RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012866
(454 letters)
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 527 bits (1360), Expect = 0.0
Identities = 232/447 (51%), Positives = 304/447 (68%), Gaps = 2/447 (0%)
Query: 7 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS + + IVS +
Sbjct: 66 RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125
Query: 67 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
TPS EDL LV+R+Q TGADI+K+ + DI ++AR+F + S QVP I +GER
Sbjct: 126 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 185
Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
GL+S++L KF G L +G+L + V G PT++ L Y I DTKV+G+I KPV
Sbjct: 186 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 245
Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
HSK PI+HN F+ V++NG+YV + VD+L F YSS DFAGFS P+KEA ++ CDE
Sbjct: 246 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDE 305
Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
V PLA++I AVNTI+RR SDGKL+GYNTDC SI+AIED ++ G + S SPLA +
Sbjct: 306 VDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASK 365
Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
V+ GAGGAG+ALA+GAK +GA+VVI + +ERA LA + G A D+ N+ PE G
Sbjct: 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 425
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
+LAN T +GM PN + P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 485
Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIVL 451
F+RQA QF +FTG APKE +I+
Sbjct: 486 FVRQAYEQFEIFTGLPAPKELYWQIMS 512
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 321 bits (824), Expect = e-108
Identities = 85/313 (27%), Positives = 130/313 (41%), Gaps = 30/313 (9%)
Query: 153 GLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-- 210
E+L + A ++ GL++ P+ HS P + N Y+ V
Sbjct: 11 VDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN 70
Query: 211 DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGY 270
+ G V P K+ ++ DE+ P A+ + A+NTI+ DG L GY
Sbjct: 71 TTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGY 128
Query: 271 NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV 329
NTD I AI+++ G + G+ VL GAGGA A+ A G +
Sbjct: 129 NTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEI 175
Query: 330 VIF---DIDFERAKSLASDVMGAARPF--------EDILNFQPEKGAILANATPLGMHPN 378
+F D FE+A + A V + IL N T +GM P
Sbjct: 176 KLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPL 235
Query: 379 TDRVPV-SEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFT 437
+ + LR LV + VY P T+LL+ A+ AG + G M L Q QF L+T
Sbjct: 236 ENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWT 295
Query: 438 GKEAPKEFMREIV 450
GK P +++++++
Sbjct: 296 GKAFPLDYVKQVM 308
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 312 bits (803), Expect = e-105
Identities = 105/295 (35%), Positives = 152/295 (51%), Gaps = 27/295 (9%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
INA TKV GLI PV HS PI+HN F+ N +YV V ++LK +
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
GF+V P+K +MK+ DE+ AQ I AVNTI DGK IGYNTD + A+E+
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-- 122
Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+ + V+ GAGGA RA+AF + ++I + E+A++LA ++
Sbjct: 123 -----------IGRVKDKNIVIYGAGGAARAVAFELA-KDNNIIIANRTVEKAEALAKEI 170
Query: 347 -------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDYQLVFDA 398
G F L+ + I+ NATP+GM+PN D P V E LR+ +V D
Sbjct: 171 AEKLNKKFGEEVKFSG-LDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
+Y P +T LLK+A+ A ++G+ M + Q F ++TG E E M+ ++ K
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 284
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 311 bits (800), Expect = e-105
Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 27/286 (9%)
Query: 169 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 227
IN DT++ L +P + G HN + + N IY D++ + G
Sbjct: 2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 287
+V P+KE M F DE+HP AQAI +VNTI+ +G L YNTD A + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 288 RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDV 346
+ ++ V G+GG +A+ K+ G ++ I+ + + + LA+
Sbjct: 118 KN-------------AKVIVH-GSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163
Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--EETLRDYQLVFDAVYTPRK 404
+ I + + ++ IL N T +GM + + ++ + + + + FD V P +
Sbjct: 164 -----GYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218
Query: 405 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
T ++ A+A G +SG + + QA+ QF L+T + E + E
Sbjct: 219 TPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAA 264
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 308 bits (791), Expect = e-103
Identities = 87/298 (29%), Positives = 140/298 (46%), Gaps = 30/298 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
I T++ GLI+ P+ HS P +HN F + + +Y+ V +LK + + +
Sbjct: 33 ITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLR 92
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G++V P K + K+ D++ P A+ + AVNT++ DG L G+ TD + A+++A
Sbjct: 93 GWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-- 148
Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF---DIDFERAKSL 342
G + G+ + GAGGA A+ A G + IF D + A+
Sbjct: 149 -----------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT 197
Query: 343 ASDV------MGAARPFEDILNFQPE--KGAILANATPLGMHPNTDRVPV-SEETLRDYQ 393
+ ED + E + I NAT +GM P + S + LR
Sbjct: 198 VEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPEL 257
Query: 394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451
+V D VY P KTRLL+ AE G ++G+ M L Q F ++T KE P ++++EI+
Sbjct: 258 IVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 315
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 294 bits (756), Expect = 7e-98
Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 19/290 (6%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
KV+GLI PV HS P++HN F + Y V + + + A
Sbjct: 19 QGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIA 78
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G +V P+K AV+ F DEV A+ I AVNTII DG+L+GYNTD + A+E+
Sbjct: 79 GVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEE-- 134
Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASD 345
L G+ ++ GAGG R + F S A R+ + + E+A+ L +
Sbjct: 135 ----------MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE 184
Query: 346 VMGAARPFEDI--LNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR 403
+ + + + I+ N T +GMHP + P+S E LR +V D +Y P
Sbjct: 185 GDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPL 244
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
+T+ LK+A+A GA + +GV M + Q F +TG+ M+++V+
Sbjct: 245 ETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEA 294
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 291 bits (746), Expect = 1e-96
Identities = 81/295 (27%), Positives = 118/295 (40%), Gaps = 29/295 (9%)
Query: 172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPD 224
D+ + GLI + + S+ P +H +Y + DLK
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 225 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 284
F G ++ PYK+AV+ DEV A + AVNT++ G G+NTD +E+
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121
Query: 285 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLA 343
V GAGG G A+A+ + G ++ + D+D RA++LA
Sbjct: 122 -------------LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168
Query: 344 SDVMGAARPF------EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFD 397
+ A + + NATP+GM + L V D
Sbjct: 169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVGD 227
Query: 398 AVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452
VY P +T LLK A A G + G M + QA+ F LFTG E MRE L+
Sbjct: 228 VVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS 282
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 286 bits (735), Expect = 4e-95
Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 23/293 (7%)
Query: 164 YKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYS 221
+ INA T+++G+I PV HS P+ N R+ N +Y+ + ++LKK F +
Sbjct: 3 HHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFK 62
Query: 222 SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 281
+ G +V P+KE ++ D V A+ I AVNT+ +GK GYNTD + ++
Sbjct: 63 ALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSL 120
Query: 282 EDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 341
+ + + ++ GAGGA RA+ + GA+V +++ E+A
Sbjct: 121 KSL-------------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIK 167
Query: 342 LASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401
LA + +K ++ N T +G+ D + + ++ +V D +Y
Sbjct: 168 LAQKFPLEV---VNSPEEVIDKVQVIVNTTSVGLKDE-DPEIFNYDLIKKDHVVVDIIYK 223
Query: 402 PRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
T+LLK A+ GA ++ G+ M L Q I F ++ G E P V
Sbjct: 224 E--TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRDLR 274
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 284 bits (729), Expect = 4e-94
Identities = 73/284 (25%), Positives = 119/284 (41%), Gaps = 23/284 (8%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
++ +T ++GLI + +GHS +H F V GIY V + LK+ T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G +V PYK VMK E+ A+ I AVNT+ + G+NTD +
Sbjct: 61 GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115
Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASD 345
F + + V+ G+GGA RA+ K A+ + + + E+ + +
Sbjct: 116 ----------FRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE 165
Query: 346 VMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKT 405
KG ++ N TP GM+P PV +E + + D +Y P +T
Sbjct: 166 F-----KVISYDELSNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET 220
Query: 406 RLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
LK A +G V+G+ M + QA ++ + + EI
Sbjct: 221 LFLKYARESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVDEI 264
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 282 bits (725), Expect = 1e-93
Identities = 84/281 (29%), Positives = 121/281 (43%), Gaps = 25/281 (8%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
F ++ PV HS P +H + G Y + L F G ++
Sbjct: 2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRR-AFRGVNLT 60
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
P KEA + D V P AQ I AVNT+++ +G+L G+NTD + A++
Sbjct: 61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG------- 111
Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
G PL G VL GAGGAGRA+AF + G V +++ +RA +LA + A
Sbjct: 112 ------GIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Query: 352 PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDA 411
P E +L NAT +G+ P+ E + D VY P TR L++A
Sbjct: 165 PLEKAREA-----RLLVNATRVGLEDP-SASPLPAELFPEEGAAVDLVYRPLWTRFLREA 218
Query: 412 EAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452
+A G + +G+ M Q F L+TG M E
Sbjct: 219 KAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARR 259
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 260 bits (666), Expect = 1e-84
Identities = 76/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 233
F +I P+ HS P++H+ F+ +N Y + V + + S GF+V P
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 234 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 293
+KE ++ + D+++ A+++ AVNT++ + DGK IGYNTD + ++
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI--------- 111
Query: 294 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP 352
+ ++ GAGGA + +A + + + R + + ++
Sbjct: 112 ----YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI--NKIN 165
Query: 353 FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 412
+ E I+ N TP GM+ NTD +S L + LV D VY P KT +L +AE
Sbjct: 166 LSHAESHLDE-FDIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYKTPILIEAE 223
Query: 413 AAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
G I +G++MF+ Q F ++T E + M+ IV+ K
Sbjct: 224 QRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQK 264
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 233 bits (596), Expect = 3e-74
Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 31/287 (10%)
Query: 173 TKVFGLISKPVGHSKGPILHNPTFR----HVNYNGIYVPMFVDDLKKFFSTYSSPDFAGF 228
K FG+ P+ HSK P++HN F + + G Y P+ + S + +G
Sbjct: 3 LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62
Query: 229 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKER 288
+V P+KE + CD++ +A AVNT++ + +L+GYNTD +++
Sbjct: 63 NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115
Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348
+ ++ GAGG+ +ALA K +G +V + + +
Sbjct: 116 ------------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLD-FFQRLGC 162
Query: 349 AARPFEDILNFQPEKGAILANATPLGMHPNTD-RVPVSEETLRDYQLVFDAVYTPRKTRL 407
F ++ NAT +H V + ++ +L +D Y T
Sbjct: 163 DCFMEPPKSAFD-----LIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-LTPF 216
Query: 408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
L A+ G +M + QA F F+ + P E++ + F
Sbjct: 217 LSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 218 bits (557), Expect = 1e-68
Identities = 74/280 (26%), Positives = 119/280 (42%), Gaps = 37/280 (13%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 233
F +I PV HS P L+N F+ N Y + + ++ GF+ P
