Citrus Sinensis ID: 012867
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9P4 | 541 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.889 | 0.746 | 0.693 | 1e-171 | |
| P52410 | 473 | 3-oxoacyl-[acyl-carrier-p | no | no | 0.632 | 0.606 | 0.569 | 5e-96 | |
| P23902 | 462 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.610 | 0.599 | 0.571 | 2e-92 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.607 | 0.666 | 0.467 | 3e-67 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.607 | 0.665 | 0.471 | 3e-66 | |
| Q83E37 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.610 | 0.669 | 0.455 | 1e-65 | |
| P73283 | 416 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.610 | 0.665 | 0.437 | 8e-63 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.607 | 0.668 | 0.441 | 1e-60 | |
| P0AAI8 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.601 | 0.661 | 0.432 | 1e-57 | |
| P0AAI5 | 413 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.601 | 0.661 | 0.432 | 1e-57 |
| >sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 601 bits (1550), Expect = e-171, Method: Compositional matrix adjust.
Identities = 305/440 (69%), Positives = 343/440 (77%), Gaps = 36/440 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +R LS KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDSRQAVALQSGGRSRRRRQLS---------KCS 52
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
V SGS+ SIQ+L+ SCL F PC Y + +N SS FGSN
Sbjct: 53 VA------------SGSA-SIQALVTSCLDFGPCTHYNN---------NNALSSLFGSN- 89
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 90 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGH 145
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 146 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 205
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T++VM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 206 TAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 265
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 266 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 325
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 326 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 385
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEPHPDG
Sbjct: 386 FLGGSFTCDAYHMTEPHPDG 405
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Essential protein that catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-16 and C-16 to unsaturated C-18 fatty acids. Confers resistance to low temperatures by maintaining chloroplast membranes integrity. Involved in the regulation of fatty acids ratios during seed metabolism. Required for embryo development, especially at the transition from the globular to the heart stage. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2 | Back alignment and function description |
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Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 217/288 (75%), Gaps = 1/288 (0%)
Query: 154 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAA 213
V+ K+ +KRVV+TGMGLVS G++ D +Y LL G SGIS I+ FD + FPT+
Sbjct: 50 VSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109
Query: 214 EIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
+I+ FS++G++ K +R+D + Y + AGKKAL + D +N +DK K GVL+G+G+
Sbjct: 110 QIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGM 169
Query: 274 GGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG+ VF + ++ L +++++PF +P+A TNMGSA+LA+DLG MGPNYSISTACATSN+
Sbjct: 170 GGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNY 229
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392
C AANHI RGEA++M+ GG++AA+IPIGLGGFVACRALSQRN+DP ASRPWD RDG
Sbjct: 230 CFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDG 289
Query: 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
FVMGEGAGVL++E LEHA KRGA I AE+ GG+ DA+HMT+P DG
Sbjct: 290 FVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADG 337
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|P23902|KASC1_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1 | Back alignment and function description |
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Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/280 (57%), Positives = 211/280 (75%), Gaps = 3/280 (1%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
+KRVV+TGMGL S G + D FY+ LL G SG+ I+ FD +SFPT+ A +I+ FS++G+
Sbjct: 47 RKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAGQIRGFSSEGY 106
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K +R+D + Y + +GKKAL G+ D +LD + GVL+G+G+GG+ VF D
Sbjct: 107 IDGKNDRRLDDCIRYCILSGKKALESAGLGAGSDAHVKLDVGRAGVLVGTGMGGLSVFSD 166
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
++ L Y+K++PF +P+A TNMGSA+LA+D+G+MGPNYSISTACATSN+C AANH
Sbjct: 167 GVQNLIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYCFYAAANH 226
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RGEA++++ GG++AA+IPIGLGGFVACRALSQRN+DP A RPWD RDGFVMGEGAG
Sbjct: 227 IRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGFVMGEGAG 286
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
VL++E LEHA KR A I AE+ GG+ DAYHMT+P DG
Sbjct: 287 VLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRADG 326
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
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Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/280 (46%), Positives = 187/280 (66%), Gaps = 4/280 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+G+GAG
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+++LEE EHAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDG 277
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
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Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/280 (47%), Positives = 182/280 (65%), Gaps = 4/280 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LLEG SGI IE FD T+F T+ A +K F
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNIEHFDATNFSTRFAGLVKDFDCT 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ + E + ++ GV IGSG+GG+ +
Sbjct: 61 EYMSKKDARKMDLFIQYGIAAGIQALDDSGLE---ITEENAARVGVAIGSGIGGLDLIEA 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD RDGFV+G+GAG
Sbjct: 178 IAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
V++LEE EHAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 VMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDG 277
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/281 (45%), Positives = 181/281 (64%), Gaps = 4/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M+++RVV+TG+G+VSPLG++ + LL G SG+ I FD +SFPT+IAAE++ F
Sbjct: 1 MEKRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPA 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++ D F+ + + + ++A D G+ +NE + + GV IGSG+GGM
Sbjct: 61 LVLDLKSIRKTDVFVQFAMESARQAWEDSGLE---INETNAPRVGVAIGSGIGGMPWIEK 117
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL S +K++PF +P A NM S M+++ GPN SI TAC T I +AA
Sbjct: 118 NYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I +A+ M+ GG++ A P+G+GGF A RALS RN++P KASRPWD RDGFV+GEGA
Sbjct: 178 IAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAA 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+++EELEHAKKR A IYAE G + DAYHMT P P+ +
Sbjct: 238 CVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAE 278
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P73283|FABF_SYNY3 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 178/281 (63%), Gaps = 4/281 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 239
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
G+L+LEELE A RGAKIY E G + T DAYH+T P PDG
Sbjct: 240 GILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDG 280
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/281 (44%), Positives = 178/281 (63%), Gaps = 5/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M +KRVVVTG+G +SPLG++ D +NN + GVSGI I D +P K+AAE+K F+ +
Sbjct: 1 MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD+F Y + A K A+ D + ++ +E+ + GV +GSG+GG++
Sbjct: 61 DYMDKKEARKMDRFTQYAVVAAKMAVEDADL--NITDEI-APRVGVWVGSGIGGLETLES 117
Query: 282 AIEA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
E L ++++PF VP +M + +++ LG G N TACAT I +A
Sbjct: 118 QFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKV 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG+A+VM+ GG++A + + GF A +ALS N DP ASRP+D NRDGFVMGEGAG
Sbjct: 178 IQRGDADVMVTGGTEAPLTRMSFAGFSANKALST-NPDPKTASRPFDKNRDGFVMGEGAG 236
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+++LEELEHA RGAKIY E G T DAYH+T P DG+
Sbjct: 237 IIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGE 277
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P0AAI8|FABF_SHIFL 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 173/275 (62%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 119 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+
Sbjct: 179 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 238
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
L+LEE EHAKKRGAKIYAE G +SDAYHMT P
Sbjct: 239 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Shigella flexneri (taxid: 623) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P0AAI5|FABF_ECOLI 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 173/275 (62%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 119 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+
Sbjct: 179 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 238
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
L+LEE EHAKKRGAKIYAE G +SDAYHMT P
Sbjct: 239 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | ||||||
| 300507129 | 576 | KASII [Gossypium hirsutum] | 0.960 | 0.756 | 0.763 | 0.0 | |
| 225444641 | 555 | PREDICTED: 3-oxoacyl-[acyl-carrier-prote | 0.911 | 0.745 | 0.748 | 0.0 | |
| 346995771 | 573 | beta-ketoacyl-ACP synthase II [Jatropha | 0.922 | 0.731 | 0.720 | 0.0 | |
| 255550355 | 554 | 46 kDa ketoavyl-ACP synthase [Ricinus co | 0.920 | 0.754 | 0.720 | 1e-173 | |
| 1698690 | 540 | beta-ketoacyl-ACP synthase II [Cuphea wr | 0.865 | 0.727 | 0.742 | 1e-172 | |
| 297738522 | 517 | unnamed protein product [Vitis vinifera] | 0.832 | 0.731 | 0.717 | 1e-172 | |
| 297842241 | 543 | hypothetical protein ARALYDRAFT_476635 [ | 0.894 | 0.747 | 0.695 | 1e-171 | |
| 210110425 | 548 | beta-ketoacyl-ACP synthase II-1 [Arachis | 0.900 | 0.746 | 0.715 | 1e-171 | |
| 297742964 | 546 | unnamed protein product [Vitis vinifera] | 0.885 | 0.736 | 0.716 | 1e-170 | |
| 19698877 | 541 | putative 3-ketoacyl-ACP synthase [Arabid | 0.889 | 0.746 | 0.693 | 1e-169 |
| >gi|300507129|gb|ADK23940.1| KASII [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/444 (76%), Positives = 365/444 (82%), Gaps = 8/444 (1%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRK-LSAKC 59
M +S S SPLCTWLVAACMS T G P ++ R G A RRK L ++C
Sbjct: 1 MMASSSLASPLCTWLVAACMSVTYGKDQSRSPLFNSSASASSNRLGRWARNRRKALLSQC 60
Query: 60 GVGGEVVNGS--LVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNG-FSSFF 116
GG N L+SSF GS+ IQ LMASCL FEPC++YYSS + FFG NG FSSFF
Sbjct: 61 CGGGATPNKDVGLISSFRGST--IQGLMASCLAFEPCDDYYSSKNG-SFFGQNGSFSSFF 117
Query: 117 GSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVS 176
GS N NR Q+RL R SG+AMA+AVQP E+TTKKKP KQ+RVVVTGMG+V+
Sbjct: 118 GSKNVPFNKNREQKRLN-RRAHHSGQAMAIAVQPTREITTKKKPPTKQRRVVVTGMGVVT 176
Query: 177 PLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFM 236
PLGHEPDVFYNNLLEGVSGISEIETFDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFM
Sbjct: 177 PLGHEPDVFYNNLLEGVSGISEIETFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFM 236
Query: 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPF 296
LY LTAGKKAL DGG+ EDVM ELDK+KCG LIGS +GGMKVF DAIEALRISY+KMNPF
Sbjct: 237 LYSLTAGKKALQDGGVNEDVMEELDKTKCGALIGSAMGGMKVFNDAIEALRISYRKMNPF 296
Query: 297 CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDA
Sbjct: 297 CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDA 356
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
A+IPIGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAK+RGA
Sbjct: 357 AIIPIGLGGFVACRALSQRNNDPTKASRPWDANRDGFVMGEGAGVLLLEELEHAKRRGAT 416
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDG 440
IYAEF GGSFT DAYHMTEPHPDG
Sbjct: 417 IYAEFLGGSFTCDAYHMTEPHPDG 440
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444641|ref|XP_002276214.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/434 (74%), Positives = 364/434 (83%), Gaps = 20/434 (4%)
Query: 9 SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNG 68
SPLCTWLVAACMS T + +P S+++ R G +RR++ A+C + G
Sbjct: 4 SPLCTWLVAACMSVTADNEFAPKP-SMVQCSKRLSRWG----KRRRVLAQCS---DFARG 55
Query: 69 SLVSSFSGSSHSIQSLMASCLPFEPCNEYYSS--VSSLGFFGDNGFSSFFGSNNSTATLN 126
+SS SIQ L++SCL FEPC++Y SS + FFGDN SS FGS + LN
Sbjct: 56 GSISS------SIQGLVSSCLAFEPCDQYCSSKGLPYSAFFGDNALSSVFGSK--SLPLN 107
Query: 127 RRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFY 186
RRQRR NR + SGE MAVAVQP +EVTTKKKP +Q+RVVVTGMG++SP+GHEPD FY
Sbjct: 108 RRQRRT--NRGSHSGETMAVAVQPAKEVTTKKKPLTEQRRVVVTGMGVMSPIGHEPDSFY 165
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKA 246
NNLLEGVSGISEIE+FDC+ FPT+IA EIKSFSTDGW+APKLSKRMDKFMLY+LTAGKKA
Sbjct: 166 NNLLEGVSGISEIESFDCSHFPTRIAGEIKSFSTDGWIAPKLSKRMDKFMLYMLTAGKKA 225
Query: 247 LADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306
LADGGITEDV +ELDKS+CGVLIGS +GG+KVF DAIEALR+SY+KMNPFCVPFATTNMG
Sbjct: 226 LADGGITEDVTDELDKSRCGVLIGSAMGGIKVFNDAIEALRVSYRKMNPFCVPFATTNMG 285
Query: 307 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGF 366
SAMLAMDLGWMGPNYSISTACATSNFCILNA+NHIIRGEA++MLCGGSDAA+IPIGLGGF
Sbjct: 286 SAMLAMDLGWMGPNYSISTACATSNFCILNASNHIIRGEADMMLCGGSDAAIIPIGLGGF 345
Query: 367 VACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF 426
VACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF GGSF
Sbjct: 346 VACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFLGGSF 405
Query: 427 TSDAYHMTEPHPDG 440
T DAYHMTEPHPDG
Sbjct: 406 TCDAYHMTEPHPDG 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|346995771|gb|ABJ90469.2| beta-ketoacyl-ACP synthase II [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/458 (72%), Positives = 364/458 (79%), Gaps = 39/458 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRD---PH-----QPPSVLRRYTNNKREGLSAARR 52
M S SF SPLCTWLVAACMS TC + PH QP + L R+ +R+ L A
Sbjct: 1 MMGSASFASPLCTWLVAACMSVTCAKENRTAPHAFHSSQPSNRLSRWAR-RRKTLHAQYN 59
Query: 53 RKLSAKCGV----------GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVS 102
S E ++ SLVS+ GSS Q LM+SCL FEPC++YYSS
Sbjct: 60 SDSSNSIAAGGGGGGGGGYSTEFLSNSLVSTLCGSS--FQGLMSSCLAFEPCSQYYSS-- 115
Query: 103 SLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHM 162
NG F S N LNR+QRRL NR+ SGEAMA+AVQP++EV TKKKP
Sbjct: 116 -------NGL---FRSRN----LNRKQRRL--NRLALSGEAMAIAVQPEKEVATKKKPAT 159
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
KQ+RVVVTGMG+VSPLGHEPDVFYNNLLEGVSGIS+IE F+C FPT+IA EIKSFSTDG
Sbjct: 160 KQRRVVVTGMGVVSPLGHEPDVFYNNLLEGVSGISQIEAFECAQFPTRIAGEIKSFSTDG 219
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
W+APKLSKRMDKFMLY+LTAGKKALADGGITED+M+ELDK+KCGVLIGS +GGMKVF DA
Sbjct: 220 WIAPKLSKRMDKFMLYMLTAGKKALADGGITEDIMDELDKAKCGVLIGSAMGGMKVFNDA 279
Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
IEALR+SY+KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII
Sbjct: 280 IEALRVSYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 339
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
RGEA++MLCGGSDAA+IPIGLGGFVACRALSQRN+DP KASRPWD+NRDGFVMGEGAGVL
Sbjct: 340 RGEADIMLCGGSDAAIIPIGLGGFVACRALSQRNDDPAKASRPWDMNRDGFVMGEGAGVL 399
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
LLEELEHAKKRGA IYAEF GGSFT DAYHMTEP P G
Sbjct: 400 LLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPRPGG 437
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550355|ref|XP_002516228.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] gi|223544714|gb|EEF46230.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 317/440 (72%), Positives = 351/440 (79%), Gaps = 22/440 (5%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
M S S +SPLCTWLVAACMS TC + H + T S RRR K
Sbjct: 1 MMGSASLSSPLCTWLVAACMSVTCSKENRH---AFFSSSTPGTTSSHSRTRRRP---KYN 54
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
+ S +S S S S Q LM+SCL FEPC+ YYSS G F +
Sbjct: 55 SISTPASQSFFNSLSSSGSSFQQLMSSCLAFEPCSHYYSSN---GLFPN----------- 100
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
T L +R RL +R+ RSGEAMAVAVQP++EV T KKP MKQ+RVVVTGMG+VSPLGH
Sbjct: 101 -TPLLPKRHPRLH-HRLPRSGEAMAVAVQPEKEVATNKKPLMKQRRVVVTGMGVVSPLGH 158
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+ DV+YNNLL+G SGIS+I++FDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLY+L
Sbjct: 159 DIDVYYNNLLDGSSGISQIDSFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYML 218
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGGITED+M+ELDK++CGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPF
Sbjct: 219 TAGKKALADGGITEDMMDELDKARCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPF 278
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDAA+IP
Sbjct: 279 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADIMLCGGSDAAIIP 338
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRN+DPTKASRPWD+NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 339 IGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAE 398
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEP PDG
Sbjct: 399 FLGGSFTCDAYHMTEPRPDG 418
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1698690|gb|AAB37271.1| beta-ketoacyl-ACP synthase II [Cuphea wrightii] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/431 (74%), Positives = 351/431 (81%), Gaps = 38/431 (8%)
Query: 10 PLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGS 69
P CTWLVA+CMS T DP P ++R+ KR
Sbjct: 11 PFCTWLVASCMS-TSFDNDPRSPS--VKRFPRRKR------------------------- 42
Query: 70 LVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129
V S GS+ Q L+ASC+ +PC++Y SS +SL F GDNGF+S FGS + NR
Sbjct: 43 -VLSQRGST--FQCLVASCI--DPCDQYRSS-ASLSFLGDNGFASLFGSKPFMS--NRGH 94
Query: 130 RRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNL 189
RRLR R + SGEAMAVA+QP +E TKKKP +KQ+RVVVTGMG+V+PLGHEPDVFYNNL
Sbjct: 95 RRLR--RASHSGEAMAVALQPAQEAGTKKKPVIKQRRVVVTGMGVVTPLGHEPDVFYNNL 152
Query: 190 LEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD 249
L+GVSGISEIETFDCT FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD
Sbjct: 153 LDGVSGISEIETFDCTQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD 212
Query: 250 GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309
GGIT++VM ELDK KCGVLIGSG+GGMKVF DAIEALR+SYKKMNPFCVPFATTNMGSAM
Sbjct: 213 GGITDEVMKELDKRKCGVLIGSGMGGMKVFNDAIEALRVSYKKMNPFCVPFATTNMGSAM 272
Query: 310 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVAC 369
LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDA +IPIGLGGFVAC
Sbjct: 273 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDAVIIPIGLGGFVAC 332
Query: 370 RALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
RALSQRN+DPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF GGSFT D
Sbjct: 333 RALSQRNSDPTKASRPWDSNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCD 392
Query: 430 AYHMTEPHPDG 440
AYHMTEPHP+G
Sbjct: 393 AYHMTEPHPEG 403
|
Source: Cuphea wrightii Species: Cuphea wrightii Genus: Cuphea Family: Lythraceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738522|emb|CBI27767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 310/432 (71%), Positives = 337/432 (78%), Gaps = 54/432 (12%)
Query: 9 SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNG 68
SPLCTWLVAACMS T + +P V +KR RRR L
Sbjct: 4 SPLCTWLVAACMSVTADNEFAPKPSMV----QCSKRLSRWGKRRRGLP------------ 47
Query: 69 SLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRR 128
YS+ FFGDN SS FGS + LNRR
Sbjct: 48 -----------------------------YSA-----FFGDNALSSVFGSK--SLPLNRR 71
Query: 129 QRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNN 188
QRR NR + SGE MAVAVQP +EVTTKKKP +Q+RVVVTGMG++SP+GHEPD FYNN
Sbjct: 72 QRRT--NRGSHSGETMAVAVQPAKEVTTKKKPLTEQRRVVVTGMGVMSPIGHEPDSFYNN 129
Query: 189 LLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALA 248
LLEGVSGISEIE+FDC+ FPT+IA EIKSFSTDGW+APKLSKRMDKFMLY+LTAGKKALA
Sbjct: 130 LLEGVSGISEIESFDCSHFPTRIAGEIKSFSTDGWIAPKLSKRMDKFMLYMLTAGKKALA 189
Query: 249 DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308
DGGITEDV +ELDKS+CGVLIGS +GG+KVF DAIEALR+SY+KMNPFCVPFATTNMGSA
Sbjct: 190 DGGITEDVTDELDKSRCGVLIGSAMGGIKVFNDAIEALRVSYRKMNPFCVPFATTNMGSA 249
Query: 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA 368
MLAMDLGWMGPNYSISTACATSNFCILNA+NHIIRGEA++MLCGGSDAA+IPIGLGGFVA
Sbjct: 250 MLAMDLGWMGPNYSISTACATSNFCILNASNHIIRGEADMMLCGGSDAAIIPIGLGGFVA 309
Query: 369 CRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS 428
CRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF GGSFT
Sbjct: 310 CRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFLGGSFTC 369
Query: 429 DAYHMTEPHPDG 440
DAYHMTEPHPDG
Sbjct: 370 DAYHMTEPHPDG 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842241|ref|XP_002889002.1| hypothetical protein ARALYDRAFT_476635 [Arabidopsis lyrata subsp. lyrata] gi|297334843|gb|EFH65261.1| hypothetical protein ARALYDRAFT_476635 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 306/440 (69%), Positives = 347/440 (78%), Gaps = 34/440 (7%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +RRR+ +KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDTRQAVAL---------QSAGRSRRRRQLSKC- 51
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
SS SGS+ SIQ+L+ SCL F PC Y ++ ++ SS FGSN
Sbjct: 52 -----------SSASGSA-SIQALVTSCLDFGPCTHYNNNNNN-------ALSSLFGSN- 91
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 92 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAMVNKKPPTEQRRVVVTGMGVETSLGH 147
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 148 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 207
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T+DVM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 208 TAGKKALADGGVTDDVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 267
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 268 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 327
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 328 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 387
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEPHPDG
Sbjct: 388 FLGGSFTCDAYHMTEPHPDG 407
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|210110425|gb|ACJ07142.1| beta-ketoacyl-ACP synthase II-1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 314/439 (71%), Positives = 350/439 (79%), Gaps = 30/439 (6%)
Query: 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGV 61
+++ S SPLCTWLVAACMS TC + P + LR ++R +L
Sbjct: 4 SAASSMASPLCTWLVAACMSVTCHADRAGTPKAALRSSKRSRRTKALPPNTSQL------ 57
Query: 62 GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNS 121
N L+SS GSS IQ L++S FEPC++Y ++ N FSS F S
Sbjct: 58 -----NMRLISSLYGSS--IQGLISS---FEPCDDYCNT--------HNAFSSLFRST-- 97
Query: 122 TATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHE 181
T NRR RL N++ SG+ MAVAV+P EVTT KKP KQ+RVVVTG+G+V+PLGHE
Sbjct: 98 --TPNRRHTRL--NKLAHSGKTMAVAVEPAHEVTTTKKPPTKQRRVVVTGLGVVTPLGHE 153
Query: 182 PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241
PDV+YNNLL+GVSGISEIETFDC +PT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLT
Sbjct: 154 PDVYYNNLLDGVSGISEIETFDCAEYPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLT 213
Query: 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFA 301
AGKKAL DGGITEDVM+EL+K KCGVLIGS +GGMKVF DAIEALR+SYKKMNPFCVPFA
Sbjct: 214 AGKKALVDGGITEDVMDELNKEKCGVLIGSAMGGMKVFNDAIEALRVSYKKMNPFCVPFA 273
Query: 302 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361
TTNMGSA+LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA+VMLCGGSDAA+IPI
Sbjct: 274 TTNMGSAILAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPI 333
Query: 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF 421
GLGGFVACRALSQRN DPTKASRPWDINRDGFVMGEGAGVLLLE+LEHAKKRGA IYAEF
Sbjct: 334 GLGGFVACRALSQRNTDPTKASRPWDINRDGFVMGEGAGVLLLEDLEHAKKRGATIYAEF 393
Query: 422 RGGSFTSDAYHMTEPHPDG 440
GGSFT DAYH+TEP PDG
Sbjct: 394 LGGSFTCDAYHVTEPRPDG 412
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742964|emb|CBI35831.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 321/448 (71%), Positives = 348/448 (77%), Gaps = 46/448 (10%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDP-----HQPPSVLRRYTNNKREGLSAARRRKL 55
MA+S S SPLCTWLVAACMS C P Q P L R
Sbjct: 1 MAAS-SVASPLCTWLVAACMSVACEKDHPLKSSMFQTPKRLSR----------------- 42
Query: 56 SAKCGVGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSL---GFFGDNGF 112
+SSF GSS I +LM+SCL FEPC Y SS FFGDNGF
Sbjct: 43 -------------GWISSFYGSS--IHNLMSSCLAFEPCEAYSSSKGLSSSLAFFGDNGF 87
Query: 113 SSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGM 172
S FGS S +N RQR R+NR S + MAVAV+P EVT KKKP KQ+RVVVTGM
Sbjct: 88 -SLFGSKPS--PMNHRQR--RMNRAAHSDKNMAVAVKPAAEVTAKKKPLTKQRRVVVTGM 142
Query: 173 GLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRM 232
G+V+P+GH+ DVFYNNLLEGVSGISEIE FDC FPT+IA EIKSFSTDGWVAPKLSKR
Sbjct: 143 GVVTPVGHDLDVFYNNLLEGVSGISEIEAFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRA 202
Query: 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKK 292
DKFMLY+LTAGKKALADGG+TEDVM+ELDK++CGVLIGS +GGMKVF DAIEALRISY+K
Sbjct: 203 DKFMLYMLTAGKKALADGGVTEDVMSELDKARCGVLIGSAMGGMKVFNDAIEALRISYRK 262
Query: 293 MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCG 352
MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE ++MLCG
Sbjct: 263 MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGETDMMLCG 322
Query: 353 GSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKK 412
GSDAA+IPIGLGGFVACRALSQRN+DP KASRPWDINRDGFVMGEGAGVLLLEELEHAK+
Sbjct: 323 GSDAAIIPIGLGGFVACRALSQRNSDPAKASRPWDINRDGFVMGEGAGVLLLEELEHAKR 382
Query: 413 RGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
RGA IYAEF GGSFT DAYHMTEPHP+G
Sbjct: 383 RGANIYAEFLGGSFTCDAYHMTEPHPEG 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19698877|gb|AAL91174.1| putative 3-ketoacyl-ACP synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 305/440 (69%), Positives = 343/440 (77%), Gaps = 36/440 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +R LS KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDSRQAVALQSGGRSRRRRQLS---------KCS 52
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
V SGS+ SIQ+L+ SCL F PC Y + +N SS FGSN
Sbjct: 53 VA------------SGSA-SIQALVTSCLDFGPCTHYNN---------NNALSSLFGSN- 89
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 90 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGH 145
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 146 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 205
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T++VM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 206 TAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 265
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 266 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 325
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 326 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 385
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEPHPDG
Sbjct: 386 FLGGSFTCDAYHMTEPHPDG 405
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | ||||||
| TAIR|locus:2027252 | 541 | FAB1 "fatty acid biosynthesis | 0.660 | 0.554 | 0.794 | 1.9e-138 | |
| UNIPROTKB|Q9KQH9 | 414 | fabF "3-oxoacyl-[acyl-carrier- | 0.607 | 0.666 | 0.439 | 4.2e-56 | |
| TIGR_CMR|VC_2019 | 414 | VC_2019 "3-oxoacyl-(acyl-carri | 0.607 | 0.666 | 0.439 | 4.2e-56 | |
| TIGR_CMR|CBU_0497 | 414 | CBU_0497 "3-oxoacyl-acyl carri | 0.610 | 0.669 | 0.427 | 3.7e-55 | |
| TIGR_CMR|CHY_1445 | 412 | CHY_1445 "3-oxoacyl-(acyl-carr | 0.601 | 0.662 | 0.407 | 1.6e-54 | |
| TIGR_CMR|GSU_1605 | 410 | GSU_1605 "3-oxoacyl-(acyl-carr | 0.601 | 0.665 | 0.419 | 5.5e-54 | |
| TIGR_CMR|SO_2774 | 412 | SO_2774 "3-oxoacyl-(acyl-carri | 0.607 | 0.669 | 0.410 | 1.9e-53 | |
| TIGR_CMR|CPS_2299 | 412 | CPS_2299 "3-oxoacyl-[acyl-carr | 0.603 | 0.665 | 0.417 | 2.4e-53 | |
| UNIPROTKB|P0AAI5 | 413 | fabF "FabF" [Escherichia coli | 0.607 | 0.668 | 0.421 | 3.8e-53 | |
| TIGR_CMR|ECH_0882 | 422 | ECH_0882 "3-oxoacyl-(acyl-carr | 0.621 | 0.668 | 0.383 | 2.4e-51 |
| TAIR|locus:2027252 FAB1 "fatty acid biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
Identities = 239/301 (79%), Positives = 262/301 (87%)
Query: 140 SGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI 199
SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH+P FY NLL+G SGIS+I
Sbjct: 106 SGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGHDPHTFYENLLQGNSGISQI 164
Query: 200 ETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNE 259
E FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLLTAGKKALADGG+T++VM E
Sbjct: 165 ENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLLTAGKKALADGGVTDEVMAE 224
Query: 260 LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319
DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP
Sbjct: 225 FDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 284
Query: 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDP 379
NYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IPIGLGGFVACRALSQRNNDP
Sbjct: 285 NYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIPIGLGGFVACRALSQRNNDP 344
Query: 380 TKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
TKASRPWD NRDGFVM HAKKRGA IYAEF GGSFT DAYHMTEPHPD
Sbjct: 345 TKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCDAYHMTEPHPD 404
Query: 440 G 440
G
Sbjct: 405 G 405
|
|
| UNIPROTKB|Q9KQH9 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 123/280 (43%), Positives = 175/280 (62%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDG 277
|
|
| TIGR_CMR|VC_2019 VC_2019 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 123/280 (43%), Positives = 175/280 (62%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDG 277
|
|
| TIGR_CMR|CBU_0497 CBU_0497 "3-oxoacyl-acyl carrier protein synthase II" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 120/281 (42%), Positives = 170/281 (60%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M+++RVV+TG+G+VSPLG++ + LL G SG+ I FD +SFPT+IAAE++ F
Sbjct: 1 MEKRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPA 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++ D F+ + + + ++A D G+ +NE + + GV IGSG+GGM
Sbjct: 61 LVLDLKSIRKTDVFVQFAMESARQAWEDSGLE---INETNAPRVGVAIGSGIGGMPWIEK 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL S +K++PF +P A NM S M+++ GPN SI TAC T I +AA
Sbjct: 118 NYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I +A+ M+ GG++ A P+G+GGF A RALS RN++P KASRPWD RDGFV+
Sbjct: 178 IAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAA 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
HAKKR A IYAE G + DAYHMT P P+ +
Sbjct: 238 CVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAE 278
|
|
| TIGR_CMR|CHY_1445 CHY_1445 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 113/277 (40%), Positives = 171/277 (61%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+GL+SPLG ++NL++GVSG+ E+ +FD T F T+IAAE++ F ++
Sbjct: 2 KRVVVTGLGLISPLGIGIKENWDNLMKGVSGVREVSSFDTTGFATRIAAEVRDFDPLKFI 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K ++RMD+F + + A K A+ D G+ +++++ + G+ IGSG+GG+K +
Sbjct: 62 DKKEARRMDRFTQFAVAATKLAIEDAGLE---LSKINPERAGIFIGSGIGGIKTLEEQAA 118
Query: 285 ALRISYK-KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
LR +++PF VP NM +A+ G GPN +I +ACA+ + +A + R
Sbjct: 119 ILREKGPDRVSPFFVPMMIANMAGGQIAITFGLTGPNETIVSACASGANAVGDAFRCLQR 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GE +V + GG++AA+ P+ GF + +A+S RN++P KASRP+D +RDGFVM
Sbjct: 179 GEVDVAIAGGAEAAITPLSFAGFCSMKAMSTRNDEPEKASRPFDKDRDGFVMGEGAGILI 238
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA+IY E G TSDAYH+T P P+G
Sbjct: 239 LETLEHALARGARIYGEIVGYGVTSDAYHITAPDPEG 275
|
|
| TIGR_CMR|GSU_1605 GSU_1605 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 117/279 (41%), Positives = 166/279 (59%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G VSPLG ++ L+ G SGI I FD + P +IA E+K F + ++
Sbjct: 2 RRVVVTGVGAVSPLGVGNAANWDALVSGTSGIGHITRFDASDLPVRIAGEVKGFDPEQYI 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF--YDA 282
K K+MD F+ Y + A A+ D G+ + E + + GVL+G+GLGG+ Y A
Sbjct: 62 DKKEVKKMDLFIQYAMAAAHYAMEDSGLQ---ITEENAERTGVLVGAGLGGLPTIEKYHA 118
Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
L +KK++PF +P N+ +++ G GPN S +ACAT I +A + I
Sbjct: 119 A-MLEGGHKKISPFFIPMLIINLAPGHISIKYGAKGPNLSSVSACATGTHSIGDAYHMIK 177
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXX 402
RG+A+ M+ GG+++ V P+G+GGF +ALS RN+DPT ASRP++ NRDGFV+
Sbjct: 178 RGDADAMIAGGTESTVTPLGIGGFAVMKALSTRNDDPTAASRPFEKNRDGFVLAEGAGIV 237
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
AKKRGAKIYAE G T DAYH+T P P+G+
Sbjct: 238 VLEEYEAAKKRGAKIYAEIVGYGLTGDAYHLTAPAPEGE 276
|
|
| TIGR_CMR|SO_2774 SO_2774 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 115/280 (41%), Positives = 169/280 (60%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+GLV+P+G+ D + LL G SGI+ I FD + F T+ + +K F +
Sbjct: 1 MSKRRVVVTGLGLVTPVGNTVDTTWKALLSGKSGIAPITKFDASEFTTRFSGSVKDFDVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD F+ Y + AG +A+ D G+ M++++ + G IG+G+GGM +
Sbjct: 61 QYLTKKDARKMDLFIQYGMAAGIQAIQDSGLD---MSKVNPGRVGTAIGAGMGGMWLIEQ 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
AL +K++PF VP NM + L++ G GPN++++TAC T I AA
Sbjct: 118 NHSALMNGGPRKISPFFVPSTIINMIAGHLSIMYGMTGPNFAVTTACTTGVHNIGFAART 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+VM+ GG++ P+G+GGF A +ALS RN+DPT ASRPWD +RDGFV+
Sbjct: 178 IAYGDADVMVAGGAEDVTCPLGVGGFGAAKALSTRNDDPTAASRPWDKDRDGFVIGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HAK RGA IY E G + DA+HMT P DG
Sbjct: 238 VMVMEEYEHAKARGATIYGELVGFGMSGDAFHMTSPPSDG 277
|
|
| TIGR_CMR|CPS_2299 CPS_2299 "3-oxoacyl-[acyl-carrier-protein] synthase II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 117/280 (41%), Positives = 169/280 (60%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G++SPL + + + NLL G SGI I+ FD T +PTK A +K F ++
Sbjct: 2 RRVVVTGIGMLSPLANTAEETWQNLLLGKSGIGNIDHFDTTDYPTKFAGLVKDFDAQNYM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF---YD 281
K +K+MD F+ Y + AG +A D G+ + E + + GV IGSG+GG+ + ++
Sbjct: 62 ERKEAKKMDLFIQYGIAAGVQAFKDSGLE---VTEQNAPRIGVAIGSGIGGLGLIEQNHN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ + +K++PF VP NM + L++ G GPN +I+TAC + I +AA I
Sbjct: 119 KLIKAEGNPRKLSPFFVPSTIINMIAGHLSIMFGLQGPNIAITTACTSGVHNIGHAARMI 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+ ++ GG++ A +G+GGF A RALS+RN+DP ASRPWD +RDGFV+
Sbjct: 179 AYGDADAVVAGGAEKASTTLGMGGFGAARALSRRNDDPEAASRPWDKDRDGFVLGDGAGV 238
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
HAK RGAKIYAE G + DAYHMT P +GD
Sbjct: 239 IVVEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPPENGD 278
|
|
| UNIPROTKB|P0AAI5 fabF "FabF" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 118/280 (42%), Positives = 173/280 (61%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ + E + ++ G IGSG+GG+ + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEE 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+L +K++PF VP NM + L + G GP+ SI+TAC + I +AA
Sbjct: 118 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 178 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HAKKRGAKIYAE G +SDAYHMT P +G
Sbjct: 238 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENG 277
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| TIGR_CMR|ECH_0882 ECH_0882 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 114/297 (38%), Positives = 178/297 (59%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS---- 217
M +KRVV+TG+GLV+ LG + +++L +G+SGI +I+ FD + K+A ++ +
Sbjct: 1 MAKKRVVITGLGLVTSLGSDLKTVWDSLSKGISGIRKIDRFDTSDLDCKVAGQVTTKPES 60
Query: 218 ----FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
F ++ K K+MD F+ + + + +A+ D + + +LD S+ GV++GSG+
Sbjct: 61 EEYIFDAGDYIPEKDLKKMDTFIHFGIASATQAINDSNLLD--YKDLDYSRVGVIVGSGI 118
Query: 274 GGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG++ + L+ K+++PF +P + N+ S ++M G+ G N ++ TAC+T
Sbjct: 119 GGLQFIEKTVICLKERGPKRISPFFIPASLINLTSGHISMKYGFTGLNDAVVTACSTGAQ 178
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRD 391
I NAA I GEA+V++ GG+++A+ IG+ GF A +ALS + ND P ASRPWD RD
Sbjct: 179 AIGNAARVIQSGEADVIIAGGTESAICRIGIAGFAAMKALSTKFNDTPELASRPWDKQRD 238
Query: 392 GFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQ 448
GFVM HAKKRGA+IY E G TSDAYHM+ PHP+G GG++
Sbjct: 239 GFVMGEGSGVVILEDYEHAKKRGARIYGELLGYGMTSDAYHMSAPHPEGK---GGIK 292
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9P4 | KASC2_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.6931 | 0.8898 | 0.7467 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.2__1765__AT1G74960.1 | annotation not avaliable (543 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.4__990__AT2G30200.1 | annotation not avaliable (367 aa) | • | • | • | • | • | • | 0.955 | ||
 | fgenesh2_kg.2__215__AT1G62640.1 | annotation not avaliable (404 aa) | • | • | • | • | • | 0.945 | |||
 | fgenesh2_kg.6__977__AT5G10160.1 | annotation not avaliable (219 aa) | • | • | • | • | 0.777 | ||||
 | fgenesh2_kg.4__146__AT2G22230.1 | annotation not avaliable (224 aa) | • | • | • | • | 0.748 | ||||
 | fgenesh1_pm.C_scaffold_8000016 | annotation not avaliable (97 aa) | • | • | • | 0.703 | |||||
 | scaffold_303363.1 | annotation not avaliable (390 aa) | • | • | • | 0.664 | |||||
 | scaffold_200993.1 | annotation not avaliable (126 aa) | • | • | 0.578 | ||||||
 | scaffold_703504.1 | annotation not avaliable (127 aa) | • | • | • | 0.573 | |||||
 | fgenesh2_kg.7__3034__AT5G35360.1 | annotation not avaliable (537 aa) | • | • | • | 0.550 | |||||
 | fgenesh2_kg.4__2654__AT2G44620.1 | annotation not avaliable (122 aa) | • | • | • | 0.544 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 454 | |||
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 0.0 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 1e-129 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 1e-128 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 1e-126 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 1e-119 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-102 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 5e-85 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 7e-83 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 8e-79 | |
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 2e-71 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 8e-62 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 5e-55 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 4e-48 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 8e-47 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 5e-40 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 1e-38 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 2e-38 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 5e-32 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 9e-31 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 4e-30 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 2e-25 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 4e-24 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 2e-17 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 3e-16 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 1e-12 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 2e-10 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 9e-10 | |
| PRK06519 | 398 | PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protei | 2e-05 | |
| PRK08963 | 428 | PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | 1e-04 | |
| cd00829 | 375 | cd00829, SCP-x_thiolase, Thiolase domain associate | 0.004 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 0.004 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 690 bits (1781), Expect = 0.0
Identities = 323/437 (73%), Positives = 346/437 (79%), Gaps = 35/437 (8%)
Query: 4 SCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGG 63
S S SPLCTWLVAACMS +C D HQ ++ + G + RRRK G
Sbjct: 3 SASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGRSRRRRKRRKCSSASG 54
Query: 64 EVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTA 123
CL F PC Y SS G N SS FGSN+ +
Sbjct: 55 SASILVTS----------------CLAFGPCTHYNSS-------GGNALSSLFGSNSVS- 90
Query: 124 TLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPD 183
LNR QRR NR RSG+AMAVAVQP++EV TKKKP KQ+RVVVTGMG+VSPLGH+PD
Sbjct: 91 -LNRNQRRR--NRAARSGKAMAVAVQPEKEVETKKKPLTKQRRVVVTGMGVVSPLGHDPD 147
Query: 184 VFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243
VFYNNLLEGVSGISEIE FDC+ FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAG
Sbjct: 148 VFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207
Query: 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT 303
KKALADGGITEDVM ELDK+KCGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPFATT
Sbjct: 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATT 267
Query: 304 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL 363
NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA+VMLCGGSDAA+IPIGL
Sbjct: 268 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGL 327
Query: 364 GGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRG 423
GGFVACRALSQRN+DPTKASRPWD+NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF G
Sbjct: 328 GGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLG 387
Query: 424 GSFTSDAYHMTEPHPDG 440
GSFT DAYHMTEPHP+G
Sbjct: 388 GSFTCDAYHMTEPHPEG 404
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Length = 540 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 378 bits (973), Expect = e-129
Identities = 134/278 (48%), Positives = 190/278 (68%), Gaps = 4/278 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G V+PLG+ + F+ NLL G SGI I FD + P KIA E+K F + ++
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K ++RMD+F+ Y L A K+A+ D G+ + E D + GV+IGSG+GG++ +
Sbjct: 61 DKKEARRMDRFIQYALAAAKEAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHI 117
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L ++++PF +P + NM + +++ G GPN+++ TACAT I +A I R
Sbjct: 118 VLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQR 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G+A+VM+ GG++AA+ P+G+ GF A +ALS RN+DP KASRP+D +RDGFVMGEGAGVL+
Sbjct: 178 GDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
LEELEHAK RGAKIYAE G + DAYH+T P P+G+
Sbjct: 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGE 275
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3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-128
Identities = 138/278 (49%), Positives = 190/278 (68%), Gaps = 4/278 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G V+PLG+ + F+ LL G SGI I FD + FP++IA E+ F + ++
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +RMD+F + L A ++ALAD G+ + ELD + GV+IGSG+GG+ +A
Sbjct: 61 DRKELRRMDRFAQFALAAAEEALADAGLDPE---ELDPERIGVVIGSGIGGLATIEEAYR 117
Query: 285 ALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
AL ++++PF VP A NM + +A+ LG GPNY++STACA+ I +AA I
Sbjct: 118 ALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G A+V++ GG++A + P+ L GF A RALS RN+DP KASRP+D +RDGFV+GEGAGVL+
Sbjct: 178 GRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
LE LEHAK RGAKIYAE G +SDAYH+T P PDG+
Sbjct: 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGE 275
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KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-126
Identities = 140/283 (49%), Positives = 190/283 (67%), Gaps = 14/283 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G VSPLG++ + + NLL G SGI I FD + KIA E+K F+ D ++
Sbjct: 2 RRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ K ++RMD+F+ Y + A K+A+ D G+ + E + + GV+IGSG+GG++ +
Sbjct: 62 SRKEARRMDRFIQYGIAAAKQAVEDAGL---EITEENADRIGVIIGSGIGGLETIEEQHI 118
Query: 285 AL------RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
L R+S PF VP A NM + +++ G GPN+SI TACAT I +AA
Sbjct: 119 TLLEKGPRRVS-----PFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAA 173
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398
I G+A+VM+ GG++AA+ P+G+ GF A RALS RN+DP +ASRP+D +RDGFVMGEG
Sbjct: 174 RLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEG 233
Query: 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
AG+L+LEELEHAK RGAKIYAE G T DAYHMT P PDG+
Sbjct: 234 AGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGE 276
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Length = 411 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 353 bits (909), Expect = e-119
Identities = 123/290 (42%), Positives = 172/290 (59%), Gaps = 12/290 (4%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS---- 217
M +KR+VVTGMG VSPLG + F+ LL G SGI + F TKI ++
Sbjct: 1 MNKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAED 60
Query: 218 ----FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
F D ++ PK ++MD+F+L+ + A K+ALA G D D+ + +IGSG+
Sbjct: 61 AEAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPD--TLEDRERTATIIGSGV 118
Query: 274 GGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG +A+ L ++++PF +P TNM + +++ G+ GP + TACA
Sbjct: 119 GGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQ 178
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRD 391
I +AA I GEA+V +CGG++AA+ + L GF A RALS R ND P +ASRP+D +RD
Sbjct: 179 AIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRD 238
Query: 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
GFVMGEGAG+L++E LEHA RGA AE G ++DAYHMT DG+
Sbjct: 239 GFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGE 288
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Length = 424 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = e-102
Identities = 131/279 (46%), Positives = 177/279 (63%), Gaps = 7/279 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+VS LG+ + + LL G SGI I FD + KIA EIK D +
Sbjct: 3 RRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
A K + MD+F + A +AL D G+ + + GV IGSG+GG++ ++
Sbjct: 61 AKKERRFMDRFSQLAVVAAVEALEDAGLDNE---LNVDMRVGVAIGSGIGGLEDIEFDLD 117
Query: 285 ALRISY--KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
AL + K+++PF VP N+ + +A+ G GPNY+ TACAT I +A I
Sbjct: 118 ALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIR 177
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
G+A+V++ GG++AA+ P+G+ GF A RALS RN+DP KASRP+D NRDGFV+GEGAG L
Sbjct: 178 LGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGAL 237
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+LEELEHA RGAKIYAE G TSDAYH+T P PDG+
Sbjct: 238 VLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGE 276
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Length = 412 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 5e-85
Identities = 124/281 (44%), Positives = 170/281 (60%), Gaps = 12/281 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+G+++ LG + + + G GI +I FD + FP +IA EI F +
Sbjct: 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
PK K+ D+F+ L A ++A+ D G + ELD + GV SG+GG+ IE
Sbjct: 62 DPKEVKKADRFIQLGLKAAREAMKDAGFLPE---ELDAERFGVSSASGIGGLP----NIE 114
Query: 285 ALRISY-----KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
I +K++PF +P A NM ++++ G GPN S TACA I+ A
Sbjct: 115 KNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVK 174
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I+ G A+ ML G+++A+ P+G+GGF A +ALS RN+DP KASRP+D +RDGFVMGEGA
Sbjct: 175 TIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
G L+LEE E AKKRGAKIYAE G + DA H+T P P+G
Sbjct: 235 GALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPEG 275
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Length = 406 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 261 bits (667), Expect = 7e-83
Identities = 130/280 (46%), Positives = 185/280 (66%), Gaps = 4/280 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F+ +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ + E + + GV IGSG+GG+ +
Sbjct: 61 EYMSKKDARKMDLFIQYGIAAGIQALDDSGLE---VTEENAHRIGVAIGSGIGGLGLIEA 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+G+GAG
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+++LEE EHAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 MMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDG 277
|
Length = 414 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 8e-79
Identities = 112/285 (39%), Positives = 168/285 (58%), Gaps = 21/285 (7%)
Query: 174 LVSPLGHEPDVFYNNLLEGVSGISEIETFDC----------------TSFPTKIAAEIKS 217
+V+PLG + + L+ G SGI ++ F + P +IAAE+
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
D +KR + + + A ++ALAD + D+++E D+ + GV IGSG+G +
Sbjct: 61 SEFDP-SDFAPTKRESRATHFAMAAAREALADAKL--DILSEKDQERIGVNIGSGIGSLA 117
Query: 278 VFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
D ++ L + +++P+ +P NM + ++A+ GP+ S TACAT CI
Sbjct: 118 DLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGE 177
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVM 395
A I GEA++M+CGG++A++ P+ GF RAL + N+DP +ASRP+D +R GFVM
Sbjct: 178 AFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVM 237
Query: 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
GEGAG+L+LEELEHA +RGAKIYAE RG +SDA+H+T PHPDG
Sbjct: 238 GEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDG 282
|
Length = 421 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 2e-71
Identities = 117/306 (38%), Positives = 177/306 (57%), Gaps = 33/306 (10%)
Query: 160 PHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI-------ETFDCT------- 205
P + +RVVVTG+GLV+PLG + + L+ G G+ + ++ D
Sbjct: 1 PPLPTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLD 60
Query: 206 SFPTKIAAEIKS------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADG--GITEDVM 257
P+++AA + F + W+ S+ +F+ Y L A +AL+D +ED
Sbjct: 61 QLPSRVAALVPRGTGPGDFDEELWLN---SRSSSRFIGYALCAADEALSDARWLPSEDE- 116
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYK--KMNPFCVPFATTNMGSAMLAMDLG 315
K + GV IG G+G + +A L + +++PF VP NM + +++ G
Sbjct: 117 ---AKERTGVSIGGGIGSITDILEA-AQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172
Query: 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375
+ GPN++ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS +
Sbjct: 173 FQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTK 232
Query: 376 NND-PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT 434
N PT+ASRP+D +RDGFV+GEGAGVL+LEELEHAK+RGAKIYAE RG + DA+H+T
Sbjct: 233 FNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHIT 292
Query: 435 EPHPDG 440
+PH DG
Sbjct: 293 QPHEDG 298
|
Length = 437 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 8e-62
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 20/254 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDG 222
+ V +TGMG P G P+ F+ LL G I E D + P+++A EI F D
Sbjct: 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPA-DLSGLYPPSRVAGEIYGFDFDA 60
Query: 223 W---VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF 279
++P+ ++ MD L A +AL D G+ + D+ GV +GSG G
Sbjct: 61 AFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDR--TGVFVGSGSG----D 114
Query: 280 YDAIEALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
Y ++AL ++++P+ ++ + ++ LG GP+ ++ TAC++S L+A
Sbjct: 115 YAELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSS-LVALHA 173
Query: 338 A-NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396
A I RGE ++ L GG +A + P G GF A AL + P KA P+ DGFV G
Sbjct: 174 AVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP-DGPCKAFDPFA---DGFVRG 229
Query: 397 EGAGVLLLEELEHA 410
EG G +LL+EL A
Sbjct: 230 EGVGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 5e-55
Identities = 108/285 (37%), Positives = 155/285 (54%), Gaps = 20/285 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+VS +G+ +L EG SGI+ F +++ +K G +
Sbjct: 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-LDPTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITED-VMNELDKSKCGVLIGSGLGGMKVFYDAI 283
K+ + M Y A ++A+AD G++E+ V N + G++ GSG G + +A
Sbjct: 61 DRKVMRFMGDASAYAYLAMEQAIADAGLSEEQVSNP----RTGLIAGSGGGSTRNQVEAA 116
Query: 284 EALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+A+R K++ P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 117 DAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQI 176
Query: 342 IRGEANVMLCGGSD-----AAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVM 395
G+ +++ GG + + + F A ALS + ND P KASR +D NRDGFV+
Sbjct: 177 QLGKQDIVFAGGGEELDWEMSCL------FDAMGALSTKYNDTPEKASRAYDANRDGFVI 230
Query: 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
G GV+++EELEHA RGAKIYAE G TSD Y M P +G
Sbjct: 231 AGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEG 275
|
Length = 406 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 4e-48
Identities = 96/274 (35%), Positives = 145/274 (52%), Gaps = 14/274 (5%)
Query: 166 RVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
RVV+TG+G+VSP G E + F+ L EG SGI+ + + F +A +I + G
Sbjct: 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGDIPG 60
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
W A + + +D+ L L A ++ALAD GIT+ E+ S+ GV++GSG+GG++
Sbjct: 61 WDAKR-TGIVDRTTLLALVATEEALADAGITDP--YEVHPSEVGVVVGSGMGGLRFLRRG 117
Query: 283 IEALRISYKKMNPFCVP--FATTNMGSAMLAMDL-GWMGPNYSISTACATSNFCILNAAN 339
+ + +NP+ P + N + + + L GP + ACAT+ + A
Sbjct: 118 GKLD---ARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVE 174
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I G+A++++ GG + + GL GF ALS +P + SRP+D RDGFV EGA
Sbjct: 175 AIRSGKADIVVVGGVED-PLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFVEAEGA 233
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHM 433
GVL+LE E A RGA IY G + T+D
Sbjct: 234 GVLVLERAELALARGAPIYGRVAGTASTTDGAGR 267
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 8e-47
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 16/281 (5%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGI-----SEIETFDCTSFPTKIAAEIKSFSTD 221
VVVTG+ + + L + + + LL+G SGI +E FD P +I + D
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFD---LPVRIGGHLLE-EFD 69
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ +RM G++ + G E +D ++ V IG+GLG +
Sbjct: 70 HQLTRVELRRMSYLQRMSTVLGRRVWENAGSPE-----VDTNRLMVSIGTGLGSAEELVF 124
Query: 282 AIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
A + +R + ++P V N +A + ++ + +ACA+ + I A
Sbjct: 125 AYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQ 184
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRA-LSQRNNDPTKASRPWDINRDGFVMGEGA 399
I+ GEA++ +CGG + + + + GF R +S N+DP A RP+D +RDGFV GEG
Sbjct: 185 IVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGG 244
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
++++E EHAK RGA I A G S TSD +HM P P+G
Sbjct: 245 ALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNG 285
|
Length = 418 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-40
Identities = 99/305 (32%), Positives = 136/305 (44%), Gaps = 22/305 (7%)
Query: 156 TKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEI 215
T + H+ + V VTGMG+V+ LG + L G SGI I F T+IA +
Sbjct: 2 TAYRDHLGRPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTV 61
Query: 216 KSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMN----------ELDKSKC 265
+ A LS+ + + A ++ALA GI + EL+
Sbjct: 62 DFLPESPFGASALSEALAR------LAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPAR 115
Query: 266 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS--AMLAMDLGWMGPNYSI 323
L + YD + LR + + F GS LA G G S+
Sbjct: 116 FALAAAVGDNDAPSYDRL--LRAA--RGGRFDALHERFQFGSIADRLADRFGTRGLPISL 171
Query: 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383
STACA+ I I RGE + LC +D +V L F ALS +N+ P KAS
Sbjct: 172 STACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKAS 231
Query: 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIM 443
+P+ +RDGFVM EGAG L+LE LE A RGAKI G +D++H T PDG
Sbjct: 232 KPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPA 291
Query: 444 LGGVQ 448
+G ++
Sbjct: 292 IGAIR 296
|
Length = 425 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 101/297 (34%), Positives = 133/297 (44%), Gaps = 45/297 (15%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGW 223
+RVVVTGMG V+ LG + L G + + + +D T++AA I F
Sbjct: 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAH 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
K + M + L A + AL D G+ D + L + G+ GS G D I
Sbjct: 62 YTRKKIRSMGRVSLMATRASELALEDAGLLGDPI--LTDGRMGIAYGSSTGST----DPI 115
Query: 284 EAL-------------RISYKKMNPFCVPFATT--NMGSAMLAMDLGWMGPNYSISTACA 328
A +Y +M P TT N+G + G G S+AC
Sbjct: 116 GAFGTMLLEGSMSGITATTYVRMMPH-----TTAVNVG-----LFFGLKGRVIPTSSACT 165
Query: 329 TSNFCILNAANHIIRGEANVMLCGG------SDAAVIPIGLGGFVACRALSQRNNDPTKA 382
+ + I A I G VML GG ++AAV F A S RN+ P
Sbjct: 166 SGSQGIGYAYEAIKYGYQTVMLAGGAEELCPTEAAV-------FDTLFATSTRNDAPELT 218
Query: 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
RP+D NRDG V+GEGAG L+LEELEHAK RGA IYAE G SD H+T+P +
Sbjct: 219 PRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAE 275
|
Length = 405 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 83/189 (43%), Positives = 112/189 (59%), Gaps = 8/189 (4%)
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMD 313
N + + +IG+G+GG F A+R S K+++PF VP N+ + +++
Sbjct: 21 NTEKQERTATIIGAGIGG---FPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIK 77
Query: 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS 373
+ GP + TACA I +A I EA+V LCGG++A + + L GF A RALS
Sbjct: 78 HHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALS 137
Query: 374 QR-NNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH 432
N+ P KASRP+D RDGFVMGEGAG+L++EELEHA RGAK AE G ++DAYH
Sbjct: 138 THFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYH 197
Query: 433 MTEPHPDGD 441
MT DGD
Sbjct: 198 MTSGAEDGD 206
|
Length = 342 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-32
Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 32/293 (10%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSFPTKIAAEIKSFSTDGW 223
+ + GM P +PD F+ NLLEG ISEI + +D + K+++ G
Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGG 61
Query: 224 --------------VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
++P+ ++ MD LL +AL D G + L S+ GV +
Sbjct: 62 FLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYS---PESLAGSRTGVFV 118
Query: 270 GSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACAT 329
G+ D +E L +++ + + + ++ GP+ ++ TAC++
Sbjct: 119 GAS------SSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSS 172
Query: 330 SNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389
S + A + GE ++ L GG + + P GF LS P RP+D +
Sbjct: 173 SLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPFDAD 227
Query: 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--HMTEPHPDG 440
DG+V GEG GV++L+ L A + G +IYA RG + D +T P +
Sbjct: 228 ADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEA 280
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 9e-31
Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+R VVTG+G+V+P G + ++ +L+G SG+ I FD + +P ++A E+ F +
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+L + D+ L A ALAD G+ + D GV+ S GG + ++
Sbjct: 61 PGRLLPQTDRMTRLALAAADWALADAGVDPAALPPYD---MGVVTASAAGGFEFGQRELQ 117
Query: 285 ALRISYKKMNPFCVP------FATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
L + K F N G +++ G GP+ + A + A
Sbjct: 118 KL---WSKGPRHVSAYQSFAWFYAVNTGQ--ISIRHGMRGPSGVVVAEQAGGLDALAQAR 172
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398
+ RG +++ GG D+A+ P G ++ LS ++DP +A P+D G+V GEG
Sbjct: 173 RLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLS-TSDDPARAYLPFDAAAAGYVPGEG 230
Query: 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
+L+LE+ A++RGA++Y E G + T D
Sbjct: 231 GAILVLEDAAAARERGARVYGEIAGYAATFD 261
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 90/284 (31%), Positives = 123/284 (43%), Gaps = 42/284 (14%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVA 225
+VVVTG+GLVS LG + LL+G SGI + F P I + +
Sbjct: 3 KVVVTGIGLVSALGDLEQS-WQRLLQGKSGIKLHQPF--PELPPLPLGLIGNQPSS---L 56
Query: 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI-- 283
L+K T AL D G+T + CGV+IGS G
Sbjct: 57 EDLTK----------TVVTAALKDAGLT------PPLTDCGVVIGSSRG-----CQGQWE 95
