Query 012866
Match_columns 454
No_of_seqs 277 out of 2212
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02520 bifunctional 3-dehydr 100.0 5E-112 1E-116 896.4 49.6 448 1-451 78-527 (529)
2 PRK09310 aroDE bifunctional 3- 100.0 1.2E-97 3E-102 778.3 46.8 407 1-446 53-463 (477)
3 COG0169 AroE Shikimate 5-dehyd 100.0 6.1E-74 1.3E-78 556.2 31.9 271 169-453 2-280 (283)
4 PRK14027 quinate/shikimate deh 100.0 3.1E-72 6.7E-77 549.0 29.9 265 172-452 3-282 (283)
5 PRK12749 quinate/shikimate deh 100.0 6.1E-72 1.3E-76 548.6 31.3 266 169-450 3-284 (288)
6 PRK12549 shikimate 5-dehydroge 100.0 1.3E-71 2.9E-76 546.3 31.1 266 170-452 2-280 (284)
7 PRK12548 shikimate 5-dehydroge 100.0 2.1E-70 4.6E-75 539.9 30.8 267 169-451 5-288 (289)
8 PRK00258 aroE shikimate 5-dehy 100.0 6.6E-70 1.4E-74 534.2 31.6 269 169-452 1-274 (278)
9 PRK12550 shikimate 5-dehydroge 100.0 1.3E-69 2.8E-74 527.2 32.0 262 168-452 4-269 (272)
10 TIGR01809 Shik-DH-AROM shikima 100.0 4.7E-68 1E-72 521.2 29.7 263 172-450 4-282 (282)
11 TIGR00507 aroE shikimate 5-deh 100.0 1.6E-66 3.5E-71 508.4 31.4 261 174-452 1-267 (270)
12 PRK13575 3-dehydroquinate dehy 100.0 1.4E-43 3E-48 337.8 17.7 166 1-166 64-237 (238)
13 COG0710 AroD 3-dehydroquinate 100.0 1.3E-43 2.9E-48 331.7 17.0 166 1-167 59-228 (231)
14 PRK02412 aroD 3-dehydroquinate 100.0 4.7E-43 1E-47 338.5 17.9 167 1-167 76-249 (253)
15 TIGR01093 aroD 3-dehydroquinat 100.0 7.8E-43 1.7E-47 332.7 17.6 164 1-164 59-228 (228)
16 cd00502 DHQase_I Type I 3-dehy 100.0 3.1E-41 6.7E-46 321.3 18.3 163 1-165 57-224 (225)
17 PF01487 DHquinase_I: Type I 3 100.0 3.9E-42 8.5E-47 327.4 11.0 165 1-165 56-224 (224)
18 PRK13576 3-dehydroquinate dehy 100.0 7.8E-39 1.7E-43 299.5 13.2 152 1-167 53-206 (216)
19 KOG0692 Pentafunctional AROM p 100.0 1E-36 2.3E-41 302.7 -7.5 429 1-449 151-591 (595)
20 PRK01261 aroD 3-dehydroquinate 100.0 1.3E-32 2.8E-37 260.0 14.2 144 1-166 78-225 (229)
21 PF08501 Shikimate_dh_N: Shiki 100.0 4.5E-29 9.8E-34 200.1 6.5 81 178-258 1-83 (83)
22 PRK14192 bifunctional 5,10-met 99.9 8.2E-25 1.8E-29 213.8 18.1 184 176-403 38-235 (283)
23 cd01065 NAD_bind_Shikimate_DH 99.9 8.1E-24 1.8E-28 189.4 18.2 152 272-438 1-155 (155)
24 PF01488 Shikimate_DH: Shikima 99.7 9.5E-17 2E-21 140.8 8.6 98 300-405 9-114 (135)
25 cd05311 NAD_bind_2_malic_enz N 99.6 5.1E-16 1.1E-20 147.8 9.4 126 299-432 21-161 (226)
26 cd01078 NAD_bind_H4MPT_DH NADP 99.6 7.6E-15 1.6E-19 136.6 12.4 166 269-449 3-190 (194)
27 TIGR02853 spore_dpaA dipicolin 99.5 2.1E-13 4.5E-18 134.4 12.2 142 267-426 125-268 (287)
28 TIGR02992 ectoine_eutC ectoine 99.4 1.2E-12 2.7E-17 131.4 9.9 126 250-399 93-224 (326)
29 PRK08291 ectoine utilization p 99.4 1.7E-12 3.6E-17 130.7 9.6 125 250-398 96-226 (330)
30 PRK08306 dipicolinate synthase 99.3 4.1E-12 8.9E-17 125.9 7.9 117 299-426 148-269 (296)
31 PRK13940 glutamyl-tRNA reducta 99.3 1.8E-11 4E-16 126.2 11.2 133 300-440 178-332 (414)
32 COG0373 HemA Glutamyl-tRNA red 99.3 1.3E-11 2.7E-16 125.6 9.8 195 236-446 111-339 (414)
33 PRK00045 hemA glutamyl-tRNA re 99.2 8.5E-12 1.8E-16 129.7 6.9 189 234-440 113-339 (423)
34 PLN00203 glutamyl-tRNA reducta 98.8 1.2E-08 2.7E-13 107.9 10.7 187 235-440 196-428 (519)
35 TIGR01035 hemA glutamyl-tRNA r 98.8 1.6E-08 3.4E-13 105.2 9.9 134 300-441 177-337 (417)
36 PRK14175 bifunctional 5,10-met 98.7 4.9E-07 1.1E-11 88.5 17.0 214 176-434 37-279 (286)
37 PRK06141 ornithine cyclodeamin 98.7 5.1E-08 1.1E-12 97.6 9.9 136 265-423 102-244 (314)
38 COG1748 LYS9 Saccharopine dehy 98.7 5.1E-08 1.1E-12 99.0 7.9 125 304-434 2-142 (389)
39 cd05213 NAD_bind_Glutamyl_tRNA 98.6 3.9E-08 8.5E-13 98.3 6.1 98 301-405 176-278 (311)
40 PRK14194 bifunctional 5,10-met 98.6 2.4E-06 5.2E-11 84.1 17.0 203 193-438 55-287 (301)
41 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 1.3E-06 2.9E-11 81.7 13.5 148 274-439 6-156 (200)
42 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 6.3E-07 1.4E-11 81.4 10.1 78 299-401 40-118 (168)
43 PRK10792 bifunctional 5,10-met 98.5 4.6E-06 9.9E-11 81.5 16.0 202 193-438 55-284 (285)
44 PRK08618 ornithine cyclodeamin 98.5 4.3E-07 9.3E-12 91.4 8.5 89 302-398 126-220 (325)
45 TIGR00518 alaDH alanine dehydr 98.5 5.7E-07 1.2E-11 92.0 9.2 99 301-403 165-271 (370)
46 PRK07340 ornithine cyclodeamin 98.4 2E-06 4.3E-11 85.7 12.0 96 301-404 123-223 (304)
47 PRK14179 bifunctional 5,10-met 98.4 9.8E-06 2.1E-10 79.3 15.5 202 193-437 54-282 (284)
48 cd05191 NAD_bind_amino_acid_DH 98.4 3.8E-06 8.3E-11 67.5 10.3 80 273-398 2-85 (86)
49 PRK14189 bifunctional 5,10-met 98.4 5.5E-06 1.2E-10 81.1 12.9 202 193-437 54-282 (285)
50 PRK14188 bifunctional 5,10-met 98.3 2.9E-06 6.3E-11 83.6 10.8 166 193-402 54-233 (296)
51 PRK14982 acyl-ACP reductase; P 98.3 2.4E-06 5.1E-11 85.9 9.4 109 299-420 151-264 (340)
52 PRK14190 bifunctional 5,10-met 98.3 3.1E-05 6.6E-10 75.8 16.9 203 193-439 54-284 (284)
53 PRK14176 bifunctional 5,10-met 98.3 1.1E-05 2.3E-10 79.0 13.4 183 176-402 43-239 (287)
54 PRK14182 bifunctional 5,10-met 98.2 3E-05 6.5E-10 75.7 15.1 202 193-437 52-281 (282)
55 PRK14180 bifunctional 5,10-met 98.2 4.9E-05 1.1E-09 74.3 16.4 167 193-402 53-233 (282)
56 PRK00676 hemA glutamyl-tRNA re 98.2 4.6E-06 1E-10 83.5 8.8 90 300-406 171-267 (338)
57 PRK14191 bifunctional 5,10-met 98.2 6.4E-05 1.4E-09 73.6 16.5 167 193-402 53-232 (285)
58 PRK14169 bifunctional 5,10-met 98.2 0.00014 3.1E-09 71.1 18.5 214 176-434 35-277 (282)
59 PRK14178 bifunctional 5,10-met 98.2 9.3E-05 2E-09 72.2 17.0 214 176-434 31-272 (279)
60 PLN02819 lysine-ketoglutarate 98.2 2.6E-06 5.6E-11 96.4 7.1 126 302-433 568-721 (1042)
61 PRK14170 bifunctional 5,10-met 98.2 7.5E-05 1.6E-09 73.0 15.8 201 193-436 53-280 (284)
62 PLN02897 tetrahydrofolate dehy 98.1 8.1E-05 1.8E-09 74.3 16.0 218 176-437 91-344 (345)
63 PF03807 F420_oxidored: NADP o 98.1 1.4E-06 3E-11 71.3 2.9 88 305-399 1-94 (96)
64 PLN02616 tetrahydrofolate dehy 98.1 0.00013 2.8E-09 73.2 16.8 202 193-437 125-361 (364)
65 COG0190 FolD 5,10-methylene-te 98.1 5.3E-05 1.2E-09 73.4 13.5 216 176-437 35-280 (283)
66 PLN02516 methylenetetrahydrofo 98.1 0.00012 2.6E-09 72.2 16.1 202 193-437 61-297 (299)
67 PRK14171 bifunctional 5,10-met 98.1 5.4E-05 1.2E-09 74.1 13.6 167 193-402 54-234 (288)
68 PRK14177 bifunctional 5,10-met 98.1 4.3E-05 9.3E-10 74.7 12.8 198 193-433 55-275 (284)
69 PF03435 Saccharop_dh: Sacchar 98.1 1E-06 2.2E-11 90.7 1.6 123 306-434 1-141 (386)
70 PF03446 NAD_binding_2: NAD bi 98.1 1.7E-06 3.6E-11 78.3 2.7 110 304-419 2-116 (163)
71 PRK14168 bifunctional 5,10-met 98.1 9.6E-05 2.1E-09 72.8 15.1 202 193-438 55-296 (297)
72 PRK14184 bifunctional 5,10-met 98.1 0.00023 5.1E-09 69.7 17.6 210 176-434 36-281 (286)
73 COG2084 MmsB 3-hydroxyisobutyr 98.1 4.7E-06 1E-10 81.5 5.8 109 305-418 2-116 (286)
74 PRK14172 bifunctional 5,10-met 98.1 5.6E-05 1.2E-09 73.7 12.6 167 193-402 54-233 (278)
75 PF02826 2-Hacid_dh_C: D-isome 98.1 5.8E-06 1.3E-10 75.9 5.6 119 298-424 31-153 (178)
76 PRK14166 bifunctional 5,10-met 98.0 4.4E-05 9.5E-10 74.6 11.7 183 176-402 35-232 (282)
77 PF00670 AdoHcyase_NAD: S-aden 98.0 3.6E-05 7.7E-10 69.0 10.2 98 298-407 18-118 (162)
78 PRK14186 bifunctional 5,10-met 98.0 6.9E-05 1.5E-09 73.8 13.0 200 193-435 54-284 (297)
79 PRK14187 bifunctional 5,10-met 98.0 0.00012 2.6E-09 72.0 14.3 183 176-402 37-235 (294)
80 PRK14183 bifunctional 5,10-met 98.0 8.5E-05 1.8E-09 72.5 13.0 167 193-402 53-232 (281)
81 PRK14185 bifunctional 5,10-met 98.0 0.00013 2.7E-09 71.8 13.9 167 193-402 53-236 (293)
82 PRK14181 bifunctional 5,10-met 98.0 7.6E-05 1.6E-09 73.1 11.9 168 192-402 47-232 (287)
83 PRK14173 bifunctional 5,10-met 98.0 8.9E-05 1.9E-09 72.7 12.2 167 193-402 51-230 (287)
84 PRK14193 bifunctional 5,10-met 98.0 0.00019 4E-09 70.3 14.3 167 193-402 54-235 (284)
85 PLN02928 oxidoreductase family 97.9 2E-05 4.3E-10 80.0 7.6 75 299-374 155-237 (347)
86 PRK06046 alanine dehydrogenase 97.9 3.4E-05 7.3E-10 77.7 9.2 93 303-403 129-228 (326)
87 PRK14167 bifunctional 5,10-met 97.9 0.0001 2.2E-09 72.6 12.1 204 193-439 53-292 (297)
88 PRK14174 bifunctional 5,10-met 97.9 0.00027 5.8E-09 69.7 14.4 167 193-402 53-238 (295)
89 cd05212 NAD_bind_m-THF_DH_Cycl 97.9 0.00014 3.1E-09 64.0 10.6 80 298-402 23-103 (140)
90 PRK13243 glyoxylate reductase; 97.8 4.1E-05 8.8E-10 77.3 7.6 70 299-374 146-215 (333)
91 TIGR00872 gnd_rel 6-phosphoglu 97.8 2.6E-05 5.6E-10 77.6 5.9 110 305-419 2-115 (298)
92 PF02423 OCD_Mu_crystall: Orni 97.8 4.8E-05 1E-09 76.2 7.3 96 303-403 128-229 (313)
93 PRK06823 ornithine cyclodeamin 97.8 7.9E-05 1.7E-09 74.6 8.6 94 303-403 128-227 (315)
94 TIGR02371 ala_DH_arch alanine 97.8 9.8E-05 2.1E-09 74.3 9.3 94 303-403 128-227 (325)
95 PRK06407 ornithine cyclodeamin 97.8 7.1E-05 1.5E-09 74.5 7.8 94 303-403 117-217 (301)
96 PF02882 THF_DHG_CYH_C: Tetrah 97.8 0.00013 2.7E-09 65.7 8.5 81 298-403 31-112 (160)
97 PRK06199 ornithine cyclodeamin 97.7 8.1E-05 1.8E-09 76.3 7.6 115 265-396 132-256 (379)
98 PRK00141 murD UDP-N-acetylmura 97.7 0.00022 4.8E-09 75.5 11.1 96 300-424 12-107 (473)
99 cd05291 HicDH_like L-2-hydroxy 97.7 9.6E-05 2.1E-09 73.8 7.8 72 304-377 1-82 (306)
100 COG0300 DltE Short-chain dehyd 97.7 0.00016 3.5E-09 70.1 8.9 77 301-377 4-98 (265)
101 TIGR01505 tartro_sem_red 2-hyd 97.7 6.5E-05 1.4E-09 74.3 6.4 111 305-421 1-117 (291)
102 PRK09599 6-phosphogluconate de 97.7 7.8E-05 1.7E-09 74.2 6.6 110 305-419 2-116 (301)
103 COG0287 TyrA Prephenate dehydr 97.7 5.2E-05 1.1E-09 74.4 5.2 117 304-425 4-125 (279)
104 PRK07589 ornithine cyclodeamin 97.6 0.00019 4.1E-09 72.6 9.0 96 303-403 129-230 (346)
105 cd01079 NAD_bind_m-THF_DH NAD 97.6 0.00012 2.6E-09 67.4 6.7 98 298-402 57-159 (197)
106 PTZ00075 Adenosylhomocysteinas 97.6 0.00035 7.7E-09 72.9 11.0 92 298-401 249-343 (476)
107 PRK07502 cyclohexadienyl dehyd 97.6 6.6E-05 1.4E-09 74.9 5.4 117 303-425 6-127 (307)
108 PRK06718 precorrin-2 dehydroge 97.6 0.00012 2.6E-09 68.6 6.8 74 299-373 6-80 (202)
109 PRK15461 NADH-dependent gamma- 97.6 0.00013 2.9E-09 72.4 7.4 107 305-417 3-115 (296)
110 TIGR02356 adenyl_thiF thiazole 97.6 9.8E-05 2.1E-09 69.2 6.0 71 301-372 19-120 (202)
111 TIGR00561 pntA NAD(P) transhyd 97.6 0.00032 6.8E-09 74.2 10.3 99 301-403 162-288 (511)
112 PLN02350 phosphogluconate dehy 97.6 0.00014 3.1E-09 76.8 7.5 110 304-417 7-127 (493)
113 PRK05476 S-adenosyl-L-homocyst 97.6 0.00024 5.3E-09 73.6 8.9 92 299-402 208-302 (425)
114 PRK12490 6-phosphogluconate de 97.6 9.8E-05 2.1E-09 73.4 5.7 111 305-420 2-117 (299)
115 KOG0409 Predicted dehydrogenas 97.6 0.00015 3.2E-09 70.5 6.5 111 302-419 34-152 (327)
116 COG2423 Predicted ornithine cy 97.6 0.00036 7.8E-09 69.9 9.5 114 303-423 130-251 (330)
117 PRK14106 murD UDP-N-acetylmura 97.6 0.00055 1.2E-08 71.9 11.5 99 301-428 3-105 (450)
118 PRK11559 garR tartronate semia 97.6 0.00015 3.2E-09 71.9 6.8 111 304-420 3-119 (296)
119 PRK12480 D-lactate dehydrogena 97.6 0.0001 2.2E-09 74.4 5.6 117 299-426 142-262 (330)
120 PRK03369 murD UDP-N-acetylmura 97.5 0.00051 1.1E-08 73.1 10.8 96 301-426 10-105 (488)
121 PRK08328 hypothetical protein; 97.5 0.00012 2.6E-09 70.1 5.4 43 301-343 25-68 (231)
122 PRK13302 putative L-aspartate 97.5 0.00021 4.5E-09 70.1 6.9 107 303-418 6-119 (271)
123 PRK01438 murD UDP-N-acetylmura 97.5 0.00098 2.1E-08 70.7 12.3 98 299-425 12-112 (480)
124 PRK06436 glycerate dehydrogena 97.5 0.00027 5.7E-09 70.4 7.2 67 299-374 118-184 (303)
125 PRK15469 ghrA bifunctional gly 97.5 8.7E-05 1.9E-09 74.2 3.7 69 299-373 132-200 (312)
126 PRK02472 murD UDP-N-acetylmura 97.5 0.00057 1.2E-08 71.7 9.9 38 301-338 3-40 (447)
127 PRK08655 prephenate dehydrogen 97.5 7E-05 1.5E-09 78.4 2.9 113 305-424 2-118 (437)
128 PRK08605 D-lactate dehydrogena 97.4 0.0002 4.4E-09 72.2 6.0 117 299-425 142-263 (332)
129 PRK08410 2-hydroxyacid dehydro 97.4 0.00032 6.8E-09 70.2 7.2 114 299-425 141-258 (311)
130 PRK07574 formate dehydrogenase 97.4 0.00018 3.8E-09 73.9 5.4 71 299-373 188-258 (385)
131 PF07991 IlvN: Acetohydroxy ac 97.4 0.00027 5.8E-09 63.2 5.8 69 301-373 2-70 (165)
132 PRK08762 molybdopterin biosynt 97.4 0.00019 4.1E-09 73.8 5.6 71 301-372 133-234 (376)
133 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0027 5.8E-08 60.6 13.0 131 273-423 10-160 (227)
134 PF01210 NAD_Gly3P_dh_N: NAD-d 97.4 0.00027 5.9E-09 63.4 5.9 69 305-374 1-80 (157)
135 PRK05479 ketol-acid reductoiso 97.4 0.00037 8.1E-09 69.9 7.1 71 299-373 13-83 (330)
136 PRK07679 pyrroline-5-carboxyla 97.4 0.00032 6.8E-09 69.1 6.4 129 304-438 4-137 (279)
137 PLN03139 formate dehydrogenase 97.4 0.00022 4.8E-09 73.2 5.4 71 299-373 195-265 (386)
138 cd00401 AdoHcyase S-adenosyl-L 97.4 0.00051 1.1E-08 71.0 8.0 70 298-372 197-266 (413)
139 PRK06719 precorrin-2 dehydroge 97.4 0.00038 8.2E-09 62.6 6.1 72 298-372 8-79 (157)
140 PRK07417 arogenate dehydrogena 97.4 0.0003 6.4E-09 69.3 5.9 112 305-425 2-115 (279)
141 PRK12475 thiamine/molybdopteri 97.4 0.00034 7.3E-09 70.8 6.3 71 301-372 22-125 (338)
142 PRK15438 erythronate-4-phospha 97.3 0.00055 1.2E-08 70.0 7.7 68 298-374 111-178 (378)
143 COG4221 Short-chain alcohol de 97.3 0.00063 1.4E-08 64.7 7.4 72 301-373 4-91 (246)
144 COG1052 LdhA Lactate dehydroge 97.3 0.00048 1E-08 69.1 7.1 71 298-374 141-211 (324)
145 PRK06476 pyrroline-5-carboxyla 97.3 0.00037 8.1E-09 67.7 6.0 101 305-413 2-106 (258)
146 PRK09424 pntA NAD(P) transhydr 97.3 0.00097 2.1E-08 70.7 9.4 97 301-401 163-287 (509)
147 PLN02256 arogenate dehydrogena 97.3 0.00035 7.5E-09 69.7 5.7 118 301-425 34-154 (304)
148 TIGR00873 gnd 6-phosphoglucona 97.3 0.00027 5.8E-09 74.5 5.1 109 306-418 2-119 (467)
149 COG0111 SerA Phosphoglycerate 97.3 0.00059 1.3E-08 68.5 7.2 156 212-373 35-207 (324)
150 PRK00257 erythronate-4-phospha 97.3 0.00057 1.2E-08 70.1 7.0 39 298-336 111-149 (381)
151 PRK15409 bifunctional glyoxyla 97.3 0.00067 1.4E-08 68.2 7.3 70 299-374 141-211 (323)
152 PLN02494 adenosylhomocysteinas 97.2 0.00091 2E-08 69.8 8.1 90 299-400 250-342 (477)
153 PRK06487 glycerate dehydrogena 97.2 0.00064 1.4E-08 68.2 6.7 64 299-373 144-207 (317)
154 COG2085 Predicted dinucleotide 97.2 0.0006 1.3E-08 63.5 6.0 91 304-402 2-95 (211)
155 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0074 1.6E-07 57.2 13.6 139 274-427 3-155 (217)
156 PRK07634 pyrroline-5-carboxyla 97.2 0.00069 1.5E-08 65.1 6.7 70 303-375 4-78 (245)
157 PRK08644 thiamine biosynthesis 97.2 0.00064 1.4E-08 64.2 6.1 35 301-335 26-61 (212)
158 PLN02712 arogenate dehydrogena 97.2 0.00055 1.2E-08 75.3 6.4 118 301-425 50-170 (667)
159 PRK13581 D-3-phosphoglycerate 97.2 0.00071 1.5E-08 72.6 7.1 70 299-374 136-205 (526)
160 PRK13304 L-aspartate dehydroge 97.2 0.00055 1.2E-08 66.9 5.8 105 305-417 3-115 (265)
161 PRK06932 glycerate dehydrogena 97.2 0.00073 1.6E-08 67.7 6.6 66 299-374 143-208 (314)
162 PRK13403 ketol-acid reductoiso 97.2 0.00076 1.6E-08 67.1 6.5 70 299-373 12-81 (335)
163 TIGR01327 PGDH D-3-phosphoglyc 97.2 0.0011 2.3E-08 71.2 8.1 71 299-374 134-204 (525)
164 PF13241 NAD_binding_7: Putati 97.2 0.00079 1.7E-08 56.0 5.6 67 299-372 3-69 (103)
165 PLN02306 hydroxypyruvate reduc 97.2 0.00092 2E-08 68.7 7.2 75 299-374 161-247 (386)
166 PF02737 3HCDH_N: 3-hydroxyacy 97.2 0.0013 2.8E-08 60.5 7.4 39 305-343 1-39 (180)
167 TIGR00936 ahcY adenosylhomocys 97.1 0.0011 2.4E-08 68.4 7.5 92 299-402 191-285 (406)
168 PLN02712 arogenate dehydrogena 97.1 0.00038 8.2E-09 76.5 4.3 119 299-424 365-486 (667)
169 TIGR01692 HIBADH 3-hydroxyisob 97.1 0.00065 1.4E-08 67.2 5.5 107 308-420 1-113 (288)
170 PRK07688 thiamine/molybdopteri 97.1 0.0008 1.7E-08 68.1 6.3 36 301-336 22-58 (339)
171 PTZ00142 6-phosphogluconate de 97.1 0.0014 3E-08 69.1 8.0 111 305-418 3-122 (470)
172 PRK15059 tartronate semialdehy 97.1 0.00083 1.8E-08 66.6 5.9 109 305-420 2-116 (292)
173 PRK05597 molybdopterin biosynt 97.1 0.00078 1.7E-08 68.7 5.7 71 301-372 26-127 (355)
174 KOG4230 C1-tetrahydrofolate sy 97.1 0.013 2.8E-07 61.5 14.4 189 178-405 41-242 (935)
175 cd01487 E1_ThiF_like E1_ThiF_l 97.1 0.0012 2.5E-08 60.5 6.3 32 305-336 1-33 (174)
176 PRK14618 NAD(P)H-dependent gly 97.1 0.0012 2.5E-08 66.6 6.8 113 304-423 5-136 (328)
177 TIGR02354 thiF_fam2 thiamine b 97.1 0.0011 2.4E-08 62.0 6.2 35 301-335 19-54 (200)
178 PRK12491 pyrroline-5-carboxyla 97.0 0.0012 2.6E-08 64.8 6.5 119 304-430 3-130 (272)
179 KOG1201 Hydroxysteroid 17-beta 97.0 0.0011 2.4E-08 64.7 6.1 74 299-373 34-124 (300)
180 TIGR01470 cysG_Nterm siroheme 97.0 0.0013 2.7E-08 61.9 6.3 74 299-373 5-79 (205)
181 PRK06545 prephenate dehydrogen 97.0 0.00073 1.6E-08 69.0 5.1 117 304-425 1-122 (359)
182 PRK09260 3-hydroxybutyryl-CoA 97.0 0.0011 2.4E-08 65.5 6.1 41 304-344 2-42 (288)
183 PRK05872 short chain dehydroge 97.0 0.0024 5.2E-08 63.1 8.3 75 299-373 5-95 (296)
184 PF10727 Rossmann-like: Rossma 97.0 0.00065 1.4E-08 58.7 3.6 107 303-418 10-122 (127)
185 PRK05866 short chain dehydroge 97.0 0.0018 3.9E-08 64.1 7.3 48 299-346 36-84 (293)
186 TIGR02355 moeB molybdopterin s 97.0 0.0012 2.7E-08 63.4 5.9 35 301-335 22-57 (240)
187 KOG0069 Glyoxylate/hydroxypyru 97.0 0.0014 3E-08 65.5 6.4 120 298-425 157-280 (336)
188 PRK07060 short chain dehydroge 97.0 0.0031 6.6E-08 60.0 8.5 76 299-374 5-88 (245)
189 COG0345 ProC Pyrroline-5-carbo 97.0 0.0017 3.8E-08 63.1 6.7 67 304-373 2-72 (266)
190 PRK05600 thiamine biosynthesis 97.0 0.0013 2.8E-08 67.3 6.1 71 301-372 39-140 (370)
191 PRK08265 short chain dehydroge 96.9 0.003 6.4E-08 61.1 8.1 73 301-373 4-90 (261)
192 PRK06139 short chain dehydroge 96.9 0.0033 7.2E-08 63.4 8.6 75 301-375 5-96 (330)
193 PRK00421 murC UDP-N-acetylmura 96.9 0.0053 1.1E-07 64.8 10.5 95 301-426 5-101 (461)
194 KOG1208 Dehydrogenases with di 96.9 0.0033 7.1E-08 62.9 8.3 79 299-377 31-128 (314)
195 PRK08223 hypothetical protein; 96.9 0.0017 3.8E-08 63.7 6.2 35 301-335 25-60 (287)
196 PRK08293 3-hydroxybutyryl-CoA 96.9 0.0027 5.9E-08 62.7 7.4 40 304-343 4-43 (287)
197 PRK06196 oxidoreductase; Provi 96.9 0.0056 1.2E-07 61.1 9.8 76 299-374 22-110 (315)
198 PF00056 Ldh_1_N: lactate/mala 96.9 0.0052 1.1E-07 54.2 8.3 72 305-378 2-84 (141)
199 PRK01710 murD UDP-N-acetylmura 96.9 0.0053 1.2E-07 64.8 10.0 36 301-336 12-47 (458)
200 PLN03209 translocon at the inn 96.9 0.0023 5E-08 68.5 7.2 72 301-373 78-169 (576)
201 PRK06200 2,3-dihydroxy-2,3-dih 96.9 0.0034 7.3E-08 60.6 7.8 73 301-373 4-90 (263)
202 PRK00094 gpsA NAD(P)H-dependen 96.9 0.0022 4.8E-08 64.1 6.7 90 305-399 3-105 (325)
203 TIGR01915 npdG NADPH-dependent 96.8 0.0023 5E-08 60.6 6.4 91 305-399 2-101 (219)
204 PRK08507 prephenate dehydrogen 96.8 0.0016 3.5E-08 63.9 5.4 111 305-424 2-115 (275)
205 PRK11880 pyrroline-5-carboxyla 96.8 0.0026 5.6E-08 62.0 6.7 67 304-373 3-72 (267)
206 TIGR03325 BphB_TodD cis-2,3-di 96.8 0.0031 6.6E-08 61.0 7.2 73 301-373 3-89 (262)
207 KOG1200 Mitochondrial/plastidi 96.8 0.0029 6.3E-08 58.0 6.5 72 301-373 12-100 (256)
208 PRK07231 fabG 3-ketoacyl-(acyl 96.8 0.0035 7.6E-08 59.7 7.6 47 301-347 3-50 (251)
209 KOG1205 Predicted dehydrogenas 96.8 0.0022 4.8E-08 62.8 6.1 76 300-375 9-103 (282)
210 PRK07530 3-hydroxybutyryl-CoA 96.8 0.0026 5.6E-08 63.0 6.7 40 304-343 5-44 (292)
211 PRK05690 molybdopterin biosynt 96.8 0.0022 4.9E-08 61.9 6.1 35 301-335 30-65 (245)
212 COG0686 Ald Alanine dehydrogen 96.8 0.0026 5.7E-08 62.2 6.4 98 301-401 166-270 (371)
213 PRK11790 D-3-phosphoglycerate 96.8 0.0025 5.4E-08 66.2 6.8 67 299-373 147-213 (409)
214 COG0569 TrkA K+ transport syst 96.8 0.0031 6.8E-08 60.1 6.9 70 304-373 1-76 (225)
215 PRK06057 short chain dehydroge 96.8 0.0036 7.7E-08 60.2 7.4 73 301-373 5-89 (255)
216 TIGR00465 ilvC ketol-acid redu 96.8 0.0027 5.9E-08 63.5 6.7 69 301-374 1-70 (314)
217 PRK06130 3-hydroxybutyryl-CoA 96.8 0.0032 7E-08 62.8 7.2 41 304-344 5-45 (311)
218 KOG3007 Mu-crystallin [Amino a 96.8 0.0067 1.5E-07 58.1 8.7 112 304-423 139-262 (333)
219 cd00757 ThiF_MoeB_HesA_family 96.8 0.0022 4.7E-08 61.2 5.5 71 301-372 19-120 (228)
220 PRK15116 sulfur acceptor prote 96.7 0.0044 9.6E-08 60.5 7.3 35 301-335 28-63 (268)
221 PRK08818 prephenate dehydrogen 96.7 0.00094 2E-08 68.2 2.7 105 303-425 4-112 (370)
222 PRK06505 enoyl-(acyl carrier p 96.7 0.0062 1.3E-07 59.5 8.3 74 301-374 5-96 (271)
223 PRK04308 murD UDP-N-acetylmura 96.7 0.011 2.3E-07 62.1 10.4 37 301-337 3-39 (445)
224 COG0771 MurD UDP-N-acetylmuram 96.7 0.0075 1.6E-07 62.9 8.9 38 301-338 5-42 (448)
225 PRK07680 late competence prote 96.7 0.0032 6.9E-08 61.7 5.9 117 305-429 2-126 (273)
226 cd00755 YgdL_like Family of ac 96.6 0.0035 7.7E-08 59.9 6.0 35 301-335 9-44 (231)
227 COG1648 CysG Siroheme synthase 96.6 0.0057 1.2E-07 57.6 7.2 75 298-373 7-82 (210)
228 KOG1370 S-adenosylhomocysteine 96.6 0.0023 5E-08 62.3 4.5 69 299-372 210-278 (434)
229 PRK11199 tyrA bifunctional cho 96.6 0.0013 2.8E-08 67.6 3.0 89 302-412 97-186 (374)
230 PRK06129 3-hydroxyacyl-CoA deh 96.6 0.006 1.3E-07 60.9 7.7 39 304-342 3-41 (308)
231 KOG0172 Lysine-ketoglutarate r 96.6 0.0009 2E-08 67.1 1.8 135 303-443 2-162 (445)
232 PRK07066 3-hydroxybutyryl-CoA 96.6 0.0052 1.1E-07 61.7 7.2 39 304-342 8-46 (321)
233 PLN02688 pyrroline-5-carboxyla 96.6 0.004 8.8E-08 60.6 6.4 65 305-373 2-71 (266)
234 PRK08862 short chain dehydroge 96.6 0.005 1.1E-07 58.6 6.8 46 301-346 3-49 (227)
235 PRK06500 short chain dehydroge 96.6 0.008 1.7E-07 57.2 8.1 73 301-373 4-90 (249)
236 PRK06079 enoyl-(acyl carrier p 96.6 0.0056 1.2E-07 59.0 7.0 45 301-346 5-52 (252)
237 PRK06035 3-hydroxyacyl-CoA deh 96.6 0.0063 1.4E-07 60.2 7.5 39 304-342 4-42 (291)
238 PRK06522 2-dehydropantoate 2-r 96.6 0.007 1.5E-07 59.8 7.9 66 305-373 2-76 (304)
239 PRK07531 bifunctional 3-hydrox 96.6 0.0055 1.2E-07 65.3 7.4 40 304-343 5-44 (495)
240 PRK07819 3-hydroxybutyryl-CoA 96.5 0.006 1.3E-07 60.3 7.1 38 304-341 6-43 (286)
241 PRK08339 short chain dehydroge 96.5 0.0062 1.4E-07 59.1 7.2 47 300-346 5-52 (263)
242 PRK00066 ldh L-lactate dehydro 96.5 0.0072 1.6E-07 60.6 7.7 74 302-377 5-87 (315)
243 PRK08415 enoyl-(acyl carrier p 96.5 0.01 2.3E-07 58.0 8.6 73 301-373 3-93 (274)
244 PF01408 GFO_IDH_MocA: Oxidore 96.5 0.0048 1E-07 52.1 5.4 105 305-419 2-117 (120)
245 TIGR03026 NDP-sugDHase nucleot 96.5 0.012 2.7E-07 61.1 9.4 100 305-405 2-126 (411)
246 PRK14619 NAD(P)H-dependent gly 96.5 0.0033 7.2E-08 62.7 5.0 34 303-336 4-37 (308)
247 PRK05867 short chain dehydroge 96.5 0.0066 1.4E-07 58.2 6.9 47 300-346 6-53 (253)
248 PRK07523 gluconate 5-dehydroge 96.5 0.007 1.5E-07 58.1 7.1 48 300-347 7-55 (255)
249 PRK07984 enoyl-(acyl carrier p 96.5 0.01 2.2E-07 57.7 8.3 73 301-373 4-94 (262)
250 PRK07533 enoyl-(acyl carrier p 96.5 0.013 2.9E-07 56.5 8.9 75 299-373 6-98 (258)
251 KOG1014 17 beta-hydroxysteroid 96.5 0.0055 1.2E-07 60.2 6.0 46 303-348 49-95 (312)
252 COG1064 AdhP Zn-dependent alco 96.5 0.0087 1.9E-07 60.1 7.6 69 302-372 166-238 (339)
253 PRK05854 short chain dehydroge 96.5 0.0081 1.8E-07 60.0 7.5 48 299-346 10-58 (313)
254 PLN02858 fructose-bisphosphate 96.5 0.0046 1E-07 73.2 6.5 107 303-415 4-116 (1378)
255 PRK08159 enoyl-(acyl carrier p 96.4 0.011 2.3E-07 57.9 8.1 74 300-373 7-98 (272)
256 PRK04690 murD UDP-N-acetylmura 96.4 0.016 3.4E-07 61.4 10.0 35 301-335 6-40 (468)
257 PRK07424 bifunctional sterol d 96.4 0.0064 1.4E-07 63.0 6.8 74 300-374 175-256 (406)
258 COG0673 MviM Predicted dehydro 96.4 0.015 3.2E-07 58.5 9.3 116 304-429 4-132 (342)
259 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0028 6.1E-08 57.5 3.6 96 301-401 18-141 (168)
260 PRK05993 short chain dehydroge 96.4 0.0058 1.3E-07 59.7 6.1 72 303-375 4-88 (277)
261 KOG0725 Reductases with broad 96.4 0.0086 1.9E-07 58.7 7.2 49 299-347 4-53 (270)
262 PRK08594 enoyl-(acyl carrier p 96.4 0.0092 2E-07 57.7 7.3 73 301-373 5-97 (257)
263 PRK12742 oxidoreductase; Provi 96.4 0.013 2.7E-07 55.4 8.1 73 301-373 4-85 (237)
264 PRK01390 murD UDP-N-acetylmura 96.4 0.023 5E-07 59.9 10.9 97 301-425 7-103 (460)
265 PRK06182 short chain dehydroge 96.4 0.0059 1.3E-07 59.4 5.8 71 303-374 3-85 (273)
266 PRK05717 oxidoreductase; Valid 96.3 0.01 2.2E-07 57.0 7.3 77 298-374 5-95 (255)
267 PRK07889 enoyl-(acyl carrier p 96.3 0.011 2.5E-07 57.0 7.7 74 301-374 5-96 (256)
268 PRK06949 short chain dehydroge 96.3 0.011 2.4E-07 56.6 7.5 48 299-346 5-53 (258)
269 PRK08277 D-mannonate oxidoredu 96.3 0.0097 2.1E-07 57.9 7.1 76 299-374 6-98 (278)
270 PF00208 ELFV_dehydrog: Glutam 96.3 0.049 1.1E-06 52.6 11.8 134 274-423 11-171 (244)
271 COG0334 GdhA Glutamate dehydro 96.3 0.031 6.8E-07 57.1 10.7 131 299-441 203-363 (411)
272 PLN02858 fructose-bisphosphate 96.3 0.006 1.3E-07 72.3 6.4 109 304-418 325-441 (1378)
273 PF13460 NAD_binding_10: NADH( 96.3 0.0034 7.3E-08 57.1 3.4 64 306-373 1-70 (183)
274 PRK06180 short chain dehydroge 96.3 0.018 4E-07 56.1 8.8 72 303-374 4-89 (277)
275 PRK12367 short chain dehydroge 96.3 0.0074 1.6E-07 58.2 5.8 74 300-374 11-90 (245)
276 PRK03803 murD UDP-N-acetylmura 96.3 0.024 5.1E-07 59.6 10.1 34 303-336 6-39 (448)
277 cd05292 LDH_2 A subgroup of L- 96.3 0.016 3.5E-07 57.8 8.4 72 305-378 2-82 (308)
278 PRK02006 murD UDP-N-acetylmura 96.3 0.023 5.1E-07 60.6 10.1 36 301-336 5-40 (498)
279 COG0281 SfcA Malic enzyme [Ene 96.2 0.12 2.5E-06 53.1 14.3 190 178-414 97-314 (432)
280 PRK01368 murD UDP-N-acetylmura 96.2 0.023 5E-07 59.9 9.8 35 302-337 5-39 (454)
281 PRK07878 molybdopterin biosynt 96.2 0.0071 1.5E-07 62.5 5.7 35 301-335 40-75 (392)
282 PLN02545 3-hydroxybutyryl-CoA 96.2 0.014 3E-07 57.8 7.6 38 304-341 5-42 (295)
283 PRK12936 3-ketoacyl-(acyl-carr 96.2 0.021 4.5E-07 54.1 8.5 74 301-374 4-91 (245)
284 PLN02477 glutamate dehydrogena 96.2 0.071 1.5E-06 55.2 12.8 130 272-422 184-334 (410)
285 PRK06603 enoyl-(acyl carrier p 96.2 0.018 4E-07 55.7 8.2 73 301-373 6-96 (260)
286 PRK07411 hypothetical protein; 96.2 0.0071 1.5E-07 62.5 5.5 35 301-335 36-71 (390)
287 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.2 0.013 2.8E-07 62.6 7.5 40 303-342 5-44 (503)
288 PRK07825 short chain dehydroge 96.2 0.013 2.9E-07 56.8 7.1 73 301-374 3-89 (273)
289 PF02254 TrkA_N: TrkA-N domain 96.2 0.014 3.1E-07 48.9 6.4 67 306-372 1-71 (116)
290 cd08230 glucose_DH Glucose deh 96.2 0.018 4E-07 58.3 8.4 71 302-373 172-248 (355)
291 TIGR01832 kduD 2-deoxy-D-gluco 96.2 0.022 4.7E-07 54.3 8.4 36 301-336 3-39 (248)
292 PRK08085 gluconate 5-dehydroge 96.2 0.013 2.9E-07 56.1 6.9 48 300-347 6-54 (254)
293 PRK09291 short chain dehydroge 96.1 0.016 3.5E-07 55.5 7.5 71 303-373 2-83 (257)
294 PRK09186 flagellin modificatio 96.1 0.014 3.1E-07 55.8 6.8 45 302-346 3-48 (256)
295 PRK08703 short chain dehydroge 96.1 0.015 3.2E-07 55.2 6.9 46 301-346 4-50 (239)
296 PRK08690 enoyl-(acyl carrier p 96.1 0.016 3.4E-07 56.2 7.2 74 301-374 4-95 (261)
297 KOG1207 Diacetyl reductase/L-x 96.1 0.014 2.9E-07 52.8 6.0 49 300-348 4-53 (245)
298 PLN02780 ketoreductase/ oxidor 96.1 0.013 2.7E-07 58.9 6.6 45 302-346 52-97 (320)
299 PRK11064 wecC UDP-N-acetyl-D-m 96.1 0.028 6.2E-07 58.5 9.5 105 304-408 4-129 (415)
300 PRK07063 short chain dehydroge 96.1 0.015 3.3E-07 55.9 7.0 47 301-347 5-52 (260)
301 PRK07774 short chain dehydroge 96.1 0.016 3.5E-07 55.2 7.1 46 301-346 4-50 (250)
302 PRK06125 short chain dehydroge 96.1 0.016 3.4E-07 55.8 7.1 73 301-373 5-91 (259)
303 PRK02705 murD UDP-N-acetylmura 96.1 0.038 8.2E-07 58.2 10.5 32 305-336 2-33 (459)
304 COG0499 SAM1 S-adenosylhomocys 96.1 0.014 3E-07 58.3 6.5 70 298-372 204-273 (420)
305 PRK07478 short chain dehydroge 96.1 0.016 3.5E-07 55.5 7.0 46 301-346 4-50 (254)
306 PRK09880 L-idonate 5-dehydroge 96.0 0.022 4.8E-07 57.4 8.3 93 302-400 169-267 (343)
307 PRK09414 glutamate dehydrogena 96.0 0.083 1.8E-06 55.3 12.5 130 272-422 210-367 (445)
308 PRK07370 enoyl-(acyl carrier p 96.0 0.02 4.3E-07 55.4 7.5 35 301-335 4-41 (258)
309 COG3967 DltE Short-chain dehyd 96.0 0.019 4.1E-07 53.3 6.8 73 301-373 3-88 (245)
310 PRK12481 2-deoxy-D-gluconate 3 96.0 0.022 4.8E-07 54.7 7.8 37 300-336 5-42 (251)
311 PTZ00082 L-lactate dehydrogena 96.0 0.019 4.1E-07 57.8 7.5 75 302-378 5-89 (321)
312 cd05313 NAD_bind_2_Glu_DH NAD( 96.0 0.11 2.4E-06 50.3 12.4 130 272-422 16-177 (254)
313 PRK07062 short chain dehydroge 96.0 0.017 3.6E-07 55.8 7.0 47 300-346 5-52 (265)
314 PRK06484 short chain dehydroge 96.0 0.016 3.4E-07 62.0 7.3 73 301-373 3-89 (520)
315 PRK06172 short chain dehydroge 96.0 0.017 3.8E-07 55.2 7.0 47 300-346 4-51 (253)
316 PRK06997 enoyl-(acyl carrier p 96.0 0.021 4.6E-07 55.3 7.6 73 301-373 4-94 (260)
317 PLN00141 Tic62-NAD(P)-related 96.0 0.011 2.3E-07 57.0 5.4 74 300-374 14-96 (251)
318 cd01483 E1_enzyme_family Super 96.0 0.0052 1.1E-07 54.0 3.0 40 305-344 1-41 (143)
319 PTZ00079 NADP-specific glutama 96.0 0.16 3.4E-06 53.1 14.2 129 272-420 215-374 (454)
320 PRK06720 hypothetical protein; 96.0 0.021 4.6E-07 51.8 7.0 47 300-346 13-60 (169)
321 PRK06484 short chain dehydroge 96.0 0.019 4.1E-07 61.3 7.7 74 300-373 266-353 (520)
322 PRK07232 bifunctional malic en 96.0 0.051 1.1E-06 60.3 11.0 193 195-422 95-308 (752)
323 PRK06124 gluconate 5-dehydroge 96.0 0.023 4.9E-07 54.5 7.6 48 299-346 7-55 (256)
324 PRK12921 2-dehydropantoate 2-r 95.9 0.016 3.6E-07 57.3 6.7 67 305-374 2-79 (305)
325 PRK10538 malonic semialdehyde 95.9 0.029 6.2E-07 53.7 8.1 70 305-374 2-85 (248)
326 PRK09242 tropinone reductase; 95.9 0.02 4.4E-07 54.9 7.1 48 299-346 5-53 (257)
327 PRK09496 trkA potassium transp 95.9 0.02 4.3E-07 60.1 7.6 69 305-373 2-75 (453)
328 PRK14620 NAD(P)H-dependent gly 95.9 0.016 3.6E-07 58.2 6.6 70 305-374 2-82 (326)
329 PRK06197 short chain dehydroge 95.9 0.018 3.9E-07 57.0 6.8 47 300-346 13-60 (306)
330 PRK08324 short chain dehydroge 95.9 0.019 4.1E-07 63.7 7.5 75 300-374 419-509 (681)
331 TIGR03589 PseB UDP-N-acetylglu 95.9 0.021 4.5E-07 57.3 7.1 72 301-373 2-84 (324)
332 PRK07035 short chain dehydroge 95.9 0.025 5.3E-07 54.1 7.4 48 299-346 4-52 (252)
333 PRK08268 3-hydroxy-acyl-CoA de 95.9 0.02 4.4E-07 61.1 7.3 39 304-342 8-46 (507)
334 PRK05653 fabG 3-ketoacyl-(acyl 95.8 0.016 3.4E-07 54.8 5.8 46 301-346 3-49 (246)
335 PF00106 adh_short: short chai 95.8 0.025 5.4E-07 50.3 6.8 44 304-347 1-48 (167)
336 PRK07890 short chain dehydroge 95.8 0.022 4.8E-07 54.5 6.8 47 301-347 3-50 (258)
337 PRK07067 sorbitol dehydrogenas 95.8 0.022 4.8E-07 54.7 6.8 73 301-373 4-90 (257)
338 PRK07097 gluconate 5-dehydroge 95.8 0.025 5.4E-07 54.7 7.2 48 299-346 6-54 (265)
339 COG5322 Predicted dehydrogenas 95.8 0.045 9.7E-07 52.7 8.5 113 298-421 162-281 (351)
340 PRK08589 short chain dehydroge 95.8 0.023 5E-07 55.3 7.0 45 301-346 4-49 (272)
341 PRK14806 bifunctional cyclohex 95.8 0.022 4.8E-07 63.7 7.7 114 304-425 4-125 (735)
342 PRK07453 protochlorophyllide o 95.8 0.023 5.1E-07 56.7 7.1 47 301-347 4-51 (322)
343 TIGR01082 murC UDP-N-acetylmur 95.8 0.048 1E-06 57.4 9.7 89 306-425 2-92 (448)
344 PRK07831 short chain dehydroge 95.8 0.023 4.9E-07 54.8 6.8 47 300-346 14-62 (262)
345 PRK05562 precorrin-2 dehydroge 95.8 0.023 5E-07 53.9 6.6 74 298-372 20-94 (223)
346 PRK14030 glutamate dehydrogena 95.8 0.096 2.1E-06 54.7 11.6 128 273-420 207-365 (445)
347 PRK13394 3-hydroxybutyrate deh 95.8 0.025 5.5E-07 54.2 7.0 46 301-346 5-51 (262)
348 PRK08217 fabG 3-ketoacyl-(acyl 95.8 0.026 5.6E-07 53.6 7.0 46 301-346 3-49 (253)
349 PRK06194 hypothetical protein; 95.7 0.026 5.6E-07 55.1 7.0 46 301-346 4-50 (287)
350 TIGR01761 thiaz-red thiazoliny 95.7 0.031 6.8E-07 56.6 7.6 110 303-421 3-121 (343)
351 KOG0024 Sorbitol dehydrogenase 95.7 0.025 5.5E-07 55.9 6.6 73 302-375 169-254 (354)
352 PRK14031 glutamate dehydrogena 95.7 0.085 1.8E-06 55.1 10.8 53 272-333 206-258 (444)
353 PRK07326 short chain dehydroge 95.7 0.028 6E-07 53.1 6.8 47 301-347 4-51 (237)
354 cd00300 LDH_like L-lactate deh 95.7 0.028 6E-07 56.0 7.1 68 306-375 1-78 (300)
355 PRK07814 short chain dehydroge 95.7 0.031 6.8E-07 54.0 7.3 47 300-346 7-54 (263)
356 PRK06483 dihydromonapterin red 95.7 0.028 6E-07 53.2 6.8 71 303-373 2-84 (236)
357 PRK05876 short chain dehydroge 95.7 0.028 6E-07 55.0 6.9 46 301-346 4-50 (275)
358 PRK09496 trkA potassium transp 95.7 0.037 8.1E-07 58.0 8.4 73 301-373 229-307 (453)
359 PRK07576 short chain dehydroge 95.7 0.03 6.5E-07 54.2 7.1 47 300-346 6-53 (264)
360 PRK06138 short chain dehydroge 95.7 0.028 6.1E-07 53.5 6.8 46 301-346 3-49 (252)
361 PRK04663 murD UDP-N-acetylmura 95.6 0.051 1.1E-06 57.0 9.2 36 301-336 4-42 (438)
362 PRK12939 short chain dehydroge 95.6 0.032 7E-07 53.0 7.1 46 301-346 5-51 (250)
363 PRK09072 short chain dehydroge 95.6 0.032 6.9E-07 53.8 7.1 46 301-346 3-49 (263)
364 cd05293 LDH_1 A subgroup of L- 95.6 0.033 7.1E-07 55.8 7.3 72 304-377 4-85 (312)
365 PRK08945 putative oxoacyl-(acy 95.6 0.029 6.4E-07 53.5 6.8 47 300-346 9-56 (247)
366 COG1179 Dinucleotide-utilizing 95.6 0.021 4.5E-07 54.3 5.4 34 301-334 28-62 (263)
367 PLN02253 xanthoxin dehydrogena 95.6 0.031 6.7E-07 54.4 7.0 48 300-347 15-63 (280)
368 PRK05875 short chain dehydroge 95.6 0.032 6.9E-07 54.2 7.1 47 300-346 4-51 (276)
369 TIGR02632 RhaD_aldol-ADH rhamn 95.6 0.036 7.8E-07 61.4 8.2 48 299-346 410-458 (676)
370 PF01118 Semialdhyde_dh: Semia 95.6 0.0029 6.3E-08 54.1 -0.3 92 305-401 1-99 (121)
371 PRK05693 short chain dehydroge 95.6 0.025 5.5E-07 54.9 6.2 70 304-374 2-83 (274)
372 PRK12829 short chain dehydroge 95.6 0.032 6.9E-07 53.5 6.8 48 300-347 8-56 (264)
373 PRK08643 acetoin reductase; Va 95.5 0.031 6.8E-07 53.5 6.7 45 303-347 2-47 (256)
374 PRK07109 short chain dehydroge 95.5 0.034 7.3E-07 56.1 7.2 75 300-374 5-96 (334)
375 PRK07454 short chain dehydroge 95.5 0.035 7.5E-07 52.7 6.8 45 302-346 5-50 (241)
376 PRK15057 UDP-glucose 6-dehydro 95.5 0.069 1.5E-06 55.1 9.4 99 305-405 2-123 (388)
377 PRK06482 short chain dehydroge 95.5 0.051 1.1E-06 52.7 8.1 71 304-374 3-87 (276)
378 TIGR01087 murD UDP-N-acetylmur 95.5 0.049 1.1E-06 56.9 8.5 32 305-336 1-32 (433)
379 PRK07677 short chain dehydroge 95.5 0.033 7.2E-07 53.3 6.7 44 303-346 1-45 (252)
380 PRK06935 2-deoxy-D-gluconate 3 95.5 0.033 7.1E-07 53.6 6.6 47 299-346 11-58 (258)
381 PRK03806 murD UDP-N-acetylmura 95.5 0.08 1.7E-06 55.4 10.0 36 301-336 4-39 (438)
382 PRK14851 hypothetical protein; 95.5 0.023 4.9E-07 62.7 6.0 35 301-335 41-76 (679)
383 PLN02989 cinnamyl-alcohol dehy 95.5 0.029 6.3E-07 55.9 6.4 70 303-373 5-87 (325)
384 PRK06940 short chain dehydroge 95.5 0.032 6.9E-07 54.5 6.6 43 303-346 2-44 (275)
385 PRK09287 6-phosphogluconate de 95.5 0.019 4.1E-07 60.4 5.2 101 314-418 1-110 (459)
386 PRK08263 short chain dehydroge 95.4 0.056 1.2E-06 52.5 8.2 72 303-374 3-88 (275)
387 PRK07666 fabG 3-ketoacyl-(acyl 95.4 0.042 9.1E-07 52.0 7.1 46 301-346 5-51 (239)
388 PRK08303 short chain dehydroge 95.4 0.032 7E-07 55.5 6.5 37 300-336 5-42 (305)
389 PRK05808 3-hydroxybutyryl-CoA 95.4 0.032 6.9E-07 54.9 6.4 37 304-340 4-40 (282)
390 TIGR03206 benzo_BadH 2-hydroxy 95.4 0.039 8.5E-07 52.4 6.8 45 302-346 2-47 (250)
391 PTZ00117 malate dehydrogenase; 95.4 0.039 8.4E-07 55.5 7.0 74 302-377 4-87 (319)
392 PRK12828 short chain dehydroge 95.4 0.038 8.3E-07 51.9 6.7 46 301-346 5-51 (239)
393 PRK05884 short chain dehydroge 95.4 0.037 8E-07 52.3 6.5 69 305-373 2-79 (223)
394 PRK07201 short chain dehydroge 95.4 0.036 7.7E-07 61.0 7.3 47 300-346 368-415 (657)
395 PRK08177 short chain dehydroge 95.4 0.059 1.3E-06 50.7 7.9 71 304-374 2-82 (225)
396 PRK06113 7-alpha-hydroxysteroi 95.4 0.05 1.1E-06 52.2 7.5 48 299-346 7-55 (255)
397 PRK08251 short chain dehydroge 95.4 0.042 9.1E-07 52.3 6.9 44 303-346 2-46 (248)
398 PRK08416 7-alpha-hydroxysteroi 95.4 0.039 8.5E-07 53.2 6.8 47 300-346 5-53 (260)
399 PLN02730 enoyl-[acyl-carrier-p 95.3 0.03 6.5E-07 55.8 5.9 45 299-344 5-52 (303)
400 PRK06101 short chain dehydroge 95.3 0.039 8.4E-07 52.5 6.5 42 304-345 2-44 (240)
401 COG0240 GpsA Glycerol-3-phosph 95.3 0.038 8.1E-07 55.2 6.5 70 304-374 2-82 (329)
402 PRK12862 malic enzyme; Reviewe 95.3 0.15 3.3E-06 57.0 11.8 184 200-422 109-316 (763)
403 PRK06928 pyrroline-5-carboxyla 95.3 0.034 7.4E-07 54.6 6.2 119 305-431 3-131 (277)
404 PRK08267 short chain dehydroge 95.3 0.04 8.7E-07 53.0 6.6 44 304-347 2-46 (260)
405 PRK08213 gluconate 5-dehydroge 95.3 0.047 1E-06 52.4 7.1 47 300-346 9-56 (259)
406 PRK07074 short chain dehydroge 95.3 0.046 9.9E-07 52.4 6.8 44 303-346 2-46 (257)
407 PRK05786 fabG 3-ketoacyl-(acyl 95.3 0.05 1.1E-06 51.4 7.0 46 301-346 3-49 (238)
408 PRK07024 short chain dehydroge 95.3 0.044 9.5E-07 52.7 6.6 44 303-346 2-46 (257)
409 PRK05708 2-dehydropantoate 2-r 95.2 0.055 1.2E-06 54.0 7.5 42 304-345 3-44 (305)
410 PRK12429 3-hydroxybutyrate deh 95.2 0.051 1.1E-06 51.8 7.0 45 302-346 3-48 (258)
411 PRK05579 bifunctional phosphop 95.2 0.091 2E-06 54.4 9.2 90 269-374 165-278 (399)
412 PRK14573 bifunctional D-alanyl 95.2 0.095 2.1E-06 59.4 10.2 92 304-426 5-98 (809)
413 PLN02896 cinnamyl-alcohol dehy 95.2 0.057 1.2E-06 54.7 7.6 73 300-373 7-89 (353)
414 cd00762 NAD_bind_malic_enz NAD 95.2 0.13 2.7E-06 49.8 9.4 104 299-414 21-157 (254)
415 PF00899 ThiF: ThiF family; I 95.2 0.023 5E-07 49.4 4.1 37 303-339 2-39 (135)
416 cd05290 LDH_3 A subgroup of L- 95.2 0.05 1.1E-06 54.4 6.9 71 305-377 1-82 (307)
417 PRK08628 short chain dehydroge 95.2 0.045 9.7E-07 52.5 6.5 46 299-345 3-49 (258)
418 PF02558 ApbA: Ketopantoate re 95.2 0.042 9.2E-07 48.4 5.8 66 306-373 1-77 (151)
419 cd01488 Uba3_RUB Ubiquitin act 95.2 0.047 1E-06 54.0 6.6 30 305-334 1-31 (291)
420 PRK08017 oxidoreductase; Provi 95.1 0.046 1E-06 52.2 6.3 40 304-343 3-43 (256)
421 PRK06914 short chain dehydroge 95.1 0.056 1.2E-06 52.5 7.0 43 303-345 3-46 (280)
422 TIGR01289 LPOR light-dependent 95.1 0.055 1.2E-06 54.0 7.0 45 303-347 3-49 (314)
423 PRK06179 short chain dehydroge 95.1 0.015 3.3E-07 56.3 2.8 39 303-341 4-43 (270)
424 PRK12826 3-ketoacyl-(acyl-carr 95.1 0.057 1.2E-06 51.2 6.8 46 301-346 4-50 (251)
425 cd01484 E1-2_like Ubiquitin ac 95.0 0.047 1E-06 52.4 6.0 32 305-336 1-33 (234)
426 PRK08340 glucose-1-dehydrogena 95.0 0.055 1.2E-06 52.1 6.6 42 305-346 2-44 (259)
427 PRK07791 short chain dehydroge 95.0 0.053 1.2E-06 53.3 6.6 46 301-346 4-59 (286)
428 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.074 1.6E-06 51.2 7.3 69 302-371 10-114 (244)
429 PRK05565 fabG 3-ketoacyl-(acyl 95.0 0.061 1.3E-06 50.9 6.8 46 301-346 3-50 (247)
430 cd00650 LDH_MDH_like NAD-depen 95.0 0.046 1E-06 53.2 5.9 72 306-378 1-85 (263)
431 PRK07792 fabG 3-ketoacyl-(acyl 95.0 0.07 1.5E-06 53.0 7.3 48 299-346 8-57 (306)
432 PRK07102 short chain dehydroge 95.0 0.062 1.3E-06 51.1 6.7 43 304-346 2-45 (243)
433 PRK06841 short chain dehydroge 94.9 0.065 1.4E-06 51.2 6.8 40 300-339 12-52 (255)
434 PRK05225 ketol-acid reductoiso 94.9 0.019 4.1E-07 59.6 3.0 71 300-374 33-108 (487)
435 PRK12823 benD 1,6-dihydroxycyc 94.9 0.066 1.4E-06 51.4 6.7 46 300-346 5-51 (260)
436 PRK13303 L-aspartate dehydroge 94.8 0.034 7.4E-07 54.3 4.6 106 305-417 3-115 (265)
437 PRK12439 NAD(P)H-dependent gly 94.8 0.052 1.1E-06 55.1 6.0 69 304-374 8-88 (341)
438 PRK08261 fabG 3-ketoacyl-(acyl 94.8 0.083 1.8E-06 55.4 7.8 74 300-373 207-294 (450)
439 PRK05599 hypothetical protein; 94.8 0.063 1.4E-06 51.4 6.4 42 304-346 1-43 (246)
440 CHL00194 ycf39 Ycf39; Provisio 94.8 0.053 1.1E-06 54.1 6.0 66 305-372 2-73 (317)
441 cd01491 Ube1_repeat1 Ubiquitin 94.8 0.095 2.1E-06 51.7 7.6 42 301-342 17-59 (286)
442 COG0059 IlvC Ketol-acid reduct 94.8 0.049 1.1E-06 53.4 5.4 72 300-375 15-86 (338)
443 PRK12384 sorbitol-6-phosphate 94.8 0.074 1.6E-06 51.0 6.8 44 303-346 2-46 (259)
444 PRK06463 fabG 3-ketoacyl-(acyl 94.8 0.083 1.8E-06 50.6 7.1 72 301-373 5-89 (255)
445 PRK07806 short chain dehydroge 94.8 0.074 1.6E-06 50.6 6.7 46 301-346 4-51 (248)
446 PLN02986 cinnamyl-alcohol dehy 94.8 0.065 1.4E-06 53.4 6.5 41 302-342 4-45 (322)
447 PRK06114 short chain dehydroge 94.7 0.089 1.9E-06 50.4 7.2 47 300-346 5-53 (254)
448 PRK06181 short chain dehydroge 94.7 0.078 1.7E-06 51.0 6.8 43 304-346 2-45 (263)
449 PRK06223 malate dehydrogenase; 94.7 0.087 1.9E-06 52.5 7.2 72 304-377 3-84 (307)
450 PRK08229 2-dehydropantoate 2-r 94.7 0.077 1.7E-06 53.5 6.9 91 304-402 3-110 (341)
451 PRK06198 short chain dehydroge 94.7 0.079 1.7E-06 50.8 6.7 46 301-346 4-51 (260)
452 PLN02602 lactate dehydrogenase 94.7 0.1 2.2E-06 53.1 7.6 72 304-377 38-119 (350)
453 TIGR03366 HpnZ_proposed putati 94.7 0.12 2.7E-06 50.5 8.1 92 302-399 120-218 (280)
454 TIGR02822 adh_fam_2 zinc-bindi 94.7 0.14 3E-06 51.4 8.7 69 302-374 165-234 (329)
455 PRK06249 2-dehydropantoate 2-r 94.6 0.073 1.6E-06 53.2 6.5 35 303-337 5-39 (313)
456 PRK00436 argC N-acetyl-gamma-g 94.6 0.034 7.3E-07 56.5 4.1 91 304-399 3-99 (343)
457 TIGR01963 PHB_DH 3-hydroxybuty 94.6 0.082 1.8E-06 50.3 6.5 44 303-346 1-45 (255)
458 PRK10637 cysG siroheme synthas 94.6 0.066 1.4E-06 56.5 6.3 74 298-372 7-81 (457)
459 PTZ00345 glycerol-3-phosphate 94.6 0.069 1.5E-06 54.6 6.2 71 303-374 11-104 (365)
460 PRK07904 short chain dehydroge 94.6 0.076 1.7E-06 51.1 6.3 45 302-346 7-54 (253)
461 PRK06523 short chain dehydroge 94.5 0.069 1.5E-06 51.2 5.8 39 300-338 6-45 (260)
462 PRK00683 murD UDP-N-acetylmura 94.5 0.18 3.9E-06 52.5 9.3 36 303-338 3-38 (418)
463 PLN02586 probable cinnamyl alc 94.5 0.1 2.2E-06 53.2 7.3 70 302-372 183-256 (360)
464 TIGR03376 glycerol3P_DH glycer 94.5 0.075 1.6E-06 53.9 6.1 69 305-374 1-93 (342)
465 TIGR02622 CDP_4_6_dhtase CDP-g 94.4 0.05 1.1E-06 55.0 4.8 41 302-342 3-44 (349)
466 PLN02214 cinnamoyl-CoA reducta 94.4 0.086 1.9E-06 53.3 6.5 38 301-338 8-46 (342)
467 COG1712 Predicted dinucleotide 94.4 0.1 2.2E-06 49.1 6.3 114 305-426 2-129 (255)
468 PRK08063 enoyl-(acyl carrier p 94.4 0.098 2.1E-06 49.7 6.5 45 302-346 3-49 (250)
469 PRK11730 fadB multifunctional 94.4 0.1 2.2E-06 58.3 7.4 38 304-341 314-351 (715)
470 PRK08264 short chain dehydroge 94.4 0.079 1.7E-06 50.0 5.8 41 301-341 4-46 (238)
471 TIGR02415 23BDH acetoin reduct 94.3 0.11 2.3E-06 49.6 6.7 43 304-346 1-44 (254)
472 PLN02662 cinnamyl-alcohol dehy 94.3 0.087 1.9E-06 52.3 6.3 37 303-339 4-41 (322)
473 cd05297 GH4_alpha_glucosidase_ 94.3 0.058 1.3E-06 56.4 5.1 73 305-378 2-89 (423)
474 PRK08936 glucose-1-dehydrogena 94.3 0.13 2.7E-06 49.6 7.2 47 300-346 4-52 (261)
475 PRK12747 short chain dehydroge 94.3 0.11 2.4E-06 49.6 6.8 45 302-346 3-49 (252)
476 PRK12562 ornithine carbamoyltr 94.3 0.96 2.1E-05 45.7 13.6 163 186-373 57-235 (334)
477 PRK08642 fabG 3-ketoacyl-(acyl 94.3 0.1 2.2E-06 49.6 6.4 47 301-347 3-51 (253)
478 COG1250 FadB 3-hydroxyacyl-CoA 94.2 0.12 2.6E-06 51.4 6.9 38 303-340 3-40 (307)
479 PRK10669 putative cation:proto 94.2 0.095 2.1E-06 56.8 6.7 68 304-372 418-490 (558)
480 PRK05086 malate dehydrogenase; 94.2 0.085 1.8E-06 52.8 5.8 72 304-377 1-83 (312)
481 cd08242 MDR_like Medium chain 94.2 0.21 4.6E-06 49.4 8.7 68 302-372 155-223 (319)
482 PRK05650 short chain dehydroge 94.2 0.11 2.4E-06 50.2 6.5 43 304-346 1-44 (270)
483 PRK07832 short chain dehydroge 94.2 0.12 2.5E-06 50.2 6.7 43 304-346 1-44 (272)
484 cd05188 MDR Medium chain reduc 94.2 0.19 4.1E-06 47.8 8.0 95 301-401 133-234 (271)
485 PRK06924 short chain dehydroge 94.2 0.089 1.9E-06 50.1 5.7 43 304-346 2-46 (251)
486 PRK12746 short chain dehydroge 94.2 0.13 2.8E-06 49.1 6.8 46 301-346 4-51 (254)
487 PRK07775 short chain dehydroge 94.1 0.15 3.2E-06 49.7 7.3 46 301-346 8-54 (274)
488 COG1063 Tdh Threonine dehydrog 94.1 0.17 3.6E-06 51.5 7.9 69 303-372 169-247 (350)
489 COG3268 Uncharacterized conser 94.1 0.081 1.7E-06 52.5 5.2 116 304-423 7-133 (382)
490 PRK05855 short chain dehydroge 94.1 0.12 2.5E-06 55.6 7.1 76 299-374 311-403 (582)
491 TIGR02437 FadB fatty oxidation 94.1 0.13 2.8E-06 57.4 7.5 39 303-341 313-351 (714)
492 PRK06300 enoyl-(acyl carrier p 94.1 0.096 2.1E-06 52.1 5.9 35 300-334 5-42 (299)
493 cd08237 ribitol-5-phosphate_DH 94.1 0.16 3.4E-06 51.3 7.6 67 302-372 163-231 (341)
494 COG0039 Mdh Malate/lactate deh 94.0 0.1 2.2E-06 52.0 5.9 110 304-416 1-134 (313)
495 cd01485 E1-1_like Ubiquitin ac 94.0 0.07 1.5E-06 49.8 4.5 37 301-337 17-54 (198)
496 PRK06398 aldose dehydrogenase; 94.0 0.08 1.7E-06 51.0 5.1 39 300-338 3-42 (258)
497 PLN02650 dihydroflavonol-4-red 94.0 0.1 2.2E-06 52.7 6.1 71 302-373 4-87 (351)
498 cd00958 DhnA Class I fructose- 94.0 0.78 1.7E-05 43.7 11.9 98 20-121 76-185 (235)
499 KOG0089 Methylenetetrahydrofol 94.0 0.25 5.3E-06 47.7 8.1 186 176-403 43-252 (309)
500 PRK08226 short chain dehydroge 94.0 0.13 2.8E-06 49.4 6.5 37 301-337 4-41 (263)
No 1
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=100.00 E-value=4.5e-112 Score=896.44 Aligned_cols=448 Identities=56% Similarity=0.925 Sum_probs=408.4
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL 80 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~ 80 (454)
|+|||+|+++|||.|++++++|+++|+.+++.+++|||||++.+++..+.+...+..++++|+|||||++||+.++|.++
T Consensus 78 plI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~ 157 (529)
T PLN02520 78 PTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNL 157 (529)
T ss_pred cEEEEeccHHHCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999998866666655666899999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCC--CCCCCCCChH
Q 012866 81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVE 158 (454)
Q Consensus 81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~--~~ApGQ~~~~ 158 (454)
+++|.++||||+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++. ++||||++++
T Consensus 158 ~~~~~~~gaDi~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~ 237 (529)
T PLN02520 158 VARIQATGADIVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIK 237 (529)
T ss_pred HHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHH
Confidence 99999999999999999999999999999887788999999999999999999999999999999874 5999999999
Q ss_pred hhhhhccccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHH
Q 012866 159 SLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAV 238 (454)
Q Consensus 159 ~l~~~~~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v 238 (454)
++++++++.+++++|++|||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++
T Consensus 238 ~l~~~~~~~~~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v 317 (529)
T PLN02520 238 DLLDLYNFRQIGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDA 317 (529)
T ss_pred HHHHHhhhhcccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHH
Q 012866 239 MKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRAL 318 (454)
Q Consensus 239 ~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai 318 (454)
++++|++|+.|+.+||||||++++++|+|+||||||.||+.+|++.+...+.. +..+..+++|+++|+|+||+|+++
T Consensus 318 ~~~lD~~~~~A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~---~~~~~~~~~k~vlIlGaGGagrAi 394 (529)
T PLN02520 318 LKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSS---PASGSPLAGKLFVVIGAGGAGKAL 394 (529)
T ss_pred HHHhccCCHHHHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhcccccc---cccccCCCCCEEEEECCcHHHHHH
Confidence 99999999999999999999986227899999999999999997643210000 001245778999999999999999
Q ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE
Q 012866 319 AFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA 398 (454)
Q Consensus 319 ~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~ 398 (454)
+++|++.|++|+++||+.++++++++.++.....++++.+.....+|+||||||+||.|..+..|++.+++++..+|+|+
T Consensus 395 a~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~ 474 (529)
T PLN02520 395 AYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDA 474 (529)
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEe
Confidence 99999999999999999999999999886544555554331234579999999999998777778888889999999999
Q ss_pred ecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012866 399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451 (454)
Q Consensus 399 ~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~ 451 (454)
+|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.
