BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012866
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/446 (49%), Positives = 291/446 (65%), Gaps = 2/446 (0%)
Query: 7 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS + + IVS +
Sbjct: 66 RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125
Query: 67 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
TPS EDL LV+R+Q TGADI+K+ + DI ++AR+F + S QVP I +GER
Sbjct: 126 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 185
Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
GL+S++L KF G L +G+L + V G PT++ L Y I DTKV+G+I KPV
Sbjct: 186 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 245
Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
HSK PI+HN F+ V++NG+YV + VD+L F YSS DFAGFS P+KEA ++ CDE
Sbjct: 246 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDE 305
Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
V PLA++I AVNTI+RR SDGKL+GYNTDC SI+AIED ++ G + S SPLA +
Sbjct: 306 VDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASK 365
Query: 305 MFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
V+ K +GA+VVI + +ERA LA + G A D+ N+ PE G
Sbjct: 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 425
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
+LAN T +GM PN + P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 485
Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIV 450
F+RQA QF +FTG APKE +I+
Sbjct: 486 FVRQAYEQFEIFTGLPAPKELYWQIM 511
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/446 (49%), Positives = 290/446 (65%), Gaps = 2/446 (0%)
Query: 7 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS + + IVS +
Sbjct: 66 RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125
Query: 67 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
TPS EDL LV+R+Q TGADI+K+ + DI ++AR+F + S QVP I +GER
Sbjct: 126 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 185
Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
GL+S++L KF G L +G+L + V G PT++ L Y I DTKV+G+I KPV
Sbjct: 186 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 245
Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
HSK PI+HN F+ V++NG+YV + VD+L F YSS DFAGFS P+KEA ++ CDE
Sbjct: 246 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQXCDE 305
Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
V PLA++I AVNTI+RR SDGKL+GYNTD SI+AIED ++ G + S SPLA +
Sbjct: 306 VDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSPLASK 365
Query: 305 MFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
V+ K +GA+VVI + +ERA LA + G A D+ N+ PE G
Sbjct: 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 425
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
+LAN T +GM PN + P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 485
Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIV 450
F+RQA QF +FTG APKE +I+
Sbjct: 486 FVRQAYEQFEIFTGLPAPKELYWQIM 511
>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
pdb|1NVT|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
Length = 287
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 145/296 (48%), Gaps = 27/296 (9%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
INA TKV GLI PV HS PI+HN F+ N +YV V ++LK +
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
GF+V P+K +MK+ DE+ AQ I AVNTI + DGK IGYNTD + A+E+ I
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
KN ++ ++ ++I + E+A++LA ++
Sbjct: 125 RVKDKN--------------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEI 170
Query: 347 -------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDYQLVFDA 398
G F L+ + I+ NATP+GM+PN D P V E LR+ +V D
Sbjct: 171 AEKLNKKFGEEVKFSG-LDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
+Y P +T LLK+A+ A ++G+ M + Q F ++TG E E M+ ++ K
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKI 285
>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis
pdb|3DOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis Complexed With Shikimate
Length = 277
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 38/290 (13%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPMF-VDDLKKFFSTYSSPDFAGFSV 230
F +I P+ HS P++H+ F+ +N Y I VP+ D+KK S S GF+V
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKS---IDGFNV 59
Query: 231 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK--ER 288
P+KE ++ + D+++ A+++ AVNT++ + DGK IGYNTD + ++ + E
Sbjct: 60 TIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIED 117
Query: 289 GY----KNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS 344
Y G AS G +A ++ + + + I I+ A+S
Sbjct: 118 AYILILGAGGASKG--IANELYKI-VRPTLTVANRTMSRFNNWSLNINKINLSHAES--- 171
Query: 345 DVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK 404
++ I+ N TP GM+ NTD V +S L + LV D VY P K
Sbjct: 172 ---------------HLDEFDIIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYK 215