Query: 284 EALRISYKKMNPFCVPFATTN-------MGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+ R Y+ + N + A +G GP + ACAT + I
Sbjct: 96 KLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQ 155
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396
I G+ ++ G +A + P+ L GF AL+ T A P+D R+G V+G
Sbjct: 156 GVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA-----KTGAY-PFDRQREGLVLG 209
Query: 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
EG +L+LE E A+KRGAKIY + G T DAYHM+ P PDG
Sbjct: 210 EGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDG 253
|
Length = 381 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 12/206 (5%)
Query: 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMN 294
+ A ++A+AD G++ E K+ ++ GG + + +
Sbjct: 11 VSILGFEAAERAIADAGLSR----EYQKNPIVGVVVGTGGG---SPRFQVFGADAMRAVG 63
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P+ V A S +A LG GP Y +S ACA S + AA+ + G+ +++L GGS
Sbjct: 64 PYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGS 123
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRG 414
+ P+ + P KASR +D DGFV G+GAG L++EELEHA RG
Sbjct: 124 EELAAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARG 178
Query: 415 AKIYAEFRGGSFTSDAYHMTEPHPDG 440
A IYAE G + T D M P
Sbjct: 179 AHIYAEIVGTAATIDGAGMGAFAPSA 204
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 23/292 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI--------SEIETFDCTSFPTKIAAEIK 216
VVVTG+G+VS +G F LL G + I AE+
Sbjct: 2 DEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELD 61
Query: 217 SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGM 276
S + + KL +R L A ++A D + +D + G+++G G
Sbjct: 62 SLALPERLDAKLLRRASLSAQAALAAAREAWRDAA-----LGPVDPDRIGLVVG----GS 112
Query: 277 KVFYDAIEALRISYKKMNPFCVP-FATTNMGS---AMLAMDLGWMGPNYSISTACATSNF 332
+ + +Y+ F P + + M + + + G G +++ A A+
Sbjct: 113 NLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASASGQL 172
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRAL-SQRN-NDPTKASRPWDINR 390
++ AA + G + + G+ + + A+ S R ++P A RP+D +R
Sbjct: 173 AVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDR 232
Query: 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDI 442
DGF+ GE G ++LE E A++RGA+ YA+ G S DA +P +G++
Sbjct: 233 DGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLEGEM 284
|
Length = 410 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-17
Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 37/297 (12%)
Query: 167 VVVTGMGLVSPLGHE-PDVFYNNLLEGVSGISEI--ETFDCTSF-------PTKIAAEIK 216
+ + GM P G + P+ F++ L EG I+E+ + +D ++ P K +
Sbjct: 6 IAIIGMACRFP-GADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWG 64
Query: 217 SFSTD---------GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
F D G ++P+ ++ MD LL +AL D GI D L S GV
Sbjct: 65 GFLDDVDDFDALFFG-ISPREAEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGV 120
Query: 268 LIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
G+ + + + + ++++ + ++ LG GP+ ++ TAC
Sbjct: 121 FAGASVAD--YLLLLLADDEAE----PEYAITGNSSSVAAGRISYVLGLSGPSVTVDTAC 174
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
++S + A + GE ++ L GG + + P F A LS P + +D
Sbjct: 175 SSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFD 229
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD--AYHMTEPHPDGDI 442
+ DG+V GEGAGV++L+ L A++ G +IYA RG + D + +T P+ +
Sbjct: 230 ADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQA 286
|
Length = 1061 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 266 GVLIG---SGLG----GMKVFYDAIEAL--RISYKKMNPFCVPFATTNMGSAMLAMDLGW 316
GV++G SG+ + A AL Y + + + L LG
Sbjct: 98 GVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSL--------ADFLRAYLGL 149
Query: 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376
GP Y+ISTAC++S +A + G + + GG D ++ + L GF + +LS
Sbjct: 150 SGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVD-SLCRLTLNGFNSLESLS--- 205
Query: 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
P RP+ NRDG +GE A LLE R G +SDA+HM+ P
Sbjct: 206 PQPC---RPFSANRDGINIGEAAAFFLLE-------REDDAAVALLGVGESSDAHHMSAP 255
Query: 437 HPDG 440
HP+G
Sbjct: 256 HPEG 259
|
Length = 392 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 67.7 bits (167), Expect = 1e-12
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 317 MGPNYSIS--TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374
+YS++ TAC++S + A + GE ++ L GG + + P G LS
Sbjct: 85 SSSDYSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGMLS- 143
Query: 375 RNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH-- 432
P + +D + DG+V GEG GV++L+ L A + G I A RG + D
Sbjct: 144 ----PDGRCKTFDASADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNG 199
Query: 433 MTEPHPDGDIMLGGV 447
+T P +++G V
Sbjct: 200 ITAPSGPAQLLIGSV 214
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 42/162 (25%), Positives = 59/162 (36%), Gaps = 45/162 (27%)
Query: 275 GMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM------LAMDLGWM-GPNYSISTAC 327
G + AI +S + V TT LA LG GP YS++ AC
Sbjct: 11 GFEAAEQAIADAGLSKGPIVGVIV--GTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQAC 68
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
AT + A + G+A+++L GGS+
Sbjct: 69 ATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------- 97
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
FV G+GA ++E EHA +RGA AE + T D
Sbjct: 98 -----FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFD 134
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 9e-10
Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 42/245 (17%)
Query: 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK-------- 277
P + + D L L K+ L D G+ + D+ K G+ +G G GG K
Sbjct: 84 PNILELTDISQLLSLVVAKEVLNDAGLPDG----YDRDKIGITLGVG-GGQKQSSSLNAR 138
Query: 278 --------VFYDA----------IEALRISYKKMNPFCVPFATTNMGSAMLA--MDLGWM 317
VF + I+ + Y P + N+ S +A DLG
Sbjct: 139 LQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLG-- 196
Query: 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNN 377
G N + ACA S I A + ++ G + +M+ GG P F A +
Sbjct: 197 GMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT--- 253
Query: 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--E 435
+ +P+DI+ G ++GEG G++ L+ LE A++ G +IYA +G +SD +
Sbjct: 254 --NEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYA 311
Query: 436 PHPDG 440
P P+G
Sbjct: 312 PRPEG 316
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 336 NAANHIIRGEANVMLCGGSDAA-----VIPIGLGGFVA---CRALSQRNNDPTKASRPWD 387
A I G+++ L GG+ A ++ LGG + + R +
Sbjct: 184 IAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDG------- 236
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
GF++G G L+LE EHA+ RGA+ YA
Sbjct: 237 ---GGFILGSGGAFLVLESREHAEARGARPYAR 266
|
Length = 398 |
| >gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSD-AAVIPIGL 363
YS+S ACATS + N A I+ G ++ + GG+D ++V+PIG+
Sbjct: 85 YSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGV 128
|
Length = 428 |
| >gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 32/131 (24%)
Query: 227 KLSKRMDK-FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEA 285
+R D+ + A + AL D G+ I+A
Sbjct: 7 PFGRRSDRSPLELAAEAARAALDDAGLE--------------------------PADIDA 40
Query: 286 LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE 345
+ + + G+ + P + A A+ + + AA I G
Sbjct: 41 VVVGN-----AAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGL 95
Query: 346 ANVMLCGGSDA 356
A+V+L G++
Sbjct: 96 ADVVLVVGAEK 106
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. Length = 375 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 308 AMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA-AVIPIGLGGF 366
A L L P Y+++ CA+ ++ AA I GEA+V++ GG ++ + +P +
Sbjct: 64 AALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSVPRS 123
Query: 367 VACRALSQRNNDPTKASRPWDINRDGF---VMGEGA 399
+ N + + D D MG A
Sbjct: 124 RR-WGVKPGNAE-LEDQILKDGLDDPLNGLSMGLTA 157
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.93 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 99.91 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.61 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.42 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.36 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.31 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.3 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.29 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.28 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.26 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.24 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.24 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.22 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.21 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.2 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.2 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.15 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.15 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.13 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.12 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.12 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.11 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.1 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.07 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.07 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.06 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.04 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.04 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.03 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.03 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.03 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.02 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.01 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.01 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 98.98 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 98.98 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 98.96 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 98.96 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 98.95 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 98.95 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 98.94 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 98.94 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 98.92 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 98.89 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 98.85 | |
| PRK06158 | 384 | thiolase; Provisional | 98.79 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 98.74 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 98.73 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 98.72 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 98.72 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.7 | |
| PRK06840 | 339 | hypothetical protein; Validated | 98.7 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 98.68 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 98.67 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 98.66 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.65 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 98.63 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 98.62 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 98.6 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 98.59 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 98.57 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 98.57 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 98.57 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.57 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 98.56 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 98.56 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 98.54 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 98.51 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 98.49 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 98.47 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 98.47 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 98.47 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 98.46 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 98.41 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 98.41 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 98.39 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 98.38 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 98.36 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 98.36 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 98.33 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 98.31 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 98.26 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 98.24 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 98.22 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 98.2 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 98.08 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 98.04 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 97.95 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 97.9 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 97.86 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 97.83 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 97.73 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 97.67 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 97.66 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 97.56 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 97.51 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 97.45 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 97.38 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 96.87 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 96.33 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 96.12 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 96.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 95.07 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 94.29 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 92.99 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 88.78 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 85.96 |
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=580.56 Aligned_cols=416 Identities=77% Similarity=1.238 Sum_probs=337.7
Q ss_pred CCcccccchhhHHHHHhhhccccCCCCCCCCCccccccCCCcccchhHHHhhhhhcccCCCccccCCCceecccCCCchh
Q 012867 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGSSHSI 81 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 81 (454)
|+++++++|||||||||||++++.++..+..... +..+| .+||+.+.++.. . .++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~--------~------~~~~~ 57 (540)
T PLN02787 1 MASASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGR-SRRRRKRRKCSS--------A------SGSAS 57 (540)
T ss_pred CcccccchhHHHHHHHHHhhhhhccCCCcccccc--------ccccc-cchhhhhhhhcc--------c------cccch
Confidence 6889999999999999999999998777332221 11121 111111111111 0 12333
Q ss_pred hHhhhccccCccchhhhhcCCCccccCCCCccccccCCCCcccchhhhhhhhccccccCCcceeEEeccchhhhccCCCC
Q 012867 82 QSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPH 161 (454)
Q Consensus 82 ~~l~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (454)
..+.. .+..|+|+.+....|-. ...+|+.+|.+ +.+++++ ..+....++..+...+|.........+.
T Consensus 58 ~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (540)
T PLN02787 58 ILVTS-CLAFGPCTHYNSSGGNA-------LSSLFGSNSVS--LNRNQRR--RNRAARSGKAMAVAVQPEKEVETKKKPL 125 (540)
T ss_pred hhccc-hhcccchhhcccccccc-------ccccccCCCcc--ccccccc--ccccCCCcccceeccCcccccccccCCC
Confidence 32222 33338888887663322 23457765554 5544444 4444455555555555544333333333
Q ss_pred CccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHH
Q 012867 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~ 241 (454)
+++++|||||||+++|.|.++++||++|.+|+++|+++++|+.+.++.++++++++|+++.|+++++.++||+++++++.
T Consensus 126 ~~~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~ 205 (540)
T PLN02787 126 TKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLT 205 (540)
T ss_pred CCCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHH
Confidence 45579999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcCCCc
Q 012867 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (454)
Q Consensus 242 aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (454)
++++||+|||++++.++.+++.|+|||+|+..+++..+++.++.+...+.+++|+.++..+.|+.+++|++.|||+||++
T Consensus 206 Aa~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~Gp~~ 285 (540)
T PLN02787 206 AGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 285 (540)
T ss_pred HHHHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCCCCcc
Confidence 99999999999753222456789999999999998888887777766667789998888889999999999999999999
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
+|++||+||+.||++|+++|++|+||+|||||+|..++|..+.+|..+++|++.+++|++.|||||.++|||++|||+++
T Consensus 286 tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GEGAa~ 365 (540)
T PLN02787 286 SISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGV 365 (540)
T ss_pred ccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccccceEE
Confidence 99999999999999999999999999999999999899999999999999998888899999999999999999999999
Q ss_pred eehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 402 lvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+|||++++|++||++|||+|+|+++++|++|++.|+|+|+++.++|+++++
T Consensus 366 lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~ 416 (540)
T PLN02787 366 LLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALA 416 (540)
T ss_pred EEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998874
|
|
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=480.97 Aligned_cols=289 Identities=50% Similarity=0.795 Sum_probs=277.9
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
++||||||||+++|+|.+++++|++|.+|+++|+.++.++...+|..+++.|+.|+...|+++...++|++..+|++.++
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
+|||+|+|+.+..+++.+..++||.||++++++..+.+....+.+ ++++++||.+|..+.|+.++.||+.+||+||+.+
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~Gpnhs 182 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNHS 182 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCcCCchh
Confidence 999999999876556778899999999999999888876666665 5999999999999999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
++|||++|..+|..|++.|+.|+.|++|+||+|..++|..+.+|++++.||++|++|...|||||.+|||||+|||+|++
T Consensus 183 vSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGEGagvl 262 (440)
T KOG1394|consen 183 VSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGEGAGVL 262 (440)
T ss_pred hHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeeccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++|||++||++|||||.||++++|+||||.|+|+|.|+..||+++.+
T Consensus 263 vlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~ 312 (440)
T KOG1394|consen 263 VLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALK 312 (440)
T ss_pred ehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988763
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-56 Score=458.04 Aligned_cols=286 Identities=45% Similarity=0.742 Sum_probs=268.1
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
.++|||||||+++|.|.++++||++|.+|+++|+++++|+.+.++..+++.+++||+++|+++++.++||+++++++.++
T Consensus 3 ~~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~ 82 (414)
T PRK08722 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAG 82 (414)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999899999999999999998899999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||+++. ..+..|+|||+|++.+++...++.+..+.+ +...++|+.++..+.|.++++|+++||++||+++
T Consensus 83 ~~Al~dAGl~~~---~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~Gp~~t 159 (414)
T PRK08722 83 IQALDDSGLEVT---EENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIA 159 (414)
T ss_pred HHHHHHcCCCcc---ccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCCCccc
Confidence 999999999754 556789999999999999888777766553 4566788889999999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|++.||++|+++|++|+||+|||||+|..++|..+.+|..+++|+..+++|++.|||||.+++||++|||++++
T Consensus 160 i~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGaaal 239 (414)
T PRK08722 160 ISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGMM 239 (414)
T ss_pred cccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceEEEE
Confidence 99999999999999999999999999999999999999999999999999977778999999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++++|+++|++||++|+|+++++|++|++.|+|++++..++|+++|+
T Consensus 240 vLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~ 289 (414)
T PRK08722 240 VLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMR 289 (414)
T ss_pred EEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988874
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-56 Score=500.82 Aligned_cols=270 Identities=26% Similarity=0.462 Sum_probs=242.6
Q ss_pred eEEEecccccccCCCCchhHHhhhhccccCCccc--ccccCCCCc-----------cccccc---ccccccCcc-ccchh
Q 012867 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSFP-----------TKIAAE---IKSFSTDGW-VAPKL 228 (454)
Q Consensus 166 ~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~--~~~~~~~~~-----------~~~~g~---i~~fd~~~f-i~~~~ 228 (454)
+|||+||+|+||+.+++++||++|.+|+++|+++ +|||++.++ .++++. ++.||+.|| |+|+|
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPrE 84 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPRE 84 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHHH
Confidence 3999999999999999999999999999999999 477776653 345554 456999999 99999
Q ss_pred hhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchh
Q 012867 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (454)
Q Consensus 229 a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~ 308 (454)
+..|||||||+|+.+|+|||||||.+. .+.++++|||+|.+..+|....... . ...+++...++..+++++
T Consensus 85 A~~mDPQqRllLe~aw~AlEdAG~~~~---~l~g~~tgV~~g~~~~~y~~~~~~~-----~-~~~~~~~~~g~~~~~~a~ 155 (1061)
T COG3321 85 AEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGVFAGASVADYLLLLLAD-----D-EAEPEYAITGNSSSVAAG 155 (1061)
T ss_pred HHhcCchHhHHHHHHHHHHHHcCCCcc---ccCCcceEEEEeeccCccccccccc-----c-ccccceecccchhhHHHH
Confidence 999999999999999999999999997 7788899999999988886543211 0 134667777888889999
Q ss_pred HHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC
Q 012867 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (454)
Q Consensus 309 ~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~ 388 (454)
||||.|||+||+++|+|+|||||+|||+||++|++||||++|+|||++.++|.....|++.|+|| |+|+||+||+
T Consensus 156 Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls-----~~g~c~~fd~ 230 (1061)
T COG3321 156 RISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFDA 230 (1061)
T ss_pred HHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC-----CCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccc--cccCCCCCCCcceeccccccc
Q 012867 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDA--YHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 389 ~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg--~~~t~P~p~g~g~~~a~~~~~ 451 (454)
++|||++|||+|++|||++++|+++||+||++|+|+++|+|| +++|+|++.+| ...|+++|
T Consensus 231 ~adG~v~geG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ--~~v~~~al 293 (1061)
T COG3321 231 DADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQ--ADVIREAL 293 (1061)
T ss_pred CCCCEEEeeeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHH--HHHHHHHH
Confidence 999999999999999999999999999999999999999999 47899888555 56666665
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=445.16 Aligned_cols=287 Identities=43% Similarity=0.711 Sum_probs=264.2
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccc--------cccCccccchhhhhhhH
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS--------FSTDGWVAPKLSKRMDK 234 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~--------fd~~~fi~~~~a~~mdp 234 (454)
.+++|+|||||+++|.|.++++||++|++|+++++++++|+...++..+++.|++ ||+++|+++++.+.|||
T Consensus 2 ~~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~fd~~~~i~~~~~~~~d~ 81 (424)
T PRK06333 2 NKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDR 81 (424)
T ss_pred CCCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCCCceEEEeccccccccccCChhHcCCHHHHhhcCH
Confidence 4689999999999999999999999999999999999988888888888888887 88888899999999999
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhh-hccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhh
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNEL-DKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAM 312 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~-~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~ 312 (454)
++++++.++++||+|+|++++ .+ +..++|||+|++.+++..+.+.+..+.. +...++|+.++..+.|..+++|++
T Consensus 82 ~~~l~~~aa~~Al~dAgl~~~---~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~ 158 (424)
T PRK06333 82 FILFAMAAAKEALAQAGWDPD---TLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSI 158 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCcc---ccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHH
Confidence 999999999999999999865 44 6689999999999988877776665543 445677888888889999999999
Q ss_pred hccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCC
Q 012867 313 DLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRD 391 (454)
Q Consensus 313 ~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~ad 391 (454)
.|||+||+++|+++|+||+.||++|+++|++|+||++||||+|.++++..+.+|..++.|+.. +.+|++.|||||.+++
T Consensus 159 ~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~~~ 238 (424)
T PRK06333 159 RYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRD 238 (424)
T ss_pred HhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999998899888899999999865 6678899999999999
Q ss_pred ceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 392 G~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
||++|||+++||||++++|++||++||++|+|++.++|++|++.|+|+++++.++|+++|+
T Consensus 239 G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~ 299 (424)
T PRK06333 239 GFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALR 299 (424)
T ss_pred CeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999884
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=511.35 Aligned_cols=279 Identities=24% Similarity=0.406 Sum_probs=244.8
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCccc--ccccCCCC-----------ccccccccc--ccccCcc-ccc
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSF-----------PTKIAAEIK--SFSTDGW-VAP 226 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~--~~~~~~~~-----------~~~~~g~i~--~fd~~~f-i~~ 226 (454)
++++||||||||+||+|.++++||++|.+|+++|+++ +||+.+.| +.+++++++ +||+.+| |+|
T Consensus 5 ~~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~FD~~~F~i~p 84 (2582)
T TIGR02813 5 KDMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPP 84 (2582)
T ss_pred CCCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccCCCHhhcCCCH
Confidence 4578999999999999999999999999999999998 47776543 456677776 5999999 999
Q ss_pred hhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhH---------------------HHHHH
Q 012867 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY---------------------DAIEA 285 (454)
Q Consensus 227 ~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~---------------------~~~~~ 285 (454)
++++.|||+|||+|+++|+||+||||.+ .++++|||||+|++.+++.... +....
T Consensus 85 ~ea~~mDpqqrl~L~~a~eALedAG~~~----~~~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (2582)
T TIGR02813 85 NILELTDISQLLSLVVAKEVLNDAGLPD----GYDRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEM 160 (2582)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhCCCCC----CCCCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhhHHH
Confidence 9999999999999999999999999974 4677899999999876542110 01111
Q ss_pred H----HHhhhccCceeccccccccchhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeee
Q 012867 286 L----RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (454)
Q Consensus 286 l----~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~ 361 (454)
+ ...+...++..+++.+.|++++|||+.|||+||+++|++|||||++|||+||++|++|+||+|||||+|..++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~ 240 (2582)
T TIGR02813 161 LIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPF 240 (2582)
T ss_pred hhhhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHH
Confidence 1 112234566678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeeehHHhHHHhhccceeeeeecCcceecccc--ccCCCCCC
Q 012867 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--HMTEPHPD 439 (454)
Q Consensus 362 ~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~--~~t~P~p~ 439 (454)
.+..|+++++|| +++.|||||.++|||++|||+|+||||++++|++|||+|||+|+|+++|+||+ ++|+|+++
T Consensus 241 ~~~~fs~~~~lS-----~~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP~~~ 315 (2582)
T TIGR02813 241 MYMSFSKTPAFT-----TNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPE 315 (2582)
T ss_pred HHHHHHhccCcC-----CCCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCCCHH
Confidence 999999999999 88999999999999999999999999999999999999999999999999997 88998887
Q ss_pred Ccceecccccccc
Q 012867 440 GDIMLGGVQDYHC 452 (454)
Q Consensus 440 g~g~~~a~~~~~~ 452 (454)
|| .++|+++|+
T Consensus 316 gq--~~~i~~Al~ 326 (2582)
T TIGR02813 316 GQ--AKALKRAYD 326 (2582)
T ss_pred HH--HHHHHHHHH
Confidence 76 688988884
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=430.18 Aligned_cols=283 Identities=47% Similarity=0.751 Sum_probs=261.8
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
+++|+|||||+++|.|.+++++|++|..|+++|..+++|+...++.++.+++++| +.++.+++.++||+.++|.+.++
T Consensus 2 ~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~d~~~~~a~~Aa 79 (412)
T COG0304 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQIAKKERRFMDRFSQLAVVAA 79 (412)
T ss_pred CceEEEecceeeecccCCHHHHHHHHhcCCCCCCccccccccCCCCccccccccc--ccccchHHhhcccHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999998 44567788889999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-Hhhhc-cCceeccccccccchhHHhhhccCcCCCc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKK-MNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~-~~~~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (454)
.+||+|||+... ..... |+||++|++.+++...+.....+. .+.++ ++|+.++..+.|+.++.++++||++||++
T Consensus 80 ~eAl~dAgl~~~--~~~~~-r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~g~~G~~~ 156 (412)
T COG0304 80 VEALEDAGLDNE--LNVDM-RVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNY 156 (412)
T ss_pred HHHHHHcCCCcc--cccCc-cEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHhCCCCCcC
Confidence 999999999832 12233 999999999999998765333333 34444 89999999999999999999999999999
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
++.+||+||..||..|++.|+.|++|+|||||+|..+++..+.+|..+++||+.|++|...|||||+++||||+|||+|+
T Consensus 157 ~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~RdGfv~gEGag~ 236 (412)
T COG0304 157 TPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGA 236 (412)
T ss_pred ChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCCCCCEEEecceeE
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred eehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 402 lvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
+|||++++|++||++||++|.|++.+.|++|+|.|+|+|.|..++|+.+.
T Consensus 237 lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL 286 (412)
T COG0304 237 LVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAAL 286 (412)
T ss_pred EEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998775
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-53 Score=434.45 Aligned_cols=279 Identities=26% Similarity=0.433 Sum_probs=255.0
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
++|||||||+++|+|.++++||++|.+|+++|+++++|+...++..+.+++++||+++++++++.++||+++++++.+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 80 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAAD 80 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988888899999999998888999999999999999999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv 323 (454)
+||+|||++++ .+++.|+||++|++.+++...++.+..+.. +....+++.++..+.+..+++|++.||++||+++|
T Consensus 81 eAl~dAGl~~~---~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~ti 157 (399)
T cd00832 81 WALADAGVDPA---ALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVV 157 (399)
T ss_pred HHHHHcCCCcc---ccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999875 567789999999999998877766665543 45566777777778888999999999999999999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+++|+||+.||++|+++|++|+ |++||||+|..++|..+..|..++.|+. +.+|++.|||||.+++||++|||+++||
T Consensus 158 ~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~-~~~p~~~~rPFd~~~~G~~~gEGa~~lv 235 (399)
T cd00832 158 VAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST-SDDPARAYLPFDAAAAGYVPGEGGAILV 235 (399)
T ss_pred cchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC-CCCCCCCcCCCcCCCCCEeeeceEEEEE
Confidence 9999999999999999999999 9999999999999999999999999985 4457889999999999999999999999
Q ss_pred hHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 404 Le~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
||++++|++||++||++|+|+++++|+++.+. .++++.++|++++
T Consensus 236 Le~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~---~~~~~~~a~~~al 280 (399)
T cd00832 236 LEDAAAARERGARVYGEIAGYAATFDPPPGSG---RPPGLARAIRLAL 280 (399)
T ss_pred EeeHHHHHHCCCeEEEEEEeEEEcCCCCCCCC---CHHHHHHHHHHHH
Confidence 99999999999999999999999999998642 4778888888876
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=433.93 Aligned_cols=284 Identities=43% Similarity=0.696 Sum_probs=262.3
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|++|+|||||+++|.|.++++||++|++|+++|+++++|+...++..+++++++||+..|+++++.++||+++++++.++
T Consensus 1 m~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998889889999999999998899999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||++++ .++..++||++|+..+++...++.+..+. .+...++|+.++..+.|+++++|++.||++||+++
T Consensus 81 ~~AL~dAGl~~~---~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~~ 157 (406)
T PRK08439 81 REAMKDAGFLPE---ELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLS 157 (406)
T ss_pred HHHHHHcCCCcc---cCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCCCCccc
Confidence 999999999875 66778999999999888877666554443 35566788888999999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
++++|+|++.||++|+++|++|++|++||||+|..++|..+.+|..+++|+..+.+|+..|||||.+++||++|||++++
T Consensus 158 ~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa~~l 237 (406)
T PRK08439 158 SVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGAL 237 (406)
T ss_pred cccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCceEEE
Confidence 99999999999999999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++++|++||++||++|+|++.++|++|++.|+| .++.++|+++++
T Consensus 238 vLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~--~~~~~a~~~al~ 285 (406)
T PRK08439 238 VLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAP--EGPLRAMKAALE 285 (406)
T ss_pred EEccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCH--HHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 456778887763
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=432.19 Aligned_cols=281 Identities=37% Similarity=0.562 Sum_probs=252.2
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
++|||||||+++|.|.++++||++|++|+++|+++++|+...++..+.+++ +||+..+++++..++|++..++++.++.
T Consensus 2 ~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNV-KLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCcccccCCCCceEEEc-CCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999888989999887 4888777888888999999999999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH--hhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
+||+|||+.++ .+...++|||+|++.+++....+.+..+.. +...++|+.++..+.|.++++|+++||++||+++
T Consensus 81 ~Al~dAGl~~~---~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~Gp~~t 157 (406)
T PRK07967 81 QAIADAGLSEE---QVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYS 157 (406)
T ss_pred HHHHHcCCCCc---cCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCCCccc
Confidence 99999999764 567789999999998877665554444432 4456788888999999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCCceeeecCcee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
|+++|+||+.||++|+++|++|+||+|||||+|. +++..+..|..++.|+.. +.+|++.|||||.+++||++|||+++
T Consensus 158 vs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGaa~ 236 (406)
T PRK07967 158 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGV 236 (406)
T ss_pred cccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceEEE
Confidence 9999999999999999999999999999999997 556666779999999865 56789999999999999999999999
Q ss_pred eehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 402 lvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+|||++++|++||++||++|+|+++++|++|++.| ++.++.++|+++++
T Consensus 237 lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~p--~~~~~~~a~~~Al~ 285 (406)
T PRK07967 237 VVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALA 285 (406)
T ss_pred EEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCCC--CHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 57777888888763
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=432.99 Aligned_cols=282 Identities=30% Similarity=0.513 Sum_probs=255.0
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCccccccc--CCCCccccccccc-ccccCccccchhhhhhhHHHHHHH
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIK-SFSTDGWVAPKLSKRMDKFMLYLL 240 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~--~~~~~~~~~g~i~-~fd~~~fi~~~~a~~mdp~~rl~l 240 (454)
+++|||||||+++|.|.++++||++|.+|+++|++++.+. ...++.++++.+. +||+ +++++++++|||++++++
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d~--~~~~~~~~~~d~~~~~~l 88 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDH--QLTRVELRRMSYLQRMST 88 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCccc--cCCHHHHhhccHHHHHHH
Confidence 5899999999999999999999999999999999987653 3346677777774 4553 478999999999999999
Q ss_pred HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCC
Q 012867 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (454)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp 319 (454)
.++++||+|||+. ..++.|+||++|++.++.....+.+..+.. ++...+++.++..+.|..+.++++.+|++||
T Consensus 89 ~aa~~AledAg~~-----~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G~ 163 (418)
T PRK07910 89 VLGRRVWENAGSP-----EVDTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAG 163 (418)
T ss_pred HHHHHHHHHcCCC-----CCCcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCCC
Confidence 9999999999985 356789999999999998877776666543 4556778888888999999999999999999
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhh-hhcccCCCCCCCCCccCCCCceeeecC
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRA-LSQRNNDPTKASRPWDINRDGFVMGEG 398 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~-Ls~~~~~p~~~~rpFd~~adG~v~GEG 398 (454)
+++|+++|+|++.||++|+++|++|+||+|||||+|..++|..+.+|.++++ |+..+++|++.|||||.+++||++|||
T Consensus 164 ~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG 243 (418)
T PRK07910 164 VITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243 (418)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence 9999999999999999999999999999999999999999999999999999 887677799999999999999999999
Q ss_pred ceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 399 aaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++++|||++++|+++|++||++|+|+++++||+|++.|+|.++++.++|+++|+
T Consensus 244 aa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~ 297 (418)
T PRK07910 244 GALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIE 297 (418)
T ss_pred EEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998874
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=429.30 Aligned_cols=286 Identities=48% Similarity=0.804 Sum_probs=265.6
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|++|+|||||+++|.|.++++||++|++|+++++++++|+...++..++++|++||++.|+++++.++|||+++|+++++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||++++ ++++.++|||+|++.+++...++.+..+.+ +....+|+.++....|..++++++.||++||+++
T Consensus 81 ~~Al~dAGl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (411)
T PRK07314 81 KQAVEDAGLEIT---EENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHS 157 (411)
T ss_pred HHHHHHcCCCcc---cCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCCCcccc
Confidence 999999999876 677889999999999988887777766654 3455677778888889999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+||+.||+.|+++|++|+||++||||+|.+++|..+.+|..+++|+.++.+|+..|+|||.++||+++|||++++
T Consensus 158 v~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGAaav 237 (411)
T PRK07314 158 IVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGAGIL 237 (411)
T ss_pred chhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceEEEE
Confidence 99999999999999999999999999999999998899888999999999876667889999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++++|+++|++||++|+|++.++|+++++.|++.++++.++|+++|+
T Consensus 238 vL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~ 287 (411)
T PRK07314 238 VLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALK 287 (411)
T ss_pred EEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888889988774
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=425.67 Aligned_cols=282 Identities=33% Similarity=0.439 Sum_probs=251.4
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccC-CCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~-~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
++|||||||+++|.|.++++||++|.+|+++|+++++|+. ..++.++++.+++||...++++++.++||+.+++++.++
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~aa 81 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRAS 81 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999998875 567889999999999887788899999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||+... ....+.|+||++|++.++....+++...+.. ....+++..+...++|.++++|++.||++||+++
T Consensus 82 ~~Al~dAGl~~~--~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~Gp~~t 159 (405)
T PRK09116 82 ELALEDAGLLGD--PILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIP 159 (405)
T ss_pred HHHHHHcCCCCc--cccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCCCccc
Confidence 999999999532 1345679999999999888777666665543 3345677777778889999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|++.||++|+++|++|+||+|||||+|. +++.....|..++.++..+..|+..|||||++++||++|||++++
T Consensus 160 i~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gEGa~~~ 238 (405)
T PRK09116 160 TSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGEGAGTL 238 (405)
T ss_pred ccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeeccEEEE
Confidence 9999999999999999999999999999999998 678778889999888866667889999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
|||++++|++||++||++|+|+++++|++|++.|++. ++.++|++++
T Consensus 239 vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p~~~--~~~~ai~~AL 285 (405)
T PRK09116 239 VLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAE--TMQIAMELAL 285 (405)
T ss_pred EEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCCCHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999988654 4567777665
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=421.59 Aligned_cols=285 Identities=40% Similarity=0.685 Sum_probs=250.0
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccC--------------CCCccccccccc------ccccCc
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--------------TSFPTKIAAEIK------SFSTDG 222 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~--------------~~~~~~~~g~i~------~fd~~~ 222 (454)
..++|||||||+++|+|.++++||++|++|+++|++++++++ ..++.++++.++ +||+.+
T Consensus 4 ~~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 83 (437)
T PLN02836 4 PTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEEL 83 (437)
T ss_pred CCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHH
Confidence 457899999999999999999999999999999999976543 234556666664 577776
Q ss_pred cccchhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceecccc
Q 012867 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFA 301 (454)
Q Consensus 223 fi~~~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 301 (454)
|.. .+++|+..+++++++++||+|||+.+. +....+++|||+|++.+++..+.+.+..+.+ ....++|+.++..
T Consensus 84 ~~~---~~~~~~~~~~~~~aa~~Al~dAg~~~~--~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 158 (437)
T PLN02836 84 WLN---SRSSSRFIGYALCAADEALSDARWLPS--EDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRI 158 (437)
T ss_pred hcc---ccccCHHHHHHHHHHHHHHHHcCCCcc--cccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhh
Confidence 633 457899999999999999999999753 1235679999999998888776666554443 3456788888999
Q ss_pred ccccchhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCC
Q 012867 302 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPT 380 (454)
Q Consensus 302 ~~~~~a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~ 380 (454)
+.|+++++|++.||++||+++|+++|+||+.||++|+++|++|+||++||||+|..+++..+.+|..++.++.. +.+|+
T Consensus 159 ~~n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~ 238 (437)
T PLN02836 159 LINMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPT 238 (437)
T ss_pred cccHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998899889999999998854 45678
Q ss_pred CCCCCccCCCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 381 KASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 381 ~~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
..|||||.+++|+++|||++++|||++++|+++|++||++|+|+++++|++|++.|+++++++.++|+++|+
T Consensus 239 ~~~~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~ 310 (437)
T PLN02836 239 EASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQ 310 (437)
T ss_pred cccCCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999998884
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=416.73 Aligned_cols=285 Identities=47% Similarity=0.825 Sum_probs=264.4
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
++|+|||||+++|.|.++++||++|++|+++++++++|+...++..+++++++||+++|+++++.++|||++++++++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAK 80 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988898899999999999999999999999999999999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv 323 (454)
+||+|||+.++ .++..++|||+|++.+++...++++..+.+ +...++|+.++..+.|.++++|++.||++||+++|
T Consensus 81 ~Al~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~g~~~~v 157 (407)
T TIGR03150 81 EAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAV 157 (407)
T ss_pred HHHHhcCCCcc---cCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCCCCccccc
Confidence 99999999876 677889999999999888877776665543 44557788788888999999999999999999999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+++|+||+.||++|+++|++|+||++||||+|.+++|..+..|...+.++..+.+|...|+|||.+++|+++|||++++|
T Consensus 158 ~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~g~~~gEGAaalv 237 (407)
T TIGR03150 158 VTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237 (407)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCCcEEEeceEEEEE
Confidence 99999999999999999999999999999999989998888899999998767778889999999999999999999999
Q ss_pred hHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 404 Le~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
||++++|+++|++||++|+|++.++|+++++.|++.+.++.++|+++|+
T Consensus 238 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~ 286 (407)
T TIGR03150 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALK 286 (407)
T ss_pred EeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888999998874
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-49 Score=406.21 Aligned_cols=282 Identities=23% Similarity=0.315 Sum_probs=244.6
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCC--------CCcccccccccccccCccccchhhhhhhHH
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT--------SFPTKIAAEIKSFSTDGWVAPKLSKRMDKF 235 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~--------~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~ 235 (454)
|++|||||||+++|.|.++++||++|++|+++|+++++|+.. ..+..+++++++|++..+++++..++|++.
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELDSLALPERLDAKLLRRASLS 80 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccccccccCCCceEEEEeCCCChhhcCCHHHhhcCCHH
Confidence 478999999999999999999999999999999999887653 334567888998888777888889999999
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
+++++.++++||+|||+. ..+.+++|||+|++.+........+..+.++.....|+.....+.+..+++|++.||
T Consensus 81 ~~lal~Aa~eAl~dAgl~-----~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 155 (410)
T PRK07103 81 AQAALAAAREAWRDAALG-----PVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFG 155 (410)
T ss_pred HHHHHHHHHHHHHhcCcC-----CCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhC
Confidence 999999999999999995 346789999999887666555555444433344456665666677788999999999
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc--cCCCCCCCCCccCCCCce
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR--NNDPTKASRPWDINRDGF 393 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~--~~~p~~~~rpFd~~adG~ 393 (454)
++||+++|+++|+|++.||+.|+++|++|+||+|||||++..+++..+.+|..++.|+.. +.+|+..|||||.+++|+
T Consensus 156 l~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG~ 235 (410)
T PRK07103 156 IRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDGF 235 (410)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCCe
Confidence 999999999999999999999999999999999999999988899999999999988753 456889999999999999
Q ss_pred eeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 394 v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++|||++++|||++++|+++|++||++|+|+++++|+++++.|++. ++.++|+++|+
T Consensus 236 v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~--~~~~a~~~Al~ 292 (410)
T PRK07103 236 IYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLE--GEMRVIRAALR 292 (410)
T ss_pred eEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCCCCCHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998766554 45678877764
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=398.37 Aligned_cols=285 Identities=48% Similarity=0.833 Sum_probs=263.9
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
++|+|||||+++|+|.+.++||++|++|+++++++++|+...++..+++.+++|++.+.+++++.+.|||+++|++++++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAE 80 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999988888888899999999998866999999999999999999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv 323 (454)
+||+|||++++ .++..++|||+|++.+++...++++..+.. ++..++|+.++....+..+++|++.||++||+++|
T Consensus 81 ~AL~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v 157 (406)
T cd00834 81 EALADAGLDPE---ELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTV 157 (406)
T ss_pred HHHHHcCCCcc---cCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhCCCCccccc
Confidence 99999999876 677899999999999998888877776654 44557788888888899999999999999999999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+++|+|++.||+.|+++|++|+||.+||||+|..++|..+..|..+++++..+.+|++.|+|||.+++|+++|||++++|
T Consensus 158 ~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~~g~~~geGA~a~v 237 (406)
T cd00834 158 STACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCCCCEeeeccEEEEE
Confidence 99999999999999999999999999999999988899999999999998765567789999999999999999999999
Q ss_pred hHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 404 Le~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
||+.++|+++|++||++|+|++.++|+++++.|+|.+.++.++|+++|+
T Consensus 238 L~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~ 286 (406)
T cd00834 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALA 286 (406)
T ss_pred EecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988774
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=395.68 Aligned_cols=275 Identities=35% Similarity=0.526 Sum_probs=247.7
Q ss_pred ceEEEecccccccCCCC---chhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhh---hHHHHH
Q 012867 165 KRVVVTGMGLVSPLGHE---PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRM---DKFMLY 238 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~---~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~m---dp~~rl 238 (454)
.+|||||||+++|.|.+ +++||++|.+|+++|+++++|+ ..++..+++.+++|+ +++++.+++ ||+++|
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~-~~~~~~~~g~i~~~~----~~~~~~~~~~~~~~~~~l 75 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGD----IPGWDAKRTGIVDRTTLL 75 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc-ccCCccEEEEccCCC----cCHHHHHhccCCCHHHHH
Confidence 37999999999999999 9999999999999999998887 567778888888877 567788888 999999
Q ss_pred HHHhcchhhhcCCccHHHHhh-hhccccceeeecccCcchhhHHHHHHHHHhhhccCceecccccc--ccchhHHhhhcc
Q 012867 239 LLTAGKKALADGGITEDVMNE-LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT--NMGSAMLAMDLG 315 (454)
Q Consensus 239 ~l~aa~eALedAG~~~~~~~~-~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~a~~is~~~g 315 (454)
+++++++||+|||++++ . ++..++||++|++.+++...+..+..+. +..+++.++..+. |.++++|++.||
T Consensus 76 ~~~aa~~Al~dAGl~~~---~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~is~~~g 149 (407)
T cd00828 76 ALVATEEALADAGITDP---YEVHPSEVGVVVGSGMGGLRFLRRGGKLDA---RAVNPYVSPKWMLSPNTVAGWVNILLL 149 (407)
T ss_pred HHHHHHHHHHhCCCCcc---ccCCccCeEEEEeeccCCHHHHHHHHHHHh---hccCCcccchhccccchHHHHHHHHhC
Confidence 99999999999999865 5 6778999999999988876666554433 3457777777777 999999999999
Q ss_pred C-cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCcee
Q 012867 316 W-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (454)
Q Consensus 316 l-~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v 394 (454)
+ +||+++|+++|+|++.||++|+++|++|+||++||||+|.++ |..+.+|..++.++.....|.+.|+|||.+++||+
T Consensus 150 l~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~G~~ 228 (407)
T cd00828 150 SSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFV 228 (407)
T ss_pred cCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCCCCCCCcccCCCcCCCCcEE
Confidence 9 999999999999999999999999999999999999999977 88899999999998665557789999999999999
Q ss_pred eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 395 ~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+|||++++|||++++|++||++||++|+|++.++|+++++.|. ++.++.++|+++|+
T Consensus 229 ~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~ 285 (407)
T cd00828 229 EAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALA 285 (407)
T ss_pred eecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887 88888999988874
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=388.32 Aligned_cols=273 Identities=41% Similarity=0.708 Sum_probs=243.1
Q ss_pred ccccCCCCchhHHhhhhccccCCccccccc----------------CCCCccccccccc--ccccCccccchhhhhhhHH
Q 012867 174 LVSPLGHEPDVFYNNLLEGVSGISEIETFD----------------CTSFPTKIAAEIK--SFSTDGWVAPKLSKRMDKF 235 (454)
Q Consensus 174 ~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~----------------~~~~~~~~~g~i~--~fd~~~fi~~~~a~~mdp~ 235 (454)
+++|.|.++++||++|++|+++|+++++|+ ...++..++++|+ +||+.+|... .++|++
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~f~~~~~~~~---~~~~~~ 77 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSEFDPSDFAPT---KRESRA 77 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcccCChhHcCCc---ccCCHH
Confidence 478999999999999999999999998776 4456778888887 6888777322 235899
Q ss_pred HHHHHHhcchhhhcCCcc-HHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhh
Q 012867 236 MLYLLTAGKKALADGGIT-EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~-~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
++|++.++++||+|||+. ++ .++..++||++|++.+++....+.+..+.+ +...++++.++..+.|.++++|++.
T Consensus 78 ~~l~~~aa~~Al~dAGl~~~~---~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 78 THFAMAAAREALADAKLDILS---EKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred HHHHHHHHHHHHHHcCCCccc---ccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999997 54 566789999999999888766665555443 4556778889999999999999999
Q ss_pred ccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCCc
Q 012867 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDG 392 (454)
Q Consensus 314 ~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~adG 392 (454)
|||+||+++|+++|+||+.||++|+++|++|+||++||||+|..++|..+.+|.+++.++.. +.+|+..|||||++++|
T Consensus 155 ~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~~G 234 (421)
T PTZ00050 155 HKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAG 234 (421)
T ss_pred hCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999998899889999999998854 45688899999999999
Q ss_pred eeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 393 ~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|||++++|||++++|+++|++||++|+|+++++|++|++.|+|++.++.++|+++|+
T Consensus 235 ~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~ 294 (421)
T PTZ00050 235 FVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALK 294 (421)
T ss_pred EeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998885
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=376.63 Aligned_cols=261 Identities=33% Similarity=0.513 Sum_probs=222.6
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|++|||||||+++|.|. +++||++|++|+++|++++.|+. ++....+.+ .+ .+ ..++ ++...++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~--~~~~~~~~~-~~------~~---~~~~---~~~~~a~ 64 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE--LPPLPLGLI-GN------QP---SSLE---DLTKTVV 64 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc--cccccceee-cc------cc---cccc---HHHHHHH
Confidence 57999999999999999 99999999999999999887752 111111111 00 01 1233 3556889
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhh----hccCceeccccccccchhHHhhhccCcCC
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY----KKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~a~~is~~~gl~Gp 319 (454)
++||+|+|++++ .+|+||++|++.++...+++++..+.++. ...+|..++..++|.+++++++.||++||
T Consensus 65 ~~Al~dagl~~~------~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~Gp 138 (381)
T PRK05952 65 TAALKDAGLTPP------LTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGP 138 (381)
T ss_pred HHHHHhcCCCCC------CCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCCc
Confidence 999999999742 37899999999998877777666554321 24567777888999999999999999999
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
+++|+++|+||+.||.+|+++|+.|++|++||||+|..++|..+.+|..+++|+ . ..|||||.+++||++|||+
T Consensus 139 ~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls-----~-~~~rPfd~~r~G~v~gEGa 212 (381)
T PRK05952 139 VLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA-----K-TGAYPFDRQREGLVLGEGG 212 (381)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcC-----C-CCCCCCCCCCCCccccccE
Confidence 999999999999999999999999999999999999989999999999999997 3 3599999999999999999
Q ss_pred eeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|||++++|+++|++||++|+|++.++|++|++.|+|+++++.++|+++|+
T Consensus 213 a~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~ 265 (381)
T PRK05952 213 AILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLA 265 (381)
T ss_pred EEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998874
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=374.38 Aligned_cols=269 Identities=23% Similarity=0.296 Sum_probs=218.2
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccch-hhhhhhHHHHHHHH
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPK-LSKRMDKFMLYLLT 241 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~-~a~~mdp~~rl~l~ 241 (454)
..++|||||||+++|.|.++++||++|.+|+++ ..++.++...++....+ ++|++.+++++ +.++||+.+++.+.