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILE-EYDGFNATIP 61
Query: 234 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 293
+KE VM++ + AQ I AVN + R GYNTD + ++E
Sbjct: 62 HKERVMRYVEPS-EDAQRIKAVNCVFR------GKGYNTDWVGVVKSLE----------- 103
Query: 294 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP 352
G + + V+ GAGGA RA+ + G + + + ERAK+L V
Sbjct: 104 ----GVEVKEPVVVV-GAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--KIFS 156
Query: 353 FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 412
+ + + L N T +GM + +PVS+++L++ LV+D +Y T L+ A
Sbjct: 157 LDQLDEVVKK-AKSLFNTTSVGMKG--EELPVSDDSLKNLSLVYDVIYFD--TPLVVKAR 211
Query: 413 AAGA-IIVSGVEMFLRQAIGQFNLFTGKEAP--KEFMREI 449
G I+ G MF QA+ ++ + KE E+
Sbjct: 212 KLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEV 251
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 199 bits (509), Expect = 3e-61
Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 20/284 (7%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
+ + + P+ HSK P +H + +N Y + +D + + S G +V
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
P+KE DE+ A AVNT++R DG+L+G NTD ++ +E
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL------- 113
Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
G +L GAGGA R + S V I + RA+ LA
Sbjct: 114 ------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGS 167
Query: 352 PFEDILNFQPEKGA-ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD 410
++ ++ NAT G+ D + + +D Y KT L
Sbjct: 168 IQALSMDELEGHEFDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQKGKTPFLAW 225
Query: 411 AEAAGAIIVS-GVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
E G+ + G+ M + QA F L+ G E + + + +
Sbjct: 226 CEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 269
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 198 bits (507), Expect = 7e-61
Identities = 62/293 (21%), Positives = 112/293 (38%), Gaps = 28/293 (9%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
+ + + + P+ HSK P +H R + IY V D + + +
Sbjct: 4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
G +V P+KE +F D + A+ AVNT+ + DG+++G NTD E + +
Sbjct: 64 GCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-- 120
Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASD 345
L G +L GAGGA R + + A + + + F +A+ LA
Sbjct: 121 -----------QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAEL 169
Query: 346 VMGA----ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401
V A+ FE + + ++ N+T + + + + +D +Y
Sbjct: 170 VAAYGEVKAQAFEQLK----QSYDVIINSTSASLDG--ELPAIDPVIFSSRSVCYDMMYG 223
Query: 402 PRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
T + A G + G+ M + QA F L+ G + + +
Sbjct: 224 KGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKN 276
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 194 bits (496), Expect = 3e-59
Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 20/285 (7%)
Query: 173 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSV 230
+ + +I +P+ H+K P++H + N Y + DD + + S G ++
Sbjct: 2 SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61
Query: 231 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 290
P+K + D AQ A N + DG+++ N D + IE+ +
Sbjct: 62 TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEENL----- 114
Query: 291 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGA 349
G PL R +L GAGGA R G + +VI + D +A +L +++ +
Sbjct: 115 -------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHS 167
Query: 350 ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLK 409
+ + I+ NAT + D P+ + L + L ++ Y T L+
Sbjct: 168 RLRISRYEALEGQSFDIVVNATSASLTA--DLPPLPADVLGEAALAYELAYGKGLTPFLR 225
Query: 410 DAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
A G + GV M + QA F + G + +
Sbjct: 226 LAREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLTIP 270
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 184 bits (469), Expect = 2e-55
Identities = 58/287 (20%), Positives = 106/287 (36%), Gaps = 25/287 (8%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
++ + P+ SK P++ N + Y+ D ++ + G ++
Sbjct: 2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
P+KE + DE A+ A NT+ + DGKL NTD +T ++
Sbjct: 62 SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL------- 113
Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
+ ++ GAGGA + + +V+ + F + K LA
Sbjct: 114 ------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGN 167
Query: 352 PFEDILNFQPEKGA-ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT-PRKTRLLK 409
++ P + ++ NAT G+ V E L+ +D Y T +
Sbjct: 168 IQAVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTPFIA 225
Query: 410 DAEAAGAIIVS-GVEMFLRQAIGQFNLFTGKEAP----KEFMREIVL 451
++ G VS G M + QA F+L+ G E +++ +L
Sbjct: 226 LCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKKAML 272
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 127 bits (320), Expect = 2e-34
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 5/162 (3%)
Query: 7 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
R GG + + E L +DY D EL ++ + ++G + I+S +
Sbjct: 61 RSPEEGGREVKNREELFEELSP----LSDYTDIELSSRGLLVKLYNITKEAGKKLIISYH 116
Query: 67 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
TP + ++ G I K+ N ++AR+ + + I S+G+
Sbjct: 117 NFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMGDY 175
Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
G +S+L F + Y SL+ G +E + + K +
Sbjct: 176 GKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY 217
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover,
shikimate pathway, lyase; 1.90A {Staphylococcus aureus
subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Length = 238
Score = 123 bits (311), Expect = 5e-33
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 8/168 (4%)
Query: 7 RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFI 62
R K GG + L + LA G D +D E + +I Q Q I
Sbjct: 70 RTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVI 129
Query: 63 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPI 118
+S + TP ++L ++ +MQ + +KL ++ ++ + Q +S +
Sbjct: 130 ISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV 189
Query: 119 IAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 166
+ S+ + GL+S+ F GAL YG + G V L+ +
Sbjct: 190 VGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 237
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis,
3-dehydroquinase, structural genomi NPPSFA; 2.00A
{Geobacillus kaustophilus}
Length = 257
Score = 124 bits (312), Expect = 6e-33
Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 6/168 (3%)
Query: 7 RPKWAGGLYEGDEHKRLEAL--HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
R + GG + L + D VD+EL I + + + +VS
Sbjct: 86 RSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSVWLVVS 145
Query: 65 CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIA 120
+ TP +E L + + + GADI K+ ++ + Q + +P+I
Sbjct: 146 RHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLIT 205
Query: 121 YSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
++G G +++L F A+ + + G ++ +R +
Sbjct: 206 MAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQ 253
>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A
{Archaeoglobus fulgidus}
Length = 196
Score = 117 bits (294), Expect = 5e-31
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
Query: 7 RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
R GG +EGDE +R+E + + L DYVD E + + R I S
Sbjct: 45 RRVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSA-------FDFNCRIIESY 97
Query: 66 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 125
+ TP +L ++ D++K+ ++ I ++L++ ++A+ +GE
Sbjct: 98 HNFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGE 153
Query: 126 RGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 166
R +++L+ +Y + G +++ R+
Sbjct: 154 RFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISR 194
>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate,
amino-acid biosynthesis, aromatic amino acid
biosynthesis, lyase; HET: DHS; 2.20A {Clostridium
difficile}
Length = 258
Score = 115 bits (289), Expect = 1e-29
Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 7/175 (4%)
Query: 5 VSRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGK-QYSSHQSGTRFI 62
R GG ++ D +D EL + ++ + +H+ + I
Sbjct: 84 TFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVI 143
Query: 63 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVP 117
+S + +TP +E++ + RMQ GAD+ K+ + ++ + + + + P
Sbjct: 144 ISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRP 203
Query: 118 IIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD 172
II S+ G++S+L F AL +G+ K G + + L + H + +
Sbjct: 204 IITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKSIN 258
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
barrel, lyase; 1.03A {Salmonella enterica subsp} PDB:
3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A
1l9w_A* 1qfe_A*
Length = 276
Score = 115 bits (288), Expect = 2e-29
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Query: 7 RPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGK-QYSSHQSGTRFIVS 64
R GG + ++ A D G D +D EL + + +HQ I+S
Sbjct: 106 RSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMS 165
Query: 65 CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVPII 119
+ +TP+ E++ + +MQ GADI K+ ++ + + PII
Sbjct: 166 NHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPII 225
Query: 120 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
S+ + G++S+L F A +G++K G +V LR + H
Sbjct: 226 TMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 112 bits (282), Expect = 6e-29
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 12/170 (7%)
Query: 7 RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
R GG + ++ + + DY+DFE ++ + I+S
Sbjct: 65 RTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLDFP----NLILSY 120
Query: 66 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVPIIA 120
+ ETP E+L S M ++K+ ++ + + +
Sbjct: 121 HNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQEFAT 178
Query: 121 YSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 170
S+G+ G +S+ + Y SL G T+ +++ +V ++
Sbjct: 179 ISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD 228
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 105 bits (263), Expect = 5e-26
Identities = 32/170 (18%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 7 RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
R + GG L + +A DY+DFE ++L + Y + I+S
Sbjct: 96 RTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMYDF----SNLILSY 151
Query: 66 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVPIIA 120
+ ETP E+L + S + A ++K+ + ++ + + +
Sbjct: 152 HNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNPNQEYVT 209
Query: 121 YSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 170
S+ + G +S+L + + + SL+ G ++ +R+ +V N
Sbjct: 210 MSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLDAN 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 1e-08
Identities = 63/324 (19%), Positives = 99/324 (30%), Gaps = 96/324 (29%)
Query: 61 FIVSCNLDCETPSEEDLGYLVSRMQAT---GADIIKLVF-----SVNDITEIAR-----I 107
++V+ L TP E L S ++ ++ V S R +
Sbjct: 249 YVVTAKLLGFTPGE-----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 108 FQLLSHCQ--VP-------IIAYSV--GE---------RGL-VSQLLS--PKFNGAL--- 141
F + C P I+ S+ E L Q+ K N L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 142 --VYGSLKGTP---VL-GLPTVESLRQ-TYKVEHINADTKVFGLISKPVGHSK-GPILHN 193
V SL V+ G P +SL + A + GL + S+ N
Sbjct: 364 KQVEISLVNGAKNLVVSGPP--QSLYGLNLTLRKAKAPS---GLDQSRIPFSERKLKFSN 418
Query: 194 ---PT---FRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 247
P F H + + DL K ++++ D V + + ++
Sbjct: 419 RFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSG--S 474
Query: 248 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFV 307
+++ I V+ IIR P + T + T I D FG P G
Sbjct: 475 ISERI--VDCIIRLPVK-----WETTTQFKATHILD-------------FG-P--G---- 507
Query: 308 LAGAGGAGRALAFGAKSRGARVVI 331
GA G G G RV++
Sbjct: 508 --GASGLGVLTHRNKDGTGVRVIV 529
Score = 55.1 bits (132), Expect = 3e-08
Identities = 78/502 (15%), Positives = 130/502 (25%), Gaps = 203/502 (40%)
Query: 68 DCETPSEEDL-----GYLVSRMQATGA----DIIKLVF--------SVNDITEIARIFQL 110
D E + +L GY+ S ++ + ++ L NDI
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--------- 101
Query: 111 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 170
H L ++LL T L + L + Y I
Sbjct: 102 --HA-------------LAAKLLQEN-----------DTT---LVKTKELIKNY----IT 128
Query: 171 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYN--GIYVPMF---------VDDLKKFFST 219
A + +P L FR V + +F ++L+ + T
Sbjct: 129 ARI----MAKRPFDKKSNSAL----FRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQT 179
Query: 220 YSSPDFAGFSVGFPYKEAVMKFCDEV-HPLAQAIAAVNTI----------IRRPSDGKLI 268
Y ++KF E L + + + PS+
Sbjct: 180 YH-----------VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 269 GYNTDCEASITAI--------EDAIKERGYKNGTASFGSPLAGRMF-VLAGAGGAGRAL- 318
Y S I K G+ +P G + L GA G + L
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGF--------TP--GELRSYLKGATGHSQGLV 278
Query: 319 ------------AFGAKSRGARVVIFDIDFE-----RAKSLASDVM--------GAARP- 352