T Consensus 475 vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~l~ 527 (529)
T PLN02520 475 VYTPKITRLLREAEESGAIIVSGTEMFIRQAYEQFERFTGLPAPKELFREIMS 527 (529)
T ss_pred ccCCCcCHHHHHHHHCCCeEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998764
No 2
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=100.00 E-value=1.2e-97 Score=778.33 Aligned_cols=407 Identities=27% Similarity=0.418 Sum_probs=368.6
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL 80 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~ 80 (454)
||+ |+|+++ ++++++|+++|+.++++|+||||||++.+++.++++... ++++|+|+|||||+. +++.++
T Consensus 53 pil-T~R~~~-----~~~~~~~~~~l~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~ 121 (477)
T PRK09310 53 PIL-TWKKHE-----SCSQAAWIDKMQSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQL 121 (477)
T ss_pred ceE-EeccCc-----cCCHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHH
Confidence 454 999988 468899999999999999999999999988888777544 359999999999942 579999
Q ss_pred HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCC--CCCCCCCChH
Q 012866 81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVE 158 (454)
Q Consensus 81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~--~~ApGQ~~~~ 158 (454)
+++|.++||||+|||+||++.+|+++++++++..+.|+|+||||+.|++||+++++|||++||+++.. ++||||++++
T Consensus 122 ~~~~~~~gaDi~Kia~~a~~~~D~l~ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~ 201 (477)
T PRK09310 122 YNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLE 201 (477)
T ss_pred HHHHHHcCCCEEEEeeCCCCHHHHHHHHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHH
Confidence 99999999999999999999999999999988888899999999999999999999999999999865 4799999999
Q ss_pred hhhhhccccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchH
Q 012866 159 SLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKE 236 (454)
Q Consensus 159 ~l~~~~~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~ 236 (454)
++. .|++.+++++|++|||+|+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||+
T Consensus 202 ~l~-~~~~~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~ 280 (477)
T PRK09310 202 HLL-FYNYANLSAQSPIYGLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKT 280 (477)
T ss_pred HHH-hcchhccCCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHH
Confidence 998 5789999999999999999999999999999999999999999999984 7999999999999999999999999
Q ss_pred HHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHH
Q 012866 237 AVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGR 316 (454)
Q Consensus 237 ~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~ar 316 (454)
+|+++||++|+.|+.+||||||+++ +|+|+||||||.||+.+|++. +..+++++++|+|+||+|+
T Consensus 281 ~v~~~~d~~~~~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~ 345 (477)
T PRK09310 281 AVLDFLDKLDPSVKLCGSCNTLVFR--NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAK 345 (477)
T ss_pred HHHHHhccCCHHHHHhCcceEEEee--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHH
Confidence 9999999999999999999999987 899999999999999998642 2456789999999999999
Q ss_pred HHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866 317 ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF 396 (454)
Q Consensus 317 ai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~ 396 (454)
++++.|.+.|++|+++||+.++++++++.++....+++++.+ ..++|+||||||.||. ++. .+. .+|+
T Consensus 346 aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~--l~~~DiVInatP~g~~-------~~~-~l~--~~v~ 413 (477)
T PRK09310 346 AIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE--LHRIDIIINCLPPSVT-------IPK-AFP--PCVV 413 (477)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc--cCCCCEEEEcCCCCCc-------chh-HHh--hhEE
Confidence 999999999999999999999999999887654445555443 3578999999999972 222 233 3899
Q ss_pred EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHH
Q 012866 397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFM 446 (454)
Q Consensus 397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~ 446 (454)
|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.+.+.+..
T Consensus 414 D~~Y~P~~T~ll~~A~~~G~~~~~G~~Ml~~Qa~~~f~lw~g~~~~~~~~ 463 (477)
T PRK09310 414 DINTLPKHSPYTQYARSQGSSIIYGYEMFAEQALLQFRLWFPTLLFKHLE 463 (477)
T ss_pred eccCCCCCCHHHHHHHHCcCEEECcHHHHHHHHHHHHHHHcCCcccHHHH
Confidence 99999999999999999999999999999999999999999999987743
No 3
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-74 Score=556.15 Aligned_cols=271 Identities=37% Similarity=0.613 Sum_probs=244.3
Q ss_pred cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 246 (454)
Q Consensus 169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 246 (454)
++.+|++|||||+||+||+||.|||++|+++|+|+.|.+++++ +|+.+++.++.+++.|+|||||||+++++|||++|
T Consensus 2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~ 81 (283)
T COG0169 2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS 81 (283)
T ss_pred CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence 5677899999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866 247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 326 (454)
Q Consensus 247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G 326 (454)
+.|+.+||||||+++. +|+|+||||||.||+++|++.. ......+++++|+||||+|||++++|++.|
T Consensus 82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~-----------~~~~~~~~~vlilGAGGAarAv~~aL~~~g 149 (283)
T COG0169 82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFG-----------LPVDVTGKRVLILGAGGAARAVAFALAEAG 149 (283)
T ss_pred HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcC-----------CCcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 9999999999999982 4999999999999999987631 124556899999999999999999999999
Q ss_pred C-eEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec
Q 012866 327 A-RVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY 400 (454)
Q Consensus 327 ~-~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y 400 (454)
+ +|+|+|||.+||++|++.++... ..+.++.. ..++|+||||||+||.+..+..+++.+.|++..+|+|++|
T Consensus 150 ~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY 227 (283)
T COG0169 150 AKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY 227 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence 8 99999999999999999987432 23333332 1258999999999999874445677788999999999999
Q ss_pred CCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866 401 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453 (454)
Q Consensus 401 ~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~~ 453 (454)
+|.+|||+++|+++|+++++|++||++||++||++|||+++|.+.|++++.+.
T Consensus 228 ~P~~TplL~~A~~~G~~~idGl~Mlv~Qaa~aF~lwtg~~p~~~~~~~a~~~~ 280 (283)
T COG0169 228 NPLETPLLREARAQGAKTIDGLGMLVHQAAEAFELWTGVEPPVDVMKEALIEA 280 (283)
T ss_pred CCCCCHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988764
No 4
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-72 Score=548.99 Aligned_cols=265 Identities=31% Similarity=0.432 Sum_probs=235.3
Q ss_pred CccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc-------CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhh
Q 012866 172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244 (454)
Q Consensus 172 ~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~ 244 (454)
++++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||++++++||+
T Consensus 3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~ 82 (283)
T PRK14027 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE 82 (283)
T ss_pred CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence 578999999999999999999999999999999999996 3789999999989999999999999999999999
Q ss_pred cCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH
Q 012866 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS 324 (454)
Q Consensus 245 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~ 324 (454)
+|+.|+.+||||||++++ +|+|+||||||.||+.+|++. ....++|+++|+||||+|||++++|.+
T Consensus 83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~-------------~~~~~~k~vlilGaGGaarAi~~aL~~ 148 (283)
T PRK14027 83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG-------------LPNAKLDSVVQVGAGGVGNAVAYALVT 148 (283)
T ss_pred CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhc-------------CcCcCCCeEEEECCcHHHHHHHHHHHH
Confidence 999999999999999853 899999999999999998642 123568999999999999999999999
Q ss_pred CCC-eEEEEeCCHHHHHHHHHHhcCCc----c---ccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866 325 RGA-RVVIFDIDFERAKSLASDVMGAA----R---PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF 396 (454)
Q Consensus 325 ~G~-~v~i~nRt~~~a~~la~~~~~~~----~---~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~ 396 (454)
+|+ +|+|+||+.+|+++|++.+.... + ++.++.. .+..+|+||||||+||.+. +..|++.+.+.+..+|+
T Consensus 149 ~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~~~divINaTp~Gm~~~-~~~~~~~~~l~~~~~v~ 226 (283)
T PRK14027 149 HGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVG 226 (283)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH-HHhhcCEEEEcCCCCCCCC-CCCCCCHHHcCCCcEEE
Confidence 999 89999999999999998874211 1 1111121 2356899999999999875 34567777888899999
Q ss_pred EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866 397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452 (454)
Q Consensus 397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~ 452 (454)
|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus 227 D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lw~G~~~~~~~~~~~~~~ 282 (283)
T PRK14027 227 DVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS 282 (283)
T ss_pred EcccCCCCCHHHHHHHHCCCEEEccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999997653
No 5
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=100.00 E-value=6.1e-72 Score=548.61 Aligned_cols=266 Identities=31% Similarity=0.523 Sum_probs=236.7
Q ss_pred cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 246 (454)
Q Consensus 169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 246 (454)
++++|++|||||+||+||+||.|||++|+++|+|++|.+++++ +|+++++.++..+|.|+|||||||++|++++|++|
T Consensus 3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~ 82 (288)
T PRK12749 3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT 82 (288)
T ss_pred cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence 4567899999999999999999999999999999999999994 79999999988899999999999999999999999
Q ss_pred HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866 247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 326 (454)
Q Consensus 247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G 326 (454)
+.|+.+||||||+++ +|+|+||||||.||+++|++. +.++++|+++|+||||+|||++++|..+|
T Consensus 83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g 147 (288)
T PRK12749 83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEG 147 (288)
T ss_pred HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999876 899999999999999998642 24577899999999999999999999999
Q ss_pred C-eEEEEeCC---HHHHHHHHHHhcCCc------ccccc---ccccCCCCccEEEECCCCCCCCCCCCCC-CChhcccCC
Q 012866 327 A-RVVIFDID---FERAKSLASDVMGAA------RPFED---ILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDY 392 (454)
Q Consensus 327 ~-~v~i~nRt---~~~a~~la~~~~~~~------~~~~~---l~~~~~~~~divInat~~g~~p~~~~~~-i~~~~l~~~ 392 (454)
+ +|+|+||+ .+++++|+++++... .++++ +.+ ...++|+||||||+||.|..+..+ ++.+.+++.
T Consensus 148 ~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~-~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~ 226 (288)
T PRK12749 148 LKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLVNDISLLHPG 226 (288)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh-hcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCC
Confidence 9 99999999 469999999885321 12221 112 245789999999999998655433 345678889
Q ss_pred cEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866 393 QLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450 (454)
Q Consensus 393 ~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~ 450 (454)
.+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++
T Consensus 227 ~~v~D~vY~P~~T~ll~~A~~~G~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~~ 284 (288)
T PRK12749 227 LLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284 (288)
T ss_pred CEEEEecCCCccCHHHHHHHHCCCeEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999875
No 6
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-71 Score=546.27 Aligned_cols=266 Identities=32% Similarity=0.427 Sum_probs=239.5
Q ss_pred CCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC-------CHHHHHHhcCCCCCCEEEeccCchHHHHhhh
Q 012866 170 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD-------DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 242 (454)
Q Consensus 170 ~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~-------~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~ 242 (454)
+..+++|||||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||++++++|
T Consensus 2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~ 81 (284)
T PRK12549 2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL 81 (284)
T ss_pred CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence 345789999999999999999999999999999999999863 6899999998899999999999999999999
Q ss_pred hhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHH
Q 012866 243 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGA 322 (454)
Q Consensus 243 d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L 322 (454)
|++|+.|+.+||||||+++ +|+|+||||||.||+.+|++.. ..+++++|+|+|+||+||+++++|
T Consensus 82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL 146 (284)
T PRK12549 82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHAL 146 (284)
T ss_pred ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999987 8999999999999999987521 245689999999999999999999
Q ss_pred HHCCC-eEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866 323 KSRGA-RVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF 396 (454)
Q Consensus 323 ~~~G~-~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~ 396 (454)
...|+ +|+|+||+.++++++++++.... ..++++.+ .+.++|+||||||+||.|. +..|++.+++++..+|+
T Consensus 147 ~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~-~~~~aDiVInaTp~Gm~~~-~~~~~~~~~l~~~~~v~ 224 (284)
T PRK12549 147 LTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAA-ALAAADGLVHATPTGMAKH-PGLPLPAELLRPGLWVA 224 (284)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHh-hhCCCCEEEECCcCCCCCC-CCCCCCHHHcCCCcEEE
Confidence 99999 99999999999999999875321 22333333 3467999999999999875 34578888899999999
Q ss_pred EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866 397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452 (454)
Q Consensus 397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~ 452 (454)
|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus 225 DivY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~~wtg~~~~~~~~~~~~~~ 280 (284)
T PRK12549 225 DIVYFPLETELLRAARALGCRTLDGGGMAVFQAVDAFELFTGREPDAERMLAHFAS 280 (284)
T ss_pred EeeeCCCCCHHHHHHHHCCCeEecCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998765
No 7
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-70 Score=539.91 Aligned_cols=267 Identities=34% Similarity=0.557 Sum_probs=238.7
Q ss_pred cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 246 (454)
Q Consensus 169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 246 (454)
++.+|++|||||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|.|+|||||||++|+++||++|
T Consensus 5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~ 84 (289)
T PRK12548 5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS 84 (289)
T ss_pred cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence 5667889999999999999999999999999999999999994 79999999988899999999999999999999999
Q ss_pred HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866 247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 326 (454)
Q Consensus 247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G 326 (454)
+.|+.+||||||+++ +|+|+||||||.||+.+|++. ...+++|+++|+|+||+|||++++|++.|
T Consensus 85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlI~GAGGagrAia~~La~~G 149 (289)
T PRK12548 85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREH-------------GVDVKGKKLTVIGAGGAATAIQVQCALDG 149 (289)
T ss_pred HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 899999999999999998642 13467899999999999999999999999
Q ss_pred C-eEEEEeCCH---HHHHHHHHHhcCCc-------ccccc---ccccCCCCccEEEECCCCCCCCCCCCCCC-ChhcccC
Q 012866 327 A-RVVIFDIDF---ERAKSLASDVMGAA-------RPFED---ILNFQPEKGAILANATPLGMHPNTDRVPV-SEETLRD 391 (454)
Q Consensus 327 ~-~v~i~nRt~---~~a~~la~~~~~~~-------~~~~~---l~~~~~~~~divInat~~g~~p~~~~~~i-~~~~l~~ 391 (454)
+ +|+|+||+. ++++++++++.... .++++ +.+ ....+|+||||||+||.|..+..|+ +.+++.+
T Consensus 150 ~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~ 228 (289)
T PRK12548 150 AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVNATLVGMKPNDGETNIKDTSVFRK 228 (289)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCC
Confidence 9 699999997 88999988774211 22322 222 2456799999999999987666677 5678899
Q ss_pred CcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012866 392 YQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451 (454)
Q Consensus 392 ~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~ 451 (454)
..+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.
T Consensus 229 ~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~lwtg~~~~~~~~~~~~~ 288 (289)
T PRK12548 229 DLVVADTVYNPKKTKLLEDAEAAGCKTVGGLGMLLWQGAEAYKLYTGKDMPVEEVKELYF 288 (289)
T ss_pred CCEEEEecCCCCCCHHHHHHHHCCCeeeCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999864
No 8
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=6.6e-70 Score=534.22 Aligned_cols=269 Identities=32% Similarity=0.531 Sum_probs=242.5
Q ss_pred cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 246 (454)
Q Consensus 169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 246 (454)
++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|
T Consensus 1 ~~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~ 80 (278)
T PRK00258 1 ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELS 80 (278)
T ss_pred CCCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCC
Confidence 356789999999999999999999999999999999999999 589999999988899999999999999999999999
Q ss_pred HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866 247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 326 (454)
Q Consensus 247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G 326 (454)
+.|+.+||||||+++ +|+|+||||||.||+.+|++.+ +..+++++++|+|+||+||+++++|...|
T Consensus 81 ~~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~------------~~~~~~k~vlVlGaGg~a~ai~~aL~~~g 146 (278)
T PRK00258 81 ERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL------------GVDLKGKRILILGAGGAARAVILPLLDLG 146 (278)
T ss_pred HHHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc------------CCCCCCCEEEEEcCcHHHHHHHHHHHHcC
Confidence 999999999999976 8999999999999999986422 23577899999999999999999999999
Q ss_pred C-eEEEEeCCHHHHHHHHHHhcCCc-ccc-ccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC
Q 012866 327 A-RVVIFDIDFERAKSLASDVMGAA-RPF-EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR 403 (454)
Q Consensus 327 ~-~v~i~nRt~~~a~~la~~~~~~~-~~~-~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~ 403 (454)
+ +|+|+||+.+++++++++++... +.+ .++.+ .+.++|+||||||+||.|..+..|++.+++++..+|+|++|+|.
T Consensus 147 ~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~ 225 (278)
T PRK00258 147 VAEITIVNRTVERAEELAKLFGALGKAELDLELQE-ELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL 225 (278)
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhccceeecccchh-ccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCC
Confidence 6 99999999999999999886432 222 12222 35679999999999998765555777788999999999999999
Q ss_pred CCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452 (454)
Q Consensus 404 ~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~ 452 (454)
+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus 226 ~T~ll~~A~~~G~~~~~G~~Ml~~Qa~~~f~~wtg~~~~~~~~~~~~~~ 274 (278)
T PRK00258 226 PTPFLAWAKAQGARTIDGLGMLVHQAAEAFELWTGVRPPVEPMLAALRA 274 (278)
T ss_pred CCHHHHHHHHCcCeecCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
No 9
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-69 Score=527.24 Aligned_cols=262 Identities=32% Similarity=0.469 Sum_probs=234.4
Q ss_pred ccCCCccE-EEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866 168 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 246 (454)
Q Consensus 168 ~~~~~t~~-~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 246 (454)
+++.+|++ |||||+| ||+||.|||++|+++|+|+.|.+++.++++++++.++.++|.|+|||||||++|++|||++|
T Consensus 4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~ 81 (272)
T PRK12550 4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD 81 (272)
T ss_pred cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence 46677885 9999999 77889999999999999999999998899999999998999999999999999999999999
Q ss_pred HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866 247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 326 (454)
Q Consensus 247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G 326 (454)
+.|+.+||||||+++ +|+|+||||||.||+++|++. +.. .+++++|+||||+|||++++|.++|
T Consensus 82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~-~~~~vlilGaGGaarAi~~aL~~~g 145 (272)
T PRK12550 82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-------------QVP-PDLVVALRGSGGMAKAVAAALRDAG 145 (272)
T ss_pred HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-------------CCC-CCCeEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 899999999999999998642 122 3578999999999999999999999
Q ss_pred C-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC--CCCCCChhcccCCcEEEEEecCCC
Q 012866 327 A-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT--DRVPVSEETLRDYQLVFDAVYTPR 403 (454)
Q Consensus 327 ~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~--~~~~i~~~~l~~~~~v~D~~y~P~ 403 (454)
+ +|+|+||+.+++++|++.++.... +++ ....+|+||||||+||.|.. +..|++.+.+++..+|+|++|+|.
T Consensus 146 ~~~i~i~nR~~~~a~~la~~~~~~~~--~~~---~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~ 220 (272)
T PRK12550 146 FTDGTIVARNEKTGKALAELYGYEWR--PDL---GGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPA 220 (272)
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCcch--hhc---ccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCc
Confidence 9 899999999999999998753221 112 12458999999999998754 234688888999999999999999
Q ss_pred CCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452 (454)
Q Consensus 404 ~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~ 452 (454)
+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus 221 ~T~ll~~A~~~G~~~i~Gl~MLi~Qa~~~f~lwtg~~~~~~~~~~~~~~ 269 (272)
T PRK12550 221 ETPLIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELIAEAAAF 269 (272)
T ss_pred cCHHHHHHHHCcCeEeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754
No 10
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=100.00 E-value=4.7e-68 Score=521.25 Aligned_cols=263 Identities=29% Similarity=0.431 Sum_probs=225.8
Q ss_pred CccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC---CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHh
Q 012866 172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 248 (454)
Q Consensus 172 ~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~---~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~ 248 (454)
++++|||||+||+||+||.|||++|+++|+|+.|.+++++ ++.++++.++ .+|.|+|||||||++++++||++|+.
T Consensus 4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~ 82 (282)
T TIGR01809 4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR 82 (282)
T ss_pred CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence 4689999999999999999999999999999999999873 5888888774 49999999999999999999999999
Q ss_pred HhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-
Q 012866 249 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA- 327 (454)
Q Consensus 249 A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~- 327 (454)
|+.+||||||++++ +|+|+||||||.||+.+|++. + ....+++++++|||+||+||+++++|.++|+
T Consensus 83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~----~-------~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~ 150 (282)
T TIGR01809 83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANI----G-------KFEPLAGFRGLVIGAGGTSRAAVYALASLGVT 150 (282)
T ss_pred HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhh----C-------CccccCCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence 99999999999853 889999999999999998642 0 0013678999999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCc--ccc---ccccccCCCCccEEEECCCCCCCCCCCCCCCCh-------hcccCCcEE
Q 012866 328 RVVIFDIDFERAKSLASDVMGAA--RPF---EDILNFQPEKGAILANATPLGMHPNTDRVPVSE-------ETLRDYQLV 395 (454)
Q Consensus 328 ~v~i~nRt~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~divInat~~g~~p~~~~~~i~~-------~~l~~~~~v 395 (454)
+|+|+||+.+|+++|+++++... ..+ +++.. .+.++|+||||||+||... ...+.. +.+++..+|
T Consensus 151 ~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~-~~~~~DiVInaTp~g~~~~--~~~l~~~~~~~~~~~~~~~~~v 227 (282)
T TIGR01809 151 DITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLA-IEKAAEVLVSTVPADVPAD--YVDLFATVPFLLLKRKSSEGIF 227 (282)
T ss_pred eEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhh-cccCCCEEEECCCCCCCCC--HHHhhhhhhhhccccCCCCcEE
Confidence 89999999999999999885421 112 23323 3467899999999998432 111210 113467899
Q ss_pred EEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866 396 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450 (454)
Q Consensus 396 ~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~ 450 (454)
+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++
T Consensus 228 ~D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~ 282 (282)
T TIGR01809 228 LDAAYDPWPTPLVAIVSAAGWRVISGLQMLLHQGFAQFEQWTGMPAPREAMACAL 282 (282)
T ss_pred EEEeeCCCCCHHHHHHHHCCCEEECcHHHHHHHHHHHHHHHHCCCChHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999864
No 11
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=100.00 E-value=1.6e-66 Score=508.42 Aligned_cols=261 Identities=34% Similarity=0.553 Sum_probs=235.2
Q ss_pred cEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhH
Q 012866 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 251 (454)
Q Consensus 174 ~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ 251 (454)
++|||||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus 1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~ 80 (270)
T TIGR00507 1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL 80 (270)
T ss_pred CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence 47999999999999999999999999999999999994 7999999999889999999999999999999999999999
Q ss_pred ccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEE
Q 012866 252 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 331 (454)
Q Consensus 252 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i 331 (454)
+||||||+++ +|+|+||||||.||+++|++. ....++++++|+|+||+|++++++|.+.|++|++
T Consensus 81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-------------~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-------------IPLRPNQRVLIIGAGGAARAVALPLLKADCNVII 145 (270)
T ss_pred hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-------------CCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence 9999999977 899999999999999998641 1235678999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHH
Q 012866 332 FDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 407 (454)
Q Consensus 332 ~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~l 407 (454)
+||+.++++++++++... ..+.++. ...++|+||||||.||.+..+..+++.+.++++.+|+|++|+|.+|+|
T Consensus 146 ~~R~~~~~~~la~~~~~~~~~~~~~~~~~---~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~l 222 (270)
T TIGR00507 146 ANRTVSKAEELAERFQRYGEIQAFSMDEL---PLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPF 222 (270)
T ss_pred EeCCHHHHHHHHHHHhhcCceEEechhhh---cccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHH
Confidence 999999999999887531 1122221 234689999999999988765556777888999999999999999999
Q ss_pred HHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866 408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452 (454)
Q Consensus 408 l~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~ 452 (454)
+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus 223 l~~A~~~G~~~vdG~~Ml~~Qa~~~f~~w~g~~~~~~~~~~~~~~ 267 (270)
T TIGR00507 223 LAEAKSLGTKTIDGLGMLVAQAALAFELWTGVEPDIEKMFEQLIA 267 (270)
T ss_pred HHHHHHCCCeeeCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865
No 12
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.4e-43 Score=337.83 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=151.3
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccC--cchHHHHhh-hcCCCCeEEEEeeccCCCCCCHhH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEED 76 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~ 76 (454)
|+|||+|+++|||.+++++++|.++++.++..+ +||||||++. +.+..+++. ..+..++++|+|||||++||+.++
T Consensus 64 p~I~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~ 143 (238)
T PRK13575 64 KLLVTYRTKLQGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDE 143 (238)
T ss_pred CEEEEeCChhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHH
Confidence 899999999999999999999999998888765 8999999986 334455554 345689999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCC
Q 012866 77 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL 152 (454)
Q Consensus 77 l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~Ap 152 (454)
|.+++++|.++||||+|||+||++.+|+++|++++.+ .+.|+|+|+||+.|++||+++++|||++||+++++++||
T Consensus 144 l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAP 223 (238)
T PRK13575 144 LKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAP 223 (238)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCC
Confidence 9999999999999999999999999999999999653 367999999999999999999999999999999999999
Q ss_pred CCCChHhhhhhccc
Q 012866 153 GLPTVESLRQTYKV 166 (454)
Q Consensus 153 GQ~~~~~l~~~~~~ 166 (454)
||+++++|++++..
T Consensus 224 GQi~v~~l~~i~~~ 237 (238)
T PRK13575 224 GQIHVTDLKAQVTL 237 (238)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998753
No 13
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=331.66 Aligned_cols=166 Identities=25% Similarity=0.383 Sum_probs=154.3
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 79 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~ 79 (454)
|+|||+|+.+|||.|++++++|+++|+.+++.+ ++|||||++.+.+.++++...+ +..++|+|||||++||+++++.+
T Consensus 59 ~~IfT~R~~~EGG~~~~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~ 137 (231)
T COG0710 59 PLIFTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIE 137 (231)
T ss_pred ceEEEEeehhhcCCCCCCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHH
Confidence 899999999999999999999999999999975 9999999999987776776532 23339999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc---CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCC
Q 012866 80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPT 156 (454)
Q Consensus 80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~---~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~ 156 (454)
++.+|...|+||+|||+||++.+|++++++++.. ...|+|+||||..|++||+++++|||++||+++++++||||++
T Consensus 138 ~l~km~~~~aDivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~ 217 (231)
T COG0710 138 RLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQIS 217 (231)
T ss_pred HHHHHHhhCCCeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCC
Confidence 9999999999999999999999999999999875 6899999999999999999999999999999999999999999
Q ss_pred hHhhhhhcccc
Q 012866 157 VESLRQTYKVE 167 (454)
Q Consensus 157 ~~~l~~~~~~~ 167 (454)
++++++++...
T Consensus 218 v~~l~~~~~~l 228 (231)
T COG0710 218 VDELRKILTLL 228 (231)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 14
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=4.7e-43 Score=338.51 Aligned_cols=167 Identities=23% Similarity=0.374 Sum_probs=157.6
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG 78 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~ 78 (454)
|+|||+|+++|||+|++++++|+++|+.+++.| ++|||||++.+.+.++++.. .++.++++|+|||||++||+.++|.
T Consensus 76 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~ 155 (253)
T PRK02412 76 PLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIV 155 (253)
T ss_pred cEEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHH
Confidence 899999999999999999999999999999999 99999999998887777764 4668999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCC
Q 012866 79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLG 153 (454)
Q Consensus 79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApG 153 (454)
+++++|.++||||+|||+||++.+|+++++++..+ .+.|+|+|+||+.|++||+++++|||++||+++++++|||
T Consensus 156 ~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPG 235 (253)
T PRK02412 156 ERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPG 235 (253)
T ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCC
Confidence 99999999999999999999999999999998743 4689999999999999999999999999999999999999
Q ss_pred CCChHhhhhhcccc
Q 012866 154 LPTVESLRQTYKVE 167 (454)
Q Consensus 154 Q~~~~~l~~~~~~~ 167 (454)
|+++++|+++++..
T Consensus 236 Q~~~~el~~i~~~l 249 (253)
T PRK02412 236 QISVEDLRRILEIL 249 (253)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 15
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=100.00 E-value=7.8e-43 Score=332.68 Aligned_cols=164 Identities=29% Similarity=0.483 Sum_probs=153.4
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHH-HHhCCcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLA-EDLGADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG 78 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~-~~~~~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~ 78 (454)
|+|||+|+++|||.|++++++|+++|+.+ .+.++||||||++.+++..+++.. ++++++|+|+|||||++||+++++.
T Consensus 59 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~ 138 (228)
T TIGR01093 59 PLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIV 138 (228)
T ss_pred cEEEEECChhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHH
Confidence 89999999999999999999999999988 577899999999998887777764 4678999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccC----CCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCC
Q 012866 79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGL 154 (454)
Q Consensus 79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ 154 (454)
+++++|.++||||+|+|+||++.+|+++|++++.+. ++|+|+|+||+.|++||+++++|||++||++++.++||||
T Consensus 139 ~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ 218 (228)
T TIGR01093 139 ERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQ 218 (228)
T ss_pred HHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCC
Confidence 999999999999999999999999999999997543 5799999999999999999999999999999999999999
Q ss_pred CChHhhhhhc
Q 012866 155 PTVESLRQTY 164 (454)
Q Consensus 155 ~~~~~l~~~~ 164 (454)
+++++|++++
T Consensus 219 ~~~~~l~~~~ 228 (228)
T TIGR01093 219 ISVDDLRELL 228 (228)
T ss_pred cCHHHHHhhC
Confidence 9999999864
No 16
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=100.00 E-value=3.1e-41 Score=321.33 Aligned_cols=163 Identities=36% Similarity=0.537 Sum_probs=151.3
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhh-hcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGY 79 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~ 79 (454)
|+|||+|+++|||.|++++++|+++++.++++|++|||||++. + .++++. ..+++++|||+|||+|++||+.+++.+
T Consensus 57 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-~-~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~ 134 (225)
T cd00502 57 PIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-A-LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVS 134 (225)
T ss_pred CEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-h-HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHH
Confidence 8999999999999999999999999999999999999999998 3 344444 345689999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccC----CCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCC
Q 012866 80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLP 155 (454)
Q Consensus 80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~ 155 (454)
.+++|.++||||+|+|+||++.+|++++++++.+. +.|+|+|+||+.|++||+++++|||++||+++++++||||+
T Consensus 135 ~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~ 214 (225)
T cd00502 135 RLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQL 214 (225)
T ss_pred HHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCc
Confidence 99999999999999999999999999999997654 46999999999999999999999999999999999999999
Q ss_pred ChHhhhhhcc
Q 012866 156 TVESLRQTYK 165 (454)
Q Consensus 156 ~~~~l~~~~~ 165 (454)
+++++++++.
T Consensus 215 ~~~~l~~~~~ 224 (225)
T cd00502 215 SVEELKQALS 224 (225)
T ss_pred CHHHHHHHHh
Confidence 9999998875
No 17
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=100.00 E-value=3.9e-42 Score=327.37 Aligned_cols=165 Identities=33% Similarity=0.514 Sum_probs=142.5
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL 80 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~ 80 (454)
|+|||+|+++|||.+++++++|+++|+.+++.|++|||||++..++........+.++++||+|||||++||+++++.++
T Consensus 56 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~ 135 (224)
T PF01487_consen 56 PIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIEL 135 (224)
T ss_dssp EEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHH
T ss_pred CEEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999965544333333456899999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccC----CCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCC
Q 012866 81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPT 156 (454)
Q Consensus 81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~ 156 (454)
+++|.+.||||+|||+++++.+|+++|++++.+. +.|+|+|+||+.|++||+++++|||++||++.++++||||++
T Consensus 136 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~ 215 (224)
T PF01487_consen 136 LEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLT 215 (224)
T ss_dssp HHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EB
T ss_pred HHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCc
Confidence 9999999999999999999999999999997653 689999999999999999999999999999988899999999
Q ss_pred hHhhhhhcc
Q 012866 157 VESLRQTYK 165 (454)
Q Consensus 157 ~~~l~~~~~ 165 (454)
+++|+++|+
T Consensus 216 ~~~l~~~~~ 224 (224)
T PF01487_consen 216 LEELREILH 224 (224)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999874
No 18
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=7.8e-39 Score=299.51 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=134.6
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL 80 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~ 80 (454)
|+|||+|+++|||.+++++++|+++|+.+++.+. ++|||++...+.. ..+.++|+|||||++||+.++|.++
T Consensus 53 plI~T~R~~~EGG~~~~~~~~r~~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~ 124 (216)
T PRK13576 53 KLIVTLRDKAEGGINELDDELKISLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEI 124 (216)
T ss_pred CEEEEeCChHHCCCCcCCHHHHHHHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHH
Confidence 8999999999999999999999999999999975 7799998543211 1346899999999999999999999
Q ss_pred HHHHHhcCCCEEEEecccCCH-hHHH-HHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCChH
Q 012866 81 VSRMQATGADIIKLVFSVNDI-TEIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVE 158 (454)
Q Consensus 81 ~~~~~~~gadivKia~~~~~~-~D~~-~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~~~ 158 (454)
+++|.+ ||||+|||+||++. .|++ +|++ . ..+|+|+||+.| +||+++++|||++||+++++++||||++++
T Consensus 125 l~~m~~-gaDI~KiA~mp~~~~~d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~ 197 (216)
T PRK13576 125 VSKFYE-KAFSVKIAVLGLKGYKEVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYK 197 (216)
T ss_pred HHHHHh-cCCEEEEEeCCCCchHhHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHH
Confidence 999987 99999999999985 6665 6664 2 245889999999 999999999999999999999999999999
Q ss_pred hhhhhcccc
Q 012866 159 SLRQTYKVE 167 (454)
Q Consensus 159 ~l~~~~~~~ 167 (454)
+|+++++..
T Consensus 198 ~l~~i~~~l 206 (216)
T PRK13576 198 KVKQILNYL 206 (216)
T ss_pred HHHHHHHHH
Confidence 999999854
No 19
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-36 Score=302.73 Aligned_cols=429 Identities=14% Similarity=0.042 Sum_probs=354.5
Q ss_pred CEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHH
Q 012866 1 MLCNVSRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDL 77 (454)
Q Consensus 1 p~l~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l 77 (454)
|.|+|.|.+||||. .++...++-.-++..++++.+|+|.|+....++...+-....+..+||.+.|+++.+| +
T Consensus 151 ~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i 226 (595)
T KOG0692|consen 151 KTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP----I 226 (595)
T ss_pred HHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC----c
Confidence 46899999999998 8888877766677888999999999999887766555544445569999999999999 6
Q ss_pred HHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCC-C-CCCCCC
Q 012866 78 GYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG-T-PVLGLP 155 (454)
Q Consensus 78 ~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~-~-~ApGQ~ 155 (454)
..+...+++.||||.|++.+...+-|+. ....++..++|+++.-||+.+..+|+++|+++.++|+..+++ + ++|+|.
T Consensus 227 ~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~ 305 (595)
T KOG0692|consen 227 GDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVE 305 (595)
T ss_pred hHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchh
Confidence 7777888889999999999999999998 666677789999999999999999999999999999999985 4 999999
Q ss_pred ChHhhhhhc--cccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEE-ecc
Q 012866 156 TVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS-VGF 232 (454)
Q Consensus 156 ~~~~l~~~~--~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~-VT~ 232 (454)
..-.|.+.| ++.+....++.|++.|.|+.|+.+|.+||.+|.+--.++.|.-..++..-+++......++.||+ |+.
T Consensus 306 mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~ 385 (595)
T KOG0692|consen 306 MTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLE 385 (595)
T ss_pred HHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhc
Confidence 999999999 78899999999999999999999999999999999999998877766555566555566899999 999
Q ss_pred CchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCC----CCCCCCCCCceEEE
Q 012866 233 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGT----ASFGSPLAGRMFVL 308 (454)
Q Consensus 233 P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~----~~~~~~~~~k~vlV 308 (454)
|||.++...+|++++.+.-+||+|++.++..|+...++|+|..+-+.++...+. +.+.+ +-. ...-.++..|
T Consensus 386 pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~---s~gdptti~~~a-s~rvket~r~ 461 (595)
T KOG0692|consen 386 PMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLR---SSGDPTTIRDVA-SWRVKETERM 461 (595)
T ss_pred cccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhccc---CCCCCccccccc-chhHHHHHHH
Confidence 999999999999999999999999998775688999999999999998876543 22211 000 1122356778
Q ss_pred EccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhc
Q 012866 309 AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEET 388 (454)
Q Consensus 309 iGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~ 388 (454)
||.|+..++..+...+.+..++|.||+ +|+-++++..+. .+++|=. ....+.++-+|++.+ +...+.++....
T Consensus 462 ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~ae~~g~--~TydDhr--~am~fsvLA~~~~~~--~~i~d~~ct~kt 534 (595)
T KOG0692|consen 462 IAICTELRKLGATVEEGSDGYCVITPP-EKKLKLAEIDGS--LTYDDHR--MAMAFSVLAACADVP--ITINDPGCTRKT 534 (595)
T ss_pred HHHHHHHHHhcccccccCceEEEeCCc-hHhccchhhccc--ccccccc--chhhhhHHHhccCCC--ccccCCCccccc
Confidence 999999999999888888889999999 888888876422 2233211 234566777778766 455555666666
Q ss_pred ccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 012866 389 LRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449 (454)
Q Consensus 389 l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~ 449 (454)
|+.-..|+|-+|.|+-|.+ ++.+.|.... -+|++.|+.+||+.++|+.++.++-.+.
T Consensus 535 ~p~y~~Vl~~~~~~kltga--eple~~a~kn--ssm~vigmr~agkttigk~~akeL~~ki 591 (595)
T KOG0692|consen 535 FPDYFQVLERITKHKLTGA--EPLESGAIKN--SSMFVIGMREAGKTTIGKPAAKELYWKI 591 (595)
T ss_pred cchHHHHHHHHhhcccccc--Chhhcccccc--ceeeeehhhhcCceecCccchHHhCeee
Confidence 7776779999999999986 8888887655 9999999999999999999999876553
No 20
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.3e-32 Score=260.02 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=125.1
Q ss_pred CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866 1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL 80 (454)
Q Consensus 1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~ 80 (454)
|+|||+|+. ++ .++++.+++.+++|||||++...++ ..+..++++|+||| ||+.++|.++
T Consensus 78 p~I~T~R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~ 137 (229)
T PRK01261 78 DYIFTYRGV--------DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAI 137 (229)
T ss_pred CEEEEEcCC--------CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHH
Confidence 899999953 22 4788888888899999999873332 22457999999999 6888999999
Q ss_pred HHHHHhcCCCEEEEecccCCHhHHHHHHHH----hccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCC
Q 012866 81 VSRMQATGADIIKLVFSVNDITEIARIFQL----LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPT 156 (454)
Q Consensus 81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~----~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~ 156 (454)
+++|.+.||||+|||+||++.+|+++++.. ..+.+.|+|+|+||+ ++||+++++|||++||+++++++||||++
T Consensus 138 l~~m~~~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~ 215 (229)
T PRK01261 138 LDIMNEKNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPK 215 (229)
T ss_pred HHHHHHhCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCC
Confidence 999999999999999999999998776643 344578999999999 99999999999999999999999999999
Q ss_pred hHhhhhhccc
Q 012866 157 VESLRQTYKV 166 (454)
Q Consensus 157 ~~~l~~~~~~ 166 (454)
+++|+++++.
T Consensus 216 v~~l~~~~~~ 225 (229)
T PRK01261 216 RDYYESAFIK 225 (229)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 21
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=99.95 E-value=4.5e-29 Score=200.05 Aligned_cols=81 Identities=40% Similarity=0.815 Sum_probs=75.1
Q ss_pred EecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHccce
Q 012866 178 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV 255 (454)
Q Consensus 178 liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igav 255 (454)
|||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus 1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv 80 (83)
T PF08501_consen 1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV 80 (83)
T ss_dssp EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence 7999999999999999999999999999999996 99999999988999999999999999999999999999999999
Q ss_pred eEE
Q 012866 256 NTI 258 (454)
Q Consensus 256 NTi 258 (454)
|||
T Consensus 81 Ntv 83 (83)
T PF08501_consen 81 NTV 83 (83)
T ss_dssp SEE
T ss_pred ccC
Confidence 997
No 22
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.93 E-value=8.2e-25 Score=213.79 Aligned_cols=184 Identities=20% Similarity=0.303 Sum_probs=153.3
Q ss_pred EEEecCCCCcccCHHHHHHHHHhcCCCceEEec--cc--CCHHHHHHhcC-CCCCCEEEeccCchHHHHh--hhhhcCHh
Q 012866 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYS-SPDFAGFSVGFPYKEAVMK--FCDEVHPL 248 (454)
Q Consensus 176 ~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~--~~--~~~~~~~~~l~-~~~~~G~~VT~P~K~~v~~--~~d~~~~~ 248 (454)
.-++|+.-+.-.--.+||++|+++|+++.|.++ ++ +++.+.++.|+ +.++.|++||+|||+.+.+ ++|++ +.
T Consensus 38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~ 116 (283)
T PRK14192 38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL 116 (283)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence 445664333333346999999999999999999 55 37888888885 4489999999999999999 99999 99
Q ss_pred HhHccceeEEEEeCCCCe------EEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866 249 AQAIAAVNTIIRRPSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG 321 (454)
Q Consensus 249 A~~igavNTi~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~ 321 (454)
++.++++||+ + +|+ ++|+||| .||++.|+.. +.+++||+|+|+|+|| +||+++..
T Consensus 117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~ 178 (283)
T PRK14192 117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMM 178 (283)
T ss_pred HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999998 3 466 8999999 9999998752 3678999999999999 99999999
Q ss_pred HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866 322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
|.+.|+.|++++| +++.+++. ..++|+|||||+ .|. +++.++++++.+|+|+.|+
T Consensus 179 L~~~gatVtv~~~---~t~~L~~~---------------~~~aDIvI~AtG---~~~----~v~~~~lk~gavViDvg~n 233 (283)
T PRK14192 179 LLNANATVTICHS---RTQNLPEL---------------VKQADIIVGAVG---KPE----LIKKDWIKQGAVVVDAGFH 233 (283)
T ss_pred HHhCCCEEEEEeC---CchhHHHH---------------hccCCEEEEccC---CCC----cCCHHHcCCCCEEEEEEEe
Confidence 9999999999998 34444443 246899999994 232 6888999999999999999
Q ss_pred CC
Q 012866 402 PR 403 (454)
Q Consensus 402 P~ 403 (454)
|.
T Consensus 234 ~~ 235 (283)
T PRK14192 234 PR 235 (283)
T ss_pred ec
Confidence 94
No 23
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.92 E-value=8.1e-24 Score=189.44 Aligned_cols=152 Identities=38% Similarity=0.619 Sum_probs=127.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc
Q 012866 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA 350 (454)
Q Consensus 272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~ 350 (454)
||+.||.+++++. +.++++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++++++++...
T Consensus 1 td~~g~~~a~~~~-------------~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~ 67 (155)
T cd01065 1 TDGLGFVRALEEA-------------GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG 67 (155)
T ss_pred CCHHHHHHHHHhh-------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc
Confidence 8999999998752 234678999999999999999999999975 89999999999999998876431
Q ss_pred --cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHH
Q 012866 351 --RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ 428 (454)
Q Consensus 351 --~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Q 428 (454)
....+..+ ...++|+||+|||.+..+. +..++....++++.+++|++|.|..|++.++++++|+.+++|++||++|
T Consensus 68 ~~~~~~~~~~-~~~~~Dvvi~~~~~~~~~~-~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~~~~q 145 (155)
T cd01065 68 IAIAYLDLEE-LLAEADLIINTTPVGMKPG-DELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEMLVYQ 145 (155)
T ss_pred cceeecchhh-ccccCCEEEeCcCCCCCCC-CCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHHHHHH
Confidence 12333333 3567999999999887522 3334555667889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 012866 429 AIGQFNLFTG 438 (454)
Q Consensus 429 a~~~f~lw~g 438 (454)
++.||++|||
T Consensus 146 ~~~~~~~~~~ 155 (155)
T cd01065 146 AAEAFELWTG 155 (155)
T ss_pred HHHHHHHhcC
Confidence 9999999997
No 24
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=99.68 E-value=9.5e-17 Score=140.80 Aligned_cols=98 Identities=39% Similarity=0.579 Sum_probs=80.1
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~ 375 (454)
++++++++|+||||+||+++++|...|+ +|+|+|||.+|+++|++.++.. ..+++++.+ .+.++|+||||||+||
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~-~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEE-ALQEADIVINATPSGM 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCH-HHHTESEEEE-SSTTS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHH-HHhhCCeEEEecCCCC
Confidence 5789999999999999999999999999 7999999999999999999543 456777664 4567999999999998
Q ss_pred CCCCCCCCCChhcccCC----cEEEEEecCCCCC
Q 012866 376 HPNTDRVPVSEETLRDY----QLVFDAVYTPRKT 405 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~----~~v~D~~y~P~~T 405 (454)
. ++..+.+.+. .+++|+.+ |++.
T Consensus 88 ~------~i~~~~~~~~~~~~~~v~Dla~-Pr~i 114 (135)
T PF01488_consen 88 P------IITEEMLKKASKKLRLVIDLAV-PRDI 114 (135)
T ss_dssp T------SSTHHHHTTTCHHCSEEEES-S-S-SB
T ss_pred c------ccCHHHHHHHHhhhhceecccc-CCCC
Confidence 5 4667777665 59999986 6543
No 25
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.64 E-value=5.1e-16 Score=147.78 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=97.4
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHHH-------HHHHHHhcCCccccccccccCCCCc
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FERA-------KSLASDVMGAARPFEDILNFQPEKG 364 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt----~~~a-------~~la~~~~~~~~~~~~l~~~~~~~~ 364 (454)
.++++++++|+|||++|++++..|.+.|+ +|+|+||+ .+++ +++++.++...... ++.+ .+.++
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~-~l~~-~l~~~ 98 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGG-TLKE-ALKGA 98 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccC-CHHH-HHhcC
Confidence 46889999999999999999999999997 59999999 5654 55666654221111 2323 34568
Q ss_pred cEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHHHHHHHHHHH
Q 012866 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQ 432 (454)
Q Consensus 365 divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~mlv~Qa~~~ 432 (454)
|+|||+||.||.+. ...+.+.+..++||++ +|..|+++++|++.|++ +.+|..|++.|+--.
T Consensus 99 dvlIgaT~~G~~~~-----~~l~~m~~~~ivf~ls-nP~~e~~~~~A~~~ga~i~a~G~~~~~~Q~nn~ 161 (226)
T cd05311 99 DVFIGVSRPGVVKK-----EMIKKMAKDPIVFALA-NPVPEIWPEEAKEAGADIVATGRSDFPNQVNNV 161 (226)
T ss_pred CEEEeCCCCCCCCH-----HHHHhhCCCCEEEEeC-CCCCcCCHHHHHHcCCcEEEeCCCCCcccccee
Confidence 99999999888541 1122344778999866 99999999999999996 999999999999544
No 26
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=99.60 E-value=7.6e-15 Score=136.63 Aligned_cols=166 Identities=23% Similarity=0.229 Sum_probs=125.1
Q ss_pred EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 269 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
|-||-....+..+++.+.+ .+.++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+.
T Consensus 3 G~~~ta~aav~~~~~~l~~---------~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~ 73 (194)
T cd01078 3 GSNTTAAAAVAAAGKALEL---------MGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR 73 (194)
T ss_pred CcHHHHHHHHHHHHHHHHH---------hCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 4567777777777776652 135678999999996 999999999999999999999999999999988764
Q ss_pred C----Cc--c---ccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHC----
Q 012866 348 G----AA--R---PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA---- 414 (454)
Q Consensus 348 ~----~~--~---~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~---- 414 (454)
. .. . +.+++.+ .+.++|+||+|||.|+... ........+..+++|++|.|..++...+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~-~~~~~diVi~at~~g~~~~----~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~ 148 (194)
T cd01078 74 ARFGEGVGAVETSDDAARAA-AIKGADVVFAAGAAGVELL----EKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDR 148 (194)
T ss_pred hhcCCcEEEeeCCCHHHHHH-HHhcCCEEEECCCCCceec----hhhhcccCceeEEEEccCCCCCCcccccccCCceec
Confidence 2 11 1 1122223 3567899999999998511 11122344567999999999999888888776
Q ss_pred ------CCceeccHHHHHHHHHHHHHHhc--CCCCCHHHHHHH
Q 012866 415 ------GAIIVSGVEMFLRQAIGQFNLFT--GKEAPKEFMREI 449 (454)
Q Consensus 415 ------G~~~~~Gl~mlv~Qa~~~f~lw~--g~~~p~~~~~~~ 449 (454)
|.....|+.|.++|+... |.|. ++..+.+.+.+.
T Consensus 149 ~g~~~~g~~~~~g~~~~~~~~~~a-e~~~~~~~~~~~~~~~~~ 190 (194)
T cd01078 149 EGKVPYGAIGVGGLKMKTHRACIA-KLFESNPLVLDAEEIYDL 190 (194)
T ss_pred CCCeEEEeeccchhHHHHHHHHHH-HHhhcCCeeechHHHHHH
Confidence 667789999999999877 8888 666777766554
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.48 E-value=2.1e-13 Score=134.38 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=105.7
Q ss_pred EEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 267 LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 267 l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
...+|+...+-.. +...+. .....+++++++|+|+|++|++++..|..+|++|+++||+.++.+... ..
T Consensus 125 va~~n~~~~Ae~a-i~~al~---------~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~ 193 (287)
T TIGR02853 125 VAIYNSIPTAEGA-IMMAIE---------HTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-EM 193 (287)
T ss_pred eEEEccHhHHHHH-HHHHHH---------hcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC
Confidence 5668887776221 111122 013568899999999999999999999999999999999988765543 33
Q ss_pred cCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee--ccHHH
Q 012866 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEM 424 (454)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~--~Gl~m 424 (454)
+.....++++.+ .+.++|+||||+|.++.+. . ..+.++++.+++|+.|+|..|+| +.|+++|++++ +|+.+
T Consensus 194 g~~~~~~~~l~~-~l~~aDiVint~P~~ii~~---~--~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~~~~glPg 266 (287)
T TIGR02853 194 GLIPFPLNKLEE-KVAEIDIVINTIPALVLTA---D--VLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKALLAPGLPG 266 (287)
T ss_pred CCeeecHHHHHH-HhccCCEEEECCChHHhCH---H--HHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEEEeCCCCc
Confidence 444445555555 4578999999999875321 1 12346788999999999999999 99999999987 88876
Q ss_pred HH
Q 012866 425 FL 426 (454)
Q Consensus 425 lv 426 (454)
.+
T Consensus 267 ~~ 268 (287)
T TIGR02853 267 IV 268 (287)
T ss_pred cc
Confidence 65
No 28
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=99.38 E-value=1.2e-12 Score=131.43 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=98.5
Q ss_pred hHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHH-HCCC-
Q 012866 250 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA- 327 (454)
Q Consensus 250 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~-~~G~- 327 (454)
..+|++|+++.+ ++.|+|+|||+.|++.+.. +. ....++++|||+|++|++.+.+|. ..++
T Consensus 93 ~~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~ 155 (326)
T TIGR02992 93 SRTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIR 155 (326)
T ss_pred CCCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCcc
Confidence 356999999766 7899999999999998853 22 123578999999999999999997 4787
Q ss_pred eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866 328 RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 328 ~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
+|+|+||+.++++++++++.. .....+++++ .+.++|+||+|||... | .+..++++++..+..+-
T Consensus 156 ~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~-av~~aDiVvtaT~s~~-p-----~i~~~~l~~g~~i~~vg 224 (326)
T TIGR02992 156 SARIWARDSAKAEALALQLSSLLGIDVTAATDPRA-AMSGADIIVTTTPSET-P-----ILHAEWLEPGQHVTAMG 224 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-HhccCCEEEEecCCCC-c-----EecHHHcCCCcEEEeeC
Confidence 899999999999999988742 2223445544 4578999999998632 2 36678899988887774
No 29
>PRK08291 ectoine utilization protein EutC; Validated
Probab=99.37 E-value=1.7e-12 Score=130.74 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=96.7
Q ss_pred hHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCC-
Q 012866 250 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA- 327 (454)
Q Consensus 250 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~- 327 (454)
..+|++|||+.+ +++|+|+|||+.|++.+.. +. ....++++|+|+|++|++.+.++.. .++
T Consensus 96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~ 158 (330)
T PRK08291 96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR 158 (330)
T ss_pred CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence 467999999766 7899999999999999863 21 1235789999999999999999985 577
Q ss_pred eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE
Q 012866 328 RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA 398 (454)
Q Consensus 328 ~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~ 398 (454)
+|+|+||+.++++++++++.. ....++++++ .+.++|+||+|||... | .+..++++++..+..+
T Consensus 159 ~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~-al~~aDiVi~aT~s~~-p-----~i~~~~l~~g~~v~~v 226 (330)
T PRK08291 159 EVRVWARDAAKAEAYAADLRAELGIPVTVARDVHE-AVAGADIIVTTTPSEE-P-----ILKAEWLHPGLHVTAM 226 (330)
T ss_pred EEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHH-HHccCCEEEEeeCCCC-c-----EecHHHcCCCceEEee
Confidence 899999999999999987742 2222344444 4567999999998642 2 3566788888777666
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.30 E-value=4.1e-12 Score=125.86 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=95.1
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+.+++++|+|+|++|++++..|+.+|++|++++|+.++. +.++.++.....++++.+ .+.++|+||||+|..+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~~~G~~~~~~~~l~~-~l~~aDiVI~t~p~~~--- 222 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARITEMGLSPFHLSELAE-EVGKIDIIFNTIPALV--- 222 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeeecHHHHHH-HhCCCCEEEECCChhh---
Confidence 45678999999999999999999999999999999998764 344556655555555555 4578999999998643
Q ss_pred CCCCCCCh---hcccCCcEEEEEecCCCCCHHHHHHHHCCCcee--ccHHHHH
Q 012866 379 TDRVPVSE---ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEMFL 426 (454)
Q Consensus 379 ~~~~~i~~---~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~--~Gl~mlv 426 (454)
+.. +.++++.+++|+.|+|..|.| +.|+++|++++ +|+.+.+
T Consensus 223 -----i~~~~l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 223 -----LTKEVLSKMPPEALIIDLASKPGGTDF-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred -----hhHHHHHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEEEECCCCccC
Confidence 222 246788999999999999998 89999999987 8888776
No 31
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=99.27 E-value=1.8e-11 Score=126.24 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=95.7
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
++.+++++|+|+||||++++.+|...|+ +|+|+|||.++|++++++++ ....+++++.+ .+.++|+|||||+... |
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~-~l~~aDiVI~aT~a~~-~ 255 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQ-LIKKADIIIAAVNVLE-Y 255 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHH-HhccCCEEEECcCCCC-e
Confidence 4778999999999999999999999998 89999999999999999997 55567777765 5678999999998743 1
Q ss_pred CCCCCCCChhccc-CCcEEEEEecCCCCC-------------------HHHHHHHHCCCceeccHHHHHHHHHHHHHHhc
Q 012866 378 NTDRVPVSEETLR-DYQLVFDAVYTPRKT-------------------RLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFT 437 (454)
Q Consensus 378 ~~~~~~i~~~~l~-~~~~v~D~~y~P~~T-------------------~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~ 437 (454)
.+..+.+. ...+++|+. .|++- ....+..+.....+.-.+.++.+.+..|.-|.