T Consensus 4 ~~~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~r~~~~a~~ 79 (398)
T PRK06519 4 QPNDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETFAPYPVHPLP---EIDWSQQIPKRGDQRQMETWQRLGTY 79 (398)
T ss_pred CCCCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccccCcCccccc---ccChhhcCCchhhhhccCHHHHHHHH
Confidence 357899999999999999999999999999998 33332222233333333 34444456566 77899999999999
Q ss_pred hcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHH------------HHHHH-HhhhccCceeccccccccchh
Q 012867 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA------------IEALR-ISYKKMNPFCVPFATTNMGSA 308 (454)
Q Consensus 242 aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~------------~~~l~-~~~~~~~~~~~~~~~~~~~a~ 308 (454)
++.+||+|||++.. ..+..|+||++|++.++....++. +..+. .++..++|+.++..++|..++
T Consensus 80 Aa~~Al~dAGl~~~---~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~ 156 (398)
T PRK06519 80 AAGLALDDAGIKGN---EELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAG 156 (398)
T ss_pred HHHHHHHHcCCCCC---CCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHH
Confidence 99999999999643 345679999999999887664432 11222 234567899999999999999
Q ss_pred HHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCC-cc
Q 012867 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRP-WD 387 (454)
Q Consensus 309 ~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rp-Fd 387 (454)
+|++.||++||+++|+++|+||+.||++|+++|++|+||++||||+|..++|..+..|..++.++. ..|+| ||
T Consensus 157 ~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ls~------~~~~p~~d 230 (398)
T PRK06519 157 NISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLK------GGWAPVWS 230 (398)
T ss_pred HHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCccCC------CCCCchhc
Confidence 999999999999999999999999999999999999999999999999899988999999999872 35666 56
Q ss_pred C---CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 388 I---NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 388 ~---~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
. +++||++|||+++||||++++|++||++|||+|+|++. |++ |+ .+.++.++|+++.
T Consensus 231 ~~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~--d~~----~~-~~~~~~~am~~AL 290 (398)
T PRK06519 231 RGGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVES--DRA----RR-APGDLEASLERLL 290 (398)
T ss_pred cCccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEee--cCC----CC-ChHHHHHHHHHHH
Confidence 5 69999999999999999999999999999999999964 433 22 2346777887765
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=354.56 Aligned_cols=235 Identities=41% Similarity=0.681 Sum_probs=189.6
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccc-cccCCCC---cccccccccc----------cccCcc-ccchh
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSF---PTKIAAEIKS----------FSTDGW-VAPKL 228 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~~---~~~~~g~i~~----------fd~~~f-i~~~~ 228 (454)
|++|||||||+++|+|.++++||++|.+|++++.+++ +|+...+ +....+.++. ||..++ +++++
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPERWDPSDYYDPPSRVAGEIDDKKGGFIDDFDFDAYFFGIPPRE 80 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCSSSCHTTSTTSSCSEEECBSSSEESSSTTTCGGGTSTCHHHHH
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeeccccccccccccCCcccccccccccceeeecccccccccccchh
Confidence 6899999999999999999999999999999999887 6777766 4555565543 666666 78888
Q ss_pred hhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhcc-ccceeeecccCcchhhHHHHHHHHH-h--hhccCceeccccccc
Q 012867 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKS-KCGVLIGSGLGGMKVFYDAIEALRI-S--YKKMNPFCVPFATTN 304 (454)
Q Consensus 229 a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~-~vGV~vG~~~g~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~ 304 (454)
.++||+++++++.++++||+|||+.++ .++.. ++|||+|++.+++ +.+..+.. . +....|..+...++|
T Consensus 81 ~~~~~~~~~~~l~aa~~Al~dAg~~~~---~~~~~~r~gv~~G~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T PF00109_consen 81 ARRMDRQSRLALAAAREALEDAGLDPD---DLDGERRVGVFVGSSSGDY----EFYRALDEDGETPRDVSPWFVPNTLPN 153 (254)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHTSTGG---GHTGGGTEEEEEEESSSHH----HHHHHHHHHTTCGGGSHTTHHHHHSTT
T ss_pred hhhhhhhhhHHHHHhhhhccccccccc---ccccccceeeccccccccc----cccccccccccccccccccccCccccc
Confidence 999999999999999999999999875 44555 5999999998844 22333322 2 344555444556899
Q ss_pred cchhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCC
Q 012867 305 MGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (454)
Q Consensus 305 ~~a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~r 384 (454)
.++++|++.||++||+++|+++|+||+.||+.|+++|++|++|+|||||+|..++|..+.+|.++++++ +++.|+
T Consensus 154 ~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s-----~~~~~~ 228 (254)
T PF00109_consen 154 SAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALS-----ADGPCR 228 (254)
T ss_dssp HHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB------TTSGGG
T ss_pred ccccchhhhcCCCCccccccccccccccccchhcccccccccccccccccccccccccccccccccccc-----cccccc
Confidence 999999999999999999999999999999999999999999999999999889999999999999887 557899
Q ss_pred CccCCCCceeeecCceeeehHHhHHH
Q 012867 385 PWDINRDGFVMGEGAGVLLLEELEHA 410 (454)
Q Consensus 385 pFd~~adG~v~GEGaaalvLe~l~~A 410 (454)
|||.+++||++|||+|+||||++++|
T Consensus 229 pf~~~~~G~v~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 229 PFDPFADGFVLGEGAGALVLERLEHA 254 (254)
T ss_dssp STBTTB-SB-BB-EEEEEEEEEHHHH
T ss_pred ccCCCCCCEEEECceEEEEEEEhhhC
Confidence 99999999999999999999999987
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=366.43 Aligned_cols=280 Identities=31% Similarity=0.370 Sum_probs=233.9
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
...+|+|||||+++|.|.++++||++|++|+++|+++++|+...+..++++.++.|+.. ....+++.+++.+.+
T Consensus 9 ~~~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~a 82 (425)
T PRK06501 9 GRPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPES------PFGASALSEALARLA 82 (425)
T ss_pred CCcCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccc------cccccCHHHHHHHHH
Confidence 34679999999999999999999999999999999999999888888999988643322 223466788999999
Q ss_pred cchhhhcCCccHHHHh-----------hhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHH
Q 012867 243 GKKALADGGITEDVMN-----------ELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAML 310 (454)
Q Consensus 243 a~eALedAG~~~~~~~-----------~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~i 310 (454)
+++||+|||+.+.... ...+.+++++.+....... .+..+.. ...+..+..+.....+..+++|
T Consensus 83 a~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 158 (425)
T PRK06501 83 AEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAP----SYDRLLRAARGGRFDALHERFQFGSIADRL 158 (425)
T ss_pred HHHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCccHH----HHHHHHhhcCcccCChhhhhhcccHHHHHH
Confidence 9999999999532100 0124577888877654322 1222221 1222223335555677889999
Q ss_pred hhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCC
Q 012867 311 AMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (454)
Q Consensus 311 s~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~a 390 (454)
++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|..+++..+..|..++.|+..++.|++.|||||.++
T Consensus 159 ~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r 238 (425)
T PRK06501 159 ADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDR 238 (425)
T ss_pred HHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999877777889999999999
Q ss_pred CceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 391 dG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+||++|||++++|||++++|+++|++||++|.|++.++|++|.+.|+|+++++.++|+++++
T Consensus 239 ~G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~AL~ 300 (425)
T PRK06501 239 DGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALA 300 (425)
T ss_pred CCeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988774
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=365.86 Aligned_cols=274 Identities=27% Similarity=0.468 Sum_probs=238.3
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccc--cccCCCC----------cccccccccc---cccCcc-ccchh
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSF----------PTKIAAEIKS---FSTDGW-VAPKL 228 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~--~~~~~~~----------~~~~~g~i~~---fd~~~f-i~~~~ 228 (454)
++|||||||+++|+|.++++||++|.+|++++++++ +|+...+ +..+++.+++ ||+.+| +++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHHH
Confidence 479999999999999999999999999999999985 5654432 4556677765 677767 89999
Q ss_pred hhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchh
Q 012867 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (454)
Q Consensus 229 a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~ 308 (454)
.+.||++++|+++++++||+|||++++ .++..++||++|+..+++.. ........++++.+.....+..++
T Consensus 81 ~~~~~~~~~l~~~aa~~AL~dAgl~~~---~~~~~~~gv~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~ 151 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGYSPE---SLAGSRTGVFVGASSSDYLE------LLARDPDEIDAYAATGTSRAFLAN 151 (421)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCch---hcCCCCceEEeCcCHHHHHH------HHhhcccccCcccccCcchHHHHH
Confidence 999999999999999999999999876 56788999999998663322 111222346777788888888999
Q ss_pred HHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC
Q 012867 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (454)
Q Consensus 309 ~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~ 388 (454)
++++.+|++||+++|+++|+|++.||+.|+++|++|++|++||||+|.++++..+..|..++.++ +++.|+|||.
T Consensus 152 ~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~~ 226 (421)
T cd00833 152 RISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPFDA 226 (421)
T ss_pred HHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC-----CCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888888898888887 7778999999
Q ss_pred CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 389 ~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|+++|||++++|||++++|+++|++||++|+|++.++|+++...+.|.+.++.++|+++|+
T Consensus 227 ~~~g~~~geGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~ 290 (421)
T cd00833 227 DADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYA 290 (421)
T ss_pred CCCCeeeeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998766666777888888888774
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=362.52 Aligned_cols=272 Identities=25% Similarity=0.425 Sum_probs=236.5
Q ss_pred EEEecccccccCCCCchhHHhhhhccccCCcccc--cccCCCC------------ccccccccc---ccccCcc-ccchh
Q 012867 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSF------------PTKIAAEIK---SFSTDGW-VAPKL 228 (454)
Q Consensus 167 IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~--~~~~~~~------------~~~~~g~i~---~fd~~~f-i~~~~ 228 (454)
|+|||||+++|.|.++++||++|.+|++++++++ +|+...+ +...++.++ +||+..| +++++
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~~ 80 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPRE 80 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHHH
Confidence 7999999999999999999999999999999984 6765442 344555443 5888888 99999
Q ss_pred hhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchh
Q 012867 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (454)
Q Consensus 229 a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~ 308 (454)
.++||++++|+++++.+||+|||++++ .++++++|||+|+..+++ ...+.......+++.++..+.+..++
T Consensus 81 ~~~~~~~~~l~~~aa~~Al~dAGl~~~---~id~~~~gv~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~ 151 (424)
T smart00825 81 AEAMDPQQRLLLEVAWEALEDAGIDPE---SLRGSRTGVFVGAMSSDY------AELLARDPEDIEGYAATGTARSFIAN 151 (424)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCChh---HcCCCCCEEEEEEcHHHH------HHHHhhCccccchhhhccchhHHHHH
Confidence 999999999999999999999999876 667789999999885433 22222344556677777777888999
Q ss_pred HHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC
Q 012867 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (454)
Q Consensus 309 ~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~ 388 (454)
+|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|..+++..+..|...+.++ +++.|+|||.
T Consensus 152 ~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~~ 226 (424)
T smart00825 152 RISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS-----PDGRCKTFDA 226 (424)
T ss_pred HHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC-----CCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888888888888887 7889999999
Q ss_pred CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 389 ~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|+++|||++++|||++++|+++|++||++|+|++.++|+++.....|++.++..+|+++++
T Consensus 227 ~~~g~~~geGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 290 (424)
T smart00825 227 DADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALA 290 (424)
T ss_pred CCCcccccceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998766666777777788887763
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=352.00 Aligned_cols=269 Identities=24% Similarity=0.401 Sum_probs=233.5
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccc-cccCCC--Cccccc--ccccccccCcc-ccchhhhhhhHHH
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTS--FPTKIA--AEIKSFSTDGW-VAPKLSKRMDKFM 236 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~--~~~~~~--g~i~~fd~~~f-i~~~~a~~mdp~~ 236 (454)
.+++|||.||+.++|..+++++||++|.+|.+.+++-+ +|...- +|.+.+ -++..||..|| ..+|++..||||.
T Consensus 9 ~~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~rrW~~G~ygLP~r~gKlKdL~kFDa~ff~vh~KQa~~MDPq~ 88 (2376)
T KOG1202|consen 9 KQEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKRSGKLKDLNKFDAGFFGVHPKQANTMDPQL 88 (2376)
T ss_pred cCCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcccccccccCCchhhcchhhhhhhcccccCcCcccccccCHHH
Confidence 47899999999999999999999999999999998865 454322 232222 13556999999 9999999999999
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
||+|++.|||+-||||+|. .++++++|||+|.+..+..... ...+.....+...+....|.++||||.|++
T Consensus 89 RlLLE~t~EAivDaGiNP~---~LRGs~tGv~vg~s~seTs~~~------~~dp~t~~Gy~mtgc~raMfaNRiSytFDf 159 (2376)
T KOG1202|consen 89 RLLLEATWEAIVDAGINPD---DLRGSRTGVFVGVSGSETSGAL------SQDPDTVNGYSMTGCVRAMFANRISYTFDF 159 (2376)
T ss_pred HHHHHHHHHHHHhCCCChh---hcCcccceeEEeecCccccccc------cCCCccccceeecccHHHHhhcceeEEEec
Confidence 9999999999999999998 8999999999999865543221 112334566777788889999999999999
Q ss_pred cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeee
Q 012867 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (454)
Q Consensus 317 ~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~G 396 (454)
+||++++||+|+|++.|+..|++.|+.|+||.+||+|+++.+.|.....|.++|||| |+|.||.||...|||++.
T Consensus 160 qGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls-----~dGsCkaFDeagnGY~Rs 234 (2376)
T KOG1202|consen 160 QGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS-----PDGSCKAFDEAGNGYCRS 234 (2376)
T ss_pred cCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC-----CCCcccchhccCCceeec
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCceeeehHHhHHHhhccceeeeeecCcceecccc---ccCCCCCCCcceeccccccc
Q 012867 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 397 EGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~---~~t~P~p~g~g~~~a~~~~~ 451 (454)
||+++++|.|.+.|++ +||.|.-...|.||+ ++|-|+. .-+.+.+++.|
T Consensus 235 eg~~avllqrk~~ArR----vYAtilnartNTDGfKEqGvTfP~G--~~Q~qLi~e~Y 286 (2376)
T KOG1202|consen 235 EGVVAVLLQRKSLARR----VYATILNARTNTDGFKEQGVTFPSG--DMQEQLIRETY 286 (2376)
T ss_pred CceEEEEEehhHHHHH----HHHHhhccccCCCchhhcCccCCCc--HHHHHHHHHHH
Confidence 9999999999999876 899999999999994 6887655 44456666666
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.47 Aligned_cols=215 Identities=39% Similarity=0.592 Sum_probs=199.6
Q ss_pred hhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHH
Q 012867 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAML 310 (454)
Q Consensus 232 mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~i 310 (454)
||+.+++.+.++++||+|||+. .+++|+||++|++.+++..+++.+..+. .+.+.++|+.++..+.|+++++|
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~------~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~i 74 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT------EKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHV 74 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC------CCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHH
Confidence 5788999999999999999975 2457899999999999988888776654 35567899999999999999999
Q ss_pred hhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCC
Q 012867 311 AMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDIN 389 (454)
Q Consensus 311 s~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~ 389 (454)
++.||++||+++|+++|+|++.||+.|+++|++|++|++||||+|..++|..+.+|..+++|+.. +++|++.|||||++
T Consensus 75 s~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~ 154 (342)
T PRK14691 75 SIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTA 154 (342)
T ss_pred HHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999864 56789999999999
Q ss_pred CCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 390 adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++||++|||++++|||++++|+++|++||++|+|++.++|++|++.|+|++.++.++|+++|+
T Consensus 155 r~G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~ 217 (342)
T PRK14691 155 RDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALR 217 (342)
T ss_pred CCCccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999884
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=330.46 Aligned_cols=266 Identities=26% Similarity=0.334 Sum_probs=217.7
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccc-cCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGV-SGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~-s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
|++|||||+|+++|.|.++++||++|++|+ ++|++++.|+.. ++. ..+.+++|+. .+++.+..+.+++..++.+.+
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 77 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVD-LPT-WVGEVVGVEL-PALPAALAAFDCRNNRLALLA 77 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccccc-CCe-EEEEecCccc-ccCCHHHHhcCCHHHHHHHHH
Confidence 578999999999999999999999999999 999999877643 433 3466777763 346666677788888887776
Q ss_pred cch---hhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhh-hccCceeccccccccchhHHhhhccCcC
Q 012867 243 GKK---ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (454)
Q Consensus 243 a~e---ALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~is~~~gl~G 318 (454)
+.+ |++|++- +.+.+|+||++|++.++....+..+..+.... ....++.++....+..+++|++.||++|
T Consensus 78 ~~~~~~a~~~~~~------~~~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~G 151 (392)
T PRK09185 78 LQQIEPAVEAAIA------RYGADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSLADFLRAYLGLSG 151 (392)
T ss_pred HHHHHHHHHhhcc------cCCCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhhhcccHHHHHHHHHhCCCC
Confidence 665 5555541 34567999999999998887777665543221 1224555667788899999999999999
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecC
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEG 398 (454)
|+++++++|+|++.||+.|+++|++|+||.+||||+|. +++..+..|..++.++ .+.|+|||.+++||++|||
T Consensus 152 p~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~------~~~~~Pfd~~~~G~~~gEG 224 (392)
T PRK09185 152 PAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS------PQPCRPFSANRDGINIGEA 224 (392)
T ss_pred CcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccC------CCccCCCcCCCCccceece
Confidence 99999999999999999999999999999999999997 5666667788777775 3689999999999999999
Q ss_pred ceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 399 aaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++++|||++ ++++ ++|.|++.++|++|++.|+|.+.++.++|+++++
T Consensus 225 aa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~ 271 (392)
T PRK09185 225 AAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALA 271 (392)
T ss_pred EEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999986 3444 4799999999999999999999988888888763
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-27 Score=236.28 Aligned_cols=240 Identities=16% Similarity=0.145 Sum_probs=176.6
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|++|+|+|+|+++|.|.+.++.|.+|+.|.+...+...++.... ..+.. ..++-++.....++..+|+..++
T Consensus 2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~-~~i~~-------~~~~~~~~~~~~~r~~~La~~Al 73 (348)
T PRK06147 2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGG-EWLIG-------APVPLPPPWRGPERLAEMAAPAI 73 (348)
T ss_pred CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCC-CceEe-------ecCcCCcccCchHHHHHHHHHHH
Confidence 56799999999999999999999999999877655443332100 00000 00111222334567788999999
Q ss_pred chhhhcCCc-cHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC--cCCC
Q 012867 244 KKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MGPN 320 (454)
Q Consensus 244 ~eALedAG~-~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl--~Gps 320 (454)
++||++++. ++ .+++++++....+.. ..+..+ ....+..++..+|+ +||+
T Consensus 74 ~~aL~~a~~~~~--------~~i~lil~~~~~~~~---------------~~~~~~----~~~~~~~~~~~lG~~~~~~~ 126 (348)
T PRK06147 74 AEALEGLPALDA--------SEAPLLLCVAEEERP---------------GRPPDL----EERLLRELEARLGLRLEPGS 126 (348)
T ss_pred HHHHHhcccccc--------cCCcEEEEeCchhcC---------------CCCcch----HHHHHHHHHHHhCCCCCCCc
Confidence 999999883 32 457888886532100 001001 11235667777887 5789
Q ss_pred cceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCce
Q 012867 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (454)
Q Consensus 321 ~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaa 400 (454)
++|.++|+|+++||..|+++|+.|++|.+||||+|.++.+..+..|...+.|.. +.+++||++|||++
T Consensus 127 ~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~------------~~~~~G~v~GEGA~ 194 (348)
T PRK06147 127 AVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT------------SQNSNGFIPGEAAA 194 (348)
T ss_pred ccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC------------CCCCCceeeeceEE
Confidence 999999999999999999999999999999999999887777777766655541 23789999999999
Q ss_pred eeehHHhHHHhhccceeeeeecCcceeccccccCCC-CCCCcceecccccccc
Q 012867 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP-HPDGDIMLGGVQDYHC 452 (454)
Q Consensus 401 alvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P-~p~g~g~~~a~~~~~~ 452 (454)
++|||++++|+++|++||+ .|++.+.|++|.+.+ .++|+++.++|+++++
T Consensus 195 a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~ 245 (348)
T PRK06147 195 AVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALA 245 (348)
T ss_pred EEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999 777787777666532 2478899999988763
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-26 Score=227.15 Aligned_cols=205 Identities=32% Similarity=0.481 Sum_probs=167.1
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
+++|+++++++||++||++++ ....+..+||+|++.+.+.... ..........|+.+.....+..+++|+..+
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~---~~~~~i~~ii~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 83 (332)
T cd00825 11 VSILGFEAAERAIADAGLSRE---YQKNPIVGVVVGTGGGSPRFQV----FGADAMRAVGPYVVTKAMFPGASGQIATPL 83 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCcc---ccCCCCEEEEEEeCCccHHHHh----hhhccccccCcchhhcccchHHHHHHHHHh
Confidence 678999999999999999853 3345667999999876653211 112233466788888888888999999999
Q ss_pred cCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCcee
Q 012867 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (454)
Q Consensus 315 gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v 394 (454)
|++||+++|+++|+|++.||++|+++|++|++|.+||+|+|....+.........+.+ +|++.|+||+...+|++
T Consensus 84 gl~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~ 158 (332)
T cd00825 84 GIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALS-----TPEKASRTFDAAADGFV 158 (332)
T ss_pred CCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhcccc-----CCCCCCCCCCCCCCCEE
Confidence 9999999999999999999999999999999999999999986555433222222233 37889999999999999
Q ss_pred eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 395 ~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
+|||++++||++.++|+++|+++|++|.|++..+|+.+...+.+.++.+.+++++++
T Consensus 159 ~gdGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al 215 (332)
T cd00825 159 FGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEAL 215 (332)
T ss_pred EEeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766656666667777777665
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-16 Score=153.77 Aligned_cols=148 Identities=32% Similarity=0.483 Sum_probs=123.8
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
.+.|+.+++.+||+++|++++ +..+|++|+..+++. .+..+.+|++.+
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~-------~i~~li~~~~~~~~~-------------------------~~~~a~~i~~~l 54 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKG-------PIVGVIVGTTGGSGE-------------------------FSGAAGQLAYHL 54 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-------CceEEEEEECCCCcc-------------------------ccHHHHHHHHHh
Confidence 567999999999999999864 233899998754321 234578999999
Q ss_pred cC-cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 315 GW-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 315 gl-~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
|+ ++|+++|+++|+|++.||++|.++|+.|++|.+||+|+|. +
T Consensus 55 g~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~------------------------------------~ 98 (254)
T cd00327 55 GISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------------F 98 (254)
T ss_pred CCCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce------------------------------------e
Confidence 99 8999999999999999999999999999999999999996 6
Q ss_pred eeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 394 v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
++|||++++||++.+++.+++++++++|.|+....++.+.. +.+..+.+.+++++++
T Consensus 99 ~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l 155 (254)
T cd00327 99 VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKAL 155 (254)
T ss_pred eecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHH
Confidence 79999999999999999999999999999999887775432 3344556666666655
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-14 Score=142.44 Aligned_cols=133 Identities=23% Similarity=0.311 Sum_probs=98.8
Q ss_pred HHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 234 p~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
....|+.+|+.+||+++|++++ +++ .|++++...++ .. ...+..++..
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~---~Id----~li~~~~~~~~--------------------~~-----p~~a~~v~~~ 141 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAE---DID----AVIVACSNMQR--------------------AY-----PAMAIEIQQA 141 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCCCC--------------------CC-----cHHHHHHHHh
Confidence 3457999999999999999986 333 57777652111 01 1135678999
Q ss_pred ccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 314 ~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
+|+++++++|+.+|+|++.||..|+++|++|.+|.+||+|+|.+. .. + -|+....++
T Consensus 142 Lgl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~------------~~~d~~~~~ 198 (372)
T PRK07515 142 LGIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICS-GH----------L------------NFRDRDSHF 198 (372)
T ss_pred cCCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeeccc-cc----------c------------cccCCCCCE
Confidence 999999999999999999999999999999999999999999721 00 0 022233689
Q ss_pred eeecCceeeehHHhHHHhhcc-ceeeeee
Q 012867 394 VMGEGAGVLLLEELEHAKKRG-AKIYAEF 421 (454)
Q Consensus 394 v~GEGaaalvLe~l~~A~~~G-~~i~a~I 421 (454)
++|||++++||++.+++..++ ..|++..
T Consensus 199 lfGDgAaA~vL~~~~~~~~~~~~~il~~~ 227 (372)
T PRK07515 199 IFGDVATAVIVERADTATSAGGFEILGTR 227 (372)
T ss_pred EecCccEEEEEeeccccccCCCceEEEEE
Confidence 999999999999876654333 2566544
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-13 Score=140.66 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=126.0
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ .|++|+..... ...+ .+..++..+|
T Consensus 27 ~~La~~A~~~AL~~agl~~~---dID----~vi~g~~~~~~------------------------~~~~-~a~~va~~lG 74 (393)
T PRK05656 27 VELGAAVIRRLLEQTGLDPA---QVD----EVILGQVLTAG------------------------AGQN-PARQAAIKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEecCCC------------------------CCCc-HHHHHHHHcC
Confidence 45889999999999999987 444 78888763110 0111 3566889999
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee-eec---------------c---------cchh-
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG---------------L---------GGFV- 367 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~---------------~---------~~f~- 367 (454)
+. -|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+.. |.. + ..+.
T Consensus 75 l~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05656 75 LPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFND 154 (393)
T ss_pred CCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccccC
Confidence 96 489999999999999999999999999999999999997543 110 0 0000
Q ss_pred -hhhh---------------------hhccc---CCCCCCCC----CccC------------------------------
Q 012867 368 -ACRA---------------------LSQRN---NDPTKASR----PWDI------------------------------ 388 (454)
Q Consensus 368 -~~~~---------------------Ls~~~---~~p~~~~r----pFd~------------------------------ 388 (454)
.++. .|+++ ..|.+..+ |+..
T Consensus 155 ~~~a~~a~~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 234 (393)
T PRK05656 155 YHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcCCC
Confidence 0000 01000 00122221 1110
Q ss_pred --CCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 389 --NRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 389 --~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
..+|.+ ++||++++||+++++|+++|.+++++|+|++... +.|++.+.+...+++++|+
T Consensus 235 ~~~~~g~lt~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~-----~~~~~~~~~~~~a~~~al~ 302 (393)
T PRK05656 235 AFKKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAG-----VDPAIMGIGPVSATRRCLD 302 (393)
T ss_pred CcCCCCCEEccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEec-----CCCcccchhHHHHHHHHHH
Confidence 024556 8999999999999999999999999999998764 4566677777788887774
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-12 Score=130.84 Aligned_cols=167 Identities=20% Similarity=0.307 Sum_probs=118.6
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhh-hhhhHHHHHHHHh
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTA 242 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a-~~mdp~~rl~l~a 242 (454)
..+.|+|+|...|.- .+.+++-+.+.--..+|..... |..+.. ..-.-..-|+.+|
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtG----------------------ir~R~~a~~~e~~s~la~~A 59 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTG----------------------IRERRIAADDETTSDLAVEA 59 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecC----------------------CceeeecCCCccHHHHHHHH
Confidence 357899999999998 4555554333332222222110 001111 1112345699999
Q ss_pred cchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCc
Q 012867 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (454)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~ 321 (454)
+++||++||++++ +++ -|++.+...+ ......|..|+..||+++ +.+
T Consensus 60 a~~AL~~Agi~~~---dID----lII~aT~tpd-------------------------~~~Ps~A~~vq~~LG~~~~~af 107 (323)
T COG0332 60 ARKALEDAGISPD---DID----LIIVATSTPD-------------------------HLFPSTACLVQARLGLGGAPAF 107 (323)
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEcCCcc-------------------------cCCChHHHHHHHHhCCCCccee
Confidence 9999999999987 333 4566665322 123445899999999988 999
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
.+..+||+.++||..|.++|++|.++.+||.|.|. +|+ .--|+++...+++|||||+
T Consensus 108 Dl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~---------------~S~--------~ld~~dR~t~vlFgDGAgA 164 (323)
T COG0332 108 DLQAACSGFLYALSVADGLIRSGGYKNVLVVGAET---------------LSR--------ILDWTDRDTCVLFGDGAGA 164 (323)
T ss_pred echhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhH---------------hhc--------cCCHhhccceEEEcCCceE
Confidence 99999999999999999999999999999999998 331 1224445688999999999
Q ss_pred eehHHhH
Q 012867 402 LLLEELE 408 (454)
Q Consensus 402 lvLe~l~ 408 (454)
+||++-+
T Consensus 165 vvl~~~~ 171 (323)
T COG0332 165 VVLEATE 171 (323)
T ss_pred EEEecCC
Confidence 9999865
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-13 Score=137.32 Aligned_cols=185 Identities=22% Similarity=0.274 Sum_probs=122.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+..++.... ....+..++..+|
T Consensus 23 ~eLa~~a~~~Al~dagl~~~---~Id----~vi~g~~~~~~~~~-----------------------~~~~a~~va~~lG 72 (389)
T PRK06064 23 RDLAVEAGLEALEDAGIDGK---DID----AMYVGNMSAGLFVS-----------------------QEHIAALIADYAG 72 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccccccc-----------------------cccHHHHHHHHcC
Confidence 46789999999999999886 344 68888754322100 0124677899999
Q ss_pred Cc-CCCcceeccccccceeeeccccceeccccceEeecCCCceee-ee----------------cccchh---hhhhhh-
Q 012867 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PI----------------GLGGFV---ACRALS- 373 (454)
Q Consensus 316 l~-Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~----------------~~~~f~---~~~~Ls- 373 (454)
++ +|.++|+++|+|++.||..|+++|++|++|++||+|+|.+.. +. ...++. ..++++
T Consensus 73 l~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (389)
T PRK06064 73 LAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIAR 152 (389)
T ss_pred CCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHHH
Confidence 98 699999999999999999999999999999999999986321 10 000110 011110
Q ss_pred --------------------ccc--CCCCCC----------------CCCccCCCCceeeecCceeeehHHhHHHhhccc
Q 012867 374 --------------------QRN--NDPTKA----------------SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGA 415 (454)
Q Consensus 374 --------------------~~~--~~p~~~----------------~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~ 415 (454)
+.+ ..|... +.|+. --|--.++||++++||++.+.|+++++
T Consensus 153 ~~~~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~~~ 231 (389)
T PRK06064 153 RYMHKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEYTD 231 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHhcC
Confidence 000 011110 01111 123336899999999999999999886
Q ss_pred eeeeeecCcceeccccccCCC-C-CCCcceecccccccc
Q 012867 416 KIYAEFRGGSFTSDAYHMTEP-H-PDGDIMLGGVQDYHC 452 (454)
Q Consensus 416 ~i~a~I~G~a~~~Dg~~~t~P-~-p~g~g~~~a~~~~~~ 452 (454)
++ .+|+|++..++..++..+ + +...+...+++++|+
T Consensus 232 ~~-v~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 269 (389)
T PRK06064 232 TP-VWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYK 269 (389)
T ss_pred CC-eEEEEEEEecCcccccccccccccHHHHHHHHHHHH
Confidence 54 589999999988766432 1 123444566666653
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-12 Score=133.57 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=104.1
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ .+++++..+++. .+ ..+..|...+
T Consensus 63 ~~~La~~A~~~aL~~agi~~~---dId----~li~~s~~~~~~--------------------~p-----~~a~~v~~~L 110 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSLG---DIE----LLACGTSQPDQL--------------------MP-----GHASMVHGEL 110 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEECCCCcC--------------------Ch-----HHHHHHHhhC
Confidence 467999999999999999886 333 477776532210 11 1245788888
Q ss_pred cCcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhh-hhhhhcccCCCCCCCCCccCCCCc
Q 012867 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA-CRALSQRNNDPTKASRPWDINRDG 392 (454)
Q Consensus 315 gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~-~~~Ls~~~~~p~~~~rpFd~~adG 392 (454)
|+++ |.+.|+.+|+|++.||+.|.++|+.|..+.+||+|+|.+........|.. .+.+.. .++..+++|+.+..|
T Consensus 111 gl~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 187 (378)
T PRK06816 111 GAPPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAE---LEENPEIAFEKDFLR 187 (378)
T ss_pred CCCCCceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhc---CcccCCCCCCCCCCC
Confidence 9875 88899999999999999999999999999999999998543332222221 233332 134567999999999
Q ss_pred eeeecCceeeehHHhH
Q 012867 393 FVMGEGAGVLLLEELE 408 (454)
Q Consensus 393 ~v~GEGaaalvLe~l~ 408 (454)
|++|||++++||++.+
T Consensus 188 ~~fGDGA~A~vl~~~~ 203 (378)
T PRK06816 188 WMLSDGAGAVLLENKP 203 (378)
T ss_pred EeeecccEEEEEEecC
Confidence 9999999999998643
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-12 Score=134.33 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=125.1
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+++++||+++|++++ +++ .||+|+...+.. ....++..++..+
T Consensus 27 ~~dL~~~A~~~aL~~agi~~~---~ID----~vi~G~~~~~~~------------------------~~~~~a~~i~~~l 75 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDPA---EVE----DVIMGCANPEGA------------------------TGANIARQIALRA 75 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----cEEEEEeecccc------------------------cccHHHHHHHHHc
Confidence 356889999999999999987 344 589987643221 0112577888888
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecc-------c---------chhhhhh-----
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL-------G---------GFVACRA----- 371 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~-------~---------~f~~~~~----- 371 (454)
|+. .|+++|+++|+||+.||+.|+++|++|++|++||||+|.+...... . .|..++.
T Consensus 76 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~ 155 (392)
T PRK07108 76 GLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLVEHKPEIYWSMLQTAENV 155 (392)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCCCcCCCcCccchhhhccCCccccCHHHHHHHH
Confidence 985 7999999999999999999999999999999999999987531100 0 0101010
Q ss_pred ----------------hhc-------c--------------c--CCCCCC--C---CCccCC------------------
Q 012867 372 ----------------LSQ-------R--------------N--NDPTKA--S---RPWDIN------------------ 389 (454)
Q Consensus 372 ----------------Ls~-------~--------------~--~~p~~~--~---rpFd~~------------------ 389 (454)
.|+ . | ..|... . ..++++
T Consensus 156 a~~~~i~r~~~d~~a~~s~~~A~~A~k~g~~~~ei~pv~~~~~~~n~~a~~~~~~~~~~~~de~~r~~~t~e~l~~l~~~ 235 (392)
T PRK07108 156 AKRYGISKERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSA 235 (392)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCceeeEEecccccccccCcccccceeEccCCCCCCCCCHHHHhcCCCC
Confidence 010 0 0 001000 0 001111
Q ss_pred -CCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 390 -RDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 390 -adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
-.|.+ ++||++++||++++.|++.|.+++++|+|++...+ .|++.+.+...+++++|+
T Consensus 236 ~~~g~lt~~n~~~~~DGAaa~vl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~ 301 (392)
T PRK07108 236 LPGGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGC-----EPDEMGIGPVFAVPKLLK 301 (392)
T ss_pred CCCCCCcCCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCcccchhHHHHHHHHHH
Confidence 02322 69999999999999999999999999999998754 355556666777777764
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-12 Score=133.09 Aligned_cols=90 Identities=20% Similarity=0.345 Sum_probs=72.9
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
.|+.++.+++|+|+|++++ .++ .||+|...+... ....+..++...|+
T Consensus 29 ~L~~~a~~~al~~agi~~~---~Id----~vv~G~~~~~~~-------------------------g~~~~r~~~~~~Gl 76 (392)
T PRK06633 29 MLAAHLIKDILQNSKIDPA---LVN----EVILGQVITGGS-------------------------GQNPARQTLIHAGI 76 (392)
T ss_pred HHHHHHHHHHHHHcCCCHH---HcC----EEEEEecCcccc-------------------------ccHHHHHHHHHCCC
Confidence 4778899999999999987 344 689997642210 11234556788899
Q ss_pred c--CCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 317 M--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 317 ~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
. =|.++|+++|+||+.|++.|++.|++|++|++||||+|.+.
T Consensus 77 ~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms 120 (392)
T PRK06633 77 PKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMS 120 (392)
T ss_pred CCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 6 39999999999999999999999999999999999999865
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-12 Score=131.83 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=73.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+..+++. ....+..++..+|
T Consensus 23 ~~La~~A~~~AL~dAgl~~~---dID----~vi~~~~~~~~~-------------------------~~~~a~~v~~~lG 70 (386)
T cd00751 23 DDLGAAVIKALLERAGLDPE---EVD----DVIMGNVLQAGE-------------------------GQNPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHHHHhcCCCHH---HCC----EEEEEeccCCCC-------------------------CChHHHHHHHHcC
Confidence 56889999999999999986 344 678876532211 1123556888999
Q ss_pred CcC--CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+.. |.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+
T Consensus 71 l~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~ 114 (386)
T cd00751 71 LPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESM 114 (386)
T ss_pred CCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeecc
Confidence 975 899999999999999999999999999999999999875
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-12 Score=128.41 Aligned_cols=169 Identities=20% Similarity=0.282 Sum_probs=116.0
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
|.+|.|+++|...|.- ...+++++.+......+. .+ .++ ....+..+. .....|+.++
T Consensus 1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~--~~---~gi-----------~~r~~~~~~-----~~~~~la~~A 59 (319)
T PRK09352 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIV--TR---TGI-----------KERRIAAPD-----ETTSDLATEA 59 (319)
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhh--hh---cCe-----------EEEEeCCCC-----CCHHHHHHHH
Confidence 4578999999999998 677777776432111110 00 000 000000011 2356799999
Q ss_pred cchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCc
Q 012867 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (454)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~ 321 (454)
+.+||+++|++++ +++ .|++|+...+. .....+.+|+..+|+.+ |.+
T Consensus 60 ~~~al~~agl~~~---~id----~vi~~~~~~~~-------------------------~~~~~~~~i~~~lG~~~~~~~ 107 (319)
T PRK09352 60 AKKALEAAGIDPE---DID----LIIVATTTPDY-------------------------AFPSTACLVQARLGAKNAAAF 107 (319)
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCchHHHHHHHHhCCCCCcEe
Confidence 9999999999876 333 57777653211 01123678999999988 889
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
+|.++|+|++.||..|+++|++|++|.+||+|+|.+. .. + . ++....++++|||+++
T Consensus 108 ~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~-----------~-~~~~~~~~~~gDGaaA 164 (319)
T PRK09352 108 DLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLS-RI----------V-----------D-WTDRSTCVLFGDGAGA 164 (319)
T ss_pred eccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhc-cc----------c-----------C-cccCCceEEEeccceE
Confidence 9999999999999999999999999999999999832 10 0 0 1122347899999999
Q ss_pred eehHHhH
Q 012867 402 LLLEELE 408 (454)
Q Consensus 402 lvLe~l~ 408 (454)
+||++..
T Consensus 165 ~ll~~~~ 171 (319)
T PRK09352 165 VVLGASE 171 (319)
T ss_pred EEEEEcC
Confidence 9999743
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-12 Score=130.10 Aligned_cols=181 Identities=24% Similarity=0.309 Sum_probs=122.4
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+++|++++ +++ .|++|+....+. .....+..++...|
T Consensus 28 ~eL~~~A~~~AL~~agi~~~---dID----~vi~g~~~~~~~------------------------~~~~~a~~~~~~~G 76 (394)
T PRK09051 28 TDLGATVVREALARAGVDPD---QVG----HVVFGHVIPTEP------------------------RDMYLSRVAAINAG 76 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEeeeccccC------------------------CCccHHHHHHHHcC
Confidence 45888999999999999987 333 688887642110 01112344556678
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeec----------------c----cchhh-----
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------------L----GGFVA----- 368 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~----------------~----~~f~~----- 368 (454)
+. -|.++|+++|+|++.|++.|+++|++|.+|.+||+|+|.+..... . ..+..
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T PRK09051 77 VPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTI 156 (394)
T ss_pred CCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 599999999999999999999999999999999999997643210 0 00000
Q ss_pred -hhhh---------------------hccc--C-------------------------CCCCCCC------------Ccc
Q 012867 369 -CRAL---------------------SQRN--N-------------------------DPTKASR------------PWD 387 (454)
Q Consensus 369 -~~~L---------------------s~~~--~-------------------------~p~~~~r------------pFd 387 (454)
++.. ++.+ . +|+...| |+.
T Consensus 157 ~~~~~a~~~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~v~ 236 (394)
T PRK09051 157 HMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKPVF 236 (394)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCCcc
Confidence 0100 0000 0 2333333 222
Q ss_pred CCCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 388 INRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 388 ~~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
...+|.+ ++||++++||++.+.|++.|.+++++|+|++...+ .|+..+.+...+++++|+
T Consensus 237 ~~~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~ 303 (394)
T PRK09051 237 KKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGV-----DPEYMGIGPVPATQKALE 303 (394)
T ss_pred cCCCccEeCCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecc-----CCCcccccHHHHHHHHHH
Confidence 2112444 47999999999999999999999999999988753 444555666777777764
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-12 Score=131.61 Aligned_cols=178 Identities=22% Similarity=0.230 Sum_probs=123.9
Q ss_pred HHHHHhcchhhh-cCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 237 LYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 237 rl~l~aa~eALe-dAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
.|+.++.+++|+ ++|++++ .++ .||+|+..... .....++..++...|
T Consensus 28 ~L~~~a~~~al~r~a~i~~~---~Id----~vi~G~~~~~~------------------------~~g~~~ar~~~l~~G 76 (400)
T PRK13359 28 DLGAVPLKALVERNPDVDWA---AID----DVIYGCANQAG------------------------EDNRNVARMSLLLAG 76 (400)
T ss_pred HHHHHHHHHHHHhccCCCHH---HCC----EEEEEeccccc------------------------cccccHHHHHHHHcC
Confidence 466778999999 5799987 344 78999763110 001235677888889
Q ss_pred CcC--CCcceeccccccceeeeccccceeccccceEeecCCCceee-eeccc----c-----------------------
Q 012867 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGLG----G----------------------- 365 (454)
Q Consensus 316 l~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~~~----~----------------------- 365 (454)
|.. |.++|+.+|+||+.||+.|++.|++|++|++||||+|.+.. |..+. .
T Consensus 77 l~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (400)
T PRK13359 77 LPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWRFVNPLMKQ 156 (400)
T ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCccccccccccccCCcccccccccccccCCcccc
Confidence 964 99999999999999999999999999999999999998754 31000 0
Q ss_pred -hhh--hhh---------------------hhccc---CCCCCCC-------------------------C---------
Q 012867 366 -FVA--CRA---------------------LSQRN---NDPTKAS-------------------------R--------- 384 (454)
Q Consensus 366 -f~~--~~~---------------------Ls~~~---~~p~~~~-------------------------r--------- 384 (454)
|.. ++. -|+.+ ..+.+.. |
T Consensus 157 ~~~~~~mg~~ae~~a~~~gisre~~d~~a~~Sh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~De~~r~~t~e~l~~ 236 (400)
T PRK13359 157 LYGVDSMPETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDPLVVSRDEHPRETTLEALAK 236 (400)
T ss_pred ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCccceeeeeeccCCCCceeecCCCCCCCCCHHHHhc
Confidence 000 000 01000 0011111 1
Q ss_pred ---CccCCCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 385 ---PWDINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 385 ---pFd~~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
.|+ .+|.+ ++||++++||++++.|+++|.+++++|+|++... +.|++.+.+...+++++|+
T Consensus 237 l~p~f~--~~g~lT~~n~~~~~DGAaa~vL~s~e~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~A~~~al~ 307 (400)
T PRK13359 237 LKGVVR--PDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAG-----VEPRVMGIGPAPATQKLLA 307 (400)
T ss_pred CCCccC--CCCceecccccCccCceEEEEEecHHHHHHCCCCccEEEEEEEEec-----CCCCccchhHHHHHHHHHH
Confidence 123 23433 6999999999999999999999999999998863 3566777777888888774
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-12 Score=129.19 Aligned_cols=178 Identities=22% Similarity=0.221 Sum_probs=123.0
Q ss_pred HHHHHHhcchhhh-cCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALe-dAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|+.++.+++|+ |+|++++ .++ .||+|+.... +.....++..++...
T Consensus 26 ~~L~~~a~~~al~~~a~i~~~---~Id----~v~~G~~~~~------------------------~~~~~~~ar~~~~~~ 74 (400)
T TIGR02430 26 DDLAAVPIKALLARNPQLDWA---AID----DVIYGCANQA------------------------GEDNRNVARMAALLA 74 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HCC----EEEEEecccc------------------------ccccccHHHHHHHHc
Confidence 3577889999999 7899886 333 6899975311 011123455688899
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeec--------c---------------------
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------L--------------------- 363 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~--------~--------------------- 363 (454)
|+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+..... +
T Consensus 75 Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (400)
T TIGR02430 75 GLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWRFINPLMK 154 (400)
T ss_pred CCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCcccccccccccccccccccccccccccCcccc
Confidence 996 499999999999999999999999999999999999998753210 0
Q ss_pred cchh-------------hhhhhhc-----------------------------------cc----CCCCCCCCC------
Q 012867 364 GGFV-------------ACRALSQ-----------------------------------RN----NDPTKASRP------ 385 (454)
Q Consensus 364 ~~f~-------------~~~~Ls~-----------------------------------~~----~~p~~~~rp------ 385 (454)
..|. +.| +++ .| .+|+...|+
T Consensus 155 ~~~~~~~M~~~ae~~a~~yg-isre~~d~~A~~Sh~~a~~a~~~g~~~~ei~pv~vk~~~~~~~~~n~da~~r~~~t~e~ 233 (400)
T TIGR02430 155 ALYGVDSMPETAENVAEEFG-ISREDQDAFALRSQQRTAAAQASGFFAEEIVPVVIPQKKGEPTVVDQDEHPRPETTLEG 233 (400)
T ss_pred cccccCcHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeccCCCCceeeCCCCccCCCCCHHH
Confidence 0011 000 010 01 123333331
Q ss_pred -------ccCCCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 386 -------WDINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 386 -------Fd~~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
|+. +|.+ ++||++++||+++++|+++|.+++++|+|++...+ .|.+.+.+...+++++|
T Consensus 234 l~~~~~v~~p--~g~lt~~~~s~~~DGAaa~vl~s~e~A~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al 306 (400)
T TIGR02430 234 LAKLKPVVRP--DGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGV-----EPRIMGIGPVPATQKLL 306 (400)
T ss_pred HhcCCCcccC--CCCEeccccCCcCCceEEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccchHHHHHHHHH
Confidence 221 2322 69999999999999999999999999999987653 34445556667777776
Q ss_pred c
Q 012867 452 C 452 (454)
Q Consensus 452 ~ 452 (454)
+
T Consensus 307 ~ 307 (400)
T TIGR02430 307 A 307 (400)
T ss_pred H
Confidence 4
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-12 Score=131.41 Aligned_cols=184 Identities=23% Similarity=0.286 Sum_probs=127.6
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+++++||+|+|++++ +++ +|++|+...... ....+..++..+
T Consensus 16 ~~eL~~~A~~~Al~dagl~~~---~Id----~vi~g~~~~~~~-------------------------~~~~a~~va~~l 63 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPA---DID----AVVVGNAAGGRF-------------------------QSFPGALIAEYL 63 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccccccc-------------------------ccchHHHHHHHc
Confidence 356889999999999999876 333 678877532110 123467899999
Q ss_pred cCc-CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeec------------------ccchh---hhhhh
Q 012867 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG------------------LGGFV---ACRAL 372 (454)
Q Consensus 315 gl~-Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~------------------~~~f~---~~~~L 372 (454)
|+. .|.++|+.+|+|++.+|+.|+++|++|++|++||+|+|.+..... +..+. .++++
T Consensus 64 Gl~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 143 (375)
T cd00829 64 GLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALA 143 (375)
T ss_pred CCCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHH
Confidence 994 589999999999999999999999999999999999997543210 00000 00000
Q ss_pred hc---------------------cc--CCCCC----------------CCCCccCCCCceeeecCceeeehHHhHHHhhc
Q 012867 373 SQ---------------------RN--NDPTK----------------ASRPWDINRDGFVMGEGAGVLLLEELEHAKKR 413 (454)
Q Consensus 373 s~---------------------~~--~~p~~----------------~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~ 413 (454)
.+ .+ ..|.. .+.|+.. .|-..++||++++||++.+.|++.
T Consensus 144 a~~~~~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~~-~~~~~~~DGaaa~vl~s~~~a~~~ 222 (375)
T cd00829 144 ARRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLRL-LDCCPVSDGAAAVVLASEERAREL 222 (375)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCch-hhcCCCCCceeEEEEecHHHHhhc
Confidence 00 00 00111 0112221 234468999999999999999887
Q ss_pred cceeeeeecCcceeccccccCCCCC--CCcceecccccccc
Q 012867 414 GAKIYAEFRGGSFTSDAYHMTEPHP--DGDIMLGGVQDYHC 452 (454)
Q Consensus 414 G~~i~a~I~G~a~~~Dg~~~t~P~p--~g~g~~~a~~~~~~ 452 (454)
.++++.|+|++..++..+++.+.. .+.+...+++++|+
T Consensus 223 -~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 262 (375)
T cd00829 223 -TDRPVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYK 262 (375)
T ss_pred -CCCCeEEEEEEEecCCccccccccccccHHHHHHHHHHHH
Confidence 677899999999999887765543 56666677777764
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-11 Score=127.61 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=72.0
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+...+.. . ...+..++..+|
T Consensus 22 ~~La~~A~~~Al~dAgl~~~---dID----~vv~g~~~~~~~--------------------~-----~~~a~~va~~lG 69 (386)
T TIGR01930 22 EDLGAAVIKELLERNPLDPE---LID----DVIFGNVLQAGE--------------------Q-----QNIARQAALLAG 69 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCCC--------------------C-----ChHHHHHHHHcC
Confidence 56889999999999999987 344 677776532110 0 113456888889
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+. .|.+.|+++|+|++.||+.|+++|++|.+|.+||+|+|.+
T Consensus 70 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~ 113 (386)
T TIGR01930 70 LPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESM 113 (386)
T ss_pred CCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhh
Confidence 86 4899999999999999999999999999999999998864
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-11 Score=122.79 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=91.3
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ .|++++..+++ .....+.+|+..+
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~---dId----~li~~~~~~~~-------------------------~~p~~a~~v~~~l 99 (329)
T PRK07204 52 SSYMGAEAAKKAVEDAKLTLD---DID----CIICASGTIQQ-------------------------AIPCTASLIQEQL 99 (329)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCCCC-------------------------CCccHHHHHHHHh
Confidence 456999999999999999986 333 46666543211 1123477899999
Q ss_pred cCcC---CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC
Q 012867 315 GWMG---PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (454)
Q Consensus 315 gl~G---ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad 391 (454)
|+++ |++.|+.+|+|++.||+.|.++|+.|.++.+||+++|... .. ..|+...+
T Consensus 100 gl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s-~~----------------------~~~~~~~~ 156 (329)
T PRK07204 100 GLQHSGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISS-VG----------------------LNWGQNES 156 (329)
T ss_pred CCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEecccc-CC----------------------CCcccCcc
Confidence 9975 8899999999999999999999999999999999999721 10 01233446
Q ss_pred ceeeecCceeeehHHhH
Q 012867 392 GFVMGEGAGVLLLEELE 408 (454)
Q Consensus 392 G~v~GEGaaalvLe~l~ 408 (454)
++++|||++++||++.+
T Consensus 157 ~~lfGDGAaA~ll~~~~ 173 (329)
T PRK07204 157 CILFGDGAAAVVITKGD 173 (329)
T ss_pred eEEEecccEEEEEEEcC
Confidence 89999999999999743
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-11 Score=126.87 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=120.1
Q ss_pred HHHHHHhcchhhhcC-CccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALedA-G~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|+.+++++||+++ |++++ +++ .||+|+...+.. .....+..+....