Query: 405 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
T +L +AE G I +G++MF+ Q F ++T E + M+ IV+ K
Sbjct: 216 TPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQKL 265
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 17/282 (6%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 231
KV+GLI PV HS P++HN F + Y V+ + + + AG +V
Sbjct: 24 KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
P+K AV+ F DEV A+ I AVNTII +DG+L+GYNTD + A+E+ +
Sbjct: 84 IPHKLAVIPFLDEVDEHARRIGAVNTIIN--NDGRLVGYNTDGLGYVQALEEEM------ 135
Query: 292 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAAR 351
N T R+ V+ + R+ + + E+A+ L +
Sbjct: 136 NITLD-----GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS 190
Query: 352 PFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLK 409
+ + + I+ N T +GMHP + P+S E LR +V D +Y P +T+ LK
Sbjct: 191 AYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLK 250
Query: 410 DAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451
+A+A GA + +GV M + Q F +TG+ M+++V+
Sbjct: 251 EAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVI 292
>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|B Chain B, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|C Chain C, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|D Chain D, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|E Chain E, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|F Chain F, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|G Chain G, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|H Chain H, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TNL|A Chain A, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|B Chain B, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|C Chain C, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|D Chain D, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad
Length = 315
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 166 VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSP 223
E I T++ GLI+ P+ HS P +HN F + + +Y+ V D LK + +
Sbjct: 30 TERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAM 89
Query: 224 DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIED 283
+ G++V P K + K+ D++ P A+ + AVNT++ DG L G+ TD + A+++
Sbjct: 90 NLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN--DDGVLTGHITDGTGYMRALKE 147
Query: 284 AIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDI--DF---- 336
A G + G+ + G + + IF+ DF
Sbjct: 148 A-------------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANA 194
Query: 337 ----ERAKSLASDVMGAARPFEDILNFQPE--KGAILANATPLGMHP-NTDRVPVSEETL 389
E+ S +D ED + E + I NAT +GM P + + S + L
Sbjct: 195 EKTVEKINS-KTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML 253
Query: 390 RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
R +V D VY P KTRLL+ AE G ++G+ M L Q F ++T KE P ++++EI
Sbjct: 254 RPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEI 313
Query: 450 VL 451
+
Sbjct: 314 LF 315
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 31/280 (11%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
INA T+++G+I PV HS P+ N R+ N +Y+ + ++LKK F + +
Sbjct: 2 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G +V P+KE ++ D V A+ I AVNT+ + +GK GYNTD + +++ I
Sbjct: 62 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
E K+ G+ A R + GA+V +++ E+A LA
Sbjct: 120 EVKEKS-ILVLGAGGASRAVIYALV------------KEGAKVFLWNRTKEKAIKLAQKF 166
Query: 347 MGAARPFEDILNFQPE----KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
P E ++N PE K ++ N T +G+ + D + + ++ +V D +Y
Sbjct: 167 -----PLE-VVN-SPEEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY-- 216
Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 442
++T+LLK A+ GA ++ G+ M L Q I F ++ G E P
Sbjct: 217 KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 256
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 31/280 (11%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
INA T+++G+I PV HS P+ N R+ N +Y+ + ++LKK F + +
Sbjct: 8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G +V P+KE ++ D V A+ I AVNT+ + +GK GYNTD + +++ I
Sbjct: 68 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
E K+ G+ A R + GA+V +++ E+A LA
Sbjct: 126 EVKEKS-ILVLGAGGASRAVIYALV------------KEGAKVFLWNRTKEKAIKLAQKF 172
Query: 347 MGAARPFEDILNFQPE----KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
P E ++N PE K ++ N T +G+ + D + + ++ +V D +Y
Sbjct: 173 -----PLE-VVN-SPEEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY-- 222
Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 442
++T+LLK A+ GA ++ G+ M L Q I F ++ G E P
Sbjct: 223 KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 262
>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
Length = 312