T Consensus 256 -----vi~~~~~~~~~~~~iDLa-vPRdidp~v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~ 329 (414)
T PRK13940 256 -----IVTCKYVGDKPRVFIDIS-IPQALDPKLGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKE 329 (414)
T ss_pred -----eECHHHhCCCCeEEEEeC-CCCCCCccccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12332222 224666664 34321 11111222223345567788999999999998
Q ss_pred CCC
Q 012866 438 GKE 440 (454)
Q Consensus 438 g~~ 440 (454)
...
T Consensus 330 ~~~ 332 (414)
T PRK13940 330 KAI 332 (414)
T ss_pred Hhc
Confidence 543
No 32
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=99.27 E-value=1.3e-11 Score=125.61 Aligned_cols=195 Identities=18% Similarity=0.224 Sum_probs=129.8
Q ss_pred HHHHhhhhhcCHhHhHccceeEEEEeC-----------CCCeEEEeeccHHHHHHH--HHHHHHhcCCCCCCCCCCCCCC
Q 012866 236 EAVMKFCDEVHPLAQAIAAVNTIIRRP-----------SDGKLIGYNTDCEASITA--IEDAIKERGYKNGTASFGSPLA 302 (454)
Q Consensus 236 ~~v~~~~d~~~~~A~~igavNTi~~~~-----------~~g~l~G~NTD~~G~~~~--l~~~l~~~~~~~~~~~~~~~~~ 302 (454)
.+|+..+.+.-..|+.-|.+.+++..- ..-+-+|.|--.++.... .++. ..+++
T Consensus 111 ~QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~-------------~~~L~ 177 (414)
T COG0373 111 TQILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRI-------------FGSLK 177 (414)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHH-------------hcccc
Confidence 456666666666777777666655320 012345555555554332 1221 13478
Q ss_pred CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
++++||||||.|+..++.+|.+.|+ +|+|+|||.+||++||++++..+++++++.+ .+.++|+||.+|+... |....
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~-~l~~~DvVissTsa~~-~ii~~ 255 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLE-ALAEADVVISSTSAPH-PIITR 255 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHH-hhhhCCEEEEecCCCc-cccCH
Confidence 9999999999999999999999998 9999999999999999999988889999887 7889999999998632 22111
Q ss_pred CCCChhccc-CCcEEEEEecCCCCCH---------------HHHHH----HHCCCceeccHHHHHHHHHHHHHHhcCCCC
Q 012866 382 VPVSEETLR-DYQLVFDAVYTPRKTR---------------LLKDA----EAAGAIIVSGVEMFLRQAIGQFNLFTGKEA 441 (454)
Q Consensus 382 ~~i~~~~l~-~~~~v~D~~y~P~~T~---------------ll~~A----~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~ 441 (454)
..+...+-. ...+++|+. .|++.+ -++.. .+..-....-.+.++++.+..|..|....-
T Consensus 256 ~~ve~a~~~r~~~livDia-vPRdie~~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~ae~iIeee~~~~~~~l~~~~ 334 (414)
T COG0373 256 EMVERALKIRKRLLIVDIA-VPRDVEPEVGELPNVFLYTIDDLEEIVEENLEARKEEAAKAEAIIEEELAEFMEWLKKLE 334 (414)
T ss_pred HHHHHHHhcccCeEEEEec-CCCCCCccccCcCCeEEEehhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111111 225889997 465421 12222 222334566677889999999999986544
Q ss_pred CHHHH
Q 012866 442 PKEFM 446 (454)
Q Consensus 442 p~~~~ 446 (454)
-.+.+
T Consensus 335 ~~~~i 339 (414)
T COG0373 335 VVPTI 339 (414)
T ss_pred chHHH
Confidence 44433
No 33
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=99.24 E-value=8.5e-12 Score=129.73 Aligned_cols=189 Identities=22% Similarity=0.296 Sum_probs=131.5
Q ss_pred chHHHHhhhhhcCHhHhHccceeEEEEeC-----CCCeEEEeeccHHHHHH-----HHHHHHHhcCCCCCCCCCCCCCCC
Q 012866 234 YKEAVMKFCDEVHPLAQAIAAVNTIIRRP-----SDGKLIGYNTDCEASIT-----AIEDAIKERGYKNGTASFGSPLAG 303 (454)
Q Consensus 234 ~K~~v~~~~d~~~~~A~~igavNTi~~~~-----~~g~l~G~NTD~~G~~~-----~l~~~l~~~~~~~~~~~~~~~~~~ 303 (454)
=+.+|+.+|++....|+..|++|+++..- .-++..+++|+..+.-. +++.... ...++.+
T Consensus 113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~----------~~~~~~~ 182 (423)
T PRK00045 113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQ----------IFGDLSG 182 (423)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHH----------hhCCccC
Confidence 36788999999999999999999988310 13567777777655321 2221110 0013678
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 382 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~ 382 (454)
++++|+|+|++|+.++..|...|+ +|+++||+.++++++++.++....+++++.+ .+.++|+||+||+... |
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVI~aT~s~~-~----- 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPE-ALAEADIVISSTGAPH-P----- 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHH-HhccCCEEEECCCCCC-c-----
Confidence 999999999999999999999998 8999999999999999998765555555544 4567999999997532 1
Q ss_pred CCChhccc--------CCcEEEEEecCCCCCH---------------HHHH----HHHCCCceeccHHHHHHHHHHHHHH
Q 012866 383 PVSEETLR--------DYQLVFDAVYTPRKTR---------------LLKD----AEAAGAIIVSGVEMFLRQAIGQFNL 435 (454)
Q Consensus 383 ~i~~~~l~--------~~~~v~D~~y~P~~T~---------------ll~~----A~~~G~~~~~Gl~mlv~Qa~~~f~l 435 (454)
.+..++++ ...+++|+. .|++.. -+++ ..+.....+.-.+-++.+.+..|.-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~f~~ 334 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA-VPRDIEPEVGELPGVYLYDVDDLQEIVEENLAQRQEAAEKAEAIVEEEVAEFME 334 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC-CCCCCcccccccCCeEEEEHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444442 346899997 455311 1111 1112233455667789999999999
Q ss_pred hcCCC
Q 012866 436 FTGKE 440 (454)
Q Consensus 436 w~g~~ 440 (454)
|....
T Consensus 335 ~~~~~ 339 (423)
T PRK00045 335 WLRSL 339 (423)
T ss_pred HHHhc
Confidence 98654
No 34
>PLN00203 glutamyl-tRNA reductase
Probab=98.85 E-value=1.2e-08 Score=107.94 Aligned_cols=187 Identities=14% Similarity=0.225 Sum_probs=121.2
Q ss_pred hHHHHhhhhhcCHhHhHccceeEEEEeC-----------CCCeEEEeeccHHH--HHHHHHHHHHhcCCCCCCCCCCCCC
Q 012866 235 KEAVMKFCDEVHPLAQAIAAVNTIIRRP-----------SDGKLIGYNTDCEA--SITAIEDAIKERGYKNGTASFGSPL 301 (454)
Q Consensus 235 K~~v~~~~d~~~~~A~~igavNTi~~~~-----------~~g~l~G~NTD~~G--~~~~l~~~l~~~~~~~~~~~~~~~~ 301 (454)
-.+|+..+.+.-..|+..|.++.++.+- .+.+-+|.+-=..+ .+...++.++ ..++
T Consensus 196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~-----------~~~l 264 (519)
T PLN00203 196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP-----------ESSH 264 (519)
T ss_pred ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC-----------CCCC
Confidence 4578888888899999999888776430 01112222222222 1222222111 1237
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
.+++++|||+|++|++++.+|...|+ +|+|+||+.++++.++++++.. ..+++++.+ .+.++|+||+||+.+. |
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~-al~~aDVVIsAT~s~~-p 342 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA-CAAEADVVFTSTSSET-P 342 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH-HHhcCCEEEEccCCCC-C
Confidence 78999999999999999999999998 8999999999999999988532 234455544 4578999999998653 2
Q ss_pred CCCCCCCChhccc----------CCcEEEEEecCCCCC-------------------HHHHHHHHCCCceeccHHHHHHH
Q 012866 378 NTDRVPVSEETLR----------DYQLVFDAVYTPRKT-------------------RLLKDAEAAGAIIVSGVEMFLRQ 428 (454)
Q Consensus 378 ~~~~~~i~~~~l~----------~~~~v~D~~y~P~~T-------------------~ll~~A~~~G~~~~~Gl~mlv~Q 428 (454)
.+..++++ ...+++|+.- |++. ....+.++.......-.+.+|.+
T Consensus 343 -----vI~~e~l~~~~~~~~~~~~~~~~IDLAv-PRdIdp~v~~l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II~e 416 (519)
T PLN00203 343 -----LFLKEHVEALPPASDTVGGKRLFVDISV-PRNVGACVSELESARVYNVDDLKEVVAANKEDRLRKAMEAQTIIRE 416 (519)
T ss_pred -----eeCHHHHHHhhhcccccCCCeEEEEeCC-CCCCccccccCCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 23333331 1247778763 4421 11122222233345667788999
Q ss_pred HHHHHHHhcCCC
Q 012866 429 AIGQFNLFTGKE 440 (454)
Q Consensus 429 a~~~f~lw~g~~ 440 (454)
.+..|.-|....
T Consensus 417 e~~~F~~w~~~~ 428 (519)
T PLN00203 417 ESKNFEAWRDSL 428 (519)
T ss_pred HHHHHHHHHHhc
Confidence 999999998654
No 35
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.81 E-value=1.6e-08 Score=105.15 Aligned_cols=134 Identities=24% Similarity=0.343 Sum_probs=96.2
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
.+.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++...++++++.+ .+.++|+||+||+... |
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~-~l~~aDvVi~aT~s~~-~- 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEE-YLAEADIVISSTGAPH-P- 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHH-HHhhCCEEEECCCCCC-c-
Confidence 3678999999999999999999999996 9999999999999999998765555566555 4568999999997532 1
Q ss_pred CCCCCCChhcccC-------CcEEEEEecCCCCCH---------------HHHHHHHC----CCceeccHHHHHHHHHHH
Q 012866 379 TDRVPVSEETLRD-------YQLVFDAVYTPRKTR---------------LLKDAEAA----GAIIVSGVEMFLRQAIGQ 432 (454)
Q Consensus 379 ~~~~~i~~~~l~~-------~~~v~D~~y~P~~T~---------------ll~~A~~~----G~~~~~Gl~mlv~Qa~~~ 432 (454)
.+..+++.+ ..+++|+. .|++.. -+++.-+. ....+.-.+-++.+.+..
T Consensus 254 ----ii~~e~l~~~~~~~~~~~~viDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~ 328 (417)
T TIGR01035 254 ----IVSKEDVERALRERTRPLFIIDIA-VPRDVDPAVARLEGVFLYDVDDLQPVVEENLAERREEAEKAEEIVEEETAE 328 (417)
T ss_pred ----eEcHHHHHHHHhcCCCCeEEEEeC-CCCCCChhhcCcCCeEEEEHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 244444421 24899998 565321 11222121 222355566788899999
Q ss_pred HHHhcCCCC
Q 012866 433 FNLFTGKEA 441 (454)
Q Consensus 433 f~lw~g~~~ 441 (454)
|.-|.....
T Consensus 329 f~~w~~~~~ 337 (417)
T TIGR01035 329 FKQWLRSLE 337 (417)
T ss_pred HHHHHHhcc
Confidence 999986543
No 36
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=4.9e-07 Score=88.46 Aligned_cols=214 Identities=15% Similarity=0.212 Sum_probs=131.4
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP 247 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 247 (454)
.-++| +|-+++.-- .--+..+++|++.....++-+ ++...++.+ .++++.|+.|-.|.-..+ ...++.+++
T Consensus 37 ii~vg~~~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p 115 (286)
T PRK14175 37 VILVGNDGASQSYVR-SKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP 115 (286)
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 34455 444443222 234678999999887777652 566677766 578899999999964322 112222222
Q ss_pred hHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG 321 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~ 321 (454)
. +.+-..+..- -|+++ | .-.--.|++..|+. .+.+++||+|+|+|.|+ +|+.++..
T Consensus 116 ~-KDVDGl~~~n----~g~l~~~~~~~~PcTp~ai~~ll~~-------------~~i~l~Gk~vvVIGrs~~VG~pla~l 177 (286)
T PRK14175 116 E-KDVDGFHPIN----IGKLYIDEQTFVPCTPLGIMEILKH-------------ADIDLEGKNAVVIGRSHIVGQPVSKL 177 (286)
T ss_pred c-cCcccCCccc----hHhHhcCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence 1 1111122110 01221 1 11234456665543 23679999999999998 99999999
Q ss_pred HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866 322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
|...|+.|+++++.... +.+ ...++|+||+|++. |. .+..++++++.+|+|+..+
T Consensus 178 L~~~gatVtv~~s~t~~-----------------l~~-~~~~ADIVIsAvg~---p~----~i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 178 LLQKNASVTILHSRSKD-----------------MAS-YLKDADVIVSAVGK---PG----LVTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred HHHCCCeEEEEeCCchh-----------------HHH-HHhhCCEEEECCCC---Cc----ccCHHHcCCCcEEEEcCCC
Confidence 99999999999985321 112 34678999999975 22 4778899999999999988
Q ss_pred CC-------CCHHHHHHHHC-CC-c-eeccH-----HHHHHHHHHHHH
Q 012866 402 PR-------KTRLLKDAEAA-GA-I-IVSGV-----EMFLRQAIGQFN 434 (454)
Q Consensus 402 P~-------~T~ll~~A~~~-G~-~-~~~Gl-----~mlv~Qa~~~f~ 434 (454)
|. +..+ ..+++. ++ . +-+|. -||+.+.+.+.+
T Consensus 233 ~~~~gkl~GDvd~-~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~ 279 (286)
T PRK14175 233 PDENGKLKGDVDY-DAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEK 279 (286)
T ss_pred cCCCCCeecCccH-HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 72 2332 333333 22 2 33444 377777776654
No 37
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.72 E-value=5.1e-08 Score=97.57 Aligned_cols=136 Identities=20% Similarity=0.208 Sum_probs=92.1
Q ss_pred CeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHH
Q 012866 265 GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSL 342 (454)
Q Consensus 265 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~l 342 (454)
+.+.+.-|=..+.+.. +.|. ....++++|||+|++|++++.++.. .+. +|+|+||++++++++
T Consensus 102 ~~lT~~RTaa~sala~--~~La-------------~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 102 TELTARRTAAASALAA--SYLA-------------RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred cchhcchhHHHHHHHH--HHhC-------------CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 3566777766665443 1132 2346899999999999999987775 566 899999999999999
Q ss_pred HHHhcC---CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC--CCCHHHHHHHHCCCc
Q 012866 343 ASDVMG---AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP--RKTRLLKDAEAAGAI 417 (454)
Q Consensus 343 a~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P--~~T~ll~~A~~~G~~ 417 (454)
++++.. .....++..+ .+.++|+||+||+.. .| .+..++++++. ++|+++.. ....+-.+..+++..
T Consensus 167 a~~~~~~g~~~~~~~~~~~-av~~aDIVi~aT~s~-~p-----vl~~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~ 238 (314)
T PRK06141 167 AAELRAQGFDAEVVTDLEA-AVRQADIISCATLST-EP-----LVRGEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASV 238 (314)
T ss_pred HHHHHhcCCceEEeCCHHH-HHhcCCEEEEeeCCC-CC-----EecHHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcE
Confidence 998742 1222334443 456899999999954 12 26678888887 78888752 222222344455556
Q ss_pred eeccHH
Q 012866 418 IVSGVE 423 (454)
Q Consensus 418 ~~~Gl~ 423 (454)
+++=.+
T Consensus 239 ~vD~~~ 244 (314)
T PRK06141 239 YVDTRA 244 (314)
T ss_pred EEcCHH
Confidence 666554
No 38
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.66 E-value=5.1e-08 Score=98.98 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=93.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC--c--ccccc---ccccCCCCccEEEECCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA--A--RPFED---ILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~--~--~~~~~---l~~~~~~~~divInat~~g~ 375 (454)
+++||||+|+.|++++.-|++.|- +|+|.+||.+++.+++...+.+ + ++..+ +.+ .+.+.|+|||+.|.-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~-li~~~d~VIn~~p~~~ 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVA-LIKDFDLVINAAPPFV 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHH-HHhcCCEEEEeCCchh
Confidence 579999999999999999999995 9999999999999997775322 2 22222 333 4667799999998421
Q ss_pred CCCCCCCCCChhcccCCcEEEEEecCCCC-CHHHHHHHHCCCceeccHH-------HHHHHHHHHHH
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVSGVE-------MFLRQAIGQFN 434 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll~~A~~~G~~~~~Gl~-------mlv~Qa~~~f~ 434 (454)
+ ..+.+.+++.+.-++|++|.+.. -.+-.+|++.|..++.|.+ .++.+++.+|.
T Consensus 81 ----~-~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~ 142 (389)
T COG1748 81 ----D-LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF 142 (389)
T ss_pred ----h-HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh
Confidence 1 12445678888889999998654 4456688899988775544 66777777765
No 39
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.63 E-value=3.9e-08 Score=98.28 Aligned_cols=98 Identities=26% Similarity=0.438 Sum_probs=75.3
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 379 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~ 379 (454)
+.+++++|+|+|.+|+.++..|...|+ +|+++||+.+++++++++++....+++++.+ .+.++|+||.||+....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVi~at~~~~~--- 251 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLE-LLNEADVVISATGAPHY--- 251 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHH-HHhcCCEEEECCCCCch---
Confidence 678999999999999999999999887 8999999999999999999876555555554 45679999999986431
Q ss_pred CCCCCChhcc----cCCcEEEEEecCCCCC
Q 012866 380 DRVPVSEETL----RDYQLVFDAVYTPRKT 405 (454)
Q Consensus 380 ~~~~i~~~~l----~~~~~v~D~~y~P~~T 405 (454)
. .+....+ .++.+++|+. .|++.
T Consensus 252 -~-~~~~~~~~~~~~~~~~viDla-vPrdi 278 (311)
T cd05213 252 -A-KIVERAMKKRSGKPRLIVDLA-VPRDI 278 (311)
T ss_pred -H-HHHHHHHhhCCCCCeEEEEeC-CCCCC
Confidence 0 0111111 2457999999 67654
No 40
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.59 E-value=2.4e-06 Score=84.14 Aligned_cols=203 Identities=15% Similarity=0.187 Sum_probs=128.2
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-++.+++|++..-..++- +++.+.++.| .++.+.|+.|-+|.-..+ ...++.++|. +.+-..+..- -|
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 129 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL-KDVDGFHSEN----VG 129 (301)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch-hccCccChhh----hh
Confidence 467899999987777754 2577777777 578899999999964211 1111111111 1111111110 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .|. -.--.|+++.|+. .+.+++||+++|||.| -+|+.++..|.+.|+.|++++|+....
T Consensus 130 ~l~~~~~~~~PcTp~aii~lL~~-------------~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l 196 (301)
T PRK14194 130 GLSQGRDVLTPCTPSGCLRLLED-------------TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDA 196 (301)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHH-------------hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCH
Confidence 11 111 1225566666554 2468999999999996 889999999999999999998864322
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC----------CCHHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR----------KTRLLK 409 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~----------~T~ll~ 409 (454)
++ ...++|+||.+++.. ..+..++++++.+|+|+..++. +-.|-.
T Consensus 197 ~e------------------~~~~ADIVIsavg~~-------~~v~~~~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~ 251 (301)
T PRK14194 197 KA------------------LCRQADIVVAAVGRP-------RLIDADWLKPGAVVIDVGINRIDDDGRSRLVGDVDFDS 251 (301)
T ss_pred HH------------------HHhcCCEEEEecCCh-------hcccHhhccCCcEEEEecccccCCCCCcceecccchHH
Confidence 21 234689999888642 2366788999999999987752 123322
Q ss_pred HHHHCCCc--eeccHH-----HHHHHHHHHHHHhcC
Q 012866 410 DAEAAGAI--IVSGVE-----MFLRQAIGQFNLFTG 438 (454)
Q Consensus 410 ~A~~~G~~--~~~Gl~-----mlv~Qa~~~f~lw~g 438 (454)
..+..++. +-+|.+ ||+...+.+.+.|.-
T Consensus 252 ~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~ 287 (301)
T PRK14194 252 ALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH 287 (301)
T ss_pred HHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 23334433 234654 888888888887764
No 41
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.55 E-value=1.3e-06 Score=81.66 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc
Q 012866 274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353 (454)
Q Consensus 274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~ 353 (454)
+.|...+++..+... ..+.+++|++++|+|.|.+|+.++..|.+.|++|++++++.++.+++++.++...++.
T Consensus 6 g~Gv~~~~~~~~~~~-------~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~ 78 (200)
T cd01075 6 AYGVFLGMKAAAEHL-------LGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP 78 (200)
T ss_pred HHHHHHHHHHHHHHh-------cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc
Confidence 567777777665521 0135789999999999999999999999999999999999999999988876554444
Q ss_pred ccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCC-HHHHHHHHCCCceeccHHHHHHHHH
Q 012866 354 EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKT-RLLKDAEAAGAIIVSGVEMFLRQAI 430 (454)
Q Consensus 354 ~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T-~ll~~A~~~G~~~~~Gl~mlv~Qa~ 430 (454)
+++.. .++|++++|+.-+. +..+.++ +..++++-.-+|... .--+.-+++|+.+++..-....-.+
T Consensus 79 ~~l~~---~~~Dv~vp~A~~~~--------I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~ 147 (200)
T cd01075 79 EEIYS---VDADVFAPCALGGV--------INDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLI 147 (200)
T ss_pred hhhcc---ccCCEEEecccccc--------cCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCcCce
Confidence 44322 36899998876432 3333322 346788888777642 3334445789887763322222233
Q ss_pred HHHHHhcCC
Q 012866 431 GQFNLFTGK 439 (454)
Q Consensus 431 ~~f~lw~g~ 439 (454)
..+-.|.|.
T Consensus 148 ~~~~e~~~~ 156 (200)
T cd01075 148 NVADELYGG 156 (200)
T ss_pred eehhHHhCC
Confidence 344555553
No 42
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.52 E-value=6.3e-07 Score=81.36 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=63.6
Q ss_pred CCCCCceEEEEccchh-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~-arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
.++++++++|+|+|++ |+.++..|.+.|++|+++||+.+.. .+ .+.++|+||+||+..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l-----------------~~-~l~~aDiVIsat~~~--- 98 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNL-----------------KE-HTKQADIVIVAVGKP--- 98 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhH-----------------HH-HHhhCCEEEEcCCCC---
Confidence 4689999999999996 8889999999999999999985322 22 346789999999863
Q ss_pred CCCCCCCChhcccCCcEEEEEecC
Q 012866 378 NTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
+ .+..+.++++.+++|+.-.
T Consensus 99 ~----ii~~~~~~~~~viIDla~p 118 (168)
T cd01080 99 G----LVKGDMVKPGAVVIDVGIN 118 (168)
T ss_pred c----eecHHHccCCeEEEEccCC
Confidence 1 4777888888999999853
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.49 E-value=4.6e-06 Score=81.55 Aligned_cols=202 Identities=16% Similarity=0.253 Sum_probs=127.7
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++. +++.+.++.+ .+++..|+.|-+|+...+ ...++.+++. +.+-..+-. + -|
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~-n---~g 129 (285)
T PRK10792 55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD-KDVDGFHPY-N---VG 129 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCccChh-h---Hh
Confidence 467899999988777753 3677777777 577899999999975321 1111111111 111111100 0 01
Q ss_pred eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .| .----.|++..|+. .+.+++||+++|+|-|. .|+.++.-|...|+.|+++.+...
T Consensus 130 ~l~~~~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~-- 194 (285)
T PRK10792 130 RLAQRIPLLRPCTPRGIMTLLER-------------YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK-- 194 (285)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--
Confidence 11 11 11234566666543 24678999999999997 799999999999999999987522
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-------CCHHHHHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE 412 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-------~T~ll~~A~ 412 (454)
++.+ ...++|+||+|++. |. .+..++++++.+|+|+-.++. +..| +.++
T Consensus 195 ---------------~l~~-~~~~ADIvi~avG~---p~----~v~~~~vk~gavVIDvGin~~~~gk~~GDvd~-~~~~ 250 (285)
T PRK10792 195 ---------------NLRH-HVRNADLLVVAVGK---PG----FIPGEWIKPGAIVIDVGINRLEDGKLVGDVEF-ETAA 250 (285)
T ss_pred ---------------CHHH-HHhhCCEEEEcCCC---cc----cccHHHcCCCcEEEEcccccccCCCcCCCcCH-HHHH
Confidence 2222 34678999999853 22 477899999999999987752 2333 2333
Q ss_pred HC-CC-c-eecc-----HHHHHHHHHHHHHHhcC
Q 012866 413 AA-GA-I-IVSG-----VEMFLRQAIGQFNLFTG 438 (454)
Q Consensus 413 ~~-G~-~-~~~G-----l~mlv~Qa~~~f~lw~g 438 (454)
+. .+ . +-+| .-||+...+.+.+.|..
T Consensus 251 ~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~ 284 (285)
T PRK10792 251 ERASWITPVPGGVGPMTVATLLENTLQACEEYHD 284 (285)
T ss_pred hhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 32 22 2 2233 34888888888877753
No 44
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.47 E-value=4.3e-07 Score=91.39 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCceEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~-~~G~-~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~ 375 (454)
..++++|+|+|++|++.+.++. ..++ +|.|+||++++++++++++.. ....++++++ .+.++|+||+|||.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~aDiVi~aT~s~- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADE-AIEEADIIVTVTNAK- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEccCCC-
Confidence 4678999999999999998876 4688 999999999999999987632 2223455544 457899999999975
Q ss_pred CCCCCCCCCChhcccCCcEEEEE
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDA 398 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~ 398 (454)
.| .+. ++++++..|.-+
T Consensus 204 ~p-----~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 204 TP-----VFS-EKLKKGVHINAV 220 (325)
T ss_pred Cc-----chH-HhcCCCcEEEec
Confidence 23 367 889888877655
No 45
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.46 E-value=5.7e-07 Score=92.02 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCC-CC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPL-GM 375 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~~~~~~~~divInat~~-g~ 375 (454)
+.+++|+|+|+|++|+.++..|..+|++|++++|+.++++.++..++... .+.+++.+ .+.++|+||||++. |.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~-~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIED-AVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHH-HHccCCEEEEccccCCC
Confidence 45678999999999999999999999999999999999998888776421 12233444 45679999999865 32
Q ss_pred CCCCCCCCCChhc---ccCCcEEEEEecCCC
Q 012866 376 HPNTDRVPVSEET---LRDYQLVFDAVYTPR 403 (454)
Q Consensus 376 ~p~~~~~~i~~~~---l~~~~~v~D~~y~P~ 403 (454)
. .+..+..+. ++++.+++|+.+.|.
T Consensus 244 ~---~p~lit~~~l~~mk~g~vIvDva~d~G 271 (370)
T TIGR00518 244 K---APKLVSNSLVAQMKPGAVIVDVAIDQG 271 (370)
T ss_pred C---CCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence 1 111244443 567899999998765
No 46
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.43 E-value=2e-06 Score=85.72 Aligned_cols=96 Identities=21% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~~~~--~~~l~~~~~~~~divInat~~g~~ 376 (454)
...++++|+|+|++|++.+.++.. .+. +|.|+||+.++++++++++...... .+++++ .+.++|+||+|||...
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~-av~~aDiVitaT~s~~- 200 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEA-IPEAVDLVVTATTSRT- 200 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHH-HhhcCCEEEEccCCCC-
Confidence 346899999999999999999975 677 8999999999999999988532111 234444 4578999999999642
Q ss_pred CCCCCCCCChhcccCCcEEEEE-ecCCCC
Q 012866 377 PNTDRVPVSEETLRDYQLVFDA-VYTPRK 404 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~-~y~P~~ 404 (454)
|. +. .+++++..+.=+ .|.|..
T Consensus 201 Pl-----~~-~~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 PV-----YP-EAARAGRLVVAVGAFTPDM 223 (304)
T ss_pred ce-----eC-ccCCCCCEEEecCCCCCCc
Confidence 22 33 367777655555 344543
No 47
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.39 E-value=9.8e-06 Score=79.27 Aligned_cols=202 Identities=17% Similarity=0.236 Sum_probs=124.6
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++- +++.+.++.| .++.+.|+.|-.|+-..+ ...++.++|. +.+-..+-. +-|
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~-KDVDGl~~~----N~g 128 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK-KDVDGFHPM----NTG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-ccccccCHh----hHH
Confidence 468899999988777764 3577777777 577899999999974322 1111111111 111101000 001
Q ss_pred eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
+++ | .----.|++..|+. .+.+++||+++|||. |-+|+.++..|.+.|+.|+++.....
T Consensus 129 ~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~-- 193 (284)
T PRK14179 129 HLWSGRPVMIPCTPAGIMEMFRE-------------YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR-- 193 (284)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--
Confidence 111 0 01234556665543 246799999999998 78899999999999999999842211
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-------CCHHHHHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE 412 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-------~T~ll~~A~ 412 (454)
++.+ ...++|+||.+++. | ..+..++++++.+|+|+..++. +-.|-...+
T Consensus 194 ---------------~l~~-~~~~ADIVI~avg~---~----~~v~~~~ik~GavVIDvgin~~~~gkl~GDVdf~~v~~ 250 (284)
T PRK14179 194 ---------------NLAE-VARKADILVVAIGR---G----HFVTKEFVKEGAVVIDVGMNRDENGKLIGDVDFDEVAE 250 (284)
T ss_pred ---------------CHHH-HHhhCCEEEEecCc---c----ccCCHHHccCCcEEEEecceecCCCCeecCccHHHHHh
Confidence 1222 24568999988863 2 2477789999999999988762 122222222
Q ss_pred HCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866 413 AAGA--IIVSGVE-----MFLRQAIGQFNLFT 437 (454)
Q Consensus 413 ~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~ 437 (454)
..++ ++-+|.+ ||+...+.+.+.|.
T Consensus 251 ~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 282 (284)
T PRK14179 251 VASYITPVPGGVGPMTITMLMEQTYQAALRSL 282 (284)
T ss_pred hccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 2333 2334544 88888888877775
No 48
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.37 E-value=3.8e-06 Score=67.54 Aligned_cols=80 Identities=31% Similarity=0.491 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcc
Q 012866 273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAAR 351 (454)
Q Consensus 273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~ 351 (454)
.+.|.+..|++... ..+..+++++++|+|+|++|+.++..|.+.|. +|++++|
T Consensus 2 t~~~~~~~l~~~~~---------~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r----------------- 55 (86)
T cd05191 2 TAAGAVALLKAAGK---------VTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----------------- 55 (86)
T ss_pred hhHHHHHHHHHHHH---------HhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------
Confidence 35677777776543 12356789999999999999999999999965 9999998
Q ss_pred ccccccccCCCCccEEEECCCCCCCCCCCCCCCCh---hcccCCcEEEEE
Q 012866 352 PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDA 398 (454)
Q Consensus 352 ~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~---~~l~~~~~v~D~ 398 (454)
|++|+||+.+. ++.+ +.+.++.+++|+
T Consensus 56 -------------di~i~~~~~~~-------~~~~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 56 -------------DILVTATPAGV-------PVLEEATAKINEGAVVIDL 85 (86)
T ss_pred -------------CEEEEcCCCCC-------CchHHHHHhcCCCCEEEec
Confidence 89999998643 2333 456778899986
No 49
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.36 E-value=5.5e-06 Score=81.05 Aligned_cols=202 Identities=18% Similarity=0.261 Sum_probs=125.6
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+.++++|++.....++- +++.+.++.+ .+.++.|+.|-.|.-..+ ...++.+++. +.+-..+.. + -|
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g 128 (285)
T PRK14189 54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE-KDVDGFHVA-N---AG 128 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChh-h---hh
Confidence 467899999988777764 3577777777 577899999999974211 1111111111 111111110 0 01
Q ss_pred eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-HHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~-arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
+++ |. =.--.|+++.|+. .+.+++||+|+|+|.|+. |+.++.-|...|+.|+++.+...
T Consensus 129 ~l~~~~~~~~PcTp~aii~lL~~-------------~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~-- 193 (285)
T PRK14189 129 ALMTGQPLFRPCTPYGVMKMLES-------------IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR-- 193 (285)
T ss_pred HhhCCCCCCcCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--
Confidence 111 11 1224566666543 246799999999999988 99999999999999998865321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-C------CHHHHHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-K------TRLLKDAE 412 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-~------T~ll~~A~ 412 (454)
++.+ ...++|+||.|++. |. .+..++++++.+|+|+-.++. + ..+-...+
T Consensus 194 ---------------~l~~-~~~~ADIVV~avG~---~~----~i~~~~ik~gavVIDVGin~~~~gkl~GDVd~~~v~~ 250 (285)
T PRK14189 194 ---------------DLAA-HTRQADIVVAAVGK---RN----VLTADMVKPGATVIDVGMNRDDAGKLCGDVDFAGVKE 250 (285)
T ss_pred ---------------CHHH-HhhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEccccccCCCCeeCCccHHHHHh
Confidence 2222 35679999998873 32 478899999999999988763 1 12212222
Q ss_pred HCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866 413 AAGA--IIVSGVE-----MFLRQAIGQFNLFT 437 (454)
Q Consensus 413 ~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~ 437 (454)
..++ ++-+|.+ ||+.+.+.+.+-+.
T Consensus 251 ~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~ 282 (285)
T PRK14189 251 VAGYITPVPGGVGPMTITMLLVNTIEAAERAA 282 (285)
T ss_pred hceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 2333 2334544 77777776665443
No 50
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=2.9e-06 Score=83.62 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=106.4
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+.++++|++..-..++- +++.+.++.+ .++++.|+.|-.|+-..+ ...++.+++. +.+-..+.+ + -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~-KDVDGl~~~-n---~g 128 (296)
T PRK14188 54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE-KDVDGLHVV-N---AG 128 (296)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc-cccccCChh-h---HH
Confidence 457899999976555543 3577777777 578899999999974221 1111111111 111111110 0 01
Q ss_pred eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEc-cchhHHHHHHHHHHCCCeEEEE-eCCHHH
Q 012866 266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIF-DIDFER 338 (454)
Q Consensus 266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViG-aGG~arai~~~L~~~G~~v~i~-nRt~~~ 338 (454)
++. |. ----.|+++.|+. .+.+++||+|+|+| .|-+|+.++..|.+.|+.|+++ +||.+-
T Consensus 129 ~l~~~~~~~~PcTp~ai~~ll~~-------------~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l 195 (296)
T PRK14188 129 RLATGETALVPCTPLGCMMLLRR-------------VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL 195 (296)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH
Confidence 110 10 1125566666543 13678999999999 8899999999999999999999 587521
Q ss_pred HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
.+ ...++|+||.+++.. ..+...+++++.+|+|+-.+.
T Consensus 196 ------------------~e-~~~~ADIVIsavg~~-------~~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 196 ------------------PA-VCRRADILVAAVGRP-------EMVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred ------------------HH-HHhcCCEEEEecCCh-------hhcchheecCCCEEEEcCCcc
Confidence 11 234689999888642 136677899999999998775
No 51
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.31 E-value=2.4e-06 Score=85.85 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=79.9
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcC-CccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMG-AARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~-~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+++++|+|+|| |.+|+.++..|.. .|+ +|+++||+.++++.++.++.. ... ++.+ .+.++|+||.+|+..
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~---~l~~-~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL---SLEE-ALPEADIVVWVASMP 226 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH---hHHH-HHccCCEEEECCcCC
Confidence 4688999999998 7899999999985 477 999999999999999988752 222 3333 456799999999763
Q ss_pred CCCCCCCCCCChhcccCCcEEEEEecCCCC-CHHHHHHHHCCCceec
Q 012866 375 MHPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVS 420 (454)
Q Consensus 375 ~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll~~A~~~G~~~~~ 420 (454)
. ...+.++.+.+..+++|+.+ |++ -|-. .+-|..+++
T Consensus 227 ~-----~~~I~~~~l~~~~~viDiAv-PRDVd~~v---~~~~V~v~~ 264 (340)
T PRK14982 227 K-----GVEIDPETLKKPCLMIDGGY-PKNLDTKV---QGPGIHVLK 264 (340)
T ss_pred c-----CCcCCHHHhCCCeEEEEecC-CCCCCccc---CCCCEEEEe
Confidence 2 11256677788899999997 553 2211 225666644
No 52
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=3.1e-05 Score=75.83 Aligned_cols=203 Identities=14% Similarity=0.263 Sum_probs=127.0
Q ss_pred HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++-+ ++.+.++.+ .+.+..|+.|-+|....+ ...++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE-KDVDGFHPIN----VG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccCHhh----HH
Confidence 4678999999887777643 677777777 577899999999975321 1112111111 1111111100 01
Q ss_pred eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .| .----.|+++.|+. .+.+++||+|+|+|.+ -.|+.++.-|...|+.|+++......
T Consensus 129 ~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~- 194 (284)
T PRK14190 129 RMMLGQDTFLPCTPHGILELLKE-------------YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKN- 194 (284)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchh-
Confidence 11 11 01234455565543 2467999999999977 55999999999999999998643221
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-------CHHHHHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-------TRLLKDAE 412 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-------T~ll~~A~ 412 (454)
+.+ ...++|+||.|++. |. .+..++++++.+|+|+-.+... -.+ +.++
T Consensus 195 ----------------l~~-~~~~ADIvI~AvG~---p~----~i~~~~ik~gavVIDvGi~~~~~gkl~GDvd~-e~v~ 249 (284)
T PRK14190 195 ----------------LAE-LTKQADILIVAVGK---PK----LITADMVKEGAVVIDVGVNRLENGKLCGDVDF-DNVK 249 (284)
T ss_pred ----------------HHH-HHHhCCEEEEecCC---CC----cCCHHHcCCCCEEEEeeccccCCCCeeccCcH-HHHh
Confidence 112 24568999998853 22 4888999999999999877521 233 3333
Q ss_pred H-CCC--ceeccHH-----HHHHHHHHHHHHhcCC
Q 012866 413 A-AGA--IIVSGVE-----MFLRQAIGQFNLFTGK 439 (454)
Q Consensus 413 ~-~G~--~~~~Gl~-----mlv~Qa~~~f~lw~g~ 439 (454)
+ .++ ++-+|.+ ||+...+.+.+.|.|+
T Consensus 250 ~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 284 (284)
T PRK14190 250 EKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR 284 (284)
T ss_pred hhceEecCCCCCChHHHHHHHHHHHHHHHHHhhcC
Confidence 3 333 2334544 8888888888777653
No 53
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=1.1e-05 Score=78.99 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=115.8
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP 247 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 247 (454)
.-++| +|-+.+.- ..--+.++++|++.....++-+ ++...++.| .+.++.|+.|-+|+...+ ...++.++|
T Consensus 43 ii~vg~d~aS~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p 121 (287)
T PRK14176 43 TILVGDDPASKMYV-RLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP 121 (287)
T ss_pred EEEECCCcchHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence 44566 34333322 2334678999999887777642 577777777 578899999999975322 111211111
Q ss_pred hHhHccceeEEEEeCCCCeEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG 321 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~ 321 (454)
. +.+-..+-. +-|+++ |. ----.|++..|+. .+.+++||+|+|+|-|. .|+.++..
T Consensus 122 ~-KDVDGl~~~----N~g~l~~g~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~vvViGrs~iVGkPla~l 183 (287)
T PRK14176 122 A-KDADGFHPY----NMGKLMIGDEGLVPCTPHGVIRALEE-------------YGVDIEGKNAVIVGHSNVVGKPMAAM 183 (287)
T ss_pred c-ccccccChh----hhhhHhcCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCCcccHHHHHHH
Confidence 1 111111100 001111 11 1234566666543 24678999999999997 79999999
Q ss_pred HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866 322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
|...|+.|+++..... ++.+ ...++|+||+|+.. |. .+..++++++.+|+|+-.+
T Consensus 184 L~~~~atVtv~hs~T~-----------------~l~~-~~~~ADIvv~AvG~---p~----~i~~~~vk~gavVIDvGin 238 (287)
T PRK14176 184 LLNRNATVSVCHVFTD-----------------DLKK-YTLDADILVVATGV---KH----LIKADMVKEGAVIFDVGIT 238 (287)
T ss_pred HHHCCCEEEEEeccCC-----------------CHHH-HHhhCCEEEEccCC---cc----ccCHHHcCCCcEEEEeccc
Confidence 9999999999985321 2222 34678999998864 32 4788999999999999876
Q ss_pred C
Q 012866 402 P 402 (454)
Q Consensus 402 P 402 (454)
.
T Consensus 239 ~ 239 (287)
T PRK14176 239 K 239 (287)
T ss_pred c
Confidence 4
No 54
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=3e-05 Score=75.70 Aligned_cols=202 Identities=17% Similarity=0.223 Sum_probs=126.2
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.++++++|++.....++- +++.+.++.+ .++++.|+.|-.|....+ ...++.++|. +.+-..+.. + -|
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g 126 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA-KDADGFHPF-N---VG 126 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcCCCCHh-H---HH
Confidence 467899999988777754 2577777777 578899999999975321 1111111111 111111110 0 01
Q ss_pred eEE-E-----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 266 KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 266 ~l~-G-----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
+++ | .-.--.|+++.|+. .+.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++.....
T Consensus 127 ~l~~g~~~~~~PcTp~avi~ll~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~- 192 (282)
T PRK14182 127 ALSIGIAGVPRPCTPAGVMRMLDE-------------ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA- 192 (282)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-
Confidence 111 1 11225667776654 2467899999999977 5599999999999999999875421
Q ss_pred HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-------CCHHHHHH
Q 012866 339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDA 411 (454)
Q Consensus 339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-------~T~ll~~A 411 (454)
++.+ ...++|+||.|++. |. .+..++++++.+|+|+-.+.. +..|-...
T Consensus 193 ----------------nl~~-~~~~ADIvI~AvGk---~~----~i~~~~ik~gaiVIDvGin~~~~gkl~GDVd~~~v~ 248 (282)
T PRK14182 193 ----------------DLAG-EVGRADILVAAIGK---AE----LVKGAWVKEGAVVIDVGMNRLADGKLVGDVEFAAAA 248 (282)
T ss_pred ----------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEeeceecCCCCeeCCCCHHHHH
Confidence 1222 34578999988853 32 588999999999999987752 12222222
Q ss_pred HHCCCc--eeccHH-----HHHHHHHHHHHHhc
Q 012866 412 EAAGAI--IVSGVE-----MFLRQAIGQFNLFT 437 (454)
Q Consensus 412 ~~~G~~--~~~Gl~-----mlv~Qa~~~f~lw~ 437 (454)
+..++. +-+|.+ ||+.+.+.+.+.|.
T Consensus 249 ~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~ 281 (282)
T PRK14182 249 ARASAITPVPGGVGPMTRAMLLVNTVELAKRTA 281 (282)
T ss_pred hhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 333432 334544 88888877766653
No 55
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=4.9e-05 Score=74.29 Aligned_cols=167 Identities=15% Similarity=0.227 Sum_probs=109.0
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+.++++|++.....++. +++.+.++.+ .+++..|+.|-+|+...+ ...++.++|. +.+-..+-. +-|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~----n~g 127 (282)
T PRK14180 53 EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE-KDVDGFHPT----NVG 127 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc-ccccccChh----hHH
Confidence 357899999988777765 3577777777 678899999999975322 1122222211 111111110 001
Q ss_pred eE-EEe-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 266 KL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 266 ~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
++ .|. -.--.|++.-|+. .+.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++.+...
T Consensus 128 ~l~~g~~~~~~PcTp~aii~lL~~-------------y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~- 193 (282)
T PRK14180 128 RLQLRDKKCLESCTPKGIMTMLRE-------------YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT- 193 (282)
T ss_pred HHhcCCCCCcCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC-
Confidence 22 221 1234566666553 2467999999999987 5599999999999999999975421
Q ss_pred HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
++.+ ..+++|+||.|++. |. .+..++++++.+|+|+-.+.
T Consensus 194 ----------------dl~~-~~k~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 194 ----------------DLKS-HTTKADILIVAVGK---PN----FITADMVKEGAVVIDVGINH 233 (282)
T ss_pred ----------------CHHH-HhhhcCEEEEccCC---cC----cCCHHHcCCCcEEEEecccc
Confidence 2222 34678999988863 22 47889999999999998765
No 56
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.21 E-value=4.6e-06 Score=83.51 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=61.1
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcccccccc----ccCCCCccEEEECCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDIL----NFQPEKGAILANATPLG 374 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~----~~~~~~~divInat~~g 374 (454)
++.++++||||+|.||+.++.+|.+.|+ +|+|+|||.++ . +++++. + ...++|+||.||+..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~-----------~~~~~~~~~~~-~~~~~DvVIs~t~~T 237 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-L-----------PYRTVVREELS-FQDPYDVIFFGSSES 237 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-c-----------chhhhhhhhhh-cccCCCEEEEcCCcC
Confidence 4789999999999999999999999998 89999999753 1 122211 1 235789999986432
Q ss_pred CCCCCCCCCCChhccc--CCcEEEEEecCCCCCH
Q 012866 375 MHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTR 406 (454)
Q Consensus 375 ~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~ 406 (454)
..|.. .+..+.+. ...+++|+. .|++.+
T Consensus 238 as~~p---~i~~~~~~~~~~r~~iDLA-vPRdId 267 (338)
T PRK00676 238 AYAFP---HLSWESLADIPDRIVFDFN-VPRTFP 267 (338)
T ss_pred CCCCc---eeeHHHHhhccCcEEEEec-CCCCCc
Confidence 22321 12223222 125899998 477653
No 57
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=6.4e-05 Score=73.60 Aligned_cols=167 Identities=15% Similarity=0.220 Sum_probs=108.2
Q ss_pred HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++-+ ++...++.+ .++.+.|+.|-+|+...+ ...++.++|. +.+-..+..- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN-KDVDGFHPLN----IG 127 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChhh----HH
Confidence 4678999999877777642 577777777 578899999999975211 1111111111 1111111100 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .|. ----.|+++.|+. .+.+++||+|+|+|.| -.|+.++..|.+.|+.|+++.....
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~-- 192 (285)
T PRK14191 128 KLCSQLDGFVPATPMGVMRLLKH-------------YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK-- 192 (285)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHH-------------hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH--
Confidence 11 111 1234556665543 2467899999999998 7799999999999999999864321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
.+. + ...++|+||.|++. | ..+..++++++.+|+|+-.++
T Consensus 193 -~l~--------------~-~~~~ADIvV~AvG~---p----~~i~~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 193 -DLS--------------F-YTQNADIVCVGVGK---P----DLIKASMVKKGAVVVDIGINR 232 (285)
T ss_pred -HHH--------------H-HHHhCCEEEEecCC---C----CcCCHHHcCCCcEEEEeeccc
Confidence 121 1 24568999998853 2 247889999999999998765
No 58
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=0.00014 Score=71.05 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=129.0
Q ss_pred EEEecC-CCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCH
Q 012866 176 FGLISK-PVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP 247 (454)
Q Consensus 176 ~~liG~-pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 247 (454)
.-++|+ |-+++ --..-.+.++++|++.....++-+ ++...++.+ .++++.|+.|-.|+...+ ...++.++|
T Consensus 35 ii~vg~d~as~~-Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p 113 (282)
T PRK14169 35 VVLVGSDPASEV-YVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP 113 (282)
T ss_pred EEEeCCChhHHH-HHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc
Confidence 445553 33332 222335688999999887777653 577777777 578899999999975322 112222221
Q ss_pred hHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFG 321 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~ 321 (454)
. +.+-..+..- -|+++ | .-.--.|++..|+. .+.+++||+++|||-+ -.|+.++.-
T Consensus 114 ~-KDVDGl~~~N----~g~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~l 175 (282)
T PRK14169 114 D-KDVDGFSPVS----VGRLWANEPTVVASTPYGIMALLDA-------------YDIDVAGKRVVIVGRSNIVGRPLAGL 175 (282)
T ss_pred c-cCcccCChhh----hHHHhcCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence 1 1111111100 01111 1 11234566665543 2467999999999977 559999999
Q ss_pred HHHCCCeEEEEe-CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec
Q 012866 322 AKSRGARVVIFD-IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY 400 (454)
Q Consensus 322 L~~~G~~v~i~n-Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y 400 (454)
|...|+.|+++. ||.+ +.+ ...++|+||.|++. |. .+..++++++.+|+|+-.
T Consensus 176 L~~~~atVtichs~T~~------------------l~~-~~~~ADIvI~AvG~---p~----~i~~~~vk~GavVIDvGi 229 (282)
T PRK14169 176 MVNHDATVTIAHSKTRN------------------LKQ-LTKEADILVVAVGV---PH----FIGADAVKPGAVVIDVGI 229 (282)
T ss_pred HHHCCCEEEEECCCCCC------------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCcEEEEeec
Confidence 999999999995 4421 212 24568999988864 22 478899999999999988
Q ss_pred CCC-------CCHHHHHHHHCCC--ceeccH-----HHHHHHHHHHHH
Q 012866 401 TPR-------KTRLLKDAEAAGA--IIVSGV-----EMFLRQAIGQFN 434 (454)
Q Consensus 401 ~P~-------~T~ll~~A~~~G~--~~~~Gl-----~mlv~Qa~~~f~ 434 (454)
++. +-.+-...+..++ ++-+|. -||+...+.+.+
T Consensus 230 n~~~~gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 277 (282)
T PRK14169 230 SRGADGKLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAK 277 (282)
T ss_pred cccCCCCeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHH
Confidence 762 2223222233343 233464 477776665543
No 59
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=9.3e-05 Score=72.24 Aligned_cols=214 Identities=16% Similarity=0.257 Sum_probs=129.3
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 247 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 247 (454)
.-++| +|-+++.-- .-.+..+++|++.....++-+ ++.+.++.| .++++.|+-|-.|.-..+- ..++.++|
T Consensus 31 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p 109 (279)
T PRK14178 31 TVIVGDDPASQMYVR-MKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILP 109 (279)
T ss_pred EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence 44555 344433222 224678999999887777653 677777777 6888999999999643221 11111111
Q ss_pred hHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFG 321 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~ 321 (454)
. +.+-..+.. + -|+++ | .----.|++..|+. .+.+++|++|+|+|-+ -.||.++..
T Consensus 110 ~-KDVDGl~~~-n---~g~l~~~~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~V~ViGrs~~vGrpla~l 171 (279)
T PRK14178 110 E-KDVDGFHPL-N---LGRLVSGLPGFAPCTPNGIMTLLHE-------------YKISIAGKRAVVVGRSIDVGRPMAAL 171 (279)
T ss_pred c-cCcccCChh-h---HHHHhCCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCccccHHHHHH
Confidence 1 111111110 0 01111 1 01234566666543 2467999999999988 779999999
Q ss_pred HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866 322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
|...|+.|+++.++....+ + ...++|+||+|++. | ..+..++++++.+|+|+..+
T Consensus 172 L~~~~atVtv~hs~t~~L~-----------------~-~~~~ADIvI~Avgk---~----~lv~~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 172 LLNADATVTICHSKTENLK-----------------A-ELRQADILVSAAGK---A----GFITPDMVKPGATVIDVGIN 226 (279)
T ss_pred HHhCCCeeEEEecChhHHH-----------------H-HHhhCCEEEECCCc---c----cccCHHHcCCCcEEEEeecc
Confidence 9999999999987643221 1 23568999999953 2 24788999999999999987
Q ss_pred C------CCCHHHHHHHHC-CC--ceeccH-----HHHHHHHHHHHH
Q 012866 402 P------RKTRLLKDAEAA-GA--IIVSGV-----EMFLRQAIGQFN 434 (454)
Q Consensus 402 P------~~T~ll~~A~~~-G~--~~~~Gl-----~mlv~Qa~~~f~ 434 (454)
. .+..| ..+++. ++ ++-+|. -||+...+.+.+
T Consensus 227 ~~~gkl~GDvdf-~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 272 (279)
T PRK14178 227 QVNGKLCGDVDF-DAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272 (279)
T ss_pred ccCCCCcCCccH-HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 23443 333333 32 123443 367666665543
No 60
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.18 E-value=2.6e-06 Score=96.40 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=93.9
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-e-------------EEEEeCCHHHHHHHHHHh-cCCcc--cc---ccccccCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-R-------------VVIFDIDFERAKSLASDV-MGAAR--PF---EDILNFQP 361 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~-------------v~i~nRt~~~a~~la~~~-~~~~~--~~---~~l~~~~~ 361 (454)
+.|+|+|||||.+|+.++..|++..- + |+|++++.++++++++.+ +..++ ++ +++.+ .+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~-~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK-YV 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH-hh
Confidence 46799999999999999999987543 4 999999999999999987 43222 22 33333 33
Q ss_pred CCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHH-------HHHHHHHHHH
Q 012866 362 EKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVE-------MFLRQAIGQF 433 (454)
Q Consensus 362 ~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~-------mlv~Qa~~~f 433 (454)
.++|+||+|+|..++. ++...++..+.-++|..|... ...+.++|+++|..+++|.. |+..+.+.++
T Consensus 647 ~~~DaVIsalP~~~H~-----~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~~ 721 (1042)
T PLN02819 647 SQVDVVISLLPASCHA-----VVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDDA 721 (1042)
T ss_pred cCCCEEEECCCchhhH-----HHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHhh
Confidence 5699999999976542 355667778888899998744 45677899999988776554 6666666654
No 61
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=7.5e-05 Score=73.01 Aligned_cols=201 Identities=18% Similarity=0.242 Sum_probs=122.8
Q ss_pred HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+..+++|++.....++-+ ++.+.++.| .++.+.|+.|-.|.-..+ ...++.+++. +.+-..+-+- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~N----~g 127 (284)
T PRK14170 53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD-KDVDGFHPVN----VG 127 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcccCChhh----hh
Confidence 4678999999877777642 566777777 578899999999964221 1111111111 1111111100 01
Q ss_pred eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
+++ |. ----.|++..|+. .+.+++||+|+|+|-+. .|+.++.-|.+.|+.|+++.....
T Consensus 128 ~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~-- 192 (284)
T PRK14170 128 NLFIGKDSFVPCTPAGIIELIKS-------------TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTK-- 192 (284)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--
Confidence 111 10 1125566666553 24689999999999874 599999999999999999865321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-C------CHHHHHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-K------TRLLKDAE 412 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-~------T~ll~~A~ 412 (454)
++.+ ...++||||.|++. |. .+..++++++.+|+|+-.+.. . -.|-...+
T Consensus 193 ---------------~l~~-~~~~ADIvI~AvG~---~~----~i~~~~vk~GavVIDvGin~~~~gkl~GDvdfe~~~~ 249 (284)
T PRK14170 193 ---------------DLPQ-VAKEADILVVATGL---AK----FVKKDYIKPGAIVIDVGMDRDENNKLCGDVDFDDVVE 249 (284)
T ss_pred ---------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccCcccCCCCeecccchHHHHh
Confidence 1222 34678999988864 22 478899999999999988752 1 22222222
Q ss_pred HCCC--ceeccHH-----HHHHHHHHHHHHh
Q 012866 413 AAGA--IIVSGVE-----MFLRQAIGQFNLF 436 (454)
Q Consensus 413 ~~G~--~~~~Gl~-----mlv~Qa~~~f~lw 436 (454)
..++ ++-+|.+ ||+...+.+.+.+
T Consensus 250 ~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~ 280 (284)
T PRK14170 250 EAGFITPVPGGVGPMTITMLLANTLKAAKRI 280 (284)
T ss_pred hccEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 2333 2334554 7777666665543
No 62
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.14 E-value=8.1e-05 Score=74.32 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=131.0
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 247 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 247 (454)
+-++| +|-+++.- ..-.++.+++|++..-..++-+ ++.+.++.+ .++++.|+.|-.|....+- ..++.+++
T Consensus 91 iIlvGddpaS~~Yv-~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p 169 (345)
T PLN02897 91 VVLVGQQRDSQTYV-RNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRL 169 (345)
T ss_pred EEEeCCChHHHHHH-HHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 45566 34433211 1224678999999876666542 577777777 6788999999999752111 11111111
Q ss_pred hHhHccceeEEEEeCCCCeE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA 319 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~ 319 (454)
. +.+-..+-+ +-|++ .|. ----.|+++.|+. .+.+++||+|+|||-+ -.|+.++
T Consensus 170 ~-KDVDGl~p~----N~G~L~~~~~~~~~~PCTp~avi~LL~~-------------~~i~l~GK~vvVIGRS~iVGkPla 231 (345)
T PLN02897 170 E-KDVDGFHPL----NVGNLAMRGREPLFVSCTPKGCVELLIR-------------SGVEIAGKNAVVIGRSNIVGLPMS 231 (345)
T ss_pred c-cCccCCCHH----HHHHHhcCCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccccHHHH
Confidence 0 111111100 00122 111 1224566666543 2467999999999977 5599999
Q ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866 320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
.-|.+.|+.|+++...... +.+ ...++||||.|++. |. .+..++++++.+|+|+-
T Consensus 232 ~LL~~~~ATVTicHs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~v~~d~vk~GavVIDVG 286 (345)
T PLN02897 232 LLLQRHDATVSTVHAFTKD-----------------PEQ-ITRKADIVIAAAGI---PN----LVRGSWLKPGAVVIDVG 286 (345)
T ss_pred HHHHHCCCEEEEEcCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEcc
Confidence 9999999999998753211 222 34678999988864 22 47889999999999998
Q ss_pred cCCCCC-------------HHHHHHHHCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866 400 YTPRKT-------------RLLKDAEAAGA--IIVSGVE-----MFLRQAIGQFNLFT 437 (454)
Q Consensus 400 y~P~~T-------------~ll~~A~~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~ 437 (454)
.++.+. .+-...+..++ ++-+|.+ ||+...+.+.+.|.
T Consensus 287 in~~~~~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~ 344 (345)
T PLN02897 287 TTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF 344 (345)
T ss_pred ccccccccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 876321 23222233343 2345554 88888877777664
No 63
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.14 E-value=1.4e-06 Score=71.31 Aligned_cols=88 Identities=26% Similarity=0.260 Sum_probs=62.6
Q ss_pred eEEEEccchhHHHHHHHHHHCC---CeEEEE-eCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G---~~v~i~-nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
++.|||+|.+|.+++..|.+.| .+|+++ +|+++++++++++++......+ ..+ ...++|+||.|++....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~advvilav~p~~~~~-- 76 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADD-NEE-AAQEADVVILAVKPQQLPE-- 76 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEE-HHH-HHHHTSEEEE-S-GGGHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCC-hHH-hhccCCEEEEEECHHHHHH--
Confidence 5789999999999999999999 689955 9999999999999875432211 112 2346899999998643322
Q ss_pred CCCCChh--cccCCcEEEEEe
Q 012866 381 RVPVSEE--TLRDYQLVFDAV 399 (454)
Q Consensus 381 ~~~i~~~--~l~~~~~v~D~~ 399 (454)
+..+ .+.++++++|+.
T Consensus 77 ---v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 77 ---VLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp ---HHHHHHHHHTTSEEEEES
T ss_pred ---HHHHHhhccCCCEEEEeC
Confidence 2222 355778888875
No 64
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.12 E-value=0.00013 Score=73.22 Aligned_cols=202 Identities=18% Similarity=0.251 Sum_probs=123.3
Q ss_pred HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.++.+++|++..-..++-+ ++.+.++.| .++++.|+.|-+|+...+ ...++.+++. +.+-..+-. +-|
T Consensus 125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~-KDVDGl~p~----N~G 199 (364)
T PLN02616 125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE-KDVDGFHPL----NIG 199 (364)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChh----hhH
Confidence 4678999999765555542 566677777 578899999999975321 0111111111 111111100 001
Q ss_pred eEE-E------eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866 266 KLI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFE 337 (454)
Q Consensus 266 ~l~-G------~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~ 337 (454)
++. | .----.|++..|+. .+.+++||+|+|||-+ -.|+.++.-|.+.|+.|+++.....
T Consensus 200 ~L~~g~~~~~f~PCTp~avielL~~-------------y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~ 266 (364)
T PLN02616 200 RLAMRGREPLFVPCTPKGCIELLHR-------------YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK 266 (364)
T ss_pred HHhcCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCC
Confidence 221 1 01224566666553 2467999999999977 5599999999999999999875421
Q ss_pred HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-------------
Q 012866 338 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK------------- 404 (454)
Q Consensus 338 ~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~------------- 404 (454)
++.+ ...++||||.|++. |. .+..++++++.+|+|+-.++.+
T Consensus 267 -----------------nl~~-~~r~ADIVIsAvGk---p~----~i~~d~vK~GAvVIDVGIn~~~~~~~~~g~klvGD 321 (364)
T PLN02616 267 -----------------NPEE-ITREADIIISAVGQ---PN----MVRGSWIKPGAVVIDVGINPVEDASSPRGYRLVGD 321 (364)
T ss_pred -----------------CHHH-HHhhCCEEEEcCCC---cC----cCCHHHcCCCCEEEeccccccccccccCCCeEEec
Confidence 2222 34678999988853 22 4788999999999999776521
Q ss_pred CHHHHHHHHCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866 405 TRLLKDAEAAGA--IIVSGVE-----MFLRQAIGQFNLFT 437 (454)
Q Consensus 405 T~ll~~A~~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~ 437 (454)
-.|-...+..++ ++-+|.+ ||+...+.+.+.+.