T Consensus 32 ~eLa~~A~~~AL~~a~gl~~~---dID----~vi~g~~~~~~~------------------------~~~~~ar~~~~~~ 80 (399)
T PRK09052 32 DDLLAHVLRSAVAQVPGLDPK---LIE----DAIVGCAMPEAE------------------------QGLNVARIGALLA 80 (399)
T ss_pred HHHHHHHHHHHHHhccCcCHH---HCC----EEEEEecCCCCC------------------------CCchHHHHHHHHc
Confidence 458889999999997 99987 344 789997642210 0111222345566
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecc------c--chh---------hhhhh---
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL------G--GFV---------ACRAL--- 372 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~------~--~f~---------~~~~L--- 372 (454)
|+. -|.++|+++|+|++.||+.|+++|++|++|++||+|+|.+.....+ . .+. .++..
T Consensus 81 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 160 (399)
T PRK09052 81 GLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAIFARDENVGIAYGMGLTAEK 160 (399)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCcccCcccccCcchhccCCcccccchHHHHHHH
Confidence 885 3799999999999999999999999999999999999976432100 0 000 01100
Q ss_pred ------------------hccc--CCCC-CCCC----CccC---------------------------------------
Q 012867 373 ------------------SQRN--NDPT-KASR----PWDI--------------------------------------- 388 (454)
Q Consensus 373 ------------------s~~~--~~p~-~~~r----pFd~--------------------------------------- 388 (454)
++.+ ..|. +..+ |.+.
T Consensus 161 ~~~~ygitre~~d~~a~~sh~~a~~n~~ag~~~~ei~~~~v~~~~~~~~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 240 (399)
T PRK09052 161 VAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKP 240 (399)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEeccccccccccCcccccceEeccCCCCCCCCCHHHHhcCCC
Confidence 0000 0011 1111 1110
Q ss_pred --CCCc-------eeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 389 --NRDG-------FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 389 --~adG-------~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
..+| --++||++++||++++.|+++|.+++++|+|++...+ .|++.+.+...+++++|+
T Consensus 241 ~f~~~g~lt~~n~s~~~DGAaa~vl~se~~a~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~A~~~al~ 308 (399)
T PRK09052 241 VFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGV-----PPEIMGIGPIEAIPAALK 308 (399)
T ss_pred ccCCCCcEECCccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecc-----CCCccchhHHHHHHHHHH
Confidence 0113 3479999999999999999999999999999998753 455556666778877774
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-11 Score=124.24 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=73.4
Q ss_pred HHHHHHhcchhhh-cCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALe-dAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|+.++.+++|+ |+|++++ .++ .|++|+.... +.....++..++...
T Consensus 27 ~~L~~~a~~~al~~~agi~~~---~Id----~v~~G~~~~~------------------------~~~~~~~ar~~~~~~ 75 (401)
T PRK09050 27 DDLGAVPLKALMARNPGVDWE---AVD----DVIYGCANQA------------------------GEDNRNVARMSALLA 75 (401)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HCC----EEEEEecccc------------------------ccccchHHHHHHHHc
Confidence 3577889999999 7899986 343 5899875311 011122455688899
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
|+. -|.++|+++|+||+.||+.|+++|++|++|++||||+|.+..
T Consensus 76 Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~ 122 (401)
T PRK09050 76 GLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSR 122 (401)
T ss_pred CCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEeccccccc
Confidence 993 499999999999999999999999999999999999998753
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-11 Score=124.91 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=72.3
Q ss_pred HHHHHHhcchhhhcC-CccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALedA-G~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|+.+++++||+|+ |++++ +++ +|++|...... .. ....+..++..+
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~---dID----~vv~g~~~~~~---------------------~~---g~~~~~~~a~~l 76 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPT---DID----DLMLGCGLPGG---------------------EQ---GFNMARVVAVLL 76 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HCC----EEEEEcccccc---------------------cc---cCCHHHHHHHHc
Confidence 458899999999997 99987 344 78887542100 00 012346788999
Q ss_pred cCcC-CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 315 gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
|+.+ |.++|+++|+|++.||+.|+++|++|++|++||+|+|.+
T Consensus 77 Gl~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~ 120 (406)
T PRK07851 77 GYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETV 120 (406)
T ss_pred CCCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEec
Confidence 9976 889999999999999999999999999999999998863
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-11 Score=124.63 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=121.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+..... .....+..++..+|
T Consensus 22 ~eLa~~A~~~AL~dAgi~~~---dID----~vi~g~~~~~~-------------------------~~~~~a~~v~~~lG 69 (385)
T PRK12578 22 QELAWESIKEALNDAGVSQT---DIE----LVVVGSTAYRG-------------------------IELYPAPIVAEYSG 69 (385)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccc-------------------------ccCChHHHHHHHhC
Confidence 46889999999999999987 344 78888653110 00113567888999
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecc------------------cch--hhh-hhhh
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL------------------GGF--VAC-RALS 373 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~------------------~~f--~~~-~~Ls 373 (454)
+.+ |.++|+++|+|++.||+.|++.|++|++|.+||+|+|.+...... .++ ... .++.
T Consensus 70 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a 149 (385)
T PRK12578 70 LTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYA 149 (385)
T ss_pred CCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHH
Confidence 976 678999999999999999999999999999999999975321100 000 000 0000
Q ss_pred ---------------------ccc--CCCCCCCC-Ccc--------------CCCCceeeecCceeeehHHhHHHhhccc
Q 012867 374 ---------------------QRN--NDPTKASR-PWD--------------INRDGFVMGEGAGVLLLEELEHAKKRGA 415 (454)
Q Consensus 374 ---------------------~~~--~~p~~~~r-pFd--------------~~adG~v~GEGaaalvLe~l~~A~~~G~ 415 (454)
+.+ ..|....+ +.+ .--|-..++||++++||.+.+.|++.|.
T Consensus 150 ~~~m~~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~A~~l~~ 229 (385)
T PRK12578 150 TRHMAVYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPIKLLDSCPISDGSATAIFASEEKVKELKI 229 (385)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCccHhhcCCcCCCeEEEEEecHHHHHhcCC
Confidence 000 11221111 111 0123334689999999999999998886
Q ss_pred eeeeeecCcceeccccccCC-CCCCCc-ceecccccccc
Q 012867 416 KIYAEFRGGSFTSDAYHMTE-PHPDGD-IMLGGVQDYHC 452 (454)
Q Consensus 416 ~i~a~I~G~a~~~Dg~~~t~-P~p~g~-g~~~a~~~~~~ 452 (454)
+.+++|+|++..+|..+++. |+..+. +...+++++|+
T Consensus 230 ~~~~~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 268 (385)
T PRK12578 230 DSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYN 268 (385)
T ss_pred CCCeEEEEEEEecCcccccccccccccHHHHHHHHHHHH
Confidence 66789999999988776543 333232 33456666553
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-11 Score=125.05 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=72.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+++|+.++ .++ .|++|+...+.. ....++..++..+|
T Consensus 28 ~eLa~~A~~~AL~~ag~~~~---dID----~vi~g~~~~~~~------------------------~g~~~a~~~~~~lG 76 (391)
T PRK07661 28 DDLGALVVKETLKRAGNYEG---PID----DLIIGCAMPEAE------------------------QGLNMARNIGALAG 76 (391)
T ss_pred HHHHHHHHHHHHHhcCCChh---HCC----EEEEEecccccc------------------------ccchHHHHHHHHcC
Confidence 45888999999999987654 333 688886532100 00123456888899
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+. -|.++|+++|+||+.|++.|++.|++|++|++||+|+|.+.
T Consensus 77 l~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms 121 (391)
T PRK07661 77 LPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMS 121 (391)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecc
Confidence 97 39999999999999999999999999999999999999764
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-11 Score=123.57 Aligned_cols=91 Identities=21% Similarity=0.358 Sum_probs=73.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ .|++|+..+.+. ...++..++..+|
T Consensus 27 ~eLa~~A~~~AL~~agl~~~---dID----~vv~g~~~~~~~-------------------------~~~~a~~va~~~G 74 (404)
T PRK06205 27 EELAATVIRALVERTGIDPA---RID----DVIFGQGYPNGE-------------------------APAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCCC-------------------------CChHHHHHHHHcC
Confidence 35788999999999999987 344 788887642211 1123456788889
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+. -|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+.
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms 119 (404)
T PRK06205 75 LPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMS 119 (404)
T ss_pred CCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhc
Confidence 86 38999999999999999999999999999999999999754
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-10 Score=117.94 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=120.8
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccc--cCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHH
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGV--SGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~--s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l 240 (454)
.+.|.|+|+|...|.- .+.+++.+.+.+.- ..+.+ ..+ . +..| |. ...+..+. .....|+.
T Consensus 3 ~~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~-~~i-----~-~~~G-i~---~R~~~~~~-----~~~~~la~ 66 (338)
T PRK09258 3 YSNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPP-GQL-----E-ALTG-IR---ERRWWPEG-----TQLSDGAI 66 (338)
T ss_pred ccceEEEEEEecCCCccCcHHHHHHHhhhcccccCCCh-hHh-----h-hhcC-ce---eEecCCCC-----CCHHHHHH
Confidence 3568999999999998 56666666543211 11110 000 0 0000 00 00000111 11356999
Q ss_pred HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC--
Q 012867 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-- 318 (454)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-- 318 (454)
+|+++||+++|+.++ +++ .|++++...++ .....+..++..+|+..
T Consensus 67 ~Aa~~aL~~ag~~~~---~Id----~li~~s~~~~~-------------------------~~p~~a~~v~~~lgl~~~~ 114 (338)
T PRK09258 67 AAGRKALAEAGIDPS---DIG----LLINTSVCRDY-------------------------LEPATACRVHHNLGLPKSC 114 (338)
T ss_pred HHHHHHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCChHHHHHHHHcCCCCCC
Confidence 999999999999876 333 46666642111 11234678999999963
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecC
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEG 398 (454)
+.+.|.++|+|++.||+.|.++|++|.++.+||+++|.. +...-..+. .+.. ++..+.+|+..-.++.+|||
T Consensus 115 ~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~-s~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~GDG 186 (338)
T PRK09258 115 ANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESA-REIVEATID--RLLA-----PETTREDFAQSFATLTLGSG 186 (338)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEeccc-chhccchhh--hhcc-----CccchhhhhhccceEEeccc
Confidence 789999999999999999999999999999999999973 222111111 1111 22223578877788999999
Q ss_pred ceeeehHHh
Q 012867 399 AGVLLLEEL 407 (454)
Q Consensus 399 aaalvLe~l 407 (454)
|+++||++.
T Consensus 187 A~A~ll~~~ 195 (338)
T PRK09258 187 AAAAVLTRG 195 (338)
T ss_pred ceEEEEecC
Confidence 999999964
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-11 Score=122.74 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=72.8
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.++.++||+|+|++++ .++ .||+|+...+.. ...+ ++..++...|
T Consensus 27 ~eL~~~a~~~al~~agi~~~---~Id----~v~~G~~~~~~~-----------------------~~~~-~ar~~~~~~G 75 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGD---DIE----DVILGCTNQAGE-----------------------DSRN-VARNALLLAG 75 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccccc-----------------------cccc-HHHHHHHhcC
Confidence 45788999999999999987 344 689997632110 0011 2345777788
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+.
T Consensus 76 lp~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms 120 (401)
T PRK08131 76 LPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMS 120 (401)
T ss_pred CCCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCC
Confidence 85 58999999999999999999999999999999999999764
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-11 Score=121.28 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=69.7
Q ss_pred HHHHHHhcchhhh-cCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALe-dAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|+.++.++||+ ++|++++ .++ .||+|+...... . ...++..+....
T Consensus 26 ~~L~~~a~~~al~~~agl~~~---~Id----~v~~G~~~~~~~-----------------------~-g~~~ar~~~~~~ 74 (385)
T TIGR02445 26 EDLSAHLMSKLLARNPKVDPA---EVE----DIYWGCVQQTLE-----------------------Q-GFNIARNAALLA 74 (385)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HcC----EEEEeccccccc-----------------------c-cchHHHHHHHHC
Confidence 4588899999999 5799987 344 799997521000 0 011344455556
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
|+. -|.++|+++|+||+.||+.|+++|+.|++|++||||+|.+.
T Consensus 75 g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms 120 (385)
T TIGR02445 75 QIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMG 120 (385)
T ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcc
Confidence 664 37799999999999999999999999999999999999864
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-11 Score=117.43 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=112.1
Q ss_pred EEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcch
Q 012867 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (454)
Q Consensus 167 IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~e 245 (454)
+.|.++|..+|.- .+.+++.+.+......+.+ + .++.. ..+..+. .....|+.+++++
T Consensus 3 ~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~--~---~gi~~-----------r~~~~~~-----~~~~~la~~A~~~ 61 (318)
T TIGR00747 3 AGILGTGSYLPEKVLTNADLEKMVDTSDEWIVT--R---TGIKE-----------RRIAADD-----ETSSTMGFEAAKR 61 (318)
T ss_pred CEEEEEEEECCCceecHHHHHHhcCCchHHeec--c---cCceE-----------EEECCCC-----CCHHHHHHHHHHH
Confidence 6799999999998 6777777655321110100 0 00000 0010011 1235689999999
Q ss_pred hhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCccee
Q 012867 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSIS 324 (454)
Q Consensus 246 ALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~tv~ 324 (454)
||+++|++++ +++ .|++++...++ .....+.+++..+|+++ |.+.|.
T Consensus 62 al~~agl~~~---~Id----~~i~~~~~~~~-------------------------~~~~~a~~l~~~lGl~~~~~~~v~ 109 (318)
T TIGR00747 62 AIENAGISKD---DID----LIIVATTTPDH-------------------------AFPSAACMVQAYLGIKGIPAFDLS 109 (318)
T ss_pred HHHHcCCCHH---HCC----EEEEECCCCCC-------------------------CCChHHHHHHHHhCCCCCcEeehh
Confidence 9999999876 333 56666653211 11123678999999998 889999
Q ss_pred ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeeeh
Q 012867 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (454)
Q Consensus 325 tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalvL 404 (454)
.+|+|++.||+.|+++|++|.++.+||+|+|.+... + ++.+ ....+++|||++++||
T Consensus 110 ~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~-----------~-----------~~~~-~~~~~~~GDGAaA~lL 166 (318)
T TIGR00747 110 AACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSST-----------L-----------DWTD-RGTCVLFGDGAGAVVL 166 (318)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCc-----------C-----------CcCC-CCeEEEEecceeEEEE
Confidence 999999999999999999999999999999973211 0 1111 2245789999999999
Q ss_pred HHhH
Q 012867 405 EELE 408 (454)
Q Consensus 405 e~l~ 408 (454)
++.+
T Consensus 167 ~~~~ 170 (318)
T TIGR00747 167 GESE 170 (318)
T ss_pred eecC
Confidence 8743
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-10 Score=120.71 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=70.7
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ .++ +|++|+..... . ....+..++..+|
T Consensus 26 ~~L~~~a~~~al~dAgl~~~---~ID----~vv~g~~~~~~----------------------~---~~~~~~~~~~~~G 73 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPA---LVQ----EVFFGNVLSAN----------------------L---GQAPARQAALGAG 73 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCcCC----------------------c---CCcHHHHHHHhcC
Confidence 45889999999999999987 344 78888642110 0 0012345778888
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+. =|.++|+++|+|++.||++|+++|++|++|++||+|+|.+
T Consensus 74 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~ 117 (394)
T PLN02644 74 LPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESM 117 (394)
T ss_pred CCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEec
Confidence 85 3788999999999999999999999999999999998875
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-11 Score=122.18 Aligned_cols=90 Identities=22% Similarity=0.341 Sum_probs=69.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+...... ....+..+....|
T Consensus 27 ~~La~~A~~~AL~dAgl~~~---dID----~vi~g~~~~~~~-------------------------~~~~~~~~~~~~g 74 (393)
T PRK05790 27 VELGAIVIKAALERAGVPPE---QVD----EVIMGQVLQAGA-------------------------GQNPARQAALKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----eEEEEEecCCCC-------------------------CCcHHHHHHHHcC
Confidence 46889999999999999987 444 788887532100 0112233555667
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+. -|.++|+++|+|++.||..|+++|++|.+|.+||+|+|.+
T Consensus 75 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~ 118 (393)
T PRK05790 75 LPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESM 118 (393)
T ss_pred CCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeecc
Confidence 75 4899999999999999999999999999999999999975
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-11 Score=123.43 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=72.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+....+. .....+..++..+|
T Consensus 72 ~eLa~eA~~~AL~dAgl~~~---dID----~vv~G~~~~~~~------------------------~~~~~~r~~a~~~G 120 (452)
T PLN02287 72 DDLLAPVLKAVVEKTGLNPS---EVG----DIVVGTVLAPGS------------------------QRANECRMAAFYAG 120 (452)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeecCccc------------------------ccchHHHHHHHHCC
Confidence 45888999999999999987 444 688887632211 00112234667779
Q ss_pred CcC--CCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+.+ |.++|+++|+|++.||+.|+++|++|++|++||||+|.+.
T Consensus 121 l~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS 165 (452)
T PLN02287 121 FPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMT 165 (452)
T ss_pred CCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecC
Confidence 864 8899999999999999999999999999999999999764
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.4e-11 Score=121.32 Aligned_cols=180 Identities=21% Similarity=0.270 Sum_probs=116.1
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchh-hHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV-FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|+.+++++||+|+|++++ +++ .|++|+...+... ... . ....+...+
T Consensus 33 ~~L~~~a~~~AL~~agl~~~---dID----~vi~g~~~~~~~~~~~~----------------------~-~~~~l~a~~ 82 (394)
T PRK06445 33 EELAAMLINRLIEKTGIKPE---EID----DIITGCALQVGENWLYG----------------------G-RHPIFLARL 82 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----eeEEEeecCCCcccccH----------------------H-HHHHHHcCC
Confidence 45888999999999999987 444 7888876432210 000 0 001122223
Q ss_pred cCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeee-----------ccc---c---hh-----hhhhh
Q 012867 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-----------GLG---G---FV-----ACRAL 372 (454)
Q Consensus 315 gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~-----------~~~---~---f~-----~~~~L 372 (454)
+..-|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+.... .+. . +. .+++.
T Consensus 83 ~~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 162 (394)
T PRK06445 83 PYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLT 162 (394)
T ss_pred CCCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccccCccccCccccCChhhccccccCcccccCCCCHHHH
Confidence 34568999999999999999999999999999999999999653110 000 0 00 01110
Q ss_pred hcc---------------------c--C-------------------------CCCCCCCC-------------ccCCCC
Q 012867 373 SQR---------------------N--N-------------------------DPTKASRP-------------WDINRD 391 (454)
Q Consensus 373 s~~---------------------~--~-------------------------~p~~~~rp-------------Fd~~ad 391 (454)
+++ | . +|+...|+ |+ .+
T Consensus 163 a~~~~~~ygitre~~a~va~~sh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~npda~~r~~~t~e~~~~~~~v~~--~~ 240 (394)
T PRK06445 163 AEKLAEEAGIKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEVEGKKKVVDVDQSVRPDTSLEKLAKLPPAFK--PD 240 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeEEEecCCCCceeeCCCCCCCCCCCHHHHhcCCCccC--CC
Confidence 000 0 0 22222221 11 11
Q ss_pred c-------eeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 392 G-------FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 392 G-------~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
| -.++||++++||++.+.|++.|.+++++|+|++...+ .|.+.+.+...+++++|+
T Consensus 241 g~lt~~~~~~~~DGAaavvl~s~~~A~~~~~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~ 303 (394)
T PRK06445 241 GVITAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGV-----PPAIMGKGPVPASKKALE 303 (394)
T ss_pred CcEecCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCchhcchHHHHHHHHHH
Confidence 2 2259999999999999999999999999999998764 344445566677777764
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-10 Score=115.95 Aligned_cols=166 Identities=25% Similarity=0.344 Sum_probs=112.8
Q ss_pred EEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcch
Q 012867 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (454)
Q Consensus 167 IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~e 245 (454)
+.|+|+|...|.- .+.+++.+.+ |.. ...+ +...++ +...+..+ + .....|+.+|+++
T Consensus 2 ~~I~~i~~~lP~~~~~~~~~~~~~--~~~-~~~~--~~~~Gi-----------~~r~~~~~-~----~~~~~la~~A~~~ 60 (320)
T cd00830 2 ARILGIGSYLPERVVTNDELEKRL--DTS-DEWI--RTRTGI-----------RERRIADP-G----ETTSDLAVEAAKK 60 (320)
T ss_pred CEEEEEEEECCCcEEcHHHHHHHc--CCC-HHHh--hhccCc-----------eEEeeCCC-C----CCHHHHHHHHHHH
Confidence 6799999999987 5667776655 111 0000 000000 00001111 0 2346799999999
Q ss_pred hhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC-cCCCccee
Q 012867 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW-MGPNYSIS 324 (454)
Q Consensus 246 ALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl-~Gps~tv~ 324 (454)
||+++|++++ +++ .|++++...++ .....+.+|+..+|+ ..|.+.|+
T Consensus 61 al~~ag~~~~---~Id----~li~~~~~~~~-------------------------~~~~~~~~l~~~lg~~~~~~~~v~ 108 (320)
T cd00830 61 ALEDAGIDAD---DID----LIIVATSTPDY-------------------------LFPATACLVQARLGAKNAAAFDIN 108 (320)
T ss_pred HHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCCcHHHHHHHHhCCCCCcEeecc
Confidence 9999999876 333 56666543211 012246789999999 56888999
Q ss_pred ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeeeh
Q 012867 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (454)
Q Consensus 325 tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalvL 404 (454)
.+|+|++.||+.|.++|+.|.++.+||+++|.+. .. + -|+....++++|||++++||
T Consensus 109 ~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~------------~~~~~~~~~~~GDgAaA~ll 165 (320)
T cd00830 109 AACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLS-RI----------L------------DWTDRSTAVLFGDGAGAVVL 165 (320)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhc-cc----------c------------CcccCCceEEEeccceEEEE
Confidence 9999999999999999999999999999999732 11 0 13444578999999999999
Q ss_pred HHhH
Q 012867 405 EELE 408 (454)
Q Consensus 405 e~l~ 408 (454)
++.+
T Consensus 166 ~~~~ 169 (320)
T cd00830 166 EATE 169 (320)
T ss_pred EecC
Confidence 9743
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-10 Score=120.67 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=71.6
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
.|+.++++++|+++|++++ +++ -|++|+...... .....+..++...|+
T Consensus 30 dLa~~A~~~al~~agi~p~---~ID----~vi~G~~~~~~~------------------------~~~~~~r~a~~~~Gl 78 (402)
T PRK08242 30 RLAAGLLEALRDRNGLDTA---AVD----DVVLGCVTPVGD------------------------QGADIARTAVLAAGL 78 (402)
T ss_pred HHHHHHHHHHHHHcCCCHH---HcC----EEEEEecCCCcc------------------------ccccHHHHHHHHcCC
Confidence 4778899999999999987 333 688887642110 012234445566787
Q ss_pred --cCCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 317 --MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 317 --~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
+-|.++|+.+|+|++.||+.|+++|++|++|.+|+||+|.+..
T Consensus 79 ~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~ 123 (402)
T PRK08242 79 PETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSR 123 (402)
T ss_pred CCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCC
Confidence 3489999999999999999999999999999999999998653
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-10 Score=117.69 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=71.5
Q ss_pred HHHHHHhcchhhh-cCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l~aa~eALe-dAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..|..+++++||+ ++|++++ +++ .|++|+..... .....++..++...
T Consensus 28 ~~L~~~~~~~al~~~agl~~~---~Id----~vi~g~~~~~~------------------------~~g~~~ar~~~~~~ 76 (387)
T PRK08947 28 EDLSAHLMRSLLARNPALDPA---EID----DIIWGCVQQTL------------------------EQGFNIARNAALLA 76 (387)
T ss_pred HHHHHHHHHHHHHhccCcChH---HhC----eEEEEeccccc------------------------cccccHHHHHHHHc
Confidence 4577888999999 5899887 344 68888652100 00012344577888
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
|+. -|.++|+++|+||+.||+.|+++|++|++|++||||+|.+..
T Consensus 77 Gl~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~ 123 (387)
T PRK08947 77 GIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGH 123 (387)
T ss_pred CCCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEcccccccc
Confidence 886 377999999999999999999999999999999999998653
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-10 Score=115.37 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=110.8
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
.+.|.|+|...|.- .+.+++.+........+. +..+...+ .+..+. .....|+.++++
T Consensus 4 ~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~-----~~~Gi~~r-----------~~~~~~-----~~~~~la~~A~~ 62 (325)
T PRK12879 4 YARITGIGTYVPPRVLTNDDLETFIDTSDEWIV-----QRTGIKER-----------RIAHVE-----EYTSDLAIKAAE 62 (325)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhh-----hccCceEE-----------EECCCC-----CCHHHHHHHHHH
Confidence 47899999999998 566766654321000000 00011000 001111 124568999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-CCCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-Gps~tv 323 (454)
+||+++|++++ +++ .|++++...++ .....+.+|+..+|++ .+.+.|
T Consensus 63 ~al~~ag~~~~---~Id----~li~~~~~~~~-------------------------~~~~~a~~l~~~lg~~~~~~~~v 110 (325)
T PRK12879 63 RALARAGLDAE---DID----LIIVATTTPDY-------------------------LFPSTASQVQARLGIPNAAAFDI 110 (325)
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCChHHHHHHHHhCCCCCcEEEE
Confidence 99999999876 332 46666543211 1112467899999997 488999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+.+|+|++.||+.|.++|++|.++.+||+++|.+... + .++.....+++|||++++|
T Consensus 111 ~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~-----------~------------~~~~~~~~~~~GDgAaA~l 167 (325)
T PRK12879 111 NAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKV-----------T------------DYTDRTTCILFGDGAGAVV 167 (325)
T ss_pred CccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCc-----------C------------CccccCceEEEeecceEEE
Confidence 9999999999999999999999999999999972110 0 0111234688999999999
Q ss_pred hHHhH
Q 012867 404 LEELE 408 (454)
Q Consensus 404 Le~l~ 408 (454)
|++.+
T Consensus 168 l~~~~ 172 (325)
T PRK12879 168 LEATE 172 (325)
T ss_pred EEecC
Confidence 99743
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-10 Score=119.47 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=68.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ .|++|+...... ....+...+...|
T Consensus 32 ~eL~~~a~~~aL~~Agi~~~---dID----~vi~G~~~~~~~-------------------------~~~~~~~~~l~ag 79 (397)
T PRK06954 32 PQLGAAAIAAAVERAGLKPE---QID----EVVMGCVLPAGQ-------------------------GQAPARQAALGAG 79 (397)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEEecCCCcc-------------------------chHHHHHHHHcCC
Confidence 45888999999999999987 333 688887532111 0111222333445
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+ +-|.++|+.+|+||+.||+.|+++|++|++|++||+|+|.+.
T Consensus 80 ~~~~~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms 124 (397)
T PRK06954 80 LPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMT 124 (397)
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccC
Confidence 5 347799999999999999999999999999999999999865
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-10 Score=119.13 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=73.1
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+++|++++ +++ .||+|+.....+ ...++..++..+|
T Consensus 27 ~eLa~~A~~~aL~~agl~~~---dID----~vi~g~~~~~~~-------------------------~~~~~~~~~~~~G 74 (393)
T PRK08235 27 TELGGIAIKEALERANVSAE---DVE----EVIMGTVLQGGQ-------------------------GQIPSRQAARAAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccCCC-------------------------CCCHHHHHHHHcC
Confidence 35788999999999999987 344 788887632100 0123445678889
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
+. -|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+..
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~ 120 (393)
T PRK08235 75 IPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSN 120 (393)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeecccc
Confidence 84 489999999999999999999999999999999999997654
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-10 Score=115.19 Aligned_cols=119 Identities=21% Similarity=0.226 Sum_probs=92.6
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+++++||+++|++++ +++ .|++|+...... ....+.+|+..+
T Consensus 48 ~~~l~~~a~~~aL~~ag~~~~---~Id----~li~~~~~~~~~-------------------------~~~~~~~i~~~l 95 (324)
T cd00827 48 VPTMAVEAARRALERAGIDPD---DIG----LLIVATESPIDK-------------------------GKSAATYLAELL 95 (324)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEcCCCCCC-------------------------CccHHHHHHHHc
Confidence 356889999999999999876 333 577776532110 122467889999
Q ss_pred cC-cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 315 GW-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 315 gl-~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
|+ ..|.++|+.+|+|++.||..|+++|++|.++.+||+|+|.+.... .+.+.+++
T Consensus 96 g~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~------------------------~~~~~~~~ 151 (324)
T cd00827 96 GLTNAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLL------------------------DEGSALEP 151 (324)
T ss_pred CCCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc------------------------cCCCCccc
Confidence 99 468999999999999999999999999999999999999732111 13456789
Q ss_pred eeecCceeeehHHhHH
Q 012867 394 VMGEGAGVLLLEELEH 409 (454)
Q Consensus 394 v~GEGaaalvLe~l~~ 409 (454)
++|||++++||++.+.
T Consensus 152 ~~gdgaaA~ll~~~~~ 167 (324)
T cd00827 152 TLGDGAAAMLVSRNPG 167 (324)
T ss_pred cccCceEEEEEecCcc
Confidence 9999999999997543
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-10 Score=114.01 Aligned_cols=164 Identities=18% Similarity=0.254 Sum_probs=108.0
Q ss_pred EEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcch
Q 012867 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (454)
Q Consensus 167 IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~e 245 (454)
|-|+|+|...|.- .+.+++-+.+......|. .+ .+...+ .+..+. .....|+.+++++
T Consensus 3 v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~--~~---~gi~~r-----------~~~~~~-----~~~~~la~~A~~~ 61 (326)
T CHL00203 3 VHILSTGSSVPNFSVENQQFEDIIETSDHWIS--TR---TGIKKR-----------HLAPSS-----TSLTKLAAEAANK 61 (326)
T ss_pred cEEEEEEEECCCeEEcHHHHHHhcCCChhhEe--ec---cCeEEE-----------EeCCCC-----CCHHHHHHHHHHH
Confidence 6799999999998 566666554421000010 00 000000 011111 1235689999999
Q ss_pred hhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCccee
Q 012867 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSIS 324 (454)
Q Consensus 246 ALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~tv~ 324 (454)
||+++|++++ +++ .|++|+...+. .. ..+..++..+|+++ +.+.|.
T Consensus 62 aL~~ag~~~~---dId----~vi~~s~~~~~---------------------~~-----~~~~~v~~~Lg~~~~~~~~v~ 108 (326)
T CHL00203 62 ALDKAHMDPL---EID----LIILATSTPDD---------------------LF-----GSASQLQAEIGATRAVAFDIT 108 (326)
T ss_pred HHHHcCCCHH---HCC----EEEEEeCCCCC---------------------CC-----chHHHHHHHhCCCCCceeeec
Confidence 9999999886 333 56677643211 00 01356888889876 678999
Q ss_pred ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeeeh
Q 012867 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (454)
Q Consensus 325 tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalvL 404 (454)
.+|+|++.||+.|.++|++|.++.+||+|+|.+. .. -+++...+.+++|||++++||
T Consensus 109 ~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s-~~----------------------~~~~~~~~~~~fgDga~A~ll 165 (326)
T CHL00203 109 AACSGFILALVTATQFIQNGSYKNILVVGADTLS-KW----------------------IDWSDRKTCILFGDGAGAAII 165 (326)
T ss_pred ccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhh-Cc----------------------CCcccCCceEEEcceeeEEEE
Confidence 9999999999999999999999999999999721 11 011222357899999999999
Q ss_pred HHh
Q 012867 405 EEL 407 (454)
Q Consensus 405 e~l 407 (454)
++.
T Consensus 166 ~~~ 168 (326)
T CHL00203 166 GAS 168 (326)
T ss_pred EEc
Confidence 863
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-10 Score=116.81 Aligned_cols=185 Identities=22% Similarity=0.332 Sum_probs=117.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+..+++.. . ... .+..+...++
T Consensus 23 ~eL~~eA~~~AL~dAgl~~~---dId----~vi~g~~~~~~~~----------------~-----~~~--~~~~~~~~~g 72 (389)
T PRK07516 23 ESLIVRVAREALAHAGIAAG---DVD----GIFLGHFNAGFSP----------------Q-----DFP--ASLVLQADPA 72 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEecCCccc----------------c-----ccc--hhHHHHHhcC
Confidence 46889999999999999986 334 7888876422210 0 000 0111223446
Q ss_pred Cc-CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeec-c------------------cchh-hhhhh--
Q 012867 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-L------------------GGFV-ACRAL-- 372 (454)
Q Consensus 316 l~-Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~-~------------------~~f~-~~~~L-- 372 (454)
++ .|.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..... . ..|. .+++.
T Consensus 73 l~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 152 (389)
T PRK07516 73 LRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQ 152 (389)
T ss_pred CCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHH
Confidence 64 488999999999999999999999999999999999997532110 0 0010 01100
Q ss_pred -------------------hccc--CCCCCC-CCCccC------------------CCCceeeecCceeeehHHhHHHhh
Q 012867 373 -------------------SQRN--NDPTKA-SRPWDI------------------NRDGFVMGEGAGVLLLEELEHAKK 412 (454)
Q Consensus 373 -------------------s~~~--~~p~~~-~rpFd~------------------~adG~v~GEGaaalvLe~l~~A~~ 412 (454)
++.| .+|... -+|++. .-|--.++||++++||.+.+.|++
T Consensus 153 ~y~~~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~~~d~~~~~DGAaa~il~s~~~a~~ 232 (389)
T PRK07516 153 AYFQRYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLRRTDCSLVSDGAAALVLADAETARA 232 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCchhhcCCcCcceEEEEEecHHHHHh
Confidence 0000 112111 112211 123334689999999999999988
Q ss_pred ccceeeeeecCcceeccccccCCCCC-CCcceecccccccc
Q 012867 413 RGAKIYAEFRGGSFTSDAYHMTEPHP-DGDIMLGGVQDYHC 452 (454)
Q Consensus 413 ~G~~i~a~I~G~a~~~Dg~~~t~P~p-~g~g~~~a~~~~~~ 452 (454)
.+. +++|+|++..+|..+++..++ ...+...+++++|+
T Consensus 233 ~~~--~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 271 (389)
T PRK07516 233 LQR--AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALA 271 (389)
T ss_pred cCC--CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHH
Confidence 754 568999999988877655554 24455567776664
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-10 Score=117.79 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=72.1
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.++++++|+|+|++++ +++ .|++|+..... .....++..+....|
T Consensus 27 ~eL~~~a~~~aL~~agi~~~---~Id----~v~~G~~~~~~------------------------~q~~~~ar~~~l~~G 75 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDPG---DVE----QVIGGCVTQAG------------------------EQSNNITRTAWLHAG 75 (387)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccc------------------------cccchHHHHHHHhCC
Confidence 45788999999999999987 344 68888652100 000113445566678
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+..
T Consensus 76 l~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~ 121 (387)
T PRK07850 76 LPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSR 121 (387)
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCC
Confidence 85 389999999999999999999999999999999999998754
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-10 Score=114.81 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=109.1
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
..+.|+|+|...|.- .+.+++-+.+......|.+ ..++..+ .+..+. .....|+.+|+
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~-----~tGi~~R-----------~~~~~~-----~~~~~La~~Aa 104 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIAT-----RTGIRNR-----------RVLSGD-----ETLTSLAVEAA 104 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhheec-----ccCcceE-----------eecCCC-----CCHHHHHHHHH
Confidence 468899999999998 5666665433211111100 0011000 011111 12457999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~t 322 (454)
++||+++|++++ +++ -|++++..+.. . . ..+..|...+|+++ |.+.
T Consensus 105 ~~aL~~agi~~~---dId----~li~~s~~~~~---------------------~----~-~~a~~v~~~LG~~~~~~~d 151 (379)
T PLN02326 105 KKALEMAGVDPE---DVD----LVLLCTSSPDD---------------------L----F-GSAPQVQAALGCTNALAFD 151 (379)
T ss_pred HHHHHHcCCCHH---HCC----EEEEEeCCCCc---------------------c----C-cHHHHHHHHhCCCCCceee
Confidence 999999999875 222 35555442111 0 0 13567889999976 6789
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|..+|+|++.||+.|.++|+.|.++.+||+|+|.+. .. + .|+...+.+++|||++++
T Consensus 152 v~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~s-~~----------~------------~~~d~~~~~lfGDGAaAv 208 (379)
T PLN02326 152 LTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALS-RY----------V------------DWTDRGTCILFGDGAGAV 208 (379)
T ss_pred ccccchHHHHHHHHHHHHHHcCCCCEEEEEEechhc-CC----------C------------CccccCceEEEcceeEEE
Confidence 999999999999999999999999999999999721 00 0 122334567999999999
Q ss_pred ehHHh
Q 012867 403 LLEEL 407 (454)
Q Consensus 403 vLe~l 407 (454)
||++.
T Consensus 209 lL~~~ 213 (379)
T PLN02326 209 VLQAC 213 (379)
T ss_pred EEEEc
Confidence 99974
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-10 Score=114.51 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=69.8
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+++++||+|+|++++ +++ ++++|+..++.. ....+...+
T Consensus 22 ~~~La~~A~~~Al~dAGl~~~---dID----~~~~g~~~~~~~----------------------------~~~~~~~~l 66 (391)
T PRK08256 22 YPDMAAEAGRAALADAGIDYD---AVQ----QAYVGYVYGDST----------------------------SGQRALYEV 66 (391)
T ss_pred HHHHHHHHHHHHHHHcCCChH---HCC----eeEEEEEeCCcc----------------------------hhHHHHHHc
Confidence 357899999999999999876 444 456665432110 001245578
Q ss_pred cCcC-CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 315 gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
|++| |.++|+++|+|++.||..|+++|++|++|.+||+|+|.+
T Consensus 67 Gl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~ 110 (391)
T PRK08256 67 GMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQM 110 (391)
T ss_pred CCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeec
Confidence 9988 999999999999999999999999999999999999975
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-10 Score=110.23 Aligned_cols=93 Identities=28% Similarity=0.339 Sum_probs=71.1
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.++++++|+++|++++ .++ .|++|+..+... ...++..++...|
T Consensus 27 ~~L~~~a~~~al~~~~i~~~---~Id----~v~~G~~~~~~~-------------------------g~~~ar~~~l~aG 74 (264)
T PF00108_consen 27 EDLAAEAVKAALERAGIDPE---DID----AVIVGNVLQEGE-------------------------GQNIARQAALAAG 74 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHGG---GEE----EEEEE-SSSCTT-------------------------TCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccchh---hhh----hcCccccccccc-------------------------chhhhhhhhhhcc
Confidence 45788899999999999886 344 689998743221 2223555666677
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeee
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p 360 (454)
| +-|.++|+.+|+||+.||++|++.|++|+.|++||||+|.+...
T Consensus 75 l~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~ 121 (264)
T PF00108_consen 75 LPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRV 121 (264)
T ss_dssp S-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTS
T ss_pred cccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEecccccccc
Confidence 7 34899999999999999999999999999999999999997543
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-09 Score=110.68 Aligned_cols=179 Identities=20% Similarity=0.193 Sum_probs=113.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|||++++ +++ ++++++... . .....++..+|
T Consensus 29 ~eL~~eA~~~Al~dAgl~~~---dID----~iv~~~~~~--------------------~---------~~~~~la~~lG 72 (384)
T PRK06158 29 MELLAQAAHRALADAGLTMA---DVD----GLFTASPDD--------------------A---------LWGLSVAEYLG 72 (384)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEecCCC--------------------C---------CcHHHHHHHcC
Confidence 35889999999999999886 344 677765310 0 01235778889
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeec-CCCceee---------------eecccchhh-hhh------
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCG-GSDAAVI---------------PIGLGGFVA-CRA------ 371 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvG-Gvd~~l~---------------p~~~~~f~~-~~~------ 371 (454)
+++ |.+.+.++|+|+..+|+.|++.|++|.+|.+||+ |.+.+.. |.....+.. ..+
T Consensus 73 l~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ym 152 (384)
T PRK06158 73 IRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAARHM 152 (384)
T ss_pred CCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHHHH
Confidence 975 7788899999999999999999999999999974 7664211 000000000 000
Q ss_pred ------------h---hccc--CCCCC----------------CCCCccCCCCceeeecCceeeehHHhHHHhhccceee
Q 012867 372 ------------L---SQRN--NDPTK----------------ASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIY 418 (454)
Q Consensus 372 ------------L---s~~~--~~p~~----------------~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~ 418 (454)
+ .+.+ .+|.- .+.|+.. .|...++||++++||.+.+.|++.+++.
T Consensus 153 ~~yG~t~e~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~~-~d~~~~~DGAaAvVL~s~e~A~~l~~~~- 230 (384)
T PRK06158 153 HQYGTTREQLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLSV-RDCCLVTDGAGAVVMVRADRARDLPRPP- 230 (384)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCch-hhcCCccCCeEEEEEecHHHHhhcCCCc-
Confidence 0 0000 11211 1223322 3556789999999999999998866542
Q ss_pred eeecCcceeccccccC-CCCCCCcceecccccccc
Q 012867 419 AEFRGGSFTSDAYHMT-EPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 419 a~I~G~a~~~Dg~~~t-~P~p~g~g~~~a~~~~~~ 452 (454)
..|+|++..++..++. .|+........+++++|+
T Consensus 231 v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~ 265 (384)
T PRK06158 231 VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFA 265 (384)
T ss_pred EEEEEEEEecCCcccccccchhhhHHHHHHHHHHH
Confidence 4588888777765443 233333344566676664
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-09 Score=109.32 Aligned_cols=186 Identities=19% Similarity=0.195 Sum_probs=117.6
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+.+||+|||++++ +++ ++++++. .++ +.+. ...+..++..+|
T Consensus 25 ~eL~~eAa~~Al~dAgl~~~---dID----~iv~~~~-~~~---------------------~~~~--~~~~~~va~~LG 73 (386)
T PRK08313 25 AGLVREAIDRALADAGLTWD---DID----AVVVGKA-PDF---------------------FEGV--MMPELFLADALG 73 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEecc-ccc---------------------cccc--cCchHHHHHhcC
Confidence 35889999999999999876 344 6777752 111 0000 112357889999
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeeccc------------c--------------hhh
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG------------G--------------FVA 368 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~------------~--------------f~~ 368 (454)
+++ |.+.|+++|+|+..+++.|+++|++|++|.+||.|+|.+.+..... + +.+
T Consensus 74 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~ 153 (386)
T PRK08313 74 ATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRR 153 (386)
T ss_pred CCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 976 8889999999999999999999999999999999998643210000 0 000
Q ss_pred hhh----hhc------cc--CCCCCCCC-C-ccCC--------------CCceeeecCceeeehHHhHHHhhccceeeee
Q 012867 369 CRA----LSQ------RN--NDPTKASR-P-WDIN--------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420 (454)
Q Consensus 369 ~~~----Ls~------~~--~~p~~~~r-p-Fd~~--------------adG~v~GEGaaalvLe~l~~A~~~G~~i~a~ 420 (454)
.|. |+. .| .+|.-..| | ++.+ -|=..+.||++++||.+.+.|++-+.+..++
T Consensus 154 ~G~~~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~ 233 (386)
T PRK08313 154 SGAPEHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAW 233 (386)
T ss_pred HCcCHHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeE
Confidence 010 000 00 12221111 1 2211 1222368999999999999998777777789
Q ss_pred ecCcceeccccccCCC-CCCCcceecccccccc
Q 012867 421 FRGGSFTSDAYHMTEP-HPDGDIMLGGVQDYHC 452 (454)
Q Consensus 421 I~G~a~~~Dg~~~t~P-~p~g~g~~~a~~~~~~ 452 (454)
|+|++..+|...+... .....+...+.+++|+
T Consensus 234 I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 266 (386)
T PRK08313 234 IHGTAMRTEPLAFAGRDQVNPQAGRDAAAALWK 266 (386)
T ss_pred EEEEEEEecCcccccccccccHHHHHHHHHHHH
Confidence 9999988776544222 1223334455555553
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-09 Score=108.49 Aligned_cols=92 Identities=28% Similarity=0.397 Sum_probs=71.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ .|++|+.... ....+..+..++..+|
T Consensus 24 ~~La~~A~~~Al~dAgl~~~---dId----~vi~~~~~~~------------------------~~~~~~~a~~va~~lG 72 (399)
T PRK06059 24 VEYGVVAARAALADAGLDWR---DVQ----LVVGADTIRN------------------------GYPGFVAGATFAQALG 72 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCC------------------------ccCCccHHHHHHHHhC
Confidence 45788999999999999876 333 4555543210 0001123567899999
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+++ |.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.
T Consensus 73 ~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s 116 (399)
T PRK06059 73 WNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTP 116 (399)
T ss_pred CCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccC
Confidence 988 8999999999999999999999999999999999999754
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-09 Score=103.53 Aligned_cols=119 Identities=24% Similarity=0.231 Sum_probs=86.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+++||++||++++ +++ .+|+|... . ..+.+..++..+|
T Consensus 51 ~eLa~eAa~~ALekAGL~~~---DID----~IIvGdl~--------------------------~--Q~~~As~vA~~LG 95 (327)
T TIGR02845 51 RKLMEDAVNLALKKANLKKD---DVD----FFLAGDLL--------------------------N--QIITANFVARDLG 95 (327)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEeCCC--------------------------C--cccHHHHHHHHhC
Confidence 46889999999999999986 333 46666421 0 0124677888888
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCc--cCCCCce
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW--DINRDGF 393 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpF--d~~adG~ 393 (454)
+ |.+.|.++|+|+..||..|..+|++|.+|.+||++.+...+.+....| |. .| .+...-.
T Consensus 96 I--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqfr~------------p~----eyg~q~~~ta~ 157 (327)
T TIGR02845 96 I--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQFRY------------PT----EYGVQKPPTAQ 157 (327)
T ss_pred C--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhccc------------cc----ccccCCCCeee
Confidence 6 889999999999999999999999999999999999873322211000 10 12 1233556
Q ss_pred eeecCceeeehHHh
Q 012867 394 VMGEGAGVLLLEEL 407 (454)
Q Consensus 394 v~GEGaaalvLe~l 407 (454)
..|+|+|++||++.
T Consensus 158 ~tgdGAGA~vl~~~ 171 (327)
T TIGR02845 158 WTVTGAGAVLLAST 171 (327)
T ss_pred EEEcccEEEEEeec
Confidence 79999999999874
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-09 Score=108.45 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=71.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+++||+|+|++++ +++ ++|+++....+ .+ ....+..++..+|
T Consensus 30 ~~L~~~A~~~Al~dagl~~~---dID----~~i~~~~~~~~----------------------~~--~~~~a~~l~~~lG 78 (392)
T PRK06065 30 QELAWEAASKALDEAGLELK---DID----CVVIGSAPDAF----------------------DG--VHMKGEYLSHGSG 78 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccCCcc----------------------cc--cccHHHHHHHHcC
Confidence 35889999999999999987 444 67777531100 00 1123556888888
Q ss_pred Cc-CCCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~-Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+. .|.+.|+++|+|+..||..|+++|++|.+|.+||+|+|.+
T Consensus 79 ~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~ 121 (392)
T PRK06065 79 GIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKM 121 (392)
T ss_pred CCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecc
Confidence 87 4899999999999999999999999999999999998864
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-08 Score=103.39 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=86.3
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ -|++++...++ .....+.+|+..+
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~---~Id----~li~~t~~~d~-------------------------~~p~~a~~v~~~L 99 (326)
T PRK05963 52 LSDLAASAGDMALSDAGIERS---DIA----LTLLATSTPDH-------------------------LLPPSAPLLAHRL 99 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCCCC-------------------------CCCcHHHHHHHHh
Confidence 357999999999999999886 333 46666653221 1122367899999
Q ss_pred cCcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 315 gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
|+.. +++.|..+|++++.||+.|..+|+.|. +.+||.++|.. +. .+. + +....++
T Consensus 100 g~~~~~~~di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~-s~----------~~~-----~-------~~~~~~~ 155 (326)
T PRK05963 100 GLQNSGAIDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANIL-SR----------RIN-----M-------AERASAV 155 (326)
T ss_pred CCCCCceeeccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechh-hc----------cCC-----c-------cccCceE
Confidence 9954 788899999999999999999999985 88999888862 10 011 1 1123578
Q ss_pred eeecCceeeehHHh
Q 012867 394 VMGEGAGVLLLEEL 407 (454)
Q Consensus 394 v~GEGaaalvLe~l 407 (454)
++|||++++||++.
T Consensus 156 lfGDgA~A~ll~~~ 169 (326)
T PRK05963 156 LFADAAGAVVLAPS 169 (326)
T ss_pred EEeecceEEEEEec
Confidence 99999999999863
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.6e-09 Score=104.14 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=83.5
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecc-cCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSG-LGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
...|+.+|+++||+++|++++ +++ .+++.++ ..++ .....+.+|+..
T Consensus 53 ~~~la~~Aa~~aL~~ag~~~~---dId----~li~~~~~~~~~-------------------------~~p~~a~~l~~~ 100 (339)
T PRK06840 53 TSDMAIAAAKPALKQAGVDPA---AID----VVIYIGSEHKDY-------------------------PVWSSAPKIQHE 100 (339)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccCCCCC-------------------------CCCchHHHHHHH
Confidence 456899999999999999886 222 3433322 1111 111235789999
Q ss_pred ccCcC-CCcceeccccccceeeeccccceec-cccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC
Q 012867 314 LGWMG-PNYSISTACATSNFCILNAANHIIR-GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (454)
Q Consensus 314 ~gl~G-ps~tv~tACsSsl~AI~~A~~~I~~-G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad 391 (454)
+|++. +.+.|..+|++++.||..|.++|++ |.++.+||.+.|.. +.. + .|+....