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 130/302 (43%), Gaps = 40/302 (13%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSP----- 223
+ A ++ GL++ P+ HS P + N Y+ VD+ +T++S
Sbjct: 27 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN-----TTFASAIEGLK 81
Query: 224 --DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 281
G V P K+ ++ DE+ P A+ + A+NTI+ DG L GYNTD I AI
Sbjct: 82 ALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI 139
Query: 282 EDAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFE 337
KE G+ + G+ VL G + + D FE
Sbjct: 140 ----KESGFD---------MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFE 186
Query: 338 RAKSLA------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETL 389
+A + A +D + D F + IL N T +GM P + + + +L
Sbjct: 187 KAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSL 246
Query: 390 -RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
R LV + VY P T+LL+ A+ AG + G M L Q QF L+TGK P +++++
Sbjct: 247 LRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQ 306
Query: 449 IV 450
++
Sbjct: 307 VM 308
>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From
Corynebacterium Glutamicum
Length = 302
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 43/302 (14%)
Query: 172 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 222
D+ + GLI + + S+ P +H +R ++ G DLK
Sbjct: 22 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 79
Query: 223 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
F G ++ PYK+AV+ DEV A + AVNT++ + G G+NTD +E
Sbjct: 80 LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 138
Query: 283 DAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSL 342
+ + A S + + K + + D+D RA++L
Sbjct: 139 EGLPN-------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQ-----VADLDTSRAQAL 186
Query: 343 ASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETLR 390
A + A AR ED++ G + NATP+GM HP T L
Sbjct: 187 ADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCLT 239
Query: 391 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
V D VY P +T LLK A A G + G M + QA+ F LFTG E MRE
Sbjct: 240 KDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETF 299
Query: 451 LA 452
L+
Sbjct: 300 LS 301
>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Nad
pdb|3JYP|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Quinate And Nadh
pdb|3JYQ|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Shikimate And Nadh
Length = 283
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 43/302 (14%)
Query: 172 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 222
D+ + GLI + + S+ P +H +R ++ G DLK
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 60
Query: 223 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
F G ++ PYK+AV+ DEV A + AVNT++ + G G+NTD +E
Sbjct: 61 LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 119
Query: 283 DAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSL 342
+ + A S + + K + + D+D RA++L
Sbjct: 120 EGLPN-------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQ-----VADLDTSRAQAL 167
Query: 343 ASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETLR 390
A + A AR ED++ G + NATP+GM HP T L
Sbjct: 168 ADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCLT 220
Query: 391 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
V D VY P +T LLK A A G + G M + QA+ F LFTG E MRE
Sbjct: 221 KDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETF 280
Query: 451 LA 452
L+
Sbjct: 281 LS 282
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 117/272 (43%), Gaps = 39/272 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY---------VPMFVDDLKKFFSTYSSPDFA 226
F ++ PV HS P +H + G Y +P + ++++ F
Sbjct: 4 FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFR-------- 55
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G ++ P KEA + D V P AQ I AVNT+++ +G+L G+NTD + A++
Sbjct: 56 GVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALKAG-- 111
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
G PL G VL ++ G V +++ +RA +LA +
Sbjct: 112 -----------GIPLKGPALVLGAGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEF 159
Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
A P E + + +L NAT +G+ + P+ E + D VY P TR
Sbjct: 160 GLRAVPLE-----KAREARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTR 213
Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 438
L++A+A G + +G+ M Q F L+TG
Sbjct: 214 FLREAKAKGLKVQTGLPMLAWQGALAFRLWTG 245
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 35/288 (12%)
Query: 169 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 227
IN DT++ L +P G HN + + N IY D++ + G
Sbjct: 2 INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 287
+V P+KE M F DE+HP AQAI +VNTI+ +G L YNTD A + I E
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVN--DNGFLRAYNTDYIAIVKLI-----E 112