T Consensus 322 Vdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~ 361 (364)
T PLN02616 322 VCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIH 361 (364)
T ss_pred CcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 123222223333 2445655 77777776665544
No 65
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=98.11 E-value=5.3e-05 Score=73.37 Aligned_cols=216 Identities=18% Similarity=0.238 Sum_probs=136.9
Q ss_pred EEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhhhc
Q 012866 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEV 245 (454)
Q Consensus 176 ~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~~ 245 (454)
.-++|+--+....=.+-.+..++.|+...+..++. +++.+.++.+ .++++.|+-|-.|.= +.++..++-
T Consensus 35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p- 113 (283)
T COG0190 35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDP- 113 (283)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCc-
Confidence 44566544333334455788999999988888764 3677777766 688999999999953 233332210
Q ss_pred CHhHhHccceeEEEEeCCCCeEE-E---e-eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-HHHHH
Q 012866 246 HPLAQAIAAVNTIIRRPSDGKLI-G---Y-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALA 319 (454)
Q Consensus 246 ~~~A~~igavNTi~~~~~~g~l~-G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~-arai~ 319 (454)
+-.+.-....|. |++. | + -.--.|++..|++. +.+++||+++|||.+.. ||.++
T Consensus 114 ~KDVDG~hp~N~-------g~L~~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla 173 (283)
T COG0190 114 EKDVDGFHPYNL-------GKLAQGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLA 173 (283)
T ss_pred CCCccccChhHh-------cchhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHH
Confidence 000000111111 3333 2 0 12357888877652 36789999999998854 99999
Q ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866 320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
..|...++.|+++..... ++.+ ..+++|++|.|+.. |. .+..++++++.+|+|+-
T Consensus 174 ~lL~~~naTVtvcHs~T~-----------------~l~~-~~k~ADIvv~AvG~---p~----~i~~d~vk~gavVIDVG 228 (283)
T COG0190 174 LLLLNANATVTVCHSRTK-----------------DLAS-ITKNADIVVVAVGK---PH----FIKADMVKPGAVVIDVG 228 (283)
T ss_pred HHHHhCCCEEEEEcCCCC-----------------CHHH-HhhhCCEEEEecCC---cc----ccccccccCCCEEEecC
Confidence 999999999999986531 1222 34678999988853 22 46778999999999996
Q ss_pred cCCCC-------CHHHHHHHHCCCc-eec-cHH-----HHHHHHHHHHHHhc
Q 012866 400 YTPRK-------TRLLKDAEAAGAI-IVS-GVE-----MFLRQAIGQFNLFT 437 (454)
Q Consensus 400 y~P~~-------T~ll~~A~~~G~~-~~~-Gl~-----mlv~Qa~~~f~lw~ 437 (454)
.+..+ ..|-...++.++. -++ |.+ ||+..-..+++...
T Consensus 229 inrv~~~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~ 280 (283)
T COG0190 229 INRVNDGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQR 280 (283)
T ss_pred CccccCCceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 66432 3333333334432 344 554 78777777766543
No 66
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=98.11 E-value=0.00012 Score=72.15 Aligned_cols=202 Identities=16% Similarity=0.207 Sum_probs=123.2
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++..-..++- +++.+.++.| .++++.|+.|-+|+-..+ ...++.+++. +.+-..+-. +-|
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~-KDVDGl~~~----n~g 135 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE-KDVDGFHPL----NIG 135 (299)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc-cccCccCHh----hHh
Confidence 457899999987666653 3577777777 678899999999964221 1111111111 111111100 012
Q ss_pred eEE-E--e----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866 266 KLI-G--Y----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFE 337 (454)
Q Consensus 266 ~l~-G--~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~ 337 (454)
++. | . =---.|++..|+. .+.+++||+|+|||-+ -.||.++.-|.+.|+.|+++.....
T Consensus 136 ~l~~~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~ 202 (299)
T PLN02516 136 KLAMKGREPLFLPCTPKGCLELLSR-------------SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP 202 (299)
T ss_pred hHhcCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 222 1 0 1223455555543 2468999999999977 5599999999999999999975421
Q ss_pred HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCH-------HH--
Q 012866 338 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR-------LL-- 408 (454)
Q Consensus 338 ~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-------ll-- 408 (454)
++.+ ...++|+||.|++. | ..+..++++++.+|+|+-.+..+.+ +.
T Consensus 203 -----------------nl~~-~~~~ADIvv~AvGk---~----~~i~~~~vk~gavVIDvGin~~~~~~~~~g~kl~GD 257 (299)
T PLN02516 203 -----------------DPES-IVREADIVIAAAGQ---A----MMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGD 257 (299)
T ss_pred -----------------CHHH-HHhhCCEEEEcCCC---c----CccCHHHcCCCCEEEEeeccccCcccccCCCceEcC
Confidence 1222 34678999988753 3 2578899999999999987653111 10
Q ss_pred ---HHHHHC-CC--ceeccH-----HHHHHHHHHHHHHhc
Q 012866 409 ---KDAEAA-GA--IIVSGV-----EMFLRQAIGQFNLFT 437 (454)
Q Consensus 409 ---~~A~~~-G~--~~~~Gl-----~mlv~Qa~~~f~lw~ 437 (454)
+.+++. ++ ++-+|. -||+.+.+.+.+.|.
T Consensus 258 vd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 297 (299)
T PLN02516 258 VDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVF 297 (299)
T ss_pred cChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 222222 22 233454 488888887777765
No 67
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=5.4e-05 Score=74.12 Aligned_cols=167 Identities=17% Similarity=0.260 Sum_probs=107.5
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+.++++|++.....++- +++.+.++.| .++++.|+.|-+|+...+ ...++.++|. +.+-..+-. + -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~-KDVDGl~~~-N---~g 128 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS-KDIDGFHPL-N---VG 128 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccccCCcc-c---hh
Confidence 467899999988777764 2566777766 578899999999975321 1111111111 111111110 0 12
Q ss_pred eEE-Ee-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 266 KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 266 ~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
++. |. ----.|++..|+. .+.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++.....
T Consensus 129 ~l~~g~~~~~~PcTp~av~~lL~~-------------y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~- 194 (288)
T PRK14171 129 YLHSGISQGFIPCTALGCLAVIKK-------------YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH- 194 (288)
T ss_pred hhhcCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-
Confidence 221 11 1223455665543 2467999999999977 5599999999999999999884311
Q ss_pred HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
++.+ ...++||||.|++. |. .+..++++++.+|+|+-.+.
T Consensus 195 ----------------~L~~-~~~~ADIvV~AvGk---p~----~i~~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 195 ----------------NLSS-ITSKADIVVAAIGS---PL----KLTAEYFNPESIVIDVGINR 234 (288)
T ss_pred ----------------CHHH-HHhhCCEEEEccCC---CC----ccCHHHcCCCCEEEEeeccc
Confidence 1222 24578999988853 32 57889999999999998775
No 68
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=4.3e-05 Score=74.67 Aligned_cols=198 Identities=17% Similarity=0.279 Sum_probs=122.2
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+.++++|++.....++- +++.+.++.| .++++.|+.|-+|+...+ ...++.+++. +.+-..+.. + -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g 129 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE-KDVDGVTTL-S---FG 129 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccccCChh-h---HH
Confidence 468899999988777754 2577777777 578899999999975322 1111111111 111111110 0 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .|. -.--.|+++.|+. .+.+++||+|+|+|-+ -.|+.++.-|.+.|+.|+++.....
T Consensus 130 ~l~~g~~~~~PcTp~avi~ll~~-------------y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~-- 194 (284)
T PRK14177 130 KLSMGVETYLPCTPYGMVLLLKE-------------YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ-- 194 (284)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--
Confidence 11 111 1234566666553 2468999999999977 5599999999999999999884321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC---CCHHHHHHHHCCC
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR---KTRLLKDAEAAGA 416 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~---~T~ll~~A~~~G~ 416 (454)
++.+ ...++|+||.|++. |. .+..++++++++|+|+-.+.. +-.|-...+..++
T Consensus 195 ---------------~l~~-~~~~ADIvIsAvGk---~~----~i~~~~ik~gavVIDvGin~~~~GDVd~~~v~~~a~~ 251 (284)
T PRK14177 195 ---------------NLPS-IVRQADIIVGAVGK---PE----FIKADWISEGAVLLDAGYNPGNVGDIEISKAKDKSSF 251 (284)
T ss_pred ---------------CHHH-HHhhCCEEEEeCCC---cC----ccCHHHcCCCCEEEEecCcccccCCcCHHHHhhhccE
Confidence 1222 24578999988753 22 478899999999999987643 2222222222332
Q ss_pred --ceeccHH-----HHHHHHHHHH
Q 012866 417 --IIVSGVE-----MFLRQAIGQF 433 (454)
Q Consensus 417 --~~~~Gl~-----mlv~Qa~~~f 433 (454)
++-+|.+ ||+.+.+..+
T Consensus 252 iTPVPGGVGp~T~a~L~~N~~~a~ 275 (284)
T PRK14177 252 YTPVPGGVGPMTIAVLLLQTLYSF 275 (284)
T ss_pred ecCCCCCChHHHHHHHHHHHHHHH
Confidence 2345555 7777776664
No 69
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.10 E-value=1e-06 Score=90.69 Aligned_cols=123 Identities=24% Similarity=0.313 Sum_probs=84.2
Q ss_pred EEEEccchhHHHHHHHHHHCC-C-eEEEEeCCHHHHHHHHHHhcC-C--c--cccc---cccccCCCCccEEEECCCCCC
Q 012866 306 FVLAGAGGAGRALAFGAKSRG-A-RVVIFDIDFERAKSLASDVMG-A--A--RPFE---DILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 306 vlViGaGG~arai~~~L~~~G-~-~v~i~nRt~~~a~~la~~~~~-~--~--~~~~---~l~~~~~~~~divInat~~g~ 375 (454)
|+|+|+|.+|++++..|.+.+ . +|+|.+|+.++++++++.+.. . . ++.. ++.+ .+.++|+||||.+.-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAE-LLRGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHH-HHTTSSEEEE-SSGGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHH-HHhcCCEEEECCccch
Confidence 689999999999999999886 4 899999999999999876422 1 1 2222 2444 3567899999997421
Q ss_pred CCCCCCCCCChhcccCCcEEEEEec-CCCCCHHHHHHHHCCCceeccHH-------HHHHHHHHHHH
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDAVY-TPRKTRLLKDAEAAGAIIVSGVE-------MFLRQAIGQFN 434 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~~y-~P~~T~ll~~A~~~G~~~~~Gl~-------mlv~Qa~~~f~ 434 (454)
..++-..++..+.-.+|..| .+....+-++|+++|..++.|.+ +++.+++.+|.
T Consensus 80 -----~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 80 -----GEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp -----HHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence 12344566777888999766 44455666888899988776543 88999999988
No 70
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.09 E-value=1.7e-06 Score=78.29 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=69.1
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
+++.+||.|-||++++..|.+.|++|++|||++++++++.+. +... .+...+ ...++|+|+.+.|.+-. .....
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-g~~~--~~s~~e-~~~~~dvvi~~v~~~~~--v~~v~ 75 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-GAEV--ADSPAE-AAEQADVVILCVPDDDA--VEAVL 75 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-TEEE--ESSHHH-HHHHBSEEEE-SSSHHH--HHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-hhhh--hhhhhh-HhhcccceEeecccchh--hhhhh
Confidence 478999999999999999999999999999999999999876 2211 122222 23457999988874311 01111
Q ss_pred CC---hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866 384 VS---EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV 419 (454)
Q Consensus 384 i~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~ 419 (454)
.. ...+.++.+++|+... |..+ .+.++++++|+.++
T Consensus 76 ~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 11 2345678999999876 4433 33344456787544
No 71
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=9.6e-05 Score=72.76 Aligned_cols=202 Identities=19% Similarity=0.277 Sum_probs=125.7
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++- +++.+.++.+ .++++.|+.|-+|.-..+ -..++.+++. +.+-..+..- -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 129 (297)
T PRK14168 55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD-KDVDGFHPVN----VG 129 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-ccccccChhh----HH
Confidence 467899999987665543 3577777777 678899999999963211 1111111111 1111111110 01
Q ss_pred eE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEe
Q 012866 266 KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFD 333 (454)
Q Consensus 266 ~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~n 333 (454)
++ .|. -.--.|+++.|+. .+.+++||+|+|||.+ -.|+.++.-|.+. ++.|+++.
T Consensus 130 ~l~~~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 130 RLMIGGDEVKFLPCTPAGIQEMLVR-------------SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred HHhcCCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 11 111 1225566666553 2468999999999977 5599999999988 67999986
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC----------
Q 012866 334 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR---------- 403 (454)
Q Consensus 334 Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~---------- 403 (454)
+... ++.+ ...++|+||.|+.. |. .+..++++++.+|+|+-.+..
T Consensus 197 s~T~-----------------~l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~g~~~ 251 (297)
T PRK14168 197 TRSK-----------------NLAR-HCQRADILIVAAGV---PN----LVKPEWIKPGATVIDVGVNRVGTNESTGKAI 251 (297)
T ss_pred CCCc-----------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEecCCCccCccccCCCcc
Confidence 4321 1222 34678999998853 22 488899999999999976541
Q ss_pred ---CCHHHHHHHH-CCC--ceeccHH-----HHHHHHHHHHHHhcC
Q 012866 404 ---KTRLLKDAEA-AGA--IIVSGVE-----MFLRQAIGQFNLFTG 438 (454)
Q Consensus 404 ---~T~ll~~A~~-~G~--~~~~Gl~-----mlv~Qa~~~f~lw~g 438 (454)
+-.| +.+++ .++ ++-+|.+ ||++..+.+.+.|.|
T Consensus 252 ~~GDVdf-e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 296 (297)
T PRK14168 252 LSGDVDF-DAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLS 296 (297)
T ss_pred eeccccH-HHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 1122 23333 232 2334544 899999999999976
No 72
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=0.00023 Score=69.70 Aligned_cols=210 Identities=17% Similarity=0.260 Sum_probs=128.0
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhhcCHhH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA 249 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 249 (454)
.-++| +|-+++.-- .--++++++|++.....++- +++.+.++.+ .++...|+.|-+|+-..+ ++.
T Consensus 36 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~i-------d~~- 106 (286)
T PRK14184 36 VILVGEDPASQVYVR-NKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGL-------DSQ- 106 (286)
T ss_pred EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCC-------CHH-
Confidence 34555 444443222 22457899999988777764 3577777777 577899999999965321 111
Q ss_pred hHccceeEEEEeCCCC-------eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHH
Q 012866 250 QAIAAVNTIIRRPSDG-------KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGR 316 (454)
Q Consensus 250 ~~igavNTi~~~~~~g-------~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~ar 316 (454)
+.+.+++.-. + =|| +++ |. -.--.|++..|+. .+.+++||+++|+|-+ -.|+
T Consensus 107 ~i~~~I~p~K-D-VDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~iVG~ 171 (286)
T PRK14184 107 RCLELIDPAK-D-VDGFHPENMGRLALGLPGFRPCTPAGVMTLLER-------------YGLSPAGKKAVVVGRSNIVGK 171 (286)
T ss_pred HHHhccCccc-C-cccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchH
Confidence 1111111110 0 011 111 10 1234566666554 2467899999999987 5599
Q ss_pred HHHHHHHH----CCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCC
Q 012866 317 ALAFGAKS----RGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDY 392 (454)
Q Consensus 317 ai~~~L~~----~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~ 392 (454)
.++.-|.+ .++.|+++..+... + .+ ...++|+||.|+.. |. .+..++++++
T Consensus 172 Pla~lL~~~~~~~~AtVt~~hs~t~~---l--------------~~-~~~~ADIVI~AvG~---p~----li~~~~vk~G 226 (286)
T PRK14184 172 PLALMLGAPGKFANATVTVCHSRTPD---L--------------AE-ECREADFLFVAIGR---PR----FVTADMVKPG 226 (286)
T ss_pred HHHHHHhCCcccCCCEEEEEeCCchh---H--------------HH-HHHhCCEEEEecCC---CC----cCCHHHcCCC
Confidence 99999998 78899998765322 1 11 24568999998843 32 4788999999
Q ss_pred cEEEEEecCCC------CCHHHHHHHHCCCc--eeccHH-----HHHHHHHHHHH
Q 012866 393 QLVFDAVYTPR------KTRLLKDAEAAGAI--IVSGVE-----MFLRQAIGQFN 434 (454)
Q Consensus 393 ~~v~D~~y~P~------~T~ll~~A~~~G~~--~~~Gl~-----mlv~Qa~~~f~ 434 (454)
.+|+|+..++. +-.|-...+..++. +-+|.+ ||+.+.+.+.+
T Consensus 227 avVIDVGi~~~~~~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~ 281 (286)
T PRK14184 227 AVVVDVGINRTDDGLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281 (286)
T ss_pred CEEEEeeeeccCCCccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHH
Confidence 99999987762 23332323333432 334544 77777766554
No 73
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.08 E-value=4.7e-06 Score=81.55 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 384 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i 384 (454)
+|.+||.|-||..++..|.+.|++++++||+++++.+++...|.....- ..+ ....+|+||.+.+-+ +.+....+
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s--~~e-aa~~aDvVitmv~~~--~~V~~V~~ 76 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAAS--PAE-AAAEADVVITMLPDD--AAVRAVLF 76 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCC--HHH-HHHhCCEEEEecCCH--HHHHHHHh
Confidence 6889999999999999999999999999999999888887777654221 112 345789999877643 12111122
Q ss_pred Ch----hcccCCcEEEEEecC-CCC-CHHHHHHHHCCCce
Q 012866 385 SE----ETLRDYQLVFDAVYT-PRK-TRLLKDAEAAGAII 418 (454)
Q Consensus 385 ~~----~~l~~~~~v~D~~y~-P~~-T~ll~~A~~~G~~~ 418 (454)
.+ +.++++.+++|++.. |.. ..+-+.++++|+..
T Consensus 77 g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~ 116 (286)
T COG2084 77 GENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF 116 (286)
T ss_pred CccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE
Confidence 21 235689999999876 443 34555666677654
No 74
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=5.6e-05 Score=73.73 Aligned_cols=167 Identities=18% Similarity=0.225 Sum_probs=107.0
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.++++++|++.....++- +++.+.++.| .+.+..|+.|-+|+...+- ..++.+++. +.+-..+.. + -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~-n---~g 128 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN-KDIDCLTFI-S---VG 128 (278)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccCccCHh-h---HH
Confidence 468899999988877764 3566777777 5778999999999753211 111111111 111111110 0 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .|. ----.|+++.|+. .+.+++||+|+|+|-+ -.|+.++.-|.+.|+.|+++.....
T Consensus 129 ~l~~g~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~-- 193 (278)
T PRK14172 129 KFYKGEKCFLPCTPNSVITLIKS-------------LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK-- 193 (278)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC--
Confidence 11 111 1234455665543 2467999999999977 5599999999999999999975321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
++.+ ...++|+||.|++. |. .+..++++++.+|+|+-.++
T Consensus 194 ---------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 194 ---------------NLKE-VCKKADILVVAIGR---PK----FIDEEYVKEGAIVIDVGTSS 233 (278)
T ss_pred ---------------CHHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCcEEEEeeccc
Confidence 1222 24568999988863 22 48889999999999997665
No 75
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.06 E-value=5.8e-06 Score=75.87 Aligned_cols=119 Identities=22% Similarity=0.290 Sum_probs=79.7
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
...+.|+++.|+|.|.+|++++..|+..|++|+.++|+....... ...+. ...++++ .+.++|+|+++.|.. |
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~---~~~~l~e-ll~~aDiv~~~~plt--~ 103 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGV---EYVSLDE-LLAQADIVSLHLPLT--P 103 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTE---EESSHHH-HHHH-SEEEE-SSSS--T
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-ccccc---eeeehhh-hcchhhhhhhhhccc--c
Confidence 467899999999999999999999999999999999998765422 22222 2334433 345689999999964 3
Q ss_pred CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHH
Q 012866 378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEM 424 (454)
Q Consensus 378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~m 424 (454)
.+ ...++.+. ++++.+++.+.-.+. +..-+.+|-+.|...--++|.
T Consensus 104 ~T-~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178)
T PF02826_consen 104 ET-RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178)
T ss_dssp TT-TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred cc-ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence 32 23466654 567888988876654 455566677777655444443
No 76
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=4.4e-05 Score=74.62 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=114.9
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 247 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 247 (454)
.-++| +|-+++.--.. -+..+++|++.....++- +++.+.++.| .++++.|+.|-+|....+- ..+..+++
T Consensus 35 ii~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p 113 (282)
T PRK14166 35 VILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS 113 (282)
T ss_pred EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 44555 44444322222 357899999988777764 3577777766 5788999999999753221 11111111
Q ss_pred hHhHccceeEEEEeCCCCeE-EEe-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAF 320 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~ 320 (454)
. +.+-..+.+ + -|++ .|. ----.|++.-|+. .+.+++||+|+|+|-+ -.|+.++.
T Consensus 114 ~-KDVDGl~~~-N---~g~l~~g~~~~~~PcTp~avi~lL~~-------------y~i~l~Gk~vvVvGrS~iVGkPla~ 175 (282)
T PRK14166 114 S-KDVDGFHPI-N---VGYLNLGLESGFLPCTPLGVMKLLKA-------------YEIDLEGKDAVIIGASNIVGRPMAT 175 (282)
T ss_pred c-cCcccCChh-h---hHHHhcCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence 1 111111111 0 0122 121 1224566666553 2467899999999977 55999999
Q ss_pred HHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec
Q 012866 321 GAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY 400 (454)
Q Consensus 321 ~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y 400 (454)
-|.+.|+.|+++.+.... +.+ ...++||||.|++. |. .+..++++++.+|+|+-.
T Consensus 176 lL~~~~atVt~chs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~GavVIDvGi 230 (282)
T PRK14166 176 MLLNAGATVSVCHIKTKD-----------------LSL-YTRQADLIIVAAGC---VN----LLRSDMVKEGVIVVDVGI 230 (282)
T ss_pred HHHHCCCEEEEeCCCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEecc
Confidence 999999999998864221 222 24578999988863 22 478899999999999987
Q ss_pred CC
Q 012866 401 TP 402 (454)
Q Consensus 401 ~P 402 (454)
++
T Consensus 231 n~ 232 (282)
T PRK14166 231 NR 232 (282)
T ss_pred cc
Confidence 75
No 77
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.05 E-value=3.6e-05 Score=68.96 Aligned_cols=98 Identities=26% Similarity=0.264 Sum_probs=63.9
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
+..+.||+++|+|.|..||.+|..|+.+|++|+|+.+++-++-+.+.+ |.+..+++ + .+..+|++|.||...
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~d-Gf~v~~~~---~-a~~~adi~vtaTG~~--- 89 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMD-GFEVMTLE---E-ALRDADIFVTATGNK--- 89 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHT-T-EEE-HH---H-HTTT-SEEEE-SSSS---
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhc-CcEecCHH---H-HHhhCCEEEECCCCc---
Confidence 467899999999999999999999999999999999999876554321 22333333 3 356789999998531
Q ss_pred CCCCCCCChh---cccCCcEEEEEecCCCCCHH
Q 012866 378 NTDRVPVSEE---TLRDYQLVFDAVYTPRKTRL 407 (454)
Q Consensus 378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~l 407 (454)
..+..+ .++++.++.++-..+.+..+
T Consensus 90 ----~vi~~e~~~~mkdgail~n~Gh~d~Eid~ 118 (162)
T PF00670_consen 90 ----DVITGEHFRQMKDGAILANAGHFDVEIDV 118 (162)
T ss_dssp ----SSB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred ----cccCHHHHHHhcCCeEEeccCcCceeEee
Confidence 124433 46788999999888777654
No 78
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=6.9e-05 Score=73.76 Aligned_cols=200 Identities=16% Similarity=0.220 Sum_probs=123.5
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-++++++|++..-..++. +++.+.++.+ .+++..|+.|=.|+-..+ ...++.+++. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (297)
T PRK14186 54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLN----LG 128 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence 467899999987666653 3677777777 577899999999974222 1122222211 1111111110 01
Q ss_pred eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .| .-.--.|++..|+. .+.+++||+|+|||-+ -.|+.++.-|.+.|+.|+++.....
T Consensus 129 ~l~~~~~~~~PcTp~aii~lL~~-------------~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~-- 193 (297)
T PRK14186 129 RLVKGEPGLRSCTPAGVMRLLRS-------------QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ-- 193 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC--
Confidence 11 01 11235666666553 2467999999999977 5599999999999999999864321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-----------CHHH
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-----------TRLL 408 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-----------T~ll 408 (454)
++.+ ...++||||.|++. |. .+..++++++.+|+|+-.+... -.+-
T Consensus 194 ---------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~ 250 (297)
T PRK14186 194 ---------------DLAS-ITREADILVAAAGR---PN----LIGAEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFE 250 (297)
T ss_pred ---------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEeccccccccccCCceeCCccHH
Confidence 1222 24578999988863 32 4788999999999999877531 2221
Q ss_pred HHHHHCCC--ceeccHH-----HHHHHHHHHHHH
Q 012866 409 KDAEAAGA--IIVSGVE-----MFLRQAIGQFNL 435 (454)
Q Consensus 409 ~~A~~~G~--~~~~Gl~-----mlv~Qa~~~f~l 435 (454)
...+..++ ++-+|.+ ||+.+.+.+++.
T Consensus 251 ~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~ 284 (297)
T PRK14186 251 EVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQK 284 (297)
T ss_pred HHHhhceEecCCCCCchHHHHHHHHHHHHHHHHH
Confidence 22222333 2335544 888887777654
No 79
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=0.00012 Score=71.98 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=113.2
Q ss_pred EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866 176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 247 (454)
Q Consensus 176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 247 (454)
+-++| +|-+++.- ..-.+.++++|++.....++- +++...++.| .++...|+.|-+|+...+- ..++.++|
T Consensus 37 iI~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p 115 (294)
T PRK14187 37 VILVGDDPASQLYV-RNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDP 115 (294)
T ss_pred EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 44556 34333322 123467899999988777764 2566667666 5778999999999752110 11111111
Q ss_pred hHhHccceeEEEEeCCCCeEE-Ee------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKLI-GY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA 319 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~-G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~ 319 (454)
. +.+-..+-. +-|+++ |. ----.|++..|+. .+.+++||+++|+|-+ -.|+.++
T Consensus 116 ~-KDVDGl~~~----n~g~l~~g~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla 177 (294)
T PRK14187 116 E-KDVDGFHNE----NVGRLFTGQKKNCLIPCTPKGCLYLIKT-------------ITRNLSGSDAVVIGRSNIVGKPMA 177 (294)
T ss_pred c-cCcccCChh----hHHHHhCCCCCCCccCcCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1 111111100 001211 21 1134566665543 2467999999999987 5599999
Q ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866 320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
.-|.+.|+.|+++..... ++.+ ...++||||.|++. |. .+..++++++.+|+|+-
T Consensus 178 ~lL~~~~aTVt~chs~T~-----------------~l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gaiVIDVG 232 (294)
T PRK14187 178 CLLLGENCTVTTVHSATR-----------------DLAD-YCSKADILVAAVGI---PN----FVKYSWIKKGAIVIDVG 232 (294)
T ss_pred HHHhhCCCEEEEeCCCCC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEec
Confidence 999999999999886421 1222 34678999988863 22 47889999999999997
Q ss_pred cCC
Q 012866 400 YTP 402 (454)
Q Consensus 400 y~P 402 (454)
.++
T Consensus 233 in~ 235 (294)
T PRK14187 233 INS 235 (294)
T ss_pred ccc
Confidence 664
No 80
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=8.5e-05 Score=72.51 Aligned_cols=167 Identities=17% Similarity=0.273 Sum_probs=107.9
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.++++++|++..-..++- +++.+.++.+ .+++..|+.|-.|....+ ...++.++|. +.+-..+-+ + -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g 127 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK-KDVDGFHPY-N---VG 127 (281)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch-hcccccChh-h---hh
Confidence 467899999986666644 2577777777 578899999999975222 1112212211 111111110 0 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++ .|. ----.|++..|+. .+.+++||+++|+|-| -.|+.++..|.+.|+.|+++.....
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~-- 192 (281)
T PRK14183 128 RLVTGLDGFVPCTPLGVMELLEE-------------YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTK-- 192 (281)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCc--
Confidence 11 111 1124566666543 2468999999999988 6699999999999999998874321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
++.+ ...++|+||.|++. | ..+..++++++.+|+|+-.++
T Consensus 193 ---------------~l~~-~~~~ADIvV~AvGk---p----~~i~~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 193 ---------------DLKA-HTKKADIVIVGVGK---P----NLITEDMVKEGAIVIDIGINR 232 (281)
T ss_pred ---------------CHHH-HHhhCCEEEEecCc---c----cccCHHHcCCCcEEEEeeccc
Confidence 1222 34678999998853 2 247889999999999998765
No 81
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=0.00013 Score=71.76 Aligned_cols=167 Identities=14% Similarity=0.231 Sum_probs=106.1
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++- +++.+.++.+ .++.+.|+.|-.|....+ ...++.++|. +.+-..+-+ + -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~-N---~g 127 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR-KDVDGFHPI-N---VG 127 (293)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcCCCCHh-h---HH
Confidence 468899999987766654 2566667666 678899999999975222 1111111111 111111100 0 01
Q ss_pred eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEeCC
Q 012866 266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFDID 335 (454)
Q Consensus 266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~nRt 335 (454)
+++ |. ----.|+++.|+. .+.+++||+|+|||-+ -.|+.++.-|.+. ++.|+++...
T Consensus 128 ~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~ 194 (293)
T PRK14185 128 RMSIGLPCFVSATPNGILELLKR-------------YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR 194 (293)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC
Confidence 221 11 1234566666553 2467999999999987 5599999999988 5789998643
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 336 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 336 ~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
.. ++.+ ...++|+||.|++. |. .+..++++++.+|+|+-.++
T Consensus 195 T~-----------------nl~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 195 SK-----------------NLKK-ECLEADIIIAALGQ---PE----FVKADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecCcc
Confidence 21 1222 23568999988863 22 47889999999999998775
No 82
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=7.6e-05 Score=73.06 Aligned_cols=168 Identities=18% Similarity=0.274 Sum_probs=109.2
Q ss_pred HHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCHhHhHccceeEEEEeCCC
Q 012866 192 HNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSD 264 (454)
Q Consensus 192 hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~ 264 (454)
-.++++++|++.....++-+ ++.+.++.| .++++.|+.|-.|.-..+- ..++.++|. +.+-..+..- -
T Consensus 47 k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~n----~ 121 (287)
T PRK14181 47 KVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD-KDVDGLHPVN----M 121 (287)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc-cCcccCChhh----H
Confidence 35688999999887777542 677777777 6788999999999653221 122222211 1111111110 0
Q ss_pred CeEE-Ee-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEe
Q 012866 265 GKLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFD 333 (454)
Q Consensus 265 g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~n 333 (454)
|+++ |. ----.|+++.|+. .+.+++||+|+|||-+ -.||.++.-|.+. ++.|+++.
T Consensus 122 g~l~~g~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvch 188 (287)
T PRK14181 122 GKLLLGETDGFIPCTPAGIIELLKY-------------YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLH 188 (287)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeC
Confidence 1221 21 1234566666553 2467999999999977 5599999999988 67999987
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 334 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 334 Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
.... ++.+ ...++|+||.|++. |. .+..++++++.+|+|+-.++
T Consensus 189 s~T~-----------------~l~~-~~~~ADIvV~AvG~---p~----~i~~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 189 SQSE-----------------NLTE-ILKTADIIIAAIGV---PL----FIKEEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CCCC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecccc
Confidence 5321 1222 24578999998863 22 48889999999999998775
No 83
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=8.9e-05 Score=72.66 Aligned_cols=167 Identities=18% Similarity=0.303 Sum_probs=107.4
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+.++++|++.....++- +++.+.++.| .+.+..|+.|-+|.-..+ ...++.+++. +.+-..+.+- -|
T Consensus 51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 125 (287)
T PRK14173 51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL-KDVDGFHPLN----VG 125 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-ccccccChhh----hH
Confidence 467899999988877764 3577777777 577899999999974311 1111111111 1111111110 01
Q ss_pred eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
+++ |. -.--.|+++.|+. .+.+++||+|+|+|.+ -.|+.++.-|.+.|+.|+++.+...
T Consensus 126 ~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~-- 190 (287)
T PRK14173 126 RLWMGGEALEPCTPAGVVRLLKH-------------YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ-- 190 (287)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC--
Confidence 111 11 1234455565543 2467999999999977 5599999999999999999875422
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
++.+ ...++||||.|++. | ..+..++++++.+|+|+-.+.
T Consensus 191 ---------------~l~~-~~~~ADIvIsAvGk---p----~~i~~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 191 ---------------DLPA-VTRRADVLVVAVGR---P----HLITPEMVRPGAVVVDVGINR 230 (287)
T ss_pred ---------------CHHH-HHhhCCEEEEecCC---c----CccCHHHcCCCCEEEEccCcc
Confidence 1222 34578999988853 2 247889999999999997765
No 84
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00019 Score=70.32 Aligned_cols=167 Identities=16% Similarity=0.294 Sum_probs=107.5
Q ss_pred HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
-+..+++|++.....++- +++.+.++.+ .++++.|+.|-+|+-..+ -..++.++|. +.+-..+-.- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~-KDVDGl~~~n----~g 128 (284)
T PRK14193 54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA-KDADGLHPTN----LG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-cCccCCChhh----hh
Confidence 467899999987777764 2566777766 577899999999974211 1111111111 1111111100 01
Q ss_pred eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHH--CCCeEEEEeCCHH
Q 012866 266 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKS--RGARVVIFDIDFE 337 (454)
Q Consensus 266 ~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~--~G~~v~i~nRt~~ 337 (454)
+++ | .-.--.|++..|+. .+.+++||+++|||.+ -.|+.++.-|.+ .++.|+++.....
T Consensus 129 ~l~~~~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~ 195 (284)
T PRK14193 129 RLVLNEPAPLPCTPRGIVHLLRR-------------YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTR 195 (284)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCC
Confidence 111 1 12334566666543 2467899999999987 559999999988 6889999876421
Q ss_pred HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 338 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 338 ~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
++.+ ...++|+||.|++. |. .+..++++++.+|+|+-.++
T Consensus 196 -----------------~l~~-~~k~ADIvV~AvGk---p~----~i~~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 196 -----------------DLAA-HTRRADIIVAAAGV---AH----LVTADMVKPGAAVLDVGVSR 235 (284)
T ss_pred -----------------CHHH-HHHhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccccc
Confidence 1222 34678999988864 22 48889999999999998876
No 85
>PLN02928 oxidoreductase family protein
Probab=97.95 E-value=2e-05 Score=80.00 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=52.6
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--------HHhcCCccccccccccCCCCccEEEEC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA--------SDVMGAARPFEDILNFQPEKGAILANA 370 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la--------~~~~~~~~~~~~l~~~~~~~~divIna 370 (454)
..+.||++.|+|.|.+|++++..|+.+|++|+.++|+..+..... ..+........++.+ .+.++|+|+++
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~aDiVvl~ 233 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEADIVVLC 233 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhCCEEEEC
Confidence 357899999999999999999999999999999999843322110 000001112334544 45678999999
Q ss_pred CCCC
Q 012866 371 TPLG 374 (454)
Q Consensus 371 t~~g 374 (454)
+|..
T Consensus 234 lPlt 237 (347)
T PLN02928 234 CTLT 237 (347)
T ss_pred CCCC
Confidence 9864
No 86
>PRK06046 alanine dehydrogenase; Validated
Probab=97.94 E-value=3.4e-05 Score=77.71 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=68.3
Q ss_pred CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
-+++.|+|+|+.|+..+.++.. .++ +|.|++|+.++++++++++... ....+++++ .+. +|+|++|||.. .
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-aDiVv~aTps~-~ 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEE-ACD-CDILVTTTPSR-K 205 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-Hhh-CCEEEEecCCC-C
Confidence 4789999999999999999884 467 8999999999999999887421 112334444 344 89999999863 2
Q ss_pred CCCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866 377 PNTDRVPVSEETLRDYQLVFDA-VYTPR 403 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~-~y~P~ 403 (454)
| .+..+|++++..|.-+ .|.|.
T Consensus 206 P-----~~~~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 P-----VVKAEWIKEGTHINAIGADAPG 228 (326)
T ss_pred c-----EecHHHcCCCCEEEecCCCCCc
Confidence 2 2667788888776655 34554
No 87
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=0.0001 Score=72.60 Aligned_cols=204 Identities=20% Similarity=0.260 Sum_probs=125.3
Q ss_pred HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.++++++|++.....++-+ ++.+.++.+ .+++..|+.|-+|....+ ...++.++|. +.+-..+..- -|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (297)
T PRK14167 53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG 127 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence 4688999999887777642 577777777 678899999999975322 1122222211 1111111110 01
Q ss_pred eE-EEee----ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEeCC
Q 012866 266 KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFDID 335 (454)
Q Consensus 266 ~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~nRt 335 (454)
++ .|.+ ---.|+++.|+. .+.+++||+|+|||-+ -.||.++.-|.+. ++.|+++...
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~ 194 (297)
T PRK14167 128 RLVAGDARFKPCTPHGIQKLLAA-------------AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR 194 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC
Confidence 12 1111 234566666553 2467999999999977 5599999999887 6799998543
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC--C----HH--
Q 012866 336 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK--T----RL-- 407 (454)
Q Consensus 336 ~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~--T----~l-- 407 (454)
.. ++.+ ...++||||.|+.. |. .+..++++++.+|+|+-.++.+ | .+
T Consensus 195 T~-----------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gaiVIDvGin~~~~~~~~g~kl~G 249 (297)
T PRK14167 195 TD-----------------DLAA-KTRRADIVVAAAGV---PE----LIDGSMLSEGATVIDVGINRVDADTEKGYELVG 249 (297)
T ss_pred CC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEccccccCcccccCCceee
Confidence 21 1222 34678999988753 22 5788999999999999877521 1 11
Q ss_pred ---HHHHHH-CCC--ceeccHH-----HHHHHHHHHHHHhcCC
Q 012866 408 ---LKDAEA-AGA--IIVSGVE-----MFLRQAIGQFNLFTGK 439 (454)
Q Consensus 408 ---l~~A~~-~G~--~~~~Gl~-----mlv~Qa~~~f~lw~g~ 439 (454)
.+.+++ .++ ++-+|.+ ||+.+.+.+++.-.+.
T Consensus 250 DVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 292 (297)
T PRK14167 250 DVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV 292 (297)
T ss_pred cCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 022222 232 2344544 8888888777654443
No 88
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=0.00027 Score=69.68 Aligned_cols=167 Identities=15% Similarity=0.214 Sum_probs=107.1
Q ss_pred HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHHh--hhhhcCHhHhHccceeEEEEeCCCC
Q 012866 193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVMK--FCDEVHPLAQAIAAVNTIIRRPSDG 265 (454)
Q Consensus 193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~--~~d~~~~~A~~igavNTi~~~~~~g 265 (454)
.+.++++|++.....++-+ ++.+.++.+ .++++.|+.|-.|....+-. .++.++|. +.+-..+.. +-|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~-KDVDGl~~~----n~g 127 (295)
T PRK14174 53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA-KDVDGFHPE----NLG 127 (295)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChh----hHH
Confidence 4678999999888777653 677777777 57889999999997521110 11111111 111111110 012
Q ss_pred eEE-Ee--e----ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHH----CCCeEEEEe
Q 012866 266 KLI-GY--N----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKS----RGARVVIFD 333 (454)
Q Consensus 266 ~l~-G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~----~G~~v~i~n 333 (454)
+++ |. + ---.|++..|+. .+.+++||+|+|||.+ -.||.++.-|.+ .|+.|+++.
T Consensus 128 ~l~~~~~~~~~~PcTp~ail~ll~~-------------y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~h 194 (295)
T PRK14174 128 RLVMGHLDKCFVSCTPYGILELLGR-------------YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICH 194 (295)
T ss_pred HHhcCCCCCCcCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEe
Confidence 221 21 1 234455555543 2467899999999987 459999999887 578999988
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 334 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 334 Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
.+....+ + ...++|+||.|++. | ..+..++++++.+|+|+..+.
T Consensus 195 s~t~~l~-----------------~-~~~~ADIvI~Avg~---~----~li~~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 195 SATKDIP-----------------S-YTRQADILIAAIGK---A----RFITADMVKPGAVVIDVGINR 238 (295)
T ss_pred CCchhHH-----------------H-HHHhCCEEEEecCc---c----CccCHHHcCCCCEEEEeeccc
Confidence 6643322 1 23568999998842 2 248889999999999998765
No 89
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.87 E-value=0.00014 Score=63.98 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 012866 298 GSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 298 ~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
+.+++||+++|+|.+ -.|+.++..|.+.|+.|++++++.... ++ ..+++|+||.+|+.-
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l-----------------~~-~v~~ADIVvsAtg~~-- 82 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQL-----------------QS-KVHDADVVVVGSPKP-- 82 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCH-----------------HH-HHhhCCEEEEecCCC--
Confidence 468999999999976 669999999999999999998653221 12 346789999999742
Q ss_pred CCCCCCCCChhcccCCcEEEEEecCC
Q 012866 377 PNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
+ .+..+|++++.+|+|+-.+.
T Consensus 83 ~-----~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 83 E-----KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred C-----ccCHHHcCCCCEEEEcCCCc
Confidence 1 47889999999999987654
No 90
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.84 E-value=4.1e-05 Score=77.33 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=52.6
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+.||++.|||.|.+|+.++..|...|++|.+++|+..... ...++... .++.+ .+.++|+|+.++|..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~---~~l~e-ll~~aDiV~l~lP~t 215 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEY---RPLEE-LLRESDFVSLHVPLT 215 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEe---cCHHH-HHhhCCEEEEeCCCC
Confidence 457899999999999999999999999999999999865432 23333222 23333 346789999988863
No 91
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.83 E-value=2.6e-05 Score=77.56 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=73.8
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 384 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i 384 (454)
++.|||.|-+|.+++..|.+.|.+|+++||++++++++.+.-.....+.+++.+ .+..+|+|+-++|.+... . .+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~~~~~dvIi~~vp~~~~~---~-v~ 76 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQ-RLSAPRVVWVMVPHGIVD---A-VL 76 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHh-hcCCCCEEEEEcCchHHH---H-HH
Confidence 588999999999999999999999999999999999887642111223333332 345689999999865211 1 11
Q ss_pred C--hhcccCCcEEEEEecC-CCCCHH-HHHHHHCCCcee
Q 012866 385 S--EETLRDYQLVFDAVYT-PRKTRL-LKDAEAAGAIIV 419 (454)
Q Consensus 385 ~--~~~l~~~~~v~D~~y~-P~~T~l-l~~A~~~G~~~~ 419 (454)
. ...++++.+++|..-. |..|.- .++++++|..++
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~v 115 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL 115 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEE
Confidence 1 1235678899998654 444432 335556676543
No 92
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.80 E-value=4.8e-05 Score=76.17 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=60.5
Q ss_pred CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
.+++.|+|+|.-|+.-+.++.. ++. +|.|++|++++++++++++... ....++.++ .+.++|+||.||+....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~-av~~aDii~taT~s~~~- 205 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEE-AVRGADIIVTATPSTTP- 205 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHH-HHTTSSEEEE----SSE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhh-hcccCCEEEEccCCCCC-
Confidence 3689999999999999998875 567 9999999999999999988661 222334444 56789999999987531
Q ss_pred CCCCCCCChhcccCCcEEEEEe-cCCC
Q 012866 378 NTDRVPVSEETLRDYQLVFDAV-YTPR 403 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~-y~P~ 403 (454)
...+..+|++++..+.-+- |.|.
T Consensus 206 ---~P~~~~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 206 ---APVFDAEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp ---EESB-GGGS-TT-EEEE-S-SSTT
T ss_pred ---CccccHHHcCCCcEEEEecCCCCc
Confidence 0136778999988777664 3464
No 93
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.79 E-value=7.9e-05 Score=74.60 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=69.0
Q ss_pred CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
-+++.|+|+|..|+.-+.++... .. +|.|+||++++++++++.+... ....++.++ ...++|||+.||+... |
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIV~taT~s~~-P 205 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAE-VAHAANLIVTTTPSRE-P 205 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHH-HhcCCCEEEEecCCCC-c
Confidence 47899999999999999988754 45 8999999999999998776422 212234444 5678999999998532 2
Q ss_pred CCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866 378 NTDRVPVSEETLRDYQLVFDA-VYTPR 403 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~-~y~P~ 403 (454)
.+..+|++++..+.=+ .|.|.
T Consensus 206 -----~~~~~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 206 -----LLQAEDIQPGTHITAVGADSPG 227 (315)
T ss_pred -----eeCHHHcCCCcEEEecCCCCcc
Confidence 2567888888766555 34453
No 94
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.78 E-value=9.8e-05 Score=74.34 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=68.2
Q ss_pred CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcC---CccccccccccCCCCccEEEECCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMG---AARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
.+++.|||+|..|++-+.++... .. +|+|++|+.++++++++++.. .....++.++ ...++|+||.|||.. .|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~e-av~~aDiVitaT~s~-~P 205 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPRE-AVEGCDILVTTTPSR-KP 205 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHH-HhccCCEEEEecCCC-Cc
Confidence 47899999999999988877653 44 899999999999999886642 1222334444 457899999999853 22
Q ss_pred CCCCCCCChhcccCCcEEEEEe-cCCC
Q 012866 378 NTDRVPVSEETLRDYQLVFDAV-YTPR 403 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~-y~P~ 403 (454)
.+..++++++..+.-+- |.|.
T Consensus 206 -----~~~~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 206 -----VVKADWVSEGTHINAIGADAPG 227 (325)
T ss_pred -----EecHHHcCCCCEEEecCCCCcc
Confidence 25678888888766663 4453
No 95
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.76 E-value=7.1e-05 Score=74.47 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=68.4
Q ss_pred CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
-+++.|+|+|.-|+.-+.++... .. +|.||||+.++++++++++... ....++.++ ...++|||+.||+.. .
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~e-av~~aDIV~taT~s~-~ 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEA-ALRDADTITSITNSD-T 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC-C
Confidence 47899999999999998888764 56 8999999999999999887532 222334444 467899999999853 2
Q ss_pred CCCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866 377 PNTDRVPVSEETLRDYQLVFDA-VYTPR 403 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~-~y~P~ 403 (454)
| .+..+|++++..|.-+ .|.|.
T Consensus 195 P-----~~~~~~l~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 195 P-----IFNRKYLGDEYHVNLAGSNYPN 217 (301)
T ss_pred c-----EecHHHcCCCceEEecCCCCCC
Confidence 2 2567788886544333 34453
No 96
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.75 E-value=0.00013 Score=65.68 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=55.1
Q ss_pred CCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 012866 298 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
+.+++||+|+|+|.+. .|+.++..|.+.|+.|+++.......+ + ...++|+||.|++.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-----------------~-~~~~ADIVVsa~G~--- 89 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-----------------E-ITRRADIVVSAVGK--- 89 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-----------------H-HHTTSSEEEE-SSS---
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-----------------c-eeeeccEEeeeecc---
Confidence 4679999999999885 799999999999999999887642222 2 23568999988853
Q ss_pred CCCCCCCCChhcccCCcEEEEEecCCC
Q 012866 377 PNTDRVPVSEETLRDYQLVFDAVYTPR 403 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~~y~P~ 403 (454)
|+ .+..++++++.+|+|+-.++.
T Consensus 90 ~~----~i~~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 90 PN----LIKADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp TT-----B-GGGS-TTEEEEE--CEEE
T ss_pred cc----ccccccccCCcEEEecCCccc
Confidence 32 478899999999999977654
No 97
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=8.1e-05 Score=76.35 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=77.0
Q ss_pred CeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-C-CC-eEEEEeCCHHHHHH
Q 012866 265 GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-R-GA-RVVIFDIDFERAKS 341 (454)
Q Consensus 265 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~-G~-~v~i~nRt~~~a~~ 341 (454)
+.+.+.-|=..+.+.+ + .|. .-.-+++.|+|+|..|+.-+.++.. . .. +|.|+||+++++++
T Consensus 132 ~~lTa~RTaA~salaa-~-~LA-------------r~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~ 196 (379)
T PRK06199 132 NLLSAYRTGAVPGVGA-R-HLA-------------RKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS 196 (379)
T ss_pred cchhhhHHHHHHHHHH-H-Hhc-------------cCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 4566666766665543 1 132 1134789999999999999999887 4 37 89999999999999
Q ss_pred HHHHhcCC------ccccccccccCCCCccEEEECCCCCCC-CCCCCCCCChhcccCCcEEE
Q 012866 342 LASDVMGA------ARPFEDILNFQPEKGAILANATPLGMH-PNTDRVPVSEETLRDYQLVF 396 (454)
Q Consensus 342 la~~~~~~------~~~~~~l~~~~~~~~divInat~~g~~-p~~~~~~i~~~~l~~~~~v~ 396 (454)
+++++... ....++.++ .+.++||||.||+.... |.. ...+..+|++++..+.
T Consensus 197 f~~~~~~~~~~~~~v~~~~s~~e-av~~ADIVvtaT~s~~~~~s~-~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 197 FATWVAETYPQITNVEVVDSIEE-VVRGSDIVTYCNSGETGDPST-YPYVKREWVKPGAFLL 256 (379)
T ss_pred HHHHHHHhcCCCceEEEeCCHHH-HHcCCCEEEEccCCCCCCCCc-CcEecHHHcCCCcEEe
Confidence 99887532 112234444 46789999999975331 111 1125667887776543
No 98
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.71 E-value=0.00022 Score=75.48 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 379 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~ 379 (454)
.+.+++++|+|.||+|++++..|.+.|++|++++|+.....++.++++.....-.+-.+ .+.++|+||- |.|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~~~~d~vV~--Spgi---- 84 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASD-QLDSFSLVVT--SPGW---- 84 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchh-HhcCCCEEEe--CCCC----
Confidence 46788999999999999999999999999999999876655444443332211000001 1223455442 1111
Q ss_pred CCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHH
Q 012866 380 DRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424 (454)
Q Consensus 380 ~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~m 424 (454)
|..-|.+++|+++|++++.-.++
T Consensus 85 ----------------------~~~~p~~~~a~~~gi~v~~~~el 107 (473)
T PRK00141 85 ----------------------RPDSPLLVDAQSQGLEVIGDVEL 107 (473)
T ss_pred ----------------------CCCCHHHHHHHHCCCceeeHHHH
Confidence 22446778888888888777774
No 99
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.70 E-value=9.6e-05 Score=73.76 Aligned_cols=72 Identities=26% Similarity=0.364 Sum_probs=55.2
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divInat~~ 373 (454)
+++.|||+|++|+++++.|+..|. +|++++|+.++++.++.++.... +...+.+ .+.++|+||+|++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~--~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS--DCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH--HhCCCCEEEEccCC
Confidence 378999999999999999999995 89999999999999988773211 1111222 24689999999976
Q ss_pred CCCC
Q 012866 374 GMHP 377 (454)
Q Consensus 374 g~~p 377 (454)
.-.|
T Consensus 79 ~~~~ 82 (306)
T cd05291 79 PQKP 82 (306)
T ss_pred CCCC
Confidence 5444
No 100
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.70 E-value=0.00016 Score=70.11 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=60.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--------ccccccccc---------CCC
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RPFEDILNF---------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~---------~~~ 362 (454)
..+++++|.|| +|.|++++..|++.|++|.++.|+.+|.++|++++.... +++.+.++. ...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 45789999997 699999999999999999999999999999999886422 233221110 113
Q ss_pred CccEEEECCCCCCCC
Q 012866 363 KGAILANATPLGMHP 377 (454)
Q Consensus 363 ~~divInat~~g~~p 377 (454)
..|++||+...|...
T Consensus 84 ~IdvLVNNAG~g~~g 98 (265)
T COG0300 84 PIDVLVNNAGFGTFG 98 (265)
T ss_pred cccEEEECCCcCCcc
Confidence 589999999888764
No 101
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.69 E-value=6.5e-05 Score=74.30 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=75.0
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 384 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i 384 (454)
++.|||.|-+|++++..|.+.|.+|+++||++++++.+.+. +... ..+..+ ...++|+||.|.|... ......+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~aDivi~~vp~~~--~~~~v~~ 74 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAA-GAVT--AETARQ-VTEQADVIFTMVPDSP--QVEEVAF 74 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCcc--cCCHHH-HHhcCCEEEEecCCHH--HHHHHHc
Confidence 37899999999999999999999999999999998887653 3221 122222 3457899999988531 1111111
Q ss_pred Ch----hcccCCcEEEEEecCCCCC--HHHHHHHHCCCceecc
Q 012866 385 SE----ETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVSG 421 (454)
Q Consensus 385 ~~----~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~~G 421 (454)
.. ..++++.+++|+...+..+ .+.+.++++|..+++.
T Consensus 75 ~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~ 117 (291)
T TIGR01505 75 GENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDA 117 (291)
T ss_pred CcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEec
Confidence 11 2345678999987764432 4666777788776664
No 102
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.67 E-value=7.8e-05 Score=74.22 Aligned_cols=110 Identities=20% Similarity=0.220 Sum_probs=73.8
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-ccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-PFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
+|.|||.|-||.+++..|.+.|.+|+++||++++++++.+ .+.... +.+++.+ ...++|+||.+.|.+.. ... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~~~~e~~~-~~~~~dvvi~~v~~~~~--~~~-v 76 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-EGATGADSLEELVA-KLPAPRVVWLMVPAGEI--TDA-T 76 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCeecCCHHHHHh-hcCCCCEEEEEecCCcH--HHH-H
Confidence 5889999999999999999999999999999999988855 343321 2333322 12246899988875311 000 0
Q ss_pred CC--hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866 384 VS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV 419 (454)
Q Consensus 384 i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~ 419 (454)
+. ...++++.+++|+.-. |..| .+.+.++++|+.++
T Consensus 77 ~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 77 IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 11 1235678899999554 5444 35567778887654
No 103
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.67 E-value=5.2e-05 Score=74.44 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=80.0
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-hcCCccccccc-cccCCCCccEEEECCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD-VMGAARPFEDI-LNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~-~~~~~~~~~~l-~~~~~~~~divInat~~g~~p~~~~ 381 (454)
.+++|+|.|.+|++++..|++.|..+.|++++..++...+.. ++.......+. .. ....+|+||-|+|+......-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~-~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAE-AAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhh-hcccCCEEEEeccHHHHHHHHH
Confidence 579999999999999999999999999999988776554443 44322111111 12 3456899999999864332110
Q ss_pred CCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCC---ceeccHHHH
Q 012866 382 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMF 425 (454)
Q Consensus 382 ~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~---~~~~Gl~ml 425 (454)
. +.+ .++++.+|.|+... .++.++.+++.+- .++.|-.|+
T Consensus 83 ~-l~~-~l~~g~iv~Dv~S~--K~~v~~a~~~~~~~~~~~vg~HPM~ 125 (279)
T COG0287 83 E-LAP-HLKKGAIVTDVGSV--KSSVVEAMEKYLPGDVRFVGGHPMF 125 (279)
T ss_pred H-hcc-cCCCCCEEEecccc--cHHHHHHHHHhccCCCeeEecCCCC
Confidence 0 111 46788999999765 5777788887653 477776665
No 104
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.65 E-value=0.00019 Score=72.64 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=68.0
Q ss_pred CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
-++++|+|+|.-|+.-+.++.. +.. +|+||||++++++++++++... ....+++++ .+.++|+|+.||+.. .+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIIvtaT~S~-~~ 206 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAE-AVEGADIITTVTADK-TN 206 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC-CC
Confidence 4789999999999998887764 456 8999999999999999888532 112234444 567899999999742 11
Q ss_pred CCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866 378 NTDRVPVSEETLRDYQLVFDA-VYTPR 403 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~-~y~P~ 403 (454)
...+..+|++++..|.=+ .|.|.
T Consensus 207 ---~Pvl~~~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 207 ---ATILTDDMVEPGMHINAVGGDCPG 230 (346)
T ss_pred ---CceecHHHcCCCcEEEecCCCCCC
Confidence 012667888887754433 35554
No 105
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.64 E-value=0.00012 Score=67.42 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=64.1
Q ss_pred CCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccccc----ccccCCCCccEEEECCC
Q 012866 298 GSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED----ILNFQPEKGAILANATP 372 (454)
Q Consensus 298 ~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~----l~~~~~~~~divInat~ 372 (454)
+.+++||+|+|||-+ -.|+.++.-|.+.|+.|++++.+...-..-.........+..+ +.+ ...++||||.|++
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~-~~~~ADIVIsAvG 135 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLD-CLSQSDVVITGVP 135 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHH-HhhhCCEEEEccC
Confidence 357999999999987 5599999999999999999963321100000000000000011 333 4578999998886
Q ss_pred CCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866 373 LGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402 (454)
Q Consensus 373 ~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P 402 (454)
. |. ..+..++++++.+|+|+-.+-
T Consensus 136 ~---~~---~~i~~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 136 S---PN---YKVPTELLKDGAICINFASIK 159 (197)
T ss_pred C---CC---CccCHHHcCCCcEEEEcCCCc
Confidence 4 21 127889999999999998763
No 106
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.64 E-value=0.00035 Score=72.93 Aligned_cols=92 Identities=26% Similarity=0.242 Sum_probs=68.6
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
+..+.||+++|+|.|.+|++++..|..+|++|+++++++.++..... .+....++++ .++.+|+||.+|. . +
T Consensus 249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-~G~~~~~lee----ll~~ADIVI~atG--t-~ 320 (476)
T PTZ00075 249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-EGYQVVTLED----VVETADIFVTATG--N-K 320 (476)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-cCceeccHHH----HHhcCCEEEECCC--c-c
Confidence 46789999999999999999999999999999999999887644322 3444444443 3457899999873 2 1
Q ss_pred CCCCCCCChhc---ccCCcEEEEEecC
Q 012866 378 NTDRVPVSEET---LRDYQLVFDAVYT 401 (454)
Q Consensus 378 ~~~~~~i~~~~---l~~~~~v~D~~y~ 401 (454)
..+..+. ++++.+++++...
T Consensus 321 ----~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 321 ----DIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ----cccCHHHHhccCCCcEEEEcCCC
Confidence 1355444 5788899998766
No 107
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.63 E-value=6.6e-05 Score=74.93 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=74.8
Q ss_pred CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
.+++.|||+|.+|++++..|.+.|. +|++++|+.++.+.+. ..+.......+..+ .+.++|+||.|+|.......-
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~-~~~~aDvViiavp~~~~~~v~ 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVTTSAAE-AVKGADLVILCVPVGASGAVA 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceecCCHHH-HhcCCCEEEECCCHHHHHHHH
Confidence 3689999999999999999999985 8999999988766543 34421111122222 346789999999975432100
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHHH---CCCceeccHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF 425 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~---~G~~~~~Gl~ml 425 (454)
. .+ ...++++.+++|+... ....+++..+ .+..++++-.|.
T Consensus 84 ~-~l-~~~l~~~~iv~dvgs~--k~~~~~~~~~~~~~~~~~v~~hPm~ 127 (307)
T PRK07502 84 A-EI-APHLKPGAIVTDVGSV--KASVIAAMAPHLPEGVHFIPGHPLA 127 (307)
T ss_pred H-HH-HhhCCCCCEEEeCccc--hHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 0 01 1245677889998643 2344454443 355677665554
No 108
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.63 E-value=0.00012 Score=68.60 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
.++++++|+|+|+|.+|...+..|.+.|++|+|++++.. ..++++..-...+. -..+....+.++|+||.||..
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~-~~~~~~~~l~~adlViaaT~d 80 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWK-QKEFEPSDIVDAFLVIAATND 80 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEE-ecCCChhhcCCceEEEEcCCC
Confidence 568899999999999999999999999999999998763 33455443111110 011111135678999998854
No 109
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.62 E-value=0.00013 Score=72.41 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=72.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 384 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i 384 (454)
++.|||.|-+|.+++..|.+.|.+|+++||++++++++.+. +... ..+..+ ...++|+||-++|.... ......
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~-g~~~--~~s~~~-~~~~aDvVi~~vp~~~~--~~~vl~ 76 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK-GATP--AASPAQ-AAAGAEFVITMLPNGDL--VRSVLF 76 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCcc--cCCHHH-HHhcCCEEEEecCCHHH--HHHHHc
Confidence 68999999999999999999999999999999999888664 2221 112222 24568999999885421 001000
Q ss_pred C----hhcccCCcEEEEEecCCCC--CHHHHHHHHCCCc
Q 012866 385 S----EETLRDYQLVFDAVYTPRK--TRLLKDAEAAGAI 417 (454)
Q Consensus 385 ~----~~~l~~~~~v~D~~y~P~~--T~ll~~A~~~G~~ 417 (454)
. ...++++.+++|+.-.+.. ..+.++.+++|+.
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 0 1125677899999876543 3455666677754
No 110
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.61 E-value=9.8e-05 Score=69.20 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=52.8
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcCC--ccc------
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMGA--ARP------ 352 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~~--~~~------ 352 (454)
+++++|+|+|+||.|..++..|+..|+ ++++++++ ..|++.+++.+... .+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 567899999999999999999999999 99999988 45777776666421 111
Q ss_pred -c--ccccccCCCCccEEEECCC
Q 012866 353 -F--EDILNFQPEKGAILANATP 372 (454)
Q Consensus 353 -~--~~l~~~~~~~~divInat~ 372 (454)
+ +++.+ ...++|+||+|+.
T Consensus 99 ~i~~~~~~~-~~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLEL-LINNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHH-HHhCCCEEEECCC
Confidence 1 11222 3567899999874
No 111
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.61 E-value=0.00032 Score=74.21 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=69.8
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccccc-------------------------
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED------------------------- 355 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~------------------------- 355 (454)
..+.+|+|+|+|.+|++++..+..+|++|++++++.++.+ .++.++...+.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 3468999999999999999999999999999999988754 55567764422221
Q ss_pred ccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCC
Q 012866 356 ILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPR 403 (454)
Q Consensus 356 l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~ 403 (454)
+.+ ..+++|++|+|.-+.-.|. +..+.++ .++++.+++|+...+.
T Consensus 241 ~~e-~~~~~DIVI~TalipG~~a--P~Lit~emv~~MKpGsvIVDlA~d~G 288 (511)
T TIGR00561 241 FAA-QAKEVDIIITTALIPGKPA--PKLITEEMVDSMKAGSVIVDLAAEQG 288 (511)
T ss_pred HHH-HhCCCCEEEECcccCCCCC--CeeehHHHHhhCCCCCEEEEeeeCCC
Confidence 112 2467999999884321111 1124444 4678899999988664
No 112
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.59 E-value=0.00014 Score=76.76 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=74.8
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGA----ARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~---~~~----~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
.++-+||-|-||++++..|.+.|++|+|+|||.++++++.+.. |.. ..+.+++.+ .++++|+||-+.+.+-.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~-~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVL-SIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHh-cCCCCCEEEEECCCcHH
Confidence 3699999999999999999999999999999999999998742 221 112333322 34568999988775421
Q ss_pred CCCCCCCCC--hhcccCCcEEEEEecC-CCCCHHH-HHHHHCCCc
Q 012866 377 PNTDRVPVS--EETLRDYQLVFDAVYT-PRKTRLL-KDAEAAGAI 417 (454)
Q Consensus 377 p~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~ll-~~A~~~G~~ 417 (454)
++.. +. ...+.++.+++|..-. |..|.-+ ++++++|+.