T Consensus 101 lGl~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~-s~~----------~------------~~~~~~~ 157 (339)
T PRK06840 101 IGAKNAWAFDIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRN-SDL----------V------------DYDNPRT 157 (339)
T ss_pred hCCCCcccccccccchHHHHHHHHHHHHHhcCCCccEEEEEeeccc-ccc----------c------------CcCCCCe
Confidence 99975 7888999999999999999999999 99999999888752 110 0 1111223
Q ss_pred ce--eeecCceeeehHHh
Q 012867 392 GF--VMGEGAGVLLLEEL 407 (454)
Q Consensus 392 G~--v~GEGaaalvLe~l 407 (454)
++ .+|||++++||++.
T Consensus 158 ~~~~~~GDgAaA~ll~~~ 175 (339)
T PRK06840 158 RFMFNFAAGGSAALLKKD 175 (339)
T ss_pred eeeccCCCceeEEEEEec
Confidence 43 36999999999863
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-08 Score=104.58 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=87.3
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+.+||+++|++++ +++ .|++++..+++ .....+.+|+..+
T Consensus 60 ~~~la~~Aa~~aL~~a~~~~~---dId----~lI~~t~t~d~-------------------------~~P~~a~~v~~~L 107 (353)
T PRK12880 60 VSDLGKHAANTLLQGLNIDKN---SLD----ALIVVTQSPDF-------------------------FMPSTACYLHQLL 107 (353)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCCcHHHHHHHHh
Confidence 457999999999999999986 333 56666653222 2234578999999
Q ss_pred cCcC--CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCc
Q 012867 315 GWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (454)
Q Consensus 315 gl~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG 392 (454)
|++. +.+.|..+|++++.||+.|.++|++|..+ +|+.++|.. |. +--++....-
T Consensus 108 g~~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~---------------S~--------~~~~~d~~~~ 163 (353)
T PRK12880 108 NLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTL---------------SK--------FIHPKNMNLA 163 (353)
T ss_pred CCCCCceEEehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhh---------------hc--------cCCcccCCce
Confidence 9963 67899999999999999999999999999 888888862 21 0001112235
Q ss_pred eeeecCceeeehHHh
Q 012867 393 FVMGEGAGVLLLEEL 407 (454)
Q Consensus 393 ~v~GEGaaalvLe~l 407 (454)
.++||||+++||++.
T Consensus 164 ~lFGDGAaA~vl~~~ 178 (353)
T PRK12880 164 PIFGDGVSATLIEKT 178 (353)
T ss_pred eeecccceEEEEEec
Confidence 689999999999853
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-08 Score=103.85 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=117.7
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccc-----cCCcc-ccc-ccCCCCccccccc---ccccccCc----c--ccch
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGV-----SGISE-IET-FDCTSFPTKIAAE---IKSFSTDG----W--VAPK 227 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~-----s~i~~-~~~-~~~~~~~~~~~g~---i~~fd~~~----f--i~~~ 227 (454)
.+..|.|+|...|.- ...+++++.+.+-- ..... +.+ |+..+...++... ..+..+.+ . +..+
T Consensus 14 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r 93 (389)
T PLN03168 14 GPACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVR 93 (389)
T ss_pred CCeEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHH
Confidence 457799999999998 45555555443321 11111 111 2222222222111 00001111 0 2233
Q ss_pred hhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccch
Q 012867 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (454)
Q Consensus 228 ~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 307 (454)
.....+-...|+.+|+.+||+++|+++++ ++ .|++.++.+ + .. ...+
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~d---Id----~lI~~T~Tg---------------------~----~~-Ps~a 140 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSD---IT----HIVFATTSG---------------------V----NM-PGAD 140 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHH---CC----EEEEECCCC---------------------C----CC-ccHH
Confidence 33344455679999999999999999863 33 566776632 1 11 2247
Q ss_pred hHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCC
Q 012867 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (454)
Q Consensus 308 ~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~r 384 (454)
.+|+..+|++.- .+.+..+|++++.||..|.++|++|....+||.++|.+. . .+ . .++. .
T Consensus 141 ~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S-~-~~---------~----~~~~--~ 203 (389)
T PLN03168 141 HALAKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTA-V-TY---------R----APSE--N 203 (389)
T ss_pred HHHHHHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhh-h-hc---------c----Cccc--c
Confidence 889999999763 588999999999999999999999999999999999732 1 10 0 0100 0
Q ss_pred CccCCCCceeeecCceeeehHHh
Q 012867 385 PWDINRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 385 pFd~~adG~v~GEGaaalvLe~l 407 (454)
..+..-...++|||||++||+..
T Consensus 204 ~~~~~~~~~LFGDGAaAvvl~~~ 226 (389)
T PLN03168 204 HLDGLVGSALFGDGAGVYVVGSD 226 (389)
T ss_pred cHHHHhccccccCccEEEEEecC
Confidence 01111245779999999999863
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-08 Score=104.31 Aligned_cols=192 Identities=11% Similarity=0.126 Sum_probs=116.7
Q ss_pred ceEEEecccccccCC-CCchhHHhhhh---cc--ccCCcc-ccc-ccCCCCccccccc----ccccccCcc------ccc
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLL---EG--VSGISE-IET-FDCTSFPTKIAAE----IKSFSTDGW------VAP 226 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~---~G--~s~i~~-~~~-~~~~~~~~~~~g~----i~~fd~~~f------i~~ 226 (454)
.+..|.|+|..+|.- ...+++++.+. +. ...+.. +.+ |+..+...+.... ++.+ +.++ +..
T Consensus 15 ~~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~-~~~~~~~~p~~~~ 93 (393)
T PLN03172 15 GPATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKEN-PNMCAYMAPSLDA 93 (393)
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhC-ccccccCCCCHHH
Confidence 447899999999998 55555555443 21 111221 111 2223333232211 1111 1111 223
Q ss_pred hhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccc
Q 012867 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306 (454)
Q Consensus 227 ~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (454)
+....+.-...|+.+|+.+||+++|++++ +++ .|++.++.+ +.+ ...
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~---dId----~ii~~t~t~---------------------~~~-----P~~ 140 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKS---KIT----HLVFCTTSG---------------------VDM-----PGA 140 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEccCC---------------------CcC-----chH
Confidence 33334445568999999999999999876 222 455666532 111 125
Q ss_pred hhHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCC
Q 012867 307 SAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383 (454)
Q Consensus 307 a~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~ 383 (454)
+.+|...+|++.- .+.+..+|++++.+|..|.++++.|....+||.++|.+. .. + .. ++.
T Consensus 141 a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S-~~-~--------~~-----~~d-- 203 (393)
T PLN03172 141 DYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITA-VT-F--------RG-----PSD-- 203 (393)
T ss_pred HHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh-hh-h--------cc-----ccc--
Confidence 7889999999863 256789999999999999999999999999999999732 00 0 00 100
Q ss_pred CCccCCCCceeeecCceeeehHHh
Q 012867 384 RPWDINRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 384 rpFd~~adG~v~GEGaaalvLe~l 407 (454)
+..+.--...++||||+++||++.
T Consensus 204 ~~~~~~v~~~LFGDGAaAvVl~~~ 227 (393)
T PLN03172 204 THLDSLVGQALFGDGAAAVIIGAD 227 (393)
T ss_pred ccHHhhhccchhcCceEEEEEecC
Confidence 000001135679999999999863
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.8e-09 Score=105.97 Aligned_cols=179 Identities=18% Similarity=0.109 Sum_probs=112.7
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|||++++ +++ +++.+.. . .. . ....++..+|
T Consensus 26 ~~L~~eA~~~Al~DAgl~~~---dID----~~~~~~~---~-----------------~~-----~----~~~~~~~~lG 69 (388)
T PRK08142 26 AQLHAEVAKGALADAGLSLA---DVD----GYFCAGD---A-----------------PG-----L----GPASMVDYLG 69 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEcCC---C-----------------CC-----c----cHHHHHHhCC
Confidence 45889999999999999876 344 3433111 0 00 0 0134788899
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeee---c----cc------chhh-hh--------hh
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---G----LG------GFVA-CR--------AL 372 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~---~----~~------~f~~-~~--------~L 372 (454)
+++ |...+.++|+|+..+|..|+++|++|++|.+||+|+|.+.+.. . +. .|.. .+ ++
T Consensus 70 l~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~ 149 (388)
T PRK08142 70 LKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMC 149 (388)
T ss_pred CCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHH
Confidence 976 7888999999999999999999999999999999988643210 0 00 0000 00 00
Q ss_pred hc---------------------cc--CCCCCC-CCCccCC--------------CCceeeecCceeeehHHhHHHhhcc
Q 012867 373 SQ---------------------RN--NDPTKA-SRPWDIN--------------RDGFVMGEGAGVLLLEELEHAKKRG 414 (454)
Q Consensus 373 s~---------------------~~--~~p~~~-~rpFd~~--------------adG~v~GEGaaalvLe~l~~A~~~G 414 (454)
.+ .| .+|.-. -+|++.+ -|-..++||++++||.+.+.|++.+
T Consensus 150 a~~ym~~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l~ 229 (388)
T PRK08142 150 AMRHMHEYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSLK 229 (388)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhcC
Confidence 00 00 112111 1122211 1334469999999999999998776
Q ss_pred ceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 415 AKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 415 ~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
+....|+|++..+|..+...|+........+++++|
T Consensus 230 -~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~ 265 (388)
T PRK08142 230 -RPLVKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAF 265 (388)
T ss_pred -CCCEEEEEEEEecCCccccCcccccHHHHHHHHHHH
Confidence 455789999998887654455443344445555555
|
|
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-08 Score=101.39 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHh
Q 012867 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (454)
Q Consensus 232 mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is 311 (454)
.+....|+.+|+++||+++|++++ +++ .|++.++.+.+ + ...+..+.
T Consensus 105 ~~~a~~la~~Aa~~aL~~ag~~~~---dId----~li~~t~t~~~---------------------~-----P~~a~~v~ 151 (399)
T PLN03171 105 ADAVPELAAEAAKKAIAEWGRPAA---DIT----HLVVTTNSGAH---------------------I-----PGVDFRLV 151 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEcCCCCC---------------------C-----CchHHHHH
Confidence 345567999999999999999986 332 46666653211 1 23467889
Q ss_pred hhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC
Q 012867 312 MDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (454)
Q Consensus 312 ~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~ 388 (454)
..||++.- .+.+..+|++++.+|..|.++|++|....+||.++|.+. .. +. +.... .++.
T Consensus 152 ~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s-~~----------~~-----~~d~~-~~~~ 214 (399)
T PLN03171 152 PLLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITL-LL----------FN-----GPDEG-CFQT 214 (399)
T ss_pred HHhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeccc-cc----------cC-----CCCcc-cHHh
Confidence 99999753 355667999999999999999999999999999999721 10 00 10000 0111
Q ss_pred CCCceeeecCceeeehHHhH
Q 012867 389 NRDGFVMGEGAGVLLLEELE 408 (454)
Q Consensus 389 ~adG~v~GEGaaalvLe~l~ 408 (454)
.-.+.++||||+++||++.+
T Consensus 215 ~v~~~LFGDGAaA~vl~~~~ 234 (399)
T PLN03171 215 LLNQGLFGDGAAAVIVGADA 234 (399)
T ss_pred hhccccccCccEEEEEecCC
Confidence 12367899999999999743
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-08 Score=95.58 Aligned_cols=123 Identities=19% Similarity=0.313 Sum_probs=110.5
Q ss_pred ccccchhhhhhhHHHHHHHHhcchhhhcC-CccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccc
Q 012867 222 GWVAPKLSKRMDKFMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300 (454)
Q Consensus 222 ~fi~~~~a~~mdp~~rl~l~aa~eALedA-G~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 300 (454)
.||++.+.|+|++..|++++++++++++. .++ .+++++..|++....+.++.+.++ +.++|..|..
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~~~d------------~~VfaS~~Gel~~t~~ll~~l~~~-~~lSPT~Fs~ 87 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDEQPD------------AIVFASRHGELERTFKLLEALAEE-EELSPTAFSQ 87 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccCCCC------------cEEEEeCCCcHHHHHHHHHHHHhC-CCcCccchhh
Confidence 35899999999999999999999998652 221 789999999999999888888765 5689999999
Q ss_pred cccccchhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 301 ~~~~~~a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
++.|.+++.+++..+.++|+.+|..+-.|...||..|+-.|..| ++-+|++.+|..+
T Consensus 88 SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~ 144 (218)
T PF13723_consen 88 SVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPL 144 (218)
T ss_pred hhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999 9999999999843
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-08 Score=106.19 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ .++ .||+|+..... ....++..++...|
T Consensus 30 ~eL~~~a~~~al~~agl~~~---~ID----~vi~G~~~~~~-------------------------~~~~~ar~~a~~aG 77 (428)
T PRK08963 30 VDLGKMVVGELLARSEIDPE---LIE----QLVFGQVVQMP-------------------------EAPNIAREIVLGTG 77 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccCCCC-------------------------CccHHHHHHHHHCC
Confidence 35778999999999999987 344 78998753100 01223556888999
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
+. -|.++|+++|+||+.||+.|+++|++|++|++||||+|.+..
T Consensus 78 l~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~ 123 (428)
T PRK08963 78 MNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSV 123 (428)
T ss_pred CCCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCC
Confidence 96 499999999999999999999999999999999999998753
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-08 Score=102.58 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=85.0
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ .+++++..+++. . ...+..+...+
T Consensus 50 ~~~la~~Aa~~aL~~agl~~~---dID----~li~~s~~~~~~--------------------~-----p~~a~~v~~~L 97 (345)
T TIGR00748 50 TATIGVEAARNALKRAKIDPK---DIG----AVYVGSESHPYA--------------------V-----KPTATIVAEAI 97 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCcc--------------------c-----cchHHHHHHHc
Confidence 357999999999999999986 333 566666432110 1 11256788999
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCc
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG 392 (454)
|+. -+.+.|..+|+++..||+.|.++|++|.++.+||.+.|.+. . +|+.. .=
T Consensus 98 Gl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~---------------~---~~~~~--------~~ 151 (345)
T TIGR00748 98 GATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQ---------------G---APGDA--------LE 151 (345)
T ss_pred CCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecc---------------c---CCCcc--------Cc
Confidence 985 37888999999999999999999999999999999999731 0 01111 11
Q ss_pred eeeecCceeeehHH
Q 012867 393 FVMGEGAGVLLLEE 406 (454)
Q Consensus 393 ~v~GEGaaalvLe~ 406 (454)
+..|+|++++||++
T Consensus 152 ~~~GDGAaA~vl~~ 165 (345)
T TIGR00748 152 YTAGAGGAAYIIGE 165 (345)
T ss_pred ccCCCceEEEEEcc
Confidence 45699999999985
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-08 Score=103.03 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=118.1
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccc-----cCCcc-ccc-ccCCCCcccccccc---cccccCcc------ccch
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGV-----SGISE-IET-FDCTSFPTKIAAEI---KSFSTDGW------VAPK 227 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~-----s~i~~-~~~-~~~~~~~~~~~g~i---~~fd~~~f------i~~~ 227 (454)
.+..|.|+|...|.- ...+++++.+.+-- ..... +.+ |+..+...++.... ...++.++ +..+
T Consensus 19 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 98 (401)
T PLN03170 19 GPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDAR 98 (401)
T ss_pred CCeEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHH
Confidence 347799999999998 55555666554411 11111 111 23333333322211 11111111 2223
Q ss_pred hhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccch
Q 012867 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (454)
Q Consensus 228 ~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 307 (454)
.....+-.-.|+.+|+.+||+++|++++ +++ .|++.++.+ + . ....+
T Consensus 99 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~---dId----~lI~~T~Tg-~--------------------~-----~Ps~a 145 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQKAIKEWGQPKS---KIT----HLVFCTTSG-V--------------------D-----MPGAD 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEccCC-C--------------------C-----CChHH
Confidence 3333444557999999999999999876 222 455555422 1 0 12357
Q ss_pred hHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCC
Q 012867 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (454)
Q Consensus 308 ~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~r 384 (454)
.+|...+|++.- .+.+..+|++++.+|..|.++|++|....+||.++|.+. . .+ . +++. .+
T Consensus 146 ~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S-~-~~---------~----~~~~-~~ 209 (401)
T PLN03170 146 YQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITA-V-TF---------R----GPSE-SH 209 (401)
T ss_pred HHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh-h-cc---------C----Cccc-ch
Confidence 889999999764 578999999999999999999999999999999999732 1 00 0 0110 00
Q ss_pred CccCCCCceeeecCceeeehHHh
Q 012867 385 PWDINRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 385 pFd~~adG~v~GEGaaalvLe~l 407 (454)
++..-...++||||+++||++.
T Consensus 210 -~~~~~~~~LFGDGAaAvVl~~~ 231 (401)
T PLN03170 210 -LDSMVGQALFGDGAAAVIVGAD 231 (401)
T ss_pred -hhhhhhhhhhhceeEEEEEecC
Confidence 1111234589999999999863
|
|
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-08 Score=100.15 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred HHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 234 p~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
....|+.+|+.+||+++|++++ +++ .|++.++. ++ .....+..|...
T Consensus 105 ~~~~La~~Aa~~aL~~ag~~~~---dId----~lI~~t~t-~~-------------------------~~P~~a~~l~~~ 151 (391)
T PLN03169 105 AVTQMAVEASLACIKEWGRPVS---DIT----HLVYVSSS-EA-------------------------RLPGGDLYLAKQ 151 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH---HCC----EEEEECcC-CC-------------------------CCCcHHHHHHHH
Confidence 3557999999999999999886 222 45555542 21 112236789999
Q ss_pred ccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCC
Q 012867 314 LGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (454)
Q Consensus 314 ~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~a 390 (454)
+|++.. .+.+..+|++++.||..|.++|+.|....+||.++|.. +.. |. . +. ..+ ++...
T Consensus 152 LGl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~-s~~----~~-----~-----~~-~~~-~~d~~ 214 (391)
T PLN03169 152 LGLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETT-ILG----FR-----P-----PS-PDR-PYDLV 214 (391)
T ss_pred hCcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC-hhh----cc-----C-----CC-ccc-hhhhh
Confidence 999753 47788999999999999999999999999999999972 110 00 0 00 001 12223
Q ss_pred CceeeecCceeeehHHh
Q 012867 391 DGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 391 dG~v~GEGaaalvLe~l 407 (454)
...++||||+++||+..
T Consensus 215 ~~~lFGDGAaA~vl~~~ 231 (391)
T PLN03169 215 GAALFGDGAAAVIIGAD 231 (391)
T ss_pred hhhhccCceEEEEEecC
Confidence 45689999999999864
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-08 Score=99.74 Aligned_cols=189 Identities=14% Similarity=0.199 Sum_probs=115.7
Q ss_pred EEEecccccccCC-CCchhHHhhhhccccC---------CcccccccCCCCcccccc-c--ccccccC--cc--ccchhh
Q 012867 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSG---------ISEIETFDCTSFPTKIAA-E--IKSFSTD--GW--VAPKLS 229 (454)
Q Consensus 167 IaItGmg~~~P~g-~~~~~~w~~L~~G~s~---------i~~~~~~~~~~~~~~~~g-~--i~~fd~~--~f--i~~~~a 229 (454)
+.|+|+|...|.- .+.+++++.+...... +..+ ++..+...+... + .+.+.+. .. +..+..
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRL--CAKTGIETRYLVLPGGEETYAPRPEMSPSLDERND 79 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHH--HhhcceeEEEEEecCchhhcCCccccCCCcCcchh
Confidence 5799999999998 6777777776432111 0001 000111111110 0 0000000 00 223333
Q ss_pred hhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhH
Q 012867 230 KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309 (454)
Q Consensus 230 ~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~ 309 (454)
........|+.+|+.+||+++|++++ +++ .|+++++.+ + .....+.+
T Consensus 80 ~~~~~~~~la~~Aa~~aL~~a~~~~~---~Id----~li~~s~~~-~-------------------------~~P~~a~~ 126 (361)
T cd00831 80 IALEEARELAEEAARGALDEAGLRPS---DID----HLVVNTSTG-N-------------------------PTPSLDAM 126 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHH---HCC----EEEEECCCC-C-------------------------CCCCHHHH
Confidence 44455678999999999999999876 222 455555421 1 12234678
Q ss_pred HhhhccCcC--CCccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCc
Q 012867 310 LAMDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386 (454)
Q Consensus 310 is~~~gl~G--ps~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpF 386 (454)
|...+|++. +.+.|. .+|++++.||+.|..+|+.|..+.+||.++|.... . + . ++. ..
T Consensus 127 i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~-~-~---------~-----~~d---~~ 187 (361)
T cd00831 127 LINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSL-W-Y---------R-----GPD---HR 187 (361)
T ss_pred HHHHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccc-e-e---------C-----CCC---cH
Confidence 999999974 678898 89999999999999999999999999999997321 0 0 0 110 00
Q ss_pred cCCCCceeeecCceeeehHHhHH
Q 012867 387 DINRDGFVMGEGAGVLLLEELEH 409 (454)
Q Consensus 387 d~~adG~v~GEGaaalvLe~l~~ 409 (454)
+.--..+++|||++++||++.+.
T Consensus 188 ~~~~~~~lfGDgaaA~ll~~~~~ 210 (361)
T cd00831 188 SMLVGNALFGDGAAAVLLSNDPR 210 (361)
T ss_pred HHhhhhhhccCCceEEEEEcCCC
Confidence 00003577999999999997443
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-08 Score=104.02 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=73.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+..... ....++..++..+|
T Consensus 27 ~~L~~~a~~~al~dagi~~~---dID----~vi~g~~~~~~-------------------------~~~~~a~~~~~~~G 74 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKLDPA---LVQ----EVIMGNVIQAG-------------------------VGQNPAGQAAYHAG 74 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCC-------------------------ccCcHHHHHHHHCC
Confidence 45889999999999999987 444 78888652110 01112456788899
Q ss_pred CcC--CCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+.. |.++|+++|+||+.||..|+++|++|++|++||||+|.+.
T Consensus 75 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms 119 (388)
T PRK06366 75 LPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMS 119 (388)
T ss_pred CCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccc
Confidence 964 9999999999999999999999999999999999999754
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-08 Score=103.42 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=46.6
Q ss_pred hHHhhhccCc-C-CCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 308 AMLAMDLGWM-G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 308 ~~is~~~gl~-G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
..+....|+. + |+++|+++|+||+.||..|+++|+.|++|++||||+|.+..
T Consensus 61 r~~~~~~Gl~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~ 114 (361)
T PRK06690 61 RLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTST 114 (361)
T ss_pred HHHHHHcCCCCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccC
Confidence 3467778886 4 99999999999999999999999999999999999998753
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-08 Score=102.50 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=67.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|||++++ +++ +|++|+..+++.. . ....... .. ....+
T Consensus 27 ~eLa~eA~~~AL~dAgl~~~---dID----~vi~g~~~~~~~~---------------~----~~~~~~~-~~--~~~~~ 77 (403)
T PRK06289 27 ADLTREVVDGTLAAAGVDAD---DIE----VVHVGNFFGELFA---------------G----QGHLGAM-PA--TVHPA 77 (403)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccccc---------------c----ccccchH-HH--HHhhc
Confidence 46889999999999999987 444 7888875332110 0 0000000 11 12234
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+.| |.++|+++|+|++.||+.|+.+|++|++|.+||+|+|.+
T Consensus 78 ~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~ 120 (403)
T PRK06289 78 LWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELM 120 (403)
T ss_pred CCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEec
Confidence 444 899999999999999999999999999999999998874
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-08 Score=101.24 Aligned_cols=138 Identities=19% Similarity=0.206 Sum_probs=92.0
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
.|-|+|+|...|.- .+.+++-+.+-.....|.+ ..+...+ .+..+ -.....|+.+|+.
T Consensus 2 ~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~-----~~Gi~~R-----------~~~~~-----~~~~~~la~~Aa~ 60 (347)
T PRK04262 2 MVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKR-----GLGVEEK-----------SVPGP-----DEDTATIAVEAAR 60 (347)
T ss_pred ceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhh-----ccCeeee-----------ecCCC-----CcCHHHHHHHHHH
Confidence 37799999999998 5667665543111000000 0011000 00111 1223578999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC--CCcc
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNYS 322 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G--ps~t 322 (454)
+||+++|++++ +++ .+++++..+++. . ...+.++...+|++. +.+.
T Consensus 61 ~aL~~ag~~~~---dId----~li~~s~~~~~~------------------------~-p~~a~~v~~~Lgl~~~~~~~d 108 (347)
T PRK04262 61 NALKRAGIDPK---EIG----AVYVGSESHPYA------------------------V-KPTATIVAEALGATPDLTAAD 108 (347)
T ss_pred HHHHHcCCCHH---HCC----EEEEEecCCCcc------------------------c-ccHHHHHHHHcCCCCCceEEE
Confidence 99999999886 333 566666432211 1 112567888999964 6678
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCc
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~ 356 (454)
+..+|++++.||+.|.++|++|.++.+||.++|.
T Consensus 109 v~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~ 142 (347)
T PRK04262 109 LEFACKAGTAALQAAMGLVKSGMIKYALAIGADT 142 (347)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 9999999999999999999999999999999986
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.6e-08 Score=99.46 Aligned_cols=192 Identities=10% Similarity=0.123 Sum_probs=115.7
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccc-----cCCcc-ccc-ccCCCCcccccccccc-c--ccCcc------ccch
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGV-----SGISE-IET-FDCTSFPTKIAAEIKS-F--STDGW------VAPK 227 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~-----s~i~~-~~~-~~~~~~~~~~~g~i~~-f--d~~~f------i~~~ 227 (454)
.+..|.|+|..+|.- ...+++++.+.+-- ..... +.+ |+..+...+.....++ + ++.++ +..+
T Consensus 15 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 94 (391)
T PLN03173 15 GPATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDAR 94 (391)
T ss_pred CCeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHH
Confidence 447799999999998 45555555554322 11111 111 2333333332211100 0 01111 1222
Q ss_pred hhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccch
Q 012867 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (454)
Q Consensus 228 ~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 307 (454)
......-...|+.+|+.+||+++|+++++ ++ -|++.++.+ + .+ ...+
T Consensus 95 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~d---Id----~li~~t~t~-~--------------------~~-----P~~a 141 (391)
T PLN03173 95 QDMVVVEVPKLGKEAAAKAIKEWGQPKSK---IT----HLVFCTTSG-V--------------------DM-----PGAD 141 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHH---CC----EEEEEccCC-C--------------------cc-----cHHH
Confidence 23333445579999999999999999862 22 455665532 1 01 2357
Q ss_pred hHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCC
Q 012867 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (454)
Q Consensus 308 ~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~r 384 (454)
.+|...+|++.- .+.+..+|++++.+|..|.++|+.|....+||.++|.+. .. + .. ++. +
T Consensus 142 ~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S-~~-~--------~~-----~~d--~ 204 (391)
T PLN03173 142 YQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITA-VT-F--------RG-----PSD--T 204 (391)
T ss_pred HHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhh-hh-h--------CC-----ccc--c
Confidence 789999999863 457799999999999999999999999999999999722 10 0 00 110 0
Q ss_pred CccCCCCceeeecCceeeehHH
Q 012867 385 PWDINRDGFVMGEGAGVLLLEE 406 (454)
Q Consensus 385 pFd~~adG~v~GEGaaalvLe~ 406 (454)
..+.--.-.++|||||++||+.
T Consensus 205 ~~~~~v~~~LFGDGAaAvvl~~ 226 (391)
T PLN03173 205 HLDSLVGQALFGDGAAAIIIGS 226 (391)
T ss_pred chhhhhhhhhhcCceEEEEEeC
Confidence 0011123467899999999986
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-07 Score=100.40 Aligned_cols=123 Identities=18% Similarity=0.131 Sum_probs=88.5
Q ss_pred hHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh
Q 012867 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (454)
Q Consensus 233 dp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~ 312 (454)
.....++..|+.+||+++|++++ +|+++|-++.. ......++.+|..
T Consensus 174 ~Ea~~~~~~Aa~~aL~kaGi~p~--------DIDiLIv~~S~-------------------------~~~~PSlaa~I~n 220 (511)
T PLN02192 174 KEAETVMFGAIDQLLAKTSVKPK--------DIGILIVNCSL-------------------------FNPTPSLSAMVIN 220 (511)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH--------HCCEEEEECCC-------------------------CCCCchHHHHHHH
Confidence 44667899999999999999986 33455543321 1122345788999
Q ss_pred hccCcC--CCccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCC
Q 012867 313 DLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (454)
Q Consensus 313 ~~gl~G--ps~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ 389 (454)
.+|++. .++.++ .+|++++.||+.|.++|+.|....+||.++|.+. ...+.+-.+...++
T Consensus 221 ~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S-~n~y~g~drs~lv~---------------- 283 (511)
T PLN02192 221 HYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENIT-LNWYFGNDRSMLVS---------------- 283 (511)
T ss_pred HhCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEecc-ccCCCCCCHHHHhc----------------
Confidence 999984 688998 6999999999999999999999999999999833 22211111111110
Q ss_pred CCceeeecCceeeehHHh
Q 012867 390 RDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 390 adG~v~GEGaaalvLe~l 407 (454)
-.++|+|+|++||++.
T Consensus 284 --n~LFgDGAaAvLLs~~ 299 (511)
T PLN02192 284 --NCLFRMGGAAILLSNK 299 (511)
T ss_pred --cccccccceEEEEecc
Confidence 1357999999999863
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-08 Score=101.29 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +|++|+....+. . ......++..+|
T Consensus 28 ~~L~~ea~~~AL~dagl~~~---dID----~v~vg~~~~~~~---------------------~----~~~~~~~a~~lG 75 (398)
T PRK06157 28 EDLMVEAFLEALADAGIEPK---DID----AAWFGTHYDEIG---------------------S----GKSGTPLSRALR 75 (398)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccccc---------------------c----cchhHHHHHHcC
Confidence 35889999999999999987 444 788886531110 0 001134677899
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+.+ |.++|+++|+|++.||++|+++|++|++|++||+|+|.+
T Consensus 76 l~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~ 118 (398)
T PRK06157 76 LPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKL 118 (398)
T ss_pred CCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeec
Confidence 976 788999999999999999999999999999999999975
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-08 Score=102.63 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=70.0
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHh----
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA---- 311 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is---- 311 (454)
..|+.+++++||+|+|+++++ ..++ +||+|+..+... .. ...++..+.
T Consensus 49 ~eL~~~a~~~al~~agl~~~d-~~ID----~vi~G~~~~~~~---------------------~~--~~~~a~~~~~~~g 100 (438)
T PTZ00455 49 EELLATAIQGTLENTGLDGKA-ALVD----KVVVGNFLGELF---------------------SS--QGHLGPAAVGSLG 100 (438)
T ss_pred HHHHHHHHHHHHHHcCCCHHH-CCcC----EEEEEecccccc---------------------cc--ccchHHHHHHhcc
Confidence 458889999999999999863 0044 688886532110 00 001122222
Q ss_pred ---hhccCcC-CCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 312 ---MDLGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 312 ---~~~gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
..+|+.+ |.++|+++|+||+.||+.|+++|++|++|++||+|+|.+..
T Consensus 101 l~~~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~ 152 (438)
T PTZ00455 101 QSGASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTT 152 (438)
T ss_pred CcccccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccc
Confidence 4567754 99999999999999999999999999999999999997543
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-08 Score=102.51 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=72.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ .++ .||+|+..+.. ....++..++...|
T Consensus 32 ~~L~~~a~~~al~~agl~~~---~Id----~vi~G~~~~~~-------------------------~~~~~ar~~~l~aG 79 (430)
T TIGR02446 32 VDLGKMVVSELLARSEIDPK---LIE----QLVFGQVVQMP-------------------------EAPNIAREIVLGTG 79 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCcC-------------------------ccchHHHHHHHhCC
Confidence 45888999999999999987 333 58888653100 01224555666678
Q ss_pred Cc-C-CCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WM-G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~-G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+. + |.++|+++|+||+.|++.|+++|++|++|++||||+|.+.
T Consensus 80 l~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS 124 (430)
T TIGR02446 80 MNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSS 124 (430)
T ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEccc
Confidence 86 4 8999999999999999999999999999999999999874
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-08 Score=94.64 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=71.7
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
.++|.-.+.+.|||.+++++.+ .+ -||+|.- +.......++.+.+.--
T Consensus 30 A~~Lgsvaikaalera~v~~~~---v~----eVi~GnV-------------------------l~AnlGQapaRQaalgA 77 (396)
T KOG1390|consen 30 ATELGSVAIKAALERAVVPPSD---VA----EVIFGNV-------------------------LSANLGQAPARQAALGA 77 (396)
T ss_pred hhhHHHHHHHHHHHhcCCCHHH---hh----hhhhccc-------------------------cccccCcchHHHHHhhc
Confidence 4567778899999999988752 22 3666653 12222333456666655
Q ss_pred cC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeee
Q 012867 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (454)
Q Consensus 315 gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~ 361 (454)
|| .=|+.||+--|+|++.||.+|.|.|+.|..|++++||.|.|....
T Consensus 78 Glp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP 126 (396)
T KOG1390|consen 78 GLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVP 126 (396)
T ss_pred CCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCc
Confidence 65 458899999999999999999999999999999999999986543
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-08 Score=101.04 Aligned_cols=91 Identities=25% Similarity=0.409 Sum_probs=73.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ +++ +||+|+..... . ....+..++..+|
T Consensus 28 ~~L~~~A~~~Al~dAgl~~~---dID----~vi~g~~~~~~------------------------~-~~~~a~~v~~~lG 75 (426)
T PRK08170 28 SDLAVAAGRALLNRQPFAPD---DLD----EVILGCAMPSP------------------------D-EANIARVVALRLG 75 (426)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC------------------------C-cChHHHHHHHHhC
Confidence 45888999999999999987 344 78888653100 0 0123556888999
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+. -|.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.
T Consensus 76 l~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms 120 (426)
T PRK08170 76 CGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMS 120 (426)
T ss_pred cCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccc
Confidence 95 39999999999999999999999999999999999999643
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-07 Score=98.37 Aligned_cols=120 Identities=12% Similarity=0.141 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHH
Q 012867 231 RMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (454)
Q Consensus 231 ~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~i 310 (454)
.......++..|+.+||+++|++++ +|+++|-++.+. ......+.+|
T Consensus 168 ~~~ea~~l~~~A~~~aL~kaGi~p~--------dID~LVv~cS~~-------------------------~~~PSlaa~V 214 (502)
T PLN02377 168 AREEAEQVMFGALDNLFANTNVNPK--------DIGILVVNCSLF-------------------------NPTPSLSAMI 214 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHH--------HCCEEEEECCCC-------------------------CCCCcHHHHH
Confidence 3445667999999999999999986 234444444221 1223458899
Q ss_pred hhhccCcC--CCccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCcc
Q 012867 311 AMDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (454)
Q Consensus 311 s~~~gl~G--ps~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd 387 (454)
...+|++. .++.++ .+|++++.+|+.|.++|+.|....|||.++|.+ +.... ++
T Consensus 215 ~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~-S~~~~----------------------~~ 271 (502)
T PLN02377 215 VNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENI-TQNWY----------------------FG 271 (502)
T ss_pred HHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEecc-ccccC----------------------CC
Confidence 99999985 688899 599999999999999999999999999999972 22111 11
Q ss_pred CCCC----ceeeecCceeeehHH
Q 012867 388 INRD----GFVMGEGAGVLLLEE 406 (454)
Q Consensus 388 ~~ad----G~v~GEGaaalvLe~ 406 (454)
+++. ..++|+|||++||++
T Consensus 272 d~~s~lv~n~LFgDGAaAvlLs~ 294 (502)
T PLN02377 272 NKKSMLIPNCLFRVGGSAVLLSN 294 (502)
T ss_pred CCccccccceeeccccEEEEEec
Confidence 1222 367899999999986
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.6e-08 Score=99.85 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=69.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh--
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD-- 313 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~-- 313 (454)
..|+.++++++|+|+|++++ .++ .|++|+..+... ...++..++..
T Consensus 32 ~eL~~~a~~~al~~agl~~~---~Id----~vv~G~~~~~~~-------------------------~~~~~r~~~l~~g 79 (427)
T PRK09268 32 QDMLTAALDGLVDRFGLQGE---RLG----EVVAGAVLKHSR-------------------------DFNLTRECVLGSA 79 (427)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccCCc-------------------------cccHHHHHHHHcC
Confidence 35788999999999999886 344 688887532100 01123333333
Q ss_pred ccCcCCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 314 ~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
++...|.++|+++|+||+.||..|+++|++|.+|++||||+|.+.
T Consensus 80 l~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms 124 (427)
T PRK09268 80 LSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTS 124 (427)
T ss_pred CCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccC
Confidence 455689999999999999999999999999999999999999764
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-07 Score=98.31 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=68.1
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.++..++|+++|++++ .++ .|++|+..... .....++..+...-|
T Consensus 27 ~~L~~~a~~~al~~a~l~~~---~Id----~vi~G~~~~~~------------------------~~~~~~ar~~~l~~g 75 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPA---LIE----DVIMGCVSQVG------------------------EQATNVARNAVLASK 75 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccc------------------------cccccHHHHHHHHcC
Confidence 45888999999999999987 344 68888753100 000011222222224
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
| .-|.++|+.+|+||+.||..|++.|++|++|++||||+|.+.
T Consensus 76 l~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS 120 (390)
T PRK06504 76 LPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMT 120 (390)
T ss_pred CCCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecC
Confidence 4 459999999999999999999999999999999999999874
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-07 Score=92.86 Aligned_cols=120 Identities=23% Similarity=0.208 Sum_probs=85.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+.+||++||++++ +++ .+|+|... + ....+..++..+|
T Consensus 57 seLa~eAa~~ALekAGI~~~---DID----~lI~Gdll--------------------------~--Q~~sAs~vA~~LG 101 (337)
T PRK08304 57 RKMMEDAIQQALQKANLKKS---DID----YLLAGDLL--------------------------N--QIISANFAARELG 101 (337)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCC--------------------------C--CcchHHHHHHHhC
Confidence 46899999999999999986 333 56666421 0 0123567778887
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceee
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~ 395 (454)
+ |.+.|.++|+|+..||..|..+|++|.+|.+||++.+.+.+.+.-..| ...-|.-||. .-...
T Consensus 102 I--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerqfr~----------P~eyg~qrp~----taqwt 165 (337)
T PRK08304 102 I--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQFRF----------PTEYGGQRPP----TAQWT 165 (337)
T ss_pred C--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhhccC----------chhccccCCC----cceEE
Confidence 6 999999999999999999999999999999999999874332111000 0012333443 23457
Q ss_pred ecCceeeehHH
Q 012867 396 GEGAGVLLLEE 406 (454)
Q Consensus 396 GEGaaalvLe~ 406 (454)
+.|+|++||.+
T Consensus 166 vtGAGA~i~~~ 176 (337)
T PRK08304 166 VTGAGAVLLSR 176 (337)
T ss_pred eeccEEEEEec
Confidence 88999999985
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-07 Score=97.66 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=61.8
Q ss_pred HHHHHHhcchhhhcCC-ccH-HHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 236 MLYLLTAGKKALADGG-ITE-DVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 236 ~rl~l~aa~eALedAG-~~~-~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
..|+.+++++||+||| +++ + +++ ++++++. ..+ +.. ......++..
T Consensus 26 ~eL~~eA~~~Al~DAG~l~~~~---dId----~~~~~~~-~~~-----------------~~~-------~~~~~~~~~~ 73 (385)
T PRK06066 26 REMMFEAASRAYKDAGNINPRR---DVD----SFISCQE-DFW-----------------EGI-------AIADEFAPDQ 73 (385)
T ss_pred HHHHHHHHHHHHHhcCCCCChh---cCC----EEEEecC-ccc-----------------Ccc-------cccchhHHHH
Confidence 4589999999999999 975 4 333 5666532 100 000 0111235567
Q ss_pred ccCc-CCCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 314 LGWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 314 ~gl~-Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+|+. .|.+.| |+|+..+++.|+++|++|.||.+||.|++.+
T Consensus 74 lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~ 115 (385)
T PRK06066 74 IGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKP 115 (385)
T ss_pred cccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeec
Confidence 8884 476666 8999999999999999999999999998853
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-07 Score=97.62 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhH
Q 012867 230 KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309 (454)
Q Consensus 230 ~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~ 309 (454)
...+....++.+|+.+||+++|+++++ ++ -|++.++.+ ......+.+
T Consensus 143 ~~~~ea~~la~~Aa~~aL~~agi~p~d---Id----~lIv~tst~--------------------------~~~Pslaa~ 189 (478)
T PLN02932 143 VSRKETEEVIIGAVDNLFRNTGISPSD---IG----ILVVNSSTF--------------------------NPTPSLSSI 189 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHH---CC----EEEEEccCC--------------------------CCCCcHHHH
Confidence 344456679999999999999999862 22 344555421 122345889
Q ss_pred HhhhccCcC--CCccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCc
Q 012867 310 LAMDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386 (454)
Q Consensus 310 is~~~gl~G--ps~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpF 386 (454)
|...+|++. .++.++ .||++++.+|..|.++|+.|....+||.++|. ++.....+-.+ .+
T Consensus 190 V~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~-~S~~~~~~d~r-~~--------------- 252 (478)
T PLN02932 190 LVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTEN-ITQNLYLGNNK-SM--------------- 252 (478)
T ss_pred HHHHhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEee-cccccCCCcch-hh---------------
Confidence 999999973 688898 89999999999999999999999999999998 33322211000 00
Q ss_pred cCCCCceeeecCceeeehHHh
Q 012867 387 DINRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 387 d~~adG~v~GEGaaalvLe~l 407 (454)
--.-.++|+|+|++||+..
T Consensus 253 --l~t~~LFgDGAAAvlLs~~ 271 (478)
T PLN02932 253 --LVTNCLFRIGGAAILLSNR 271 (478)
T ss_pred --hccceeecccceEEEEecc
Confidence 0134678999999999964
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-07 Score=96.75 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=113.4
Q ss_pred cceEEEecccccccCC---CCchhHHhhhhccccCCccc-ccccCCCC-cccccccccccccCcc-ccc--hhhhhhhHH
Q 012867 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEI-ETFDCTSF-PTKIAAEIKSFSTDGW-VAP--KLSKRMDKF 235 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g---~~~~~~w~~L~~G~s~i~~~-~~~~~~~~-~~~~~g~i~~fd~~~f-i~~--~~a~~mdp~ 235 (454)
.++|+.+-++|.-|.- .+.+.|-+....-. .+.+- -+|-..-+ .+.+ |+-.-+.+..+ ++| .........
T Consensus 111 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~sg~-g~~ty~P~~~~~~~~~~~~~~~r~ea 188 (521)
T PLN02854 111 SKPVYLVDFACYKPEDERKISVDSFLTMTEENG-SFEDETVQFQRRISTRSGL-GDETYLPRGITSRPPNLCMEEARAEA 188 (521)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCC-CCccccCccccCCCCcchHHHHHHHH
Confidence 4679999999998876 35566655544321 11100 00000000 0000 00000111111 233 223334456
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
...+..++.++|+++|++++ .|+++|-++.+. ......+.+|...+|
T Consensus 189 ~~v~~~~~~~lL~kaGi~p~--------dID~LIv~cS~~-------------------------~p~PSlAa~I~n~LG 235 (521)
T PLN02854 189 EAVMFGALDSLFSKTGVKPR--------DIGILIVNCSLF-------------------------NPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHcCCCHH--------HCCEEEEECCCC-------------------------CCCCCHHHHHHHHhC
Confidence 67788899999999999986 334555444211 122345889999999
Q ss_pred CcC--CCccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC-
Q 012867 316 WMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD- 391 (454)
Q Consensus 316 l~G--ps~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad- 391 (454)
+++ .++.++ .+|++++.+|..|.++|+.|....+||.++|.+. ...+.+ ++...
T Consensus 236 lr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S-~~~y~g---------------------~Drs~l 293 (521)
T PLN02854 236 LRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT-LNWYFG---------------------NDRSML 293 (521)
T ss_pred CCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee-cCCCCC---------------------Cchhhh
Confidence 984 477887 7999999999999999999999999999999842 221110 11112
Q ss_pred --ceeeecCceeeehHHh
Q 012867 392 --GFVMGEGAGVLLLEEL 407 (454)
Q Consensus 392 --G~v~GEGaaalvLe~l 407 (454)
-.++|+|+|++||++.
T Consensus 294 v~~~LFgDGAAAvlLs~~ 311 (521)
T PLN02854 294 LCNCIFRMGGAAVLLSNK 311 (521)
T ss_pred cceeeeccceeEEEEecc
Confidence 4578999999999863
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-07 Score=94.63 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|+|++++ .++ +|++|+... .. .. ...++..+....|
T Consensus 27 ~~L~~~a~~~al~dagl~~~---~ID----~vv~g~~~~-~~----------------------~~-~~~~~~~~~l~~g 75 (382)
T PRK07801 27 ADLGAHVLKGLVDRTGIDPA---AVD----DVIFGCVDT-IG----------------------PQ-AGNIARTSWLAAG 75 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEEeecc-CC----------------------cc-cccHHHHHHHHcC
Confidence 35889999999999999987 344 788885310 00 00 0001122222333
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+ ..|.++|+++|+|++.||+.|+++|++|++|++||+|+|.+
T Consensus 76 l~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~m 119 (382)
T PRK07801 76 LPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNM 119 (382)
T ss_pred CCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhh
Confidence 3 46889999999999999999999999999999999999965
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.3e-07 Score=95.94 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=70.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++.+||+|+|++++ +++ +|++|..... ..+ .+.....++..+|
T Consensus 38 ~eL~~eA~~~Al~dagl~~~---dID----~vv~~~~~~~----------------------~~g--~~~~~~~~~~~lG 86 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLA---DID----GSVASYFSDH----------------------FQR--QLLAGIMVQDYLG 86 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEeccccc----------------------ccc--cchhhHHHHHhcC
Confidence 36889999999999999886 344 5666542110 000 1112234678899
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+.+ |+++|+++|+|+..||+.|++.|++|++|++||+|+|.+.
T Consensus 87 l~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s 130 (430)
T PRK06365 87 LVPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMS 130 (430)
T ss_pred CCCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecc
Confidence 976 8899999999999999999999999999999999999754
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-07 Score=93.61 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=63.7
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+++||+|||++++ +++ +++++.. . . . ....++..+|
T Consensus 25 ~~L~~eA~~~Al~DAgl~~~---dID----~~~~~~~-~-~---------------------~-------~~~~l~~~lG 67 (386)
T PRK07855 25 LRLACEAVLAALDDAGLAPS---DVD----GLVTFTM-D-T---------------------N-------PEIAVARALG 67 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEecC-c-c---------------------c-------cHHHHHHHCC
Confidence 35889999999999999876 344 5555321 0 0 0 0124788899
Q ss_pred CcC--CCcceeccccccceeeeccccceeccccceEeecCC
Q 012867 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354 (454)
Q Consensus 316 l~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGv 354 (454)
+++ |...|.++|+|+..+|..|+++|++|.||++||.|+
T Consensus 68 l~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~ 108 (386)
T PRK07855 68 IGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRA 108 (386)
T ss_pred CCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEee
Confidence 987 345789999999999999999999999999999887
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-07 Score=94.10 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=71.5
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchh-HHhhh
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA-MLAMD 313 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~-~is~~ 313 (454)
...++.+++++||+++|++++ .++ .|++|+..+++. + . .++. .+...
T Consensus 23 ~~el~~~a~~~Al~~agl~p~---dID----~vi~g~~~~~~~----------------------g--~-~~~~~~~~~~ 70 (393)
T cd00826 23 AHEAGAKAIAAALEPAGVAAG---AVE----EACLGQVLGAGE----------------------G--Q-NCAQQAAMHA 70 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEccCCcc----------------------c--C-cHHHHHHHHc
Confidence 356788899999999999987 333 688887643221 0 0 1111 25566
Q ss_pred ccCcC-CCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 314 LGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 314 ~gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+|+.+ |.++|+++|+|++.||+.|+++|++|++|++||+|+|.+.
T Consensus 71 lg~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s 116 (393)
T cd00826 71 GGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME 116 (393)
T ss_pred CCCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccc
Confidence 77766 9999999999999999999999999999999999999864
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-06 Score=90.35 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=71.7
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
.|+..+.+++|+++|++++ .++ -|++|..... +.....++..++..-||
T Consensus 31 ~L~~~~~~~~l~r~~i~~~---~id----~vi~G~~~~~------------------------g~~g~n~aR~~al~agl 79 (417)
T PRK06025 31 HLAATVLKALAERNGLNTA---DVD----DIIWSTSSQR------------------------GKQGGDLGRMAALDAGY 79 (417)
T ss_pred HHHHHHHHHHHHhcCCCHH---HCC----EEEEEcCCCc------------------------CcccCcHHHHHHHhCCC
Confidence 3566688899999999886 333 5888876311 11112346666777777
Q ss_pred --cCCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 317 --MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 317 --~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
+=|.+||+..|+||+.||.+|++.|+.|++|++|+||+|.+..
T Consensus 80 p~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~ 124 (417)
T PRK06025 80 DIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSY 124 (417)
T ss_pred CCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCC
Confidence 4599999999999999999999999999999999999999763
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-06 Score=82.60 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=121.2
Q ss_pred cceEEEecccccccCC---CCchhHHhhhhccccCCccc-ccccCCCC-cccccccccccccCcc--ccch--hhhhhhH
Q 012867 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEI-ETFDCTSF-PTKIAAEIKSFSTDGW--VAPK--LSKRMDK 234 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g---~~~~~~w~~L~~G~s~i~~~-~~~~~~~~-~~~~~g~i~~fd~~~f--i~~~--~a~~mdp 234 (454)
.++|+++-+.|.-|.- .+.+.|++..+.-.. +.+- -+|...-+ .+.++ + +.|-|+.+ ++|. .....+.
T Consensus 6 ~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~-f~~~sl~F~~kIlerSGlG-~-eTy~P~~~~~~p~~~s~~~a~~E 82 (290)
T PF08392_consen 6 PRPVYLVDFACYKPPDELRVSREEFIEHARRCGR-FDEESLDFQRKILERSGLG-D-ETYLPPALHEIPPDPSLAAAREE 82 (290)
T ss_pred CCCEEEEeeeecCCCcccccCHHHHHHHHHhccc-CChhHHHHHHHHHHhcCCC-c-cccCCcccccCCCcccHHHHHHH
Confidence 4589999999999887 567777776654321 1110 00100000 00000 0 00111111 2222 1233345
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...++..++.++|+.+|+.|+ .|+++|-++. .+.....++.+|...|
T Consensus 83 ae~v~f~av~~LL~ktgv~p~--------dIdiLVvncs-------------------------~f~ptPSLsamIvnr~ 129 (290)
T PF08392_consen 83 AEMVIFGAVDDLLAKTGVKPS--------DIDILVVNCS-------------------------LFNPTPSLSAMIVNRY 129 (290)
T ss_pred HHHHHHHHHHHHHHHcCCCHH--------HCCEEEEECc-------------------------CCCcCCcHHHHHHHHh
Confidence 666888999999999999985 4455554442 1122335688899999
Q ss_pred cCcCCC--ccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC
Q 012867 315 GWMGPN--YSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (454)
Q Consensus 315 gl~Gps--~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad 391 (454)
|++.-. +.+. -|||+|+.+|.+|.++|+...-..|||..+|. +++..+.+-.+..+++
T Consensus 130 ~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~-~s~~~Y~G~~rsmlv~------------------ 190 (290)
T PF08392_consen 130 GMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTEN-ISANWYRGNDRSMLVS------------------ 190 (290)
T ss_pred CCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEee-cccccccCCcHHHhhc------------------
Confidence 998754 3333 48999999999999999999989999999998 6666666665555554
Q ss_pred ceeeecCceeeehHHhHH
Q 012867 392 GFVMGEGAGVLLLEELEH 409 (454)
Q Consensus 392 G~v~GEGaaalvLe~l~~ 409 (454)
..+++.|+++++|.+...