+F R A V+F I SL ++ G P
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 353 -----------FEDI--LN-FQPEKGAI---LANA--------TPLGMH----------- 376
+ + N P + L N P ++
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 377 -PNTD--RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE-------AAGAIIVSGVEMFL 426
D R+P SE L+ + F V +P + LL A + + ++
Sbjct: 399 PSGLDQSRIPFSERKLK-FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-- 455
Query: 427 RQAIGQFNLFTGKEAPKEFMRE 448
I ++ F G + +R
Sbjct: 456 --QIPVYDTFDGSD-----LRV 470
Score = 40.4 bits (94), Expect = 0.001
Identities = 31/139 (22%), Positives = 43/139 (30%), Gaps = 57/139 (41%)
Query: 102 TEIARIFQLL-SHCQVPIIAY----SVGE----------------------RGLVSQLLS 134
E A F+ L S +P A S+GE RG+ Q+
Sbjct: 1739 MEKA-AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 135 PKF-NGALVYGSLKGTP---VLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPI 190
P+ G YG + P + E+L+ VE + T L+ I
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASF-SQEALQYV--VERVGKRTG--WLVE---------I 1843
Query: 191 LHNPTFRHVNYN---GIYV 206
VNYN YV
Sbjct: 1844 --------VNYNVENQQYV 1854
Score = 36.6 bits (84), Expect = 0.021
Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 73/206 (35%)
Query: 153 GLPTVESLRQTYK--VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--- 207
G + +R+ Y + D K+ ++ + + TFR
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKL---KTEKIFKEINEHSTSYTFRS--------EKGL 1725
Query: 208 ----------MFV------DDLKKFFSTYSSPDFAGFSVG-----------FPYKEAV-- 238
+ + +DLK + FAG S+G + V
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 239 -------MKFC---DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKER 288
M+ DE+ + A+N P + + EA +E K
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAIN-----PGR---VAASFSQEALQYVVERVGKRT 1837
Query: 289 GYK----NGTASFGSPLAGRMFVLAG 310
G+ N + + +V AG
Sbjct: 1838 GWLVEIVN----YNVE--NQQYVAAG 1857
Score = 29.2 bits (65), Expect = 3.6
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 35/87 (40%)
Query: 3 CNVSRP-KWAGGLYEGDEHKRLEALHLAEDLGADYVDF---------ELKVASNILGKQY 52
C + P KW + + +A H+ +DF L N G
Sbjct: 482 CIIRLPVKW-------ETTTQFKATHI--------LDFGPGGASGLGVL-THRNKDG--- 522
Query: 53 SSHQSGTRFIVSCNLDCETPSEEDLGY 79
+G R IV+ LD ++D G+
Sbjct: 523 ----TGVRVIVAGTLD--INPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 8e-07
Identities = 81/517 (15%), Positives = 148/517 (28%), Gaps = 185/517 (35%)
Query: 4 NVSRPKWAGGLYEGDEHKRL-EALHLAEDLGADYVDFELKVASNIL-------GKQ---- 51
NVSR + + +L +AL EL+ A N+L GK
Sbjct: 130 NVSRLQ---------PYLKLRQAL------------LELRPAKNVLIDGVLGSGKTWVAL 168
Query: 52 --YSSHQSGTRF---IVSCNL-DCETPSE-----EDLGYLVSRMQATGADIIK-LVFSVN 99
S++ + I NL +C +P + L Y + + +D + ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 100 DI-TEIARIFQLLSHCQVPII-----------AYSVGERGLV---SQLLSPKFNGALVYG 144
I E+ R+ + + ++ A+++ + L+ + ++ + A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 145 SLKGTPVLGLPTVESLRQTYKVEHINADTKVFGL------ISKPVGHS------KGPILH 192
+ L E K D + L + P S + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTN-PRRLSIIAESIRDGLAT 343
Query: 193 NPTFRHVNYNGI--YVPMFVDDL-----KKFFSTYSSPDFAGF--SVGFPYK-------- 235
++HVN + + + ++ L +K F + F S P
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFD 398
Query: 236 ---EAVMKFCDEVHP--LAQAIAAVNTI--------IRRPSDG------KLIG-YNT--- 272
VM +++H L + +TI ++ + ++ YN
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 273 -DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 331
D + I D Y F S + L R F R+V
Sbjct: 459 FDSDDLIPPYLD-----QY------FYSHIG---HHLKNIEHPERMTLF-------RMVF 497
Query: 332 FDIDFERAK----SLASDVMGAA----------------------RPFEDILNFQPEKGA 365
D F K S A + G+ R IL+F P+
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 366 ILANATPLGMHPNTDRV---------PVSEETLRDYQ 393
L TD + + EE + Q
Sbjct: 558 NLIC------SKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 46.4 bits (109), Expect = 2e-05
Identities = 51/333 (15%), Positives = 86/333 (25%), Gaps = 113/333 (33%)
Query: 198 HVNYNGIYVPMFVDDLKKFFSTYSSPDF--AGFS-------VGFPY-------------- 234
Y I + +F D F D + S +
Sbjct: 15 QYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 235 --KEAVMKFCDEVHP-----LAQAIAAVNTIIRRPS---------------DGKLIG-YN 271
+E V KF +EV L I R+PS D ++ YN
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 272 TDCEASITAIEDAIKE-RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV 330
+ A+ E R KN ++ G G+G K+ A V
Sbjct: 131 VSRLQPYLKLRQALLELRPAKN-------------VLIDGVLGSG-------KTWVALDV 170
Query: 331 IFDIDFERAKSLASDV----MGAARPFEDIL-NFQPEKGAILANATPLGMHPNTDRVPVS 385
+ + + + E +L Q I N T H + ++ +
Sbjct: 171 CLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 386 EE--------TLRDYQ---LVFDAVYTPR---------K----TRLLKDAEAAGAIIVSG 421
+ Y+ LV V + K TR + + A +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 422 VEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
+ + T E + +L K+
Sbjct: 289 ISL-----DHHSMTLTPDEV------KSLLLKY 310
Score = 36.0 bits (82), Expect = 0.031
Identities = 51/389 (13%), Positives = 108/389 (27%), Gaps = 126/389 (32%)
Query: 36 YVDFELKVASNILGKQYSSHQSGTRFIVSCN-------LDCETPSEEDLGYLVSRMQATG 88
++DFE HQ + I+S DC+ + L +
Sbjct: 6 HMDFET-----------GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL------SK 48
Query: 89 ADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
+I ++ S + ++ R+F L Q ++ V E +L Y L
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE------VLRIN------YKFL-- 94
Query: 149 TPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPM 208
+ ++ + + T+++ I + + + N N ++
Sbjct: 95 --------MSPIKTEQRQP--SMMTRMY--IEQ----------RDRLY---NDNQVFAKY 129
Query: 209 FV------DDLKKFFSTYSSPDF------AGF--SV-------------GFPYKEAVMKF 241
V L++ G + +K +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 242 --CDEVHPLAQAIAAVNTIIR-----RPSDGKLIGYNTDCEASITAIEDAIKERGYKNGT 294
C+ + + + + I R I + + +K + Y+N
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENC- 246
Query: 295 ASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
+ VL A AF ++++ R K + D + AA
Sbjct: 247 ----------LLVLLNVQNAKAWNAFNLSC---KILL----TTRFKQVT-DFLSAATTTH 288
Query: 355 DILN-----FQPEKG-AILANATPLGMHP 377
L+ P++ ++L L P
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY--LDCRP 315
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 42.4 bits (100), Expect = 2e-04
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
AGR + G G G L ++G +V I DI + + +
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL 52
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 41.6 bits (98), Expect = 3e-04
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
GR V+ G G G A A RGAR+V+ D+D + + + G
Sbjct: 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ 78
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 40.7 bits (96), Expect = 5e-04
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+ G + ++ GAG G GR A+ +++V++DI+ + A+
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC 75
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 40.3 bits (95), Expect = 8e-04
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 301 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
G +++G AGG G A + G VVI D+ E+ K+LA ++ A
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAE 79
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 39.6 bits (93), Expect = 0.001
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
GA G G A A +GA V+ D+ ++ A +
Sbjct: 20 GASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCV 61
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 39.1 bits (92), Expect = 0.001
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
+ G G A+ GA V+ D+ + A+++ A R
Sbjct: 15 ASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVR 56
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 39.1 bits (90), Expect = 0.002
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQP-----EKG 364
G+G R G +V + E AK L++ V + D+ + K
Sbjct: 10 GSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKH 69
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD-AEAAGAIIVSGV 422
++ + P H V + +R + V Y L A+ AG +++ +
Sbjct: 70 DLVISLIPYTFHA-----TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEI 123
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 38.3 bits (90), Expect = 0.003
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
LAG++ ++ GAG G A G V+ DID + A + A+ + A
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLAD--EGCHVLCADIDGDAADAAATKIGCGAAACR 81
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 38.3 bits (90), Expect = 0.003
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
L G++ ++ GAG G G A F GA+VVI D D A+ +A ++ AA
Sbjct: 7 LEGKVALITGAGSGFGEGMAKRFAK--GGAKVVIVDRDKAGAERVAGEIGDAALAVA 61
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 37.9 bits (89), Expect = 0.004
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
GA G G A A + GARVV+ D+ E + A ++ AAR
Sbjct: 13 GARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAAR 54
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 37.9 bits (89), Expect = 0.004
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
GA G G + + GA+VV DI E K++A+++ AAR
Sbjct: 15 GARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAAR 56
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 36.3 bits (85), Expect = 0.005
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
G +L G G +A +V + + + ++ A DI
Sbjct: 19 NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDI 74
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 37.3 bits (87), Expect = 0.006
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA-----SDVMGAARPFEDILNFQPEKG 364
G+G G + KS+ + D + S E I + +
Sbjct: 30 GSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVD 89
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFD 397
+ A G + S+E L+ + + D
Sbjct: 90 TFVCAA---GG--WSGGNASSDEFLKSVKGMID 117
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 37.5 bits (88), Expect = 0.006
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
L+GR ++ G G G A+A GA V I D+D A+++ + + E
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVE 64
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 37.5 bits (88), Expect = 0.006
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 310 GAGGAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
G G GR A F GA VV+ D++ + A +A+++ A
Sbjct: 35 GGSGIGRATAELFAK--NGAYVVVADVNEDAAVRVANEIGSKAFGVR 79
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 37.1 bits (87), Expect = 0.006
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
L G+ ++ G+ G GRA A GA V I DID ERA+ A+++ AA +
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQ 60
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 37.2 bits (86), Expect = 0.007
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR-MFVLAGAGGAGRALAFGAKSRGA 327
G NT A + + + G + G+ VLAG G G A GA
Sbjct: 97 GSNTTAAAGVALVV------------KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA 144
Query: 328 RVVIFDIDFERAKSLASDV 346
VV+ ++A++ A V
Sbjct: 145 EVVLCGRKLDKAQAAADSV 163
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 37.2 bits (87), Expect = 0.008
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+P+ G++ V+ GA G GR +A GA V I + + +A +
Sbjct: 1 APMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA 49
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 37.1 bits (87), Expect = 0.008
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
GA G G + GA+V DI+ + LA+++ +
Sbjct: 14 GASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSM 55
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 36.7 bits (86), Expect = 0.010
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 310 GAGGAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
GG G + GARVV+ D+ A+ V A
Sbjct: 19 ACGGIGLETSRVLAR--AGARVVLADLPETDLAGAAASVGRGAVHHV 63
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 36.2 bits (84), Expect = 0.016
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 308 LAGAGGAGR--ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDI 356
+ G G G+ K GA +V + D++ E A+ + A + +
Sbjct: 7 VIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPND 58
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 36.2 bits (84), Expect = 0.016
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 308 LAGAGGAGR--ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDI 356
+ G G G G VV + DI RA++ A+ + D
Sbjct: 28 IVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDY 79
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 36.0 bits (84), Expect = 0.017
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP 352
++ ++ GAG G GRAL G RG +V + ++R + + A
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIG 53
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 36.2 bits (84), Expect = 0.017
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 291 KNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
G S G + GR+ ++ GAG G GRA A + GARVV+ DI S AS A
Sbjct: 16 TQGPGSMGV-VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAA 74
Query: 350 ARPFEDI 356
++I
Sbjct: 75 QSVVDEI 81
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 35.6 bits (83), Expect = 0.017