T Consensus 86 --V~~V-i~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~ 127 (493)
T PLN02350 86 --VDQT-IKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL 127 (493)
T ss_pred --HHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 1111 11 1235678999999876 5555433 445566654
No 113
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.58 E-value=0.00024 Score=73.58 Aligned_cols=92 Identities=25% Similarity=0.275 Sum_probs=65.8
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+.|++|+|+|.|.+|+.++..|..+|++|+++++++.++...+. .+....++++ ....+|+||.||.. +
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-~G~~v~~l~e----al~~aDVVI~aTG~---~- 278 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-DGFRVMTMEE----AAELGDIFVTATGN---K- 278 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-cCCEecCHHH----HHhCCCEEEECCCC---H-
Confidence 4578999999999999999999999999999999999988755433 2443333332 24578999999842 1
Q ss_pred CCCCCCCh---hcccCCcEEEEEecCC
Q 012866 379 TDRVPVSE---ETLRDYQLVFDAVYTP 402 (454)
Q Consensus 379 ~~~~~i~~---~~l~~~~~v~D~~y~P 402 (454)
..+.. +.++++.+++.+-..+
T Consensus 279 ---~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 279 ---DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ---HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 12332 3456777777776543
No 114
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.57 E-value=9.8e-05 Score=73.44 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=71.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
++.|||.|.+|.+++..|.+.|.+|+++||++++++++.+ .+... .+.+++.+ ...++|+||.++|... .... .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~s~~~~~~-~~~~advVi~~vp~~~--~~~~-v 76 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-LGITARHSLEELVS-KLEAPRTIWVMVPAGE--VTES-V 76 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-CCCeecCCHHHHHH-hCCCCCEEEEEecCch--HHHH-H
Confidence 5889999999999999999999999999999999888754 34322 12233221 1223689999988541 0000 0
Q ss_pred CC--hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCceec
Q 012866 384 VS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIVS 420 (454)
Q Consensus 384 i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~~ 420 (454)
+. ...++++.+++|+.-. |..+ .+.++++++|+.+++
T Consensus 77 ~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 77 IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 11 1235678899999554 5433 344455566765443
No 115
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.57 E-value=0.00015 Score=70.51 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=74.4
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
..+++-.||-|-||.+++..|.+.|++|+||||+.++.+.+.+. |... -+-.++ .+.+|+||.+.|-. .+..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~-Ga~v~~sPaeV----ae~sDvvitmv~~~--~~v~ 106 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEA-GARVANSPAEV----AEDSDVVITMVPNP--KDVK 106 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHh-chhhhCCHHHH----HhhcCEEEEEcCCh--HhhH
Confidence 46889999999999999999999999999999999999998765 3322 222333 34689999766531 1111
Q ss_pred CCCCCh----hcccCCcEE-EEEecC-CC-CCHHHHHHHHCCCcee
Q 012866 381 RVPVSE----ETLRDYQLV-FDAVYT-PR-KTRLLKDAEAAGAIIV 419 (454)
Q Consensus 381 ~~~i~~----~~l~~~~~v-~D~~y~-P~-~T~ll~~A~~~G~~~~ 419 (454)
...+.. +.++++... +|+... |. ...+-++++.+|+..+
T Consensus 107 ~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v 152 (327)
T KOG0409|consen 107 DVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV 152 (327)
T ss_pred HHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE
Confidence 111221 123354444 799876 44 3556667777787654
No 116
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00036 Score=69.94 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=80.3
Q ss_pred CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
-+.+.|||+|..|+.-+.++.. .+. +|.|++|+++.++++++.+... ....++.++ .++++|+||.|||.-.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~-av~~aDiIvt~T~s~~- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEE-AVEGADIVVTATPSTE- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHH-HhhcCCEEEEecCCCC-
Confidence 4689999999999999999886 467 9999999999999999776432 233444444 5778999999998532
Q ss_pred CCCCCCCCChhcccCCcEEEEEe-cCCCCCHHHHHHHHCC-CceeccHH
Q 012866 377 PNTDRVPVSEETLRDYQLVFDAV-YTPRKTRLLKDAEAAG-AIIVSGVE 423 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~~-y~P~~T~ll~~A~~~G-~~~~~Gl~ 423 (454)
| .+..+|++++..+-=+- +.|..+++-.+..++- +.+++=++
T Consensus 208 P-----il~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~~ 251 (330)
T COG2423 208 P-----VLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSLE 251 (330)
T ss_pred C-----eecHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCHH
Confidence 2 36678898876554443 2455555555555544 55555444
No 117
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.56 E-value=0.00055 Score=71.86 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=61.6
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhc---CCccccccccccCCCCccEEEECCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVM---GAARPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~---~~~~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
+++|+++|+|+|++|++++..|++.|++|++++++. +..++..+++. ......+...+ ...++|+||+++..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~d~vv~~~g~--- 78 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE-FLEGVDLVVVSPGV--- 78 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh-HhhcCCEEEECCCC---
Confidence 468999999999999999999999999999999985 33333333331 11111010111 12345666665422
Q ss_pred CCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHH
Q 012866 377 PNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ 428 (454)
Q Consensus 377 p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Q 428 (454)
+..-+.+.+|+++|+.++..++++..+
T Consensus 79 -------------------------~~~~~~~~~a~~~~i~~~~~~~~~~~~ 105 (450)
T PRK14106 79 -------------------------PLDSPPVVQAHKKGIEVIGEVELAYRF 105 (450)
T ss_pred -------------------------CCCCHHHHHHHHCCCcEEeHHHHHHhh
Confidence 123446677777777777666665443
No 118
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.56 E-value=0.00015 Score=71.87 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=74.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
.++.|||.|.+|.+++..|.+.|.+|+++||+.++.+++.+. +... .++..+ ...++|+||.++|.... .....
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-g~~~--~~~~~e-~~~~~d~vi~~vp~~~~--~~~v~ 76 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAA-GAET--ASTAKA-VAEQCDVIITMLPNSPH--VKEVA 76 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEeCCCHHH--HHHHH
Confidence 368999999999999999999999999999999998877542 2211 122222 23568999999985321 01110
Q ss_pred CC----hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCceec
Q 012866 384 VS----EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVS 420 (454)
Q Consensus 384 i~----~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~~ 420 (454)
.. ...++++.+++|+...+..+ .+.+.++++|..+++
T Consensus 77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 10 12346778999998875433 455566667765544
No 119
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.56 E-value=0.0001 Score=74.36 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=83.9
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+.|+++.|||.|.+|++++..|+..|++|+.++|+.+......+ . ..++.+ .++++|+|+.+.|..- .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~-----~--~~~l~e-ll~~aDiVil~lP~t~--~ 211 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT-----Y--KDSVKE-AIKDADIISLHVPANK--E 211 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhh-----c--cCCHHH-HHhcCCEEEEeCCCcH--H
Confidence 4578999999999999999999999999999999999765332111 1 123333 4567999999998642 1
Q ss_pred CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHH
Q 012866 379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFL 426 (454)
Q Consensus 379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv 426 (454)
+. ..+..+ .++++.+++++.-.+. ++.-|.+|-+.|...--|+|.+-
T Consensus 212 t~-~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 212 SY-HLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred HH-HHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 11 123333 3567889999987766 67778888888876666777653
No 120
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.53 E-value=0.00051 Score=73.07 Aligned_cols=96 Identities=27% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
+.+++|+|+|.|++|++++..|...|++|+++++..++.+.+ +..+.....-....+ .+.++|+||.+..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~-~l~~~D~VV~SpG-------- 79 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQ-QIADYALVVTSPG-------- 79 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHh-HhhcCCEEEECCC--------
Confidence 467899999999999999999999999999999876654432 333322111000001 1223455553221
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 426 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv 426 (454)
-|...|.+++|+++|++++.-++++.
T Consensus 80 --------------------i~~~~p~~~~a~~~gi~v~~~iel~~ 105 (488)
T PRK03369 80 --------------------FRPTAPVLAAAAAAGVPIWGDVELAW 105 (488)
T ss_pred --------------------CCCCCHHHHHHHHCCCcEeeHHHHhh
Confidence 13356778999999999988888753
No 121
>PRK08328 hypothetical protein; Provisional
Probab=97.53 E-value=0.00012 Score=70.13 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=36.6
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLA 343 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la 343 (454)
+++++|+|+|+||.|..++..|+..|+ +++|++.+.-....|-
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLN 68 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhc
Confidence 457899999999999999999999999 9999998765544443
No 122
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.51 E-value=0.00021 Score=70.11 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=75.2
Q ss_pred CceEEEEccchhHHHHHHHHHHC--CCeE-EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSR--GARV-VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~--G~~v-~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
..++.|||.|.+|+.++..|... ++++ .+++|++++++++++.++.. ..+++++ ..+.|+|+.|+|.....
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel----l~~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL----ATHADIVVEAAPASVLR 81 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH----hcCCCEEEECCCcHHHH
Confidence 46899999999999999999863 6665 48999999999999988742 2234444 34689999999865321
Q ss_pred CCCCCCCChhcccCCcEEEEEecC-C-CCCHHHHHHHHCCCce
Q 012866 378 NTDRVPVSEETLRDYQLVFDAVYT-P-RKTRLLKDAEAAGAII 418 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~y~-P-~~T~ll~~A~~~G~~~ 418 (454)
.+....++.+.-++...-. . ..-.+.+.|++.|.++
T Consensus 82 -----e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 82 -----AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred -----HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 1234456666555554322 1 1356778889999875
No 123
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.49 E-value=0.00098 Score=70.66 Aligned_cols=98 Identities=28% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCcccc--ccccccCCCCccEEEECCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPF--EDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~~~~--~~l~~~~~~~~divInat~~g~ 375 (454)
..+++++|+|+|+|++|++++..|.++|++|+++++.. +.+..+.+.+...-+.+ .+-.. ....+|+||-+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s----- 85 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTS----- 85 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEEC-----
Confidence 45678999999999999999999999999999998654 33333333321110000 00000 00112333321
Q ss_pred CCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
.- -|..+|+++.|+++|+++++..+.+
T Consensus 86 ----------------------~G-i~~~~~~~~~a~~~gi~v~~~~e~~ 112 (480)
T PRK01438 86 ----------------------PG-WRPDAPLLAAAADAGIPVWGEVELA 112 (480)
T ss_pred ----------------------CC-cCCCCHHHHHHHHCCCeecchHHHH
Confidence 11 1346788899999999999888864
No 124
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.47 E-value=0.00027 Score=70.42 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=48.4
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+.||++.|+|.|.+|++++..|+..|++|..++|+.... +... ...++++ .+.++|+|+.+.|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~-~~~~l~e-ll~~aDiv~~~lp~t 184 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------GISS-IYMEPED-IMKKSDFVLISLPLT 184 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------Cccc-ccCCHHH-HHhhCCEEEECCCCC
Confidence 35789999999999999999999999999999999984321 1110 0123333 345678888888753
No 125
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.47 E-value=8.7e-05 Score=74.21 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=49.4
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..++++++.|+|.|.+|+.++..|...|++|..++|+.++..... . ..+.+++.+ .++++|+|+.+.|.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~-~----~~~~~~l~e-~l~~aDvvv~~lPl 200 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ-S----FAGREELSA-FLSQTRVLINLLPN 200 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce-e----ecccccHHH-HHhcCCEEEECCCC
Confidence 357899999999999999999999999999999999765421110 0 012233433 35567888877775
No 126
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.46 E-value=0.00057 Score=71.73 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=34.2
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
+++|+++|+|.|++|++++..|++.|++|++++++...
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~ 40 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS 40 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc
Confidence 46889999999999999999999999999999987544
No 127
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.45 E-value=7e-05 Score=78.41 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=74.9
Q ss_pred eEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 305 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 305 ~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
++.|+| .|++|++++..|.+.|.+|++++|+.+++++++.+++... ..+..+ .+.++|+||.|+|...... .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~--~~~~~e-~~~~aDvVIlavp~~~~~~----v 74 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY--ANDNID-AAKDADIVIISVPINVTED----V 74 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee--ccCHHH-HhccCCEEEEecCHHHHHH----H
Confidence 589998 7999999999999999999999999998888888776532 122222 3457899999998643211 1
Q ss_pred CC--hhcccCCcEEEEEecC-CCCCHHHHHHHHCCCceeccHHH
Q 012866 384 VS--EETLRDYQLVFDAVYT-PRKTRLLKDAEAAGAIIVSGVEM 424 (454)
Q Consensus 384 i~--~~~l~~~~~v~D~~y~-P~~T~ll~~A~~~G~~~~~Gl~m 424 (454)
+. ...++++.+++|+.-. +.....+++....|..++.+-.|
T Consensus 75 l~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPm 118 (437)
T PRK08655 75 IKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPM 118 (437)
T ss_pred HHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCC
Confidence 11 1235678899999853 21222222222235666665544
No 128
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.44 E-value=0.0002 Score=72.24 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=82.4
Q ss_pred CCCCCceEEEEccchhHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L-~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
..+.|+++.|||.|.+|++++..| ...|++|+.++|+..+... .. ... ..++.+ .+.++|+|+.++|..-.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~-~~~--~~~l~e-ll~~aDvIvl~lP~t~~- 213 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---TY-VDY--KDTIEE-AVEGADIVTLHMPATKY- 213 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---hh-ccc--cCCHHH-HHHhCCEEEEeCCCCcc-
Confidence 457899999999999999999999 4578899999998654311 11 111 123433 35679999999986422
Q ss_pred CCCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866 378 NTDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 378 ~~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
+ ...+.. +.++++.+++++.-.+. +|.-+..|-+.|...--|++.+
T Consensus 214 -t-~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 263 (332)
T PRK08605 214 -N-HYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTY 263 (332)
T ss_pred -h-hhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence 1 123443 34678899999988754 7888888888887666666665
No 129
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.43 E-value=0.00032 Score=70.22 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=75.8
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+.||++.|||.|.+|++++..++..|++|..++|+.... ..+. ...++++ .++++|+|+.+.|.. |.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~---~~~~l~e-ll~~sDvv~lh~Plt--~~ 209 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEY---ERVSLEE-LLKTSDIISIHAPLN--EK 209 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCc---eeecHHH-HhhcCCEEEEeCCCC--ch
Confidence 35789999999999999999999999999999999974221 1111 2223444 456789999988864 32
Q ss_pred CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866 379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
+ .-.|+.+ .++++.+++.+.-.+. ++.-|-+|-+.|... -|+|.+
T Consensus 210 T-~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 210 T-KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred h-hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 2 2235543 3456666666665554 555566666666555 666654
No 130
>PRK07574 formate dehydrogenase; Provisional
Probab=97.43 E-value=0.00018 Score=73.90 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..+.|+++.|||.|.+|++++..|+..|++|..++|+... .+....++... ..++++ .++.+|+|+.+.|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~-~~~~~~~g~~~--~~~l~e-ll~~aDvV~l~lPl 258 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLP-EEVEQELGLTY--HVSFDS-LVSVCDVVTIHCPL 258 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCc-hhhHhhcCcee--cCCHHH-HhhcCCEEEEcCCC
Confidence 4578999999999999999999999999999999998632 22223333221 123333 34668888888875
No 131
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.42 E-value=0.00027 Score=63.17 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=52.0
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
+++|++.|||.|.-|++-+..|.+.|++|+|..|+.++..+.|++-|.+..++++. .+.+|+|+..+|-
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eA----v~~aDvV~~L~PD 70 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEA----VKKADVVMLLLPD 70 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHH----HHC-SEEEE-S-H
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHH----HhhCCEEEEeCCh
Confidence 46899999999999999999999999999999999988888888877666555543 3568999998874
No 132
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.42 E-value=0.00019 Score=73.76 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=52.8
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--Ccccc---c-
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMG--AARPF---E- 354 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~--~~~~~---~- 354 (454)
+++++|+|+|+||.|..++..|+..|+ +|++++++ ..|++.+++.+.. ..+.+ .
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 346889999999999999999999999 99999998 5678877776632 11111 1
Q ss_pred -----cccccCCCCccEEEECCC
Q 012866 355 -----DILNFQPEKGAILANATP 372 (454)
Q Consensus 355 -----~l~~~~~~~~divInat~ 372 (454)
++.+ .+.++|+||+||-
T Consensus 213 ~~~~~~~~~-~~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEA-LLQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHH-HHhCCCEEEECCC
Confidence 1111 2467999999984
No 133
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.41 E-value=0.0027 Score=60.59 Aligned_cols=131 Identities=20% Similarity=0.230 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHH
Q 012866 273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS 341 (454)
Q Consensus 273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~~ 341 (454)
-+.|...+++..+... +..+++++++|.|.|.+|+.++..|.+.|++|+ |.+. +.++..+
T Consensus 10 Tg~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 10 TGRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred chHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 3578888887766521 246889999999999999999999999999776 7777 6677666
Q ss_pred HHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCCHHHHHHH
Q 012866 342 LASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTRLLKDAE 412 (454)
Q Consensus 342 la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~ll~~A~ 412 (454)
..++.+.. .++.+++- ..++|++|-|+.-+. +..+... ..++|+.-.-+|....--+.-+
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~---~~~~Dvlip~a~~~~--------i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~ 149 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELL---ELDCDILIPAALENQ--------ITADNADRIKAKIIVEAANGPTTPEADEILH 149 (227)
T ss_pred HHHhcCCcccCCCceecCCccce---eecccEEEecCccCc--------cCHHHHhhceeeEEEeCCCCCCCHHHHHHHH
Confidence 65655421 11222222 236899999886443 2222211 2467888887776433334445
Q ss_pred HCCCceeccHH
Q 012866 413 AAGAIIVSGVE 423 (454)
Q Consensus 413 ~~G~~~~~Gl~ 423 (454)
++|+.+++..-
T Consensus 150 ~rGi~~~PD~~ 160 (227)
T cd01076 150 ERGVLVVPDIL 160 (227)
T ss_pred HCCCEEEChHH
Confidence 68887765543
No 134
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.41 E-value=0.00027 Score=63.42 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=50.4
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Ccc----------ccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AAR----------PFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~~----------~~~~l~~~~~~~~divInat~~ 373 (454)
||.|+|+|..|.|++..|+..|.+|++|.|+.+..+.+-+.-.. ... -..++++ .++++|+||-++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~-a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEE-ALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHH-HHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHH-HhCcccEEEecccH
Confidence 58999999999999999999999999999999988888654321 110 1123433 45789999999986
Q ss_pred C
Q 012866 374 G 374 (454)
Q Consensus 374 g 374 (454)
-
T Consensus 80 ~ 80 (157)
T PF01210_consen 80 Q 80 (157)
T ss_dssp G
T ss_pred H
Confidence 3
No 135
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.39 E-value=0.00037 Score=69.88 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..++++++.|||.|.+|++++..|...|++|.+++|+.++..+.++..+....+.+ + ..+++|+|+.++|.
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~---e-aa~~ADVVvLaVPd 83 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVA---E-AAKWADVIMILLPD 83 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHH---H-HHhcCCEEEEcCCH
Confidence 35788999999999999999999999999999999987777777776665433322 2 24567888888774
No 136
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.38 E-value=0.00032 Score=69.06 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=82.5
Q ss_pred ceEEEEccchhHHHHHHHHHHCC----CeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~-~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
.++.+||+|.+|.+++..|.+.| .+|+++||+. ++++.++..++.... .+..+ ...++|+||-|++......
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~--~~~~e-~~~~aDvVilav~p~~~~~ 80 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT--HNKKE-LLTDANILFLAMKPKDVAE 80 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe--CCHHH-HHhcCCEEEEEeCHHHHHH
Confidence 47999999999999999999988 4899999986 477888887765321 22222 2456899999998543221
Q ss_pred CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcC
Q 012866 379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 438 (454)
Q Consensus 379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g 438 (454)
.- ..+ ...+.++.+++|+.-.= ....+++....+++++.+..+.-.+....+-.|.+
T Consensus 81 vl-~~l-~~~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 81 AL-IPF-KEYIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HH-HHH-HhhcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 00 001 12355678999984331 22334444445667777766655544455556643
No 137
>PLN03139 formate dehydrogenase; Provisional
Probab=97.37 E-value=0.00022 Score=73.16 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=51.5
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..+.||++.|||.|.+|++++..|+..|++|..++|+....+ .....+... .+++++ .+.++|+|+.+.|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~-~~~~~g~~~--~~~l~e-ll~~sDvV~l~lPl 265 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE-LEKETGAKF--EEDLDA-MLPKCDVVVINTPL 265 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh-hHhhcCcee--cCCHHH-HHhhCCEEEEeCCC
Confidence 468999999999999999999999999999999999853322 223333222 123433 34568888888874
No 138
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.37 E-value=0.00051 Score=71.03 Aligned_cols=70 Identities=27% Similarity=0.350 Sum_probs=55.5
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
+..+.|++|+|+|+|.+|+.++..++..|++|+++++++.|++ .|..+|......+ + .+..+|+||.||.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~-~A~~~G~~~~~~~---e-~v~~aDVVI~atG 266 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL-QAAMEGYEVMTME---E-AVKEGDIFVTTTG 266 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH-HHHhcCCEEccHH---H-HHcCCCEEEECCC
Confidence 3557899999999999999999999999999999999988865 4566665443333 2 2356899999885
No 139
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.36 E-value=0.00038 Score=62.58 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
..+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+ ..+++.+ ++........+.+..+.++|+||.||.
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-ccCcEEEecccChhcCCCceEEEECCC
Confidence 35689999999999999999999999999999999644 3344433 221111112222223567899999885
No 140
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.35 E-value=0.0003 Score=69.29 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=74.4
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 384 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i 384 (454)
+|.|||.|-+|.+++.+|.+.|.+|++++|+.++.+++.+. +.......+. + ...++|+||.|+|...... .+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~-~~~~aDlVilavp~~~~~~----~~ 74 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER-GLVDEASTDL-S-LLKDCDLVILALPIGLLLP----PS 74 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCcccccCCH-h-HhcCCCEEEEcCCHHHHHH----HH
Confidence 58899999999999999999999999999998887766543 2211111111 2 2467899999998643211 01
Q ss_pred C--hhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866 385 S--EETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 385 ~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
. ...++++.++.|+...+ ...++++.+.+..++.+-.|.
T Consensus 75 ~~l~~~l~~~~ii~d~~Svk--~~~~~~~~~~~~~~v~~HPm~ 115 (279)
T PRK07417 75 EQLIPALPPEAIVTDVGSVK--APIVEAWEKLHPRFVGSHPMA 115 (279)
T ss_pred HHHHHhCCCCcEEEeCcchH--HHHHHHHHHhhCCceeeCCcC
Confidence 1 12356778999987653 445677766655555544443
No 141
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.35 E-value=0.00034 Score=70.79 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=52.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH---------------------HHHHHHHHHhcC---Cc-----
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF---------------------ERAKSLASDVMG---AA----- 350 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~---------------------~~a~~la~~~~~---~~----- 350 (454)
+++++|+|+|+||.|..++..|+..|+ +|+|++++. .|++.+++.+.. ..
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 567899999999999999999999999 999999974 366666555532 11
Q ss_pred ---cccccccccCCCCccEEEECCC
Q 012866 351 ---RPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 351 ---~~~~~l~~~~~~~~divInat~ 372 (454)
.+.+++.+ .+.++|+||+||-
T Consensus 102 ~~~~~~~~~~~-~~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEE-LVKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHH-HhcCCCEEEEcCC
Confidence 01112233 3577999999984
No 142
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.33 E-value=0.00055 Score=70.04 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=49.1
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
+..+.||++.|||.|.+|++++..|...|++|..+++..... +. ...+.++++ .+.++|+|+..+|+.
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-------~~-~~~~~~L~e-ll~~sDiI~lh~PLt 178 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-------GD-EGDFRSLDE-LVQEADILTFHTPLF 178 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-------cc-ccccCCHHH-HHhhCCEEEEeCCCC
Confidence 467899999999999999999999999999999999753211 00 011223333 345678888888764
No 143
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.33 E-value=0.00063 Score=64.67 Aligned_cols=72 Identities=32% Similarity=0.405 Sum_probs=56.4
Q ss_pred CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-C--c--ccccc----------ccccCCCCc
Q 012866 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-A--A--RPFED----------ILNFQPEKG 364 (454)
Q Consensus 301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~--~--~~~~~----------l~~~~~~~~ 364 (454)
+++|.++|.||+ |.|.|++..|.+.|++|.+..|..++.++|+.+++. . + .++.+ +.+ ...+.
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~-~~g~i 82 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPE-EFGRI 82 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHH-hhCcc
Confidence 456889999985 999999999999999999999999999999999983 2 1 12211 112 23568
Q ss_pred cEEEECCCC
Q 012866 365 AILANATPL 373 (454)
Q Consensus 365 divInat~~ 373 (454)
|++||...+
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999997643
No 144
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.33 E-value=0.00048 Score=69.12 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=51.4
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
+.+++||++.|+|.|.+|++++..++..|++|..++|+.. .+..++++..+.++++ .++++|+|+...|..
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~~l~e----ll~~sDii~l~~Plt 211 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYVDLDE----LLAESDIISLHCPLT 211 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceeccHHH----HHHhCCEEEEeCCCC
Confidence 3568899999999999999999999988889999999864 2222333333333333 245677777777754
No 145
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.31 E-value=0.00037 Score=67.68 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=66.4
Q ss_pred eEEEEccchhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA---RVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~---~v~i~nRt~~~a~~la~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
++.|||+|.+|++++..|.+.|. .+.+++|+.++++++++.++ ... .++..+ ...++|+||-|++......
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~--~~~~~~-~~~~aDvVilav~p~~~~~-- 76 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI--AKDNQA-VVDRSDVVFLAVRPQIAEE-- 76 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE--eCCHHH-HHHhCCEEEEEeCHHHHHH--
Confidence 58899999999999999998884 47899999999999988774 222 122222 2346899999998432111
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA 413 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~ 413 (454)
.+..-.+.++.++++++ .+.....++....
T Consensus 77 --vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~ 106 (258)
T PRK06476 77 --VLRALRFRPGQTVISVI-AATDRAALLEWIG 106 (258)
T ss_pred --HHHHhccCCCCEEEEEC-CCCCHHHHHHHhC
Confidence 01111234566777765 4555555555443
No 146
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.31 E-value=0.00097 Score=70.74 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=68.0
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc--c-----------c-----------
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE--D-----------I----------- 356 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~--~-----------l----------- 356 (454)
..+.+|+|+|+|.+|..++..++.+|++|+++++++++.+ .++.+|.....++ + +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 4578999999999999999999999999999999998865 5666776532111 0 0
Q ss_pred -cccCCCCccEEEECCCCCCCCCCCCCCCCh---hcccCCcEEEEEecC
Q 012866 357 -LNFQPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDAVYT 401 (454)
Q Consensus 357 -~~~~~~~~divInat~~g~~p~~~~~~i~~---~~l~~~~~v~D~~y~ 401 (454)
.+ ...++|++|+|+...-.+. +..+.+ +.++++.+++|+...
T Consensus 242 ~~~-~~~gaDVVIetag~pg~~a--P~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 242 FAE-QAKEVDIIITTALIPGKPA--PKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHh-ccCCCCEEEECCCCCcccC--cchHHHHHHHhcCCCCEEEEEccC
Confidence 01 1246999999996522111 112223 346788999999874
No 147
>PLN02256 arogenate dehydrogenase
Probab=97.30 E-value=0.00035 Score=69.67 Aligned_cols=118 Identities=18% Similarity=0.100 Sum_probs=74.2
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
-++.++.|||.|.+|.+++..|.+.|.+|++++|+.. .+.+..++... ..+..+....++|+||.|+|.......-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~gv~~--~~~~~e~~~~~aDvVilavp~~~~~~vl 109 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELGVSF--FRDPDDFCEEHPDVVLLCTSILSTEAVL 109 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcCCee--eCCHHHHhhCCCCEEEEecCHHHHHHHH
Confidence 3567899999999999999999999999999999964 34555555432 2233221113589999999965322100
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHHHC---CCceeccHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA---GAIIVSGVEMF 425 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~---G~~~~~Gl~ml 425 (454)
. .+....++++.+++|+.-. ....++..++. ++.++.+-.|+
T Consensus 110 ~-~l~~~~l~~~~iviDv~Sv--K~~~~~~~~~~l~~~~~~V~~HPma 154 (304)
T PLN02256 110 R-SLPLQRLKRSTLFVDVLSV--KEFPKNLLLQVLPEEFDILCTHPMF 154 (304)
T ss_pred H-hhhhhccCCCCEEEecCCc--hHHHHHHHHHhCCCCCeEEecCCCC
Confidence 0 0111235678899999863 23344555542 44455555544
No 148
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.29 E-value=0.00027 Score=74.47 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=72.9
Q ss_pred EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-C-Cc---cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-G-AA---RPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 306 vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~-~~---~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
+.|||.|-||.+++..|.+.|++|+++||+.++++++.+... . .. .+.+++.+ .+.++|+||-+.|.+-. ++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~-~l~~~dvIil~v~~~~~--v~ 78 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQ-SLERPRKIMLMVKAGAP--VD 78 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHh-hcCCCCEEEEECCCcHH--HH
Confidence 679999999999999999999999999999999999987632 1 11 12233322 24567988888876421 11
Q ss_pred CCCCC--hhcccCCcEEEEEec-CCCCCH-HHHHHHHCCCce
Q 012866 381 RVPVS--EETLRDYQLVFDAVY-TPRKTR-LLKDAEAAGAII 418 (454)
Q Consensus 381 ~~~i~--~~~l~~~~~v~D~~y-~P~~T~-ll~~A~~~G~~~ 418 (454)
. .+. ...+.++.+++|..- .|.+|. ..++.+++|+.+
T Consensus 79 ~-Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~f 119 (467)
T TIGR00873 79 A-VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119 (467)
T ss_pred H-HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEE
Confidence 1 111 123567889999975 455543 344555666543
No 149
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00059 Score=68.49 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=83.3
Q ss_pred CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEe--CCCCe----EEEeeccHHH-----HHHH
Q 012866 212 DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRR--PSDGK----LIGYNTDCEA-----SITA 280 (454)
Q Consensus 212 ~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~--~~~g~----l~G~NTD~~G-----~~~~ 280 (454)
+.++..+.+++.++... ...|..++++..+..+--.++.-.-||.|-.. ...|- --|.|+...+ .+-+
T Consensus 35 ~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~ 113 (324)
T COG0111 35 DEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLA 113 (324)
T ss_pred chHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHH
Confidence 33445566666666666 55666677776655444444444444444211 00110 1234555443 2222
Q ss_pred HHHHHHhcC---CCCCCC---CCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc
Q 012866 281 IEDAIKERG---YKNGTA---SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354 (454)
Q Consensus 281 l~~~l~~~~---~~~~~~---~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~ 354 (454)
+-+.+.... ..+.|. ..+..+.||++.|||.|..|+.++..|+..|++|..+++...+...-.. + ....+
T Consensus 114 ~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--~--~~~~~ 189 (324)
T COG0111 114 LARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--G--VVGVD 189 (324)
T ss_pred HhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--c--ceecc
Confidence 211110000 011121 2345678999999999999999999999999999999994444211100 1 11223
Q ss_pred cccccCCCCccEEEECCCC
Q 012866 355 DILNFQPEKGAILANATPL 373 (454)
Q Consensus 355 ~l~~~~~~~~divInat~~ 373 (454)
++++ .+.++|+|+..+|.
T Consensus 190 ~Ld~-lL~~sDiv~lh~Pl 207 (324)
T COG0111 190 SLDE-LLAEADILTLHLPL 207 (324)
T ss_pred cHHH-HHhhCCEEEEcCCC
Confidence 3433 34567777777765
No 150
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.27 E-value=0.00057 Score=70.06 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=35.6
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+..+.||++.|||.|.+|+.++..|...|++|.++++..
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~ 149 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR 149 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence 356889999999999999999999999999999999754
No 151
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.27 E-value=0.00067 Score=68.22 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=49.1
Q ss_pred CCCCCceEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~-~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+.||++.|||.|.+|++++..|+ ..|++|..++|...... ...++....++++ .++++|+|+.+.|..
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~--~~~~~~~~~~l~e----ll~~sDvv~lh~plt 211 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA--EERFNARYCDLDT----LLQESDFVCIILPLT 211 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh--HHhcCcEecCHHH----HHHhCCEEEEeCCCC
Confidence 4578999999999999999999997 88999999998743211 1233333223333 345678888877753
No 152
>PLN02494 adenosylhomocysteinase
Probab=97.24 E-value=0.00091 Score=69.78 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=62.6
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+.|++++|+|.|.+|+.++..+..+|++|+++++++.++... ...+....++++ .+..+|++|.||..-
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv~leE----al~~ADVVI~tTGt~---- 320 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVLTLED----VVSEADIFVTTTGNK---- 320 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeeccHHH----HHhhCCEEEECCCCc----
Confidence 45789999999999999999999999999999999998775432 223333333332 245689999877521
Q ss_pred CCCCCCCh---hcccCCcEEEEEec
Q 012866 379 TDRVPVSE---ETLRDYQLVFDAVY 400 (454)
Q Consensus 379 ~~~~~i~~---~~l~~~~~v~D~~y 400 (454)
..+.. +.++++.+++.+..
T Consensus 321 ---~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 321 ---DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ---cchHHHHHhcCCCCCEEEEcCC
Confidence 11222 34566777777765
No 153
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.23 E-value=0.00064 Score=68.21 Aligned_cols=64 Identities=25% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..+.||++.|+|.|.+|++++..|+..|++|..++|.... . ..... ++++ .++++|+|+.+.|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~------~~~~~---~l~e-ll~~sDiv~l~lPl 207 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A------RPDRL---PLDE-LLPQVDALTLHCPL 207 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c------ccccc---CHHH-HHHhCCEEEECCCC
Confidence 3578999999999999999999999999999999986321 0 00111 2333 34567777777775
No 154
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.22 E-value=0.0006 Score=63.46 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=61.8
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK-SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 382 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~-~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~ 382 (454)
+++.|+|+|.+|.+++..+...|.+|.|.+|+.+++. .+++.++...... +..+ ..+.+|+||-|.|--..|.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~-~~~d-A~~~aDVVvLAVP~~a~~~---- 75 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGG-SNED-AAALADVVVLAVPFEAIPD---- 75 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccC-ChHH-HHhcCCEEEEeccHHHHHh----
Confidence 4689999999999999999999999999977666544 4455555443222 2222 3466899999998644332
Q ss_pred CCChhcc--cCCcEEEEEecCC
Q 012866 383 PVSEETL--RDYQLVFDAVYTP 402 (454)
Q Consensus 383 ~i~~~~l--~~~~~v~D~~y~P 402 (454)
+..+.. ..+++|+|.. +|
T Consensus 76 -v~~~l~~~~~~KIvID~t-np 95 (211)
T COG2085 76 -VLAELRDALGGKIVIDAT-NP 95 (211)
T ss_pred -HHHHHHHHhCCeEEEecC-CC
Confidence 222221 2368999986 45
No 155
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.22 E-value=0.0074 Score=57.16 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH----------HHHHHH
Q 012866 274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF----------ERAKSL 342 (454)
Q Consensus 274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~----------~~a~~l 342 (454)
+.|...+++..+.+. +.++++++++|.|.|..|+.++..|.++|. .|.|.+.+. +..+..
T Consensus 3 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~ 73 (217)
T cd05211 3 GYGVVVAMKAAMKHL---------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYA 73 (217)
T ss_pred hhHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHH
Confidence 567777777766522 246889999999999999999999999999 678888776 544433
Q ss_pred HHHhcCCcccc-ccc--cccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee
Q 012866 343 ASDVMGAARPF-EDI--LNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV 419 (454)
Q Consensus 343 a~~~~~~~~~~-~~l--~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~ 419 (454)
.+..+....+- +.+ .++...++|++|-|+.-+... ..+ ...+ ..++|+.-.-+|....--+.-+++|..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~---~~~--a~~l-~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~ 147 (217)
T cd05211 74 VALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVID---LEN--AKKL-KAKVVAEGANNPTTDEALRILHERGIVVA 147 (217)
T ss_pred HhhCCccccCcccccCcccceeccccEEeeccccCccC---hhh--Hhhc-CccEEEeCCCCCCCHHHHHHHHHCCcEEE
Confidence 33322211111 001 111123689999888754321 111 1112 24678888777754333334456888777
Q ss_pred ccHHHHHH
Q 012866 420 SGVEMFLR 427 (454)
Q Consensus 420 ~Gl~mlv~ 427 (454)
+..-+-..
T Consensus 148 Pd~~~NaG 155 (217)
T cd05211 148 PDIVANAG 155 (217)
T ss_pred ChHHhcCC
Confidence 77665433
No 156
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.22 E-value=0.00069 Score=65.08 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=53.1
Q ss_pred CceEEEEccchhHHHHHHHHHHCC---C-eEEEEeC-CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRG---A-RVVIFDI-DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G---~-~v~i~nR-t~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~ 375 (454)
+.++.|||+|.+|++++..|.+.| . +|++++| +.++++++++.++... ..+..+ .+.++|+||.|+|...
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~DiViiavp~~~ 78 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST--TTDWKQ-HVTSVDTIVLAMPPSA 78 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE--eCChHH-HHhcCCEEEEecCHHH
Confidence 467999999999999999998876 3 3888998 4788999988776432 123333 2457899999998654
No 157
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.21 E-value=0.00064 Score=64.21 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=32.9
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||+|..++..|+..|+ ++++++.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999999999999999999999 89999987
No 158
>PLN02712 arogenate dehydrogenase
Probab=97.20 E-value=0.00055 Score=75.27 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=75.3
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
.+..++.|||.|.+|++++.+|.+.|.+|++++|+..+ +.+.+++... ..+..+....++|+||-|+|.......-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~--~~A~~~Gv~~--~~d~~e~~~~~aDvViLavP~~~~~~vl 125 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS--LAARSLGVSF--FLDPHDLCERHPDVILLCTSIISTENVL 125 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHcCCEE--eCCHHHHhhcCCCEEEEcCCHHHHHHHH
Confidence 34578999999999999999999999999999998554 3455665432 2222221224589999999965322110
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHHH---CCCceeccHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF 425 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~---~G~~~~~Gl~ml 425 (454)
. .+....++++.+++|+.- .....++..++ .|+.++.+-.|+
T Consensus 126 ~-~l~~~~l~~g~iVvDv~S--vK~~~~~~l~~~l~~~~~~v~~HPMa 170 (667)
T PLN02712 126 K-SLPLQRLKRNTLFVDVLS--VKEFAKNLLLDYLPEDFDIICSHPMF 170 (667)
T ss_pred H-hhhhhcCCCCeEEEECCC--CcHHHHHHHHHhcCCCCeEEeeCCcC
Confidence 0 111123567889999963 34444444443 355666666665
No 159
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.20 E-value=0.00071 Score=72.57 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=50.8
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+.||++.|+|.|.+|+.++..|+..|++|..++|+..... +..++.... ++.+ .++++|+|+.+.|..
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~--~~~~g~~~~---~l~e-ll~~aDiV~l~lP~t 205 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER--AAQLGVELV---SLDE-LLARADFITLHTPLT 205 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCCEEE---cHHH-HHhhCCEEEEccCCC
Confidence 357899999999999999999999999999999999643221 223333222 3333 345688888888864
No 160
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.20 E-value=0.00055 Score=66.91 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=72.1
Q ss_pred eEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
++.|||.|.+|+.++.++.+. +++ +.+++|+.++++++++.++... +.++++ .+.+.|+|+.|++.....
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~--~~~~~e-ll~~~DvVvi~a~~~~~~---- 75 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKA--CLSIDE-LVEDVDLVVECASVNAVE---- 75 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCee--ECCHHH-HhcCCCEEEEcCChHHHH----
Confidence 689999999999999999876 454 7799999999999988776432 233433 235789999998754321
Q ss_pred CCCChhcccCCcEEEEEec----CC-CCCHHHHHHHHCCCc
Q 012866 382 VPVSEETLRDYQLVFDAVY----TP-RKTRLLKDAEAAGAI 417 (454)
Q Consensus 382 ~~i~~~~l~~~~~v~D~~y----~P-~~T~ll~~A~~~G~~ 417 (454)
.+-...++.+.-++.+.- .+ ....+.+.|++.|.+
T Consensus 76 -~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 76 -EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred -HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 122345555554555432 11 234777889999976
No 161
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.18 E-value=0.00073 Score=67.68 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=47.8
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+.||++.|+|.|.+||+++..|+.+|++|..++|.... .... .+.++++ .+.++|+|+.+.|..
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~------~~~~---~~~~l~e-ll~~sDiv~l~~Plt 208 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS------VCRE---GYTPFEE-VLKQADIVTLHCPLT 208 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc------cccc---ccCCHHH-HHHhCCEEEEcCCCC
Confidence 3578999999999999999999999999999999886421 0111 1223333 345678888888753
No 162
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.18 E-value=0.00076 Score=67.06 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=54.0
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..+++|++.|||.|.+|++++..|...|++|.+++|. .++.+.+...+....+++ + ..+++|+|+...|.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~---E-aak~ADVV~llLPd 81 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVS---E-AVRTAQVVQMLLPD 81 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHH---H-HHhcCCEEEEeCCC
Confidence 3578999999999999999999999999999999986 455555555554433333 3 34578999988884
No 163
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.17 E-value=0.0011 Score=71.17 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
..+.||++.|+|.|.+|++++..|+..|++|..++|..... .+.+++.... +++.+ .+.++|+|+.+.|..
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvV~l~lPlt 204 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPE--RAEQLGVELV--DDLDE-LLARADFITVHTPLT 204 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEEc--CCHHH-HHhhCCEEEEccCCC
Confidence 45789999999999999999999999999999999853221 1233333221 23333 345789988888854
No 164
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.16 E-value=0.00079 Score=55.98 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=44.9
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
.++++++|||+|+|..|..-+..|.+.|++|+|++++.+..+ +.+. ..-.++++ .+.++++|+.||.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~---~~i~---~~~~~~~~-~l~~~~lV~~at~ 69 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE---GLIQ---LIRREFEE-DLDGADLVFAATD 69 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH---TSCE---EEESS-GG-GCTTESEEEE-SS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh---hHHH---HHhhhHHH-HHhhheEEEecCC
Confidence 357899999999999999999999999999999999972212 1111 01112222 3567899998885
No 165
>PLN02306 hydroxypyruvate reductase
Probab=97.16 E-value=0.00092 Score=68.75 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCCCceEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHHhcC----------CccccccccccCCCCccE
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERA-KSLASDVMG----------AARPFEDILNFQPEKGAI 366 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~-~~G~~v~i~nRt~~~a-~~la~~~~~----------~~~~~~~l~~~~~~~~di 366 (454)
..+.||++.|||.|.+|++++..|. .+|++|..++|+.... +.....++. ......++++ .+.++|+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~e-ll~~sDi 239 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEE-VLREADV 239 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHH-HHhhCCE
Confidence 4578999999999999999999985 8899999999976421 211122221 0001124444 4567899
Q ss_pred EEECCCCC
Q 012866 367 LANATPLG 374 (454)
Q Consensus 367 vInat~~g 374 (454)
|+.++|..
T Consensus 240 V~lh~Plt 247 (386)
T PLN02306 240 ISLHPVLD 247 (386)
T ss_pred EEEeCCCC
Confidence 99988863
No 166
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.15 E-value=0.0013 Score=60.48 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.1
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la 343 (454)
+|.|||+|-||+.++..++..|++|++++++++..++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence 588999999999999999999999999999998765543
No 167
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.14 E-value=0.0011 Score=68.36 Aligned_cols=92 Identities=27% Similarity=0.299 Sum_probs=65.2
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+.|++|+|+|.|.+|+.++..++.+|++|+++++++.++.... ..+....+.++ .+..+|++|.+|+. +
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~~v~~lee----al~~aDVVItaTG~---~- 261 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGFRVMTMEE----AAKIGDIFITATGN---K- 261 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCCEeCCHHH----HHhcCCEEEECCCC---H-
Confidence 457899999999999999999999999999999999998864433 33443333332 24578999998752 1
Q ss_pred CCCCCCCh---hcccCCcEEEEEecCC
Q 012866 379 TDRVPVSE---ETLRDYQLVFDAVYTP 402 (454)
Q Consensus 379 ~~~~~i~~---~~l~~~~~v~D~~y~P 402 (454)
..+.. ..++++.+++.+...+
T Consensus 262 ---~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 262 ---DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ---HHHHHHHHhcCCCCcEEEEECCCC
Confidence 12333 3456777777666544
No 168
>PLN02712 arogenate dehydrogenase
Probab=97.13 E-value=0.00038 Score=76.51 Aligned_cols=119 Identities=14% Similarity=0.066 Sum_probs=73.5
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..++++++.|||.|.+|++++.+|.+.|.+|++++|+... +.+.+++... ..++.+.....+|+||-|+|......
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~--~~a~~~Gv~~--~~~~~el~~~~aDvVILavP~~~~~~ 440 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS--DEAQKLGVSY--FSDADDLCEEHPEVILLCTSILSTEK 440 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH--HHHHHcCCeE--eCCHHHHHhcCCCEEEECCChHHHHH
Confidence 3457789999999999999999999999999999999643 2344555421 22332211124799999999643221
Q ss_pred CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHH---HCCCceeccHHH
Q 012866 379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE---AAGAIIVSGVEM 424 (454)
Q Consensus 379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~---~~G~~~~~Gl~m 424 (454)
.-. .+....++++.+++|+.-.. +..++.++ ..|..++.+-.|
T Consensus 441 vi~-~l~~~~lk~g~ivvDv~SvK--~~~~~~~~~~l~~~~~~v~~HPm 486 (667)
T PLN02712 441 VLK-SLPFQRLKRSTLFVDVLSVK--EFPRNLFLQHLPQDFDILCTHPM 486 (667)
T ss_pred HHH-HHHHhcCCCCcEEEECCCcc--HHHHHHHHHhccCCCceEeeCCC
Confidence 000 01112356788999997543 22334443 345555533333
No 169
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.13 E-value=0.00065 Score=67.17 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=71.1
Q ss_pred EEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCC-h
Q 012866 308 LAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS-E 386 (454)
Q Consensus 308 ViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~-~ 386 (454)
|||.|-+|.+++..|.+.|.+|++|||+.++.+++.+. +... .++..+ ...++|+||-+.|.... ....... .
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~~-~~~~advVil~vp~~~~--~~~v~~g~~ 74 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA-GAQA--AASPAE-AAEGADRVITMLPAGQH--VISVYSGDE 74 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEeCCChHH--HHHHHcCcc
Confidence 58999999999999999999999999999998887653 3221 122222 34578999999985321 0110000 1
Q ss_pred ---hcccCCcEEEEEecCCC-CCH-HHHHHHHCCCceec
Q 012866 387 ---ETLRDYQLVFDAVYTPR-KTR-LLKDAEAAGAIIVS 420 (454)
Q Consensus 387 ---~~l~~~~~v~D~~y~P~-~T~-ll~~A~~~G~~~~~ 420 (454)
..+.++.+++|+..... .+. +-+.++++|+.+++
T Consensus 75 ~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 75 GILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 23467789999987644 333 33555667876665
No 170
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.13 E-value=0.0008 Score=68.08 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=33.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 336 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~ 336 (454)
+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 567899999999999999999999999 999999873
No 171
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.10 E-value=0.0014 Score=69.15 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=71.7
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCCcccccccccc--CCCCccEEEECCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGAARPFEDILNF--QPEKGAILANATPLGMHPNT 379 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~---~~~~~~~~~l~~~--~~~~~divInat~~g~~p~~ 379 (454)
++.|||.|-||.+++..|++.|++|+++||+.++++++.+.. +.......+++++ .+.++|+||-+.+.+-. +
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~--v 80 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA--V 80 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH--H
Confidence 589999999999999999999999999999999999987642 2111112233221 23357877766554321 0
Q ss_pred CCCCCC--hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCce
Q 012866 380 DRVPVS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAII 418 (454)
Q Consensus 380 ~~~~i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~ 418 (454)
+. .+. ...+.++.+++|..-. |.+| ...++++++|..+
T Consensus 81 ~~-vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 81 DE-TIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILY 122 (470)
T ss_pred HH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence 11 111 1235678999999764 4443 3445666677644
No 172
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.09 E-value=0.00083 Score=66.61 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=70.3
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 384 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i 384 (454)
++.+||.|-||.+++..|.+.|++|+++||++. ++++++ .+... .....+ ...++|+||.+.|-. +.......
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~-~g~~~--~~s~~~-~~~~advVi~~v~~~--~~v~~v~~ 74 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLS-LGAVS--VETARQ-VTEASDIIFIMVPDT--PQVEEVLF 74 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHH-cCCee--cCCHHH-HHhcCCEEEEeCCCh--HHHHHHHc
Confidence 588999999999999999999999999999974 555543 33322 122222 235789999988743 11111111
Q ss_pred Ch----hcccCCcEEEEEecC-CCCCH-HHHHHHHCCCceec
Q 012866 385 SE----ETLRDYQLVFDAVYT-PRKTR-LLKDAEAAGAIIVS 420 (454)
Q Consensus 385 ~~----~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~~~ 420 (454)
.. ..+.++.+++|+.-. |..+. +-+.++++|+.+++
T Consensus 75 ~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 75 GENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred CCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 124567899999865 43333 45666777876554
No 173
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.08 E-value=0.00078 Score=68.65 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=51.7
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhcC--Cccc------
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF-------------------ERAKSLASDVMG--AARP------ 352 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~-------------------~~a~~la~~~~~--~~~~------ 352 (454)
+++++|+|+|+||.|..++..|+..|+ +++|++++. .|++.+++.+.. ..+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 567899999999999999999999999 999999764 466666665532 0111
Q ss_pred ---cccccccCCCCccEEEECCC
Q 012866 353 ---FEDILNFQPEKGAILANATP 372 (454)
Q Consensus 353 ---~~~l~~~~~~~~divInat~ 372 (454)
.++..+ .+.++|+||+|+-
T Consensus 106 ~i~~~~~~~-~~~~~DvVvd~~d 127 (355)
T PRK05597 106 RLTWSNALD-ELRDADVILDGSD 127 (355)
T ss_pred ecCHHHHHH-HHhCCCEEEECCC
Confidence 111122 3567999999983
No 174
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=97.08 E-value=0.013 Score=61.53 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=121.0
Q ss_pred EecCCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchH-----HHHhhhhhcCH
Q 012866 178 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCDEVHP 247 (454)
Q Consensus 178 liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d~~~~ 247 (454)
=+|+--..+.--.|-.++.++.|+++.|.+++-+ ++-..++.| .++...|+.|-.|+-. .|...+|- ..
T Consensus 41 QVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~p-eK 119 (935)
T KOG4230|consen 41 QVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDP-EK 119 (935)
T ss_pred EecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHHHHHHHhccCCCccceEEEeccCccccchhhHhhccCc-cc
Confidence 3465545555556788999999999999998753 444445555 4677999999999752 11111110 00
Q ss_pred hHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCC
Q 012866 248 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRG 326 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G 326 (454)
.+.-.+..|.=.-.+.+|+-+=+-.--.|++..|++. +..+.|++++|+|-. -.|+.+++-|....
T Consensus 120 DVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a-------------~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~N 186 (935)
T KOG4230|consen 120 DVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEA-------------GVFVAGKNAVVLGRSKIVGSPIAALLLWAN 186 (935)
T ss_pred ccccccccchhhhhccCCCceeeccChHHHHHHHHHc-------------CCccccceeEEEecccccCChHHHHHHhcC
Confidence 0111223333110001444445556678888876642 367899999999955 66999999888888
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE--ecCCCC
Q 012866 327 ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA--VYTPRK 404 (454)
Q Consensus 327 ~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~--~y~P~~ 404 (454)
+.|+++--. .+.+++ ...++||||.|+.. |+ .+-.+|++++.+|+|+ +|.|..
T Consensus 187 aTVTiCHSK---T~~lae---------------~v~~ADIvIvAiG~---Pe----fVKgdWiKpGavVIDvGINyvpD~ 241 (935)
T KOG4230|consen 187 ATVTICHSK---TRNLAE---------------KVSRADIVIVAIGQ---PE----FVKGDWIKPGAVVIDVGINYVPDP 241 (935)
T ss_pred ceEEEecCC---CccHHH---------------HhccCCEEEEEcCC---cc----eeecccccCCcEEEEccccccCCC
Confidence 899987532 222222 34568999988853 22 3567899999999997 565654
Q ss_pred C
Q 012866 405 T 405 (454)
Q Consensus 405 T 405 (454)
+
T Consensus 242 ~ 242 (935)
T KOG4230|consen 242 S 242 (935)
T ss_pred C
Confidence 4
No 175
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.07 E-value=0.0012 Score=60.45 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=30.1
Q ss_pred eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 336 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~ 336 (454)
+|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 899999886
No 176
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.07 E-value=0.0012 Score=66.55 Aligned_cols=113 Identities=24% Similarity=0.152 Sum_probs=72.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-------cCC----ccccccccccCCCCccEEEECCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-------MGA----ARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-------~~~----~~~~~~l~~~~~~~~divInat~ 372 (454)
.++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.. +.. ....+++.+ ..+.+|+||-++|
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e-~~~~aD~Vi~~v~ 83 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEE-ALAGADFAVVAVP 83 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHH-HHcCCCEEEEECc
Confidence 4799999999999999999999999999999999988887542 110 111223323 3467899999998
Q ss_pred CCCCCCCCCCCCChhcccCCcEEEEEecC--CCC--CHHHH-HHHH---CCCceeccHH
Q 012866 373 LGMHPNTDRVPVSEETLRDYQLVFDAVYT--PRK--TRLLK-DAEA---AGAIIVSGVE 423 (454)
Q Consensus 373 ~g~~p~~~~~~i~~~~l~~~~~v~D~~y~--P~~--T~ll~-~A~~---~G~~~~~Gl~ 423 (454)
..... . .+ +.+++..+++++.-. |.. +..+. ...+ .|+.++.|-.
T Consensus 84 ~~~~~---~-v~--~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~ 136 (328)
T PRK14618 84 SKALR---E-TL--AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPN 136 (328)
T ss_pred hHHHH---H-HH--HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECcc
Confidence 54210 0 01 234566788888652 332 22333 3333 5665665544
No 177
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.06 E-value=0.0011 Score=61.96 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=33.1
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||+|..++..|+..|+ +|++++++
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999999 89999988
No 178
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.05 E-value=0.0012 Score=64.81 Aligned_cols=119 Identities=8% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 379 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~----~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~ 379 (454)
.++.+||+|-||.+++..|.+.|. +|++++|+.++++.++++++... ..+..+ ...++|+||-|++......
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~--~~~~~e-~~~~aDiIiLavkP~~~~~- 78 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI--TTNNNE-VANSADILILSIKPDLYSS- 78 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE--eCCcHH-HHhhCCEEEEEeChHHHHH-
Confidence 469999999999999999999873 69999999999999887776432 222222 2457899999987532211
Q ss_pred CCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCC---ceeccHHHHHHHHH
Q 012866 380 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMFLRQAI 430 (454)
Q Consensus 380 ~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~---~~~~Gl~mlv~Qa~ 430 (454)
.+.. ..++++.+++|+.-. ....-+++.-...+ ++++-....+.++.
T Consensus 79 ---vl~~l~~~~~~~~lvISi~AG-i~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~ 130 (272)
T PRK12491 79 ---VINQIKDQIKNDVIVVTIAAG-KSIKSTENEFDRKLKVIRVMPNTPVLVGEGM 130 (272)
T ss_pred ---HHHHHHHhhcCCcEEEEeCCC-CcHHHHHHhcCCCCcEEEECCChHHHHcCce
Confidence 1111 124566788898754 23333443322222 35666666666554
No 179
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.05 E-value=0.0011 Score=64.69 Aligned_cols=74 Identities=24% Similarity=0.478 Sum_probs=56.5
Q ss_pred CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----cccc---cc-------cccCC
Q 012866 299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFE---DI-------LNFQP 361 (454)
Q Consensus 299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~---~l-------~~~~~ 361 (454)
.++.|+.|||.|+| |.||+++..++++|+++.+++.+.+-.++.++++.. .+ +++. ++ ++ ..
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~-e~ 112 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK-EV 112 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH-hc
Confidence 46789999999988 999999999999999999999998887777766642 11 2322 22 22 35
Q ss_pred CCccEEEECCCC
Q 012866 362 EKGAILANATPL 373 (454)
Q Consensus 362 ~~~divInat~~ 373 (454)
...|++||...+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678999997654
No 180
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.04 E-value=0.0013 Score=61.88 Aligned_cols=74 Identities=19% Similarity=0.078 Sum_probs=50.9
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
.+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+.. ..++++++....++. .+.....+.++++||-||..
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~-~~~~~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLA-RCFDADILEGAFLVIAATDD 79 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEe-CCCCHHHhCCcEEEEECCCC
Confidence 467899999999999999999999999999999998764 445555442211110 01111024567888888754
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.04 E-value=0.00073 Score=68.99 Aligned_cols=117 Identities=23% Similarity=0.252 Sum_probs=73.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~--~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
+++.|||.|-+|.+++.+|.+.|.++.+++++.++.+ ++...+....+ ..++.+ ...++|+||-|+|.......-
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~aDlVilavP~~~~~~vl- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQ-LARALGFGVIDELAADLQR-AAAEADLIVLAVPVDATAALL- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHHhcCCCCcccccCHHH-HhcCCCEEEEeCCHHHHHHHH-
Confidence 3689999999999999999999998889998876543 32222222111 123333 356799999999975321100
Q ss_pred CCCChhcccCCcEEEEEecCCCCCHHHHHHHH---CCCceeccHHHH
Q 012866 382 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF 425 (454)
Q Consensus 382 ~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~---~G~~~~~Gl~ml 425 (454)
..+....++++.++.|+.-.+ ...++.+++ .+.++++|-.|.
T Consensus 78 ~~l~~~~l~~~~ivtDv~SvK--~~i~~~~~~~~~~~~~~ig~HPMa 122 (359)
T PRK06545 78 AELADLELKPGVIVTDVGSVK--GAILAEAEALLGDLIRFVGGHPMA 122 (359)
T ss_pred HHHhhcCCCCCcEEEeCcccc--HHHHHHHHHhcCCCCeEEeeCCcC
Confidence 001111256778999987653 334455555 356677776664
No 182
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.03 E-value=0.0011 Score=65.49 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 344 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~ 344 (454)
++|.|||+|-+|++++..|++.|.+|++++|++++.+++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 47999999999999999999999999999999998887654
No 183
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0024 Score=63.14 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=56.6
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--c----ccccc---cccc------CCC
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--A----RPFED---ILNF------QPE 362 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--~----~~~~~---l~~~------~~~ 362 (454)
.++++++++|.|+ ||+|++++..|.+.|++|++++|+.+++++++++++.. . +++.+ +... ...
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3578999999996 79999999999999999999999999999998887521 1 22222 1110 124
Q ss_pred CccEEEECCCC
Q 012866 363 KGAILANATPL 373 (454)
Q Consensus 363 ~~divInat~~ 373 (454)
..|+|||+...
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 57999998765
No 184
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.00 E-value=0.00065 Score=58.73 Aligned_cols=107 Identities=23% Similarity=0.227 Sum_probs=63.6
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeE-EEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARV-VIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v-~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
.-++-|||+|.+|.+++.+|.+.|++| -+++|+.+.++.++..++... ..++.+ ...++|+++-|+|-..-.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~--~~~~~~-~~~~aDlv~iavpDdaI~---- 82 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA--ILDLEE-ILRDADLVFIAVPDDAIA---- 82 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-------TTG-GGCC-SEEEE-S-CCHHH----
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc--cccccc-ccccCCEEEEEechHHHH----
Confidence 357999999999999999999999965 567999999998888776532 122323 345789999999842111
Q ss_pred CCCChh-----cccCCcEEEEEecCCCCCHHHHHHHHCCCce
Q 012866 382 VPVSEE-----TLRDYQLVFDAVYTPRKTRLLKDAEAAGAII 418 (454)
Q Consensus 382 ~~i~~~-----~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~ 418 (454)
.+..+ .+.++.+|+-.+= -.....|+-++++|+.+
T Consensus 83 -~va~~La~~~~~~~g~iVvHtSG-a~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 83 -EVAEQLAQYGAWRPGQIVVHTSG-ALGSDVLAPARERGAIV 122 (127)
T ss_dssp -HHHHHHHCC--S-TT-EEEES-S-S--GGGGHHHHHTT-EE
T ss_pred -HHHHHHHHhccCCCCcEEEECCC-CChHHhhhhHHHCCCeE
Confidence 11111 1346777776653 23566778889999865
No 185
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.99 E-value=0.0018 Score=64.10 Aligned_cols=48 Identities=31% Similarity=0.397 Sum_probs=43.0
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+.+++++|+|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l 84 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI 84 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 4567899999996 79999999999999999999999999988887765
No 186
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.99 E-value=0.0012 Score=63.44 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=32.1
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457899999999999999999999999 99998875
No 187
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.99 E-value=0.0014 Score=65.50 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
+..+.||+|.|+|.|.+|++++..|...|+.|.-.+|+..+.+.. .++.....+++++ +.++|+||-+.|..-.
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-~~~~~~~~d~~~~----~~~sD~ivv~~pLt~~- 230 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-YEYYAEFVDIEEL----LANSDVIVVNCPLTKE- 230 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-HHhcccccCHHHH----HhhCCEEEEecCCCHH-
Confidence 356789999999999999999999999997788888887665544 3334444444443 4678999999987532
Q ss_pred CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866 378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
+ ...+..+ .++++.+++.+.-.+- +-.-+.+|-+.|-..--|++.+
T Consensus 231 -T-~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf 280 (336)
T KOG0069|consen 231 -T-RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVF 280 (336)
T ss_pred -H-HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccccccccc
Confidence 1 1235544 3567778888776655 4555677777787777777765
No 188
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0031 Score=59.95 Aligned_cols=76 Identities=26% Similarity=0.277 Sum_probs=56.3
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc--CCCCccEEEEC
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF--QPEKGAILANA 370 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~--~~~~~divIna 370 (454)
.++++++++|.|+ |+.|+.++..|.+.|++|++++|+.++++++++..+... .++.+ +... .....|+||++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 4567899999997 799999999999999999999999999888877665432 12222 1110 12357999998
Q ss_pred CCCC
Q 012866 371 TPLG 374 (454)
Q Consensus 371 t~~g 374 (454)
....