Query: 288 RGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV- 346
+ + N A +G M ++ + FE+ K A +V
Sbjct: 113 KYHLNKNAKVIVHGSGGM------------------AKAVVAAFKNSGFEKLKIYARNVK 154
Query: 347 ----MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--EETLRDYQLVFDAVY 400
+ A + I + + ++ IL N T +GM + + ++ + + + + FD V
Sbjct: 155 TGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA 214
Query: 401 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
P +T ++ A+A G +SG + + QA+ QF L+T + E + E
Sbjct: 215 MPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAE 262
>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
pdb|1VI2|B Chain B, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
Length = 300
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 30/296 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 226
+ A ++ GL + P+ HS P N Y VD+ +
Sbjct: 5 VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 64
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G V P K+ ++ DE+ P A+ + A+NTI+ DG L GYNTD I AI K
Sbjct: 65 GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 118
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFERAKSL 342
E G+ + G+ VL G + + D F++A +
Sbjct: 119 ESGFD---------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 169
Query: 343 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 393
A +D + D F + IL N T +G P + V++ L
Sbjct: 170 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGL 229
Query: 394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
LV + VY P T+LL+ A+ AG + G L Q QF L+TGK+ P E+++++
Sbjct: 230 LVTECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 285
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 29/267 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPMFVDDLKKFFSTYSSPD 224
++ +T ++GLI + +GHS +H F V GIY VP + LK+ T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIK 58
Query: 225 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 284
G +V PYK VMK E+ A+ I AVNT+ + S + G+NTD
Sbjct: 59 CGGLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDY---------- 106
Query: 285 IKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS 344
G+ + F + + V+ K A+ + R S
Sbjct: 107 ---IGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYV---VTRNPEKTS 160
Query: 345 DVMGAAR--PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
++ G + ++++ N KG ++ N TP GM+P PV +E + + D +Y P
Sbjct: 161 EIYGEFKVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP 217
Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQA 429
+T LK A +G V+G+ M + QA
Sbjct: 218 VETLFLKYARESGVKAVNGLYMLVSQA 244
>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1NPD|B Chain B, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1O9B|A Chain A, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
pdb|1O9B|B Chain B, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
Length = 288
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 30/296 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 226
+ A ++ GL + P+ HS P N Y VD+ +
Sbjct: 3 VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 62
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G V P K+ ++ DE+ P A+ + A+NTI+ DG L GYNTD I AI K
Sbjct: 63 GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 116
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFERAKSL 342
E G+ + G+ VL G + + D F++A +
Sbjct: 117 ESGFD---------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 167
Query: 343 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 393
A +D + D F + IL N T +G P + V++ L
Sbjct: 168 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGL 227
Query: 394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
LV + VY P T+LL+ A+ AG + G L Q QF L+TGK+ P E+++++
Sbjct: 228 LVTECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 283
>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHG|B Chain B, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHH|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate
pdb|3PHI|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHI|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHJ|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
pdb|3PHJ|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
Length = 269
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 45/290 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREI 449
T L A+ G +M + QA F F+ + P E MR +
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSV 262
>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
pdb|4FOO|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
Length = 271
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
T L A+ G +M + +A F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FR5|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
