc---CCCceEEEEEcCCCCEEEEecCCCCeEEEecCCEEecCCcc
Confidence 4566666655111 1344455555444 788899998888876
No 156
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=21.56 E-value=77 Score=24.01 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=43.2
Q ss_pred CceEEEEEEeecCCCeeecCCcEEEEEccc---eeccCCCeecCCCEEEEEecCCC
Q 012864 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK---LIAKEGETVEPGAKIAVISKSGE 154 (455)
Q Consensus 102 ~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---i~~~~G~~v~vG~~l~~i~~~~~ 154 (455)
+.-++|++.+=..|-+=+.-|+=|++-.|+ |.-+.---|..||.|...+.+-|
T Consensus 7 ~~~A~VikVlGRtGs~G~~tQVrv~~l~d~~r~i~RnVkGPVR~GDIl~L~EtERE 62 (67)
T 3u5c_c 7 VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESERE 62 (67)
T ss_dssp CEEEEEEEEEEEESSSCCEEEEEEEESSSCSCEEEEECSSCCCTTCEEEESSSSCC
T ss_pred cEEEEEEEEecCCcCcccEEEEEEEEecCCCcEEEecccCCcccCCEEEEehhhhh
Confidence 467888888888888888888888888787 77778888999999988877654
Done!