T Consensus 191 NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 191 NCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred cccccCCceeEEeecCcc
Confidence 345789999999987544
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-06 Score=87.11 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=82.0
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
.-|+.+|+.+||+++ +++ +++ .|++|+..+.+ .....+..|...||
T Consensus 50 ~~la~~Aa~~aL~~a--~~~---~Id----~li~~t~s~~~-------------------------~~~s~a~~v~~~Lg 95 (379)
T TIGR01835 50 VTMAASAAKPILDRN--DKQ---KID----MVIFGTESGID-------------------------QSKAAAVYVHGLLG 95 (379)
T ss_pred HHHHHHHHHHHHHhC--CHh---hCC----EEEEEeCCCCC-------------------------CCCCHHHHHHHHhC
Confidence 468999999999998 443 222 46677764321 11125788999999
Q ss_pred CcC--CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 316 l~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
+.+ +.+.+..+|++++.||+.|.++|+.|..+.+||.++|.... . + ....-.
T Consensus 96 l~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~a~~-------------~-----~--------~~~~~~ 149 (379)
T TIGR01835 96 LQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDIAKY-------------G-----L--------ESPGEP 149 (379)
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeehhhc-------------c-----c--------CCCCCc
Confidence 975 67889999999999999999999999999999999986100 0 0 011124
Q ss_pred eeecCceeeehHH
Q 012867 394 VMGEGAGVLLLEE 406 (454)
Q Consensus 394 v~GEGaaalvLe~ 406 (454)
..|+|++++||++
T Consensus 150 ~~GdGA~A~Ll~~ 162 (379)
T TIGR01835 150 TQGAGAVAMLVSA 162 (379)
T ss_pred cccCccEEEEEec
Confidence 5899999999985
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=83.40 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=80.8
Q ss_pred HHHHH-HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 236 MLYLL-TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 236 ~rl~l-~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..+.+ .|+.+||+++|++++ +|.++|-++.+. ......+.++...+
T Consensus 134 ~em~i~~A~~~aL~~aGi~p~--------dID~LIvs~T~~-------------------------~~~Pslaa~l~~~L 180 (466)
T PLN00415 134 SELVIFGALNSLFKKTGIEPR--------EVGIFIVNCSLF-------------------------NPNPSLSSMIVNRY 180 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCHH--------HCCEEEEECcCC-------------------------CCCchHHHHHHHHh
Confidence 34444 477788999999986 234444333211 11223477888999
Q ss_pred cCcC--CCcceec-cccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC
Q 012867 315 GWMG--PNYSIST-ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (454)
Q Consensus 315 gl~G--ps~tv~t-ACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad 391 (454)
|++. ..+.|.. +|++++.+|..|.+.++.+....+||.++|. ++...+.+-.+...+ .
T Consensus 181 GLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~-~S~~~~~~~dr~~lv------------------~ 241 (466)
T PLN00415 181 KLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTEN-MTLSMYRGNDRSMLV------------------P 241 (466)
T ss_pred CCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEec-ccccccCCCcHhHhc------------------c
Confidence 9972 4577887 9999999999999999999999999999997 222211111110011 1
Q ss_pred ceeeecCceeeehHHh
Q 012867 392 GFVMGEGAGVLLLEEL 407 (454)
Q Consensus 392 G~v~GEGaaalvLe~l 407 (454)
..++|+|++++||+..
T Consensus 242 n~LFgDGAAAvlLs~~ 257 (466)
T PLN00415 242 NCLFRVGGAAVMLSNR 257 (466)
T ss_pred ceeecccceEEEEecC
Confidence 2568999999999863
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.8e-06 Score=80.63 Aligned_cols=120 Identities=21% Similarity=0.200 Sum_probs=82.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+.+||+++|++++ +++ -+|+|...+ ..+.++.++..+|
T Consensus 55 ~~L~~EA~~~AL~kAGI~~~---DID----~i~vGdL~n----------------------------Q~ipssfvar~LG 99 (334)
T PRK12404 55 RKLLEEACSRAIEKAKLRKE---DIQ----FFLAGDLMN----------------------------QITPTSFAARTLG 99 (334)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCC----------------------------CcCcHHHHHHHhC
Confidence 46899999999999999986 333 566666421 1123456777777
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceee
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~ 395 (454)
+ |.+-|.+|||++..||..|..+|+.|.+|.+||+-..-..+.+.-..| - ..-|.-||..+. =.
T Consensus 100 I--P~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~-----P-----~eyG~Qrp~taq--wT-- 163 (334)
T PRK12404 100 I--PYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRY-----P-----TEYGGQKPPTAQ--WT-- 163 (334)
T ss_pred C--CccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccC-----c-----ccccCcCCCccc--EE--
Confidence 4 779999999999999999999999999999999876643222211111 0 123455665433 23
Q ss_pred ecCceeeehHH
Q 012867 396 GEGAGVLLLEE 406 (454)
Q Consensus 396 GEGaaalvLe~ 406 (454)
--|+|++||.+
T Consensus 164 vTgaga~~l~~ 174 (334)
T PRK12404 164 VTGAGAAILSK 174 (334)
T ss_pred EEceEEEEEec
Confidence 34677778865
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.1e-05 Score=82.29 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=93.6
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+++++||+|||++++ +++ +++.+.. +. +..... ....+...+|
T Consensus 25 ~el~~eA~~~Al~DAgl~~~---dID----~~~~~~~--~~---------------------~~~~~~--~~~~~~~~~G 72 (352)
T PRK07937 25 VEMLMPCFAELYAELGITKS---DIG----FWCSGSS--DY---------------------LAGRAF--SFISAIDSIG 72 (352)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEcc--cc---------------------cccccc--chhhHHhhcc
Confidence 45889999999999999987 344 4433221 00 000000 0112344566
Q ss_pred Cc-C-CCcceeccccccceeeeccccceeccccceEeecCCCceee------------eec--ccchh---hhhhhhc--
Q 012867 316 WM-G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI------------PIG--LGGFV---ACRALSQ-- 374 (454)
Q Consensus 316 l~-G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~------------p~~--~~~f~---~~~~Ls~-- 374 (454)
+. + |...+. ++|..||+.|+.+|++|.||.+||.|++.+.. +.. ..++. ...+..+
T Consensus 73 ~~~~~~~~~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~~y 149 (352)
T PRK07937 73 AVPPINESHVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQARAG 149 (352)
T ss_pred CCCCCceEEec---CcHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHHHH
Confidence 63 2 333344 46888999999999999999999999885321 000 00000 0000000
Q ss_pred -------------------cc--CCCCCCCCCccCC--------------CCceeeecCceeeehHHhHHHhhccceeee
Q 012867 375 -------------------RN--NDPTKASRPWDIN--------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYA 419 (454)
Q Consensus 375 -------------------~~--~~p~~~~rpFd~~--------------adG~v~GEGaaalvLe~l~~A~~~G~~i~a 419 (454)
+| .+|.-..| ++.+ -|=-.++||++++||.+.+.|++.+.++ .
T Consensus 150 m~~yG~t~e~lA~vavk~r~nA~~NP~A~~r-it~edvl~s~~ia~PL~l~d~~~~~DGAaA~vl~s~~~A~~l~~~p-v 227 (352)
T PRK07937 150 LDAGKWTEEQMAEVAARSRADARRNPSAEPS-ISVDELLARPYFADPLRRHDIAPITDGAAAVVLAAGDRARELRERP-A 227 (352)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhCchhhcc-CCHHHHhcCCcccCCchhhcCCCCCCcceEEEEecHHHHHHcCCCc-E
Confidence 00 12222222 1100 0111368999999999999999888766 8
Q ss_pred eecCcceecccccc
Q 012867 420 EFRGGSFTSDAYHM 433 (454)
Q Consensus 420 ~I~G~a~~~Dg~~~ 433 (454)
.|+|++..+|...+
T Consensus 228 ~I~g~~~~~~~~~~ 241 (352)
T PRK07937 228 WITGIEHRIESPSL 241 (352)
T ss_pred EEEEEEEeeCCccc
Confidence 89999988776543
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.9e-06 Score=85.59 Aligned_cols=57 Identities=30% Similarity=0.392 Sum_probs=51.3
Q ss_pred cchhHHhhhccCcC--CCcceeccccccceeeeccccceeccccceEeecCCCceeeee
Q 012867 305 MGSAMLAMDLGWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (454)
Q Consensus 305 ~~a~~is~~~gl~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~ 361 (454)
.++..++...|+.+ |.++|+.+|+||+.||+.|+++|++|++|++|+||+|.+....
T Consensus 68 ~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~ 126 (392)
T COG0183 68 NIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAP 126 (392)
T ss_pred cHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCC
Confidence 35677888999986 9999999999999999999999999999999999999875544
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.7e-05 Score=75.90 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=64.1
Q ss_pred HHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC--
Q 012867 239 LLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW-- 316 (454)
Q Consensus 239 ~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl-- 316 (454)
+..+....+|+-+++|..+. -|++|+...... .++-+...+++-|+
T Consensus 65 l~~vl~a~ie~t~~dp~~ig-------di~vG~vL~pg~-------------------------ga~e~R~a~~~ag~P~ 112 (435)
T KOG1389|consen 65 LAAVLRAVIEKTNLDPSLIG-------DIVVGTVLAPGS-------------------------GASECRMAAFYAGFPE 112 (435)
T ss_pred HHHHHHHHHhhcCCCHHHhc-------ceeeeeccCCCc-------------------------chHHHHHHHHHcCCCc
Confidence 33445556788899886332 477777532211 11112223344455
Q ss_pred cCCCcceeccccccceeeeccccceeccccceEeecCCCceeee
Q 012867 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360 (454)
Q Consensus 317 ~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p 360 (454)
+-|..+|+.-|+|+|.|+..-...|+.|.+|+-|.+|+|+|.+.
T Consensus 113 tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~ 156 (435)
T KOG1389|consen 113 TVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTN 156 (435)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhccc
Confidence 45889999999999999999999999999999999999998765
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.66 E-value=1.8e-05 Score=83.11 Aligned_cols=139 Identities=18% Similarity=0.140 Sum_probs=89.3
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
..|-|.|+|.-+|.- .+.+++-+.+ |.+ +.|-..+...+... +..+.| ...-|+++|+
T Consensus 3 ~~vgI~gig~Y~P~~~v~n~eLa~~~--g~~-----~~~~~~GI~~r~~a---------va~~~E-----d~~tmA~~AA 61 (459)
T PLN02577 3 KNVGILAMEVYFPPTCVQQEALEAHD--GVS-----KGKYTIGLGQDCMA---------FCTDVE-----DVISMSLTVV 61 (459)
T ss_pred CccEEEEEEEeCCCeEEcHHHHHHHh--CCC-----HHHHhhccceeEec---------cCCCCC-----CHHHHHHHHH
Confidence 368999999999988 6666665442 111 01100010000000 001111 2346899999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHh---hhccCcC-C
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA---MDLGWMG-P 319 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is---~~~gl~G-p 319 (454)
++||+++|++++ +++ -|++||..+... ....+..|. ..+|.+. +
T Consensus 62 ~~aL~~agid~~---~Id----llivaTeT~~d~-------------------------~ps~A~~v~~ll~~LG~~~~~ 109 (459)
T PLN02577 62 KSLLEKYNIDPK---QIG----RLEVGSETVIDK-------------------------SKSIKTFLMQLFEESGNTDIE 109 (459)
T ss_pred HHHHHHcCCCHH---HCC----EEEEEcCCCCCC-------------------------CCchHHHHHHHHHHhCCCCcE
Confidence 999999999986 333 577887643221 112344554 3455543 6
Q ss_pred Ccceeccccccceeeeccccceecccc--ceEeecCCCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDA 356 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~--d~aLvGGvd~ 356 (454)
++-+..||+++..||..|.++|++|.. +.+||.|+|.
T Consensus 110 afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~ 148 (459)
T PLN02577 110 GVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADS 148 (459)
T ss_pred EeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEech
Confidence 788999999999999999999999975 9999999997
|
|
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=97.56 E-value=2e-06 Score=68.66 Aligned_cols=63 Identities=27% Similarity=0.392 Sum_probs=46.4
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
.|..+|++.+.||+.|..+|+.|.++.+|+.+.|.... + +. +......+++|||+++
T Consensus 2 Di~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~---~--------~~------------~~~~~~~~~~gDgAaA 58 (80)
T PF08545_consen 2 DINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSR---I--------VD------------RTDRQTAFIFGDGAAA 58 (80)
T ss_dssp EEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG---G--------SH------------TTHHHHHTTB-EEEEE
T ss_pred cccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccc---c--------cc------------ccccCcceeecchheE
Confidence 57899999999999999999999999999999987211 0 00 0012245579999999
Q ss_pred eehHHh
Q 012867 402 LLLEEL 407 (454)
Q Consensus 402 lvLe~l 407 (454)
+||++.
T Consensus 59 ~vl~~~ 64 (80)
T PF08545_consen 59 VVLSRD 64 (80)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999974
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=97.51 E-value=3.6e-05 Score=80.78 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=67.7
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..-|+++|+..+|+++|++++ +++ -|++|+..+.+. ....+..|...|
T Consensus 50 ~~tma~~AA~~lL~~a~id~~---~Id----~Liv~TeS~~d~-------------------------sps~a~~v~~lL 97 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDYN---QIG----RLEVGTETIIDK-------------------------SKSVKTVLMQLF 97 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCCCCC-------------------------CCchHHHHHHHH
Confidence 345899999999999999886 333 577777643321 112356666655
Q ss_pred cCcC----CCcceeccccccceeeeccccceecccc--ceEeecCCCc
Q 012867 315 GWMG----PNYSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDA 356 (454)
Q Consensus 315 gl~G----ps~tv~tACsSsl~AI~~A~~~I~~G~~--d~aLvGGvd~ 356 (454)
++-| .++.+..||+++..||..|..+|++|.. +.+||.+.|.
T Consensus 98 ~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDi 145 (454)
T TIGR01833 98 EESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDI 145 (454)
T ss_pred HhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecc
Confidence 4423 4677899999999999999999999974 8999999997
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=5.7e-05 Score=72.15 Aligned_cols=85 Identities=26% Similarity=0.430 Sum_probs=69.1
Q ss_pred HHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc
Q 012867 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (454)
Q Consensus 238 l~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~ 317 (454)
++-++...||+|+++.-+ .++..-+|-++|-+.- ..|.-|..|++
T Consensus 32 ~a~ea~tkal~da~ikys---~vqqa~vgyvfgdstc--------------------------------gqraiyevgmt 76 (408)
T KOG1406|consen 32 FAKEAITKALQDAGIKYS---EVQQAVVGYVFGDSTC--------------------------------GQRAIYEVGMT 76 (408)
T ss_pred HHHHHHHHHHHhcCCCHH---HHHhhhheeeecCCcc--------------------------------chHHHHhcccc
Confidence 445788899999999865 5565666766664421 23445678999
Q ss_pred C-CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 318 G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 318 G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
| |.+.|++.|+++..||.+|.|.|.+|..|.+|+-|.|-|
T Consensus 77 gipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm 117 (408)
T KOG1406|consen 77 GIPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKM 117 (408)
T ss_pred CcceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhh
Confidence 9 999999999999999999999999999999999999974
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=5.8e-05 Score=80.57 Aligned_cols=89 Identities=25% Similarity=0.247 Sum_probs=66.1
Q ss_pred HHHHHHhcchhhhcCCcc--HHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 236 MLYLLTAGKKALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~--~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
..|+.+|+++||+|||+. ++ .++ +++++..... ..+.....++..
T Consensus 28 ~~L~~eA~~~Al~DAGl~~~~~---dID----~v~v~~~~~~--------------------------~~~~~~~~la~~ 74 (498)
T PRK08257 28 VDLMAAAARAAAADAGADAVLE---AID----SVAVVNQLSW--------------------------RYRDPPGLLAER 74 (498)
T ss_pred HHHHHHHHHHHHHhcCCCcCHH---HCC----EEEEeccccc--------------------------cccCHHHHHHHH
Confidence 458899999999999998 66 344 6777643210 011224678888
Q ss_pred ccCcC-CCcceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 314 LGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 314 ~gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
+|+.. +.....+++.|+..+|+.|++.|.+|++|++||+|+|.+
T Consensus 75 lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~ 119 (498)
T PRK08257 75 LGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQ 119 (498)
T ss_pred cCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeec
Confidence 99954 344455677777799999999999999999999999974
|
|
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=96.87 E-value=6.6e-05 Score=71.52 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=89.6
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccc--cCCccc----cc-ccCCCCcccccc-------cccccccCcc--ccc
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGV--SGISEI----ET-FDCTSFPTKIAA-------EIKSFSTDGW--VAP 226 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~--s~i~~~----~~-~~~~~~~~~~~g-------~i~~fd~~~f--i~~ 226 (454)
..+.+|.|+|.-.|.- ..-+++++.+.+.. +...+. .+ |+..+...++.. +-+.|..... +..
T Consensus 12 ~g~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~ 91 (226)
T PF00195_consen 12 PGPAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAE 91 (226)
T ss_dssp SSSEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHH
T ss_pred CCCeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHH
Confidence 3558999999999987 46666766543221 111111 11 222222212111 1111110000 122
Q ss_pred hhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccc
Q 012867 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306 (454)
Q Consensus 227 ~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (454)
+......-...|+.+|+.+||+++|+++++ +. .|++-++.|-. ...+
T Consensus 92 R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~d---It----hlv~vs~TG~~--------------------------~Pgl 138 (226)
T PF00195_consen 92 RNALYAEEAPPLAEEAARKALAEAGLDPSD---IT----HLVTVSCTGIA--------------------------APGL 138 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-GGG---EC----EEEEEESSSSE--------------------------CS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcc---cc----eEEEEecCCcC--------------------------CCch
Confidence 233334445578999999999999998752 21 45555543321 1223
Q ss_pred hhHHhhhccCcCCC---cceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 307 SAMLAMDLGWMGPN---YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 307 a~~is~~~gl~Gps---~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
-.++...+||+.-. ....-||..|..+|..|.+..+...-..+||..+|++
T Consensus 139 D~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElc 192 (226)
T PF00195_consen 139 DARLINRLGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELC 192 (226)
T ss_dssp HHHHHHHHT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEG
T ss_pred hHHHHhcCCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEee
Confidence 45677888886532 3455699999999999999999888889999999973
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0034 Score=63.75 Aligned_cols=136 Identities=24% Similarity=0.335 Sum_probs=94.7
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
.-|+++|+.++|..+++++..+ . .|++|+..+.+.. =..+..|+..||
T Consensus 52 vTmaveAA~~~l~r~~~D~~~I---g----~v~vgTES~~d~~-------------------------K~~at~v~~~lg 99 (377)
T COG3425 52 VTMAVEAARNALKRADIDPSKI---G----AVIVGSESGPDAV-------------------------KPTATIVAEALG 99 (377)
T ss_pred HHHHHHHHHHHHhccCCCHHHC---c----eEEEecCCCcccc-------------------------cchHHHHHHHhC
Confidence 3489999999999999987522 2 6889987543321 113677888898
Q ss_pred CcCCC--cceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 316 WMGPN--YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 316 l~Gps--~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
+.--. +-+..||-++..||++|..+|.+|..+.+||.|.|....- |...+. +
T Consensus 100 ~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~------------------~~~~~E--------~ 153 (377)
T COG3425 100 LNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYA------------------PGDALE--------Y 153 (377)
T ss_pred CCCceehhhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccC------------------CCcccC--------c
Confidence 86533 4466799999999999999999999999999999972100 111111 2
Q ss_pred eeecCceeeehHHhHHHhhccceeeeeecCccee-ccccccCCC
Q 012867 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT-SDAYHMTEP 436 (454)
Q Consensus 394 v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~-~Dg~~~t~P 436 (454)
.-|.|++++|+.+ +..+.+++.+.+.. .|-..+..|
T Consensus 154 t~GAGavA~lIg~-------n~~~~a~~~~~~syt~d~~DFwRp 190 (377)
T COG3425 154 TAGAGAVAFLIGK-------NPPIVAEFEGTGSYTTDTPDFWRP 190 (377)
T ss_pred cCCCceEEEEEcc-------CCCeEEEecCceEEecCCCccccc
Confidence 3678999999984 24566777665544 455444333
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0058 Score=59.31 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=46.4
Q ss_pred chhHHhhhccC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 306 GSAMLAMDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 306 ~a~~is~~~gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
++...+..-|+ +-|..||.-+|-|+.+|+..++-+|..|.||++++||||.+.+
T Consensus 105 iareaal~agfsdktpahtvtmacissn~amttgmgliatg~~dvivaggvelmsd 160 (465)
T KOG1392|consen 105 IAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSD 160 (465)
T ss_pred HHHHHHHhcCCCCCCccceeeeehhccchhhhccceeEeeCCcCEEEEcceeeccc
Confidence 45555555566 5699999999999999999999999999999999999998654
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0035 Score=60.00 Aligned_cols=92 Identities=25% Similarity=0.433 Sum_probs=65.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
+.|...+++-||..+++.++ ..+ .|++|.-..... +.. .++.++....|
T Consensus 29 TdL~~~AakAAL~aa~v~~e---~VD----~VI~GNV~aSSs----------------DgI--------Yl~RHvGL~~G 77 (396)
T KOG1391|consen 29 TDLGVVAAKAALKAANVGAE---AVD----HVIMGNVLASSS----------------DGI--------YLARHVGLRVG 77 (396)
T ss_pred hhHHHHHHHHHHhhcCCChh---hcc----eEEEeeeeeccC----------------Cce--------EeeeccccccC
Confidence 45667788889999999886 444 567765421100 000 11233333333
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCcee
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l 358 (454)
+ .-|.++|+.-|-|+.++|-.++|.|.-|+.+++|+||+|.|.
T Consensus 78 vP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMS 122 (396)
T KOG1391|consen 78 VPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMS 122 (396)
T ss_pred CcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccc
Confidence 3 348999999999999999999999999999999999999864
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.0056 Score=68.12 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=43.7
Q ss_pred ccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+.++.|.++ +|||+++|++|+|+..+|+. + |.+.+|+| ||+..|+
T Consensus 565 ~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~-l----~~~~~~~~-pt~~~la 612 (705)
T PRK06060 565 SVDQDLAFSELGFDSQMTVTLCKRLAAVTGLR-L----PETVGWDY-GSISGLA 612 (705)
T ss_pred hCCCCCChhhcCchHHHHHHHHHHHHHHhCCC-C----CceeeecC-CCHHHHH
Confidence 35678899999 99999999999999999998 8 99999999 9999998
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.049 Score=53.71 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=66.1
Q ss_pred hhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHh
Q 012867 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (454)
Q Consensus 232 mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is 311 (454)
+.....+..++.++||+++++.++++ + .|+.-++.|- ....+=.+|.
T Consensus 73 ie~a~~l~v~a~r~aL~~~~l~pedI---d----~vv~vtsTG~--------------------------~~Ps~dari~ 119 (356)
T COG3424 73 IEEAVPLGVDALRRALDGSPLRPEDI---D----AVVTVTSTGL--------------------------ATPSLDARIV 119 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHC---c----EEEEEeeccc--------------------------cCCChhHHHH
Confidence 44556689999999999999988632 2 3444444321 1122335667
Q ss_pred hhccCcCCC---cceeccccccceeeeccccceeccccceEeecCCCce
Q 012867 312 MDLGWMGPN---YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (454)
Q Consensus 312 ~~~gl~Gps---~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~ 357 (454)
..+||.-.. -.-.-+|+.+..++..|.+..|..--..+|+..+|++
T Consensus 120 ~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELC 168 (356)
T COG3424 120 GELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELC 168 (356)
T ss_pred hhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeee
Confidence 777775322 2234699999999999999999999999999999973
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.029 Score=51.27 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=62.8
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccc-eeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCG-VLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vG-V~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
-|++.|++..|++.+++++ +|| +++||..+-.. .=.++..+...||
T Consensus 55 TmA~nAa~~ll~~~~id~~--------~Ig~l~vgTES~vD~-------------------------sKs~~t~v~~ll~ 101 (174)
T PF01154_consen 55 TMAANAAKPLLDRYNIDPD--------DIGRLIVGTESGVDK-------------------------SKSISTYVHQLLG 101 (174)
T ss_dssp HHHHHHHHTTHHHHT-HHH--------HEEEEEEE-SS-SBS-------------------------SS-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHH--------HccEEEEeccccccc-------------------------cccHHHHHHHHhC
Confidence 4889999999998777764 334 67777532111 0114677888999
Q ss_pred CcCCC----cceeccccccceeeeccccceeccccc--eEeecCCCc
Q 012867 316 WMGPN----YSISTACATSNFCILNAANHIIRGEAN--VMLCGGSDA 356 (454)
Q Consensus 316 l~Gps----~tv~tACsSsl~AI~~A~~~I~~G~~d--~aLvGGvd~ 356 (454)
+.|.. +-+-.||-++..||..|+.+|.++..| .+||.++|.
T Consensus 102 ~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDi 148 (174)
T PF01154_consen 102 LSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDI 148 (174)
T ss_dssp TTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEE
T ss_pred cCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccc
Confidence 96642 345779999999999999999998765 899999997
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.063 Score=40.50 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=38.9
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..|.++ +|||..+++.++++...|+. + +...+|++ +|...++
T Consensus 18 i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~-i----~~~~~~~~-~ti~~l~ 64 (67)
T PF00550_consen 18 IDPDTDFFDLGLDSLDAIELVSELEEEFGIK-I----PPSDLFEH-PTIRDLA 64 (67)
T ss_dssp TSTTSBTTTTTSSHHHHHHHHHHHHHHHTSS-T----THHHHCTS-SSHHHHH
T ss_pred CCCCCCHHHhCCchHHHHHHHHHHHHHHcCC-C----CHHHHHcC-CCHHHHH
Confidence 3557778889 99999999999999999987 6 77888887 8877665
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=0.24 Score=51.74 Aligned_cols=37 Identities=30% Similarity=0.254 Sum_probs=33.6
Q ss_pred eecCceeeehHHhHHHhhccceeeeeecCcceecccc
Q 012867 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY 431 (454)
Q Consensus 395 ~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~ 431 (454)
++||++++||++.+.|++.|.+++++|.|++...+..
T Consensus 274 ~sDGAAAvVL~See~A~~lg~~p~a~I~g~~~a~~~p 310 (417)
T PRK06025 274 VVDGAAALLLASKAYAEKHGLKPRARIVAMANMGDDP 310 (417)
T ss_pred CCcceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCc
Confidence 6899999999999999999999999999999887653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 454 | ||||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 7e-58 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 1e-55 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 2e-52 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 2e-52 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 1e-51 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 4e-51 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 4e-51 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 5e-51 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 2e-50 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 4e-50 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 7e-50 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 6e-47 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 4e-43 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 5e-43 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 6e-39 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 9e-38 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 1e-36 | ||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 4e-36 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 2e-35 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 5e-33 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 6e-33 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 2e-31 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 2e-31 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 6e-31 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 6e-31 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 7e-31 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 8e-31 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 3e-30 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 8e-28 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 1e-26 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 3e-26 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 3e-26 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 1e-25 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 3e-24 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 3e-24 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 2e-23 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 2e-11 | ||
| 3zen_D | 3089 | Cryo-em Structure Of The Mycobacterial Fatty Acid S | 3e-05 | ||
| 2uv9_A | 1878 | Crystal Structure Of Fatty Acid Synthase From Therm | 4e-05 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 5e-05 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 7e-05 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 2e-04 |
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 | Back alignment and structure |
|
| >pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces Lanuginosus At 3.1 Angstrom Resolution. This File Contains The Alpha Subunits Of The Fatty Acid Synthase. The Entire Crystal Structure Consists Of One Heterododecameric Fatty Acid Synthase And Is Described In Remark 400 Length = 1878 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 402 bits (1035), Expect = e-138
Identities = 125/294 (42%), Positives = 173/294 (58%), Gaps = 5/294 (1%)
Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
+ HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F
Sbjct: 7 HHHSSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFD 66
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
AAEI+ F D + K + R D + LY L A ++A+ + + L++ + GV+
Sbjct: 67 VHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVI 123
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
+ SG+GG+K D + L K++ P +P A NM S +AM G G SI+TAC
Sbjct: 124 VASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTAC 183
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
++SN I +A I G +VML GG++A++ P + GF A ALS DPT+AS P+D
Sbjct: 184 SSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFD 242
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+R+GFVMGEG+G+L+LE LEHA+KRGA I AE G T DAYHMT PHP+G
Sbjct: 243 KDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQ 296
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-136
Identities = 122/281 (43%), Positives = 176/281 (62%), Gaps = 4/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 4 LEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDAT 63
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +KRMD+F + + A ++A+ D + +NEL+ + GVLIG+G+GG+KV D
Sbjct: 64 QFLDRKEAKRMDRFCHFAVCASQQAINDAKLV---INELNADEIGVLIGTGIGGLKVLED 120
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 121 QQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRL 180
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+G
Sbjct: 181 VQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+L+LEELE A RGAKIY E G + T DAYH+T P PDG
Sbjct: 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGR 281
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-136
Identities = 125/281 (44%), Positives = 184/281 (65%), Gaps = 4/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ + E + ++ G IGSG+GG+ + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEE 131
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+L +K++PF VP NM + L + G GP+ SI+TA + I +AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARI 191
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+L+LEE EHAKKRGAKIYAE G +SDAYHMT P +G
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGA 292
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 393 bits (1013), Expect = e-135
Identities = 116/281 (41%), Positives = 183/281 (65%), Gaps = 5/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G V+P+G++ + + N +GV+G++++ + FP KIAAE+K F +
Sbjct: 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD+F Y + + + A+ D G+ +++ + ++ GV IGSG+GGM+ F
Sbjct: 61 KYLEKKEARKMDRFTHYAIASAEMAVQDSGLV---IDDSNANRVGVWIGSGIGGMETFET 117
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
E +++++PF VP +MGS +++ G G N + TACAT+ I +A
Sbjct: 118 QYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKV 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG+A+ M+ GG++A + + L GF A +ALS N DP A RP+D +RDGF++GEGAG
Sbjct: 178 IERGDADAMITGGAEAPITKMSLAGFTANKALS-LNPDPETACRPFDKDRDGFIIGEGAG 236
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+++LEE EHAK RGAKIYAE G T DAYH+T P P+G+
Sbjct: 237 IVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGE 277
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 393 bits (1011), Expect = e-134
Identities = 116/281 (41%), Positives = 174/281 (61%), Gaps = 5/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 25 SQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIE 84
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F
Sbjct: 85 DHIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEI 141
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
A + L ++++PF VP +M + +++DLG GPN + TACAT I A
Sbjct: 142 AHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKI 201
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
+ RG+A+ M+ GG++A + + + GF A RALS N+D A RP+ RDGFVMGEGAG
Sbjct: 202 VQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAG 260
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+L++E LE A+ RGA IYAE G T DAYH+T P P+G+
Sbjct: 261 ILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGE 301
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 392 bits (1009), Expect = e-134
Identities = 124/294 (42%), Positives = 178/294 (60%), Gaps = 11/294 (3%)
Query: 157 KKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK 216
H +RVV+TG+GLVSPL + + LL G SG + F+ +IA I
Sbjct: 2 AHHHHHHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIP 61
Query: 217 S-------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
F+ D + PK +++D F++Y + A +AL D G N+ D+ + GVLI
Sbjct: 62 VGDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGW--HPENDEDQVRTGVLI 119
Query: 270 GSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACA 328
GSG+GG++ +A LR ++++PF +P N+ S +++ GPN+S+ TACA
Sbjct: 120 GSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACA 179
Query: 329 TSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWD 387
T I +AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D
Sbjct: 180 TGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYD 239
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+RDGFVMGEGAG+++LEELEHA RGAKIYAE G + DA+H+T P G+
Sbjct: 240 EDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGE 293
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-134
Identities = 106/294 (36%), Positives = 164/294 (55%), Gaps = 11/294 (3%)
Query: 155 TTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAE 214
+ + + + +RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA
Sbjct: 12 SIEGRSRLH-RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAY 70
Query: 215 IKS------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
+ F+ +V+ K M + + A + A+ D G +E D+ GV
Sbjct: 71 VPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGW--HPQSEADQVATGVA 128
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
IG G+ ++V + + Y K++PF VP NM + +++ GPN+++STAC
Sbjct: 129 IGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAC 188
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
T + ++ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+
Sbjct: 189 TTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFH 247
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
RDGFVMGEGA VL+LEE EHA +R A+IYAE G + DA H+T P P+G+
Sbjct: 248 PKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGE 301
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-134
Identities = 121/278 (43%), Positives = 178/278 (64%), Gaps = 5/278 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +R+D+F+ Y L A + AL D G+ +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLK---PEDLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVMGEGAGVL+
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
LE EHAKKRGA+IYAE G ++DA+H+TEPHP+G
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGK 275
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 389 bits (1003), Expect = e-133
Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 13/302 (4%)
Query: 150 PDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPT 209
E T+ M RVVVTG+G+VSPLG ++ + L+ G SG+ +
Sbjct: 10 GTLEAQTQGPGSMT-LRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSA 68
Query: 210 KIAAEIK--------SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELD 261
K+ ++ F + V K ++MD+F+ + A +ALA+ G E
Sbjct: 69 KVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGW--APEAEQQ 126
Query: 262 KSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320
+ + ++ SG+GG +A+ ++++PF +PF +N+ + +++ + GP
Sbjct: 127 RERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPL 186
Query: 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-P 379
TACA S I +A I GEA+V+L GG++AA + LGGF A RALS ++ P
Sbjct: 187 GCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEP 246
Query: 380 TKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
+ASRP+D +RDGFVMGEGA ++++E L+HA RGA+ AE G T+DAYHMT D
Sbjct: 247 VRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDD 306
Query: 440 GD 441
G
Sbjct: 307 GS 308
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 386 bits (993), Expect = e-132
Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 11/287 (3%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
MK +RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 1 MK-RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVA 59
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
P+ RMD+ + + ++A A G+ + LD ++ GV +GS +
Sbjct: 60 EGFGPRELDRMDRASQFAVACAREAFAASGLD---PDTLDPARVGVSLGSAVAAATSLER 116
Query: 282 AIEALR-------ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 334
L + ++ + ++ A +A +G GP +ST C + +
Sbjct: 117 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 176
Query: 335 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394
NA I G A+VM G +D + PI + F A RA + RN+DP ASRP+D RDGFV
Sbjct: 177 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFV 236
Query: 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+ EGA + +LE+ + A RGA+I+AE G + +AYHMT DG
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGR 283
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-130
Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 9/290 (3%)
Query: 155 TTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF--PTKIA 212
+ + VVVT + + + + + + LL G SGI +E T + KI
Sbjct: 2 SQPSTANGGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIG 61
Query: 213 AEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSG 272
+K + +RM G + G E +D + V++G+G
Sbjct: 62 GHLKDPVDS-HMGRLDMRRMSYVQRMGKLLGGQLWESAGSPE-----VDPDRFAVVVGTG 115
Query: 273 LGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSN 331
LGG + ++ + + +K++P V N +A++ + LG + +AC++ +
Sbjct: 116 LGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGS 175
Query: 332 FCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391
I +A I+ G+A+V +CGG + + + + F RA+S RN++P +ASRP+D +RD
Sbjct: 176 EAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRD 235
Query: 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
GFV GE ++L+E EHAK RGAK A G TSDA+HM P DG
Sbjct: 236 GFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGV 285
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-130
Identities = 86/281 (30%), Positives = 128/281 (45%), Gaps = 5/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTS-FPTKIAAEIKSFST 220
KRVV+TGMG V+ LG D L G + + + +D T++AA + F+
Sbjct: 3 GSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQ 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
K ++ M + +Y + A + ALAD G D + + GV GS G ++
Sbjct: 63 PADWPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIR 120
Query: 281 DAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
L + + + +++ G S+ACA+ + I A
Sbjct: 121 AFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYE 180
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
+I G+ +ML GG++ + F A S RN++P RP+D RDG V+GEGA
Sbjct: 181 NIAMGKQTLMLAGGAEEL-SGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGA 239
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
L+LEE EHAK RGA I+AE G SD HMT+P
Sbjct: 240 ATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTAST 280
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 373 bits (961), Expect = e-127
Identities = 87/298 (29%), Positives = 136/298 (45%), Gaps = 14/298 (4%)
Query: 148 VQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF 207
V + T VVVTG+ + + L + + + LL+ SGI ++ F
Sbjct: 15 VPRGSHMVT----GKAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEF 70
Query: 208 --PTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
P +I + D + +RM ++ + G E D ++
Sbjct: 71 DLPVRIGGHLL-EEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEV-----DTNRL 124
Query: 266 GVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324
V IG+GLG + + + +R K ++P V N +A + ++ +
Sbjct: 125 MVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPV 184
Query: 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKAS 383
+ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A
Sbjct: 185 SACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 244
Query: 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
RP+D +RDGFV GEG +LL+E EHAK RGA I A G S TSD +HM P P+G+
Sbjct: 245 RPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGE 302
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 373 bits (960), Expect = e-127
Identities = 110/296 (37%), Positives = 167/296 (56%), Gaps = 21/296 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTS--------------FPTK 210
+RVVVTG+G+V+PLG + + L++G GI + D +K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 211 IAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
+AA + S G L SK + F+ Y + A +AL D E +K + GV
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGV 118
Query: 268 LIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTA 326
IG G+G + +A + + ++++PF +P NM S ++M G+ GPN++ TA
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRP 385
CAT I +A I G+A+VM+ GG+++++ + + GF RALS + N P +ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 386 WDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
+D +RDGFV+GEG+GV++LEE EHAK+RGAKIYAE G + DA+H+T+P DG
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGK 294
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 365 bits (940), Expect = e-124
Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 8/281 (2%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 6 DDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAP 65
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ +L + D LTA AL D L GV+ + GG +
Sbjct: 66 DHIPGRLLPQTDPSTRLALTAADWALQDAKAD---PESLTDYDMGVVTANACGGFDFTHR 122
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L K ++ + + + +++ G GP+ ++ A + +A
Sbjct: 123 EFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRT 182
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG +++ GG D+A+ P G +A +S DP +A P+D G+V GEG
Sbjct: 183 IRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTA-TDPDRAYLPFDERAAGYVPGEGGA 240
Query: 401 VLLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDG 440
+L+LE+ A+ RG Y E G + T D + P G
Sbjct: 241 ILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGR-PAG 280
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-122
Identities = 103/293 (35%), Positives = 149/293 (50%), Gaps = 5/293 (1%)
Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
+ + + +RVVVTGMG+VS +G + +L E SGIS E + F
Sbjct: 7 HHMGTLEAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFR 66
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
++ + V + + + + A +A+AD G+TE+ E+ + G++
Sbjct: 67 CQVHG-APDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGII 122
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
+GSG + D+ + R K++ PF VP A ++ SA LA G NYSIS+AC
Sbjct: 123 MGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSAC 182
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
ATSN CI NA I G+ + M GG + + + S+ N+ P+ ASR +D
Sbjct: 183 ATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYD 242
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
NRDGFV+ GAGVL+LE+LE A RGAKIY E G TSD Y M P +G
Sbjct: 243 KNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAPSGEG 295
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-122
Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 7/279 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K+ + M +Y + ++A+AD G++ + + + G++ GSG G + +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPE--AYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 285 ALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
A+R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMGEGAGV 401
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+++EELEHA RGA IYAE G TSD M P +G
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 276
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-105
Identities = 63/308 (20%), Positives = 117/308 (37%), Gaps = 16/308 (5%)
Query: 146 VAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT 205
V V+ D E K + G + P+ ++ + G + +
Sbjct: 926 VIVEEDLEPFEASK---ETAEQFKHQHGDKVDIFEIPETG-EYSVKLLKGAT-LYIPKAL 980
Query: 206 SFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGKKALADGGIT--EDVMNELD 261
F +A +I + ++ + + ++D L++L + +A GIT ++ +
Sbjct: 981 RFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVH 1040
Query: 262 KSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321
S+ G GSG+GG+ + N M + + + + GP
Sbjct: 1041 VSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIK 1100
Query: 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND--- 378
+ ACATS + I+ G+A + + GG D G F +A S +
Sbjct: 1101 TPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEGSFEFGNMKATSNTLEEFEH 1159
Query: 379 ---PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE 435
P + SRP R+GF+ +GAG+ ++ + + A K G IY + +D +
Sbjct: 1160 GRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSV 1219
Query: 436 PHPDGDIM 443
P P I+
Sbjct: 1220 PAPGKGIL 1227
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 5/99 (5%)
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
+G S L R L R K ++ + E +
Sbjct: 1224 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQ-IKDWVENEL---EALKLEAEEIP 1279
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGD 441
++ E +R +I+ E + D
Sbjct: 1280 SEDQNEFLLERTREIHNEAE-SQLRAAQQQWGNDFYKRD 1317
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 2e-82
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 12/267 (4%)
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGK 244
++ + G + + F +A +I + ++ + + ++D L++L +
Sbjct: 1162 EYSVKLLKGAT-LYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVV 1220
Query: 245 KALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFAT 302
+A GIT ++ + S+ G GSG+GG+ + N
Sbjct: 1221 EAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFI 1280
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 362
M + + + + GP + ACATS + I+ G+A + + GG D G
Sbjct: 1281 NTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEG 1339
Query: 363 LGGFVACRALSQRNND------PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
F +A S + P + SRP R+GF+ +GAG+ ++ + + A K G
Sbjct: 1340 SFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVP 1399
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGDIM 443
IY + +D + P P I+
Sbjct: 1400 IYGIVAMAATATDKIGRSVPAPGKGIL 1426
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 4e-82
Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 10/266 (3%)
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGK 244
+ G + + F +A +I + + + P + +++D LY+L +
Sbjct: 1137 QYTVRLRKGAT-LLIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVA 1195
Query: 245 KALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFAT 302
+AL GIT + + S+ G IGSG+GG + +
Sbjct: 1196 EALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFV 1255
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSD-----AA 357
M + + + L GP + ACAT+ + + I++G+A V L GG D +
Sbjct: 1256 NTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGS 1315
Query: 358 VIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417
+G + R +P + SRP R+GF+ +G GV ++ + A + G I
Sbjct: 1316 YEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPI 1375
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGDIM 443
Y S +D + P P ++
Sbjct: 1376 YGIVAMTSTATDKIGRSVPAPGQGVL 1401
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
Query: 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNM 305
A+ DGGI L + GV +G DA EAL + + + + M
Sbjct: 89 AIVDGGI---NPASLRGTSTGVWVGV------SSSDASEALSRDPETLVGYSMIGCQRAM 139
Query: 306 GSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGG 365
+ L+ + GP+ +I TAC++S + +A I GE + + GG + + P
Sbjct: 140 MANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQ 199
Query: 366 FVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS 425
F+ LS R +D G+ E +LL + A+ ++YA
Sbjct: 200 FMKLGMLS-----QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILNAG 250
Query: 426 FTSDAY 431
+D
Sbjct: 251 TNTDGS 256
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 300 FATTNMGSAM---LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
T S +A LG GP ++ TAC++ + A + R E + L GG
Sbjct: 169 VGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTV 228
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
P F + L+ +P+ DGF + EGAGVL+L+ L A++ G
Sbjct: 229 MSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRP 283
Query: 417 IYAEFRGGSFTSD 429
+ A RG + D
Sbjct: 284 VLAVLRGSAVNQD 296
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 300 FATTNMGSAM---LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
T + ++ +G GP+ S+ TAC++S + A + +GE+++ + GG+
Sbjct: 147 SVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAV 206
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
P F RAL+ S+ + DGF EG ++LLE L A++ G +
Sbjct: 207 MATPGVFVDFSRQRALA-----ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHE 261
Query: 417 IYAEFRGGSFTSD 429
+ A RG + D
Sbjct: 262 VLAVVRGSALNQD 274
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 61/281 (21%), Positives = 104/281 (37%), Gaps = 60/281 (21%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE---------------------IETFDCT 205
VV+ GM P F++NL+ GV +++ + FD +
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDAS 65
Query: 206 SFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
F G V PK + MD + LL +A+ DGGI + L +
Sbjct: 66 FF--------------G-VHPKQAHTMDPQLRLLLEVTYEAIVDGGI---NPDSLRGTHT 107
Query: 266 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM---LAMDLGWMGPNYS 322
GV +G + EAL + + + + M L+ + GP+ +
Sbjct: 108 GVWVGVS------GSETSEALSRDPETLVGY---SMVGCQRAMMANRLSFFFDFRGPSIA 158
Query: 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKA 382
+ TAC++S + NA I G+ + GG + + P F+ LS P
Sbjct: 159 LDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGT 213
Query: 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRG 423
+ +D +G+ EG +LL + A+ ++YA
Sbjct: 214 CKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILN 250
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 7e-08
Identities = 61/477 (12%), Positives = 116/477 (24%), Gaps = 155/477 (32%)
Query: 19 CMSFTCGSRDPHQPPSVLRRYTNNK-REGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGS 77
+V R K R+ L R K GV G SG
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----------SGK 163
Query: 78 SHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTAT----LNRRQRRLR 133
+ + + C Y F + NS T L + ++
Sbjct: 164 ---------TWVALDVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 134 LNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNN---LL 190
N +RS + + + + + +K K Y N +L
Sbjct: 211 PNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKP-------------------YENCLLVL 250
Query: 191 EGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALA 248
V F+ C KI LLT
Sbjct: 251 LNVQNAKAWNAFNLSC-----KI---------------------------LLTT-----R 273
Query: 249 DGGITEDVMNELDKSKCGVLIGSGLG---GMKVFYDAI----EALRISYKKMNPFCVPFA 301
+T+ + L + + + L NP +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--- 330
Query: 302 TTNMGSAMLAMDLG----WMGPNYS-ISTACATSNFCILNAANH--------IIRGEANV 348
++ + + L W N ++T +S +L A + + A++
Sbjct: 331 --SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 349 ------MLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
++ + + + + +L ++ + S P +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIP-S--------------I 431
Query: 403 LLEELEHAKKRGA---KI---YAEFRGGSFTSDAYHMTEPHPDGDIM--LGGVQDYH 451
LE + A I Y + D+ + P+ D +G +H
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKT----FDSDDLIPPYLDQYFYSHIG----HH 480
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.87 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.85 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.84 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.82 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.81 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.81 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.81 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.78 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.77 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.76 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.75 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.74 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.74 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.73 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.72 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.72 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.7 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.7 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.69 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.68 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.66 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.65 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.62 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.54 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.47 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.45 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.38 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.34 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.34 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.33 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.32 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.29 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.27 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.25 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.23 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.2 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.17 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.16 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.14 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.12 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.11 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.0 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 98.99 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 98.97 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 98.91 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 98.84 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 98.84 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 98.81 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 98.81 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 98.68 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 98.65 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 98.54 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 98.5 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 98.44 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 98.02 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 96.03 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 95.83 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 94.84 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 94.58 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 93.71 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 92.99 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 92.89 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 91.5 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 90.55 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 90.19 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 88.77 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 88.54 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 87.53 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 86.19 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 85.99 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 84.71 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 83.74 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 83.68 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 82.4 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 81.5 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 81.36 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 81.22 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 80.83 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 80.57 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 80.11 |
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-56 Score=460.85 Aligned_cols=289 Identities=43% Similarity=0.723 Sum_probs=270.8
Q ss_pred CCccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHH
Q 012867 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (454)
Q Consensus 161 ~~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l 240 (454)
...+++|||||||+++|+|.++++||++|++|+++|+++++|+...++.++++.+++||+.+||++++++.|||+++|++
T Consensus 14 ~~~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l 93 (427)
T 3ho9_A 14 CVSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGI 93 (427)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHH
T ss_pred CCCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHH
Confidence 44578999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCC
Q 012867 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (454)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp 319 (454)
+++++||+|||++++ +++..++|||+|++.+++...++.+..+.. +...++|+.++....+.++++|++.||++||
T Consensus 94 ~aa~~AL~dAGl~~~---~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp 170 (427)
T 3ho9_A 94 VAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGP 170 (427)
T ss_dssp HHHHHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHCCCCcc---cccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCCCC
Confidence 999999999999876 678899999999999998887777766653 5667889999999999999999999999999
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
+++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+.+|..+++++..+.+|++.|+|||.+++||++|||+
T Consensus 171 ~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~geGA 250 (427)
T 3ho9_A 171 SISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGA 250 (427)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEE
T ss_pred eecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCceeeeeE
Confidence 99999999999999999999999999999999999999999999999999999987777888999999999999999999
Q ss_pred eeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++||||++++|+++|++||++|+|+++++|++|++.|++.+.++.++|+++|+
T Consensus 251 aavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~ 303 (427)
T 3ho9_A 251 GMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALR 303 (427)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHH
T ss_pred EEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998874
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-56 Score=456.74 Aligned_cols=282 Identities=35% Similarity=0.541 Sum_probs=259.3
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|++|+|||||+++|+|.++++||++|++|+++++++++|+...++.+++++|+ ||+.+|+++++++.|||+++|+++++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~-fd~~~~~~~~~~~~~d~~~~l~l~aa 79 (406)
T 2vba_A 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLIDRKVVRFMSDASIYAFLSM 79 (406)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCC-CCCTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEec-CChhhcCCHHHHHhcCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999988888888899998 99999999999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhc-cccceeeecccCcchhhHHHHHHHH--HhhhccCceeccccccccchhHHhhhccCcCCC
Q 012867 244 KKALADGGITEDVMNELDK-SKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~-~~vGV~vG~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps 320 (454)
++||+|||++++ .++. +|+|||+|++.+++...++.+..+. .+...++|+.++....++++++|++.||++||+
T Consensus 80 ~~Al~dAg~~~~---~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp~ 156 (406)
T 2vba_A 80 EQAIADAGLSPE---AYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVN 156 (406)
T ss_dssp HHHHHHHTCCHH---HHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCE
T ss_pred HHHHHHCCCChh---HcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccCCCce
Confidence 999999999976 5666 8999999999999888777776664 345567888888889999999999999999999
Q ss_pred cceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhc-ccCCCCCCCCCccCCCCceeeecCc
Q 012867 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 321 ~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~-~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
++|+++|+||++||++|+++|++|+||++||||+|.++++..+. |..+++|+. ++++|++.|||||.+++|+++|||+
T Consensus 157 ~~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~gEGa 235 (406)
T 2vba_A 157 YSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGG 235 (406)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEE
T ss_pred eeeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccccCcCcCCCCceEeeceE
Confidence 99999999999999999999999999999999999988887777 999999985 4555889999999999999999999
Q ss_pred eeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|||++++|+++|++||++|+|+++++|++|+|.|+ +.++.++|+++|+
T Consensus 236 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p~--~~~~~~ai~~al~ 286 (406)
T 2vba_A 236 GMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMH 286 (406)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSCC--SHHHHHHHHHHHT
T ss_pred EEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887 7778888888874
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=456.29 Aligned_cols=288 Identities=42% Similarity=0.733 Sum_probs=267.8
Q ss_pred CccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHH
Q 012867 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~ 241 (454)
+.|++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++.+.+++||+.+++++++++.|||+++|+++
T Consensus 4 ~~m~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~ 83 (416)
T 1e5m_A 4 LEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVC 83 (416)