+P K A ++ NAT +H + +P+++E L+ Y +L +D + +
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGF 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
T L A+ G +M + QA F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
pdb|4FPX|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
Length = 271
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
T L A+ G +M + A F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYNAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
T L A+ G +M + A F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FQ8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
+P K A ++ NAT +H + +P+++E L+ Y +L +D +
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LAAGF 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
T L A+ G +M + QA F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 34/283 (12%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSS-PDF 225
I T++ ++ P+ K P N F H N N +P+ + + L F T +
Sbjct: 2 IRGSTELVAIVGSPIAQVKSPQNFNTWFNHNNCNLAMLPIDLHEAALDSFADTLRGWQNL 61
Query: 226 AGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAI 285
G V PYK+A+ D + A A+ ++N +IRR DG+L+G N D + A
Sbjct: 62 RGCVVTVPYKQALANRVDGLSERAAALGSIN-VIRRERDGRLLGDNVDGAGFL----GAA 116
Query: 286 KERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASD 345
+ G++ P R V+ ++ A + + D R ++ +
Sbjct: 117 HKHGFE--------PAGKRALVIGCGGVGSAIAYALAEAGIASITLCDPSTARMGAVC-E 167
Query: 346 VMGAARP-------FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQ---LV 395
++G P F + +F ++ANA+P+GM + +P+S L Q LV
Sbjct: 168 LLGNGFPGLTVSTQFSGLEDFD-----LVANASPVGMGTRAE-LPLSAALLATLQPDTLV 221
Query: 396 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 438
D V +P T LL A G I +G EM Q +G F G
Sbjct: 222 ADVVTSPEITPLLNRARQVGCRIQTGPEMAFAQ-LGHLGAFMG 263
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 63/301 (20%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
K FG+ P+ HSK P++HN F + + + G Y P+ + + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE + CD++ +A A++NT++ + +L+GYNTD ++K +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDA----LGFYLSLKHQN 117
Query: 290 YKN----GTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFD-----IDFERAK 340
Y+N G+ LA + K +G +V + + +DF +
Sbjct: 118 YQNALILGSGGSAKALACGL-----------------KKQGLKVSVLNRSPRGLDF--FQ 158
Query: 341 SLASDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QL 394
L D +P K A ++ NAT ++ + +P+++E L+ Y +L
Sbjct: 159 RLGCDCF-----------MEPPKSAFDLIINATSASLN---NELPLNKEVLKGYFKEAKL 204
Query: 395 VFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIV 450
+D Y T L A+ G +M + QA F F+ + P E MR +
Sbjct: 205 AYDLAYG-FLTPFLALAKELKIPFQDGKDMLIYQASLSFEKFSASQIPYSKAFEVMRSVF 263
Query: 451 L 451
L
Sbjct: 264 L 264
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 229
+ + P+ HSK P +H R + IY VP+ F + K FF+ G +
Sbjct: 32 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 87
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE +F D + A+ AVNT +++ DG+++G NTD E ++D + ++
Sbjct: 88 VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 143
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 348
G + ++ + A + + + F +A+ LA V
Sbjct: 144 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 194
Query: 349 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
A+ FE + + ++ N+T G P D V S + + +D +Y
Sbjct: 195 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 245
Query: 403 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 449
T + A G A + G+ M + QA F L+ G + K+ +RE+
Sbjct: 246 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 294
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 229
+ + P+ HSK P +H R + IY VP+ F + K FF+ G +
Sbjct: 11 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 66
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE +F D + A+ AVNT +++ DG+++G NTD E ++D + ++
Sbjct: 67 VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 122
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 348
G + ++ + A + + + F +A+ LA V
Sbjct: 123 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 173
Query: 349 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
A+ FE + + ++ N+T G P D V S + + +D +Y
Sbjct: 174 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 224
Query: 403 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 449
T + A G A + G+ M + QA F L+ G + K+ +RE+
Sbjct: 225 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 273
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 229
+ + P+ HSK P +H R + IY VP+ F + K FF+ G +
Sbjct: 5 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 60
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
V P+KE +F D + A+ AVNT +++ DG+++G NTD E ++D + ++
Sbjct: 61 VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 116