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 305 MFVL-AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
M V+ G LA SR VVI + D E + A
Sbjct: 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK 42
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 36.0 bits (84), Expect = 0.018
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
AG++ V+ G G GAG AF GARVVI D D ++L ++ GA
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVN--SGARVVICDKDESGGRALEQELPGA 56
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 35.5 bits (83), Expect = 0.023
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
+ G G A+A +RG RV D+ E + A A
Sbjct: 10 ASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY 50
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 35.6 bits (83), Expect = 0.023
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
R+ ++ G G G GRA A + GA++ + D+ E ++ + V+ A
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA 61
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 35.7 bits (83), Expect = 0.024
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
GA G GRAL + GARV + D ER + L G A
Sbjct: 13 GASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNA 53
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 35.8 bits (83), Expect = 0.026
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 335
+AG++ V+ G G G+ A GARV + ++D
Sbjct: 245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVD 279
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 35.6 bits (83), Expect = 0.027
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 293 GTASFGSPLAGRM-----FVLAGAGGAGR--ALAFGAKSRGARVVIFDIDFERAKSLASD 345
G+ S R+ + GAGG G A F GA+VVI DI + + + ++
Sbjct: 2 GSTSTPDSSTNRLQDKVAIITGGAGGIGETTAKLFVR--YGAKVVIADIADDHGQKVCNN 59
Query: 346 V 346
+
Sbjct: 60 I 60
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 35.2 bits (82), Expect = 0.028
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 301 LAGRMFVLAGAG-GAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
L G++ ++ GA G GR AL F GA+VV+ + L ++ G
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAR--EGAKVVVTARNGNALAELTDEIAGG 55
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 35.2 bits (82), Expect = 0.030
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
+G ++ GAG G GR + GA+VV SLA + G
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGI 54
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 35.3 bits (82), Expect = 0.032
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 335
+AG+ + G G G+ A + GARVV+ ++D
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVD 243
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 34.8 bits (81), Expect = 0.035
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
LAGR ++ GAG G GR + GARVV SL + G
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI 54
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 35.0 bits (81), Expect = 0.041
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 308 LAGAGGAGR--ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDI 356
+ G G G A K +G ++V +D + + ++ +G + +
Sbjct: 13 IIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTNY 63
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 34.8 bits (81), Expect = 0.042
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
L+ + V G+ G G A GA V D ER ++ S
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESA 51
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 34.6 bits (80), Expect = 0.043
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
++ + V G G G A+ K G V+ D+ V G
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKN 52
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 34.4 bits (80), Expect = 0.046
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 310 GAGGAGRALA--FGAKSRGARVVIFDIDFERAKSLASDV 346
G G G A+A F GA+V+I + + A V
Sbjct: 14 GTLGIGLAIATKFVE--EGAKVMITGRHSDVGEKAAKSV 50
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 35.2 bits (81), Expect = 0.047
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERA 339
G GT + + G+ ++ G G G+ A K +GARV + +ID A
Sbjct: 263 GINRGTDAL---IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINA 310
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 34.5 bits (80), Expect = 0.048
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
G G A A G + + D++ E + + V
Sbjct: 15 AGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK 54
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 34.8 bits (81), Expect = 0.050
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDIL 357
L G + G G +AL + GA++V+ D++ + ++ A I
Sbjct: 168 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIY 227
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 34.8 bits (81), Expect = 0.052
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 280 AIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID---F 336
A++ + RG L G ++ G G G +LA A GA++++ D D
Sbjct: 160 AMKATVAHRGLG--------SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 211
Query: 337 ERAKSLASDVMGAARPFE---DIL 357
A +L + D+
Sbjct: 212 AHAVALGHTAVALEDVLSTPCDVF 235
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 34.9 bits (81), Expect = 0.056
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 335
G+ V+ G G G+ K+ G+ V + +ID
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEID 252
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 34.5 bits (80), Expect = 0.056
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 293 GTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
G S R +++ G G G G+ +A G + GA V+I + ++ ++
Sbjct: 1 GPGSMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA 60
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 34.4 bits (80), Expect = 0.060
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
G+ G G A+ GA+VV +D + +++
Sbjct: 22 GSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF 58
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 34.1 bits (79), Expect = 0.062
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
L ++ V++G G G LA +GA +V+ ER + +A V R
Sbjct: 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR 60
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 34.0 bits (79), Expect = 0.063
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
L G V G G + + GAR+++ D + A ++ A
Sbjct: 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAA 58
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 34.1 bits (79), Expect = 0.063
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
S ++ ++ GAG G GRA+A G V + + + A+++ A
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVP 80
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 34.8 bits (80), Expect = 0.064
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 288 RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERA 339
G T ++G++ V+ G G G+ A K GARV I +ID A
Sbjct: 245 DGLMRATDFL---ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICA 293
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 34.2 bits (79), Expect = 0.064
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP 352
L G++ ++ G G G+A+ G+ VVI ER KS A ++ P
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP 68
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 34.6 bits (80), Expect = 0.070
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 18 DEHKRLEALHLAEDLGADYV----DFELKVASNILGKQYSSHQSG 58
D KRLEA+ EDLGA + D E++ A +LG++ QSG
Sbjct: 928 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE----QSG 968
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 33.7 bits (78), Expect = 0.078
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
A G GRA A +GA+V + D + E + + P +
Sbjct: 15 AAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQK 59
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 34.0 bits (79), Expect = 0.079
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
GA G A GARV+I D+D A D+
Sbjct: 21 GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL 57
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 33.8 bits (78), Expect = 0.080
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDID 335
R + V G G G ++R V D+
Sbjct: 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV 40
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 34.0 bits (79), Expect = 0.081
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
L G+ ++ GA G G +A + GAR+V+ D + +
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF 68
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 33.6 bits (78), Expect = 0.085
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
L G++ + A A G G+A A GA+V+ DI+ + + L R
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTR 55
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 33.7 bits (78), Expect = 0.091
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS--DVM 347
GA G GRA A K+RG RVV+ D+ E + DV
Sbjct: 10 GASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVT 49
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 33.4 bits (77), Expect = 0.099
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILAN 369
A G G A ++ G ++V DI + S G + D+L + L
Sbjct: 9 CATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVL 68
Query: 370 A 370
Sbjct: 69 C 69
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 33.4 bits (77), Expect = 0.100
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 310 GAGGAGRA--LAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAIL 367
A G G A G V+ D ++ S G +L+ L
Sbjct: 9 SASGIGAALKELLAR--AGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGL 66
Query: 368 ANA 370
Sbjct: 67 VCC 69
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 33.6 bits (78), Expect = 0.10
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
L ++ ++ GAG G GRA+A + VV ++ +R + ++ G
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM 54
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 33.8 bits (78), Expect = 0.11
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 309 AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM--GA--ARPFEDILNFQPEKG 364
G G G A A G + ++ E+ + S V + + + ++
Sbjct: 10 VGGGPGGSTAARYAAKYGLKTLM----IEKRPEIGSPVRCGEGLSKGILNE-ADIKADRS 64
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKT---RLLKDAEAAGAIIVSG 421
I ++ +++ P+ ++ + V + R L A AGA +
Sbjct: 65 FIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVL--ERDKFDKHLAALAAKAGADVWVK 122
Query: 422 VE 423
Sbjct: 123 SP 124
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
G++ + G G G G+ + S GA+ VI + K+ A +
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT 74
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 33.3 bits (77), Expect = 0.13
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 301 LAGRMFVLAGAG-GAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
+ ++ GAG G GR ALA A G V + +A +++GA
Sbjct: 26 QPSPVALITGAGSGIGRATALALAA--DGVTVGALGRTRTEVEEVADEIVGA 75
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 33.3 bits (77), Expect = 0.14
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
++ ++ G+G G G+A A GA VV+ DI+ E A+++A +
Sbjct: 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI 53
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 32.9 bits (76), Expect = 0.14
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
G G G+ + G +V DID +R+ A +
Sbjct: 10 GGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE 45
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 33.4 bits (77), Expect = 0.14
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER---AKSLASDV 346
G ++ GAG G AK+ GA VV R AK+ +DV
Sbjct: 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV 215
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 33.3 bits (77), Expect = 0.17
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 297 FGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFED 355
GS L + ++ GAG G+ +A RG V++ + +ERA LA D+ G A F++
Sbjct: 162 LGS-LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDE 220
Query: 356 I 356
+
Sbjct: 221 L 221
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 32.6 bits (75), Expect = 0.18
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
+ GAG G +A + G V + E+ L ++
Sbjct: 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE 50
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 32.8 bits (75), Expect = 0.20
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 21/79 (26%)
Query: 309 AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG---- 364
G G G +A + G V + +ER + + G L+ G
Sbjct: 32 IGGGPVGLTMAKLLQQNGIDVSV----YERDNDREARIFGGT------LDLHKGSGQEAM 81
Query: 365 -------AILANATPLGMH 376
A P+G++
Sbjct: 82 KKAGLLQTYYDLALPMGVN 100
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 32.9 bits (76), Expect = 0.20
Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 37/135 (27%)
Query: 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILN 358
+ G+ V+ G G G + +RG + D R D + A
Sbjct: 1 ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMD---TRMTPPGLDKLPEAVERH---- 53
Query: 359 FQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT----PRKTRLLKDAEAA 414
G +E L D + L A A