T ss_dssp --CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHH
T ss_pred CCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHHHHHH
Confidence 34578999999999999999999999999999999999999998899999999999999988999999999999999999
Q ss_pred hcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcCCC
Q 012867 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (454)
Q Consensus 242 aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps 320 (454)
++++||+|||++++ ++++.++|||+|++.+++..+++.+..+. .+....+|+.++....+.++++|++.||++||+
T Consensus 84 aa~~Al~dAg~~~~---~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~ 160 (416)
T 1e5m_A 84 ASQQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPN 160 (416)
T ss_dssp HHHHHHHHHTCCCC---TTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHcCCChh---hcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCCCCce
Confidence 99999999999875 67888999999999988877777666554 355678898899889999999999999999999
Q ss_pred cceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCce
Q 012867 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (454)
Q Consensus 321 ~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaa 400 (454)
++|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+.++++|++.|||||.+++|+++|||++
T Consensus 161 ~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~geGaa 240 (416)
T 1e5m_A 161 NCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240 (416)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEE
T ss_pred eCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCceeeeeEE
Confidence 99999999999999999999999999999999999988999889999999999777778999999999999999999999
Q ss_pred eeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 401 alvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++|||++++|+++|++||++|+|+++++|++|++.|+|++.++.++|+++|+
T Consensus 241 avvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~ 292 (416)
T 1e5m_A 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALK 292 (416)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHH
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998874
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=453.84 Aligned_cols=284 Identities=32% Similarity=0.495 Sum_probs=261.1
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCcc-ccchhhhhhhHHHHHHHHhc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW-VAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~f-i~~~~a~~mdp~~rl~l~aa 243 (454)
++|+|||||+++|+|.++++||++|++|+++++++++|+.+.++..+.+++ +||+.+| |++++++.|||+++|+++++
T Consensus 3 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~-~fd~~~~~i~~~~~~~~d~~~~l~l~aa 81 (424)
T 1tqy_A 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEA-DFDPVAEGFGPRELDRMDRASQFAVACA 81 (424)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCHHHHTCCHHHHHHSCHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCCCcccccCCcceeEEe-ccCHhhcCCCHHHHHhcCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999888888888888 8999999 99999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH---HhhhccCceeccccccccchh----HHhhhccC
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR---ISYKKMNPFCVPFATTNMGSA----MLAMDLGW 316 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~a~----~is~~~gl 316 (454)
++||+|||++++ ++++.|+|||+|++.+++...++.+..+. .+....+++.++...+++.++ +|++.||+
T Consensus 82 ~~AL~dAG~~~~---~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl 158 (424)
T 1tqy_A 82 REAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGA 158 (424)
T ss_dssp HHHHHHHTCCTT---TCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTC
T ss_pred HHHHHHCCCCch---hcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCC
Confidence 999999999876 67889999999999998887777766654 234456676666666666666 99999999
Q ss_pred cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeee
Q 012867 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (454)
Q Consensus 317 ~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~G 396 (454)
+||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++++.++.+|++.|||||.+++|+++|
T Consensus 159 ~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~g 238 (424)
T 1tqy_A 159 EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238 (424)
T ss_dssp CSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTCCCBCEE
T ss_pred CCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCCCceeee
Confidence 99999999999999999999999999999999999999998899888999999999977777899999999999999999
Q ss_pred cCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 397 EGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
||++++|||++++|+++|++||++|+|+++++|+++++.|+|+|+++.++|+++|+
T Consensus 239 eGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~ 294 (424)
T 1tqy_A 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALD 294 (424)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHH
T ss_pred cceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998874
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=448.33 Aligned_cols=284 Identities=31% Similarity=0.430 Sum_probs=264.4
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCC-CCcccccccccccccCccccchhhhhhhHHHHHHHH
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT-SFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~-~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~ 241 (454)
.|++|||||||+++|+|.++++||++|++|+++++++++|+.. .++.++.++|++||+.+||++++++.|||+++|+++
T Consensus 4 ~m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~ 83 (412)
T 4ewg_A 4 SMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVR 83 (412)
T ss_dssp CCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHH
Confidence 4679999999999999999999999999999999999998876 788889999999999999999999999999999999
Q ss_pred hcchhhhcCCc-cHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCC
Q 012867 242 AGKKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (454)
Q Consensus 242 aa~eALedAG~-~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp 319 (454)
++++||+|||+ +++ .++..++|||+|++.+++...++++..+.. +....+++.++....+.++++|++.||++||
T Consensus 84 aa~~Al~dAGl~~~~---~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp 160 (412)
T 4ewg_A 84 ASELALADAGFAGDE---SISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGR 160 (412)
T ss_dssp HHHHHHHHHTCTTCG---GGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTCCSC
T ss_pred HHHHHHHhcCCCCcc---ccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCCCCC
Confidence 99999999999 554 678899999999999999888888777664 5567888888999999999999999999999
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
+++|+++|+|+++||++|+++|++|+||++||||+|. +++..+..|..++.++..+.+|++.|||||.+++|+++|||+
T Consensus 161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geGA 239 (412)
T 4ewg_A 161 IVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGA 239 (412)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCEE
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECeE
Confidence 9999999999999999999999999999999999999 889889999999999987788899999999999999999999
Q ss_pred eeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++||||++++|+++|++||++|+|+++++|++|++.|+ +.++.++|+++|+
T Consensus 240 aavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~--~~~~~~ai~~Al~ 290 (412)
T 4ewg_A 240 ATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPT--ASTMARAMQLALE 290 (412)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSCC--HHHHHHHHHHHHH
T ss_pred EEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999884 6677888888774
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=450.45 Aligned_cols=285 Identities=41% Similarity=0.695 Sum_probs=265.1
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
+++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++.+.+++||+.+++++++++.|||+++|+++++
T Consensus 27 ~~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa 106 (437)
T 2gqd_A 27 NKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAA 106 (437)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHH
T ss_pred CCCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998889999999999999988899999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||++++ ++++.++|||+|++.+++..+++.+..+. .+...++|+.+++...+.++++|++.||++||+++
T Consensus 107 ~~AL~dAGl~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~~~ 183 (437)
T 2gqd_A 107 REAVKDAQLDIN---ENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGA 183 (437)
T ss_dssp HHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSSEEC
T ss_pred HHHHHHcCCCcc---ccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCCCCceEE
Confidence 999999999876 67789999999999998877776665554 35567888888888899999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|+++||++|+++|++|+||++||||+|.+++|..+.+|..+++|++ +++|++.|||||.+++|+++|||++++
T Consensus 184 v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~G~v~geGaaav 262 (437)
T 2gqd_A 184 TVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGIL 262 (437)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSSCTTCTTCCSBCBBCEEEEE
T ss_pred ecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC-CCCCccccCCCCCCCCCceeeceEEEE
Confidence 9999999999999999999999999999999999889998899999999985 445889999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++++|+++|++||++|+|+++++|+++++.|+|+++++.++|+++|+
T Consensus 263 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~ 312 (437)
T 2gqd_A 263 VIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMD 312 (437)
T ss_dssp EEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHH
T ss_pred EECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=449.22 Aligned_cols=288 Identities=42% Similarity=0.696 Sum_probs=267.8
Q ss_pred CccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCccccccccc-------ccccCccccchhhhhhhH
Q 012867 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------SFSTDGWVAPKLSKRMDK 234 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-------~fd~~~fi~~~~a~~mdp 234 (454)
..|++|||||||+++|+|.++++||++|++|+++|+++++|+.+.++..+++.++ +||+.+||++++++.|||
T Consensus 7 ~~~~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~i~~~~~~~~d~ 86 (428)
T 3kzu_A 7 HHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDP 86 (428)
T ss_dssp --CCCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCBSSSSTTCBCGGGTSCHHHHTTSCH
T ss_pred ccccceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCCccccccCcCceeeEecccccccccCChhhcCCHHHHHhCCH
Confidence 4578999999999999999999999999999999999999999988888888887 899999999999999999
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhh-hhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhh
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNE-LDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAM 312 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~-~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~ 312 (454)
+++|+++++++||+|||++++ + ++..++|||+|++.+++...++++..+.. +...++|+.+++...++.+++|++
T Consensus 87 ~~~l~l~aa~~AL~dAGl~~~---~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~ 163 (428)
T 3kzu_A 87 FIVYAVGAADQALDDAGWHPE---NDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSI 163 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC---SHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChh---hhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHH
Confidence 999999999999999999875 4 67789999999999998887777766654 566788998999999999999999
Q ss_pred hccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCC
Q 012867 313 DLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRD 391 (454)
Q Consensus 313 ~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~ad 391 (454)
.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+..|...++++.. +++|++.|+|||.+++
T Consensus 164 ~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~ 243 (428)
T 3kzu_A 164 KHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRD 243 (428)
T ss_dssp HHTCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTTCC
T ss_pred HcCCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999864 5567889999999999
Q ss_pred ceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 392 G~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|+++|||++++|||++++|+++|++||++|+|+++++|+++++.|++.+.++.++|+++|+
T Consensus 244 G~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~ 304 (428)
T 3kzu_A 244 GFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALK 304 (428)
T ss_dssp SBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHH
T ss_pred ceeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988874
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=447.54 Aligned_cols=285 Identities=42% Similarity=0.747 Sum_probs=266.5
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|++|+|||||+++|+|.++++||++|++|+++++++++|+.+.++.++++++ +||+.+|+++++++.|||+++|+++++
T Consensus 1 M~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~fd~~~~~~~~~~~~~d~~~~l~~~aa 79 (408)
T 1j3n_A 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAA 79 (408)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeccccCcccCccceEEEE-ccChhhcCCHHHHHhcCHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999888888999999 899999999999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||++++ +++..++|||+|++.+++..+++.+..+. .+...++|+.++....++.+++|++.||++||+++
T Consensus 80 ~~AL~dAGl~~~---~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~~ 156 (408)
T 1j3n_A 80 QLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSST 156 (408)
T ss_dssp HHHHHHHTCCGG---GSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCC
T ss_pred HHHHHHcCCCcc---ccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCCCCceeC
Confidence 999999999976 67888999999999999887777666554 35667889888888999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|+++||++|+++|++|+||++||||+|.+++|..+.+|...++|+..+++|++.|||||.++||+++|||++++
T Consensus 157 v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGaaav 236 (408)
T 1j3n_A 157 VVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVL 236 (408)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEE
T ss_pred ccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeEEEE
Confidence 99999999999999999999999999999999998999999999999999977777889999999999999999999999
Q ss_pred ehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++++|+++|++||++|+|+++++|++|++.|+|.++++.++|+++|+
T Consensus 237 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~ 286 (408)
T 1j3n_A 237 VLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALK 286 (408)
T ss_dssp EEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHH
T ss_pred EEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=449.63 Aligned_cols=285 Identities=37% Similarity=0.620 Sum_probs=263.5
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccc------cccCccccchhhhhhhHHHH
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS------FSTDGWVAPKLSKRMDKFML 237 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~------fd~~~fi~~~~a~~mdp~~r 237 (454)
+++|||||||+++|+|.++++||++|.+|+++|+++++|+.+.++.++++++++ ||+.+|+++++++.|||+++
T Consensus 20 ~~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp ECCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 468999999999999999999999999999999999999888888889998877 99999999999999999999
Q ss_pred HHHHhcchhhhcCCccH-HHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhcc
Q 012867 238 YLLTAGKKALADGGITE-DVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 238 l~l~aa~eALedAG~~~-~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
|+++++++||+|||+++ + .+++.++|||+|++.+++..+++.+..+. .+...++|+.+++...++++++|++.||
T Consensus 100 l~l~aa~~AL~dAGl~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 176 (438)
T 2iwz_A 100 MAIGAAELAMKDSGWHPQS---EADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYK 176 (438)
T ss_dssp HHHHHHHHHHHHHTCCCCS---HHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCcc---cccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhC
Confidence 99999999999999986 5 56778999999999998887777766654 3556788888888889999999999999
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceee
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~ 395 (454)
++||+++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+.. .+|++.|||||.+++|+++
T Consensus 177 l~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~p~~~~~pfd~~~~G~~~ 255 (438)
T 2iwz_A 177 LKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN-SDPKLACRPFHPKRDGFVM 255 (438)
T ss_dssp CCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-SCTTTSCCTTCTTCCSBCB
T ss_pred CCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC-CCCCcccccCCCCCCCEEe
Confidence 999999999999999999999999999999999999999988889888899999999853 2478999999999999999
Q ss_pred ecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 396 GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||++++|||++++|+++|++||++|+|+++++|+++++.|+|.++++.++|+++|+
T Consensus 256 geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~ 312 (438)
T 2iwz_A 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALK 312 (438)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHH
T ss_pred eceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998874
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-54 Score=445.27 Aligned_cols=288 Identities=43% Similarity=0.698 Sum_probs=266.8
Q ss_pred CCccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHH
Q 012867 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (454)
Q Consensus 161 ~~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l 240 (454)
.+.|++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++.+++++||+.+|+++++++.|||+++|++
T Consensus 19 ~m~m~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l 98 (430)
T 1ox0_A 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYAL 98 (430)
T ss_dssp SCCCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHH
T ss_pred cccCCCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHH
Confidence 45678999999999999999999999999999999999999998889999999999999998999999999999999999
Q ss_pred HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcCC
Q 012867 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (454)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp 319 (454)
+++++||+|||++++ +++..++|||+|++.+++....+.+..+. .+...++|+.++....++++++|++.||++||
T Consensus 99 ~aa~~AL~dAG~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp 175 (430)
T 1ox0_A 99 YAAQEAVNHANLDVE---ALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGV 175 (430)
T ss_dssp HHHHHHHHHTTCCTT---TSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHcCCChh---hcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcCCCc
Confidence 999999999999876 67888999999999988877766665554 35667888989999999999999999999999
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
+++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+. ++.|++.|||||++++|+++|||+
T Consensus 176 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~-~~~p~~~~~pFd~~~~g~~~geGA 254 (430)
T 1ox0_A 176 CKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGS 254 (430)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CSSTTSSSCTTBTTCCSBCBCCEE
T ss_pred eEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC-CCCCCCCCCCCCCCCCCccccceE
Confidence 9999999999999999999999999999999999999888888888999998874 345889999999999999999999
Q ss_pred eeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|||++++|+++|++||++|+|+++++|+++++.|++.+.++.++|+++|+
T Consensus 255 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~ 307 (430)
T 1ox0_A 255 GMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALE 307 (430)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHH
T ss_pred EEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998874
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=444.67 Aligned_cols=286 Identities=41% Similarity=0.727 Sum_probs=269.2
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
.+++|+|||||+++|+|.++++||++|++|+++++++++|+.+.++.++++++++||+.+||++++++.|||+++|++++
T Consensus 2 ~~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~A 81 (413)
T 3o04_A 2 DKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIAS 81 (413)
T ss_dssp CCCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGTSCHHHHTTSCHHHHHHHHH
T ss_pred CCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhccCHHHHhhCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred cchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCc
Q 012867 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (454)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (454)
+++||+|||++++ ++++.++|||+|++.+++..++..+..+.. +....+|+.+++...++++++|++.||++||++
T Consensus 82 a~~AL~dAGl~~~---~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~~ 158 (413)
T 3o04_A 82 AEMAVQDSGLVID---DSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINS 158 (413)
T ss_dssp HHHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTCCSCEE
T ss_pred HHHHHHHcCCChh---HcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCCCCcce
Confidence 9999999999876 778899999999999999888877776653 566788988999999999999999999999999
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
+|+++|+|+++||++|+++|++|+||++||||+|.++++..+.+|..+++++. +.+|++.|+|||.+++|+++|||+++
T Consensus 159 ~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~g~~~gdGAaa 237 (413)
T 3o04_A 159 TTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGI 237 (413)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSCCTTBTTCCSBCBBCEEEE
T ss_pred eecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC-CCCCCCCcCCCcCCCCCceEeccEEE
Confidence 99999999999999999999999999999999999999999999999999984 45688999999999999999999999
Q ss_pred eehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 402 lvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+|||++++|+++|++||++|+|+++++|++|++.|.|.+.++.++|+++|+
T Consensus 238 vvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~ 288 (413)
T 3o04_A 238 VILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAID 288 (413)
T ss_dssp EEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHH
T ss_pred EEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998874
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-54 Score=446.91 Aligned_cols=286 Identities=37% Similarity=0.524 Sum_probs=258.8
Q ss_pred CCCccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHH
Q 012867 160 PHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (454)
Q Consensus 160 ~~~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~ 239 (454)
.++.+++|+|||||+++|+|.++++||++|++|+++++++++|+...++.++++. .+||+.+||++++++.|||+++|+
T Consensus 18 ~~~~m~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~-~~fd~~~~i~~~~~~~~d~~~~l~ 96 (428)
T 3mqd_A 18 GPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLVDRRAMRFHGRGTAWN 96 (428)
T ss_dssp ----CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEEC-CCCCHHHHSCTGGGTTCCHHHHHH
T ss_pred CCCCCCCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCcccccCCCcccccc-cCCChhhcCCHHHHhhCCHHHHHH
Confidence 3456789999999999999999999999999999999999998888888888777 589999999999999999999999
Q ss_pred HHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcC
Q 012867 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (454)
Q Consensus 240 l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G 318 (454)
++++++||+|||++++ .++..++|||+|++.+++...++++..+. .+....+|+.+++...++++++|++.||++|
T Consensus 97 ~~aa~~Al~dAGl~~~---~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g 173 (428)
T 3mqd_A 97 HIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKG 173 (428)
T ss_dssp HHHHHHHHHHHTCCHH---HHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCChh---HccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCCCC
Confidence 9999999999999987 67789999999999888877777666555 4667789999999999999999999999999
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCCceeeec
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGE 397 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~adG~v~GE 397 (454)
|+++|+++|+||++||++|+++|++|+||++||||+|. +++.....|..+++++.. +.+|++.|||||.+++||++||
T Consensus 174 p~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~-~s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gE 252 (428)
T 3mqd_A 174 INYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCED-LDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAG 252 (428)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBC
T ss_pred ceeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeecc-cchHHHHHHHHhhhhcccccCCcccccCcccCCCCCccccc
Confidence 99999999999999999999999999999999999999 455556668999998865 5668999999999999999999
Q ss_pred CceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 398 GaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|+++||||++++|+++|++||++|+|+++++|+++++.| .+.++.++|+++|+
T Consensus 253 GAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P--~~~~~~~ai~~Al~ 305 (428)
T 3mqd_A 253 GAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS 305 (428)
T ss_dssp EEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC--CSHHHHHHHHHHHT
T ss_pred ceEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988 67778888888874
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=441.16 Aligned_cols=282 Identities=24% Similarity=0.378 Sum_probs=260.7
Q ss_pred ccceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
..++|+|||||+++|+|.++++||++|++|+++++++++|+...++.+++++|++||+.+|+++++++.|||+++|++++
T Consensus 7 ~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~a 86 (415)
T 1tqy_B 7 DDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTA 86 (415)
T ss_dssp ---CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHH
T ss_pred CCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999888888899999999999899999999999999999999
Q ss_pred cchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCc
Q 012867 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (454)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (454)
+++||+|||++++ +++..++|||+|++.+++...++.+..+.. +...++|+.+++...+.++++|++.||++||++
T Consensus 87 a~~AL~dAGl~~~---~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~ 163 (415)
T 1tqy_B 87 ADWALQDAKADPE---SLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSS 163 (415)
T ss_dssp HHHHHHHTTCCGG---GSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCE
T ss_pred HHHHHHHcCCCcc---ccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCCCceE
Confidence 9999999999976 677889999999999999888877776653 556788998999999999999999999999999
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCcee
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaa 401 (454)
+|+++|+||++||++|+++|++| ||++||||+|.++++..+..|..+++|+. +++|++.|+|||.+++|+++|||+++
T Consensus 164 ~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~-~~~~~~~~~pfd~~~~G~~~geGaaa 241 (415)
T 1tqy_B 164 ALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGAI 241 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC-CSCGGGSCCTTSTTCCCBCBBCEEEE
T ss_pred eecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC-CCCCCCCcCCCCCCCCCcceeeeEEE
Confidence 99999999999999999999999 99999999999899999999999999986 55578999999999999999999999
Q ss_pred eehHHhHHHhhccc-eeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 402 LLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 402 lvLe~l~~A~~~G~-~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+|||++++|+++|+ +||++|+|+++++|+++++.|++ ++.++|+++|+
T Consensus 242 vvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~---~~~~ai~~al~ 290 (415)
T 1tqy_B 242 LVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALN 290 (415)
T ss_dssp EEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC---SHHHHHHHHHH
T ss_pred EEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH---HHHHHHHHHHH
Confidence 99999999999999 99999999999999999999988 66778887763
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-53 Score=440.57 Aligned_cols=285 Identities=29% Similarity=0.474 Sum_probs=262.2
Q ss_pred CccceEEEecccccccCCCCchhHHhhhhccccCCccccccc--CCCCcccccccccccccCccccchhhhhhhHHHHHH
Q 012867 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~--~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~ 239 (454)
..+++|||||||+++|+|.++++||++|++|+++|+++++|+ ...++.++++++++ |+.+|+++++++.|||+++|+
T Consensus 25 ~~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~-d~~~~~~~~~~~~~d~~~~l~ 103 (434)
T 2gp6_A 25 KAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLE-EFDHQLTRIELRRMGYLQRMS 103 (434)
T ss_dssp TTSCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSC-CSTTSSCHHHHHTCCHHHHHH
T ss_pred CCCCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCC-chhhhCCHHHHHhCCHHHHHH
Confidence 345789999999999999999999999999999999999887 56778888888987 888889999999999999999
Q ss_pred HHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcC
Q 012867 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (454)
Q Consensus 240 l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~G 318 (454)
++++++||+|||+. .+++.++|||+|++.+++...++.+..+.. +...++|+.+++...++++++|++.||++|
T Consensus 104 l~aa~~ALedAG~~-----~~~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl~G 178 (434)
T 2gp6_A 104 TVLSRRLWENAGSP-----EVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKA 178 (434)
T ss_dssp HHHHHHHHHHTTCC-----CCCTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHhcCCC-----ccCCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcCCC
Confidence 99999999999993 567789999999999999877777766543 455678888888899999999999999999
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhh-hhhcccCCCCCCCCCccCCCCceeeec
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASRPWDINRDGFVMGE 397 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~-~Ls~~~~~p~~~~rpFd~~adG~v~GE 397 (454)
|+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+..|..++ +++..+..|++.|+|||.+++|+++||
T Consensus 179 p~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~~g~v~gd 258 (434)
T 2gp6_A 179 GVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGE 258 (434)
T ss_dssp CEECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTCCCCCBBC
T ss_pred CeEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccCCCcceec
Confidence 9999999999999999999999999999999999999988888888999999 888766778999999999999999999
Q ss_pred CceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 398 GaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|++++|||++++|+++|++||++|+|+++++|+++++.|++.+.++.++|+++|+
T Consensus 259 GAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~ 313 (434)
T 2gp6_A 259 GGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQ 313 (434)
T ss_dssp CEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHH
T ss_pred ceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998874
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-53 Score=437.48 Aligned_cols=285 Identities=30% Similarity=0.475 Sum_probs=263.0
Q ss_pred CccceEEEecccccccCCCCchhHHhhhhccccCCccccccc--CCCCcccccccccccccCccccchhhhhhhHHHHHH
Q 012867 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~--~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~ 239 (454)
..+++|||||||+++|+|.++++||++|++|+++|+++++|+ ...++.++++++++ |+.+|+++++++.|||+++|+
T Consensus 9 ~~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~d~~~~l~ 87 (416)
T 2wge_A 9 GGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMGRLDMRRMSYVQRMG 87 (416)
T ss_dssp TSSCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSS-CGGGGCCHHHHHHSCHHHHHH
T ss_pred CCCCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCC-chhhhCCHHHHHhcCHHHHHH
Confidence 346789999999999999999999999999999999999887 55678888999988 888889999999999999999
Q ss_pred HHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcC
Q 012867 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (454)
Q Consensus 240 l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G 318 (454)
++++++||+|||+. .++.+++|||+|++.+++...++.+..+. .+...++|+.++....+..+++|++.||++|
T Consensus 88 l~aa~~AL~dAG~~-----~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~g 162 (416)
T 2wge_A 88 KLLGGQLWESAGSP-----EVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARA 162 (416)
T ss_dssp HHHHHHHHHHTTCC-----CCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCC-----ccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhccCC
Confidence 99999999999993 56788999999999999988777776654 3566788988889999999999999999999
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecC
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEG 398 (454)
|+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+..|...++++..+.+|++.|||||++++|+++|||
T Consensus 163 p~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG 242 (416)
T 2wge_A 163 GVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA 242 (416)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred CcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence 99999999999999999999999999999999999999888888889999999987777789999999999999999999
Q ss_pred ceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 399 aaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++++|||++++|+++|++||++|+|+++++|+++++.|++.+.++.++|+++|+
T Consensus 243 aaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~ 296 (416)
T 2wge_A 243 GALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLE 296 (416)
T ss_dssp EEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHH
T ss_pred eEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988874
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=435.98 Aligned_cols=286 Identities=35% Similarity=0.594 Sum_probs=266.3
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCccccccccc--------ccccCccccchhhhhhhHH
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK--------SFSTDGWVAPKLSKRMDKF 235 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~--------~fd~~~fi~~~~a~~mdp~ 235 (454)
+++|||||||+++|+|.++++||++|++|+++++++++|+.+.++.++++.++ +||+.+||++++++.|||+
T Consensus 23 ~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~g~v~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 102 (451)
T 4ddo_A 23 TLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRF 102 (451)
T ss_dssp -CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCHHHHTTSSCCEEECCCCTTTCTTTCCCGGGTSCHHHHTTSCHH
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceEccccccccccccchhhhCCHHHHhhCCHH
Confidence 47899999999999999999999999999999999999998888888888887 7999999999999999999
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhh-hccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhh
Q 012867 236 MLYLLTAGKKALADGGITEDVMNEL-DKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~-~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
++|+++++++||+|||++++ ++ +..++|||+|++.+++...++++..+.. +...++|+.++....++.+++|++.
T Consensus 103 ~~L~l~Aa~~AL~dAGl~~~---~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 179 (451)
T 4ddo_A 103 IQMAMVAADEALAEAGWAPE---AEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIK 179 (451)
T ss_dssp HHHHHHHHHHHHHHHTCCCC---SHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChh---hcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHH
Confidence 99999999999999999876 56 7789999999999998888877776654 5567889989999999999999999
Q ss_pred ccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCCc
Q 012867 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDG 392 (454)
Q Consensus 314 ~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~adG 392 (454)
||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|...++++.. +.+|.+.|+|||.+++|
T Consensus 180 lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~g 259 (451)
T 4ddo_A 180 HRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDG 259 (451)
T ss_dssp HTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCS
T ss_pred hcCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999864 55677899999999999
Q ss_pred eeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 393 ~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|||++++|||++++|+++|++||++|+|++.++|+++++.|.|++.++.++|+++|+
T Consensus 260 ~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~ 319 (451)
T 4ddo_A 260 FVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALR 319 (451)
T ss_dssp BCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHH
T ss_pred cEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998874
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=432.85 Aligned_cols=282 Identities=38% Similarity=0.668 Sum_probs=255.0
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccC--------------CCCccccccccc------ccccCccc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--------------TSFPTKIAAEIK------SFSTDGWV 224 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~--------------~~~~~~~~g~i~------~fd~~~fi 224 (454)
++|||||||+++|+|.++++||++|++|+++|+++++|+. ..++.+++++|+ +||+.+|+
T Consensus 1 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~~~~ 80 (431)
T 2ix4_A 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (431)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CcEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCChhhhhccccccccccccccCcccceeEEeccccccccCChhhcC
Confidence 3699999999999999999999999999999999998873 345667778777 79998888
Q ss_pred cchhhhhhhHHHHHHHHhcchhhhcCCc-cHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccc
Q 012867 225 APKLSKRMDKFMLYLLTAGKKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFAT 302 (454)
Q Consensus 225 ~~~~a~~mdp~~rl~l~aa~eALedAG~-~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 302 (454)
+++ .|||+++|+++++++||+|||+ +++ .++..++|||+|++.+++..+++.+..+.. +....+|+.+++..
T Consensus 81 ~~~---~~d~~~~l~l~aa~~AL~dAG~~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 154 (431)
T 2ix4_A 81 NSK---AVANFIGYAVCAADEALRDAEWLPTE---EEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKIL 154 (431)
T ss_dssp CST---TCCHHHHHHHHHHHHHHHHTTCCCCS---HHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHC
T ss_pred Chh---hCCHHHHHHHHHHHHHHHHcCCCCcc---ccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcch
Confidence 876 8999999999999999999999 765 567789999999999888777776665543 45667888888888
Q ss_pred cccchhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCC
Q 012867 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTK 381 (454)
Q Consensus 303 ~~~~a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~ 381 (454)
.++++++|++.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+.+|..+++|+.+ +.+|++
T Consensus 155 ~~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~ 234 (431)
T 2ix4_A 155 VNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQE 234 (431)
T ss_dssp TTHHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGG
T ss_pred hHHHHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999998888888889999999854 456789
Q ss_pred CCCCccCCCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 382 ASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 382 ~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
.|||||.+++|+++|||++++|||++++|+++|++||++|+|+++++|++|++.|++.++++.++|+++|+
T Consensus 235 ~~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~ 305 (431)
T 2ix4_A 235 ASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALR 305 (431)
T ss_dssp SCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=501.02 Aligned_cols=269 Identities=23% Similarity=0.354 Sum_probs=238.6
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccc-cccCCCCc-cccccc---ccccccCcc-ccchhhhhhhHHHH
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSFP-TKIAAE---IKSFSTDGW-VAPKLSKRMDKFML 237 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~~~-~~~~g~---i~~fd~~~f-i~~~~a~~mdp~~r 237 (454)
|++||||||||++|+|.++++||++|.+|++++++.+ +|+...+. ....+. ++.||+.|| |+|+|++.||||||
T Consensus 1 m~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~fd~~~f~i~~~ea~~~dpq~r 80 (2512)
T 2vz8_A 1 MEEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLR 80 (2512)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECSSSSCTTGGGCCSEEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCCCcccccccccCcccceecCCcccCCHhhcCCCHHHHHhcCHHHH
Confidence 4689999999999999999999999999999999874 46544221 233444 445999999 99999999999999
Q ss_pred HHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc
Q 012867 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (454)
Q Consensus 238 l~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~ 317 (454)
++|+++|||||||||+++ .++++++|||+|++.++|.. .+.......+++.+++...+++++||||.|||+
T Consensus 81 l~l~~~~eAle~Ag~~~~---~~~~~~~gv~~G~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~ 151 (2512)
T 2vz8_A 81 MLLEVTYEAIVDGGINPA---SLRGTSTGVWVGVSSSDASE------ALSRDPETLVGYSMIGCQRAMMANRLSFFFDFK 151 (2512)
T ss_dssp HHHHHHHHHHGGGTCCGG---GGTTCSCEEEEEECCCHHHH------HTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCChh---hcCCCCeEEEEEeccHHHHH------HHhcCccccCcceecccchhHHHHHHHHHhCCC
Confidence 999999999999999976 78889999999998765432 222334567888899999999999999999999
Q ss_pred CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeec
Q 012867 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (454)
Q Consensus 318 Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GE 397 (454)
||+++|+||||||++|||+||++|++|+||+|||||+|.+++|..+.+|+++++|| |+++|||||+++|||++||
T Consensus 152 Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls-----~~g~c~~Fd~~adG~~~gE 226 (2512)
T 2vz8_A 152 GPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS-----QDGTCRSFDAEGTGYCRAE 226 (2512)
T ss_dssp SCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC-----TTCSCCSSSTTCCCBCBBC
T ss_pred CCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC-----CCCCCCCCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CceeeehHHhHHHhhccceeeeeecCcceecccc---ccCCCCCCCcceecccccccc
Q 012867 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 398 GaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~---~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|+|+||||++++|+ +|||+|+|+++|+||+ ++|+| ++.++.++|+++|+
T Consensus 227 G~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P--~~~~q~~~i~~al~ 278 (2512)
T 2vz8_A 227 AVVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFP--SGDVQEQLIRSLYA 278 (2512)
T ss_dssp EEEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSC--CHHHHHHHHHTTSG
T ss_pred eEEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCC--CHHHHHHHHHHHHH
Confidence 99999999999996 5999999999999995 46765 56677888888884
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=458.54 Aligned_cols=274 Identities=22% Similarity=0.359 Sum_probs=245.0
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccccCCcccc--c-ccCCCC-----------ccccccccc---ccccCcc-c
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIE--T-FDCTSF-----------PTKIAAEIK---SFSTDGW-V 224 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~--~-~~~~~~-----------~~~~~g~i~---~fd~~~f-i 224 (454)
.++||||||||++|+| .++++||++|.+|++++++++ + |+.+.+ +.+.+++++ .||+.+| |
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i 84 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSYVDKGGFLDDAAGFDAEFFGV 84 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTTSTTCBSCCEEBCCSCSSEECHHHHTC
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccccCCCcccceeEEeCCccccCHhhcCC
Confidence 4679999999999999 899999999999999999884 3 543222 344566664 5999999 9
Q ss_pred cchhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccc
Q 012867 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTN 304 (454)
Q Consensus 225 ~~~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 304 (454)
+++|++.|||+++|+++++|+||||||++++ ++++.++|||+|++.+++..... ....++++.+++...+
T Consensus 85 ~~~ea~~mdp~~rL~leaa~eALedAGi~~~---~i~~~~~gV~vG~~~~~~~~~~~-------~~~~~~~~~~~g~~~~ 154 (915)
T 2qo3_A 85 SPREAAAMDPQQRLLLETSWELVENAGIDPH---SLRGTATGVFLGVAKFGYGEDTA-------AAEDVEGYSVTGVAPA 154 (915)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHTTCCGG---GGTTBCCEEEEECCCCCTTTTCC----------CTTCHHHHTTCHH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHcCCChH---HcCCcceEEEEEecCchHHhhhc-------cccccccccccccccc
Confidence 9999999999999999999999999999986 77889999999999887754331 1234577778888888
Q ss_pred cchhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCC
Q 012867 305 MGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (454)
Q Consensus 305 ~~a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~r 384 (454)
+++++|++.|||+||+++|+++||||++||++|+++|++|+||++||||+|.+++|..+..|..+++|+ +++.||
T Consensus 155 ~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls-----~~g~~~ 229 (915)
T 2qo3_A 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA-----ADGRSK 229 (915)
T ss_dssp HHHHHHHHHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBC-----SSCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccC-----CCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999889999999998 899999
Q ss_pred CccCCCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 385 PWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 385 pFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||.++|||++|||+|+||||++++|+++|++||++|+|+++|+||++.+.+.|++.++.++|+++|+
T Consensus 230 ~Fd~~adG~v~gEGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~ 297 (915)
T 2qo3_A 230 AFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALE 297 (915)
T ss_dssp TTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHH
T ss_pred cccCCCCceeecCceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888999998874
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=455.02 Aligned_cols=274 Identities=22% Similarity=0.334 Sum_probs=243.9
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccccCCcccc--c-ccCCCCccccccccc---ccccCcc-ccchhhhhhhHH
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIE--T-FDCTSFPTKIAAEIK---SFSTDGW-VAPKLSKRMDKF 235 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~--~-~~~~~~~~~~~g~i~---~fd~~~f-i~~~~a~~mdp~ 235 (454)
.++||||||||++|+| .++++||++|.+|+++|++++ + |+.+ ...+++++++ .||+.+| |+|+|++.|||+
T Consensus 38 ~~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~~-~~~~~~~~l~~~~~fD~~~f~i~~~ea~~mdp~ 116 (917)
T 2hg4_A 38 GEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEPD-PDARLGGMLAAAGDFDAGFFGISPREALAMDPQ 116 (917)
T ss_dssp HCCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCCC-SSCCEEBCCTTTTEECTGGGTCCHHHHHHSCHH
T ss_pred CCCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCCC-CCcceeeEecCccccChhhcCCCHHHHHhcCHH
Confidence 5789999999999987 789999999999999999874 3 4332 2345566654 6999999 999999999999
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
++|+++++|+||||||++++ ++++.++|||+|++.++|..... ......+++.+++...++++++|++.||
T Consensus 117 ~rl~leaa~eALedAGi~~~---~i~~~~~gV~vG~~~~d~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris~~lg 187 (917)
T 2hg4_A 117 QRIMLEISWEALERAGHDPV---SLRGSATGVFTGVGTVDYGPRPD------EAPDEVLGYVGTGTASSVASGRVAYCLG 187 (917)
T ss_dssp HHHHHHHHHHHHHHTTCCGG---GGTTSCEEEEEEECCCCCSCCTT------SSCGGGGGGHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCChH---HcCCcceEEEEEeCCchhhhhhh------cCccccCcccccccccchHHHHHHHhcC
Confidence 99999999999999999986 77889999999999877654321 1234456677777888899999999999
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceee
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~ 395 (454)
|+||+++|+++||||++||++|+++|++|+||++||||+|.+++|..+..|..+++|+ |++.|||||.++|||++
T Consensus 188 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls-----~~g~~~pFd~~adG~~~ 262 (917)
T 2hg4_A 188 LEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFGL 262 (917)
T ss_dssp CCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC-----TTSCCCTTBTTCCCBCB
T ss_pred CCCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC-----CccccCcccccccCCCC
Confidence 9999999999999999999999999999999999999999999998888899999998 89999999999999999
Q ss_pred ecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 396 GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|||+|+||||++++|+++|++||++|+|+++|+||++...+.|.+.++.++|+++|+
T Consensus 263 gEGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~ 319 (917)
T 2hg4_A 263 AEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALE 319 (917)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877778888888888888874
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=456.28 Aligned_cols=269 Identities=24% Similarity=0.404 Sum_probs=236.3
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccc-cccCCCC-cccccc---cccccccCcc-ccchhhhhhhHHHH
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSF-PTKIAA---EIKSFSTDGW-VAPKLSKRMDKFML 237 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~~-~~~~~g---~i~~fd~~~f-i~~~~a~~mdp~~r 237 (454)
+++||||||||++|+|.++++||++|.+|++++++++ +|+...+ .....+ +++.||+.+| |+|+|++.||||||
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~r 82 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLR 82 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHHH
Confidence 5789999999999999999999999999999999985 3543222 122233 4456999999 99999999999999
Q ss_pred HHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc
Q 012867 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (454)
Q Consensus 238 l~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~ 317 (454)
|+++++|+||||||++++ .+++.++|||+|++.+++. ..+......++++.+++...++++++|++.|||+
T Consensus 83 L~leaa~eALedAGi~~~---~i~~~~~Gv~vG~~~~d~~------~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 153 (965)
T 3hhd_A 83 LLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSGSETS------EALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR 153 (965)
T ss_dssp HHHHHHHHHHHHTTCCGG---GGTTSCCEEEEEECCCHHH------HHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCChH---HcCCceeEEEEeccchhHH------HHHhcCccccCcccccccccchHHHHHHHHhCCC
Confidence 999999999999999987 7888999999998865443 2233345567788888889999999999999999
Q ss_pred CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeec
Q 012867 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (454)
Q Consensus 318 Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GE 397 (454)
||+++|+|+||||++|||+|+++|++|+||++||||+|.+++|..+..|.++++|+ |+++|||||.+++||++||
T Consensus 154 GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls-----~~g~~~~Fd~~adG~~~gE 228 (965)
T 3hhd_A 154 GPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSE 228 (965)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC-----TTCCCCTTBTTCCSBCBBC
T ss_pred CCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC-----CCCccccchhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CceeeehHHhHHHhhccceeeeeecCcceeccccc---cCCCCCCCcceecccccccc
Q 012867 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH---MTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 398 GaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~---~t~P~p~g~g~~~a~~~~~~ 452 (454)
|+|+||||++++|+ +||++|+|+++|+||++ +|.| ++.++.++|+++|+
T Consensus 229 GagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P--~~~~q~~~i~~Al~ 280 (965)
T 3hhd_A 229 GVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFP--SGDIQEQLIRSLYQ 280 (965)
T ss_dssp EEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSC--CHHHHHHHHHHHHH
T ss_pred eEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCC--CHHHHHHHHHHHHH
Confidence 99999999999986 49999999999999965 4554 56667788888874
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=411.38 Aligned_cols=318 Identities=21% Similarity=0.262 Sum_probs=252.7
Q ss_pred CccchhhhhcCCCccccCCCCccccccCCCCcccchhhhhhhhcccc-ccCCcceeEEecc-chhhhccCCCCCccceEE
Q 012867 91 FEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRV-TRSGEAMAVAVQP-DEEVTTKKKPHMKQKRVV 168 (454)
Q Consensus 91 vel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Ia 168 (454)
.+++|++...+|++ + +.+.+||+ ++|.... . +... +.....+...... +.... ....++|+
T Consensus 892 ~~~~~~i~~~tGiR-l----~~~~~fd~-~~p~~~~----~--L~e~~l~~d~~~~~~s~~~a~~~~-----~~~~d~v~ 954 (1688)
T 2pff_A 892 AKYETSILEHSGIR-L----IEPELFNG-YNPEKKE----M--IQEVIVEEDLEPFEASKETAEQFK-----HQHGDKVD 954 (1688)
T ss_dssp TTSSSSSSSGGGTT-T----SSSSCCSS-SSSSCCS----S--SEECCCCCCCSCCCCCCCCTTHHH-----HHHHHSCT
T ss_pred HHHHHHHHHhcCCC-C----CCCccCCC-CCHHHHh----H--hhHHhcCCCCcccccChhhhhhcc-----ccCCCCeE
Confidence 37899999999999 7 77889999 8886522 1 1110 0100000000000 00000 01234555
Q ss_pred EecccccccCCCCchhHHhhhhccccCCcccccccCCCCccccccccc-ccccCcc-ccchhhhhhhHHHHHHHHhcchh
Q 012867 169 VTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKA 246 (454)
Q Consensus 169 ItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~~~~a~~mdp~~rl~l~aa~eA 246 (454)
|++ -.+.++||++|.+|++++.+. ...++..++|+|+ +||+.+| |++++++.|||+++|+++++++|
T Consensus 955 I~~-------i~~~eefW~~L~~G~~~i~p~----~~~~~~~vaG~Ip~gFD~~~fGIs~~ea~~mDP~qrLaLeAa~EA 1023 (1688)
T 2pff_A 955 IFE-------IPETGEYSVKLLKGATLYIPK----ALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEA 1023 (1688)
T ss_dssp TSC-------CCCCCSSSCCCCCCTTCCCCC----CCCEECCSSCSCCCCCCCCCSSCCTTTBTTBCSSTTHHHHHHHHH
T ss_pred Eec-------CCCHHHHHHHHHcCCCEEecC----CCCCCceEEEEECCCCChhhCCCCHHHHhccCHHHHHHHHHHHHH
Confidence 553 346899999999999999883 3456678889997 7999999 99999999999999999999999
Q ss_pred hhcCCcc-HHH-HhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh-hccCcCCCcce
Q 012867 247 LADGGIT-EDV-MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSI 323 (454)
Q Consensus 247 LedAG~~-~~~-~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~-~~gl~Gps~tv 323 (454)
|+||||+ |.. ...++..++|||+|++.+++......+.....+ ...+++.++....|..+++|++ .||++||+++|
T Consensus 1024 LedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~-~~v~~~~l~~~~~nt~Aa~Vs~~~LGl~GPs~TV 1102 (1688)
T 2pff_A 1024 FIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKD-EPVQNDILQESFINTMSAWVNMLLISSSGPIKTP 1102 (1688)
T ss_dssp HTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSSC-CCCCSTTHHHHCTHHHHHHHHHSSCCCCCCCCCC
T ss_pred HHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHhc-CCCCcchhccccHHHHHHHHHHHHcCCcCCeEEe
Confidence 9999997 641 112678899999999999988766554432211 2356666777888999999999 79999999999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc------cCCCCCCCCCccCCCCceeeec
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGE 397 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~------~~~p~~~~rpFd~~adG~v~GE 397 (454)
++|||||++||+.|+++|++|+||+|||||+|. +++..+..|..+++++.. ..+|++.|||||.+++||++||
T Consensus 1103 dtACASSL~AL~lA~~aIrsGeaDvaLVGGvE~-msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rdGfv~GE 1181 (1688)
T 2pff_A 1103 VGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQ 1181 (1688)
T ss_dssp CCTTTTTHHHHHHHHHHHHTTTCSCBCCCCCCC-CCTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCCCCCCCS
T ss_pred cCCCchHHHHHHHHHHHHHCCCCCEEEEeeecc-CCHHHHHHHHhccccccChhhhhcCCChhhccCcCccCCCCCcccc
Confidence 999999999999999999999999999999998 688888999999999843 3358999999999999999999
Q ss_pred CceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCC
Q 012867 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438 (454)
Q Consensus 398 GaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p 438 (454)
|+|++||+++++|+++|++||++|+|+++++|+.+.+.|.|
T Consensus 1182 GAGavVLesle~Al~~G~~IyAvI~GsavnsDg~~~SipAP 1222 (1688)
T 2pff_A 1182 GAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1222 (1688)
T ss_dssp CCEEEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCC
T ss_pred ceEEEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCCCC
Confidence 99999999999999999999999999999999988776666
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=416.22 Aligned_cols=324 Identities=22% Similarity=0.263 Sum_probs=259.8
Q ss_pred ccchhhhhcCCCccccCCCCccccccCCCCcccchhhhhhhhccccccCCcceeEEeccchhhhccCCCCCccceEEEec
Q 012867 92 EPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTG 171 (454)
Q Consensus 92 el~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IaItG 171 (454)
+++|++...+|++ + +.+.+||| ++|..+. ......+.. ...+.......... -+....++|.|+.
T Consensus 1067 ~~~~~i~~~tgir-~----~~~~~fd~-~~p~~~~-~~~~~~~~~----~~~~~~~~~~~a~~----~~~~~~~~~~i~~ 1131 (1878)
T 2uv9_A 1067 KYEKYILEHSGIR-L----IEPELFGG-YDPNRKQ-LLQEVVIEQ----DLEPFEASKEQAEE----FKREHGDKVEIFE 1131 (1878)
T ss_dssp HHHHHHHHTSEEE-E----CCGGGGTT-CCGGGEE-EEEEEECCS----CCCCEEECHHHHHH----HHHHHGGGEEEEE
T ss_pred HHHHHHHHhcCCC-C----CcccccCC-CCHHHHH-HHHHhhccc----CCCccccChhhhhh----ccccCCCCeeEee
Confidence 6689999999999 7 77899999 8886653 111100111 00111111100000 0011246777763
Q ss_pred ccccccCCCCchhHHhhhhccccCCcccccccCCCCccccccccc-ccccCcc-ccchhhhhhhHHHHHHHHhcchhhhc
Q 012867 172 MGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALAD 249 (454)
Q Consensus 172 mg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~~~~a~~mdp~~rl~l~aa~eALed 249 (454)
..+.++||++|.+|++++.+.. ..++..++|+|+ +||+.+| |++++++.|||+++|+++++++||+|
T Consensus 1132 -------~~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL~~ 1200 (1878)
T 2uv9_A 1132 -------IPETGQYTVRLRKGATLLIPKA----LQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLS 1200 (1878)
T ss_dssp -------CTTTSCEEEEECTTCEEEEEEE----ECCSCCEEEECCTTCCHHHHTCCHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred -------CCChHHHHHHHHcCCCeeeecC----CCCcceEEEEeCCCCCHhhcCCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3677999999999999998842 346678889997 7999999 99999999999999999999999999
Q ss_pred CCcc-HHH-HhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh-hccCcCCCcceecc
Q 012867 250 GGIT-EDV-MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSISTA 326 (454)
Q Consensus 250 AG~~-~~~-~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~-~~gl~Gps~tv~tA 326 (454)
|||+ |.. ...++..++|||+|++.+++..+...+.....+ ....++.++....|+++++|++ +||++||+++|++|
T Consensus 1201 AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~-~~v~~~~~~~~~~n~~aa~vs~~~lg~~GP~~tv~tA 1279 (1878)
T 2uv9_A 1201 SGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLD-KPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGA 1279 (1878)
T ss_dssp TTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTT-CCCCSCTTGGGSHHHHHHHHHHHTCCCCCCBCCBCCG
T ss_pred CCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhc-CCCCchhhhcchHHHHHHHHHHHhcCCCCCeEEEcCc
Confidence 9997 542 123678999999999999987665544332211 2367777888889999999999 59999999999999
Q ss_pred ccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc------cCCCCCCCCCccCCCCceeeecCce
Q 012867 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEGAG 400 (454)
Q Consensus 327 CsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~------~~~p~~~~rpFd~~adG~v~GEGaa 400 (454)
|+||++||+.||+.|++|+||+|||||+|. +++..+..|..+++++.. +.+|++.|||||.+++||++|||+|
T Consensus 1280 CASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r~Gfv~gEGag 1358 (1878)
T 2uv9_A 1280 CATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCG 1358 (1878)
T ss_dssp GGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTCCCBCBBCEEE
T ss_pred chHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCccCCCCCcccceeE
Confidence 999999999999999999999999999998 788889999999999842 3468999999999999999999999
Q ss_pred eeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCccee
Q 012867 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIML 444 (454)
Q Consensus 401 alvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~ 444 (454)
++||+++++|+++|++||++|+|+++|+|+++.+.|.| |+|+.
T Consensus 1359 ~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paP-g~G~~ 1401 (1878)
T 2uv9_A 1359 VQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAP-GQGVL 1401 (1878)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCC-CSCGG
T ss_pred EEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCC-Ccchh
Confidence 99999999999999999999999999999998888888 66653
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=411.13 Aligned_cols=319 Identities=21% Similarity=0.259 Sum_probs=255.3
Q ss_pred ccchhhhhcCCCccccCCCCccccccCCCCcccchhhhhhhhcccc-ccCCcceeEEeccchhhhccCCCCCccceEEEe
Q 012867 92 EPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRV-TRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVT 170 (454)
Q Consensus 92 el~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IaIt 170 (454)
+++|++...+|++ + +.+.+||+ ++|.... . +... ......+.....+.+. . -.....++|+|+
T Consensus 1092 ~~~~~i~~~tgir-~----~~~~~fd~-~~p~~~~----~--l~~~~~~~~~~~~~~~~~~a~---~-~~~~~~~~~~I~ 1155 (1887)
T 2uv8_A 1092 KYETSILEHSGIR-L----IEPELFNG-YNPEKKE----M--IQEVIVEEDLEPFEASKETAE---Q-FKHQHGDKVDIF 1155 (1887)
T ss_dssp HHHHHHHHTSSEE-E----CCGGGGTT-CCTTSEE----E--EEEEECSSCCCCEEECHHHHH---H-HHHHHGGGEEEE
T ss_pred HHHHHHHHhcCCC-C----CCcccCCC-CCHHHHH----H--HHHHHhcccccccccCccchh---h-HhhcCCCceeEe
Confidence 6699999999999 7 77899999 8885421 1 1110 1111111111111100 0 001135778887
Q ss_pred cccccccCCCCchhHHhhhhccccCCcccccccCCCCccccccccc-ccccCcc-ccchhhhhhhHHHHHHHHhcchhhh
Q 012867 171 GMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALA 248 (454)
Q Consensus 171 Gmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~~~~a~~mdp~~rl~l~aa~eALe 248 (454)
+ ..+.++||++|.+|++++.+.. ..++..++|+|+ +||+.+| |++++++.|||+++|+++++++||+
T Consensus 1156 ~-------~~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL~ 1224 (1887)
T 2uv8_A 1156 E-------IPETGEYSVKLLKGATLYIPKA----LRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFI 1224 (1887)
T ss_dssp E-------CTTTSCEEEEECTTCEEEEEEE----ECCSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred e-------cCchHHHHHHHHcCCceeeccc----CCCCccEEEEECCCCChhhcCCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5 3468999999999999998853 346678889997 7999999 9999999999999999999999999
Q ss_pred cCCcc-HHH-HhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh-hccCcCCCcceec
Q 012867 249 DGGIT-EDV-MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSIST 325 (454)
Q Consensus 249 dAG~~-~~~-~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~-~~gl~Gps~tv~t 325 (454)
||||+ +.. ...++..++|||+|++.+++......+...... ....++.++....|..+++|++ +||++||+++|++
T Consensus 1225 dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~-~~v~~~~~~~~~~n~~aa~is~~~lgl~GP~~tv~t 1303 (1887)
T 2uv8_A 1225 ASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKD-EPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVG 1303 (1887)
T ss_dssp HTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTT-CCCCTTHHHHHSTTHHHHHHHHHTTCCCSCCCCCCC
T ss_pred HcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhc-CCCCcchhhcchhhHHHHHHHHHHcCCccceEEeec
Confidence 99994 541 123678999999999999987665544332211 2356677777889999999999 5999999999999
Q ss_pred cccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc------cCCCCCCCCCccCCCCceeeecCc
Q 012867 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 326 ACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~------~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
||+||++||+.||++|++|+||+|||||+|. +++..+..|..+++++.. +.+|++.|||||.+++||++|||+
T Consensus 1304 ACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd~~r~Gfv~gEGa 1382 (1887)
T 2uv8_A 1304 ACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGA 1382 (1887)
T ss_dssp GGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTBTTCCSBCBBCEE
T ss_pred ccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCcccCCCcccccce
Confidence 9999999999999999999999999999998 688888999999999842 346899999999999999999999
Q ss_pred eeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCC
Q 012867 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~ 439 (454)
|++|||++++|+++|++||++|+|+++|+|+++.+.|.|.