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 348
G + ++ + A + + + F +A+ LA V
Sbjct: 117 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 167
Query: 349 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
A+ FE + + ++ N+T G P D V S + + +D +Y
Sbjct: 168 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 218
Query: 403 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 449
T + A G A + G+ M + QA F L+ G + K+ +RE+
Sbjct: 219 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 267
>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Thermotoga Maritima
Length = 253
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 47/286 (16%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VP--MFVDDLKKFFSTYSSPDFAGFS 229
F +I PV HS P L+N F+ N Y +P F ++++ Y GF+
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
P+KE VM++ + AQ I AVN + R GK GYNTD + ++E +
Sbjct: 58 ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSLEGVEVKE- 109
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDIDFERAKSLASDVMG 348
G ++ L G + + + + ERAK+L V
Sbjct: 110 -PVVVVGAGGAARAVIYALL--------------QMGVKDIWVVNRTIERAKALDFPV-- 152
Query: 349 AARPFE-DILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 407
+ F D L+ +K L N T +GM + +PVS+++L++ LV+D +Y T L
Sbjct: 153 --KIFSLDQLDEVVKKAKSLFNTTSVGM--KGEELPVSDDSLKNLSLVYDVIYF--DTPL 206
Query: 408 LKDAEAAGAI-IVSGVEMFLRQAIGQFNLF--TGKEAPKEFMREIV 450
+ A G I+ G MF QA+ ++ +E KE E++
Sbjct: 207 VVKARKLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEVL 252
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPM--FVDDLKKFFSTYSSPDFAG 227
+ + + P+ HSK P +H + +N Y + P+ F++ L FFS G
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGK----G 57
Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
+V P+KE DE+ A AVNT++R DG+L+G NTD ++ +E
Sbjct: 58 ANVTVPFKEEAFARADELTERAALAGAVNTLMRL-EDGRLLGDNTDGVGLLSDLE 111
>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1QFE|B Chain B, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1L9W|A Chain A, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|B Chain B, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|C Chain C, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|D Chain D, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1GQN|A Chain A, Native 3-Dehydroquinase From Salmonella Typhi
Length = 252
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 35 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDC-ETPSEEDLGYLVSRMQATGADIIK 93
D +D EL + + ++V N D +TPS E++ + +MQA GADI K
Sbjct: 111 DMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPK 170
Query: 94 LVF---SVNDI-TEIARIFQLLSH-CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+ S +D+ T + ++ H P+I S+ + G++S+L F A +G++K
Sbjct: 171 IAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQ 230
Query: 149 TPVLGLPTVESLRQTYKVEH 168
G V LR + H
Sbjct: 231 ASAPGQIAVNDLRSVLMILH 250
>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas
Putida
Length = 272
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 24/269 (8%)
Query: 176 FGLISKPVGHSKGPILH----NPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG 231
+ +I +P+ H+K P++H + + + Y I + DD + + S G ++
Sbjct: 5 YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSL--DDFEAQVLQFRSEGGKGMNIT 62
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
P+K + D AQ A N + + DG+++ N D + IE+
Sbjct: 63 APFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEE-------- 112
Query: 292 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRG-ARVVIFDIDFERAKSLASDVMGAA 350
+ G PL R +L G + +VI + D +A +L +++ +
Sbjct: 113 ----NLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSR 168
Query: 351 RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD 410
+ + I+ NAT + D P+ + L + L ++ Y T L+
Sbjct: 169 LRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTPFLRL 226
Query: 411 AEAAG-AIIVSGVEMFLRQAIGQFNLFTG 438
A G A + GV M + QA F + G
Sbjct: 227 AREQGQARLADGVGMLVEQAAEAFAWWRG 255
>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|E Chain E, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|F Chain F, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3OEX|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|4GFS|A Chain A, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GFS|B Chain B, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GUI|A Chain A, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUI|B Chain B, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUJ|A Chain A, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
pdb|4GUJ|B Chain B, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
Length = 255
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35 DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
D +D EL + + +HQ I+S + +TP+ E++ + +MQ GADI K