Sbjct: 54 --------------TGSLN--------DEWLMA----ADLIVASPGIALAHPSLSAAADA 87
Query: 415 GAIIVSGVEMFLRQA 429
G IV +E+F R+A
Sbjct: 88 GIEIVGDIELFCREA 102
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 32.6 bits (75), Expect = 0.22
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 294 TASFGSPLAGRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
F S +A G G GR +A + G VVI + + A +
Sbjct: 17 NLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGE 76
Query: 346 VMGAA 350
+ G
Sbjct: 77 IGGRT 81
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 32.7 bits (75), Expect = 0.22
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 334
GR+ ++ GAG G GRA A RGA VV+ D+
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL 41
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 32.2 bits (73), Expect = 0.24
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILAN 369
G+G R+LA G +VV+ + +R L E + ++
Sbjct: 35 GSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAV-----SSPEVIFV 89
Query: 370 ATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA 414
A + + + L LV + T ++ +++ A
Sbjct: 90 AVFREHYS---SLCSLSDQLAGKILVDVSNPTEQEHLQHRESNAE 131
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 32.7 bits (75), Expect = 0.26
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 334
++ ++ GAG G G+ + GA+VV+ D+
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDL 40
Score = 32.7 bits (75), Expect = 0.27
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 249 AQAIAAVNTIIRRPSDGKLIGYNTDCEASI----TAIEDAIKERGYKNGTASFGSPLAGR 304
A+ +A + I D + Y + + + + ++ + + + L +
Sbjct: 264 AEVVAKRFSEILDYDDSRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDK 323
Query: 305 MFVLAGAG-GAGRALAFGAKSRGARVVIFDID 335
+ ++ GAG G G+ A GA+VV+ D
Sbjct: 324 VVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK 355
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 32.1 bits (74), Expect = 0.27
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
L G+ ++ GAG G G+ +A + GA VV+ DI+ + A + ++
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 32.2 bits (74), Expect = 0.28
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFER-AKSLASDVMGAA 350
GA G G A GA+VV+ DI E L AA
Sbjct: 17 GASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAA 58
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 32.1 bits (74), Expect = 0.30
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+ G++ V AG+ G G A A GAR+++F + E+ ++ AS +
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI 51
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 32.1 bits (74), Expect = 0.31
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
L R+ ++ GA G GR A GA V++ + E+ + +A
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVA 53
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 32.1 bits (74), Expect = 0.32
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
G G+A+A G V I D + AK++AS++
Sbjct: 10 AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI 46
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 32.1 bits (74), Expect = 0.33
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
L+G+ ++ GA G G+ +A GA+V + + + +A ++
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEI 76
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 32.2 bits (74), Expect = 0.33
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 33/142 (23%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQ 360
+ ++ G +G A A GA V + D +
Sbjct: 7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVND-------------GKPFDENPTAQSLL 53
Query: 361 PEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT----PRKTRLLKDAEAAGA 416
E ++ G HP E L + F + P ++K A
Sbjct: 54 EEGIKVV-----CGSHP--------LELLDE---DFCYMIKNPGIPYNNPMVKKALEKQI 97
Query: 417 IIVSGVEMFLRQAIGQFNLFTG 438
+++ VE+ + Q TG
Sbjct: 98 PVLTEVELAYLVSESQLIGITG 119
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.8 bits (72), Expect = 0.34
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
+ G + G G G ++A + GA+V + + LA PF
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGAR---ESDLLARIAEMGMEPFH 203
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 32.5 bits (74), Expect = 0.34
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 334
GR+ V+ GAG G GR A RGA+VV+ D+
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDL 51
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 31.7 bits (73), Expect = 0.35
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
++G++ + + G G A+A G GA +V+ +R A +
Sbjct: 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF 55
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 32.1 bits (73), Expect = 0.36
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
G G G +A + GA V + + +++ +++
Sbjct: 164 GLGRTGMTIARTFAALGANVKVGARSSAHLARI-TEMGLVPFHTDEL 209
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 32.1 bits (73), Expect = 0.37
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
LAG + GA G G+A+A A GA +VI + L + AA
Sbjct: 41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAE 94
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 32.1 bits (73), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 288 RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERA 339
G K T +AG++ V+AG G G+ A + GA V + +ID A
Sbjct: 265 DGIKRATDVM---IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICA 313
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 31.7 bits (73), Expect = 0.37
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
LAG+ ++ GA G G+A+A + GA V++ DI+ E AK+ A+ + AR
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAI 57
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 31.8 bits (73), Expect = 0.38
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 295 ASFGSPLAGRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+ M L+G + G G A+A S GARVV+ D E+ +++ ++
Sbjct: 14 SGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREI 73
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 31.9 bits (71), Expect = 0.38
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 277 SITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 336
+ ++ + NG P + ++ GAG AG G V I + +
Sbjct: 21 TNEDLKLRYLDVLIDNG---LNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANA 77
Query: 337 ER 338
R
Sbjct: 78 NR 79
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 32.0 bits (73), Expect = 0.41
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFD 333
G+GGAG A A A+ GA+V++ +
Sbjct: 133 GSGGAGLAAAVSARDAGAKVILLE 156
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 31.8 bits (73), Expect = 0.43
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 303 GRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
G MF L G G GR +A GA V + + +D+
Sbjct: 3 GSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG 58
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 31.9 bits (73), Expect = 0.44
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 308 LAGAGGAGR--ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDI 356
+ G G G A A + I D+ +R + + +G + ++D
Sbjct: 7 VIGLGRIGTIHAENL-KMIDDAILYAISDVREDRLREMKEK-LGVEKAYKDP 56
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 31.8 bits (73), Expect = 0.44
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 310 GAGGAGRALAFGAKSRGA-RVVIFDID---FERAKSL 342
GAG G A+S GA V++ + A+ +
Sbjct: 203 GAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI 239
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 31.4 bits (72), Expect = 0.44
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDV 346
+ G GRA+A G++V+ I + + DV
Sbjct: 16 ASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDV 55
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 32.0 bits (72), Expect = 0.45
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
G G G A A +G V+ +DID +R K +
Sbjct: 11 GLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR 46
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 31.6 bits (72), Expect = 0.45
Identities = 9/83 (10%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 280 AIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI------FD 333
+IE+ ++ + L R ++ G G G ++ G V + +
Sbjct: 158 SIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTE 217
Query: 334 IDFERAKSLASDVMGAARPFEDI 356
++ + ++ ++ ++ +
Sbjct: 218 VEQTVIEETKTNYYNSSNGYDKL 240
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 31.3 bits (72), Expect = 0.46
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 301 LAGRMFVLAGAGGA--GRALAFGAKSRGARVVIFDIDFERAKSLASD 345
L G++ ++ A G G A A GA VVI D R
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ 66
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 31.5 bits (72), Expect = 0.47
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
L G+ ++ GA G GR +A+ GA VV+ E + + S +
Sbjct: 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL 75
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 31.4 bits (72), Expect = 0.47
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMGAA 350
G++ V AGG G A+ ++ GARV + D L D+ AA
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAA 79
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 31.7 bits (72), Expect = 0.48
Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFD----IDFERAKSLASDVM------GAARPFEDILNF 359
GAG AG A G +V I + F +SL M G + F
Sbjct: 12 GAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQ-GF 70
Query: 360 QPEKGAILANATPLGMHPNTDRVPVSEETLRDYQL---VFDAVYTPRKTRLLKDAEAAGA 416
Q + GA + +D+ +Q+ FD L +A G
Sbjct: 71 QQKFGAKFVRGKEIADFNFSDQFSNGWNWT--WQVPRGNFDK-------TLADEAARQGV 121
Query: 417 IIVSGVE 423
+ V
Sbjct: 122 DVEYEVG 128
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 31.3 bits (72), Expect = 0.48
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
L GR+ ++ GA G G A A + GA VV+ ++
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVS 55
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 31.4 bits (72), Expect = 0.49
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
L ++ + G G G G +A G VI R + A + GA
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT 75
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; structural genomics, PSI-biology; HET:
FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Length = 689
Score = 31.8 bits (71), Expect = 0.53
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP 352
+ + G G A + RGA V ++ D + A+ + + GA P
Sbjct: 260 AATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASGNRQGALYP 313
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 31.0 bits (69), Expect = 0.54
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP 352
+L G G G+ LA + G +V+ E+A++ A++ A
Sbjct: 5 LLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGD 50
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional
regulation, redox poise; HET: ATP; 2.0A {Bacillus
subtilis} PDB: 2vt2_A*
Length = 215
Score = 31.0 bits (70), Expect = 0.56
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 307 VLAGAGGAGRALA--FGAKSRGARVV-IFDID 335
+L G G G A K+ ++ FDI+
Sbjct: 89 ILIGVGNLGTAFLHYNFTKNNNTKISMAFDIN 120
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 31.0 bits (71), Expect = 0.60
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 305 MFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
M L+G A G GRA GA +V D + + + A
Sbjct: 1 MGRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAV 57
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 31.5 bits (72), Expect = 0.61
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 14/85 (16%)
Query: 309 AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILA 368
G +G A + G V + +ER+ S G + QPE L
Sbjct: 11 VGGSISGLTAALMLRDAGVDVDV----YERSPQPLSGF-GTG------IVVQPELVHYLL 59
Query: 369 NATPLGMHPNTDRVPVSEETLRDYQ 393
G+ ++ VP S D
Sbjct: 60 E---QGVELDSISVPSSSMEYVDAL 81
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 31.0 bits (71), Expect = 0.62
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 310 GAGGAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQ 360
+ G GR A+ F GA+V I ER + ++ A +++ +
Sbjct: 14 SSNGIGRATAVLFAR--EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.8 bits (67), Expect = 0.64
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 307 VLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLAS 344
+ GAG G+ +A K+ V + D D L
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR 47
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 30.9 bits (71), Expect = 0.67
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+ ++ ++ G G G+ +A GARVVI E+ + ++
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEI 50
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 31.2 bits (71), Expect = 0.70
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFD 333
G+GGAG + A A GA+V++ +
Sbjct: 133 GSGGAGFSAAISATDSGAKVILIE 156
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 30.9 bits (71), Expect = 0.70
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 305 MFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFED 355
M + GAG G A A RG +++ + + A D+ AA
Sbjct: 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAA-AELG 51