T Consensus 85 ag~~ 88 (245)
T PRK07060 85 AGIA 88 (245)
T ss_pred CCCC
Confidence 8654
No 189
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0017 Score=63.09 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=53.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
.++.+||+|.||+|++..|.+.| .+|++.||+.++++.++++|+... ..+..+ ...++|+|+-|...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~--~~~~~~-~~~~advv~LavKP 72 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVT--TTDNQE-AVEEADVVFLAVKP 72 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcc--cCcHHH-HHhhCCEEEEEeCh
Confidence 46899999999999999999999 389999999999999999998763 222222 34567888877754
No 190
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.95 E-value=0.0013 Score=67.31 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--Cccccc----
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMG--AARPFE---- 354 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~--~~~~~~---- 354 (454)
+++++|+|+|+||.|..++..|+..|+ +|+|++++ ..|++.+++.+.. ..+.++
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 567899999999999999999999999 99999976 3466666665532 111111
Q ss_pred -----cccccCCCCccEEEECCC
Q 012866 355 -----DILNFQPEKGAILANATP 372 (454)
Q Consensus 355 -----~l~~~~~~~~divInat~ 372 (454)
.+.+ .+.++|+||+|+-
T Consensus 119 ~i~~~~~~~-~~~~~DlVid~~D 140 (370)
T PRK05600 119 RLTAENAVE-LLNGVDLVLDGSD 140 (370)
T ss_pred ecCHHHHHH-HHhCCCEEEECCC
Confidence 1122 3567999999884
No 191
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.003 Score=61.13 Aligned_cols=73 Identities=30% Similarity=0.354 Sum_probs=54.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di 366 (454)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.++++++++... .++.+ +.+. .....|+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 56899999996 799999999999999999999999998888888765321 12221 1110 1245799
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+||+...
T Consensus 84 lv~~ag~ 90 (261)
T PRK08265 84 LVNLACT 90 (261)
T ss_pred EEECCCC
Confidence 9998653
No 192
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0033 Score=63.41 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=55.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCCC
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPEK 363 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~ 363 (454)
+++|+++|.|+ ||+|++++..|++.|++|+++.|+.++.+++.+++. ... .++.+ +..+ ....
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 56899999997 699999999999999999999999999888876652 221 12221 1110 1246
Q ss_pred ccEEEECCCCCC
Q 012866 364 GAILANATPLGM 375 (454)
Q Consensus 364 ~divInat~~g~ 375 (454)
.|++||+...+.
T Consensus 85 iD~lVnnAG~~~ 96 (330)
T PRK06139 85 IDVWVNNVGVGA 96 (330)
T ss_pred CCEEEECCCcCC
Confidence 799999886543
No 193
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.92 E-value=0.0053 Score=64.82 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCceEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 301 ~~~k~vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
.++++++|+|.|++|++ ++..|.++|++|++.++.... .++|. +.+..... ..-.+ .+.++|+||- |.|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~-~~gi~~~~-~~~~~-~~~~~d~vv~--spgi--- 76 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLL-ELGAIIFI-GHDAE-NIKDADVVVY--SSAI--- 76 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHH-HCCCEEeC-CCCHH-HCCCCCEEEE--CCCC---
Confidence 45789999999999999 699999999999999975432 22221 11211100 00000 1223444442 1111
Q ss_pred CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866 379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 426 (454)
Q Consensus 379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv 426 (454)
|...|.+++|+++|++++.-.+++-
T Consensus 77 -----------------------~~~~~~~~~a~~~~i~i~~~~e~~~ 101 (461)
T PRK00421 77 -----------------------PDDNPELVAARELGIPVVRRAEMLA 101 (461)
T ss_pred -----------------------CCCCHHHHHHHHCCCcEEeHHHHHH
Confidence 3356778999999999988888763
No 194
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.91 E-value=0.0033 Score=62.91 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=59.6
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC---------ccccccccc-------c--
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA---------ARPFEDILN-------F-- 359 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~---------~~~~~~l~~-------~-- 359 (454)
.++.++.++|.|+ .|+|++++..|+.+|++|++.+|+.+++++.++.+... .+++.++.+ +
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 5677899999996 69999999999999999999999999999998887631 123322211 0
Q ss_pred CCCCccEEEECCCCCCCC
Q 012866 360 QPEKGAILANATPLGMHP 377 (454)
Q Consensus 360 ~~~~~divInat~~g~~p 377 (454)
....-|++||...+...|
T Consensus 111 ~~~~ldvLInNAGV~~~~ 128 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPP 128 (314)
T ss_pred cCCCccEEEeCcccccCC
Confidence 234679999977665444
No 195
>PRK08223 hypothetical protein; Validated
Probab=96.90 E-value=0.0017 Score=63.72 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 567899999999999999999999999 99998865
No 196
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.0027 Score=62.70 Aligned_cols=40 Identities=33% Similarity=0.451 Sum_probs=35.5
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la 343 (454)
++|.|||+|-+|.+++..|+..|.+|++++++.++.++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 5799999999999999999999999999999987665543
No 197
>PRK06196 oxidoreductase; Provisional
Probab=96.87 E-value=0.0056 Score=61.05 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccccc---cc------CCCCcc
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFEDIL---NF------QPEKGA 365 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~l~---~~------~~~~~d 365 (454)
..+++|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++++++.. .. .++.+.. .+ .....|
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 3467899999997 7999999999999999999999999998887766531 11 2222211 10 124679
Q ss_pred EEEECCCCC
Q 012866 366 ILANATPLG 374 (454)
Q Consensus 366 ivInat~~g 374 (454)
+|||+....
T Consensus 102 ~li~nAg~~ 110 (315)
T PRK06196 102 ILINNAGVM 110 (315)
T ss_pred EEEECCCCC
Confidence 999988653
No 198
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.87 E-value=0.0052 Score=54.17 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=54.0
Q ss_pred eEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divInat~~ 373 (454)
||.|+|+ |..|.++++.|...+. +|.+++++.++++..+.++.... +...+. + ...++|+||.+...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~-~-~~~~aDivvitag~ 79 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDY-E-ALKDADIVVITAGV 79 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSG-G-GGTTESEEEETTST
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccc-c-ccccccEEEEeccc
Confidence 6899999 9999999999999886 79999999999888877764210 111122 2 35789999998866
Q ss_pred CCCCC
Q 012866 374 GMHPN 378 (454)
Q Consensus 374 g~~p~ 378 (454)
...|.
T Consensus 80 ~~~~g 84 (141)
T PF00056_consen 80 PRKPG 84 (141)
T ss_dssp SSSTT
T ss_pred ccccc
Confidence 44443
No 199
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.86 E-value=0.0053 Score=64.75 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+.+++++|+|.|++|++++..|.+.|++|+++++..
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 457899999999999999999999999999999864
No 200
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.86 E-value=0.0023 Score=68.51 Aligned_cols=72 Identities=21% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--------------Cc--ccccc---ccccC
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--------------AA--RPFED---ILNFQ 360 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--------------~~--~~~~~---l~~~~ 360 (454)
.+|+.++|+|+ |++|++++..|.+.|++|+++.|+.++++.+.+.+.. .. .++.+ +.+ .
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~-a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP-A 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH-H
Confidence 35789999996 8999999999999999999999999998887654311 01 12222 222 3
Q ss_pred CCCccEEEECCCC
Q 012866 361 PEKGAILANATPL 373 (454)
Q Consensus 361 ~~~~divInat~~ 373 (454)
+.+.|+|||+...
T Consensus 157 LggiDiVVn~AG~ 169 (576)
T PLN03209 157 LGNASVVICCIGA 169 (576)
T ss_pred hcCCCEEEEcccc
Confidence 5678999998654
No 201
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.85 E-value=0.0034 Score=60.64 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di 366 (454)
+++|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++.++++... .++.+ +..+ .....|+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 83 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC 83 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 56889999996 699999999999999999999999999998887765321 12211 1110 1246799
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+||+...
T Consensus 84 li~~ag~ 90 (263)
T PRK06200 84 FVGNAGI 90 (263)
T ss_pred EEECCCC
Confidence 9998764
No 202
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.85 E-value=0.0022 Score=64.14 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=60.7
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-C----------ccccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-A----------ARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~----------~~~~~~l~~~~~~~~divInat~~ 373 (454)
++.|||+|.+|.+++..|++.|.+|++++|+.++++++.+.... . .....+..+ ...++|+||-|++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~~ 81 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE-ALADADLILVAVPS 81 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH-HHhCCCEEEEeCCH
Confidence 68999999999999999999999999999999998888764210 0 001112222 24578999999985
Q ss_pred CCCCCCCCCCCC--hhcccCCcEEEEEe
Q 012866 374 GMHPNTDRVPVS--EETLRDYQLVFDAV 399 (454)
Q Consensus 374 g~~p~~~~~~i~--~~~l~~~~~v~D~~ 399 (454)
.... . .+. ...+.++.+++++.
T Consensus 82 ~~~~---~-v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 82 QALR---E-VLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HHHH---H-HHHHHHhhcCCCCEEEEEe
Confidence 2111 0 011 11345677888885
No 203
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.85 E-value=0.0023 Score=60.63 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=59.8
Q ss_pred eEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----Cc----cccccccccCCCCccEEEECCCCCC
Q 012866 305 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AA----RPFEDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 305 ~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~----~~~~~l~~~~~~~~divInat~~g~ 375 (454)
++.||| +|.+|.+++..|.+.|.+|++++|+.++++.+++.+.. .. ....+..+ ....+|+||-|+|...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e-a~~~aDvVilavp~~~ 80 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE-AAKRADVVILAVPWDH 80 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH-HHhcCCEEEEECCHHH
Confidence 589997 89999999999999999999999999999888765311 00 01111122 3457899999998653
Q ss_pred CCCCCCCCCChhcccCCcEEEEEe
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
.+..-. .+. ..+. +.+|+|+.
T Consensus 81 ~~~~l~-~l~-~~l~-~~vvI~~~ 101 (219)
T TIGR01915 81 VLKTLE-SLR-DELS-GKLVISPV 101 (219)
T ss_pred HHHHHH-HHH-Hhcc-CCEEEEec
Confidence 321000 011 1233 37888875
No 204
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.84 E-value=0.0016 Score=63.90 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=71.6
Q ss_pred eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 382 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~ 382 (454)
++.|||.|.+|.+++..|.+.|. +|++++|+.++++.+. ..+... ...+..+ ..++|+||-|+|.......-.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-~~g~~~-~~~~~~~--~~~aD~Vilavp~~~~~~~~~- 76 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-ELGLVD-EIVSFEE--LKKCDVIFLAIPVDAIIEILP- 76 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-HCCCCc-ccCCHHH--HhcCCEEEEeCcHHHHHHHHH-
Confidence 58999999999999999999986 7999999998877653 344311 1112222 234899999998754321000
Q ss_pred CCChhcccCCcEEEEEecCCCCCHHHHHHHHC-CCceeccHHH
Q 012866 383 PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA-GAIIVSGVEM 424 (454)
Q Consensus 383 ~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~-G~~~~~Gl~m 424 (454)
.+. . ++++.+|+|+... ...+.+.+.+. +..++.+-.|
T Consensus 77 ~l~-~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPm 115 (275)
T PRK08507 77 KLL-D-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPM 115 (275)
T ss_pred HHh-c-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCc
Confidence 111 2 5677899997553 34555655543 3456666565
No 205
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.83 E-value=0.0026 Score=62.01 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=51.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G---~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
.++.|||+|.+|.+++..|.+.| .+|.+++|+.++++++.+.++.... .+..+ .+.++|+||-|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~--~~~~~-~~~~advVil~v~~ 72 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA--TDNQE-AAQEADVVVLAVKP 72 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec--CChHH-HHhcCCEEEEEcCH
Confidence 36899999999999999999988 5899999999999988887654321 12222 23567888888864
No 206
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.83 E-value=0.0031 Score=60.96 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=53.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di 366 (454)
+++|+++|+|+ ||.|++++..|.+.|++|++++|+.++++++.+..+... .++.+ +.+. .....|+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 82 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC 82 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 46799999996 699999999999999999999999998888876544321 12221 1110 1245799
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+||+...
T Consensus 83 li~~Ag~ 89 (262)
T TIGR03325 83 LIPNAGI 89 (262)
T ss_pred EEECCCC
Confidence 9998753
No 207
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=96.83 E-value=0.0029 Score=58.01 Aligned_cols=72 Identities=26% Similarity=0.403 Sum_probs=56.5
Q ss_pred CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----cccc----------cccccCCCC
Q 012866 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFE----------DILNFQPEK 363 (454)
Q Consensus 301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~----------~l~~~~~~~ 363 (454)
+..|.++|.|+| |+||||+..|++.|++|.+.+++.+.|++.+..++. .. +++. +..+ ....
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k-~~g~ 90 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK-SLGT 90 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH-hcCC
Confidence 456788999987 999999999999999999999999999999999875 22 1221 1112 3456
Q ss_pred ccEEEECCCC
Q 012866 364 GAILANATPL 373 (454)
Q Consensus 364 ~divInat~~ 373 (454)
.+++|||..+
T Consensus 91 psvlVncAGI 100 (256)
T KOG1200|consen 91 PSVLVNCAGI 100 (256)
T ss_pred CcEEEEcCcc
Confidence 7999999865
No 208
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.83 E-value=0.0035 Score=59.69 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=41.5
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
+++++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++...+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 56789999996 799999999999999999999999988888776654
No 209
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.82 E-value=0.0022 Score=62.82 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=55.5
Q ss_pred CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----C-c----cccccccc---------cC
Q 012866 300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----A-A----RPFEDILN---------FQ 360 (454)
Q Consensus 300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~-~----~~~~~l~~---------~~ 360 (454)
.+.||.|+|.||. |.|+++|+.|++.|++++++.|..++.+.+++++.. . . .++.+.++ ..
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 4679999999985 999999999999999988888888888877665531 2 1 22222211 03
Q ss_pred CCCccEEEECCCCCC
Q 012866 361 PEKGAILANATPLGM 375 (454)
Q Consensus 361 ~~~~divInat~~g~ 375 (454)
..+.|++||....+.
T Consensus 89 fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL 103 (282)
T ss_pred cCCCCEEEecCcccc
Confidence 567899999775543
No 210
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.81 E-value=0.0026 Score=62.98 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=36.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la 343 (454)
++|.|||+|.+|.+++..|+..|.+|++++|+.++.++..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 6799999999999999999999999999999998876643
No 211
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.81 E-value=0.0022 Score=61.88 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567899999999999999999999999 99999764
No 212
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0026 Score=62.24 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPLGMH 376 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~~~~~~~~divInat~~g~~ 376 (454)
....+|+|||.|-+|.-.+.-...+|++|+|.+++.+|.+.+-..|+.+. .+...+++ ...++|++|++.=+.-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee-~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEE-AVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHH-HhhhccEEEEEEEecCC
Confidence 34568999999988888888888899999999999999999988887653 23344555 56789999998743211
Q ss_pred CCCCCCCCChh---cccCCcEEEEEecC
Q 012866 377 PNTDRVPVSEE---TLRDYQLVFDAVYT 401 (454)
Q Consensus 377 p~~~~~~i~~~---~l~~~~~v~D~~y~ 401 (454)
..+..+..+ .++++.+++|+.-.
T Consensus 245 --kaPkLvt~e~vk~MkpGsVivDVAiD 270 (371)
T COG0686 245 --KAPKLVTREMVKQMKPGSVIVDVAID 270 (371)
T ss_pred --CCceehhHHHHHhcCCCcEEEEEEEc
Confidence 112224444 35678888888653
No 213
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.80 E-value=0.0025 Score=66.19 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=47.0
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..+.||++.|+|.|.+|+.++..+..+|++|..++|+..... .+.. ...++++ .+.++|+|+...|.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~-----~~~~--~~~~l~e-ll~~sDiVslh~Pl 213 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL-----GNAR--QVGSLEE-LLAQSDVVSLHVPE 213 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----CCce--ecCCHHH-HHhhCCEEEEcCCC
Confidence 468899999999999999999999999999999998742210 0011 1123333 34557777777664
No 214
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0031 Score=60.09 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=55.7
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHhcCCcc-----ccccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS-LASDVMGAAR-----PFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~-la~~~~~~~~-----~~~~l~~~~~~~~divInat~~ 373 (454)
++++|+|+|-.|+.+|..|.+.|.+|+++.++.+++++ ++++++..++ +.+.|.+..+.++|++|-+|.-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 36899999999999999999999999999999999888 4445554332 2334555457889999999974
No 215
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.0036 Score=60.19 Aligned_cols=73 Identities=34% Similarity=0.372 Sum_probs=53.6
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc------CCCCccEEE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF------QPEKGAILA 368 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~---l~~~------~~~~~divI 368 (454)
+++++++|+|+ ||.|++++..|.+.|++|+++.|+.++.+++.++++.... ++.+ +... ...+.|+||
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 84 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF 84 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 67899999997 7999999999999999999999999888877776543221 2211 1110 124579999
Q ss_pred ECCCC
Q 012866 369 NATPL 373 (454)
Q Consensus 369 nat~~ 373 (454)
++...
T Consensus 85 ~~ag~ 89 (255)
T PRK06057 85 NNAGI 89 (255)
T ss_pred ECCCc
Confidence 98754
No 216
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.79 E-value=0.0027 Score=63.50 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
+++|++.|||.|.+|++++..|.+.|.+|++++|..+ +.+++. +.+....+ ..+ ..+++|+|+.++|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-~~Gv~~~s---~~e-a~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-EDGFKVGT---VEE-AIPQADLIMNLLPDE 70 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-HCCCEECC---HHH-HHhcCCEEEEeCCcH
Confidence 3578999999999999999999999998877666543 333333 44443222 222 346789999999854
No 217
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.79 E-value=0.0032 Score=62.80 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=37.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 344 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~ 344 (454)
++|.|||+|-+|.+++..|+..|++|++++++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 57999999999999999999999999999999988777654
No 218
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0067 Score=58.14 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=75.7
Q ss_pred ceEEEEccchhHHHHHHHHHHC-C-C-eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSR-G-A-RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~-G-~-~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~ 373 (454)
...+++|+|--|-..++...+. - . +|.||||+.+.|+++|+.+.... .....++. ++..+|||+.||+.
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~-aV~~sDIIs~atls 217 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNG-AVSNSDIISGATLS 217 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhc-ccccCceEEecccc
Confidence 3456789998888777765443 3 4 89999999999999998764321 12233444 67889999999974
Q ss_pred CCCCCCCCCCCChhcccCCcEEEEEec--CCCCCHHHHHHHHCCCceeccHH
Q 012866 374 GMHPNTDRVPVSEETLRDYQLVFDAVY--TPRKTRLLKDAEAAGAIIVSGVE 423 (454)
Q Consensus 374 g~~p~~~~~~i~~~~l~~~~~v~D~~y--~P~~T~ll~~A~~~G~~~~~Gl~ 423 (454)
- .| .+-.+|+.|+ .-+|++- .|..-..=.++-+.+|..++--+
T Consensus 218 t-eP-----ilfgewlkpg-thIdlVGsf~p~mhEcDdelIq~a~vfVDsre 262 (333)
T KOG3007|consen 218 T-EP-----ILFGEWLKPG-THIDLVGSFKPVMHECDDELIQSACVFVDSRE 262 (333)
T ss_pred C-Cc-----eeeeeeecCC-ceEeeeccCCchHHHHhHHHhhhheEEEecch
Confidence 2 22 2446788887 4678864 45543333444457888888744
No 219
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.76 E-value=0.0022 Score=61.23 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcCC--cccc-----
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMGA--ARPF----- 353 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~~--~~~~----- 353 (454)
+.+++|+|+|+||.|..++..|+..|+ +++|++.+ ..|++.+++.+... .+.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 567899999999999999999999999 99998543 23566666555321 1111
Q ss_pred ----ccccccCCCCccEEEECCC
Q 012866 354 ----EDILNFQPEKGAILANATP 372 (454)
Q Consensus 354 ----~~l~~~~~~~~divInat~ 372 (454)
+++.+ ...++|+||+|+.
T Consensus 99 ~i~~~~~~~-~~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEE-LIAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHH-HHhCCCEEEEcCC
Confidence 11222 2457899999874
No 220
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.70 E-value=0.0044 Score=60.48 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++.+|+..|+ +|+|++.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999998 99998865
No 221
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.70 E-value=0.00094 Score=68.19 Aligned_cols=105 Identities=19% Similarity=0.070 Sum_probs=73.6
Q ss_pred CceEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
..+++|||. |-+|+.++.+|++. |.+|+.++|..+. ..+..+ .+.++|+||-|+|+......-
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------------~~~~~~-~v~~aDlVilavPv~~~~~~l 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------------SLDPAT-LLQRADVLIFSAPIRHTAALI 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------------cCCHHH-HhcCCCEEEEeCCHHHHHHHH
Confidence 468999999 99999999999975 6699999885211 112222 346789999999986432100
Q ss_pred CCCCChh--cccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866 381 RVPVSEE--TLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 381 ~~~i~~~--~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
.. +.+. .++++.+|.|+... .+..++.+.+.++.++.|-.|+
T Consensus 69 ~~-l~~~~~~l~~~~iVtDVgSv--K~~i~~~~~~~~~~fVG~HPMa 112 (370)
T PRK08818 69 EE-YVALAGGRAAGQLWLDVTSI--KQAPVAAMLASQAEVVGLHPMT 112 (370)
T ss_pred HH-HhhhhcCCCCCeEEEECCCC--cHHHHHHHHhcCCCEEeeCCCC
Confidence 00 1111 26789999999865 4666788888887888888877
No 222
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.69 E-value=0.0062 Score=59.50 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHH---HHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERA---KSLASDVMGA-A--RPFED---ILNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a---~~la~~~~~~-~--~~~~~---l~~~------~~~ 362 (454)
+++|.+||.|++ |+|++++.+|++.|++|+++.|+.+.+ +++.+.++.. . .++.+ +..+ ...
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 568999999987 899999999999999999999986433 3444443321 1 12221 1110 124
Q ss_pred CccEEEECCCCC
Q 012866 363 KGAILANATPLG 374 (454)
Q Consensus 363 ~~divInat~~g 374 (454)
..|++||+....
T Consensus 85 ~iD~lVnnAG~~ 96 (271)
T PRK06505 85 KLDFVVHAIGFS 96 (271)
T ss_pred CCCEEEECCccC
Confidence 679999987543
No 223
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.66 E-value=0.011 Score=62.15 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=33.0
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 337 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~ 337 (454)
+.+++++|+|.|++|++++..|.+.|++|++++++..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4578999999999999999999999999999987643
No 224
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.0075 Score=62.89 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
+.+++|+|+|-|..|++++..|.+.|++|++++.++..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 44899999999999999999999999999999955433
No 225
>PRK07680 late competence protein ComER; Validated
Probab=96.65 E-value=0.0032 Score=61.73 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=71.6
Q ss_pred eEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHh-cCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDV-MGAARPFEDILNFQPEKGAILANATPLGMHPNT 379 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~----~v~i~nRt~~~a~~la~~~-~~~~~~~~~l~~~~~~~~divInat~~g~~p~~ 379 (454)
++.|||+|.+|++++.+|.+.|. +|++++|+.++++.+++.+ +... ..+..+ ...++|+||-|++......
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~--~~~~~~-~~~~aDiVilav~p~~~~~- 77 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHV--AKTIEE-VISQSDLIFICVKPLDIYP- 77 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEE--ECCHHH-HHHhCCEEEEecCHHHHHH-
Confidence 48899999999999999999883 6999999999998888765 2221 112222 2356899999986432111
Q ss_pred CCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHH-HCCCceeccHHHHHHHH
Q 012866 380 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAE-AAGAIIVSGVEMFLRQA 429 (454)
Q Consensus 380 ~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~-~~G~~~~~Gl~mlv~Qa 429 (454)
.+.. ..+.++.+++++. ++....-++... ....+++++...-+.++
T Consensus 78 ---vl~~l~~~l~~~~~iis~~-ag~~~~~L~~~~~~~~~r~~p~~~~~~~~G 126 (273)
T PRK07680 78 ---LLQKLAPHLTDEHCLVSIT-SPISVEQLETLVPCQVARIIPSITNRALSG 126 (273)
T ss_pred ---HHHHHHhhcCCCCEEEEEC-CCCCHHHHHHHcCCCEEEECCChHHHHhhc
Confidence 0110 1345667888887 333333233221 12345666644333333
No 226
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.64 E-value=0.0035 Score=59.92 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|.||.|..++.+|+..|+ ++++++.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999999 99999865
No 227
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.63 E-value=0.0057 Score=57.57 Aligned_cols=75 Identities=17% Similarity=0.109 Sum_probs=53.0
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
..+++||+|||+|+|..|..=+..|.+.|++|+|++.+. +..+.++.+-...+.. ..........+++||-||+-
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~~~~lviaAt~d 82 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLDDAFLVIAATDD 82 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhcCceEEEEeCCC
Confidence 356889999999999999999999999999999999987 5555555554422222 11111123447888888853
No 228
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.62 E-value=0.0023 Score=62.28 Aligned_cols=69 Identities=28% Similarity=0.320 Sum_probs=53.1
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
.-+.||.++|.|-|..|+..+.+|+..|++|+|..-++-.|-+.+-+ |-+..++++ ...+.||+|.||.
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMe-G~~V~tm~e----a~~e~difVTtTG 278 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAME-GYEVTTLEE----AIREVDIFVTTTG 278 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhh-ccEeeeHHH----hhhcCCEEEEccC
Confidence 55789999999999999999999999999999999988776654422 223334443 3456789998885
No 229
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.62 E-value=0.0013 Score=67.59 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=60.2
Q ss_pred CCceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 302 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 302 ~~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
..+++.||| .|.+|++++.+|.+.|.+|++++|+.. ++..+ ...++|+||-|+|.......-
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~----------------~~~~~-~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW----------------DRAED-ILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc----------------hhHHH-HHhcCCEEEEeCcHHHHHHHH
Confidence 347899999 899999999999999999999999631 01111 234689999999976432100
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 412 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~ 412 (454)
. .+. . ++++.+|.|+... .+..++++.
T Consensus 160 ~-~l~-~-l~~~~iv~Dv~Sv--K~~~~~~~~ 186 (374)
T PRK11199 160 A-RLP-P-LPEDCILVDLTSV--KNAPLQAML 186 (374)
T ss_pred H-HHh-C-CCCCcEEEECCCc--cHHHHHHHH
Confidence 0 011 1 5678999999654 233444444
No 230
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.61 E-value=0.006 Score=60.89 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=35.1
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
++|.|||+|-+|.+++..|++.|.+|++++|+.++.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~ 41 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAA 41 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence 369999999999999999999999999999998876653
No 231
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0009 Score=67.15 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=89.4
Q ss_pred CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcccccc------ccccCCCCccEEEECCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFED------ILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~------l~~~~~~~~divInat~~g~ 375 (454)
+++||++|+|-+++.++-.|++.+- +|+|.+|+...||++++.++.+++.++- |.. ..+.-|+++.-+|-..
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~-~v~~~D~viSLlP~t~ 80 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRK-EVKPLDLVISLLPYTF 80 (445)
T ss_pred CcceEEecCccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHh-hhcccceeeeeccchh
Confidence 4789999999999999999998876 9999999999999999987766554431 222 3566799998888765
Q ss_pred CCCCCCCCCChhcccCCcEEEEEecC-CCCCHHHHHHHHCCCce------eccHHHHH-----------HHHHHHHHHhc
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDAVYT-PRKTRLLKDAEAAGAII------VSGVEMFL-----------RQAIGQFNLFT 437 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~~y~-P~~T~ll~~A~~~G~~~------~~Gl~mlv-----------~Qa~~~f~lw~ 437 (454)
+|. +.+.+.....-++--.|. |+...|-+.|...|..+ ..|++-+. -|-+.+|+-++
T Consensus 81 h~l-----VaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~vh~hgg~i~sf~syc 155 (445)
T KOG0172|consen 81 HPL-----VAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLVHEHGGKIKSFKSYC 155 (445)
T ss_pred hHH-----HHHHHHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhhhhccchHHHhhcceeeehhhhc
Confidence 543 233333333333444554 43344444555566544 45666442 24466777777
Q ss_pred CC-CCCH
Q 012866 438 GK-EAPK 443 (454)
Q Consensus 438 g~-~~p~ 443 (454)
|- ++|.
T Consensus 156 Gglpape 162 (445)
T KOG0172|consen 156 GGLPAPE 162 (445)
T ss_pred CCccChh
Confidence 54 4443
No 232
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.61 E-value=0.0052 Score=61.68 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
++|.|||+|-||+.++..++..|++|++++++++..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 689999999999999999999999999999998866543
No 233
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.61 E-value=0.004 Score=60.58 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=48.8
Q ss_pred eEEEEccchhHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA----RVVIF-DIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~----~v~i~-nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
++.+||.|.||.+++..|.+.|. +|+++ ||+.++++.+.+ ++... ..+..+ ...++|+||-|++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~--~~~~~e-~~~~aDvVil~v~~ 71 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKT--AASNTE-VVKSSDVIILAVKP 71 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEE--eCChHH-HHhcCCEEEEEECc
Confidence 58899999999999999999986 89999 999999877654 44322 122222 23568999988863
No 234
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.005 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=41.2
Q ss_pred CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|.|++ |.|++++..|++.|++|.+++|+.++.+++.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 568999999976 9999999999999999999999999988886655
No 235
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.58 E-value=0.008 Score=57.21 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccccc---cc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDIL---NF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~---~~------~~~~~di 366 (454)
+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.++++... .++.+.. .+ .....|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 46789999996 799999999999999999999999888888777765432 1221111 10 1245799
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+||+...
T Consensus 84 vi~~ag~ 90 (249)
T PRK06500 84 VFINAGV 90 (249)
T ss_pred EEECCCC
Confidence 9998754
No 236
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.58 E-value=0.0056 Score=58.98 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=36.8
Q ss_pred CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|.++|.|++ |+|++++..|++.|++|++..|+. +.++..+++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~ 52 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL 52 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh
Confidence 678999999985 999999999999999999999984 444443433
No 237
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.57 E-value=0.0063 Score=60.20 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=35.6
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
++|.|||+|-+|++++..|+..|.+|+++++++++.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 579999999999999999999999999999999887643
No 238
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.57 E-value=0.007 Score=59.84 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=49.0
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc---------cccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA---------RPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~---------~~~~~l~~~~~~~~divInat~~ 373 (454)
++.|+|+|.+|..++..|.+.|.+|++++|+.++.+.+.+. +... ....+..+ ...+|+||-||+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH--cCCCCEEEEeccc
Confidence 58999999999999999999999999999988887776543 2211 01122222 2568999999875
No 239
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.55 E-value=0.0055 Score=65.34 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=36.6
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la 343 (454)
++|.|||+|-||++++..|+..|++|+++||++++.+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~ 44 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIG 44 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence 4799999999999999999999999999999999877653
No 240
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.55 E-value=0.006 Score=60.31 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=35.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 341 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~ 341 (454)
++|.|||+|-||+.++..++..|++|++++++++..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 47999999999999999999999999999999998766
No 241
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.55 E-value=0.0062 Score=59.07 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=42.1
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|.++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI 52 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999997 59999999999999999999999999888877665
No 242
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.53 E-value=0.0072 Score=60.58 Aligned_cols=74 Identities=24% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~ 372 (454)
.++++.|||+|.+|.++++.|...|. +|.+++++.++++..+.++.... +...+.+ ..+++|+||.+..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~--~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS--DCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH--HhCCCCEEEEecC
Confidence 35799999999999999999999987 79999999998888877765321 1111222 3578999999876
Q ss_pred CCCCC
Q 012866 373 LGMHP 377 (454)
Q Consensus 373 ~g~~p 377 (454)
..-.|
T Consensus 83 ~~~k~ 87 (315)
T PRK00066 83 APQKP 87 (315)
T ss_pred CCCCC
Confidence 64444
No 243
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.51 E-value=0.01 Score=58.05 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=50.7
Q ss_pred CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCC-c--cccccc---ccc------CCC
Q 012866 301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFEDI---LNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~-~--~~~~~l---~~~------~~~ 362 (454)
+++|.++|.|+ +|+|++++..|++.|++|++..|+. +++++++++++.. . +++.+. ..+ ...
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999998 4999999999999999999999984 4555665555432 1 122221 110 124
Q ss_pred CccEEEECCCC
Q 012866 363 KGAILANATPL 373 (454)
Q Consensus 363 ~~divInat~~ 373 (454)
..|++||+...
T Consensus 83 ~iDilVnnAG~ 93 (274)
T PRK08415 83 KIDFIVHSVAF 93 (274)
T ss_pred CCCEEEECCcc
Confidence 67999998754
No 244
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.50 E-value=0.0048 Score=52.12 Aligned_cols=105 Identities=23% Similarity=0.305 Sum_probs=70.5
Q ss_pred eEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
++.|||+|..|+.-..++.+. +.+ +.|+++++++++++++.++... .+++++-+ ..+.|+|+.+||.....
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~I~tp~~~h~--- 76 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA--DEDVDAVIIATPPSSHA--- 76 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH--HTTESEEEEESSGGGHH---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH--hhcCCEEEEecCCcchH---
Confidence 589999999999999888877 345 4699999999999999987652 23333322 13689999999864322
Q ss_pred CCCCChhcccCC-cEEEEEecCCCC------CHHHHHHHHCCCcee
Q 012866 381 RVPVSEETLRDY-QLVFDAVYTPRK------TRLLKDAEAAGAIIV 419 (454)
Q Consensus 381 ~~~i~~~~l~~~-~~v~D~~y~P~~------T~ll~~A~~~G~~~~ 419 (454)
.+-...+..+ .+++| +|.- -.+++.|++.|..+.
T Consensus 77 --~~~~~~l~~g~~v~~E---KP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 77 --EIAKKALEAGKHVLVE---KPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp --HHHHHHHHTTSEEEEE---SSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred --HHHHHHHHcCCEEEEE---cCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 1223344444 34444 4442 456677777777654
No 245
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.50 E-value=0.012 Score=61.15 Aligned_cols=100 Identities=21% Similarity=0.174 Sum_probs=64.8
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----------------Ccccc-ccccccCCCCccEE
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----------------AARPF-EDILNFQPEKGAIL 367 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----------------~~~~~-~~l~~~~~~~~div 367 (454)
++.|||.|-+|.+++..|++.|++|++++|+.++.+.+.+.... ..... .+..+ ...++|+|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~-~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYED-AIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHH-HHhhCCEE
Confidence 58899999999999999999999999999999998887642100 00011 12222 24678999
Q ss_pred EECCCCCCCCCCCC--CCCC---h---hcccCCcEEEEEecCCCCC
Q 012866 368 ANATPLGMHPNTDR--VPVS---E---ETLRDYQLVFDAVYTPRKT 405 (454)
Q Consensus 368 Inat~~g~~p~~~~--~~i~---~---~~l~~~~~v~D~~y~P~~T 405 (454)
|-|+|......... ..+. . ..++++.+++|..-.|..|
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt 126 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGT 126 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCc
Confidence 99988643221000 0011 1 1246778888887665544
No 246
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.0033 Score=62.74 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=31.9
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+.++.|||+|.+|++++..|.+.|.+|++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999985
No 247
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.0066 Score=58.23 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=42.5
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|.|+ ||+|++++..|.+.|++|.++.|+.++++++++++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI 53 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 367899999997 69999999999999999999999999988887765
No 248
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.49 E-value=0.007 Score=58.09 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=42.2
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
++++|+++|.|+ |+.|++++..|.+.|++|++.+|+.++.+++.+.+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 467899999996 799999999999999999999999988877766653
No 249
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.48 E-value=0.01 Score=57.66 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=48.2
Q ss_pred CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFED---ILNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~-~--~~~~~---l~~~------~~~ 362 (454)
+++|.++|.|++ |+|++++..|++.|++|++..|+. +.++++....+.. . +++.+ +..+ ...
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 568999999985 899999999999999999998873 2344443332211 1 12221 1110 124
Q ss_pred CccEEEECCCC
Q 012866 363 KGAILANATPL 373 (454)
Q Consensus 363 ~~divInat~~ 373 (454)
..|++||+...
T Consensus 84 ~iD~linnAg~ 94 (262)
T PRK07984 84 KFDGFVHSIGF 94 (262)
T ss_pred CCCEEEECCcc
Confidence 57999998864
No 250
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.47 E-value=0.013 Score=56.54 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcCC-c--ccccc---cccc------C
Q 012866 299 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMGA-A--RPFED---ILNF------Q 360 (454)
Q Consensus 299 ~~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~~-~--~~~~~---l~~~------~ 360 (454)
..+++|.++|.|++ |+|++++..|++.|++|++..|+.+ ..++++++++.. . +++.+ +..+ .
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence 35778999999975 8999999999999999999999853 345555555421 1 12211 1110 1
Q ss_pred CCCccEEEECCCC
Q 012866 361 PEKGAILANATPL 373 (454)
Q Consensus 361 ~~~~divInat~~ 373 (454)
....|++||+...
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 2457999998643
No 251
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=96.46 E-value=0.0055 Score=60.20 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=41.6
Q ss_pred CceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 012866 303 GRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348 (454)
Q Consensus 303 ~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~ 348 (454)
|+=++|.||+ |+||+.+..|+++|.+|++++||++|.+++++++..
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~ 95 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEE 95 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4668999986 999999999999999999999999999999888753
No 252
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.46 E-value=0.0087 Score=60.09 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=52.5
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--c-ccccCCCCccEEEECCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--D-ILNFQPEKGAILANATP 372 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~-l~~~~~~~~divInat~ 372 (454)
.|++|+|+|+||.|..++..++.+|++|+.++|+.+|. ++|++++... +... + .+. ..+.+|++|++.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd~~i~~~~~~~~~~-~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGADHVINSSDSDALEA-VKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCcEEEEcCCchhhHH-hHhhCcEEEECCC
Confidence 48999999999999999998888999999999998884 5677887643 2221 1 111 1123899999987
No 253
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.0081 Score=59.99 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=42.4
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.++++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++..+++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4578999999996 59999999999999999999999999888776655
No 254
>PLN02858 fructose-bisphosphate aldolase
Probab=96.45 E-value=0.0046 Score=73.22 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=72.3
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 382 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~ 382 (454)
.+++-+||.|-||..++..|.+.|++|++|||++++++++++. |.... +...+ ...++|+||.+.|-+- .....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~-Ga~~~--~s~~e-~a~~advVi~~l~~~~--~v~~V 77 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCEL-GGHRC--DSPAE-AAKDAAALVVVLSHPD--QVDDV 77 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCeec--CCHHH-HHhcCCEEEEEcCChH--HHHHH
Confidence 4679999999999999999999999999999999999998764 33221 12222 2356899998776431 11111
Q ss_pred CCCh----hcccCCcEEEEEecC-CCCC-HHHHHHHHCC
Q 012866 383 PVSE----ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAG 415 (454)
Q Consensus 383 ~i~~----~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G 415 (454)
.+.. +.+.++.+++|+.-. |..+ .+-+.++++|
T Consensus 78 ~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred HhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 1111 124577899999875 4443 3445556677
No 255
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.45 E-value=0.011 Score=57.89 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CC
Q 012866 300 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QP 361 (454)
Q Consensus 300 ~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~---~~~~~---l~~~------~~ 361 (454)
-+++|.++|.|+ +|+|++++..|++.|++|++..|+. +++++++++++... .++.+ ++.+ ..
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence 457899999998 5999999999999999999988863 55666766654311 12211 1110 12
Q ss_pred CCccEEEECCCC
Q 012866 362 EKGAILANATPL 373 (454)
Q Consensus 362 ~~~divInat~~ 373 (454)
...|++||+...
T Consensus 87 g~iD~lv~nAG~ 98 (272)
T PRK08159 87 GKLDFVVHAIGF 98 (272)
T ss_pred CCCcEEEECCcc
Confidence 457999998754
No 256
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.016 Score=61.43 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt 335 (454)
+.+|+++|+|.|-.|++++..|.+.|++|++++-.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 56899999999999999999999999999999843
No 257
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.44 E-value=0.0064 Score=63.03 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=50.8
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc--ccccc---ccccCCCCccEEEECC
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA--RPFED---ILNFQPEKGAILANAT 371 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~--~~~~~---l~~~~~~~~divInat 371 (454)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.++....... .. .++.+ +.+ ...+.|++||+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~-~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAE-LLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHH-HhCCCCEEEECC
Confidence 457899999997 7999999999999999999999988765443322111 11 12222 222 245789999877
Q ss_pred CCC
Q 012866 372 PLG 374 (454)
Q Consensus 372 ~~g 374 (454)
..+
T Consensus 254 Gi~ 256 (406)
T PRK07424 254 GIN 256 (406)
T ss_pred CcC
Confidence 543
No 258
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.43 E-value=0.015 Score=58.48 Aligned_cols=116 Identities=24% Similarity=0.284 Sum_probs=74.5
Q ss_pred ceEEEEccchhH-HHHHHHHHHCC--C-eEEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCC
Q 012866 304 RMFVLAGAGGAG-RALAFGAKSRG--A-RVVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 304 k~vlViGaGG~a-rai~~~L~~~G--~-~v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
-++.|||+|+.+ +..+..+.+.+ + -+.+++|+.+++++++++++.. +.+++++-+ ..+.|+|+.|||...+.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLA--DPDIDAVYIATPNALHA 81 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEcCCChhhH
Confidence 479999999665 56777888775 4 6889999999999999999875 234454432 24479999999976542
Q ss_pred CCCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHHHHHHHH
Q 012866 378 NTDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFLRQA 429 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv~Qa 429 (454)
. +....|..++ ++++ +|.- ..+++.|+++|....-|....-..+
T Consensus 82 e-----~~~~AL~aGkhVl~E---KPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~ 132 (342)
T COG0673 82 E-----LALAALEAGKHVLCE---KPLALTLEEAEELVELARKAGVKLMVGFNRRFDPA 132 (342)
T ss_pred H-----HHHHHHhcCCEEEEc---CCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHH
Confidence 1 2233344333 3332 3331 3455666667776666655443333
No 259
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.42 E-value=0.0028 Score=57.49 Aligned_cols=96 Identities=25% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc--------------------c----cc
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF--------------------E----DI 356 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~--------------------~----~l 356 (454)
+...+++|+|+|.+|+.++..+..+|+++++.+..+++.+++-..... .+.+ + .+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY-FIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE-ESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc-eEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 456899999999999999999999999999999999888776543321 1111 0 01
Q ss_pred cccCCCCccEEEECCC-CCCCCCCCCCCCChh---cccCCcEEEEEecC
Q 012866 357 LNFQPEKGAILANATP-LGMHPNTDRVPVSEE---TLRDYQLVFDAVYT 401 (454)
Q Consensus 357 ~~~~~~~~divInat~-~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~ 401 (454)
.+ .+..+|+||++.- .+- ..+..+..+ .++++.++.|++-.
T Consensus 97 ~~-~i~~~d~vI~~~~~~~~---~~P~lvt~~~~~~m~~gsvIvDis~D 141 (168)
T PF01262_consen 97 AE-FIAPADIVIGNGLYWGK---RAPRLVTEEMVKSMKPGSVIVDISCD 141 (168)
T ss_dssp HH-HHHH-SEEEEHHHBTTS---S---SBEHHHHHTSSTTEEEEETTGG
T ss_pred HH-HHhhCcEEeeecccCCC---CCCEEEEhHHhhccCCCceEEEEEec
Confidence 11 2456899986553 221 112235544 35788999999764
No 260
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.0058 Score=59.66 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=50.9
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc-------CCCCccEEEE
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF-------QPEKGAILAN 369 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~-------~~~~~divIn 369 (454)
+++++|+|+ ||.|++++..|++.|++|++++|+.++.+++... +... .++.+ +... .....|++||
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~ 82 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE-GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN 82 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence 578999997 8999999999999999999999999988777542 2211 12221 1110 1135799999
Q ss_pred CCCCCC
Q 012866 370 ATPLGM 375 (454)
Q Consensus 370 at~~g~ 375 (454)
+...+.
T Consensus 83 ~Ag~~~ 88 (277)
T PRK05993 83 NGAYGQ 88 (277)
T ss_pred CCCcCC
Confidence 876543
No 261
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=96.41 E-value=0.0086 Score=58.71 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=43.8
Q ss_pred CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
..+.+|.++|.|++ |+|++++..|++.|++|+|+.|+.++.++.+..+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~ 53 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG 53 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999999976 99999999999999999999999999888776653
No 262
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.40 E-value=0.0092 Score=57.72 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=50.8
Q ss_pred CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHhc-CCc----ccccc---cccc------C
Q 012866 301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDID---FERAKSLASDVM-GAA----RPFED---ILNF------Q 360 (454)
Q Consensus 301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt---~~~a~~la~~~~-~~~----~~~~~---l~~~------~ 360 (454)
+++|.++|.|+ +|+|++++..|++.|++|++.+|+ .++.+++++++. ... +++.+ +..+ .
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 56899999997 599999999999999999998765 456677777653 211 12211 1110 1
Q ss_pred CCCccEEEECCCC
Q 012866 361 PEKGAILANATPL 373 (454)
Q Consensus 361 ~~~~divInat~~ 373 (454)
....|++||+...
T Consensus 85 ~g~ld~lv~nag~ 97 (257)
T PRK08594 85 VGVIHGVAHCIAF 97 (257)
T ss_pred CCCccEEEECccc
Confidence 2567999998754
No 263
>PRK12742 oxidoreductase; Provisional
Probab=96.39 E-value=0.013 Score=55.44 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCCcc--cccc---cccc--CCCCccEEEECC
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAAR--PFED---ILNF--QPEKGAILANAT 371 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~~~~~~--~~~~---l~~~--~~~~~divInat 371 (454)
+++|+++|+|+ ||.|++++..|.+.|++|++..| +.++.+++..+++.... ++.+ +.+. .....|++|++.
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a 83 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA 83 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence 56899999996 79999999999999998877654 67777777776654321 2221 1110 123479999987
Q ss_pred CC
Q 012866 372 PL 373 (454)
Q Consensus 372 ~~ 373 (454)
..
T Consensus 84 g~ 85 (237)
T PRK12742 84 GI 85 (237)
T ss_pred CC
Confidence 54
No 264
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.39 E-value=0.023 Score=59.93 Aligned_cols=97 Identities=25% Similarity=0.314 Sum_probs=60.6
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 380 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~ 380 (454)
+++++++|+|.||+|++++..|.++|++|+++++......++. ..+... .........++|+||-+. |..|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~-~~g~~~---~~~~~~~~~~~d~vv~sp--~i~~~-- 78 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAA-AAGITT---ADLRTADWSGFAALVLSP--GVPLT-- 78 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHH-hcCccc---cCCChhHHcCCCEEEECC--CCCcc--
Confidence 5688999999999999999999999999999998754433332 223221 111110123567776422 22111
Q ss_pred CCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866 381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
.|..-+.+.+|+++|++++..++.+
T Consensus 79 --------------------~~~~~~~v~~a~~~gi~i~~~~~~~ 103 (460)
T PRK01390 79 --------------------HPKPHWVVDLARAAGVEVIGDIELF 103 (460)
T ss_pred --------------------CCcccHHHHHHHHcCCcEEeHHHHH
Confidence 0111146778888888888777754
No 265
>PRK06182 short chain dehydrogenase; Validated
Probab=96.38 E-value=0.0059 Score=59.37 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=50.4
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEEEC
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILANA 370 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divIna 370 (454)
+++++|+|+ ||.|++++..|.+.|++|+++.|+.++.+++... +... .++.+ +... ...+.|++||+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL-GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 678999996 7999999999999999999999999887776542 2211 12221 1110 12367999998
Q ss_pred CCCC
Q 012866 371 TPLG 374 (454)
Q Consensus 371 t~~g 374 (454)
...+
T Consensus 82 ag~~ 85 (273)
T PRK06182 82 AGYG 85 (273)
T ss_pred CCcC
Confidence 8654
No 266
>PRK05717 oxidoreductase; Validated
Probab=96.35 E-value=0.01 Score=57.00 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=55.8
Q ss_pred CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cc----cc--CCCC
Q 012866 298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---IL----NF--QPEK 363 (454)
Q Consensus 298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~----~~--~~~~ 363 (454)
+..+++|+++|+|+ |+.|++++..|.+.|++|++++|+.++++++.++++... .++.+ +. .. ....
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35678999999996 799999999999999999999999888888777654321 12211 11 10 1235
Q ss_pred ccEEEECCCCC
Q 012866 364 GAILANATPLG 374 (454)
Q Consensus 364 ~divInat~~g 374 (454)
.|++|++....
T Consensus 85 id~li~~ag~~ 95 (255)
T PRK05717 85 LDALVCNAAIA 95 (255)
T ss_pred CCEEEECCCcc
Confidence 79999987643
No 267
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.35 E-value=0.011 Score=56.96 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=51.6
Q ss_pred CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhcCCc----ccccc---cccc------CCC
Q 012866 301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF--ERAKSLASDVMGAA----RPFED---ILNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~--~~a~~la~~~~~~~----~~~~~---l~~~------~~~ 362 (454)
+++|.++|.|+ +|+|++++..|++.|++|++.+|+. +..++++++++... +++.+ +.++ ...
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56899999996 6999999999999999999998763 55667776664321 12211 1110 124
Q ss_pred CccEEEECCCCC
Q 012866 363 KGAILANATPLG 374 (454)
Q Consensus 363 ~~divInat~~g 374 (454)
..|++||+....
T Consensus 85 ~iD~li~nAG~~ 96 (256)
T PRK07889 85 GLDGVVHSIGFA 96 (256)
T ss_pred CCcEEEEccccc
Confidence 689999987543
No 268
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.34 E-value=0.011 Score=56.64 Aligned_cols=48 Identities=31% Similarity=0.477 Sum_probs=43.0
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.++++++++|+|+ |+.|++++..|.+.|++|+++.|+.++++++..++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4577899999996 79999999999999999999999999988887765
No 269
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.33 E-value=0.0097 Score=57.93 Aligned_cols=76 Identities=26% Similarity=0.334 Sum_probs=55.5
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CC
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QP 361 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~ 361 (454)
..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++.. .. .++.+ +... ..
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4577899999996 7999999999999999999999999888888776521 11 12221 1110 12
Q ss_pred CCccEEEECCCCC
Q 012866 362 EKGAILANATPLG 374 (454)
Q Consensus 362 ~~~divInat~~g 374 (454)
...|++||+....
T Consensus 86 g~id~li~~ag~~ 98 (278)
T PRK08277 86 GPCDILINGAGGN 98 (278)
T ss_pred CCCCEEEECCCCC
Confidence 4679999988644
No 270
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.32 E-value=0.049 Score=52.56 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEE--------eCCHHHHHHH---
Q 012866 274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF--------DIDFERAKSL--- 342 (454)
Q Consensus 274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~--------nRt~~~a~~l--- 342 (454)
+.|...+++..+...+ ..+++++++.|-|.|.+|+.++..|.+.|++|+.+ |.+.-..++|
T Consensus 11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~ 82 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRI 82 (244)
T ss_dssp HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHH
Confidence 5677777777665311 23588999999999999999999999999865443 5433333444
Q ss_pred HHHhcCCccccc--------ccc---ccCCCCccEEEECCCCCCCCCCCCCCCChhc----cc-CCcEEEEEecCCCCCH
Q 012866 343 ASDVMGAARPFE--------DIL---NFQPEKGAILANATPLGMHPNTDRVPVSEET----LR-DYQLVFDAVYTPRKTR 406 (454)
Q Consensus 343 a~~~~~~~~~~~--------~l~---~~~~~~~divInat~~g~~p~~~~~~i~~~~----l~-~~~~v~D~~y~P~~T~ 406 (454)
.++.+.....+. -+. ++...++||+|-|.--+ .|..+. ++ +.++++.-..+|...+
T Consensus 83 ~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~--------~I~~~~~~~~i~~~akiIvegAN~p~t~~ 154 (244)
T PF00208_consen 83 KEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGN--------VINEDNAPSLIKSGAKIIVEGANGPLTPE 154 (244)
T ss_dssp HHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSST--------SBSCHHHCHCHHTT-SEEEESSSSSBSHH
T ss_pred HHHhCCcccccccccccceeEeccccccccccccEEEEcCCCC--------eeCHHHHHHHHhccCcEEEeCcchhccHH
Confidence 344443111111 011 11224789999874322 133322 22 2589999999998666
Q ss_pred HHHHHHHCCCceeccHH
Q 012866 407 LLKDAEAAGAIIVSGVE 423 (454)
Q Consensus 407 ll~~A~~~G~~~~~Gl~ 423 (454)
-.+.-+++|+.+++..-
T Consensus 155 a~~~L~~rGI~viPD~~ 171 (244)
T PF00208_consen 155 ADEILRERGILVIPDFL 171 (244)
T ss_dssp HHHHHHHTT-EEE-HHH
T ss_pred HHHHHHHCCCEEEcchh
Confidence 66677789998776543
No 271
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.031 Score=57.14 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=85.9
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH------------------HHHHHHHHhcCCccccccccccC
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE------------------RAKSLASDVMGAARPFEDILNFQ 360 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~------------------~a~~la~~~~~~~~~~~~l~~~~ 360 (454)
..++|++|.|-|.|.+|+-++..|.+.|++|+.++-+.. +.+++++.++.+.++-+++-
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~--- 279 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELL--- 279 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccc---
Confidence 458999999999999999999999999998888776655 55556665555544444442
Q ss_pred CCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHH---------HHHHH
Q 012866 361 PEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVE---------MFLRQ 428 (454)
Q Consensus 361 ~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~---------mlv~Q 428 (454)
..++||++-|.--+. |..+ .|.. .+|..-.-+|...+-.+.-.++|+-++++.- -|-++
T Consensus 280 ~~~cDIl~PcA~~n~--------I~~~na~~l~a-k~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~ 350 (411)
T COG0334 280 EVDCDILIPCALENV--------ITEDNADQLKA-KIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWV 350 (411)
T ss_pred cccCcEEcccccccc--------cchhhHHHhhh-cEEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHH
Confidence 246899885553221 3322 2333 3888988888776666666688875554332 22333
Q ss_pred HHHHHHHhcCCCC
Q 012866 429 AIGQFNLFTGKEA 441 (454)
Q Consensus 429 a~~~f~lw~g~~~ 441 (454)
.-.|-..|+..+.
T Consensus 351 qn~~~~~wt~eev 363 (411)
T COG0334 351 QNAQGLYWTEEEV 363 (411)
T ss_pred hhcccCccCHHHH
Confidence 4455556765443
No 272
>PLN02858 fructose-bisphosphate aldolase
Probab=96.31 E-value=0.006 Score=72.27 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
+++.+||.|-||.+++..|...|++|+++||+.++++.+++. +... .++..+ ...++|+||.+.|-.- ......
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-Ga~~--~~s~~e-~~~~aDvVi~~V~~~~--~v~~Vl 398 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENA-GGLA--GNSPAE-VAKDVDVLVIMVANEV--QAENVL 398 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEecCChH--HHHHHH
Confidence 789999999999999999999999999999999999888764 2211 122222 2456899998887321 000110
Q ss_pred CC-h---hcccCCcEEEEEecC-CCCC-HHHHHHHH--CCCce
Q 012866 384 VS-E---ETLRDYQLVFDAVYT-PRKT-RLLKDAEA--AGAII 418 (454)
Q Consensus 384 i~-~---~~l~~~~~v~D~~y~-P~~T-~ll~~A~~--~G~~~ 418 (454)
+. . ..+.++.+++|+.-. |..+ .+-+++++ +|+.+
T Consensus 399 ~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~ 441 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKL 441 (1378)
T ss_pred hchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 11 1 224677899999875 4444 34455556 66543
No 273
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.29 E-value=0.0034 Score=57.07 Aligned_cols=64 Identities=22% Similarity=0.159 Sum_probs=48.3
Q ss_pred EEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---ccccCCCCccEEEECCCC
Q 012866 306 FVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNFQPEKGAILANATPL 373 (454)
Q Consensus 306 vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~~~~~~divInat~~ 373 (454)
|+|+|| |.+|+.++..|.+.|.+|+++.|+++++++ .-+.+. .++.+ +.+ .+.++|.||++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~-al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKA-ALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHH-HHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhh-hhhhcchhhhhhhh
Confidence 689996 999999999999999999999999998877 112111 23333 233 45689999998864
No 274
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.018 Score=56.08 Aligned_cols=72 Identities=25% Similarity=0.200 Sum_probs=51.7
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEE
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILA 368 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divI 368 (454)
+++++|.|+ ||+|++++..|.+.|++|+++.|+.++.+.+.+..+... .++.+ +... .....|+||
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv 83 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV 83 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 578999996 799999999999999999999999998888766543221 12211 1110 123579999
Q ss_pred ECCCCC
Q 012866 369 NATPLG 374 (454)
Q Consensus 369 nat~~g 374 (454)
|+....
T Consensus 84 ~~ag~~ 89 (277)
T PRK06180 84 NNAGYG 89 (277)
T ss_pred ECCCcc
Confidence 987654
No 275
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.0074 Score=58.18 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccc---cccccCCCCccEEEECCCC
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFE---DILNFQPEKGAILANATPL 373 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~divInat~~ 373 (454)
.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.....+......... .++. ++.+ ...+.|++||+...
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~iDilVnnAG~ 89 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDK-QLASLDVLILNHGI 89 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHH-hcCCCCEEEECCcc
Confidence 467899999997 699999999999999999999998632211111111111 1221 2222 34568999998764
Q ss_pred C
Q 012866 374 G 374 (454)
Q Consensus 374 g 374 (454)
+
T Consensus 90 ~ 90 (245)
T PRK12367 90 N 90 (245)
T ss_pred C
Confidence 3
No 276
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.024 Score=59.62 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+..++|+|.||+|++++..|.++|++|+++++..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4579999999999999999999999999999754
No 277
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.27 E-value=0.016 Score=57.85 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=52.9
Q ss_pred eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-c------ccccccccCCCCccEEEECCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-R------PFEDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-~------~~~~l~~~~~~~~divInat~~g~ 375 (454)
++.|||+|.+|.++++.|+..|. +|.+++|+.++++..+.++.... . ...+.+ .+.++|++|.|.+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l~~aDiViita~~~~ 79 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DCKGADVVVITAGANQ 79 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--HhCCCCEEEEccCCCC
Confidence 58999999999999999999994 89999999988876555443211 0 011222 3578999999998765
Q ss_pred CCC
Q 012866 376 HPN 378 (454)
Q Consensus 376 ~p~ 378 (454)
.|.
T Consensus 80 ~~~ 82 (308)
T cd05292 80 KPG 82 (308)
T ss_pred CCC
Confidence 543
No 278
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.023 Score=60.57 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+.+++++|+|.|++|++++..|.++|++|++++...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 457899999999999999999999999999999654
No 279
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.25 E-value=0.12 Score=53.07 Aligned_cols=190 Identities=22% Similarity=0.282 Sum_probs=106.3
Q ss_pred EecCCCCcccCHHHHHHHHHh-cCCCceEEecccC---CHHHHHHhcCCCCCCEEEe---ccCchHHHHhhhhhcCHhHh
Q 012866 178 LISKPVGHSKGPILHNPTFRH-VNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQ 250 (454)
Q Consensus 178 liG~pv~hS~SP~~hn~~f~~-~gl~~~y~~~~~~---~~~~~~~~l~~~~~~G~~V---T~P~K~~v~~~~d~~~~~A~ 250 (454)
+-|-||..-+. .+|+. -|+|..=+.+++. .+.++++.+ .+.|.|+|+ -.|-+..+-..+.+-
T Consensus 97 ~ag~pVmeGKa-----~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~----- 165 (432)
T COG0281 97 LAGKPVMEGKA-----VLFKAFAGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR----- 165 (432)
T ss_pred ccCcchhhhHH-----HHHHHhcCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc-----
Confidence 45566666554 23433 4688654555553 466677766 567999986 345444443333221
Q ss_pred HccceeEEEEeCCCCeEEEeeccH-HHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC--
Q 012866 251 AIAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-- 327 (454)
Q Consensus 251 ~igavNTi~~~~~~g~l~G~NTD~-~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-- 327 (454)
.|.=++.+ | .+|+-.-. .|++++|+- .+..++..++++.|||-+|-+++..|...|+
T Consensus 166 ----~~IPvFhD-D--qqGTaiv~lA~llnalk~-------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~ 225 (432)
T COG0281 166 ----MNIPVFHD-D--QQGTAIVTLAALLNALKL-------------TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKE 225 (432)
T ss_pred ----CCCCcccc-c--ccHHHHHHHHHHHHHHHH-------------hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCc
Confidence 22223331 2 23322222 123444431 2467889999999999999999999999998
Q ss_pred -eEEEEeCCH----HHH--------HHHHHHhcCCcccccccc-ccCCCCccEEEECCCCCCCCCCCCCCCChhcc---c
Q 012866 328 -RVVIFDIDF----ERA--------KSLASDVMGAARPFEDIL-NFQPEKGAILANATPLGMHPNTDRVPVSEETL---R 390 (454)
Q Consensus 328 -~v~i~nRt~----~~a--------~~la~~~~~~~~~~~~l~-~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~ 390 (454)
+|++++|.- .+. .+.+.+ ..++.. +....++|++|-++..|. +.++++ .
T Consensus 226 ~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~------~~~~~~~~~~~~~adv~iG~S~~G~--------~t~e~V~~Ma 291 (432)
T COG0281 226 ENIFVVDRKGLLYDGREDLTMNQKKYAKAIE------DTGERTLDLALAGADVLIGVSGVGA--------FTEEMVKEMA 291 (432)
T ss_pred ccEEEEecCCcccCCCcccccchHHHHHHHh------hhccccccccccCCCEEEEcCCCCC--------cCHHHHHHhc
Confidence 699999851 110 011110 011111 114578999999887653 444543 3
Q ss_pred CCcEEEEEec-CCCCCHHHHHHHHC
Q 012866 391 DYQLVFDAVY-TPRKTRLLKDAEAA 414 (454)
Q Consensus 391 ~~~~v~D~~y-~P~~T~ll~~A~~~ 414 (454)
++.++|=+.- .|+-+| +++++.
T Consensus 292 ~~PiIfalaNP~pEi~P--e~a~~~ 314 (432)
T COG0281 292 KHPIIFALANPTPEITP--EDAKEW 314 (432)
T ss_pred cCCEEeecCCCCccCCH--HHHhhc
Confidence 4567777752 133344 444444
No 280
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.023 Score=59.94 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 337 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~ 337 (454)
.+|+++|+|.|..|++++..|.. |++|++++...+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~ 39 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKA 39 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCC
Confidence 47899999999999999999994 999999996543
No 281
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.22 E-value=0.0071 Score=62.52 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=31.8
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 457899999999999999999999999 99998864
No 282
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.20 E-value=0.014 Score=57.81 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=35.0
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 341 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~ 341 (454)
++|.|||+|-||.+++..|+..|.+|++++++.++.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 57999999999999999999999999999999987653
No 283
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.20 E-value=0.021 Score=54.11 Aligned_cols=74 Identities=27% Similarity=0.389 Sum_probs=53.7
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di 366 (454)
+++++++|.|+ |+.|++++..|.+.|+.|.+..|+.++.+++...++... .++.+ +... .....|+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI 83 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56789999995 799999999999999999999999998888876654321 12221 1110 1245799
Q ss_pred EEECCCCC
Q 012866 367 LANATPLG 374 (454)
Q Consensus 367 vInat~~g 374 (454)
||++....