Sbjct: 114 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 173
Query: 94 LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+ ++ + Q PII S+ + G++S+L F A +G++K
Sbjct: 174 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 233
Query: 149 TPVLGLPTVESLRQTYKVEH 168
G +V LR + H
Sbjct: 234 ASAPGQISVADLRTVLTILH 253
>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
pdb|3O1N|B Chain B, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
Length = 276
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35 DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
D +D EL + + +HQ I+S + +TP+ E++ + +MQ GADI K
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 194
Query: 94 LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+ ++ + Q PII S+ + G++S+L F A +G++K
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
G +V LR + H
Sbjct: 255 ASAPGAISVADLRTVLTILH 274
>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3L2I|B Chain B, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3LB0|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3LB0|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3S42|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
pdb|3S42|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
Length = 276
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35 DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
D +D EL + + +HQ I+S + +TP+ E++ + +MQ GADI K
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 194
Query: 94 LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+ ++ + Q PII S+ + G++S+L F A +G++K
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
G +V LR + H
Sbjct: 255 ASAPGQISVADLRTVLTILH 274
>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
Length = 276
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35 DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
D +D EL + + +HQ I+S + +TP+ E++ + +MQ GADI K
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 194
Query: 94 LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+ ++ + Q PII S+ + G++S+L F A +G++K
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
G +V LR + H
Sbjct: 255 ASAPGQISVADLRTVLTILH 274
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 34 ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 92
D +D EL + ++ + + +H+ + I+S + +TP +E++ + RMQ GAD+
Sbjct: 114 VDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLP 173
Query: 93 KLVFSVNDITEIARIFQLLS-----HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK 147
K+ + ++ + + + + PII S+ G++S+L F AL +G+ K
Sbjct: 174 KIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAK 233
Query: 148 GTPVLGLPTVESLRQTYKVEH 168
G + + L + H
Sbjct: 234 SVSAPGQISFKELNSVLNLLH 254
>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
Length = 276
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 35 DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
D +D EL + + +HQ I+S + +TP+ E++ + +MQ GADI
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPM 194
Query: 94 LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+ ++ + Q PII S+ + G++S+L F A +G++K
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
G +V LR + H
Sbjct: 255 ASAPGQISVADLRTVLTILH 274
>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P74|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P77|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) From
Haemophilus Influenzae
Length = 272
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 175 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF--VDDLKKFFSTYSSPDFAGFSVGF 232
++ + P+ SK P++ N + Y+ +D ++ + G ++
Sbjct: 3 LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 233 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
P+KE + DE A+ A NT +++ DGKL NTD +T ++
Sbjct: 63 PFKERAYQLADEYSQRAKLAEACNT-LKKLDDGKLYADNTDGIGLVTDLQ 111
>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
pdb|2OX1|B Chain B, Archaeal Dehydroquinase
pdb|2OX1|C Chain C, Archaeal Dehydroquinase
pdb|2OX1|D Chain D, Archaeal Dehydroquinase
Length = 196
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 12 GGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 70
GG +EGDE +R+E + A D L DYVD E + S+ R I S +
Sbjct: 50 GGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPD-------SAFDFNCRIIESYHNFIR 102
Query: 71 TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVS 130
TP +L +V + I + S D+ I RI ++A+ +GER +
Sbjct: 103 TPDYSELKGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYDD----VVAFLMGERFSFT 158
Query: 131 QLLSPKFNGALVYGSLKGTP 150
++L+ +Y + G+P
Sbjct: 159 RVLAAYLGSPFIYCYV-GSP 177
>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
pdb|1SFJ|B Chain B, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
Length = 238
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 7 RPKWAGGL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQ---YSSHQSGTRF 61