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 30.9 bits (71), Expect = 0.74
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
AG+ ++ G G GRA+A GA V + D+ K +A + GA
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAIGGAF 53
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 31.0 bits (71), Expect = 0.75
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
L+G+ + GA G G A+A A GA V I L + AA
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAA 55
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 30.8 bits (70), Expect = 0.83
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 308 LAGAGGAGRALAFG-AKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGA 365
L GAG G+ A GA +V + + + + + +++ PE A
Sbjct: 15 LIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGC-VIESDWRSVVS-APEVEA 72
Query: 366 ILANATPLGMH 376
++ ATP H
Sbjct: 73 VII-ATPPATH 82
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate,
histidine metabolism, lyase; HET: NAD URO; 1.19A
{Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A*
2v7g_A*
Length = 557
Score = 31.2 bits (70), Expect = 0.84
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 297 FGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK 340
+G L G+ + AG GG G A A GA + + R
Sbjct: 161 YGGSLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRID 204
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 30.6 bits (70), Expect = 0.86
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQ 360
+ G GR A GA V I ER + ++ + + + +
Sbjct: 14 SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 30.6 bits (70), Expect = 0.88
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
L + ++ GA G GRA+A GA VV+ D+ E A+++A+ +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI 56
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus
subtilis}
Length = 552
Score = 30.8 bits (69), Expect = 0.91
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 297 FGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK 340
FG L G + + AG GG G A V+ ++D +R
Sbjct: 157 FGGSLKGTLTLTAGLGGMGGAQPLSVTMNEGVVIAVEVDEKRID 200
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox
sensing, winged helix, themophilus; HET: NAD; 2.16A
{Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB:
1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Length = 211
Score = 30.2 bits (68), Expect = 0.92
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 307 VLAGAGGAGRALA-FGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
+ G G G ALA + + FD+D E+ + + + P +
Sbjct: 84 CIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGV--IEHVDLLPQRVPGRI 141
Query: 365 AILANATP 372
I P
Sbjct: 142 EIALLTVP 149
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 30.8 bits (70), Expect = 0.92
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFER---AKSLASDV 346
G G V+ G G G A K GA V++ + R AK L +D
Sbjct: 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH 261
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 30.6 bits (70), Expect = 0.94
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
L ++ V+ GA G A F A GARV I + + +++ G A
Sbjct: 27 LNAKIAVITGATSGIGLAAAKRFVA--EGARVFITGRRKDVLDAAIAEIGGGA 77
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.4 bits (68), Expect = 0.95
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
G G G++L G VV + + + L
Sbjct: 26 GTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLC 66
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 30.5 bits (70), Expect = 0.98
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
L + ++ GA G GRA GAR+V DI+ + A V
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP 53
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 30.5 bits (69), Expect = 0.98
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 310 GAGGAGRA--LAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED 355
G G + L A+ +V+ + + +LA+ + D
Sbjct: 9 GLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY-RVSATCTD 55
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 30.6 bits (70), Expect = 0.98
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFER---AKSLASDV 346
G G ++ GAG G AK+ GA +VV+ D+ R AK + +D+
Sbjct: 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL 219
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 30.7 bits (70), Expect = 1.00
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 8/70 (11%)
Query: 289 GYKNGTASFGSPLAGRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAK 340
G S MF L+ G GR +A GA V +
Sbjct: 20 GSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELS 79
Query: 341 SLASDVMGAA 350
S+ +++
Sbjct: 80 SVTAELGELG 89
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 30.5 bits (70), Expect = 1.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
GAG AG A A GA V + DI+ ++ + L
Sbjct: 175 GAGTAGYNAARIANGMGATVTVLDINIDKLRQL-DAEFCG 213
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFD 333
V+AG G AG A + A GA V++ +
Sbjct: 45 VVAGYGIAGVAASIEAARAGADVLVLE 71
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 30.5 bits (70), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
G G G A A GA+V I D++ +R + L DV G
Sbjct: 173 GGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL-DDVFGG 211
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 30.3 bits (69), Expect = 1.2
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 310 GAGGAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
GAG F + V I++ E A+ A V G R +
Sbjct: 142 GAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSV 190
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 30.5 bits (70), Expect = 1.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
G G G A A GA+V IFDI+ ER L + G+
Sbjct: 174 GGGVVGTEAAKMAVGLGAQVQIFDINVERLSYL-ETLFGS 212
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFED 355
+ GAG G A ++ +V+ DI + A D+ A+ P E
Sbjct: 6 SIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS-PIEG 54
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 30.2 bits (69), Expect = 1.3
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFER---AKSLASDVMGAAR 351
GS ++G+ ++ GAG G A ++ GA +++ D + R A+ A ++
Sbjct: 160 GSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLE 217
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 8/60 (13%)
Query: 295 ASFGSPLAGRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+S P M G G +A G RV + E ++ ++
Sbjct: 7 SSGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL 66
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 30.2 bits (69), Expect = 1.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFED 355
L GAG G LA A + VV+FDI A D++ P E
Sbjct: 9 TLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTC-PIEG 57
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 30.2 bits (69), Expect = 1.3
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
+ + VLA + G GRA+A GA V I + E K +
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC 66
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein,
winged helix, rossmann fold, NAD+; HET: NAD; 1.50A
{Streptococcus agalactiae serogroup iiiorganism_taxid}
PDB: 3keq_A* 3ket_A*
Length = 212
Score = 29.8 bits (67), Expect = 1.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 307 VLAGAGGAGRALA--FGAKSRGARVV-IFDID 335
+L G G GRAL ++ FD+D
Sbjct: 88 MLVGCGNIGRALLHYRFHDRNKMQISMAFDLD 119
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 30.2 bits (67), Expect = 1.3
Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 32/130 (24%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDID---FERAKSLASDVMGAARPFEDILNFQPEKGAI 366
G G + G RV + +I+ E ++ + + + I
Sbjct: 130 GGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVI-----EGLGVDGV-------NVI 177
Query: 367 LANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 426
+ T + ++ ++ A K R+ + + +
Sbjct: 178 TGDETVI--------------DGLEFDVLMVAALAEPKRRVF---RNIHRYVDTETRIIY 220
Query: 427 RQAIGQFNLF 436
R G +
Sbjct: 221 RTYTGMRAIL 230
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 30.5 bits (69), Expect = 1.4
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 294 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 332
+ F + + G G ++ + G +V +
Sbjct: 151 SPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVH 189
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 30.3 bits (68), Expect = 1.4
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 26/130 (20%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFD-IDFERAK---SLASDVMGAARPFEDIL-------- 357
G G G LA RG RV++ + F R + SL + +L
Sbjct: 14 GGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESL---LPATVHGICAMLGLTDEMKR 70
Query: 358 -NFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQL---VFDAVYTPRKTRLLKDAEA 413
F ++G + YQ+ FD LL+++E
Sbjct: 71 AGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDD-------MLLRNSER 123
Query: 414 AGAIIVSGVE 423
G + E
Sbjct: 124 KGVDVRERHE 133
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.1 bits (67), Expect = 1.4
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDIL 357
G G GR +A G V I D + + A A PF L
Sbjct: 26 GTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWL 73
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+ + G G G A+A +RG V D + + +
Sbjct: 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGL 68
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 30.2 bits (69), Expect = 1.4
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFED 355
+ GAG G +A + V +FDI + A D+
Sbjct: 18 SIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCM-ALIG 66
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 30.2 bits (69), Expect = 1.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFED 355
+ G+G G +A+ A VV+FDI + A D+ +
Sbjct: 8 AVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSM-VMFG 56
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFE 354
L G+G G LA A + VV+FDI + D+ ++ P +
Sbjct: 11 ALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESS-PVD 58
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.0 bits (68), Expect = 1.5
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 22/92 (23%)
Query: 299 SPLAGRM--FVLAGAGGAGR--ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPF 353
P+ R F L G G A + A ++ + DID K+ AR
Sbjct: 7 PPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT--GARGH 64
Query: 354 EDILNFQPEKGAILAN--------ATPLGMHP 377
+ +LA TP G+HP
Sbjct: 65 ASL-------TDMLAQTDADIVILTTPSGLHP 89
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 29.9 bits (68), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 310 GAGGAGRALAFGAKSRGARVVI-FDID---FERAKSL 342
G GG G ++ G K+ GA +I DI+ F +AK +
Sbjct: 199 GLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 235
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFED 355
+ G+G G + + R A VV++D+ + A D+ D
Sbjct: 13 AMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVT-SVVD 61
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 30.0 bits (68), Expect = 1.7
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 308 LAGAGGAGR--ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDI 356
L GAG G A A + +V I D E A+ LA A
Sbjct: 9 LFGAGRIGHVHAANI-AANPDLELVVIADPFIEGAQRLAEAN--GAEAVASP 57
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 29.9 bits (68), Expect = 1.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 310 GAGGAGRALAFGAKSRGA-RVVIFDID---FERAKSL 342
G GG G + G K+ GA R++ F +A L
Sbjct: 199 GLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 235
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 30.1 bits (67), Expect = 1.8
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 275 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 334
+ I D + E+ Y G+ VL G GR + +K G + +
Sbjct: 55 RKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGV 114
Query: 335 DF-----ERAKSLASDVMGAARPFEDILNFQPEKGAI--LANATPLGMHPNTDRVPVSEE 387
D E A+ N + KG I LA A P G+ ++ + +S
Sbjct: 115 DMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNC 174
Query: 388 TLR---DYQLVFDAVYTPRKTRLLKD 410
+ +F ++ R+L+D
Sbjct: 175 VCNLSTNKLALFKEIH-----RVLRD 195
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 29.9 bits (68), Expect = 1.8
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 293 GTASF-----GSPLAG-RMFVLAGAGGAGRALAFGAKSRGARVV 330
TA G G ++ V A AGG G+ +K V+
Sbjct: 149 TTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVI 192
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 29.9 bits (68), Expect = 1.8
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 298 GSPLAGRMFVL-AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
G M + GAG G + A K G + +E K + +GAA
Sbjct: 17 NLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDV----YEAVKEIK--PVGAA 64
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 29.8 bits (68), Expect = 1.8
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+GG G A+A GA V I+ +
Sbjct: 42 SSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ 78
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 28.9 bits (65), Expect = 1.9
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
F++ G RG V + E +G
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD 49