T Consensus 84 vi~~ag~~ 91 (245)
T PRK12936 84 LVNNAGIT 91 (245)
T ss_pred EEECCCCC
Confidence 99997653
No 284
>PLN02477 glutamate dehydrogenase
Probab=96.19 E-value=0.071 Score=55.22 Aligned_cols=130 Identities=21% Similarity=0.336 Sum_probs=81.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeCC----------HHHHH
Q 012866 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID----------FERAK 340 (454)
Q Consensus 272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nRt----------~~~a~ 340 (454)
.-+.|...+++..+.. .+.+++|++|+|.|.|.+|+.++..|.+.|++|+ |.+.+ .+...
T Consensus 184 aTg~Gv~~~~~~~~~~---------~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~ 254 (410)
T PLN02477 184 ATGRGVVFATEALLAE---------HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALR 254 (410)
T ss_pred cchHHHHHHHHHHHHH---------cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHH
Confidence 3467777777776652 2357899999999999999999999999999776 77776 55554
Q ss_pred HHHHHhcC-------CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc--cCCcEEEEEecCCCCCHHHHH-
Q 012866 341 SLASDVMG-------AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL--RDYQLVFDAVYTPRKTRLLKD- 410 (454)
Q Consensus 341 ~la~~~~~-------~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l--~~~~~v~D~~y~P~~T~ll~~- 410 (454)
+..++.+. ..++-+++ ...++||+|-|.--+. |..+.. -..++|+.-.-+|. |+--.+
T Consensus 255 ~~k~~~g~l~~~~~a~~i~~~e~---l~~~~DvliP~Al~~~--------I~~~na~~i~ak~I~egAN~p~-t~ea~~~ 322 (410)
T PLN02477 255 KHVAEGGGLKGFPGGDPIDPDDI---LVEPCDVLIPAALGGV--------INKENAADVKAKFIVEAANHPT-DPEADEI 322 (410)
T ss_pred HHHHhcCchhccccceEecCccc---eeccccEEeecccccc--------CCHhHHHHcCCcEEEeCCCCCC-CHHHHHH
Confidence 43332221 11122222 2247899986653221 333221 14578889988887 653333
Q ss_pred HHHCCCceeccH
Q 012866 411 AEAAGAIIVSGV 422 (454)
Q Consensus 411 A~~~G~~~~~Gl 422 (454)
-+++|+.+++..
T Consensus 323 L~~rGI~~~PD~ 334 (410)
T PLN02477 323 LRKKGVVVLPDI 334 (410)
T ss_pred HHHCCcEEEChH
Confidence 345777665543
No 285
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.19 E-value=0.018 Score=55.67 Aligned_cols=73 Identities=22% Similarity=0.189 Sum_probs=48.6
Q ss_pred CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CCC
Q 012866 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~---~~~~~---l~~~------~~~ 362 (454)
+++|.++|.|++ |+|++++..|++.|++|++..|+. +.+++++++++... +++.+ ++.+ ...
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 568999999985 799999999999999999988874 23444544443221 12221 1110 134
Q ss_pred CccEEEECCCC
Q 012866 363 KGAILANATPL 373 (454)
Q Consensus 363 ~~divInat~~ 373 (454)
..|++||+...
T Consensus 86 ~iDilVnnag~ 96 (260)
T PRK06603 86 SFDFLLHGMAF 96 (260)
T ss_pred CccEEEEcccc
Confidence 68999996643
No 286
>PRK07411 hypothetical protein; Validated
Probab=96.19 E-value=0.0071 Score=62.48 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=31.9
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999999999999999999999 99998864
No 287
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.17 E-value=0.013 Score=62.59 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=36.3
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
-++|.|||+|-||+.|+..|+..|.+|++++|+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA 44 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 3679999999999999999999999999999999987653
No 288
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.17 E-value=0.013 Score=56.77 Aligned_cols=73 Identities=27% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCc--ccccc---c-------cccCCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA--RPFED---I-------LNFQPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~--~~~~~---l-------~~~~~~~~di 366 (454)
+++++++|+|+ ||.|++++..|.+.|++|.++.|+.++++++.+.++ ... +++.+ + .+ .....|+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~ 81 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA-DLGPIDV 81 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH-HcCCCCE
Confidence 45789999996 799999999999999999999999999888877664 211 22222 1 11 1245799
Q ss_pred EEECCCCC
Q 012866 367 LANATPLG 374 (454)
Q Consensus 367 vInat~~g 374 (454)
+||+...+
T Consensus 82 li~~ag~~ 89 (273)
T PRK07825 82 LVNNAGVM 89 (273)
T ss_pred EEECCCcC
Confidence 99987653
No 289
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.17 E-value=0.014 Score=48.93 Aligned_cols=67 Identities=30% Similarity=0.296 Sum_probs=49.4
Q ss_pred EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCC
Q 012866 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 306 vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~ 372 (454)
++|+|.|..|+.++..|.+.+.+|+++++++++.+++.++.-. ...+.+.+.+..+.+++.+|-+|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence 6899999999999999999666999999999999888765411 111222333334677899988886
No 290
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.17 E-value=0.018 Score=58.29 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhcCCcccccc--ccc-cCCCCccEEEECCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI---DFERAKSLASDVMGAARPFED--ILN-FQPEKGAILANATPL 373 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nR---t~~~a~~la~~~~~~~~~~~~--l~~-~~~~~~divInat~~ 373 (454)
.+++|+|+|+|++|..++..++..|++|++++| +.++ .+++++++...+...+ +.+ .....+|++|+++..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~-~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~ 248 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPK-ADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGV 248 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCC
Confidence 578999999999999999988899999999998 4555 4477788765432211 100 012458999999863
No 291
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.16 E-value=0.022 Score=54.26 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=33.0
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+++|+++|+|+ ||+|++++..|.+.|++|++++|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 57899999997 6999999999999999999999975
No 292
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.15 E-value=0.013 Score=56.13 Aligned_cols=48 Identities=35% Similarity=0.526 Sum_probs=42.2
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
.+++|++||+|+ ||.|++++..|.+.|++|++.+|+.++.+++.+++.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR 54 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence 467899999996 699999999999999999999999988888776653
No 293
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.016 Score=55.47 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=50.0
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---C--c--ccccc---ccccCCCCccEEEECC
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---A--A--RPFED---ILNFQPEKGAILANAT 371 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~--~--~~~~~---l~~~~~~~~divInat 371 (454)
+++++|.|+ ||.|++++..|.+.|++|++..|+.++++++.+.... . . .++.+ +........|+||++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 468999996 7999999999999999999999998887777654321 1 1 12222 1111113689999987
Q ss_pred CC
Q 012866 372 PL 373 (454)
Q Consensus 372 ~~ 373 (454)
..
T Consensus 82 g~ 83 (257)
T PRK09291 82 GI 83 (257)
T ss_pred Cc
Confidence 54
No 294
>PRK09186 flagellin modification protein A; Provisional
Probab=96.10 E-value=0.014 Score=55.81 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=40.4
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL 48 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence 5789999996 69999999999999999999999999988877665
No 295
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.015 Score=55.20 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=41.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|+|+ ||.|++++..|.+.|++|++++|+.++++++.+++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 67899999996 79999999999999999999999999888877665
No 296
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.09 E-value=0.016 Score=56.17 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=48.5
Q ss_pred CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CCC
Q 012866 301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~---~~~~~---l~~~------~~~ 362 (454)
+++|.++|.|+ +|+|++++..|++.|++|++..|+. ++++++.++.+... +++.+ ++.+ ...
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD 83 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence 56899999994 5999999999999999998886653 34444544433211 12221 1110 124
Q ss_pred CccEEEECCCCC
Q 012866 363 KGAILANATPLG 374 (454)
Q Consensus 363 ~~divInat~~g 374 (454)
..|++||+...+
T Consensus 84 ~iD~lVnnAG~~ 95 (261)
T PRK08690 84 GLDGLVHSIGFA 95 (261)
T ss_pred CCcEEEECCccC
Confidence 689999998654
No 297
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.09 E-value=0.014 Score=52.77 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=45.4
Q ss_pred CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 012866 300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348 (454)
Q Consensus 300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~ 348 (454)
.+.|+.+++.|+| |+|++++.+|++.|++|.-+.|+++...+|.++...
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~ 53 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPS 53 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCc
Confidence 4678999999999 999999999999999999999999999999988765
No 298
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.09 E-value=0.013 Score=58.92 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=41.1
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.|+.++|.|| ||.|++++..|++.|++|.+++|+.++.+++++++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l 97 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI 97 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence 5899999996 69999999999999999999999999998887765
No 299
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.09 E-value=0.028 Score=58.53 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=65.2
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-ccccccc----------cc-cCCCCccEEEECC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-ARPFEDI----------LN-FQPEKGAILANAT 371 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-~~~~~~l----------~~-~~~~~~divInat 371 (454)
+++.|||.|-+|..++..|++.|.+|+.++|++++.+.+....-.. ...++++ .. ...+++|++|-|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 5799999999999999999999999999999999988754211000 0001100 00 0134689999999
Q ss_pred CCCCCCCCCC--CCCC---h---hcccCCcEEEEEecCCC-CCHHH
Q 012866 372 PLGMHPNTDR--VPVS---E---ETLRDYQLVFDAVYTPR-KTRLL 408 (454)
Q Consensus 372 ~~g~~p~~~~--~~i~---~---~~l~~~~~v~D~~y~P~-~T~ll 408 (454)
|....++... ..+. . ..++++.+|++..-.|. .|..+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 8654222110 0111 0 12467788888877655 34333
No 300
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.015 Score=55.90 Aligned_cols=47 Identities=34% Similarity=0.492 Sum_probs=42.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
+++|+++|.|+ ||+|++++..|.+.|++|+++.|+.++.+++++++.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 67899999996 699999999999999999999999999888877663
No 301
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.016 Score=55.17 Aligned_cols=46 Identities=35% Similarity=0.567 Sum_probs=40.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|+|+ |++|++++.+|.+.|++|++++|+.+..+.+.+++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI 50 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56789999997 89999999999999999999999988777766554
No 302
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.016 Score=55.80 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----Cc----ccccccc---cc--CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AA----RPFEDIL---NF--QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~----~~~~~l~---~~--~~~~~di 366 (454)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++.+++.. .. .++.+.. .. .....|+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 56899999997 6999999999999999999999999988887665431 11 1222111 10 1346899
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+|++...
T Consensus 85 lv~~ag~ 91 (259)
T PRK06125 85 LVNNAGA 91 (259)
T ss_pred EEECCCC
Confidence 9998753
No 303
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.038 Score=58.22 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=29.6
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+++|+|.|++|++++..|.+.|++|+++++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999764
No 304
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.06 E-value=0.014 Score=58.31 Aligned_cols=70 Identities=34% Similarity=0.443 Sum_probs=54.6
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
+.-+.||+++|.|-|-.||.++..|..+|++|.|+.-++-+|-+.+=+ |..+.++++ ....+|++|.||.
T Consensus 204 n~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md-Gf~V~~m~~----Aa~~gDifiT~TG 273 (420)
T COG0499 204 NVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD-GFRVMTMEE----AAKTGDIFVTATG 273 (420)
T ss_pred ceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc-CcEEEEhHH----hhhcCCEEEEccC
Confidence 466889999999999999999999999999999999999887654321 223444444 3345799998884
No 305
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.016 Score=55.47 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=41.2
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 50 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEI 50 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56789999996 69999999999999999999999999988887665
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.04 E-value=0.022 Score=57.41 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc--ccccc--CCCCccEEEECCCCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE--DILNF--QPEKGAILANATPLGM 375 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~--~l~~~--~~~~~divInat~~g~ 375 (454)
.+++|+|+|+|++|.+++..++.+|+ +|+++.+++++.+ +++++|... ++.. ++.+. ....+|++|+++....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS-LAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH-HHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence 57899999999999999998889999 7999999988864 667787643 2221 11110 1124899999986310
Q ss_pred CCCCCCCCCChhcccCCcEEEEEec
Q 012866 376 HPNTDRVPVSEETLRDYQLVFDAVY 400 (454)
Q Consensus 376 ~p~~~~~~i~~~~l~~~~~v~D~~y 400 (454)
...-....++++..++.+-.
T Consensus 248 -----~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 -----SINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----HHHHHHHHhhcCCEEEEEcc
Confidence 00011234666666666654
No 307
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.04 E-value=0.083 Score=55.26 Aligned_cols=130 Identities=22% Similarity=0.212 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEE-e----------CCHHHHH
Q 012866 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF-D----------IDFERAK 340 (454)
Q Consensus 272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~-n----------Rt~~~a~ 340 (454)
.-+.|...+++..+.+ .+.+++|++|.|.|.|.+|+.++..|.+.|++|+.+ + -+.+...
T Consensus 210 aTg~Gv~~~~~~~~~~---------~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~ 280 (445)
T PRK09414 210 ATGYGLVYFAEEMLKA---------RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLK 280 (445)
T ss_pred cccHHHHHHHHHHHHh---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHH
Confidence 4566777777766652 235689999999999999999999999999977655 5 3555444
Q ss_pred HHHHHhc-----------CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---ccc--CCcEEEEEecCCCC
Q 012866 341 SLASDVM-----------GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVYTPRK 404 (454)
Q Consensus 341 ~la~~~~-----------~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~--~~~~v~D~~y~P~~ 404 (454)
+..+... ...++-+++ ...++||+|-|+.-+. +..+ .+. ..++|+.-.-+|.
T Consensus 281 ~~k~~~~~~l~~~~~~~~~~~i~~~~i---~~~d~DVliPaAl~n~--------It~~~a~~i~~~~akiIvEgAN~p~- 348 (445)
T PRK09414 281 EIKEVRRGRISEYAEEFGAEYLEGGSP---WSVPCDIALPCATQNE--------LDEEDAKTLIANGVKAVAEGANMPS- 348 (445)
T ss_pred HHHHhcCCchhhhhhhcCCeecCCccc---cccCCcEEEecCCcCc--------CCHHHHHHHHHcCCeEEEcCCCCCC-
Confidence 4332211 111111222 2246899998886432 2322 232 4578999998887
Q ss_pred CHH-HHHHHHCCCceeccH
Q 012866 405 TRL-LKDAEAAGAIIVSGV 422 (454)
Q Consensus 405 T~l-l~~A~~~G~~~~~Gl 422 (454)
|+- -+.-+++|+.+++..
T Consensus 349 t~~A~~~L~~rGI~~vPD~ 367 (445)
T PRK09414 349 TPEAIEVFLEAGVLFAPGK 367 (445)
T ss_pred CHHHHHHHHHCCcEEECch
Confidence 543 233345777665543
No 308
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=96.03 E-value=0.02 Score=55.39 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC
Q 012866 301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt 335 (454)
+++|.++|.|+ +|.|++++..|++.|++|++..|+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 56899999997 499999999999999999887653
No 309
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=96.03 E-value=0.019 Score=53.29 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=53.0
Q ss_pred CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Ccccccccc------cc---CCCCccEE
Q 012866 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AARPFEDIL------NF---QPEKGAIL 367 (454)
Q Consensus 301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~~~~~~l~------~~---~~~~~div 367 (454)
..|.++||.|.| |+|++.+..+.++|.+|.|++|+.++.++....... .++++.|.. ++ .-.+-+++
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl 82 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL 82 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence 346789999865 999999999999999999999999998877655432 223333321 11 22456899
Q ss_pred EECCCC
Q 012866 368 ANATPL 373 (454)
Q Consensus 368 Inat~~ 373 (454)
||+...
T Consensus 83 iNNAGI 88 (245)
T COG3967 83 INNAGI 88 (245)
T ss_pred eecccc
Confidence 998754
No 310
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.03 E-value=0.022 Score=54.68 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=33.0
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
.+++|+++|.|+ ||+|++++..|++.|++|++++|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 367899999996 5999999999999999999999864
No 311
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.02 E-value=0.019 Score=57.77 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=52.2
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------C-ccc-cccccccCCCCccEEEECC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------A-ARP-FEDILNFQPEKGAILANAT 371 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~-~~~-~~~l~~~~~~~~divInat 371 (454)
+.+++.|||+|.+|.++++.++..|. +|+++++++++++.-+-++.. . .+. ..+.+ .+.++|+||+|.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~--~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE--DIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH--HhCCCCEEEECC
Confidence 34789999999999999999999996 999999998865432222111 1 011 12332 357899999988
Q ss_pred CCCCCCC
Q 012866 372 PLGMHPN 378 (454)
Q Consensus 372 ~~g~~p~ 378 (454)
..+-.|.
T Consensus 83 g~~~~~~ 89 (321)
T PTZ00082 83 GLTKRPG 89 (321)
T ss_pred CCCCCCC
Confidence 7655443
No 312
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.02 E-value=0.11 Score=50.31 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=78.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHH
Q 012866 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAK 340 (454)
Q Consensus 272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~ 340 (454)
--+.|...+++..+.. .+.+++|++|+|-|-|.+|+.++..|.++|++|+ |.+. +.+..+
T Consensus 16 aTg~Gv~~~~~~~~~~---------~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~ 86 (254)
T cd05313 16 ATGYGLVYFVEEMLKD---------RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLA 86 (254)
T ss_pred hhHHHHHHHHHHHHHh---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHH
Confidence 3466777777776652 2467899999999999999999999999999766 6552 223332
Q ss_pred HHHHH---hc------------CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---ccc--CCcEEEEEec
Q 012866 341 SLASD---VM------------GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVY 400 (454)
Q Consensus 341 ~la~~---~~------------~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~--~~~~v~D~~y 400 (454)
.+.+. -+ ...++-+++ ....+||+|-|.--+ .|..+ .+. ..++|+.-.-
T Consensus 87 ~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~---~~~~~DIliPcAl~~--------~I~~~na~~i~~~~ak~I~EgAN 155 (254)
T cd05313 87 ELKEIKEVRRGRVSEYAKKYGTAKYFEGKKP---WEVPCDIAFPCATQN--------EVDAEDAKLLVKNGCKYVAEGAN 155 (254)
T ss_pred HHHHHHHhcCCcHHHHhhcCCCCEEeCCcch---hcCCCcEEEeccccc--------cCCHHHHHHHHHcCCEEEEeCCC
Confidence 22111 11 111111222 224689999665322 24433 342 4578999988
Q ss_pred CCCCCH-HHHHHHHCCCceeccH
Q 012866 401 TPRKTR-LLKDAEAAGAIIVSGV 422 (454)
Q Consensus 401 ~P~~T~-ll~~A~~~G~~~~~Gl 422 (454)
+|. |+ --+.-+++|+.+++..
T Consensus 156 ~p~-t~~a~~~L~~rGI~vvPD~ 177 (254)
T cd05313 156 MPC-TAEAIEVFRQAGVLFAPGK 177 (254)
T ss_pred CCC-CHHHHHHHHHCCcEEECch
Confidence 886 54 2333346787665543
No 313
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.017 Score=55.78 Aligned_cols=47 Identities=34% Similarity=0.366 Sum_probs=41.2
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARL 52 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 467899999997 59999999999999999999999998877766554
No 314
>PRK06484 short chain dehydrogenase; Validated
Probab=96.01 E-value=0.016 Score=61.98 Aligned_cols=73 Identities=27% Similarity=0.339 Sum_probs=54.2
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di 366 (454)
.++|.++|.|+ +|+|++++..|.+.|++|+++.|+.++.++++++++... +++.+ +..+ .....|+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV 82 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 35789999997 599999999999999999999999999988888775432 12211 1110 1245799
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+||+...
T Consensus 83 li~nag~ 89 (520)
T PRK06484 83 LVNNAGV 89 (520)
T ss_pred EEECCCc
Confidence 9998654
No 315
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.017 Score=55.18 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=40.7
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI 51 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367899999996 69999999999999999999999998877766554
No 316
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.00 E-value=0.021 Score=55.28 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866 301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDI---DFERAKSLASDVMGA-A--RPFED---ILNF------QPE 362 (454)
Q Consensus 301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nR---t~~~a~~la~~~~~~-~--~~~~~---l~~~------~~~ 362 (454)
+++|.++|.|+ +|+|++++..|++.|++|++..| +.++.+++.++++.. . +++.+ +..+ ...
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence 56899999994 59999999999999999988754 356666666655421 1 12211 1110 125
Q ss_pred CccEEEECCCC
Q 012866 363 KGAILANATPL 373 (454)
Q Consensus 363 ~~divInat~~ 373 (454)
..|++||+...
T Consensus 84 ~iD~lvnnAG~ 94 (260)
T PRK06997 84 GLDGLVHSIGF 94 (260)
T ss_pred CCcEEEEcccc
Confidence 68999998754
No 317
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.00 E-value=0.011 Score=57.00 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCc--ccccc----ccccCC-CCccEEEEC
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAA--RPFED----ILNFQP-EKGAILANA 370 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~--~~~~~----l~~~~~-~~~divIna 370 (454)
..++++++|+|+ |+.|++++..|.+.|++|+.+.|+.++++++.... +... .++.+ +.+ .+ .+.|+||++
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~-~~~~~~d~vi~~ 92 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVE-AIGDDSDAVICA 92 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHH-HhhcCCCEEEEC
Confidence 356789999996 89999999999999999999999988876553321 1111 12222 212 23 468999988
Q ss_pred CCCC
Q 012866 371 TPLG 374 (454)
Q Consensus 371 t~~g 374 (454)
++..
T Consensus 93 ~g~~ 96 (251)
T PLN00141 93 TGFR 96 (251)
T ss_pred CCCC
Confidence 7643
No 318
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.99 E-value=0.0052 Score=54.00 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=33.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLAS 344 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~ 344 (454)
+|+|+|+||.|..++..|...|+ ++++++.+.-....+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r 41 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNR 41 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhc
Confidence 48999999999999999999999 99999987544444433
No 319
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.98 E-value=0.16 Score=53.06 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=78.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeCC----------HHHHH
Q 012866 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID----------FERAK 340 (454)
Q Consensus 272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nRt----------~~~a~ 340 (454)
-.+.|.+..++..+.. .+.+++|++|+|-|.|.+|..++..|.++|++|+ |.+.+ .++..
T Consensus 215 ATG~Gv~~~~~~~l~~---------~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~ 285 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKK---------LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLA 285 (454)
T ss_pred ccHHHHHHHHHHHHHH---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHH
Confidence 4677888888776652 2357899999999999999999999999999766 77776 55553
Q ss_pred HHHHH----------hc-----CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc-----CCcEEEEEec
Q 012866 341 SLASD----------VM-----GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR-----DYQLVFDAVY 400 (454)
Q Consensus 341 ~la~~----------~~-----~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~-----~~~~v~D~~y 400 (454)
.+.+. +. ...++-+++ ....+||++-|.--+ .|..+... ...+|+.-.-
T Consensus 286 ~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~---~~~~cDI~iPcA~~n--------~I~~~~a~~l~~~~ak~V~EgAN 354 (454)
T PTZ00079 286 YLMDLKNVKRGRLKEYAKHSSTAKYVPGKKP---WEVPCDIAFPCATQN--------EINLEDAKLLIKNGCKLVAEGAN 354 (454)
T ss_pred HHHHHHhhcCCcHHhhhhccCCcEEeCCcCc---ccCCccEEEeccccc--------cCCHHHHHHHHHcCCeEEEecCC
Confidence 33221 10 011111111 123589988654321 24433222 4578888887
Q ss_pred CCCCCHHHHHHHHCCCceec
Q 012866 401 TPRKTRLLKDAEAAGAIIVS 420 (454)
Q Consensus 401 ~P~~T~ll~~A~~~G~~~~~ 420 (454)
.|-...-.+.-+++|+.+++
T Consensus 355 ~p~t~eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 355 MPTTIEATHLFKKNGVIFCP 374 (454)
T ss_pred CCCCHHHHHHHHHCCcEEEC
Confidence 77533333333456664443
No 320
>PRK06720 hypothetical protein; Provisional
Probab=95.97 E-value=0.021 Score=51.84 Aligned_cols=47 Identities=34% Similarity=0.641 Sum_probs=40.7
Q ss_pred CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.++++.++|.|++ |+|++++..|.+.|++|.+++|+.+.+++.++++
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l 60 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI 60 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 4678999999975 8999999999999999999999988877665554
No 321
>PRK06484 short chain dehydrogenase; Validated
Probab=95.96 E-value=0.019 Score=61.33 Aligned_cols=74 Identities=27% Similarity=0.339 Sum_probs=55.2
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA 365 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d 365 (454)
...+|.++|.|+ ||+|++++..|.+.|++|++.+|+.++.++++++++... .++.+ +..+ .....|
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD 345 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 356899999996 699999999999999999999999999999888775432 12221 1110 124579
Q ss_pred EEEECCCC
Q 012866 366 ILANATPL 373 (454)
Q Consensus 366 ivInat~~ 373 (454)
++||+...
T Consensus 346 ~li~nAg~ 353 (520)
T PRK06484 346 VLVNNAGI 353 (520)
T ss_pred EEEECCCC
Confidence 99998754
No 322
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.96 E-value=0.051 Score=60.31 Aligned_cols=193 Identities=19% Similarity=0.249 Sum_probs=106.7
Q ss_pred HHHhc-CCCceEEecccCCHHHHHHhc--CCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEee
Q 012866 195 TFRHV-NYNGIYVPMFVDDLKKFFSTY--SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYN 271 (454)
Q Consensus 195 ~f~~~-gl~~~y~~~~~~~~~~~~~~l--~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~N 271 (454)
+|+.+ |+|..=+.++.+|.++|++.. ..+.|.|+|.-==--...+..++++-+ ..|.-++.+ | .+|+-
T Consensus 95 l~~~~~gid~~~i~~~~~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~------~~~ip~f~D-D--~~GTa 165 (752)
T PRK07232 95 LFKKFAGIDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRE------RMDIPVFHD-D--QHGTA 165 (752)
T ss_pred HHHhhcCCCccccccCCCCHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHH------hcCCCeecc-c--cchHH
Confidence 34444 477433333446888888766 357899988632222223333333221 123333441 2 33332
Q ss_pred ccHH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHH---HH
Q 012866 272 TDCE-ASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FER---AK 340 (454)
Q Consensus 272 TD~~-G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt----~~~---a~ 340 (454)
.-.. |++++++- .+..+++.++++.|||.+|-+++..|...|. +|+++++. .+| ..
T Consensus 166 ~v~lA~l~na~~~-------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~ 232 (752)
T PRK07232 166 IISAAALLNALEL-------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMD 232 (752)
T ss_pred HHHHHHHHHHHHH-------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCccccc
Confidence 2222 23444431 1356788999999999999999999999998 69988863 111 11
Q ss_pred HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecCCC--CCHHHHHHHHC-
Q 012866 341 SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYTPR--KTRLLKDAEAA- 414 (454)
Q Consensus 341 ~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~P~--~T~ll~~A~~~- 414 (454)
..-..|-.. ....+|.+ .++.+|++|-++..| .+.++++ .+..++|=+. ||. -|| ++|.+.
T Consensus 233 ~~k~~~a~~-~~~~~l~~-~i~~~~v~iG~s~~g--------~~~~~~v~~M~~~piifals-NP~~E~~p--~~a~~~~ 299 (752)
T PRK07232 233 EWKAAYAVD-TDARTLAE-AIEGADVFLGLSAAG--------VLTPEMVKSMADNPIIFALA-NPDPEITP--EEAKAVR 299 (752)
T ss_pred HHHHHHhcc-CCCCCHHH-HHcCCCEEEEcCCCC--------CCCHHHHHHhccCCEEEecC-CCCccCCH--HHHHHhc
Confidence 111112111 12234544 456689999776533 2556654 3578898887 443 365 556655
Q ss_pred -CCceeccH
Q 012866 415 -GAIIVSGV 422 (454)
Q Consensus 415 -G~~~~~Gl 422 (454)
|+.+..|.
T Consensus 300 ~~~i~atGr 308 (752)
T PRK07232 300 PDAIIATGR 308 (752)
T ss_pred CCEEEEECC
Confidence 35555554
No 323
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.96 E-value=0.023 Score=54.47 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+++|+++|+|+ |+.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 4578999999996 69999999999999999999999998887776655
No 324
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.95 E-value=0.016 Score=57.32 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=47.6
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--------cc---cccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RP---FEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--------~~---~~~l~~~~~~~~divInat~~ 373 (454)
+++|+|+|.+|.+++..|++.|.+|+++.| .++.+++.+. +... .. ..+..+ ....+|+||-|++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vilavk~ 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-GLVIRSDHGDAVVPGPVITDPEE-LTGPFDLVILAVKA 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-CeEEEeCCCeEEecceeecCHHH-ccCCCCEEEEEecc
Confidence 589999999999999999999999999999 7777776542 2110 00 111112 23568999888875
Q ss_pred C
Q 012866 374 G 374 (454)
Q Consensus 374 g 374 (454)
.
T Consensus 79 ~ 79 (305)
T PRK12921 79 Y 79 (305)
T ss_pred c
Confidence 3
No 325
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.93 E-value=0.029 Score=53.66 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=50.9
Q ss_pred eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEEC
Q 012866 305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILANA 370 (454)
Q Consensus 305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divIna 370 (454)
+++|+|+ ||.|++++..|.+.|++|++++|+.++++++...++... .++.+ +.+. ...+.|++|++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 6899996 799999999999999999999999999888877654321 12221 1110 12368999998
Q ss_pred CCCC
Q 012866 371 TPLG 374 (454)
Q Consensus 371 t~~g 374 (454)
....
T Consensus 82 ag~~ 85 (248)
T PRK10538 82 AGLA 85 (248)
T ss_pred CCcc
Confidence 8643
No 326
>PRK09242 tropinone reductase; Provisional
Probab=95.93 E-value=0.02 Score=54.94 Aligned_cols=48 Identities=27% Similarity=0.328 Sum_probs=42.7
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+.+++|+++|+|+ ||+|++++..|.+.|++|+++.|+.++++++.+++
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l 53 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDEL 53 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 3577899999996 69999999999999999999999999988887665
No 327
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.93 E-value=0.02 Score=60.08 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=53.0
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~ 373 (454)
+++|+|+|..|+.++..|.+.|.+|++++|++++.+++.+..+...+ +.+.+.+..+.++|.+|.+|+-
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 68999999999999999999999999999999999888764443221 1122333236779999998874
No 328
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.92 E-value=0.016 Score=58.15 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=49.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCc---ccc-------ccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAA---RPF-------EDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~---~~~-------~~l~~~~~~~~divInat~~ 373 (454)
++.|||+|.+|.+++..|++.|.+|++++|+.+.++++.+.- +... ..+ .++.+.....+|+||-|++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 488999999999999999999999999999998888886531 1110 001 11212012467999988875
Q ss_pred C
Q 012866 374 G 374 (454)
Q Consensus 374 g 374 (454)
.
T Consensus 82 ~ 82 (326)
T PRK14620 82 Q 82 (326)
T ss_pred H
Confidence 3
No 329
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.018 Score=57.05 Aligned_cols=47 Identities=30% Similarity=0.468 Sum_probs=40.7
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|+++|.|+ ||+|++++..|++.|++|+++.|+.+++++..+++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999996 79999999999999999999999998877665444
No 330
>PRK08324 short chain dehydrogenase; Validated
Probab=95.89 E-value=0.019 Score=63.74 Aligned_cols=75 Identities=32% Similarity=0.438 Sum_probs=55.1
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----ccccc---cccc------CCCC
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFED---ILNF------QPEK 363 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~~---l~~~------~~~~ 363 (454)
.+.+++++|+|+ ||+|++++..|.+.|++|++++|+.++++++++.++. .. .++.+ +... ....
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999995 8999999999999999999999999998888777643 11 12211 1110 1235
Q ss_pred ccEEEECCCCC
Q 012866 364 GAILANATPLG 374 (454)
Q Consensus 364 ~divInat~~g 374 (454)
.|+||++....
T Consensus 499 iDvvI~~AG~~ 509 (681)
T PRK08324 499 VDIVVSNAGIA 509 (681)
T ss_pred CCEEEECCCCC
Confidence 79999988643
No 331
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.87 E-value=0.021 Score=57.33 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcCC---c--ccccc---ccccCCCCccEEEE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGA---A--RPFED---ILNFQPEKGAILAN 369 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G--~~v~i~nRt~~~a~~la~~~~~~---~--~~~~~---l~~~~~~~~divIn 369 (454)
+++++++|+|+ |+.|++++..|.+.| .+|++++|+..+...+...+... . .++.+ +.+ ...+.|+||+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~-~~~~iD~Vih 80 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTR-ALRGVDYVVH 80 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHH-HHhcCCEEEE
Confidence 35789999996 899999999999886 58999999877665555554321 1 12222 222 2456899999
Q ss_pred CCCC
Q 012866 370 ATPL 373 (454)
Q Consensus 370 at~~ 373 (454)
+...
T Consensus 81 ~Ag~ 84 (324)
T TIGR03589 81 AAAL 84 (324)
T ss_pred Cccc
Confidence 8754
No 332
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.025 Score=54.10 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=42.2
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++.+++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3577899999996 69999999999999999999999998888877765
No 333
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.02 Score=61.14 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=36.3
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
++|.|||+|-||+.|+..|+..|++|++++|+++.+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~ 46 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAA 46 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 679999999999999999999999999999999987764
No 334
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.84 E-value=0.016 Score=54.80 Aligned_cols=46 Identities=41% Similarity=0.694 Sum_probs=39.7
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+++++|+|+ |+.|+.++..|.+.|.+|.+++|+.++.+.+...+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAEL 49 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHH
Confidence 34688999996 79999999999999999999999998877766554
No 335
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.84 E-value=0.025 Score=50.26 Aligned_cols=44 Identities=34% Similarity=0.501 Sum_probs=38.5
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhc
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDID--FERAKSLASDVM 347 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt--~~~a~~la~~~~ 347 (454)
|.++|+|+ ||+|++++.+|.+.|. .|.++.|+ .++++++..++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~ 48 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK 48 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc
Confidence 57999996 6999999999999988 89999999 788888877664
No 336
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.022 Score=54.48 Aligned_cols=47 Identities=36% Similarity=0.546 Sum_probs=41.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
+.+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID 50 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999996 699999999999999999999999988888877653
No 337
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.82 E-value=0.022 Score=54.68 Aligned_cols=73 Identities=37% Similarity=0.380 Sum_probs=53.7
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 366 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di 366 (454)
+.+++++|+|+ ||.|++++..|++.|++|++++|+.++.+++.++++... .++.+ +... .....|+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56789999996 799999999999999999999999999888877664321 12211 1110 1245799
Q ss_pred EEECCCC
Q 012866 367 LANATPL 373 (454)
Q Consensus 367 vInat~~ 373 (454)
+|++...
T Consensus 84 li~~ag~ 90 (257)
T PRK07067 84 LFNNAAL 90 (257)
T ss_pred EEECCCc
Confidence 9998754
No 338
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.82 E-value=0.025 Score=54.69 Aligned_cols=48 Identities=29% Similarity=0.345 Sum_probs=42.1
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+++|+++|+|+ ||+|++++..|++.|++|++.+|+.++.+++.+.+
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 4577899999997 59999999999999999999999998887776655
No 339
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.81 E-value=0.045 Score=52.71 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHH-----HHHHHhcCCccccccccccCCCCccEEEECC
Q 012866 298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAK-----SLASDVMGAARPFEDILNFQPEKGAILANAT 371 (454)
Q Consensus 298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~-----~la~~~~~~~~~~~~l~~~~~~~~divInat 371 (454)
+.++++..|.|+|+ |-+|.+|+.-|+.+++.+.++-|+.++-. .+.++++...+.-.+.+ .+...+++..|+
T Consensus 162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~--~~~e~i~v~vAs 239 (351)
T COG5322 162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYA--LPQEDILVWVAS 239 (351)
T ss_pred CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccc--ccccceEEEEee
Confidence 57888999999997 77899999999999887777777655432 23333333222111111 233344454444
Q ss_pred CCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCC-Cceecc
Q 012866 372 PLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAG-AIIVSG 421 (454)
Q Consensus 372 ~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G-~~~~~G 421 (454)
+ .+. ..|.++.++++.+++|--| |++-. ...+..| ..+++|
T Consensus 240 ~---~~g---~~I~pq~lkpg~~ivD~g~-P~dvd--~~vk~~~~V~Ii~G 281 (351)
T COG5322 240 M---PKG---VEIFPQHLKPGCLIVDGGY-PKDVD--TSVKNVGGVRIIPG 281 (351)
T ss_pred c---CCC---ceechhhccCCeEEEcCCc-Ccccc--cccccCCCeEEecC
Confidence 3 121 2477889999999999998 54321 1223333 555554
No 340
>PRK08589 short chain dehydrogenase; Validated
Probab=95.81 E-value=0.023 Score=55.26 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=39.6
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+ ++++++++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~ 49 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKI 49 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHH
Confidence 56899999997 699999999999999999999999 7777776655
No 341
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.80 E-value=0.022 Score=63.72 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=72.9
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
+++.|||+|.+|.+++..|.+.|. +|++++|+.++++.. .+++.......++.+ .+.++|+||.|+|......
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-~~~g~~~~~~~~~~~-~~~~aDvVilavp~~~~~~--- 78 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-VSLGVIDRGEEDLAE-AVSGADVIVLAVPVLAMEK--- 78 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-HHCCCCCcccCCHHH-HhcCCCEEEECCCHHHHHH---
Confidence 679999999999999999999983 899999998886654 344432111223333 3567899999998642211
Q ss_pred CCCC--hhcccCCcEEEEEecCCCCCHHHHHHHH----CCCceeccHHHH
Q 012866 382 VPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEA----AGAIIVSGVEMF 425 (454)
Q Consensus 382 ~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~----~G~~~~~Gl~ml 425 (454)
.+. ...++++.++.|+.-.+. ..++..++ .+.+++++..|.
T Consensus 79 -vl~~l~~~~~~~~ii~d~~svk~--~~~~~l~~~~~~~~~r~~~~hPm~ 125 (735)
T PRK14806 79 -VLADLKPLLSEHAIVTDVGSTKG--NVVDAARAVFGELPAGFVPGHPIA 125 (735)
T ss_pred -HHHHHHHhcCCCcEEEEcCCCch--HHHHHHHHhccccCCeEEecCCcC
Confidence 111 123456788999976532 22333333 245566666665
No 342
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.79 E-value=0.023 Score=56.72 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=41.8
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
..+|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~ 51 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG 51 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence 35789999996 799999999999999999999999999988877763
No 343
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.79 E-value=0.048 Score=57.37 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=54.5
Q ss_pred EEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866 306 FVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 383 (454)
Q Consensus 306 vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~ 383 (454)
+.++|.||+|.+ ++..|+++|++|+++++.... .+.|. ..+.....-.+. + .+.++|+||-+ .|.
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~-~~gi~~~~g~~~-~-~~~~~d~vV~s--pgi-------- 68 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLE-ALGIPIYIGHSA-E-NLDDADVVVVS--AAI-------- 68 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHH-HCcCEEeCCCCH-H-HCCCCCEEEEC--CCC--------
Confidence 789999999998 899999999999999976532 12221 111111000000 0 11234444321 111
Q ss_pred CChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866 384 VSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 425 (454)
Q Consensus 384 i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml 425 (454)
|...|.+++|+++|++++.-.+++
T Consensus 69 ------------------~~~~p~~~~a~~~~i~v~~~~el~ 92 (448)
T TIGR01082 69 ------------------KDDNPEIVEAKERGIPVIRRAEML 92 (448)
T ss_pred ------------------CCCCHHHHHHHHcCCceEeHHHHH
Confidence 335678899999999999988875
No 344
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.023 Score=54.79 Aligned_cols=47 Identities=43% Similarity=0.548 Sum_probs=39.8
Q ss_pred CCCCceEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-G-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-G-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++++++|+|+ | |.|++++..|++.|++|++.+|+.++.++..+++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 356899999997 6 8999999999999999999999988776665443
No 345
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.79 E-value=0.023 Score=53.89 Aligned_cols=74 Identities=14% Similarity=-0.023 Sum_probs=47.5
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
...+++++|||+|+|.+|..=+..|.+.|++|+|++.+.. ..++++..-...+.. .+.....+.++++||.||.
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~-r~~~~~dl~g~~LViaATd 94 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIK-GNYDKEFIKDKHLIVIATD 94 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChHHhCCCcEEEECCC
Confidence 3556789999999999988878899999999999998763 334444321111100 0111102356778887775
No 346
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.77 E-value=0.096 Score=54.67 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEE--------Ee---CCHHHHHH
Q 012866 273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI--------FD---IDFERAKS 341 (454)
Q Consensus 273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i--------~n---Rt~~~a~~ 341 (454)
-+.|...+++..+.+ .+.+++|++|+|-|.|.+|..++..|.+.|++|+. +| -+.++...
T Consensus 207 Tg~Gv~~~~~~~~~~---------~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~ 277 (445)
T PRK14030 207 TGFGALYFVHQMLET---------KGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDY 277 (445)
T ss_pred cHHHHHHHHHHHHHH---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHH
Confidence 567777777776652 23578999999999999999999999999998776 67 55555322
Q ss_pred HHH--------------Hh-cCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---ccc--CCcEEEEEecC
Q 012866 342 LAS--------------DV-MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVYT 401 (454)
Q Consensus 342 la~--------------~~-~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~--~~~~v~D~~y~ 401 (454)
|.+ .+ +...++-+++ ....+||+|-|.--+ .|..+ .+. ...+|+.-.-+
T Consensus 278 l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~---~~~~cDVliPcAl~n--------~I~~~na~~l~~~~ak~V~EgAN~ 346 (445)
T PRK14030 278 MLELRASGNDIVAPYAEKFPGSTFFAGKKP---WEQKVDIALPCATQN--------ELNGEDADKLIKNGVLCVAEVSNM 346 (445)
T ss_pred HHHHHHhcCccHHHHHhcCCCCEEcCCccc---eeccccEEeeccccc--------cCCHHHHHHHHHcCCeEEEeCCCC
Confidence 221 11 1111111222 123589988555322 23332 242 45788898888
Q ss_pred CCCCHHHHHHHHCCCceec
Q 012866 402 PRKTRLLKDAEAAGAIIVS 420 (454)
Q Consensus 402 P~~T~ll~~A~~~G~~~~~ 420 (454)
|....--+.-+++|+.+++
T Consensus 347 p~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 347 GCTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred CCCHHHHHHHHHCCCEEeC
Confidence 7533333444457765544
No 347
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.76 E-value=0.025 Score=54.15 Aligned_cols=46 Identities=33% Similarity=0.592 Sum_probs=41.0
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|.|+ |++|++++..|.+.|++|.++.|+.++.+++.+++
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI 51 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Confidence 56899999997 89999999999999999999999998877777665
No 348
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.76 E-value=0.026 Score=53.64 Aligned_cols=46 Identities=26% Similarity=0.532 Sum_probs=40.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|+|+ ||+|++++..|.+.|++|+++.|+.++.+++.+++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAEC 49 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46789999997 89999999999999999999999998877766554
No 349
>PRK06194 hypothetical protein; Provisional
Probab=95.73 E-value=0.026 Score=55.12 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=40.4
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++++||.|+ ||+|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL 50 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence 45789999996 79999999999999999999999988877776665
No 350
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.71 E-value=0.031 Score=56.61 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred CceEEEEccchhHHHHHHHHHHCC--Ce-EEEEeCCHHHHHHHHHHhcCC-ccccccccccCCCCccEEEECCCCCCCCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFERAKSLASDVMGA-ARPFEDILNFQPEKGAILANATPLGMHPN 378 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G--~~-v~i~nRt~~~a~~la~~~~~~-~~~~~~l~~~~~~~~divInat~~g~~p~ 378 (454)
..+|.|+|+ ++|+.-+.++.+.. ++ +-|++|+.++|++++++++.. +.+++++ +.+.|+++.++|....+.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eel----l~d~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEEL----PDDIDIACVVVRSAIVGG 77 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHH----hcCCCEEEEEeCCCCCCc
Confidence 358999999 78988888888754 64 789999999999999999864 2344443 233444444443210011
Q ss_pred CCCCCCChhcccCCc-EEEEEecCCC----CCHHHHHHHHCCCceecc
Q 012866 379 TDRVPVSEETLRDYQ-LVFDAVYTPR----KTRLLKDAEAAGAIIVSG 421 (454)
Q Consensus 379 ~~~~~i~~~~l~~~~-~v~D~~y~P~----~T~ll~~A~~~G~~~~~G 421 (454)
.. ..+....+..+. ++++ +|. -..+++.|+++|+...-+
T Consensus 78 ~H-~e~a~~aL~aGkHVL~E---KPla~~Ea~el~~~A~~~g~~l~v~ 121 (343)
T TIGR01761 78 QG-SALARALLARGIHVLQE---HPLHPRDIQDLLRLAERQGRRYLVN 121 (343)
T ss_pred cH-HHHHHHHHhCCCeEEEc---CCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 01 123334454443 2222 333 255677788888876543
No 351
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.70 E-value=0.025 Score=55.87 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccc-------cccccc-----cCCCCccEEE
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP-------FEDILN-----FQPEKGAILA 368 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~-------~~~l~~-----~~~~~~divI 368 (454)
.|.+|||+|||.+|......++..|+ +|.+++-.+.|. ++|++||..... .+++.+ ..-..+|..|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 47899999999999999999999999 999999998875 577779875321 111111 0113489999
Q ss_pred ECCCCCC
Q 012866 369 NATPLGM 375 (454)
Q Consensus 369 nat~~g~ 375 (454)
+||.+.+
T Consensus 248 dCsG~~~ 254 (354)
T KOG0024|consen 248 DCSGAEV 254 (354)
T ss_pred EccCchH
Confidence 9998754
No 352
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.69 E-value=0.085 Score=55.08 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEe
Q 012866 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD 333 (454)
Q Consensus 272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~n 333 (454)
--+.|...+++..+++ .+.+++|++|+|.|.|.+|..++..|.+.|++|+.++
T Consensus 206 aTg~Gv~~~~~~~~~~---------~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVS 258 (444)
T PRK14031 206 ATGYGNIYFLMEMLKT---------KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMS 258 (444)
T ss_pred ccHHHHHHHHHHHHHh---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 4577788888776652 2357999999999999999999999999999877633
No 353
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.028 Score=53.08 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=41.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
..+++++|+|+ |+.|++++..|.+.|++|++++|++++.+++.+.+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence 34789999996 789999999999999999999999998888877664
No 354
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.69 E-value=0.028 Score=55.97 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=51.3
Q ss_pred EEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCcc-----cc---ccccccCCCCccEEEECCCCCC
Q 012866 306 FVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAAR-----PF---EDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 306 vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~-----~~---~~l~~~~~~~~divInat~~g~ 375 (454)
+.|||+|++|.++++.|+..|. ++++++++.++++..+.++..... .+ .+.+ .+.++|+||.|....-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~--~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA--DAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH--HhCCCCEEEEcCCCCC
Confidence 4689999999999999999985 799999999999988877653211 11 1222 3578999999886543
No 355
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.031 Score=53.97 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=41.7
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++++++|+|+ ||+|++++..|.+.|++|.++.|+.++.+++.+.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999996 58999999999999999999999998888877665
No 356
>PRK06483 dihydromonapterin reductase; Provisional
Probab=95.67 E-value=0.028 Score=53.25 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=46.9
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEEEC
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILANA 370 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divIna 370 (454)
+|+++|.|+ ||+|++++..|++.|++|++.+|+.++..+..+..+... .++.+ +..+ .....|++||+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 81 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN 81 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence 478999996 699999999999999999999998765433333333221 12211 1110 12457999998
Q ss_pred CCC
Q 012866 371 TPL 373 (454)
Q Consensus 371 t~~ 373 (454)
...
T Consensus 82 ag~ 84 (236)
T PRK06483 82 ASD 84 (236)
T ss_pred Ccc
Confidence 754
No 357
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.028 Score=54.98 Aligned_cols=46 Identities=33% Similarity=0.452 Sum_probs=41.0
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|.|+ ||.|++++..|++.|++|.++.|+.++++++.+++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l 50 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL 50 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56899999995 69999999999999999999999998888877665
No 358
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.67 E-value=0.037 Score=57.99 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCc-----cccccccccCCCCccEEEECCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA-----RPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~-----~~~~~l~~~~~~~~divInat~~ 373 (454)
...++++|+|+|..|+.++..|.+.|.+|+++++++++.+++.+++. ... .+.+.+.+..+.++|.+|.+++-
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 45789999999999999999999999999999999999888877642 211 12223433346789999988763
No 359
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.03 Score=54.23 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=40.7
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|+|+ ||.|++++..|++.|++|++++|+.++.+++.+++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 367899999997 79999999999999999999999988877765554
No 360
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.028 Score=53.50 Aligned_cols=46 Identities=46% Similarity=0.600 Sum_probs=40.6
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|+|+ |+.|++++..|.+.|++|+++.|+.++.++..+.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAI 49 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH
Confidence 56889999996 79999999999999999999999998887776655
No 361
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.64 E-value=0.051 Score=57.02 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCC-ceEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 012866 301 LAG-RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF 336 (454)
Q Consensus 301 ~~~-k~vlViGaGG~arai~~~L~~~--G~~v~i~nRt~ 336 (454)
+.+ ++++|+|.|++|++++..|... |++|++++...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 345 7899999999999999999987 47899999754
No 362
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.032 Score=52.97 Aligned_cols=46 Identities=35% Similarity=0.403 Sum_probs=40.8
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|+|+ |++|++++..|.+.|++|++++|+.++++.+.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL 51 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 56899999996 79999999999999999999999999888776655
No 363
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.032 Score=53.80 Aligned_cols=46 Identities=35% Similarity=0.575 Sum_probs=40.7
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++..++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL 49 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45789999995 79999999999999999999999999888877664
No 364
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.63 E-value=0.033 Score=55.77 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=52.6
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------ccc-ccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPF-EDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~-~~l~~~~~~~~divInat~~ 373 (454)
.+|.|||+|.+|.++++.|...|. ++.+++++.++++..+.++.... +.. .+.+ ..+++|+||.|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG~ 81 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAGA 81 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCCC
Confidence 489999999999999999998886 79999999888877776664321 111 1222 25789999987655
Q ss_pred CCCC
Q 012866 374 GMHP 377 (454)
Q Consensus 374 g~~p 377 (454)
.-.|
T Consensus 82 ~~k~ 85 (312)
T cd05293 82 RQNE 85 (312)
T ss_pred CCCC
Confidence 3333
No 365
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.62 E-value=0.029 Score=53.45 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=41.5
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++++++|.|+ |++|.+++..|++.|++|++++|+.++++++.+++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 467899999996 68999999999999999999999998888876665
No 366
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.62 E-value=0.021 Score=54.26 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 334 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nR 334 (454)
+++.+|+|+|.||.|..++-+|++-|+ +|++++-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 567899999999999999999999998 8887764
No 367
>PLN02253 xanthoxin dehydrogenase
Probab=95.61 E-value=0.031 Score=54.44 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=42.1
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
.+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+..++++++++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 63 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG 63 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Confidence 467899999996 699999999999999999999999888888877663
No 368
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.032 Score=54.16 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=40.9
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+.+.+++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l 51 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEI 51 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 366899999996 79999999999999999999999988877766554
No 369
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.59 E-value=0.036 Score=61.42 Aligned_cols=48 Identities=35% Similarity=0.605 Sum_probs=42.2
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+.+|+++|.|+ ||+|++++..|.+.|++|.+++|+.++++.+.+++
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l 458 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEI 458 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 4567899999996 79999999999999999999999998888776654
No 370
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.59 E-value=0.0029 Score=54.11 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=60.5
Q ss_pred eEEEEc-cchhHHHHHHHHHHCCC-e-EEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCC
Q 012866 305 MFVLAG-AGGAGRALAFGAKSRGA-R-VVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 305 ~vlViG-aGG~arai~~~L~~~G~-~-v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
||.|+| +|-+|+.++..|.+.-. + +.++.|+.+..+.+...++. ....+++.......++|+|+.|+|.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 589999 78889999999998544 4 77788887566667666541 11222221111246789999999865322
Q ss_pred CCCCCCCChhcccCCcEEEEEecC
Q 012866 378 NTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
.+.+..+..+..|+|+...
T Consensus 81 -----~~~~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 81 -----ELAPKLLKAGIKVIDLSGD 99 (121)
T ss_dssp -----HHHHHHHHTTSEEEESSST
T ss_pred -----HHHHHHhhCCcEEEeCCHH
Confidence 1334456788899999764
No 371
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.025 Score=54.91 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=48.6
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEEECC
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILANAT 371 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divInat 371 (454)
|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+... +... .++.+ +.+. .....|+|||+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA-GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 57999996 7999999999999999999999998887766432 2211 12211 1110 124579999988
Q ss_pred CCC
Q 012866 372 PLG 374 (454)
Q Consensus 372 ~~g 374 (454)
..+
T Consensus 81 g~~ 83 (274)
T PRK05693 81 GYG 83 (274)
T ss_pred CCC
Confidence 643
No 372
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.032 Score=53.55 Aligned_cols=48 Identities=31% Similarity=0.459 Sum_probs=42.0
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
.+++++++|+|+ |+.|++++..|.+.|++|+++.|+.+..+++.+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~ 56 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP 56 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 367899999996 699999999999999999999999988888776654
No 373
>PRK08643 acetoin reductase; Validated
Probab=95.55 E-value=0.031 Score=53.49 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=39.4
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
+|+++|+|+ ||.|++++..|.+.|++|++++|+.++.+++..++.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 578999996 699999999999999999999999988888776653
No 374
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.034 Score=56.12 Aligned_cols=75 Identities=28% Similarity=0.392 Sum_probs=54.4
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCC
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPE 362 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~ 362 (454)
.+++++++|.|+ ||+|++++..|++.|++|++++|+.++.+++.+++. ... .++.+ +... ...
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 356889999996 799999999999999999999999998888776552 221 12221 1110 124
Q ss_pred CccEEEECCCCC
Q 012866 363 KGAILANATPLG 374 (454)
Q Consensus 363 ~~divInat~~g 374 (454)
..|++||+....
T Consensus 85 ~iD~lInnAg~~ 96 (334)
T PRK07109 85 PIDTWVNNAMVT 96 (334)
T ss_pred CCCEEEECCCcC
Confidence 679999988654
No 375
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.035 Score=52.67 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=39.5
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++|+++|+|+ |+.|++++..|.+.|.+|++++|+.++.+++.+.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3578999996 89999999999999999999999998887776654
No 376
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.50 E-value=0.069 Score=55.13 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=61.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC------------Ccccc---ccccccCCCCccEEEE
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG------------AARPF---EDILNFQPEKGAILAN 369 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~------------~~~~~---~~l~~~~~~~~divIn 369 (454)
+|.|+|+|-+|..++..++ .|++|+.++++.++.+++.+.... ....+ .+..+ ...++|++|-
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~-~~~~ad~vii 79 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE-AYRDADYVII 79 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh-hhcCCCEEEE
Confidence 5889999999999997776 489999999999999888652211 00011 01111 2467899999
Q ss_pred CCCCCCCCCCCC---CCCCh-----hcccCCcEEEEEecCCCCC
Q 012866 370 ATPLGMHPNTDR---VPVSE-----ETLRDYQLVFDAVYTPRKT 405 (454)
Q Consensus 370 at~~g~~p~~~~---~~i~~-----~~l~~~~~v~D~~y~P~~T 405 (454)
|+|-........ ..+.. ..++++.+|++.+--|..|
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF 123 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence 987542111000 00100 0145678888888776643
No 377
>PRK06482 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.051 Score=52.75 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=50.8
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEE
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILAN 369 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divIn 369 (454)
|++||+|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+..+... .++.+ +.+. .....|+||+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS 82 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67999995 799999999999999999999999988887766543221 22221 1110 1245799999
Q ss_pred CCCCC
Q 012866 370 ATPLG 374 (454)
Q Consensus 370 at~~g 374 (454)
+....
T Consensus 83 ~ag~~ 87 (276)
T PRK06482 83 NAGYG 87 (276)
T ss_pred CCCCC
Confidence 87654
No 378
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.50 E-value=0.049 Score=56.91 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=29.2
Q ss_pred eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+++|+|.||+|++++..|.+.|++|+++++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899999999999999999999999999754
No 379
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.033 Score=53.30 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=38.8
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 478999996 58999999999999999999999998888877655
No 380
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.50 E-value=0.033 Score=53.56 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+++|++||+|+ ||.|++++..|.+.|++|.++.|+ ++.+++.+.+
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~ 58 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLI 58 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH
Confidence 3477899999997 599999999999999999999998 5555554433
No 381
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.08 Score=55.44 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
+.+++++|+|.|+.|++++..|.+.|++|++++...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 357899999999999999999999999999999653
No 382
>PRK14851 hypothetical protein; Provisional
Probab=95.48 E-value=0.023 Score=62.65 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 335 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt 335 (454)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 457899999999999999999999999 99998854
No 383
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.48 E-value=0.029 Score=55.93 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=47.2
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---C--C--c--ccccc---ccccCCCCccEEEE
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---G--A--A--RPFED---ILNFQPEKGAILAN 369 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~--~--~--~~~~~---l~~~~~~~~divIn 369 (454)
+|++||.|+ |++|++++..|.+.|++|+++.|+.++.+....... . . . .++.+ +.+ ...+.|+||+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFEL-AIDGCETVFH 83 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHH-HHcCCCEEEE
Confidence 689999995 899999999999999999988888765544322211 0 1 1 12221 222 2346799999
Q ss_pred CCCC
Q 012866 370 ATPL 373 (454)
Q Consensus 370 at~~ 373 (454)
+...
T Consensus 84 ~A~~ 87 (325)
T PLN02989 84 TASP 87 (325)
T ss_pred eCCC
Confidence 8754
No 384
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.032 Score=54.49 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=37.5
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+|.++|.|+||.|++++..|. .|++|++++|+.++++++.+++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l 44 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTL 44 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999996 7999999999988887776655
No 385
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.46 E-value=0.019 Score=60.44 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc---cccccccccCCCCccEEEECCCCCCCCCCCCCCCC--h
Q 012866 314 AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA---RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--E 386 (454)
Q Consensus 314 ~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~---~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~--~ 386 (454)
||+.++..|.+.|++|+++|||+++.+++++..+. .. .+.+++.+ .++.+|+|+-+.|.|-. ++. .+. .
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~-~l~~~~~Ii~mv~~g~~--v~~-Vi~~l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVA-SLEKPRKILLMVKAGAP--VDA-VIEQLL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHh-hCCCCCEEEEECCCchH--HHH-HHHHHH
Confidence 68899999999999999999999999999875331 11 13333322 23457999988876521 111 111 1
Q ss_pred hcccCCcEEEEEec-CCCCCH-HHHHHHHCCCce
Q 012866 387 ETLRDYQLVFDAVY-TPRKTR-LLKDAEAAGAII 418 (454)
Q Consensus 387 ~~l~~~~~v~D~~y-~P~~T~-ll~~A~~~G~~~ 418 (454)
..+.++.+++|..- .|.+|. ..++++++|+.+
T Consensus 77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~f 110 (459)
T PRK09287 77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHF 110 (459)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeE
Confidence 23577899999974 455553 335555667643
No 386
>PRK08263 short chain dehydrogenase; Provisional
Probab=95.45 E-value=0.056 Score=52.55 Aligned_cols=72 Identities=26% Similarity=0.308 Sum_probs=51.4
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEE
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILA 368 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divI 368 (454)
+|+++|.|+ |++|++++..|.+.|++|++..|+.++.+++.+.++... .++.+ +... .....|.||
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 82 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV 82 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 578999995 799999999999999999999999988887776554321 12211 1110 124579999
Q ss_pred ECCCCC
Q 012866 369 NATPLG 374 (454)
Q Consensus 369 nat~~g 374 (454)
++....
T Consensus 83 ~~ag~~ 88 (275)
T PRK08263 83 NNAGYG 88 (275)
T ss_pred ECCCCc
Confidence 987653
No 387
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.44 E-value=0.042 Score=52.04 Aligned_cols=46 Identities=33% Similarity=0.499 Sum_probs=40.0
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|+|+ |+.|++++..|.+.|++|.+++|+.++.+++++++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~ 51 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEV 51 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45788999995 69999999999999999999999998877776655
No 388
>PRK08303 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.032 Score=55.55 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=33.3
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 336 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~ 336 (454)
.+++|.++|.|+ +|+|++++.+|++.|++|++++|+.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 367899999997 5999999999999999999999973
No 389
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.42 E-value=0.032 Score=54.87 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=34.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK 340 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~ 340 (454)
+++.|||+|-+|.+++..|+..|.+|+++++++++.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence 4799999999999999999999999999999998875
No 390
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.42 E-value=0.039 Score=52.45 Aligned_cols=45 Identities=31% Similarity=0.571 Sum_probs=39.5
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++...+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence 5789999996 79999999999999999999999998888776554
No 391
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.41 E-value=0.039 Score=55.45 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC--------ccc-cccccccCCCCccEEEECC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA--------ARP-FEDILNFQPEKGAILANAT 371 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~--------~~~-~~~l~~~~~~~~divInat 371 (454)
+.+++.|||+|.+|..+++.++..|. +|.+++++.++++..+-++... .+. ..+.+ .+.++|+||.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~--~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE--DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH--HhCCCCEEEECC
Confidence 45789999999999999999999895 9999999987765443322210 011 12333 357899999988
Q ss_pred CCCCCC
Q 012866 372 PLGMHP 377 (454)
Q Consensus 372 ~~g~~p 377 (454)
..+-.|
T Consensus 82 g~~~~~ 87 (319)
T PTZ00117 82 GVQRKE 87 (319)
T ss_pred CCCCCC
Confidence 554333
No 392
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.038 Score=51.91 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=38.9
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|+|+ |+.|++++..|.+.|++|.+++|+.++..+...++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV 51 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH
Confidence 56899999996 79999999999999999999999887766554443
No 393
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.037 Score=52.27 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=50.1
Q ss_pred eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc---CCCCccEEEECCCC
Q 012866 305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF---QPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~---l~~~---~~~~~divInat~~ 373 (454)
+++|.|+ ||+|++++..|.+.|++|++++|+.+++++++++++.... ++.+ +.+. .....|++||+...
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~ 79 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAP 79 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCc
Confidence 5899986 7999999999999999999999999998888776643321 2221 2110 11257999998653
No 394
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.036 Score=61.01 Aligned_cols=47 Identities=32% Similarity=0.569 Sum_probs=42.3
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|.|+ ||+|++++..|.+.|++|+++.|+.++++++++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 415 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI 415 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 567899999996 69999999999999999999999999988887665
No 395
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.059 Score=50.67 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=47.7
Q ss_pred ceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccccc---cc----cCCCCccEEEECCCC
Q 012866 304 RMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFEDI---LN----FQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~l---~~----~~~~~~divInat~~ 373 (454)
++++|+| +||.|++++..|++.|++|++++|+.++.+++.+.-+... +++.+. .+ ..-.+.|+||++...
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 5799999 4799999999999999999999999887665533211111 222221 11 011357999998755
Q ss_pred C
Q 012866 374 G 374 (454)
Q Consensus 374 g 374 (454)
.