R K GG + D + L + LA G D +D E + +I Q Q
Sbjct: 70 RTKLQGGYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEV 128
Query: 62 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQ 115
I+S + TP ++L ++ +MQ + +KL ++ ++ + Q +S C+
Sbjct: 129 IISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCK 188
Query: 116 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTP 150
V + S+ + GL+S+ F GAL YG + G P
Sbjct: 189 V--VGISMSKLGLISRTAQGVFGGALTYGCI-GEP 220
>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
pdb|1SFL|B Chain B, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
Length = 238
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 7 RPKWAGGL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQ---YSSHQSGTRF 61
R K GG + D + L + LA G D +D E + +I Q Q
Sbjct: 70 RTKLQGGYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEV 128
Query: 62 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQ 115
I+S + TP ++L ++ +MQ + +KL ++ ++ + Q +S C+
Sbjct: 129 IISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCK 188
Query: 116 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTP 150
V + S+ + GL+S+ F GAL YG + G P
Sbjct: 189 V--VGISMSKLGLISRTAQGVFGGALTYGCI-GEP 220
>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
Length = 257
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 14 LYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETP 72
L E + + +EA+ + GA D VD+EL I + + + +VS + TP
Sbjct: 97 LNEAEVRRLIEAICRS---GAIDLVDYELAYGERIADVRRMTEECSVWLVVSRHYFDGTP 153
Query: 73 SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGL 128
+E L + + + GADI K+ ++ + Q + +P+I ++G G
Sbjct: 154 RKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGA 213
Query: 129 VSQLLSPKFNGALVYG-----SLKGT-PVLGLPTVESLRQTY 164
+++L F A+ + S G P+ + TV S+ QTY
Sbjct: 214 ITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQTY 255
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 17 GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYS-SHQSGTRFIVSC-NLDCETPSE 74
G E K E L +DY D EL + +L K Y+ + ++G + I+S N + P+
Sbjct: 67 GREVKNREELFEELSPLSDYTDIELS-SRGLLVKLYNITKEAGKKLIISYHNFELTPPN- 124
Query: 75 EDLGYLVSRMQATG---ADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQ 131
+++ + G I K+ N ++AR+ + + I S+G+ G +S+
Sbjct: 125 ----WIIREVLREGYRYGGIPKIAVKANSYEDVARLLCISRQVEGEKILISMGDYGKISR 180
Query: 132 LLSPKFNGALVYGSLK 147
L F + Y SL+
Sbjct: 181 LAGYVFGSVITYCSLE 196
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 18 DEHKRLEALHLAEDLGADYV----DFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 70
D KRLEA+ EDLGA + D E++ A +LG++ QSG+ + +L E
Sbjct: 928 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE----QSGSMETIGFSLYME 980
>pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
pdb|4E6P|B Chain B, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
pdb|4E6P|C Chain C, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
pdb|4E6P|D Chain D, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
Length = 259
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 326 GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILA----NATPLGMHPNT-- 379
GA V I DID ERA+ A+++ AA + + Q A +A +A L + N
Sbjct: 32 GATVAIADIDIERARQAAAEIGPAAYAVQXDVTRQDSIDAAIAATVEHAGGLDILVNNAA 91
Query: 380 --DRVPVSEETLRDYQLVF 396
D P+ E T Y+ +F
Sbjct: 92 LFDLAPIVEITRESYEKLF 110
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ +F + S+
Sbjct: 126 TDLPQILFNVPSR 138
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP PT E L Q +K EH
Sbjct: 90 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPTQEGLFQHFKAIAEH 149
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 150 TDLPQILYNVPSR 162
>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
pdb|1S5V|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
Length = 292
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYFNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w
pdb|3DEN|B Chain B, Structure Of E. Coli Dhdps Mutant Y107w
Length = 292
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYWNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 97 SVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGA--LVYGSL-KGTPVLG 153
+++ I I IF L QV I+ S +G++SQ L PK G L YG L T +
Sbjct: 135 AIDTIHRIVDIFPLNQQEQVRIV-LSFILQGIISQRLLPKIGGGRVLAYGLLIPNTAIRN 193
Query: 154 LPTVESLRQTYKV 166
L L+Q Y +
Sbjct: 194 LIRENKLQQVYSL 206
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 168
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 169 INADTKVFGLISK 181
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,018,876
Number of Sequences: 62578
Number of extensions: 538048
Number of successful extensions: 1109
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 66
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)