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 29.9 bits (68), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 310 GAGGAGRALAFGAKSRGA-RVVIFDID---FERAKSL 342
G G G + G K GA R++ DI+ F +AK+L
Sbjct: 203 GLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 29.9 bits (68), Expect = 1.9
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 310 GAGGAGRALAFGAKSRGARVVI-FDID---FERAKSL 342
G GG G A+ G K GA +I DI+ F RAK
Sbjct: 198 GLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF 234
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.8 bits (68), Expect = 1.9
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 307 VLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVM 347
VL G+G G +A + VV+FDI A D
Sbjct: 8 VLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTS 49
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 29.6 bits (67), Expect = 2.0
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID-FERAKSLASD---------VMG 348
+ ++ ++ G G G A ++ G + I D + + A+S+ ++ +
Sbjct: 18 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINL 77
Query: 349 AARPFEDILNFQPE----------KGAILANATP------LGMHP 377
E + + E K LA LG+HP
Sbjct: 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHP 122
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 29.7 bits (67), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFD 333
++ GAG AG + AK GA V++ D
Sbjct: 125 LVVGAGSAGFNASLAAKKAGANVILVD 151
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 29.7 bits (67), Expect = 2.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 276 ASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFG---AKSRGARVV 330
++TA AI + G N G R+ +L +GG G F K+ A V
Sbjct: 163 VALTAWS-AINKVGGLNDKNCTGK----RVLILGASGGVG---TFAIQVMKAWDAHVT 212
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.4 bits (67), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGAARPFE 354
VL G G G + AF +G VI D+ +R K A D+ A F
Sbjct: 9 VLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ-AFT 57
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 29.4 bits (67), Expect = 2.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFED 355
+L G G G + A+ +G + I DI ++ K A D+ A PF
Sbjct: 13 ILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL-PFTS 62
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVV 330
+ AGA + + AK G R +
Sbjct: 170 MTAGASQLCKLIIGLAKEEGFRPI 193
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 29.5 bits (67), Expect = 2.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVV 330
VL AGG G A AK GA+V+
Sbjct: 165 VLGAAGGIGTAAIQIAKGMGAKVI 188
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 29.5 bits (67), Expect = 2.2
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQ 360
+ G GR+ A GA+V I + +R + ++ A P E I
Sbjct: 34 SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 29.6 bits (67), Expect = 2.3
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILAN 369
G+G GR+ A S G RV ++DI+ + ++ + + G++ +
Sbjct: 13 GSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENI-------RKEMKSLQQSGSLKGS 65
Query: 370 ATPLGMHPNTDRVPVSEETLRDYQLVFDAVY--TPRKTRLLKDAEAA---GAIIVS 420
+ E + + + V K ++ ++ ++ S
Sbjct: 66 LSAEEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSS 121
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNF 359
+ ++ GA G G +A G + G RVV+ + + + ++M + + ++ +
Sbjct: 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVL 64
Query: 360 Q 360
Sbjct: 65 P 65
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 29.1 bits (66), Expect = 2.4
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFE-----RAKSLASDV 346
+ G G L + R RVV + ++A D+
Sbjct: 36 ASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDI 77
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 29.4 bits (66), Expect = 2.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 332
F G GR +A+ A+ G VI+
Sbjct: 110 GEKMTFATTTDGNHGRGVAWAAQQLGQNAVIY 141
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 29.0 bits (66), Expect = 2.5
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFE----RAKSLASDV 346
G G A A GA+V FD F + DV
Sbjct: 15 AGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDV 55
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 29.0 bits (66), Expect = 2.5
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
L G V G+ G G A+ GARV + +
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW 65
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 29.3 bits (66), Expect = 2.6
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 6/75 (8%)
Query: 306 FVLAGAGGAG-RALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAAR--PFEDILNFQP 361
F G + GA + +F+ D + S E ++
Sbjct: 7 FAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLIT-DA 65
Query: 362 EKGAILANATPLGMH 376
I A
Sbjct: 66 SIDLIAC-AVIPCDR 79
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.1 bits (66), Expect = 2.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
L + ++ GAG G GRA++ GA V D+D A+
Sbjct: 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETV 48
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 29.1 bits (66), Expect = 2.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVV 330
V A G A ++ R++
Sbjct: 150 VNACGSAIGHLFAQLSQILNFRLI 173
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 29.1 bits (66), Expect = 2.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 310 GAGGAGRALAFGAKSRGA-RVVIFDID---FERAKSL 342
G G G A G S GA R++ D++ FE+AK
Sbjct: 200 GLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 236
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 29.0 bits (66), Expect = 2.8
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
A G G A A G + GARV++ DI + +
Sbjct: 17 SARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGV 63
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.4 bits (64), Expect = 2.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
F + G G G ++ G V+ DI+ E+ + AS A
Sbjct: 9 FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA 52
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 29.2 bits (66), Expect = 2.9
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
L G+ ++G G G A+A + GA V + E L + AA+
Sbjct: 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAK 58
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 29.0 bits (66), Expect = 3.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFE 354
VL G G G + AF ++ +VI D+D E+ + D+ A P+
Sbjct: 10 VLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYS 58
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.0 bits (64), Expect = 3.1
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 13/115 (11%)
Query: 310 GAGGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILA 368
G G L+ A SR G V + + + A+ A +++ EK
Sbjct: 9 GGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWT-----KALGADELTVIVNEKDGTQT 63
Query: 369 NATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE---AAGAIIVS 420
D E + +V V + A+IV
Sbjct: 64 EVKSRPKVITKD----PEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVG 114
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 29.2 bits (66), Expect = 3.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVV 330
A G G+A+ A + G R +
Sbjct: 173 QNASNSGVGQAVIQIAAALGLRTI 196
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.0 bits (64), Expect = 3.3
Identities = 24/126 (19%), Positives = 36/126 (28%), Gaps = 13/126 (10%)
Query: 305 MFVL-AGAGGAGRALAFGAKSR--GARVVIFDIDFERAKSLASD---VMGAARPFEDILN 358
M +L GAG AG A K + I E+ V+ RP + N
Sbjct: 1 MKILVIGAGPAGLVFASQLKQARPLWAIDI----VEKNDEQEVLGWGVVLPGRPGQHPAN 56
Query: 359 FQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD-AEAAGAI 417
A + V +E +L ++ V L+D + G
Sbjct: 57 PLSYLDAPERLNP--QFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIA 114
Query: 418 IVSGVE 423
I
Sbjct: 115 IRFESP 120
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 28.9 bits (65), Expect = 3.3
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 310 GAGGAGRALAFG-AKSRGARVV-IFDIDFERAKSLA 343
G G +A KS ++V + ++ +
Sbjct: 12 GLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFG 47
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 29.1 bits (66), Expect = 3.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 276 ASITAIEDAIKERGYKNGTASFGSPLAG-RMFVLAGAGGAGRALAFGAKSRGARVV 330
ITA E + + G + + G + ++ GAGG G AK+ G RV+
Sbjct: 128 TGITAYE-TLFDVF---GISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVI 179
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 28.8 bits (65), Expect = 3.4
Identities = 18/104 (17%), Positives = 27/104 (25%), Gaps = 24/104 (23%)
Query: 295 ASFGSPLAGRMFVL-AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
A+ AG G AG A K G V + E++ L GA
Sbjct: 2 ANVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWDVRL----HEKSSELR--AFGAG--- 52
Query: 354 EDILNFQPEKGAILANAT----PLGMHPNTDRVPVSEETLRDYQ 393
+ N LG + + + T +
Sbjct: 53 ---IYLWH-------NGLRVLEGLGALDDVLQGSHTPPTYETWM 86
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 29.0 bits (66), Expect = 3.4
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 307 VLAGAGGAGRALAF--GAKSRGARVVIFDIDFERAKSLASDVMGAARPFED 355
+ GAG G +A + VV+ DI + A D+ ++ P
Sbjct: 4 TVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESS-PIHG 53
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 28.7 bits (65), Expect = 3.4
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 310 GAGGAGR--ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP 352
A G GR A+ GA ++ DI + + A+ P
Sbjct: 19 AARGQGRSHAVRLAQ--EGADIIAVDICKPIRAGVVDTAIPASTP 61
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 28.7 bits (65), Expect = 3.6
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
L G++ ++ GA G G A+A GA +V DI+ E + A
Sbjct: 32 LKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGY 88
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 29.0 bits (66), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 307 VLAGAGGAGRALAFGA--KSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
+ G G G + AF K +V+ D+D +RA+ A D++ PF
Sbjct: 4 GIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT-PFT 52
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 28.6 bits (65), Expect = 3.7
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFE 354
V+ GAG G + F ++G +V+ D + +A A D F
Sbjct: 10 VVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK-VFA 58
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 28.6 bits (65), Expect = 3.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFE------RAKSLASDVMGAA 350
G+ G GRA+A +RG RV I + E A L +D+
Sbjct: 10 GSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDD 56
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 28.7 bits (65), Expect = 4.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 299 SPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFER---AKSLASDV 346
P++G+ ++ GAG G AK+ GA V++ + R AK + +D
Sbjct: 164 GPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY 215
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 28.6 bits (65), Expect = 4.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFE 354
L GAG G + AF ++G +V+ D++ E+A D+ F
Sbjct: 9 ALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGK-AFA 57
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 28.6 bits (65), Expect = 4.2
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 8/59 (13%)
Query: 299 SPLAGRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
S R L G G A+A GA VV+ E + + G
Sbjct: 3 STGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE 61
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 28.6 bits (65), Expect = 4.2
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF------ 353
L G+ ++ GA G G A+A G++V+I + E+ KSL + +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLAN 71
Query: 354 -EDILNFQPEKGA--ILAN 369
E+ N + IL
Sbjct: 72 KEECSNLISKTSNLDILVC 90
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 29.1 bits (64), Expect = 4.3
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 368 ANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
NA+P + T P + + + Q+ AV P T
Sbjct: 43 GNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATI 81
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 28.7 bits (65), Expect = 4.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFD 333
V+ G G G A+A+ +F+
Sbjct: 21 VVIGGGIIGSAIAYYLAKENKNTALFE 47
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 28.2 bits (63), Expect = 4.3
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 311 AGGAGRALAFGAKSRGARVVIFDID---FERAKSLASDVMGAARPFEDILNFQPEKGAIL 367
G+G+ ++ S+G V DI+ A++ A G + F +
Sbjct: 38 GCGSGK-ISLELASKGYSVTGIDINSEAIRLAETAARS-PGLNQKTGGKAEF------KV 89
Query: 368 ANATPLGMHPNT-DRVPVSE 386
NA+ L H ++ D +
Sbjct: 90 ENASSLSFHDSSFDFAVMQA 109
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 27.8 bits (63), Expect = 4.5
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 11/49 (22%)
Query: 301 LAGRMF----VL---AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 342
L R L AG+G A+ A S G V+ + D E + L
Sbjct: 35 LRLRYPRRGRFLDPFAGSG----AVGLEAASEGWEAVLVEKDPEAVRLL 79
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 28.3 bits (64), Expect = 4.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 307 VLAGAGGAGRALAFGAKSRGARV 329