T Consensus 82 ~ 82 (225)
T PRK08177 82 S 82 (225)
T ss_pred c
Confidence 3
No 396
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.38 E-value=0.05 Score=52.17 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=41.8
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
..+.+|+++|+|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l 55 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 3567899999996 69999999999999999999999998888776654
No 397
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.042 Score=52.29 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=38.6
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++|.|+ ||.|++++..|.+.|++|.+..|+.++.+++...+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 46 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL 46 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 578999995 79999999999999999999999999888776554
No 398
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.37 E-value=0.039 Score=53.16 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=38.4
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~ 346 (454)
.+++|+++|.|+ +|.|++++..|.+.|++|+++. |+.++++++++++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 53 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDL 53 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 467899999997 6999999999999999988775 5667776665544
No 399
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=95.35 E-value=0.03 Score=55.83 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866 299 SPLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 344 (454)
Q Consensus 299 ~~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~ 344 (454)
.+++||.+||.|+ .|+|++++..|++.|++|.+ .|+.++.++++.
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~ 52 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFET 52 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHH
Confidence 4588999999999 79999999999999999988 677666666553
No 400
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.039 Score=52.51 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=37.6
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~ 345 (454)
++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 57899995 7999999999999999999999999988887654
No 401
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.33 E-value=0.038 Score=55.18 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=52.6
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCccc----------cccccccCCCCccEEEECCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAARP----------FEDILNFQPEKGAILANATP 372 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~~~----------~~~l~~~~~~~~divInat~ 372 (454)
.++.|||+|.-|.|++..|++.|.+|.+|.|+++-.+++-..- +..+.+ ..|+.+ .+.++|+|+-++|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~-a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAE-ALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHH-HHhcCCEEEEECC
Confidence 4789999999999999999999999999999999988876541 222211 123433 4566899888887
Q ss_pred CC
Q 012866 373 LG 374 (454)
Q Consensus 373 ~g 374 (454)
..
T Consensus 81 s~ 82 (329)
T COG0240 81 SQ 82 (329)
T ss_pred hH
Confidence 64
No 402
>PRK12862 malic enzyme; Reviewed
Probab=95.32 E-value=0.15 Score=56.96 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=104.1
Q ss_pred CCCceEEecccCCHHHHHHhc--CCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccH-HH
Q 012866 200 NYNGIYVPMFVDDLKKFFSTY--SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC-EA 276 (454)
Q Consensus 200 gl~~~y~~~~~~~~~~~~~~l--~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~-~G 276 (454)
|+|..=+.++.+|.++|++.. ..++|.|+|.-==-...++..++++-+ ..|.-++.+ | .+|+-.-. .|
T Consensus 109 gi~~~~i~~~~~d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~~------~~~ip~f~D-D--~~GTa~v~la~ 179 (763)
T PRK12862 109 GIDVFDIELDESDPDKLVEIVAALEPTFGGINLEDIKAPECFYIERELRE------RMKIPVFHD-D--QHGTAIIVAAA 179 (763)
T ss_pred CCCccccccCCCCHHHHHHHHHHhCCCcceeeeecccCchHHHHHHHHHh------cCCCceEec-C--cccHHHHHHHH
Confidence 466322233334666666655 358899987532122223333433221 123334441 2 34433222 23
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC--------H--H-HHHHH
Q 012866 277 SITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID--------F--E-RAKSL 342 (454)
Q Consensus 277 ~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt--------~--~-~a~~l 342 (454)
++++++- .+.++++.++++.|||.+|-+++..|...|. +|++++|. . . .-+.+
T Consensus 180 l~~a~~~-------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~ 246 (763)
T PRK12862 180 LLNGLKL-------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARY 246 (763)
T ss_pred HHHHHHH-------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHH
Confidence 4444431 1356888999999999999999999999998 69999842 1 1 12234
Q ss_pred HHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecCCC--CCHHHHHHHHC--C
Q 012866 343 ASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYTPR--KTRLLKDAEAA--G 415 (454)
Q Consensus 343 a~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~P~--~T~ll~~A~~~--G 415 (454)
|+.. ...+|.+ .++.+|++|-++..| .+.++++ .+..++|=+. ||. -|| ++|.+. |
T Consensus 247 a~~~-----~~~~l~e-~~~~~~v~iG~s~~g--------~~~~~~v~~M~~~piifals-NP~~E~~p--~~a~~~~~~ 309 (763)
T PRK12862 247 AQKT-----DARTLAE-VIEGADVFLGLSAAG--------VLKPEMVKKMAPRPLIFALA-NPTPEILP--EEARAVRPD 309 (763)
T ss_pred hhhc-----ccCCHHH-HHcCCCEEEEcCCCC--------CCCHHHHHHhccCCEEEeCC-CCcccCCH--HHHHHhcCC
Confidence 4432 2234544 456689999777533 3566654 3578898887 444 365 555554 4
Q ss_pred CceeccH
Q 012866 416 AIIVSGV 422 (454)
Q Consensus 416 ~~~~~Gl 422 (454)
+.+..|.
T Consensus 310 ~i~atGr 316 (763)
T PRK12862 310 AIIATGR 316 (763)
T ss_pred EEEEECC
Confidence 5555554
No 403
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.31 E-value=0.034 Score=54.63 Aligned_cols=119 Identities=8% Similarity=-0.016 Sum_probs=70.4
Q ss_pred eEEEEccchhHHHHHHHHHHCC----CeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 379 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~-~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~ 379 (454)
++.|||+|.+|.+++..|.+.| .+|++++|+. ++++.+...++.... ..+..+ ...++|+||-|+|......
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e-~~~~aDvVilavpp~~~~~- 79 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL-ADNEAE-IFTKCDHSFICVPPLAVLP- 79 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE-eCCHHH-HHhhCCEEEEecCHHHHHH-
Confidence 5899999999999999999988 4799999864 556666555432111 122222 2456899999998543211
Q ss_pred CCCCCCh---hcccCCcEEEEEecCCCCCHHHHHHHHC-CC-ceeccHHHHHHHHHH
Q 012866 380 DRVPVSE---ETLRDYQLVFDAVYTPRKTRLLKDAEAA-GA-IIVSGVEMFLRQAIG 431 (454)
Q Consensus 380 ~~~~i~~---~~l~~~~~v~D~~y~P~~T~ll~~A~~~-G~-~~~~Gl~mlv~Qa~~ 431 (454)
+-. ..+.++..++.+.- -....-+++.... .+ ++++-....+.++.-
T Consensus 80 ----vl~~l~~~l~~~~~ivS~~a-Gi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t 131 (277)
T PRK06928 80 ----LLKDCAPVLTPDRHVVSIAA-GVSLDDLLEITPGLQVSRLIPSLTSAVGVGTS 131 (277)
T ss_pred ----HHHHHHhhcCCCCEEEEECC-CCCHHHHHHHcCCCCEEEEeCccHHHHhhhcE
Confidence 111 12445556666542 2233334443221 12 467777777776654
No 404
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.04 Score=52.96 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=39.5
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~ 347 (454)
|+++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++...++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 46 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG 46 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Confidence 57999996 799999999999999999999999999888877654
No 405
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.31 E-value=0.047 Score=52.41 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=41.1
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i 56 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL 56 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999995 79999999999999999999999998877776554
No 406
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.046 Score=52.39 Aligned_cols=44 Identities=36% Similarity=0.523 Sum_probs=39.6
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+|+++|+|+ |+.|++++..|.+.|++|++++|+.++++.+.+.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL 46 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 468999997 79999999999999999999999999988887765
No 407
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.26 E-value=0.05 Score=51.36 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=40.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++++|.|+ |+.|.+++..|.+.|++|++++|+.++++.+.+.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTL 49 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46789999997 68999999999999999999999999888775554
No 408
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.044 Score=52.69 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=39.0
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++++|.|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence 368999995 79999999999999999999999999888877765
No 409
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.24 E-value=0.055 Score=53.96 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~ 345 (454)
.+++|+|+|++|.-+++.|.+.|.+|+++.|..++.+++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~ 44 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA 44 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc
Confidence 369999999999999999999999999999988888777653
No 410
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.24 E-value=0.051 Score=51.85 Aligned_cols=45 Identities=33% Similarity=0.541 Sum_probs=39.9
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++++|.|+ |++|++++..|.+.|.+|.++.|+.++.+++..++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 5689999995 89999999999999999999999999888776655
No 411
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=95.23 E-value=0.091 Score=54.39 Aligned_cols=90 Identities=24% Similarity=0.283 Sum_probs=58.7
Q ss_pred EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-----------------chhHHHHHHHHHHCCCeEEE
Q 012866 269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI 331 (454)
Q Consensus 269 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-----------------GG~arai~~~L~~~G~~v~i 331 (454)
|---|..-++..+++.+. ..+++||+++|.|+ |.+|++++.+|..+|++|++
T Consensus 165 gr~~~~~~I~~~~~~~~~-----------~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~ 233 (399)
T PRK05579 165 GRMAEPEEIVAAAERALS-----------PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL 233 (399)
T ss_pred CCCCCHHHHHHHHHHHhh-----------hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence 445666667676665553 13478999999997 56999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCCcccccc---c----cccCCCCccEEEECCCCC
Q 012866 332 FDIDFERAKSLASDVMGAARPFED---I----LNFQPEKGAILANATPLG 374 (454)
Q Consensus 332 ~nRt~~~a~~la~~~~~~~~~~~~---l----~~~~~~~~divInat~~g 374 (454)
+.++.+ .+ ...+...+++.+ + .+ .....|++|++..++
T Consensus 234 v~~~~~-~~---~~~~~~~~dv~~~~~~~~~v~~-~~~~~DilI~~Aav~ 278 (399)
T PRK05579 234 VSGPVN-LP---TPAGVKRIDVESAQEMLDAVLA-ALPQADIFIMAAAVA 278 (399)
T ss_pred eCCCcc-cc---CCCCcEEEccCCHHHHHHHHHH-hcCCCCEEEEccccc
Confidence 998752 11 000111122221 1 11 235689999987654
No 412
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.22 E-value=0.095 Score=59.37 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=56.6
Q ss_pred ceEEEEccchhHHHH-HHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 304 RMFVLAGAGGAGRAL-AFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 304 k~vlViGaGG~arai-~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
++++|+|.||+|+++ |..|.++|++|++.+.+... .++|. ..+.... ...-.+ .+.++|+||-. .|
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~-~~gi~~~-~g~~~~-~~~~~d~vV~S--pg------- 72 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLK-AKGARFF-LGHQEE-HVPEDAVVVYS--SS------- 72 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHH-HCCCEEe-CCCCHH-HcCCCCEEEEC--CC-------
Confidence 469999999999999 88999999999999975422 22221 1111110 000000 11223333311 11
Q ss_pred CCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866 382 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 426 (454)
Q Consensus 382 ~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv 426 (454)
-|...|.+++|+++|++++.-.+++-
T Consensus 73 -------------------I~~~~p~~~~a~~~gi~v~~~~el~~ 98 (809)
T PRK14573 73 -------------------ISKDNVEYLSAKSRGNRLVHRAELLA 98 (809)
T ss_pred -------------------cCCCCHHHHHHHHCCCcEEeHHHHHH
Confidence 13356889999999999999999863
No 413
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.21 E-value=0.057 Score=54.70 Aligned_cols=73 Identities=16% Similarity=0.037 Sum_probs=51.7
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--C--c--ccccc---ccccCCCCccEEEE
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--A--A--RPFED---ILNFQPEKGAILAN 369 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~--~--~~~~~---l~~~~~~~~divIn 369 (454)
..+++++||+|+ |..|+.++..|.+.|.+|+++.|+.++++.+...+.. . . .++.+ +.+ .+.+.|.||+
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih 85 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDE-AVKGCDGVFH 85 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHH-HHcCCCEEEE
Confidence 346789999995 7899999999999999999999998877766554421 1 1 12211 222 2356899999
Q ss_pred CCCC
Q 012866 370 ATPL 373 (454)
Q Consensus 370 at~~ 373 (454)
+...
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 8754
No 414
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.21 E-value=0.13 Score=49.76 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=61.2
Q ss_pred CCCCCceEEEEccchhHHHHHHHHHHCCC-----------eEEEEeCCH----H-----HH-HHHHHHhcCCcccccccc
Q 012866 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-----------RVVIFDIDF----E-----RA-KSLASDVMGAARPFEDIL 357 (454)
Q Consensus 299 ~~~~~k~vlViGaGG~arai~~~L~~~G~-----------~v~i~nRt~----~-----~a-~~la~~~~~~~~~~~~l~ 357 (454)
.++++.+++++|||.+|-+++..|.+.+. +|++++|.- + .. +.++ +|-.......+|.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~-~~~~~~~~~~~L~ 99 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA-RFANPERESGDLE 99 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH-HHcCcccccCCHH
Confidence 56888999999999888888888776543 688888741 1 11 1222 1221111223444
Q ss_pred ccCCC--CccEEEECCCCCCCCCCCCCCCChhccc------CCcEEEEEecCCCC----CHHHHHHHHC
Q 012866 358 NFQPE--KGAILANATPLGMHPNTDRVPVSEETLR------DYQLVFDAVYTPRK----TRLLKDAEAA 414 (454)
Q Consensus 358 ~~~~~--~~divInat~~g~~p~~~~~~i~~~~l~------~~~~v~D~~y~P~~----T~ll~~A~~~ 414 (454)
+ .++ ++|++|-++..+ . .|.+++++ +..++|=++ ||.. || ++|.+.
T Consensus 100 e-av~~~kptvlIG~S~~~---g----~ft~evv~~Ma~~~~~PIIFaLS-NPt~~aE~tp--e~a~~~ 157 (254)
T cd00762 100 D-AVEAAKPDFLIGVSRVG---G----AFTPEVIRAXAEINERPVIFALS-NPTSKAECTA--EEAYTA 157 (254)
T ss_pred H-HHHhhCCCEEEEeCCCC---C----CCCHHHHHHHhhcCCCCEEEECC-CcCCccccCH--HHHHhh
Confidence 3 334 789999877632 1 25555432 567888886 5543 55 455544
No 415
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.21 E-value=0.023 Score=49.37 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=31.8
Q ss_pred CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERA 339 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a 339 (454)
+++|+|+|+|+.|..++..|+..|+ +++|++.+.=..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 5789999999999999999999999 999999875433
No 416
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.19 E-value=0.05 Score=54.36 Aligned_cols=71 Identities=25% Similarity=0.250 Sum_probs=52.1
Q ss_pred eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC-c--------cccccccccCCCCccEEEECCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA-A--------RPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~-~--------~~~~~l~~~~~~~~divInat~~ 373 (454)
|+.|||+|.+|.++++.|...|. ++.+++.+.++++..+.++... . +...+.+ ..+++|+||.|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~--~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYD--DCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHH--HhCCCCEEEECCCC
Confidence 47899999999999999998886 7999999988888777666431 1 0111222 35789999987765
Q ss_pred CCCC
Q 012866 374 GMHP 377 (454)
Q Consensus 374 g~~p 377 (454)
.-.|
T Consensus 79 ~~kp 82 (307)
T cd05290 79 SIDP 82 (307)
T ss_pred CCCC
Confidence 4444
No 417
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.045 Score=52.49 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=38.5
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~ 345 (454)
.++++++++|+|+ ||.|++++..|.+.|++|.+..|+.++. ++.++
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~ 49 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEE 49 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHH
Confidence 3577899999996 6999999999999999999999988765 44443
No 418
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.19 E-value=0.042 Score=48.39 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=45.4
Q ss_pred EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--------cccc-cccc--cCCCCccEEEECCCC
Q 012866 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RPFE-DILN--FQPEKGAILANATPL 373 (454)
Q Consensus 306 vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--------~~~~-~l~~--~~~~~~divInat~~ 373 (454)
++|+|+|.+|...++.|++.|.+|+++.|.. +++.+.++ +... .... .... .....+|+||.|+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 6899999999999999999999999999998 87776443 2110 0000 0100 023568999999864
No 419
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.18 E-value=0.047 Score=53.98 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=27.8
Q ss_pred eEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 334 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nR 334 (454)
+|+|+|+||.|..++..|+..|+ +|+|++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDM 31 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 58999999999999999999999 9998874
No 420
>PRK08017 oxidoreductase; Provisional
Probab=95.10 E-value=0.046 Score=52.19 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=36.0
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la 343 (454)
++++|+|+ |++|++++..|.+.|++|.++.|+.++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 57999998 89999999999999999999999998876654
No 421
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.056 Score=52.53 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=37.8
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~ 345 (454)
++.++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 46 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQ 46 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 578999996 7999999999999999999999999887777554
No 422
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=95.09 E-value=0.055 Score=54.03 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=40.3
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVM 347 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G-~~v~i~nRt~~~a~~la~~~~ 347 (454)
+|+++|.|+ +|+|++++..|.+.| ++|++++|+.++++++++++.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~ 49 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG 49 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence 678999997 599999999999999 799999999999888887764
No 423
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.015 Score=56.27 Aligned_cols=39 Identities=31% Similarity=0.332 Sum_probs=34.1
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKS 341 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~ 341 (454)
+++++|+|+ ||.|++++..|.+.|++|++..|+.++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~ 43 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP 43 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc
Confidence 578999995 799999999999999999999999776543
No 424
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.07 E-value=0.057 Score=51.20 Aligned_cols=46 Identities=39% Similarity=0.547 Sum_probs=39.2
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+.+++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++...+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV 50 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45789999995 79999999999999999999999987776665544
No 425
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.04 E-value=0.047 Score=52.35 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=29.5
Q ss_pred eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866 305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 336 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~ 336 (454)
+|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 999998764
No 426
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.03 E-value=0.055 Score=52.06 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=37.4
Q ss_pred eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+++|+|+ ||.|++++..|.+.|++|++.+|+.++.+++.+++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6899996 69999999999999999999999998887777665
No 427
>PRK07791 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.053 Score=53.28 Aligned_cols=46 Identities=41% Similarity=0.734 Sum_probs=38.9
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH---------HHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF---------ERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~---------~~a~~la~~~ 346 (454)
+++|+++|.|+ +|+|++++..|++.|++|+++.|+. ++++++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l 59 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEI 59 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHH
Confidence 56899999996 5999999999999999999988875 6677776665
No 428
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.02 E-value=0.074 Score=51.22 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=46.5
Q ss_pred CCceEEEEccchhHHHHHHHHHHCC-----------CeEEEEeCCH------------------HHHHHHHHHhcCC-cc
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRG-----------ARVVIFDIDF------------------ERAKSLASDVMGA-AR 351 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G-----------~~v~i~nRt~------------------~~a~~la~~~~~~-~~ 351 (454)
+..+|+|+|+||.|..++..|++.| .+|+|++.+. .|++.+++++... .+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 4678999999999999999999874 2888888542 3566666665421 11
Q ss_pred cccc----c--cccCCCCccEEEECC
Q 012866 352 PFED----I--LNFQPEKGAILANAT 371 (454)
Q Consensus 352 ~~~~----l--~~~~~~~~divInat 371 (454)
.++. + .. ...++|+||+|+
T Consensus 90 ~i~a~~~~~~~~~-~~~~~DiVi~av 114 (244)
T TIGR03736 90 DWTAHPERVERSS-TLHRPDIVIGCV 114 (244)
T ss_pred eEEEEEeeeCchh-hhcCCCEEEECC
Confidence 1211 1 11 235689999987
No 429
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.01 E-value=0.061 Score=50.86 Aligned_cols=46 Identities=43% Similarity=0.663 Sum_probs=39.6
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~ 346 (454)
+.+++++|+|+ |++|+.++..|.+.|++|++. .|+.++.+++...+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 50 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI 50 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 56789999996 899999999999999998888 99988877776654
No 430
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.98 E-value=0.046 Score=53.22 Aligned_cols=72 Identities=29% Similarity=0.469 Sum_probs=51.6
Q ss_pred EEEEcc-chhHHHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCCc-----cc---cccccccCCCCccEEEECCC
Q 012866 306 FVLAGA-GGAGRALAFGAKSRG----ARVVIFDIDFERAKSLASDVMGAA-----RP---FEDILNFQPEKGAILANATP 372 (454)
Q Consensus 306 vlViGa-GG~arai~~~L~~~G----~~v~i~nRt~~~a~~la~~~~~~~-----~~---~~~l~~~~~~~~divInat~ 372 (454)
+.|||+ |.+|..+++.|...| .+|++++++.++++..+.++.... .. ..++.+ ...++|+||.+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~-~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYE-AFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHH-HhCCCCEEEECCC
Confidence 468999 788999999999888 489999999988877766553211 01 122223 4678999999887
Q ss_pred CCCCCC
Q 012866 373 LGMHPN 378 (454)
Q Consensus 373 ~g~~p~ 378 (454)
.+-.|.
T Consensus 80 ~~~~~g 85 (263)
T cd00650 80 VGRKPG 85 (263)
T ss_pred CCCCcC
Confidence 655443
No 431
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.96 E-value=0.07 Score=53.03 Aligned_cols=48 Identities=35% Similarity=0.561 Sum_probs=39.5
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV 346 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~ 346 (454)
..+++|+++|+|+ ||.|++++..|.+.|++|++.+|. .++++++++++
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i 57 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEI 57 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHH
Confidence 5688999999997 599999999999999999888874 45666666554
No 432
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.062 Score=51.06 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=37.8
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDL 45 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 57999995 79999999999999999999999998887776554
No 433
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.065 Score=51.18 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=35.8
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++++|+++|+|+ ||.|++++..|.+.|++|++++|+.+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~ 52 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA 52 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 467899999996 7999999999999999999999997653
No 434
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.91 E-value=0.019 Score=59.62 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=51.8
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-----ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-----~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g 374 (454)
.+++|+|+|||.|-.|++-+..|...|++|+|.-|.. +++.+.|..-+. .+.++.+ .++.+|+|++.+|..
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF---~v~~~~E-a~~~ADvVviLlPDt 108 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF---KVGTYEE-LIPQADLVINLTPDK 108 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC---ccCCHHH-HHHhCCEEEEcCChH
Confidence 4679999999999999999999999999999877764 233333333233 2234444 457899999999864
No 435
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=94.90 E-value=0.066 Score=51.38 Aligned_cols=46 Identities=37% Similarity=0.615 Sum_probs=37.5
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.. .+++.+++
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~ 51 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAEL 51 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHH
Confidence 367899999996 69999999999999999999999853 34454443
No 436
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.85 E-value=0.034 Score=54.33 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=59.3
Q ss_pred eEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSR-GARV-VIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 382 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~ 382 (454)
++.|+|+|.+|+.++..+.+. +.++ .++.|. ...+...+.++.....+.+++++ ..+.|+||.|||.... .
T Consensus 3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~-----~ 75 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-HSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAAL-----K 75 (265)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-CCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHH-----H
Confidence 689999999999999999876 4454 344443 22223333332211122333332 2468999999985422 1
Q ss_pred CCChhcccCCcEEEEEec----CCC-CCHHHHHHHHCCCc
Q 012866 383 PVSEETLRDYQLVFDAVY----TPR-KTRLLKDAEAAGAI 417 (454)
Q Consensus 383 ~i~~~~l~~~~~v~D~~y----~P~-~T~ll~~A~~~G~~ 417 (454)
.+-...|..+.-|+-..- .+. ...+.+.|++.|.+
T Consensus 76 e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 76 EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 133345665544443321 121 24467778888876
No 437
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.84 E-value=0.052 Score=55.06 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=49.7
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCcc--------c---cccccccCCCCccEEEECC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAAR--------P---FEDILNFQPEKGAILANAT 371 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~~--------~---~~~l~~~~~~~~divInat 371 (454)
.++.|+|+|.+|.+++..|++.| +++++.|+++..+++.+.- +.... . ..++.+ .+..+|+||-|+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a~~~aDlVilav 85 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-AANCADVVVMGV 85 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-HHhcCCEEEEEe
Confidence 57999999999999999999988 7889999999988886531 11100 0 112222 346789999999
Q ss_pred CCC
Q 012866 372 PLG 374 (454)
Q Consensus 372 ~~g 374 (454)
|..
T Consensus 86 ps~ 88 (341)
T PRK12439 86 PSH 88 (341)
T ss_pred CHH
Confidence 853
No 438
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.84 E-value=0.083 Score=55.44 Aligned_cols=74 Identities=28% Similarity=0.355 Sum_probs=51.2
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHhcCCcc--cccc---cccc------CCCCcc
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID--FERAKSLASDVMGAAR--PFED---ILNF------QPEKGA 365 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt--~~~a~~la~~~~~~~~--~~~~---l~~~------~~~~~d 365 (454)
.+++++++|+|+ ||+|++++..|.+.|++|++++|. .++.++++++++...+ ++.+ +..+ .....|
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 457899999997 899999999999999999998884 4556666666553322 2211 1110 123579
Q ss_pred EEEECCCC
Q 012866 366 ILANATPL 373 (454)
Q Consensus 366 ivInat~~ 373 (454)
+||++...
T Consensus 287 ~vi~~AG~ 294 (450)
T PRK08261 287 IVVHNAGI 294 (450)
T ss_pred EEEECCCc
Confidence 99998754
No 439
>PRK05599 hypothetical protein; Provisional
Probab=94.84 E-value=0.063 Score=51.39 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=36.8
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|.|+ +|.|++++..|. .|.+|+++.|+.++++++++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l 43 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDL 43 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 35899997 599999999998 5999999999999999887766
No 440
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.83 E-value=0.053 Score=54.13 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=47.5
Q ss_pred eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--ccc---cccccCCCCccEEEECCC
Q 012866 305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFE---DILNFQPEKGAILANATP 372 (454)
Q Consensus 305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~---~l~~~~~~~~divInat~ 372 (454)
+++|+|+ |-.|+.++.+|.+.|.+|.++.|+.+++..+.. .+.+.+ ++. .+.. .+.++|.||++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~-al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPP-SFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHH-HHCCCCEEEECCC
Confidence 6899995 889999999999999999999999877654432 222221 222 2333 3567899999865
No 441
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.81 E-value=0.095 Score=51.71 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=35.4
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSL 342 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~l 342 (454)
+.+.+|+|+|+||.|..++..|+..|+ +|+|++.+.-....|
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL 59 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL 59 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc
Confidence 456899999999999999999999999 999999765443333
No 442
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.80 E-value=0.049 Score=53.40 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 012866 300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM 375 (454)
Q Consensus 300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~ 375 (454)
.+++|+|.|||.|.=|+|=+..|.+.|.+|.|-.|....+-+.|++-|..+.++++ +.+.+|+|++-+|--.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~e----a~k~ADvim~L~PDe~ 86 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEE----AAKRADVVMILLPDEQ 86 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHH----HhhcCCEEEEeCchhh
Confidence 57899999999999999999999999999999999888877777776655545444 3467899999888543
No 443
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.79 E-value=0.074 Score=50.99 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=38.1
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+|+++|+|+ |+.|++++..|++.|++|.+++|+.++.+++++.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 46 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI 46 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 478999997 58999999999999999999999988877776554
No 444
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.79 E-value=0.083 Score=50.61 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=46.9
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEE
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAIL 367 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~div 367 (454)
+++|+++|+|+ ||.|++++..|.+.|++|.+..| +.+.++++... +... .++.+ +..+ .....|+|
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK-GVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 56899999996 79999999999999998877655 44455555432 2211 12211 1110 12457999
Q ss_pred EECCCC
Q 012866 368 ANATPL 373 (454)
Q Consensus 368 Inat~~ 373 (454)
|++...
T Consensus 84 i~~ag~ 89 (255)
T PRK06463 84 VNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998765
No 445
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.074 Score=50.58 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=37.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~ 346 (454)
+++++++|+|+ ||.|++++..|.+.|++|+++.|+. ++.+.++.++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l 51 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEI 51 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHH
Confidence 46789999996 8999999999999999999999975 3455555443
No 446
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.77 E-value=0.065 Score=53.40 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=34.8
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
.+++++|.|+ |.+|+.++..|.+.|.+|++..|+.++++.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 45 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKT 45 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHH
Confidence 4789999995 8999999999999999999888887655443
No 447
>PRK06114 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.089 Score=50.42 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=38.3
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~ 346 (454)
++++|+++|.|+ ||.|++++..|.+.|++|.+..|+.+ ..+++++++
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l 53 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI 53 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 467899999996 59999999999999999999998754 445555544
No 448
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.078 Score=50.95 Aligned_cols=43 Identities=35% Similarity=0.542 Sum_probs=37.9
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|+|+ |+.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL 45 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 57999997 79999999999999999999999988887776654
No 449
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.71 E-value=0.087 Score=52.47 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=50.9
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC------c--cc-cccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA------A--RP-FEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~------~--~~-~~~l~~~~~~~~divInat~~ 373 (454)
+++.|||+|-+|..+++.++..|. +|++++++.++++..+.++... . +. ..+.+ ...++|+||.|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~--~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE--DIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH--HHCCCCEEEECCCC
Confidence 479999999999999999998876 9999999988776655433211 0 11 11222 35789999998765
Q ss_pred CCCC
Q 012866 374 GMHP 377 (454)
Q Consensus 374 g~~p 377 (454)
...|
T Consensus 81 p~~~ 84 (307)
T PRK06223 81 PRKP 84 (307)
T ss_pred CCCc
Confidence 4444
No 450
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.68 E-value=0.077 Score=53.52 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=56.4
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc---------------cccccccCCCCccEEE
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP---------------FEDILNFQPEKGAILA 368 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~---------------~~~l~~~~~~~~divI 368 (454)
.++.|||+|.+|.+++..|.+.|.+|++++|+.. .+.+.+ .+....+ ..+. + ....+|+||
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-A-ALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccCh-h-hccCCCEEE
Confidence 3699999999999999999999999999999753 344433 2211100 0111 2 245789999
Q ss_pred ECCCCCCCCCCCCCCCC--hhcccCCcEEEEEecCC
Q 012866 369 NATPLGMHPNTDRVPVS--EETLRDYQLVFDAVYTP 402 (454)
Q Consensus 369 nat~~g~~p~~~~~~i~--~~~l~~~~~v~D~~y~P 402 (454)
-|++..... . .+. ...+.++.+++++....
T Consensus 79 l~vk~~~~~---~-~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 79 VTVKSAATA---D-AAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEecCcchH---H-HHHHHHhhCCCCCEEEEeCCCC
Confidence 988753211 0 011 11245667777775443
No 451
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.079 Score=50.77 Aligned_cols=46 Identities=30% Similarity=0.515 Sum_probs=39.4
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~-v~i~nRt~~~a~~la~~~ 346 (454)
+++|+++|+|+ |+.|+.++..|.+.|++ |++++|+.++.+.+.+.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l 51 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL 51 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH
Confidence 56889999996 69999999999999996 999999988777665544
No 452
>PLN02602 lactate dehydrogenase
Probab=94.67 E-value=0.1 Score=53.12 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=52.9
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-----ccc---ccccccCCCCccEEEECCCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-----RPF---EDILNFQPEKGAILANATPL 373 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-----~~~---~~l~~~~~~~~divInat~~ 373 (454)
+++.|||+|.+|.++++.|...|. ++.+++++.++++..+.++.... ..+ .+.+ ..+++|+||-|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~--~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA--VTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH--HhCCCCEEEECCCC
Confidence 699999999999999999998886 79999999988887776664311 111 1222 25789999987765
Q ss_pred CCCC
Q 012866 374 GMHP 377 (454)
Q Consensus 374 g~~p 377 (454)
.-.|
T Consensus 116 ~~k~ 119 (350)
T PLN02602 116 RQIP 119 (350)
T ss_pred CCCc
Confidence 4333
No 453
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.66 E-value=0.12 Score=50.47 Aligned_cols=92 Identities=25% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc----cccc-CCCCccEEEECCCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED----ILNF-QPEKGAILANATPLG 374 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~----l~~~-~~~~~divInat~~g 374 (454)
.+++|+|+|+|++|..++..++.+|+ +|++++++.+|. +++++++... ++.++ +.+. ....+|++++++...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 57899999999999999998899999 588888888775 5677777532 22211 1110 123589999988532
Q ss_pred CCCCCCCCCCChhcccCCcEEEEEe
Q 012866 375 MHPNTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 375 ~~p~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
. ......+.++++..++.+-
T Consensus 199 ~-----~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 A-----AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred H-----HHHHHHHHhcCCCEEEEec
Confidence 1 0011124566666666655
No 454
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.66 E-value=0.14 Score=51.41 Aligned_cols=69 Identities=26% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLG 374 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g 374 (454)
.+.+++|.|+|++|.+++..++..|++|+.+.++.++ .++++++|... +...+. .....|+++.+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~-~~~a~~~Ga~~vi~~~~~---~~~~~d~~i~~~~~~ 234 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAA-RRLALALGAASAGGAYDT---PPEPLDAAILFAPAG 234 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHhCCceecccccc---CcccceEEEECCCcH
Confidence 4789999999999999888888899998889999888 46778888643 221211 113468888777653
No 455
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.64 E-value=0.073 Score=53.19 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=32.0
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 337 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~ 337 (454)
..+++|+|+|.+|..++..|++.|.+|+++.|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 35799999999999999999999999999999864
No 456
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.64 E-value=0.034 Score=56.48 Aligned_cols=91 Identities=16% Similarity=0.056 Sum_probs=55.5
Q ss_pred ceEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcC-C---ccccccccccCCCCccEEEECCCCCCCC
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMG-A---ARPFEDILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~-~---~~~~~~l~~~~~~~~divInat~~g~~p 377 (454)
.++.|+|| |.+|+.++..|.+. +++++.+.++.++.+.+++.++. . ...++++.+....+.|+|+.|||-+...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 57999997 78899999999877 45765544444455555554431 1 1123333321235689999999875432
Q ss_pred CCCCCCCChhcccCCcEEEEEe
Q 012866 378 NTDRVPVSEETLRDYQLVFDAV 399 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~ 399 (454)
.+-...++.+..|+|+.
T Consensus 83 -----~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 83 -----DLAPQLLEAGVKVIDLS 99 (343)
T ss_pred -----HHHHHHHhCCCEEEECC
Confidence 12233445567777775
No 457
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.60 E-value=0.082 Score=50.33 Aligned_cols=44 Identities=32% Similarity=0.465 Sum_probs=38.6
Q ss_pred CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
+|++||.|+ |+.|++++..|.+.|.+|+++.|+.++.+++.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~ 45 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA 45 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 367999995 79999999999999999999999998888877654
No 458
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.59 E-value=0.066 Score=56.51 Aligned_cols=74 Identities=19% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
..+++|++|||+|+|.+|..=+..|.+.|++|+|++.... ..+++++.-...+.. .+...-.+.++++||.||.
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~-~~~~~~dl~~~~lv~~at~ 81 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVE-GPFDESLLDTCWLAIAATD 81 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChHHhCCCEEEEECCC
Confidence 3568899999999999988878899999999999987653 334444321111100 0111102456778887774
No 459
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.58 E-value=0.069 Score=54.58 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=48.4
Q ss_pred CceEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-----HHHHHHHHh-cCCcc---c-------ccccccc
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFE-----RAKSLASDV-MGAAR---P-------FEDILNF 359 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G-------~~v~i~nRt~~-----~a~~la~~~-~~~~~---~-------~~~l~~~ 359 (454)
..++.|||+|..|.|++..|.+.| .+|.+|.|+.+ .++.+-+.- +..+. . ..++.+
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e- 89 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE- 89 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH-
Confidence 468999999999999999999887 58999999976 234333221 11111 1 123333
Q ss_pred CCCCccEEEECCCCC
Q 012866 360 QPEKGAILANATPLG 374 (454)
Q Consensus 360 ~~~~~divInat~~g 374 (454)
.++++|+||-++|..
T Consensus 90 av~~aDiIvlAVPsq 104 (365)
T PTZ00345 90 AVEDADLLIFVIPHQ 104 (365)
T ss_pred HHhcCCEEEEEcChH
Confidence 356789999988864
No 460
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.076 Score=51.15 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=37.4
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHH-HHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFER-AKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G-~~v~i~nRt~~~-a~~la~~~ 346 (454)
.+++++|.|+ ||+|++++..|.+.| ++|+++.|+.++ .+++++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l 54 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQM 54 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHH
Confidence 3578999996 699999999999986 699999999876 66666554
No 461
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.069 Score=51.22 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=35.1
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
.+++|+++|.|+ ||.|++++..|++.|++|+++.|+.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~ 45 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD 45 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence 577899999996 799999999999999999999998654
No 462
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.18 Score=52.51 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=32.3
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
.++++|+|-|++|++++..|.++|.+|+.++++.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~ 38 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEA 38 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 367999999999999999999999999999987654
No 463
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.49 E-value=0.1 Score=53.17 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=51.3
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccc---ccccccCCCCccEEEECCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPF---EDILNFQPEKGAILANATP 372 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~---~~l~~~~~~~~divInat~ 372 (454)
.+++|+|.|+|+.|.+++..++.+|++|+++.++.++...++++++... +.. +++.+ ....+|++|+++.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~-~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA-AIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh-hcCCCCEEEECCC
Confidence 4789999999999999999999999988888777777666777777532 111 12222 1235799999886
No 464
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.46 E-value=0.075 Score=53.87 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=46.7
Q ss_pred eEEEEccchhHHHHHHHHHHCC--------CeEEEEeC-----CHHHHHHHHHHhc-CCc---cc-------cccccccC
Q 012866 305 MFVLAGAGGAGRALAFGAKSRG--------ARVVIFDI-----DFERAKSLASDVM-GAA---RP-------FEDILNFQ 360 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~G--------~~v~i~nR-----t~~~a~~la~~~~-~~~---~~-------~~~l~~~~ 360 (454)
++.|||+|..|.|++..|++.| .+|++|.| +.+-.+.+-+... ..+ +. ..++.+ .
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e-a 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE-A 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH-H
Confidence 4789999999999999999988 79999999 4444444433221 111 11 123333 3
Q ss_pred CCCccEEEECCCCC
Q 012866 361 PEKGAILANATPLG 374 (454)
Q Consensus 361 ~~~~divInat~~g 374 (454)
+.++|+||-++|..
T Consensus 80 l~~ADiIIlAVPs~ 93 (342)
T TIGR03376 80 AKGADILVFVIPHQ 93 (342)
T ss_pred HhcCCEEEEECChH
Confidence 56789999999864
No 465
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.44 E-value=0.05 Score=55.02 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSL 342 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~l 342 (454)
+++++||.|+ |+.|++++..|.+.|.+|++++|+.......
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 44 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNL 44 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhH
Confidence 4789999996 7899999999999999999999987654443
No 466
>PLN02214 cinnamoyl-CoA reductase
Probab=94.43 E-value=0.086 Score=53.31 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=34.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
+++++++|.|+ |..|+.++..|.+.|.+|+.+.|+.++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 56789999997 899999999999999999999998765
No 467
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.39 E-value=0.1 Score=49.09 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=72.3
Q ss_pred eEEEEccchhHHHHHHHHHHC--CC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866 305 MFVLAGAGGAGRALAFGAKSR--GA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 381 (454)
Q Consensus 305 ~vlViGaGG~arai~~~L~~~--G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~ 381 (454)
++.++|.|.+|..++..+.+- ++ -+.+++|+.++++++.+.++.... .++++ .....|++|-|.+..-.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~--s~ide-~~~~~DlvVEaAS~~Av----- 73 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV--SDIDE-LIAEVDLVVEAASPEAV----- 73 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc--ccHHH-HhhccceeeeeCCHHHH-----
Confidence 578999999999998876643 35 689999999999999988876443 34444 33678999998874211
Q ss_pred CCCChhcccCCcEEEEEecC----CC-CCHHHHHHHHCCCc------eeccHHHHH
Q 012866 382 VPVSEETLRDYQLVFDAVYT----PR-KTRLLKDAEAAGAI------IVSGVEMFL 426 (454)
Q Consensus 382 ~~i~~~~l~~~~~v~D~~y~----P~-~T~ll~~A~~~G~~------~~~Gl~mlv 426 (454)
..+.+..|..+.-++=++-. |. ...+...|+..|++ .+.|++.|-
T Consensus 74 ~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~ 129 (255)
T COG1712 74 REYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDALA 129 (255)
T ss_pred HHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHHH
Confidence 01222334443322223222 22 23455567777765 467888664
No 468
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.37 E-value=0.098 Score=49.74 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=37.5
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i-~nRt~~~a~~la~~~ 346 (454)
.+++++|.|+ ||+|++++..|.+.|++|.+ ..|+.++.+++++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 49 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI 49 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4689999996 69999999999999997665 688888887776655
No 469
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.35 E-value=0.1 Score=58.25 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=34.7
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 341 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~ 341 (454)
++|.|||+|-||+.|+..++..|++|++++++.+..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~ 351 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDL 351 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 68999999999999999999999999999999886543
No 470
>PRK08264 short chain dehydrogenase; Validated
Probab=94.35 E-value=0.079 Score=50.03 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=36.4
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFERAKS 341 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt~~~a~~ 341 (454)
+.+++++|+|+ |+.|++++..|.+.|+ +|+++.|+.+++++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 45789999995 8999999999999999 99999999887654
No 471
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.34 E-value=0.11 Score=49.64 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=37.6
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
|+++|+|+ |+.|++++..|.+.|++|+++.|+.++++++..++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l 44 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI 44 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899995 79999999999999999999999988887776654
No 472
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.33 E-value=0.087 Score=52.26 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=32.5
Q ss_pred CceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866 303 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERA 339 (454)
Q Consensus 303 ~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a 339 (454)
++++||.| +|..|+.++..|.+.|.+|.++.|+.++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDP 41 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCch
Confidence 68999999 48999999999999999999888876543
No 473
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.33 E-value=0.058 Score=56.36 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=48.5
Q ss_pred eEEEEccchhHHHHHH--HHH---H-CCCeEEEEeCCHHHHHHHHHHhcC----C--ccc---cccccccCCCCccEEEE
Q 012866 305 MFVLAGAGGAGRALAF--GAK---S-RGARVVIFDIDFERAKSLASDVMG----A--ARP---FEDILNFQPEKGAILAN 369 (454)
Q Consensus 305 ~vlViGaGG~arai~~--~L~---~-~G~~v~i~nRt~~~a~~la~~~~~----~--~~~---~~~l~~~~~~~~divIn 369 (454)
++.|||+|.+|.+.+. .+. . .|.+|.++++++++++........ . ... ..++.+ .+.++|+||+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e-al~~AD~Vi~ 80 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRRE-ALDGADFVIN 80 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH-HhcCCCEEEE
Confidence 5899999987776544 454 2 345899999999998877554321 0 011 123333 4678999999
Q ss_pred CCCCCCCCC
Q 012866 370 ATPLGMHPN 378 (454)
Q Consensus 370 at~~g~~p~ 378 (454)
+.++|-.+.
T Consensus 81 ai~~~~~~~ 89 (423)
T cd05297 81 TIQVGGHEY 89 (423)
T ss_pred eeEecCccc
Confidence 999765443
No 474
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.32 E-value=0.13 Score=49.56 Aligned_cols=47 Identities=34% Similarity=0.487 Sum_probs=37.5
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV 346 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~ 346 (454)
.+++|+++|+|+ ||.|++++..|.+.|++|++..|+ .+.++.+.+++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l 52 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEI 52 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 467899999996 589999999999999988888884 44555555544
No 475
>PRK12747 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.11 Score=49.58 Aligned_cols=45 Identities=31% Similarity=0.411 Sum_probs=36.6
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV 346 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~ 346 (454)
++|+++|.|+ ||.|++++..|++.|++|.+.. |+.++.++++.++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 49 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI 49 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence 4789999996 6999999999999999988864 6667766665554
No 476
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.29 E-value=0.96 Score=45.70 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=100.8
Q ss_pred ccCHHHHHHHHHhcCCCceEEeccc------CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEE
Q 012866 186 SKGPILHNPTFRHVNYNGIYVPMFV------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTII 259 (454)
Q Consensus 186 S~SP~~hn~~f~~~gl~~~y~~~~~------~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~ 259 (454)
+|+-.=|..+...||.+..|..... |.+++..+.|... +.++-+=-|-...+..+. +... | -|+
T Consensus 57 TRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y-~D~iviR~~~~~~~~~~a-------~~~~-v-PVI 126 (334)
T PRK12562 57 TRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGHGQEVVETLA-------EYAG-V-PVW 126 (334)
T ss_pred chhHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHh-CCEEEEECCchHHHHHHH-------HhCC-C-CEE
Confidence 4566668899999999988875432 5788888877554 777777765444333232 2221 1 133
Q ss_pred EeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc--hhHHHHHHHHHHCCCeEEEEeCCH-
Q 012866 260 RRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG--GAGRALAFGAKSRGARVVIFDIDF- 336 (454)
Q Consensus 260 ~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG--G~arai~~~L~~~G~~v~i~nRt~- 336 (454)
+- +.-..+=|-...=+..|++..+ +..++|.++.++|-+ .++++.+..++..|++|+++....
T Consensus 127 Na---~~~~~HPtQaLaDl~Ti~e~~g-----------~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~ 192 (334)
T PRK12562 127 NG---LTNEFHPTQLLADLLTMQEHLP-----------GKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC 192 (334)
T ss_pred EC---CCCCCChHHHHHHHHHHHHHhC-----------CCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCccc
Confidence 32 1112444554443444433221 124788999999975 789999999999999999988542
Q ss_pred -------HHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866 337 -------ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 373 (454)
Q Consensus 337 -------~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~ 373 (454)
++++++++..+....-.+++.+ .++++|+|...+=.
T Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~~~~d~~~-a~~~aDvvyt~~w~ 235 (334)
T PRK12562 193 WPEASLVAECSALAQKHGGKITLTEDIAA-GVKGADFIYTDVWV 235 (334)
T ss_pred CCcHHHHHHHHHHHHHcCCeEEEEcCHHH-HhCCCCEEEEcCcc
Confidence 3444555555544323345555 56789999876533
No 477
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.29 E-value=0.1 Score=49.64 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=38.4
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDVM 347 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~~ 347 (454)
+++|+++|+|+ ||+|++++..|.+.|++|.+. .|+.++++.+..+++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~ 51 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG 51 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence 45789999995 699999999999999987765 567777777777664
No 478
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=94.25 E-value=0.12 Score=51.36 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=33.0
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK 340 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~ 340 (454)
-++|.|||||-||+.||+.++..|+.|++++++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~ 40 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALE 40 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHH
Confidence 36899999999999999999996689999999966543
No 479
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.24 E-value=0.095 Score=56.77 Aligned_cols=68 Identities=19% Similarity=0.116 Sum_probs=52.7
Q ss_pred ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~ 372 (454)
.+++|+|.|..|+.++..|.+.|.+++++++++++.+++.+ .+... .+.+.+++..++++|.++-+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 57899999999999999999999999999999999888864 44332 1222233335678998887776
No 480
>PRK05086 malate dehydrogenase; Provisional
Probab=94.20 E-value=0.085 Score=52.82 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=45.9
Q ss_pred ceEEEEcc-chhHHHHHHHHHH-CCC--eEEEEeCCHHHHHHHHHHhcC-C---ccc---cccccccCCCCccEEEECCC
Q 012866 304 RMFVLAGA-GGAGRALAFGAKS-RGA--RVVIFDIDFERAKSLASDVMG-A---ARP---FEDILNFQPEKGAILANATP 372 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~-~G~--~v~i~nRt~~~a~~la~~~~~-~---~~~---~~~l~~~~~~~~divInat~ 372 (454)
++++|+|| |++|+++++.|.. .+. ++++++|+. .++..+-++.. . .+. -+++.+ .+.++|+||+|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~-~~~g~alDl~~~~~~~~i~~~~~~d~~~-~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDPTP-ALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCC-CCcceehhhhcCCCCceEEEeCCCCHHH-HcCCCCEEEEcCC
Confidence 37899999 9999999999865 443 789999874 34332222221 1 111 123323 4577999999986
Q ss_pred CCCCC
Q 012866 373 LGMHP 377 (454)
Q Consensus 373 ~g~~p 377 (454)
....|
T Consensus 79 ~~~~~ 83 (312)
T PRK05086 79 VARKP 83 (312)
T ss_pred CCCCC
Confidence 64444
No 481
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=94.20 E-value=0.21 Score=49.40 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~ 372 (454)
.+.+++|.|+|++|.+++..++.+|++|+++.++.++.+.+. .++... ....+.. ....+|++++++.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~~d~vid~~g 223 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAES--EGGGFDVVVEATG 223 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCccccc--cCCCCCEEEECCC
Confidence 468899999999999999999999999988988888865554 476543 1222211 2245899999874
No 482
>PRK05650 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.11 Score=50.22 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=37.6
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|+|+ ||+|++++..|.+.|.+|+++.|+.++++++..++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 44 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLL 44 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 36899996 79999999999999999999999999888776654
No 483
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.12 Score=50.20 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=37.2
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
++++|+|+ ||.|++++..|++.|++|++++|+.++.+++.+++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~ 44 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA 44 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899996 69999999999999999999999988877776554
No 484
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.17 E-value=0.19 Score=47.85 Aligned_cols=95 Identities=20% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccc--c----ccCCCCccEEEECCCC
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDI--L----NFQPEKGAILANATPL 373 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l--~----~~~~~~~divInat~~ 373 (454)
..+++++|.|+|++|++++..++..|.+|+++.++.++.+.+ +.++... ++..+. . ......+|+++++++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 357899999999999999998889999999999998876655 4454321 111110 0 0012468999998763
Q ss_pred CCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866 374 GMHPNTDRVPVSEETLRDYQLVFDAVYT 401 (454)
Q Consensus 374 g~~p~~~~~~i~~~~l~~~~~v~D~~y~ 401 (454)
... ..-..+.+.+...++++.-.
T Consensus 212 ~~~-----~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 212 PET-----LAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHH-----HHHHHHhcccCCEEEEEccC
Confidence 110 00112345566667766543
No 485
>PRK06924 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.089 Score=50.13 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=35.5
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV 346 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~ 346 (454)
|+++|+|+ ||.|++++..|.+.|++|+++.|+. ++.+++.+..
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~ 46 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQY 46 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhcc
Confidence 57999995 7999999999999999999999987 5555555443
No 486
>PRK12746 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.13 Score=49.10 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=38.1
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i-~nRt~~~a~~la~~~ 346 (454)
+++++++|.|+ |++|++++..|.+.|++|.+ ..|+.++.+++.+.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~ 51 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI 51 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 45789999995 79999999999999998766 589888777766554
No 487
>PRK07775 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.15 Score=49.67 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~ 346 (454)
.+.|.++|.|+ |+.|++++..|.+.|++|++..|+.++.+++..++
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~ 54 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKI 54 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45689999996 79999999999999999999999988877765544
No 488
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.13 E-value=0.17 Score=51.52 Aligned_cols=69 Identities=30% Similarity=0.297 Sum_probs=49.0
Q ss_pred CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHH-hcCCcccc--c-c----cccc-CCCCccEEEECCC
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASD-VMGAARPF--E-D----ILNF-QPEKGAILANATP 372 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~-~~~~~~~~--~-~----l~~~-~~~~~divInat~ 372 (454)
+.+|+|+|+|.+|..++..++..|+ +|++++++++|.+ +|++ ++...+.. + + ..+. .-..+|++|.|+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~-~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLE-LAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH-HHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 3389999999999999888889999 8999999999865 5555 54432111 1 1 1010 1135899999997
No 489
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.081 Score=52.55 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=84.4
Q ss_pred ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccccc-----ccccCCCCccEEEECCCCCCCC
Q 012866 304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED-----ILNFQPEKGAILANATPLGMHP 377 (454)
Q Consensus 304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~-----l~~~~~~~~divInat~~g~~p 377 (454)
...+|.|| |-+|+-++.+|+..|.+-.+..|+..|...+...+|.+...|.- +.+ .....++|+||...=..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~-~~~~~~VVlncvGPyt~- 84 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEA-MASRTQVVLNCVGPYTR- 84 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHH-HHhcceEEEeccccccc-
Confidence 46899997 78899999999999998899999999999999999986644432 222 35678999999853211
Q ss_pred CCCCCCCChhcccCCcEEEEEecCCCC-----CHHHHHHHHCCCceeccHH
Q 012866 378 NTDRVPVSEETLRDYQLVFDAVYTPRK-----TRLLKDAEAAGAIIVSGVE 423 (454)
Q Consensus 378 ~~~~~~i~~~~l~~~~~v~D~~y~P~~-----T~ll~~A~~~G~~~~~Gl~ 423 (454)
...|+-..++..+.--+|+.=...- ...-++|++.|+.+++|.+
T Consensus 85 --~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cG 133 (382)
T COG3268 85 --YGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCG 133 (382)
T ss_pred --cccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCC
Confidence 2345666777777777888643221 1113578888999888754
No 490
>PRK05855 short chain dehydrogenase; Validated
Probab=94.10 E-value=0.12 Score=55.61 Aligned_cols=76 Identities=32% Similarity=0.466 Sum_probs=54.8
Q ss_pred CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CC
Q 012866 299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QP 361 (454)
Q Consensus 299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~ 361 (454)
...++++++|+|+ ||.|++++..|++.|++|.+++|+.++++++++.+. ... +++.+ +.++ ..
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 3466789999996 799999999999999999999999998888876552 111 12222 1110 12
Q ss_pred CCccEEEECCCCC
Q 012866 362 EKGAILANATPLG 374 (454)
Q Consensus 362 ~~~divInat~~g 374 (454)
...|++||+....
T Consensus 391 g~id~lv~~Ag~~ 403 (582)
T PRK05855 391 GVPDIVVNNAGIG 403 (582)
T ss_pred CCCcEEEECCccC
Confidence 3579999988654
No 491
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.09 E-value=0.13 Score=57.39 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.3
Q ss_pred CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 341 (454)
Q Consensus 303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~ 341 (454)
-++|.|||+|-||..|+..++..|.+|++++++.+..++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~ 351 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDL 351 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 368999999999999999999999999999999887654
No 492
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.07 E-value=0.096 Score=52.12 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.6
Q ss_pred CCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeC
Q 012866 300 PLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDI 334 (454)
Q Consensus 300 ~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nR 334 (454)
.++||.++|.|+| |+|++++..|++.|++|++..|
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~ 42 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW 42 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999996 9999999999999999998654
No 493
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.06 E-value=0.16 Score=51.25 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866 302 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 372 (454)
Q Consensus 302 ~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~ 372 (454)
.+.+|+|+|+|++|..++..++. .|. +|++++++++|.+. ++..+... ..+++.+ . ..+|++|+++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~-a~~~~~~~-~~~~~~~-~-~g~d~viD~~G 231 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL-FSFADETY-LIDDIPE-D-LAVDHAFECVG 231 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH-HhhcCcee-ehhhhhh-c-cCCcEEEECCC
Confidence 47899999999999998887775 565 89999999888654 34443321 1222222 1 24899999996
No 494
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.03 E-value=0.1 Score=51.96 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=68.2
Q ss_pred ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc------c--cc-ccccccCCCCccEEEECCC
Q 012866 304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA------R--PF-EDILNFQPEKGAILANATP 372 (454)
Q Consensus 304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~------~--~~-~~l~~~~~~~~divInat~ 372 (454)
++|.|||||+.|.+.++.|...+. ++.++++..++++-.+.++.... . .- .+.+ ..+++|+||-+..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~--~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYE--DLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChh--hhcCCCEEEEeCC
Confidence 378999999999999999987775 89999999888777766664311 0 00 1122 3577999988775
Q ss_pred CCCCCCCCCCCC-Ch------h----cc--cCCcEEEEEecCCCCCHHHHHHHHCCC
Q 012866 373 LGMHPNTDRVPV-SE------E----TL--RDYQLVFDAVYTPRKTRLLKDAEAAGA 416 (454)
Q Consensus 373 ~g~~p~~~~~~i-~~------~----~l--~~~~~v~D~~y~P~~T~ll~~A~~~G~ 416 (454)
+.-.|.-+...+ .. + .. .++ ..+=++-||.++--.-..+-.|.
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivlVvtNPvD~~ty~~~k~sg~ 134 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVLVVTNPVDILTYIAMKFSGF 134 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEEEecCcHHHHHHHHHHhcCC
Confidence 544454221111 10 0 00 122 34456668987655555555554
No 495
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.02 E-value=0.07 Score=49.78 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=33.2
Q ss_pred CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHH
Q 012866 301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE 337 (454)
Q Consensus 301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~ 337 (454)
+++++|+|+|+||.|..++..|+..|+ +|++++.+.-
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 457899999999999999999999999 8999987643
No 496
>PRK06398 aldose dehydrogenase; Validated
Probab=94.01 E-value=0.08 Score=51.01 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=34.6
Q ss_pred CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866 300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 338 (454)
Q Consensus 300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~ 338 (454)
++++|+++|+|+ ||.|++++..|.+.|++|++.+|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 367899999996 699999999999999999999998654
No 497
>PLN02650 dihydroflavonol-4-reductase
Probab=94.01 E-value=0.1 Score=52.71 Aligned_cols=71 Identities=14% Similarity=0.017 Sum_probs=48.3
Q ss_pred CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---C--C--c--ccccc---ccccCCCCccEEE
Q 012866 302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---G--A--A--RPFED---ILNFQPEKGAILA 368 (454)
Q Consensus 302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~--~--~--~~~~~---l~~~~~~~~divI 368 (454)
+.+++||.|+ |.+|+.++..|.+.|.+|+++.|+.+++..+..... . . . .++.+ +.+ .+.++|.||
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~-~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD-AIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH-HHhCCCEEE
Confidence 4678999995 899999999999999999999998776655543221 0 0 1 11211 222 245679999
Q ss_pred ECCCC
Q 012866 369 NATPL 373 (454)
Q Consensus 369 nat~~ 373 (454)
++...
T Consensus 83 H~A~~ 87 (351)
T PLN02650 83 HVATP 87 (351)
T ss_pred EeCCC
Confidence 87753
No 498
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.00 E-value=0.78 Score=43.72 Aligned_cols=98 Identities=21% Similarity=0.306 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeccCcch-------HHHHhhh-cCCCCeEEEEeeccCCC----CCCHhHHHHHHHHHHhc
Q 012866 20 HKRLEALHLAEDLGADYVDFELKVASN-------ILGKQYS-SHQSGTRFIVSCNLDCE----TPSEEDLGYLVSRMQAT 87 (454)
Q Consensus 20 ~~~~~ll~~~~~~~~~yvDvE~~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~----tp~~~~l~~~~~~~~~~ 87 (454)
+....-++.+++.|++.||+.+..... ...++.. .++.+.++|+--|.... .-+.+++....+.+.+.
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH
Confidence 555566889999999999999875431 2333332 34578999995543100 01234556557778889
Q ss_pred CCCEEEEecccCCHhHHHHHHHHhccCCCCEEEE
Q 012866 88 GADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY 121 (454)
Q Consensus 88 gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~ 121 (454)
|||++|+-.+ . |...+-++.+..+.|++++
T Consensus 156 GaD~Ik~~~~-~---~~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 156 GADIVKTKYT-G---DAESFKEVVEGCPVPVVIA 185 (235)
T ss_pred CCCEEEecCC-C---CHHHHHHHHhcCCCCEEEe
Confidence 9999999532 2 4444555555557787555
No 499
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=94.00 E-value=0.25 Score=47.69 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=106.3
Q ss_pred EEEecCCCCcccCHHHH-HHHHHhcCCCceEEecc--c--CCHHHHHHhc-CCCCCCEEEeccCchHHHHh-hh-hhcCH
Q 012866 176 FGLISKPVGHSKGPILH-NPTFRHVNYNGIYVPMF--V--DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMK-FC-DEVHP 247 (454)
Q Consensus 176 ~~liG~pv~hS~SP~~h-n~~f~~~gl~~~y~~~~--~--~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~-~~-d~~~~ 247 (454)
-+++|.+-+ |.+-.+. +++.++.|+...-..+. . +++.+.+..+ .++...|.-|-.|.++.+-+ ++ .-+++
T Consensus 43 ~~lvg~~pa-s~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~ 121 (309)
T KOG0089|consen 43 GFLVGEDPA-SQMYATNKTKACEEVGIKSFQYELPESESEDELESAIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSP 121 (309)
T ss_pred EEEeCCCcc-hHHHHHHHHHHHHHhhhcccccccccccCHHHHHHHHHHhcCCCceeeEEEEeeccccccHHHHHhhcCc
Confidence 455664432 3333322 67888999654322222 2 3566666555 68889999999999877752 22 11111
Q ss_pred hHhHccceeEEEEeCCCCeEEEeec-------cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866 248 LAQAIAAVNTIIRRPSDGKLIGYNT-------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA 319 (454)
Q Consensus 248 ~A~~igavNTi~~~~~~g~l~G~NT-------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~ 319 (454)
. +..- -|-.++- |++.=+++ --.|+++-|++ + +..+.||+++|+|=. -.|+.++
T Consensus 122 e-KDVD-gfh~~Ni---grl~ld~~~~~~lPcTP~gv~eiL~r-~------------gI~~~GKn~VVigRS~iVg~P~A 183 (309)
T KOG0089|consen 122 E-KDVD-GFHPLNI---GRLALDGREPLFLPCTPLGVVEILER-T------------GIETYGKNAVVIGRSKIVGMPLA 183 (309)
T ss_pred c-cccc-cccccch---hhhccccccccccCCchHHHHHHHHH-h------------CCeecCceEEEEcccccccchHH
Confidence 1 1100 1111111 33332333 25677777654 2 467889999999955 7799999
Q ss_pred HHHHHCCC--------eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccC
Q 012866 320 FGAKSRGA--------RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRD 391 (454)
Q Consensus 320 ~~L~~~G~--------~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~ 391 (454)
.-|+..|+ .|+++-|-..+ +.++. +...+|++|.+... | ..+..+++.+
T Consensus 184 ~LL~~dG~~~~~~~datVti~hr~t~~---------------~~lk~-ht~~adivi~a~g~---p----~li~~d~Ik~ 240 (309)
T KOG0089|consen 184 LLLHNDGAHVYSVDDATVTIFHRYTSK---------------PQLKH-HTRDADIVISAVGI---P----NLITSDMIKP 240 (309)
T ss_pred HHHhhcCCcccccCcceEEEEEcCCCc---------------hhHHH-HHHhcceeehhcCC---C----cccccceeec
Confidence 99988863 56777664322 11122 33457888865532 2 2456677777
Q ss_pred CcEEEEEecCCC
Q 012866 392 YQLVFDAVYTPR 403 (454)
Q Consensus 392 ~~~v~D~~y~P~ 403 (454)
+..+.|+-.++.
T Consensus 241 Ga~vidvgin~v 252 (309)
T KOG0089|consen 241 GAAVIDVGINRV 252 (309)
T ss_pred CceeEecCCCcc
Confidence 777777766544
No 500
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.13 Score=49.38 Aligned_cols=37 Identities=32% Similarity=0.558 Sum_probs=33.4
Q ss_pred CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE 337 (454)
Q Consensus 301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~ 337 (454)
+++++++|+|+ ||.|++++..|.+.|++|++++|+.+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~ 41 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE 41 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH
Confidence 56789999995 69999999999999999999999875
Done!