+ A AGG G L K +GA
Sbjct: 154 LFAAAGGVGLILNQLLKMKGAHT 176
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.7 bits (65), Expect = 4.6
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFER---AKSLASDV 346
AG + G G G A+ GA V++ + A+ + +
Sbjct: 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA 230
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 28.6 bits (65), Expect = 4.6
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 307 VLAGAGGAGRALAF--GAKSRGARVVIFDIDFERAKSLASDVMGAA 350
+ GAG G AF K +V+ D+ + A D+ +
Sbjct: 4 TVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESG 49
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 28.6 bits (65), Expect = 4.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 310 GAGGAGRALAFGAKSRGARVVI-FDID---FERAKSL-ASDV 346
GAG G + AK GA ++I DI E AK L A+ V
Sbjct: 198 GAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV 239
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 28.8 bits (64), Expect = 4.9
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 23/129 (17%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFD-IDFERAK---SLASDVM------GAARPFEDILNF 359
G G AG G V I++ F R + SL M G + N+
Sbjct: 30 GGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDA-QNY 88
Query: 360 QPEKGAILANATPLGMHPNTDRVPVSEETLRDY-----QLVFDAVYTPRKTRLLKDAEAA 414
+ A + P + D+ + FD LL +A +
Sbjct: 89 VKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDK-------LLLDEARSR 141
Query: 415 GAIIVSGVE 423
G +
Sbjct: 142 GITVHEETP 150
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 28.3 bits (64), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 307 VLAGAGGAGRALAF--GAKSRGARVVIFDIDFERAKSLASDVM 347
+ GAG G LAF + +V+ DI ER ++ D+
Sbjct: 11 AVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQ 53
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 28.2 bits (64), Expect = 5.2
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 12/49 (24%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFE------------RAKSLASDV 346
GA G GRA+A GA + I D+ R ++ DV
Sbjct: 15 GANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDV 63
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 28.2 bits (63), Expect = 5.2
Identities = 16/93 (17%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 294 TASFGSPLAGRM-----FVLAGAGGAGR-ALAFGAKSRGARVV-IFDIDFERAKSLASDV 346
+ M F G GAR+ + D A ++
Sbjct: 12 DLGTENLYFQSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV- 70
Query: 347 MGAARPF---EDILNFQPEKGAILANATPLGMH 376
AR E+IL G I++ A
Sbjct: 71 YADARRIATAEEILE-DENIGLIVS-AAVSSER 101
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin
binding, triscatecholate BIND protein, iron transport;
1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A*
2phz_A
Length = 311
Score = 28.2 bits (63), Expect = 5.3
Identities = 8/87 (9%), Positives = 24/87 (27%), Gaps = 13/87 (14%)
Query: 275 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 334
E + + I ++ K+ A G +++ + + + D+
Sbjct: 155 EQDLKETKTKINDKA-KDSKALVIRIRQGNIYI------------YPEQVYFNSTLYGDL 201
Query: 335 DFERAKSLASDVMGAARPFEDILNFQP 361
+ + + E + P
Sbjct: 202 GLKAPNEVKAAKAQELISLEKLSEMNP 228
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 28.3 bits (64), Expect = 5.3
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 344
G A G V D F++ L +
Sbjct: 9 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 43
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 27.6 bits (62), Expect = 5.3
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
+++ G+ AG L + G +V+ D E+ + L +
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG 49
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 28.4 bits (64), Expect = 5.5
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 310 GAGGAGR---ALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPF---EDILNFQPE 362
G G A R A S + + A+ A V G F E++L
Sbjct: 25 GCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-GNPAVFDSYEELLE-SGL 82
Query: 363 KGAILANATPLGMHP 377
A+ P+ ++
Sbjct: 83 VDAV-DLTLPVELNL 96
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 28.2 bits (64), Expect = 5.6
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
L G++ ++ GA G G+A+A RGA+V+ A++++ + +
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGM 60
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 27.9 bits (63), Expect = 5.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
L GR ++ GA GG G A+A ++GA V + ++ K +A+D+ F
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVF 78
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 28.2 bits (64), Expect = 5.8
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPF 353
+ GAG G + AF R +V+ D+ E+A A D+ PF
Sbjct: 11 AIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGL-PF 58
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 28.2 bits (64), Expect = 5.9
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGAARPFE 354
GAG G AF + + DI + A A D+ AA
Sbjct: 4 GFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA-AGI 52
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 27.8 bits (63), Expect = 6.0
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
G+ G G + S GA V + + +
Sbjct: 17 GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW 53
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.4 bits (64), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFD 333
+ GAG AG A A A +RG +V +FD
Sbjct: 377 AVVGAGPAGLAFAINAAARGHQVTLFD 403
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural
genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Length = 113
Score = 26.8 bits (59), Expect = 6.3
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRA------LAFGAK-----SRGARVVIFDIDFERAK 340
+ +S PL+ + G + G K ++ + + + E+
Sbjct: 2 SSGSSGDKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMN 61
Query: 341 S 341
Sbjct: 62 K 62
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 27.8 bits (63), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGAARPF 353
+ G+G G A A+ G VV+ D+D + A++ A D++ A PF
Sbjct: 4 GIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT-PF 51
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 27.2 bits (61), Expect = 6.6
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 305 MFVL-AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS--DVMG 348
+++ G G G +A A S G VV+ D + L S
Sbjct: 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFT 66
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.9 bits (63), Expect = 6.7
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 301 LAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
L G+ V G G+A+A + GA V+I E ++
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQ 57
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 27.9 bits (63), Expect = 6.8
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
G G G A + GA V + A +
Sbjct: 22 GNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVT 55
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 27.9 bits (61), Expect = 6.8
Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 8/115 (6%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILAN 369
GAG AG L + V ++ D + + ++ + E +
Sbjct: 29 GAGTAGLHLGLFLRQHDVDVTVYT-DRKPDEYSGLRLLNTVAHNAVTVQR--EVALDVNE 85
Query: 370 ATPLGMHPNTDRVPVSEETLRDYQLVFDAV-----YTPRKTRLLKDAEAAGAIIV 419
V + A Y + L++ EA G
Sbjct: 86 WPSEEFGYFGHYYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARGGKFC 140
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 28.4 bits (63), Expect = 7.0
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 307 VL-AGAGGAGRALAFGAKSRGARVVIFDIDFE 337
VL GAG AG A A A GARV++ D E
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLDERAE 162
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 28.0 bits (63), Expect = 7.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 301 LAGRMFVLAGA-GGAG----RALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348
A R V+ GA G G R LA RGA V++ D + ++ A + G
Sbjct: 14 FAQRTVVITGANSGLGAVTARELA----RRGATVIMAVRDTRKGEAAARTMAG 62
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.9 bits (63), Expect = 7.0
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 345
G G A+ G K ++I ER+K +A
Sbjct: 10 GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ 45
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 28.0 bits (63), Expect = 7.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFER---AKSLASDV 346
G ++ GAG G AK+ GA +VI DID R AK + +V
Sbjct: 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEV 227
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 27.7 bits (62), Expect = 7.3
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 310 GAGG-AGRALAFG-AKSRGARVV-IFDIDFERAKSLASDVMGAARPFED 355
G G L + + R+V D D ERA+ + + ++
Sbjct: 12 GIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF-ISDIPVLDN 59
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 27.8 bits (62), Expect = 7.6
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 33/155 (21%)
Query: 297 FGSPLAGRMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFERAKSLASDVMGA 349
F + + G L ++LA A G + D + +
Sbjct: 59 FINAMTGGGGKLTYEIN--KSLARAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPN 116
Query: 350 ARPFEDILNFQPEKGAI----LANATPLGMHPNTDRVPVSEETLRDYQLVFDAV------ 399
F ++ + A + A L +H N + V E R + +
Sbjct: 117 GLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSR 176
Query: 400 -------------YTPRKTRLLKDAEAAGAIIVSG 421
+ L +A AA + + G
Sbjct: 177 VSVPVIVKEVGFGMSKASAGKLYEAGAAA-VDIGG 210
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 27.9 bits (63), Expect = 7.8
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVM 347
+ G G G A A + + + D+ ++ K D+
Sbjct: 23 TVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQ 65
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 27.5 bits (62), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 298 GSPLAGRMFVLAG--------AGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
GS +AG+ L G A G GR+ A + GA ++ DI + S+
Sbjct: 3 GSMVAGQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVT 56
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 27.6 bits (62), Expect = 8.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVV 330
A AGG G AK+ GA+++
Sbjct: 146 FHAAAGGVGLIACQWAKALGAKLI 169
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 27.6 bits (62), Expect = 8.2
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 302 AGRMFVLAGA-GGAGR-----ALAFG-AKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
A R+F A GG G AF ++ V+ DI + +
Sbjct: 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGD--LDMYLSGNTHSQ 60
Query: 355 DILN 358
D+ +
Sbjct: 61 DLAD 64
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 27.5 bits (62), Expect = 8.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 307 VLAGAGGAGRALAFGAKSRGARV 329
A AGG G AK+ GA++
Sbjct: 146 FHAAAGGVGSLACQWAKALGAKL 168
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 28.1 bits (63), Expect = 8.4
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 307 VLAGAGGAG-RALAFGAKSRGARVVI 331
V+ GAGGAG RA AFG G
Sbjct: 22 VVVGAGGAGLRA-AFGLSEAGFNTAC 46
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.4 bits (60), Expect = 8.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 310 GAGGAGRALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAA 350
GAG LA +G R+V ++ E A+ LA V
Sbjct: 17 GAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEY 58
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 27.5 bits (62), Expect = 8.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 310 GAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
GA G G A A ++G RV + D +R ++LA+++ A P
Sbjct: 12 GASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-EGALPLP 56
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 27.8 bits (63), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 310 GAGGAGRALAFGAKSRGARVVIFD 333
GAG AG A A RG RV++ D
Sbjct: 34 GAGAAGMMCAIEAGKRGRRVLVID 57
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 27.6 bits (62), Expect = 9.3
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 307 VLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPF 353
+ G G G A ++G R+V+ D+ E K D+ P
Sbjct: 18 TVVGGGELGIACTLAISAKGIADRLVLLDLS-EGTKGATMDLEIFNLPN 65
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 27.6 bits (62), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVV 330
+ A AGG G + A+ GA V+
Sbjct: 151 IHAAAGGMGHIMVPWARHLGATVI 174
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 27.2 bits (61), Expect = 9.7
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
+A GG G + R + + E +LA
Sbjct: 10 FVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA 46
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 27.5 bits (62), Expect = 9.7
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
L GR+ ++ G G G +A G G VV+ + E A A +
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,230,799
Number of extensions: 466427
Number of successful extensions: 2250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 341
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)