T Consensus 1383 g~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg 1422 (1887)
T 2uv8_A 1383 GIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPG 1422 (1887)
T ss_dssp EEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCCC
T ss_pred EEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCCC
Confidence 9999999999999999999999999999999988877773
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=386.10 Aligned_cols=267 Identities=21% Similarity=0.281 Sum_probs=226.0
Q ss_pred CchhHHhhhhccccCCcccccccCCCCccccccccc-ccccCcc-ccchhhhhhhHHHHHHHHhcchhhhcCCccHHHHh
Q 012867 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMN 258 (454)
Q Consensus 181 ~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~~~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~ 258 (454)
..+++|+++..|.+++.... ...++.+++|+|+ +||+.+| |++++++.|||+++|+++++++||+||||+++.+.
T Consensus 2594 ~~~~~W~~~~~~~~~i~~p~---~~~~~~~~gG~i~d~FD~~~fgIs~rea~~mDp~~rL~l~aa~eALedAGi~p~~l~ 2670 (3089)
T 3zen_D 2594 PDSSDWEVTRKAGTEIRVPR---KTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELM 2670 (3089)
T ss_dssp TTTCCEEEEECTTCEEEEEE---EECCSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHHHHHHHTTSCSCGGGHH
T ss_pred CCCcceeeeecCCCCcCCCC---cCCccceEEEEcCCCCChhhcCCCHHHHHhcCHHHHHHHHHHHHHHHHcCCCHHHhh
Confidence 34578888888888775433 2346778899994 7999999 99999999999999999999999999999986332
Q ss_pred -hhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh-hccCcCCCcceeccccccceeeec
Q 012867 259 -ELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSISTACATSNFCILN 336 (454)
Q Consensus 259 -~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~-~~gl~Gps~tv~tACsSsl~AI~~ 336 (454)
..++.++|||+|++.|++....+.+..+..+....++ .++..+.|+.++++++ +||++||+++|+++||||++||++
T Consensus 2671 ~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~is~~~lGl~GPs~tV~tACSSsl~Al~~ 2749 (3089)
T 3zen_D 2671 RWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPND-ILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEE 2749 (3089)
T ss_dssp HHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTT-HHHHTSTTHHHHHHHHHTTCCCSCEECCBCTTCHHHHHHHH
T ss_pred cccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccch-hhccccccHHHHHHHHHHcCCCCCceeeccchhhHHHHHHH
Confidence 2367899999999999988777766655443333333 3567778889999986 569999999999999999999999
Q ss_pred cccceeccccceEeecCCCceeeeecccchhhhhhhhc------ccCCCCCCCCCccCCCCceeeecCceeeehHHhHHH
Q 012867 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ------RNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHA 410 (454)
Q Consensus 337 A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~------~~~~p~~~~rpFd~~adG~v~GEGaaalvLe~l~~A 410 (454)
|+++|++|+||+|||||+|. +++..+.+|..+++++. .+.+|++.|||||.+++||++|||+|++|||++++|
T Consensus 2750 A~~~IrsG~~d~aLaGGve~-ls~~~~~~f~~~~als~~~~~~~~~~sp~~~crpFd~~~dG~v~GEGAgavVL~~~e~A 2828 (3089)
T 3zen_D 2750 GVDKIKLGKADLVIAGGFDD-LTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLA 2828 (3089)
T ss_dssp HHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHHTTCCTTTSCCSSBTTCCCBCBBCEEEEEEEEEHHHH
T ss_pred HHHHHHCCCCCeeEEeeecc-cCHHHHHHHHHhhhhhcchhhhhccCCcccccCccccCCCCEEEeccceEEEEeeHHHH
Confidence 99999999999999999999 78989999999998763 356799999999999999999999999999999999
Q ss_pred hhccceeeeeecCcceeccccccCCCCCC-------Ccceecccccccc
Q 012867 411 KKRGAKIYAEFRGGSFTSDAYHMTEPHPD-------GDIMLGGVQDYHC 452 (454)
Q Consensus 411 ~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~-------g~g~~~a~~~~~~ 452 (454)
+++|++||++|.|+++|+||++++.|.|. .+++.++|+++|+
T Consensus 2829 ~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~~ai~~AL~ 2877 (3089)
T 3zen_D 2829 LKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRESTLARSLA 2877 (3089)
T ss_dssp HHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGGSHHHHHHH
T ss_pred HhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHHHHHHHHHH
Confidence 99999999999999999999988877774 1345566777663
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-24 Score=217.50 Aligned_cols=180 Identities=18% Similarity=0.193 Sum_probs=141.9
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
++|+++++++||+|+|++++ +++ +|++|+..+++. ...++.++++.+|
T Consensus 31 ~~L~~~a~~~Al~dAGl~~~---~id----~v~~g~~~~~~~-------------------------~~~~a~~ia~~lg 78 (397)
T 1wl4_A 31 QDLGSTVIKEVLKRATVAPE---DVS----EVIFGHVLAAGC-------------------------GQNPVRQASVGAG 78 (397)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCTTS-------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCCC-------------------------CCHHHHHHHHHcC
Confidence 57999999999999999875 344 688888654321 1346889999999
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee-eeccc-----------------------ch--h
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGLG-----------------------GF--V 367 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~~~-----------------------~f--~ 367 (454)
+ +||+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |.... .| .
T Consensus 79 l~~~~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (397)
T 1wl4_A 79 IPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC 158 (397)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCC
T ss_pred CCCCccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccc
Confidence 9 8999999999999999999999999999999999999998653 32110 01 2
Q ss_pred hhhhhhc---------------------c----c-----------------------CCCCC------------CCCC-c
Q 012867 368 ACRALSQ---------------------R----N-----------------------NDPTK------------ASRP-W 386 (454)
Q Consensus 368 ~~~~Ls~---------------------~----~-----------------------~~p~~------------~~rp-F 386 (454)
.++++++ . | .+++. .||| |
T Consensus 159 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf 238 (397)
T 1wl4_A 159 HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYF 238 (397)
T ss_dssp BHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSS
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 2344321 0 0 01222 5999 9
Q ss_pred cCCCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 387 DINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 387 d~~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|.+++|++ ++||++++||+++++|+++|+++|++|+|++.+++ .|++.+.+...+++++|+
T Consensus 239 d~~~~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~ 306 (397)
T 1wl4_A 239 LTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVT 306 (397)
T ss_dssp CCSSCCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHH
T ss_pred CCCCCCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999874 466667777788887763
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-23 Score=215.47 Aligned_cols=182 Identities=18% Similarity=0.182 Sum_probs=140.8
Q ss_pred HHHHHHHhcchhhhcC-CccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 235 FMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 235 ~~rl~l~aa~eALedA-G~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
.++|+++++++||+|+ |++++ +++ +|++|+..+++. ..+.++.+|++.
T Consensus 30 ~~~L~~~a~~~AL~dA~gl~~~---~id----~v~~g~~~~~~~------------------------~~~~~a~~ia~~ 78 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPG---EVE----DVIWGCVNQTLE------------------------QGWNIARMASLM 78 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGG---GEE----EEEEECSSBSBT------------------------TTTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCCHH---HCC----EEEEEeeccccC------------------------CCCcHHHHHHHH
Confidence 4679999999999999 99875 333 799998754331 124568999999
Q ss_pred ccC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee-eecccch-h------------hhhh------
Q 012867 314 LGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGLGGF-V------------ACRA------ 371 (454)
Q Consensus 314 ~gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~~~~f-~------------~~~~------ 371 (454)
||+ +||+++|+++|+|++.||++|+++|++|+||++||||+|.+.. |.....| . .+++
T Consensus 79 lgl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~ 158 (390)
T 1wdk_C 79 TQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLG 158 (390)
T ss_dssp SSSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHH
T ss_pred cCCCCCccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHH
Confidence 999 8999999999999999999999999999999999999997632 3322111 0 0233
Q ss_pred ----hhcc----------------------cCC--C------CCCCCCccCC---------------------CCcee--
Q 012867 372 ----LSQR----------------------NND--P------TKASRPWDIN---------------------RDGFV-- 394 (454)
Q Consensus 372 ----Ls~~----------------------~~~--p------~~~~rpFd~~---------------------adG~v-- 394 (454)
+++. +++ | .+.|+|||.+ ++|++
T Consensus 159 ~~~g~s~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~ 238 (390)
T 1wdk_C 159 KMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238 (390)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEec
Confidence 2221 000 2 1223799999 79999
Q ss_pred -----eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 395 -----MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 395 -----~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++||+++|||+++++|+++|+++|++|+|++.+++. |++.+.+...+++++|+
T Consensus 239 ~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~ 296 (390)
T 1wdk_C 239 GTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVD-----PAIMGYGPVPATQKALK 296 (390)
T ss_dssp GGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHH
T ss_pred hhcCcccchhheeEEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHH
Confidence 999999999999999999999999999999998753 45556666778877763
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-23 Score=209.67 Aligned_cols=181 Identities=17% Similarity=0.241 Sum_probs=138.2
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
.++|+++++++||+|+|++++ +++ ++++|+..+... ...++.++++.+
T Consensus 27 ~~~L~~~a~~~Al~dAgl~~~---~id----~~~~g~~~~~~~-------------------------~~~~a~~ia~~l 74 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAG---EVN----EVILGQVLPAGE-------------------------GQNPARQAAMKA 74 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCTTS-------------------------CSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCCC-------------------------CcHHHHHHHHHc
Confidence 357999999999999999875 444 567776543210 134689999999
Q ss_pred cCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee-eec---c--------cchh-------------
Q 012867 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG---L--------GGFV------------- 367 (454)
Q Consensus 315 gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~---~--------~~f~------------- 367 (454)
|++ ||+++|+++|+|++.||++|+++|++|+||++||||+|.+.. |.. . ..|.
T Consensus 75 gl~~~~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 2vu1_A 75 GVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYG 154 (392)
T ss_dssp TCCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTC
T ss_pred CCCCCceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhccccccccc
Confidence 998 999999999999999999999999999999999999998543 221 0 0111
Q ss_pred -hhhhhh----------cc----------------------cCC--C-----CCCCCCccCC------------------
Q 012867 368 -ACRALS----------QR----------------------NND--P-----TKASRPWDIN------------------ 389 (454)
Q Consensus 368 -~~~~Ls----------~~----------------------~~~--p-----~~~~rpFd~~------------------ 389 (454)
.+++++ +. +++ | .+.|+|||.+
T Consensus 155 ~~~~~~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~~~~f~~d~~~r~~~t~e~~~~~~~v 234 (392)
T 2vu1_A 155 YHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPA 234 (392)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTCCEEECSCSSCCTTCCHHHHHTCCCS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCCceeeccccccCCCCCHHHHhcCCCc
Confidence 133331 10 000 1 0127899988
Q ss_pred --CCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 390 --RDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 390 --adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++|++ ++||++++||+++++|+++|+++|++|+|++.+++ .|++.+.+...+++++|+
T Consensus 235 ~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~ 301 (392)
T 2vu1_A 235 FDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGV-----DPKVMGTGPIPASRKALE 301 (392)
T ss_dssp SCTTCCCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHH
T ss_pred cCCCCCeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeec-----ChhhcchhHHHHHHHHHH
Confidence 88999 99999999999999999999999999999999874 455556677778877763
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-22 Score=205.38 Aligned_cols=180 Identities=18% Similarity=0.208 Sum_probs=133.4
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
.++|+++++++||+|+|++++ +++ ++++|+..++. .....+.++++.+
T Consensus 32 ~~~l~~~a~~~Al~dAgl~~~---~id----~~~~g~~~~~~-------------------------~~~~~a~~va~~l 79 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKE---EVK----EAYMGNVLQGG-------------------------EGQAPTRQAVLGA 79 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCTT-------------------------SCSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC-------------------------CCchHHHHHHHHc
Confidence 356999999999999999875 444 56777653221 1123588999999
Q ss_pred cC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeec-------------------ccch-------
Q 012867 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------------------LGGF------- 366 (454)
Q Consensus 315 gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~-------------------~~~f------- 366 (454)
|+ +||+++|+++|+|++.||++|+++|++|+||++||||+|.+..... +..+
T Consensus 80 gl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (395)
T 2ib8_A 80 GLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKI 159 (395)
T ss_dssp TCCTTCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTE
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccc
Confidence 99 8999999999999999999999999999999999999997543211 0000
Q ss_pred ----------hhhhhhhccc---------------------------------------CCCCCCCCC--ccC-------
Q 012867 367 ----------VACRALSQRN---------------------------------------NDPTKASRP--WDI------- 388 (454)
Q Consensus 367 ----------~~~~~Ls~~~---------------------------------------~~p~~~~rp--Fd~------- 388 (454)
...+ +++.. .+.|+.+|+ ||+
T Consensus 160 ~m~~~a~~~~~~~g-~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~ 238 (395)
T 2ib8_A 160 HMGSCAENTAKKLN-IARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTV 238 (395)
T ss_dssp EHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCT
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCcc
Confidence 1111 01100 011222332 665
Q ss_pred --CCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 389 --NRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 389 --~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+++|++ ++||++++||+++++|+++|+++|++|+|++.++ +.|++.+.+...+++++|+
T Consensus 239 f~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~ 306 (395)
T 2ib8_A 239 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA-----VEPIDFPIAPVYAASMVLK 306 (395)
T ss_dssp TCSSSCCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHH
T ss_pred ccCCCCCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEec-----cChhhccccHHHHHHHHHH
Confidence 679999 9999999999999999999999999999999875 4555556677778887764
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-22 Score=201.60 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=134.7
Q ss_pred HHHHHHhcchhhhcCC----ccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHh
Q 012867 236 MLYLLTAGKKALADGG----ITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (454)
Q Consensus 236 ~rl~l~aa~eALedAG----~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is 311 (454)
.+|+++++++||+|+| ++++ +++ +|++|+..+++. .+..+.+++
T Consensus 36 ~~La~~Aa~~Al~~Ag~~~~l~~~---~id----~v~~g~~~~~~~-------------------------~~~~a~~va 83 (393)
T 1afw_A 36 DYLLYNFLNEFIGRFPEPLRADLN---LIE----EVACGNVLNVGA-------------------------GATEHRAAC 83 (393)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTCGG---GCC----CEEEECSSSBGG-------------------------GHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHH---HCC----EEEEEecCCCCC-------------------------CChHHHHHH
Confidence 4689999999999999 9875 343 799998754321 134688999
Q ss_pred hhccC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee-eecc-------------cch-----hhhh
Q 012867 312 MDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGL-------------GGF-----VACR 370 (454)
Q Consensus 312 ~~~gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~~-------------~~f-----~~~~ 370 (454)
+.+|+ +||+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |... .+| ..++
T Consensus 84 ~~lGl~~~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (393)
T 1afw_A 84 LASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMG 163 (393)
T ss_dssp HHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCHH
T ss_pred HHcCCCCCceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhHH
Confidence 99999 8999999999999999999999999999999999999997543 2210 011 2223
Q ss_pred hhhc---------------------c----c--------------------CCCCCC------------CCC-ccCCCCc
Q 012867 371 ALSQ---------------------R----N--------------------NDPTKA------------SRP-WDINRDG 392 (454)
Q Consensus 371 ~Ls~---------------------~----~--------------------~~p~~~------------~rp-Fd~~adG 392 (454)
.+++ . | .++|+. +|| ||.++ |
T Consensus 164 ~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~-G 242 (393)
T 1afw_A 164 ITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR-G 242 (393)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----C
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-C
Confidence 2210 0 0 123444 446 98765 8
Q ss_pred ee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 393 FV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 393 ~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++ ++||+++|||+++++|+++|+++|++|+|++.++|. |++.+.+...+|+++|+
T Consensus 243 ~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~ 304 (393)
T 1afw_A 243 TTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVP-----PEIMGVGPAYAIPKVLE 304 (393)
T ss_dssp CCBTTTBCCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHH
T ss_pred CeechhcCcccchhheeeEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHH
Confidence 88 799999999999999999999999999999999984 34445566777877764
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-21 Score=201.94 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=138.2
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
..+|+++++++||+|+|++++ +++ +||+|+..+++. ....+..+++.+
T Consensus 55 ~~~L~~~Aa~~AL~dAgl~~~---~id----~v~~g~~~~~~~-------------------------~~~~a~~~a~~l 102 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPE---QLG----DICVGNVLQPGA-------------------------GAIMARIAQFLS 102 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----CEEEECSSSBGG-------------------------GHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCccc-------------------------cccHHHHHHHHc
Confidence 367999999999999999876 444 799998754331 122456678899
Q ss_pred cC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeec---------c------------cchhh---
Q 012867 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------L------------GGFVA--- 368 (454)
Q Consensus 315 gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~---------~------------~~f~~--- 368 (454)
|+ ++|+++|+++|+|++.||+.|+++|++|++|++||||+|.+..... + .++..
T Consensus 103 Gl~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 182 (418)
T 2iik_A 103 DIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENV 182 (418)
T ss_dssp TCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHH
T ss_pred CCCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHH
Confidence 99 7999999999999999999999999999999999999998654210 0 01100
Q ss_pred ---------------------------hhhhhcc------------------cCCCCCCCCC-------------ccCCC
Q 012867 369 ---------------------------CRALSQR------------------NNDPTKASRP-------------WDINR 390 (454)
Q Consensus 369 ---------------------------~~~Ls~~------------------~~~p~~~~rp-------------Fd~~a 390 (454)
.+.+... ..++++.||| ||.++
T Consensus 183 a~~~gitre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~ 262 (418)
T 2iik_A 183 AERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDG 262 (418)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCC
Confidence 0011000 0124679999 99886
Q ss_pred -----CceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 391 -----DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 391 -----dG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
||++++||++++||++++.|+++|++|+++|+|++.+++ .|++.+.+...+++++|+
T Consensus 263 ~~t~~d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~ 324 (418)
T 2iik_A 263 STTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQ 324 (418)
T ss_dssp CCCSTTBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHH
T ss_pred ceeeccccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999998863 355455666777777763
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-21 Score=196.94 Aligned_cols=183 Identities=19% Similarity=0.161 Sum_probs=136.6
Q ss_pred HHHHHHHHhcchhhhcC-CccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh
Q 012867 234 KFMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (454)
Q Consensus 234 p~~rl~l~aa~eALedA-G~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~ 312 (454)
+.+.|+++++++||+|+ |++++ +++ +|++|+..++.. .....+.++++
T Consensus 26 ~~~~L~~~a~~~Al~~a~gi~~~---~Id----~v~~g~~~~~~~------------------------~~~~~a~~~~~ 74 (387)
T 3goa_A 26 RAEDLSAHLMRSLLARNPSLTAA---TLD----DIYWGCVQQTLE------------------------QGFNIARNAAL 74 (387)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCGG---GCC----EEEEECSCCSBT------------------------TTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCHH---HcC----EEEEEcccCCcc------------------------cccHHHHHHHH
Confidence 45679999999999999 99986 444 789998643221 01235778999
Q ss_pred hccC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecc-------------------cchh----
Q 012867 313 DLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL-------------------GGFV---- 367 (454)
Q Consensus 313 ~~gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~-------------------~~f~---- 367 (454)
.+|+ .+|+++|+++|+|++.||++|+++|++|++|.+||+|+|.+...... .++.
T Consensus 75 ~~Gl~~~~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 154 (387)
T 3goa_A 75 LAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEML 154 (387)
T ss_dssp HTTCCTTSCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHH
T ss_pred HcCCCCCCcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHH
Confidence 9999 68999999999999999999999999999999999999976543211 0000
Q ss_pred -------h--h---------h--------hhhcc--------------cCCCCCCCCC-------------ccC------
Q 012867 368 -------A--C---------R--------ALSQR--------------NNDPTKASRP-------------WDI------ 388 (454)
Q Consensus 368 -------~--~---------~--------~Ls~~--------------~~~p~~~~rp-------------Fd~------ 388 (454)
+ + + .+... ..++++.+|| |+.
T Consensus 155 ~~~~g~tre~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t 234 (387)
T 3goa_A 155 SRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234 (387)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCcee
Confidence 0 0 0 00000 0124556665 665
Q ss_pred CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 389 ~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
-.|+..++||++++||+++++|+++|+++|++|+|++.++|+ |++.+.+...+++++|+
T Consensus 235 ~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----~~~~~~~~~~a~~~al~ 293 (387)
T 3goa_A 235 AGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCD-----PSIMGYGPVPASKLALK 293 (387)
T ss_dssp GGGBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----TTSTTCTHHHHHHHHHH
T ss_pred cccCCCcCccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCC-----CCcchHHHHHHHHHHHH
Confidence 257778999999999999999999999999999999999885 44555566777877764
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-20 Score=193.61 Aligned_cols=179 Identities=19% Similarity=0.210 Sum_probs=135.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
.+|+++++++||+|+|++++ +++ +|++|+..+++. ..+..+.+|++.+|
T Consensus 27 ~~L~~~Aa~~Al~dAgl~~~---~id----~v~~g~~~~~~~------------------------~~~~~a~~va~~lG 75 (401)
T 1ulq_A 27 DDLLAHALSVLVDRSGVPKE---EVE----DVYAGCANQAGE------------------------DNRNVARMALLLAG 75 (401)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCSST------------------------TTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccCCC------------------------CCChHHHHHHHHhC
Confidence 46899999999999999876 344 799998754331 01346899999999
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee-eecc------------------------cchh-
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGL------------------------GGFV- 367 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~~------------------------~~f~- 367 (454)
+ ++|+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |... .+|.
T Consensus 76 l~~~~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p 155 (401)
T 1ulq_A 76 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQ 155 (401)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHHH
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 7999999999999999999999999999999999999998654 3210 1221
Q ss_pred h------hhhh---------------------hccc---------------------------CCCCC------------
Q 012867 368 A------CRAL---------------------SQRN---------------------------NDPTK------------ 381 (454)
Q Consensus 368 ~------~~~L---------------------s~~~---------------------------~~p~~------------ 381 (454)
. ++++ ++.+ .++|+
T Consensus 156 ~~~~~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~~ 235 (401)
T 1ulq_A 156 ALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLA 235 (401)
T ss_dssp HHSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHH
T ss_pred cccccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHHh
Confidence 0 1211 1100 01222
Q ss_pred CCCC-ccCCCCcee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 382 ASRP-WDINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 382 ~~rp-Fd~~adG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
.+|| ||. +|++ ++||+++|||+++++|+++|+++|++|+|++.++|..+ ..+.+...+++++|+
T Consensus 236 ~~rpif~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~-----~~~~~~~~a~~~al~ 307 (401)
T 1ulq_A 236 ALRPVFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPR-----IMGIGPVPATRKALE 307 (401)
T ss_dssp HSCBSSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCGG-----GGGGTHHHHHHHHHH
T ss_pred hCCCccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCCcc-----ccchhHHHHHHHHHH
Confidence 3467 875 7988 79999999999999999999999999999999988533 334555677777663
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-20 Score=191.43 Aligned_cols=180 Identities=20% Similarity=0.247 Sum_probs=135.8
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+++++++||+|+|++++ +++ +|++|+...+. .....+.++++.+|
T Consensus 30 ~~L~~~A~~~Al~~agl~~~---~Id----~v~~g~~~~~~-------------------------~~~~~a~~i~~~lG 77 (394)
T 3ss6_A 30 VELAVPVLQEAVKRGGVEPH---EVD----EVILGHCIQRT-------------------------DEANTARTAALAAG 77 (394)
T ss_dssp HHHHHHHHHHHHHHTTCCGG---GCC----EEEEECSSCCG-------------------------GGCSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHh---HCC----EEEEEEccCCC-------------------------ccchHHHHHHHHcC
Confidence 46999999999999999986 444 78888764321 11235788999999
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhh-------------------------
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA------------------------- 368 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~------------------------- 368 (454)
+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..........+
T Consensus 78 l~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (394)
T 3ss6_A 78 FPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHI 157 (394)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTCC
T ss_pred CCCCceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCcccccccccccccccccc
Confidence 9 5899999999999999999999999999999999999998654221100000
Q ss_pred -hhh---------------------hhcc---------------------------cCCCCCCCCC-------------c
Q 012867 369 -CRA---------------------LSQR---------------------------NNDPTKASRP-------------W 386 (454)
Q Consensus 369 -~~~---------------------Ls~~---------------------------~~~p~~~~rp-------------F 386 (454)
++. -++. ..+|++.+|+ |
T Consensus 158 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pvf 237 (394)
T 3ss6_A 158 MMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAF 237 (394)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCcc
Confidence 000 0000 0246777876 7
Q ss_pred cCC-----CCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 387 DIN-----RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 387 d~~-----adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+.+ .|+..++||++++||+++++|+++|++++++|+|+++++ +.|++.+.+...+++++|+
T Consensus 238 ~~~g~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~ 303 (394)
T 3ss6_A 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAG-----VDPKIMGIGPAPAIRKGLE 303 (394)
T ss_dssp STTCCCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHH
T ss_pred CCCCceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEec-----CCCccchHHHHHHHHHHHH
Confidence 642 567778999999999999999999999999999999986 3455666666777777763
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-20 Score=193.86 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=133.8
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
.+|+++++++||+|+|++++ .++ +||+|+..+++. ..+..+.++++.+|
T Consensus 56 ~~La~~Aa~~AL~dAGl~~~---~Id----~vi~g~~~~~~~------------------------~~~~~a~~va~~lG 104 (442)
T 2wu9_A 56 DDLLAPVLRALIEKTNLNPS---EVG----DIVVGTVLAPGS------------------------QRASECRMAAFYAG 104 (442)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----CEEEECCSSBHH------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeecCccC------------------------CCChHHHHHHHHcC
Confidence 46899999999999999876 344 799998754321 01235789999999
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee-eec--------cc--chh-----hhhhh-----
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG--------LG--GFV-----ACRAL----- 372 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~-p~~--------~~--~f~-----~~~~L----- 372 (454)
+ ++|+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |.. +. +|. .++..
T Consensus 105 l~~~~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~~ 184 (442)
T 2wu9_A 105 FPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVA 184 (442)
T ss_dssp CCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHHH
T ss_pred CCCCceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHHH
Confidence 9 8999999999999999999999999999999999999997643 210 00 110 11110
Q ss_pred ----------------hcc-----------c----------------------CCCCC------------CCCC-ccCCC
Q 012867 373 ----------------SQR-----------N----------------------NDPTK------------ASRP-WDINR 390 (454)
Q Consensus 373 ----------------s~~-----------~----------------------~~p~~------------~~rp-Fd~~a 390 (454)
++. . .+.|+ .+|| ||.
T Consensus 185 ~~~gisre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~-- 262 (442)
T 2wu9_A 185 QRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK-- 262 (442)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT--
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC--
Confidence 000 0 01122 3456 875
Q ss_pred Ccee-------eecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 391 DGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 391 dG~v-------~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
+|++ ++||+++|||++++.|+++|++++++|+|++.++|. |+..+.+...+|+++|+
T Consensus 263 ~G~vt~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~A~~~Al~ 326 (442)
T 2wu9_A 263 DGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVD-----PAIMGIGPAVAIPAAVK 326 (442)
T ss_dssp TCCCCGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHH
T ss_pred CCCeechhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecCC-----chhcchHHHHHHHHHHH
Confidence 7998 699999999999999999999999999999999883 44445566777777763
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-21 Score=188.46 Aligned_cols=188 Identities=14% Similarity=0.185 Sum_probs=132.4
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhh-hhhhHHHHHHHHhc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTAG 243 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a-~~mdp~~rl~l~aa 243 (454)
++.|+|+|+.+|.. .+.+++++.+..- +.|- . ...| |..+.. ...++..+|+++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~~~-------~~~i----~-~~~G----------i~~r~~~~~~~~~~~l~~~a~ 59 (317)
T 1hnj_A 2 YTKIIGTGSYLPEQVRTNADLEKMVDTS-------DEWI----V-TRTG----------IRERHIAAPNETVSTMGFEAA 59 (317)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHTTSSCC-------HHHH----H-HHHC----------CCEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEEEEeCCCceecHHHHHHHhCCC-------HHHH----H-HHhC----------ceEEEecCCCCCHHHHHHHHH
Confidence 58999999999998 5677777654210 1110 0 0000 111211 13456889999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-CCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-Gps~t 322 (454)
++||+|+|++++ +++ +|++|+...++ .....+.+|++.||++ +|+++
T Consensus 60 ~~al~~ag~~~~---~id----~vi~g~~~~~~-------------------------~~~~~a~~v~~~lgl~~~~~~~ 107 (317)
T 1hnj_A 60 TRAIEMAGIEKD---QIG----LIVVATTSATH-------------------------AFPSAACQIQSMLGIKGCPAFD 107 (317)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSCCSC-------------------------SSSCHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCCcHHHHHHHHhCCCCCeEEe
Confidence 999999999875 333 68888864221 1124689999999998 89999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|++.||+.|+++|++|++|.+||+|+|.+. +. + . |+...+|+++|||++++
T Consensus 108 v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s-~~----------~-----------~-~~d~~~~~~~GdGA~A~ 164 (317)
T 1hnj_A 108 VAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLA-RT----------C-----------D-PTDRGTIIIFGDGAGAA 164 (317)
T ss_dssp ECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHH-HH----------S-----------C-TTCHHHHTTBCCEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhc-cc----------C-----------C-chhcccceeeccccEEE
Confidence 999999999999999999999999999999999721 10 1 1 22234599999999999
Q ss_pred ehHHhHHHhhccceeeeeecC-cceeccccccCC
Q 012867 403 LLEELEHAKKRGAKIYAEFRG-GSFTSDAYHMTE 435 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~I~G-~a~~~Dg~~~t~ 435 (454)
|||+.++ ..||+++.+ .+...|..+++.
T Consensus 165 vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~ 193 (317)
T 1hnj_A 165 VLAASEE-----PGIISTHLHADGSYGELLTLPN 193 (317)
T ss_dssp EEEEESS-----CSEEEEEEEECGGGGGGEECCC
T ss_pred EEEecCC-----CceeeEEEEEcCCCCCeEEECC
Confidence 9997642 358887755 344445555443
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-20 Score=188.38 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=132.2
Q ss_pred ccceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhh-hhhhHHHHHHH
Q 012867 163 KQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLL 240 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a-~~mdp~~rl~l 240 (454)
.+.++.|+|+|+.+|.. .+.+++|+.+... +.|-. ...| |..+.. ...++..+|++
T Consensus 8 ~~~~~~I~gig~~~P~~~~~~~~~~~~~~~~-------~~~i~-----~~~G----------i~~R~~~~~~~~~~~la~ 65 (339)
T 1mzj_A 8 ERRFSRVLGVGSYRPRREVSNKEVCTWIDST-------EEWIE-----TRTG----------IRSRRIAEPDETIQVMGV 65 (339)
T ss_dssp CCCEEEEEEEEEECCSCEEEHHHHTTTSSCC-------HHHHH-----HHHC----------CSEEECCCTTCCHHHHHH
T ss_pred ccCceEEEEEEEeCCCccccHHHHHHHhCCC-------HHHHH-----HhcC----------ceEEEEeCCCCCHHHHHH
Confidence 45689999999999998 6777888765321 11100 0000 112211 12356789999
Q ss_pred HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-CC
Q 012867 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GP 319 (454)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-Gp 319 (454)
+++++||+|+|++++ +++ +|++|+..+++. . ...+.+|++.||++ +|
T Consensus 66 ~Aa~~al~~ag~~~~---~id----~vi~gt~~~~~~--------------------~-----p~~a~~v~~~lgl~~~~ 113 (339)
T 1mzj_A 66 AASRRALEHAGVDPA---EID----LVVVSTMTNFVH--------------------T-----PPLSVAIAHELGADNAG 113 (339)
T ss_dssp HHHHHHHHHHTCCGG---GCC----EEEEECSCCCCC--------------------S-----SCHHHHHHHHHTCTTCE
T ss_pred HHHHHHHHHcCCCHH---HCC----EEEEEecCCCCC--------------------C-----ChHHHHHHHHhCCCCcc
Confidence 999999999999875 333 788898754321 1 12578999999998 79
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+ ++. +. ++...+|+++|||+
T Consensus 114 ~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~-s~~----------~~------------~~d~~~~~~~GdGA 170 (339)
T 1mzj_A 114 GFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TDV----------ID------------LADRSLSFLFGDGA 170 (339)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GGG----------SC------------SSCTTTTTTBCEEE
T ss_pred EEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc----------cC------------ccccccceEeccCc
Confidence 99999999999999999999999999999999999973 221 11 12346799999999
Q ss_pred eeeehHHhHHHhhccceeeeee-cCcceecccccc
Q 012867 400 GVLLLEELEHAKKRGAKIYAEF-RGGSFTSDAYHM 433 (454)
Q Consensus 400 aalvLe~l~~A~~~G~~i~a~I-~G~a~~~Dg~~~ 433 (454)
+++||++.+. +.|+++. .+.+...|..++
T Consensus 171 ~A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~ 200 (339)
T 1mzj_A 171 GAAVVGPSDV-----PGIGPVVRGIDGTGLGSLHM 200 (339)
T ss_dssp EEEEEEEESS-----CCBCCCEEEECGGGGGGEEE
T ss_pred eEEEEEecCC-----CCeEEEEEEEcCCCCCeEEe
Confidence 9999997642 3455542 333333344444
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=185.67 Aligned_cols=180 Identities=21% Similarity=0.224 Sum_probs=134.3
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+++++++||+|+|++++ +++ +|++|+..+++ .....+.++++.+|
T Consensus 32 ~~L~~~A~~~AL~~agl~~~---dId----~vi~g~~~~~~-------------------------~~~~~a~~v~~~lG 79 (396)
T 4dd5_A 32 VELGVTAAKEAIKRANITPD---MID----ESLLGGVLTAG-------------------------LGQNIARQIALGAG 79 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCGG---GCC----EEEEECSCCTT-------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeecCCC-------------------------CCchHHHHHHHHcC
Confidence 46899999999999999986 444 78998864322 11245789999999
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhh-------------------------
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA------------------------- 368 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~------------------------- 368 (454)
+ .+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..........+
T Consensus 80 l~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (396)
T 4dd5_A 80 IPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNN 159 (396)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETTTT
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 5899999999999999999999999999999999999998654221100000
Q ss_pred --hhh---------------------hhcc---------------------------cCCCCCCCCC-------------
Q 012867 369 --CRA---------------------LSQR---------------------------NNDPTKASRP------------- 385 (454)
Q Consensus 369 --~~~---------------------Ls~~---------------------------~~~p~~~~rp------------- 385 (454)
+++ .++. ..+++..+|+
T Consensus 160 ~~~~~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~~v 239 (396)
T 4dd5_A 160 YHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPA 239 (396)
T ss_dssp EEHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCCBS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCCCc
Confidence 000 0000 0134555554
Q ss_pred ccC-----CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 386 WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 386 Fd~-----~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|+. ..|...++||++++||+++++|+++|+++|++|+|++++++ .|++.+.++..+++++|+
T Consensus 240 ~~p~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~ 306 (396)
T 4dd5_A 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGV-----DPKIMGYGPVPATKKALE 306 (396)
T ss_dssp SSTTCSCBTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHH
T ss_pred cCCCCCeecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecC-----CCCcccHHHHHHHHHHHH
Confidence 542 24566789999999999999999999999999999999886 456666677788877763
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-19 Score=184.08 Aligned_cols=180 Identities=21% Similarity=0.256 Sum_probs=134.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+++++++||+|+|++++ +++ +|++|+..... .....+.++++.+|
T Consensus 30 ~~L~~~a~~~Al~~agi~~~---~Id----~v~~g~~~~~~-------------------------~~~~~a~~~~~~lG 77 (395)
T 4e1l_A 30 VQLGTIAVKEAISRVGLNLS---EID----EVIIGNVLQTG-------------------------LGQNVARQIAINAG 77 (395)
T ss_dssp HHHHHHHHHHHHHHTTCCGG---GCC----EEEEECCCCSS-------------------------TTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC-------------------------CcchHHHHHHHHcC
Confidence 46999999999999999986 444 78888764221 11235788999999
Q ss_pred C--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeeccc---------------------ch------
Q 012867 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG---------------------GF------ 366 (454)
Q Consensus 316 l--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~---------------------~f------ 366 (454)
+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+....... ++
T Consensus 78 l~~~~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (395)
T 4e1l_A 78 IPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQ 157 (395)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETTH
T ss_pred CCCCceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhccccccccccc
Confidence 9 689999999999999999999999999999999999998765411100 00
Q ss_pred hhhhh---------------------hhcc----------------------------cCCCCCCCCC------------
Q 012867 367 VACRA---------------------LSQR----------------------------NNDPTKASRP------------ 385 (454)
Q Consensus 367 ~~~~~---------------------Ls~~----------------------------~~~p~~~~rp------------ 385 (454)
..++. .++. -.++++.+|+
T Consensus 158 ~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~~ 237 (395)
T 4e1l_A 158 YHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKP 237 (395)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCCB
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCCC
Confidence 00000 0000 0135666664
Q ss_pred -ccC-----CCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 386 -WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 386 -Fd~-----~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
|+. ..|...++||++++||+++++|+++|++++++|+|++++++ .|++.+.++..+++++|+
T Consensus 238 v~~~~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~ai~~al~ 305 (395)
T 4e1l_A 238 AFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGV-----EPEVMGTGPIPATRKALK 305 (395)
T ss_dssp SSSTTCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGTTCTHHHHHHHHHH
T ss_pred ccCCCCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccC-----CCCcchHHHHHHHHHHHH
Confidence 553 24677789999999999999999999999999999999885 455566667778887774
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-20 Score=181.55 Aligned_cols=186 Identities=17% Similarity=0.252 Sum_probs=130.9
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
++.|+|+|+.+|.. .+.+++++.+... +.| +. ...| +....+..+ ++..+|++++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~~~-------~~~----i~-~~~G----i~~r~~~~~------~~~~~l~~~a~~ 59 (309)
T 2ebd_A 2 GTKIIGTGVYLPKNVLTNFDLEKIVDTS-------DEW----IT-TRTG----IKERRIAKE------ETITYMATQAAK 59 (309)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHTTSSCC-------HHH----HH-HHHC----CCEEEECSS------CCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCceEcHHHHHHHcCCC-------HHH----HH-HHhC----ceeeeecCC------CCHHHHHHHHHH
Confidence 47999999999998 5667776554210 000 00 0000 000011111 567899999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~tv 323 (454)
+||+|+|++++ +++ +|++|+..+++ .. ...+.+|++.+|++| |+++|
T Consensus 60 ~al~~ag~~~~---~id----~v~~~~~~~~~------------------------~~-~~~a~~v~~~lgl~~~~~~~v 107 (309)
T 2ebd_A 60 EALREANLSPE---ELD----LIILATLTPQK------------------------RF-PSTACLVQAQLKAKGVYAFDI 107 (309)
T ss_dssp HHHHHHTCCGG---GCS----EEEEECSSCSS------------------------SS-SCHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC------------------------CC-CcHHHHHHHHhCCCCceEEec
Confidence 99999999875 333 79999874321 01 125789999999999 99999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+++|+|++.||+.|+++|++|++|.+||+|+|.+. + .+ . |+...+|+++|||++++|
T Consensus 108 ~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~s-~----------~~-----------~-~~~~~~~~~~gdGaaA~v 164 (309)
T 2ebd_A 108 SAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLS-E----------AV-----------D-WEDRSTCVLFGDGAGAVV 164 (309)
T ss_dssp ECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGG-G----------TC-----------C-TTCTTTTTTBCEEEEEEE
T ss_pred CccchHHHHHHHHHHHHHHCCCCCEEEEEEecccc-c----------cc-----------C-ccchhhccccccccEEEE
Confidence 99999999999999999999999999999999731 1 01 1 334568999999999999
Q ss_pred hHHhHHHhhccceeeeeecCcceeccc---cccCCC
Q 012867 404 LEELEHAKKRGAKIYAEFRGGSFTSDA---YHMTEP 436 (454)
Q Consensus 404 Le~l~~A~~~G~~i~a~I~G~a~~~Dg---~~~t~P 436 (454)
|++.+++ ..|++++ .++|+ .+++.|
T Consensus 165 L~~~~~~----~~i~~~~----~~~~g~~~~~~~~p 192 (309)
T 2ebd_A 165 VTRSEDK----SDILATR----MYAEGSLEELLHAD 192 (309)
T ss_dssp EEECSSS----CEEEEEE----EEECGGGGGGEEEC
T ss_pred EEecCCC----CceeEEE----EEecCCccceeEeC
Confidence 9987553 2355544 44566 356666
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-20 Score=183.67 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=131.1
Q ss_pred EEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchh-hhhhhHHHHHHHHhcc
Q 012867 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKL-SKRMDKFMLYLLTAGK 244 (454)
Q Consensus 167 IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~-a~~mdp~~rl~l~aa~ 244 (454)
+.|+|+|..+|.. .+.+++++.+... +.|- . ...| |..+. ...-++..+|++++++
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~-------~~~i----~-~~~G----------i~~r~~~~~~~~~~~la~~a~~ 59 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDTS-------DEWI----V-TRTG----------IKERRVAAEDEYTSDLAFKAVE 59 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSCC-------HHHH----H-HHTC----------CCEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEEEEECCCceecHHHHHHHhCCC-------HHHH----H-HhcC----------ceEEeecCCCCCHHHHHHHHHH
Confidence 4799999999988 5677777654211 0100 0 0000 11111 1112457789999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcCCCccee
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv~ 324 (454)
+||+|+|++++ +++ +|++|+...++ .. ...+.+++..+|+++|+++|+
T Consensus 60 ~al~~ag~~~~---~id----~vi~~~~~~~~--------------------~~-----~~~a~~v~~~lgl~~~~~~v~ 107 (322)
T 1ub7_A 60 DLLRRHPGALE---GVD----AVIVATNTPDA--------------------LF-----PDTAALVQARFGLKAFAYDLL 107 (322)
T ss_dssp HHHHHSTTTTT---TEE----EEEEECSSCSE--------------------EE-----SCHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CC-----CcHHHHHHHHhCCCCEEEeeC
Confidence 99999999875 332 68888764211 11 125789999999999999999
Q ss_pred ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeeeh
Q 012867 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (454)
Q Consensus 325 tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalvL 404 (454)
++|+|++.||+.|+++|++|++|.+||+|+|.+ ++. ..||| +++|+++|||++++||
T Consensus 108 ~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~---------------------~~~~d-~~~~~~~GdGA~A~vL 164 (322)
T 1ub7_A 108 AGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL-SKI---------------------IDWND-RATAVLFGDGGGAAVV 164 (322)
T ss_dssp CSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGT---------------------SCTTC-HHHHTTBCCEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEEechh-ccc---------------------cChhh-cccceeeccccEEEEE
Confidence 999999999999999999999999999999972 221 12444 5689999999999999
Q ss_pred HHhHHHhhccceeeeee-cCcceeccccccC
Q 012867 405 EELEHAKKRGAKIYAEF-RGGSFTSDAYHMT 434 (454)
Q Consensus 405 e~l~~A~~~G~~i~a~I-~G~a~~~Dg~~~t 434 (454)
++.++ +..|++++ .+.+...|..+++
T Consensus 165 ~~~~~----~~~i~~~~~~~~g~~~~~~~~~ 191 (322)
T 1ub7_A 165 GKVRE----GYGFRSFVLGADGTGAKELYHA 191 (322)
T ss_dssp ECCCT----TCEEEEEEEEECGGGCTTEEEE
T ss_pred EecCC----CCceeEEEEEEecCCCCeEEeC
Confidence 97643 45677755 4455555555543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-19 Score=203.91 Aligned_cols=224 Identities=11% Similarity=0.045 Sum_probs=159.9
Q ss_pred ccceEEEecccccccCC-------------CCchhHHhhh------hccccCCcccccccCCCCcccccccccccccCcc
Q 012867 163 KQKRVVVTGMGLVSPLG-------------HEPDVFYNNL------LEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g-------------~~~~~~w~~L------~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~f 223 (454)
.+.++.|+|+|..+|.+ .+.+++|+.+ ..++++|.+...++.+.+... .|++..+
T Consensus 600 ~~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~~------~~~~~~~ 673 (979)
T 3tsy_A 600 AKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEE------HPNIGAY 673 (979)
T ss_dssp CCSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHH------CHHHHSS
T ss_pred ccCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhhc------Ccccccc
Confidence 35689999999999998 6777788777 667788877544433221111 2333233
Q ss_pred ----ccchhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceecc
Q 012867 224 ----VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVP 299 (454)
Q Consensus 224 ----i~~~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 299 (454)
+..++.+.++....|+++|+++||+++|++++ +++ .|+++++.+ +
T Consensus 674 ~~~~~~~r~~~~~~~~~~la~~Aa~~AL~~agl~~~---dId----~ii~~t~~~---------------------~--- 722 (979)
T 3tsy_A 674 MAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKS---KIT----HLVFCTTSG---------------------V--- 722 (979)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSC---------------------C---
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HCC----EEEEEeeCC---------------------C---
Confidence 33444555556777999999999999999976 333 466666321 1
Q ss_pred ccccccchhHHhhhccCcCCC---cceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhccc
Q 012867 300 FATTNMGSAMLAMDLGWMGPN---YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376 (454)
Q Consensus 300 ~~~~~~~a~~is~~~gl~Gps---~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~ 376 (454)
.....+.+|+..||++++. +.++++|+|++.||..|.++|++|.++.|||+|+|.+....
T Consensus 723 --~~p~~a~~v~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~--------------- 785 (979)
T 3tsy_A 723 --EMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTF--------------- 785 (979)
T ss_dssp --CSSCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTC---------------
T ss_pred --CCCcHHHHHHHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhe---------------
Confidence 1124688999999999765 89999999999999999999999999999999999721100
Q ss_pred CCCCCCCCCccCCCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcc
Q 012867 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDI 442 (454)
Q Consensus 377 ~~p~~~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g 442 (454)
.+...+.++...+++++|||||++||++.+++..++..++....++....+..+.+.+.+.+.+
T Consensus 786 --~~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (979)
T 3tsy_A 786 --RGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVG 849 (979)
T ss_dssp --CCCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTE
T ss_pred --eCCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCc
Confidence 1112233444446789999999999998877766778888888888777777766665554443
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-18 Score=177.25 Aligned_cols=182 Identities=15% Similarity=0.088 Sum_probs=123.2
Q ss_pred HHHHHHHhcchhhhc-CCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 235 FMLYLLTAGKKALAD-GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 235 ~~rl~l~aa~eALed-AG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
.+.|+++++++||+| +|++++ +++ +|++|+..... .....++.++++.
T Consensus 32 ~~~L~~~A~~~AL~~~AGl~~~---dId----~vi~g~~~~~~------------------------~~~~~~a~~va~~ 80 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDLDET---LIS----DMILGVVSPVG------------------------DQGGDIARTAVLA 80 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTCCGG---GEE----EEEEECC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcCHH---HCC----EEEEEecCccc------------------------cccCcHHHHHHHH
Confidence 456899999999999 999986 444 78888753211 0012357899999
Q ss_pred ccC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecc---------------cchhhhhh-----
Q 012867 314 LGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL---------------GGFVACRA----- 371 (454)
Q Consensus 314 ~gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~---------------~~f~~~~~----- 371 (454)
+|+ .+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+...... ..+..++.
T Consensus 81 lGlp~~~pa~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~~ 160 (407)
T 3svk_A 81 AGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADLI 160 (407)
T ss_dssp TTCCTTCEEEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHHH
T ss_pred cCCCCCCceEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHHH
Confidence 999 68999999999999999999999999999999999999986642110 00001111
Q ss_pred ----------------hhcc-------------------------cCCCCCCCCC-------------ccCC--------
Q 012867 372 ----------------LSQR-------------------------NNDPTKASRP-------------WDIN-------- 389 (454)
Q Consensus 372 ----------------Ls~~-------------------------~~~p~~~~rp-------------Fd~~-------- 389 (454)
.++. ..+|+..+|+ |+..
T Consensus 161 a~~~~i~re~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~~ 240 (407)
T 3svk_A 161 ATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDD 240 (407)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC----------
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCccccccc
Confidence 0000 0236667775 5532
Q ss_pred ------------------CCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 390 ------------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 390 ------------------adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
.|...++||++++||+++++|+++|++++++|+|++.+++. |...+.+...+++++|
T Consensus 241 ~~~~~~~~~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al 315 (407)
T 3svk_A 241 VALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSD-----PVIMLTGPTPATRKVL 315 (407)
T ss_dssp ---CTTTTCSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC-----------CCCTHHHHHHHHH
T ss_pred cccccccccccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEeccC-----CccccHHHHHHHHHHH
Confidence 35556999999999999999999999999999999998874 3333445566777666
Q ss_pred c
Q 012867 452 C 452 (454)
Q Consensus 452 ~ 452 (454)
+
T Consensus 316 ~ 316 (407)
T 3svk_A 316 D 316 (407)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-19 Score=178.61 Aligned_cols=205 Identities=13% Similarity=0.080 Sum_probs=142.0
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccccCCcccccc-----cCCCCcccc-cccccccccCcc-ccchhhhhh----
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETF-----DCTSFPTKI-AAEIKSFSTDGW-VAPKLSKRM---- 232 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~-----~~~~~~~~~-~g~i~~fd~~~f-i~~~~a~~m---- 232 (454)
.+|.|+|+|+.+|.. .+.+++|+.+....+.-.+..+| ...+...+. ...-..||+.+| +++++...+
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDVNNQF 91 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHHHHHHHH
Confidence 468999999999998 67899999875432110000001 111111111 100024677777 677777777
Q ss_pred -hHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHh
Q 012867 233 -DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (454)
Q Consensus 233 -dp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is 311 (454)
++...|+++++++||+++|++++ +++ +|++|+..+ +. ....+.+|+
T Consensus 92 ~~~~~~la~~Aa~~al~~ag~~~~---~id----~vi~~t~~~---------------------~~-----~p~~a~~v~ 138 (374)
T 2h84_A 92 KKVVPDLAQQACLRALKDWGGDKG---DIT----HIVSVTSTG---------------------II-----IPDVNFKLI 138 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSC---------------------CC-----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeeCC---------------------CC-----CCcHHHHHH
Confidence 88999999999999999999876 333 677787631 10 112578999
Q ss_pred hhccCcC--CCccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC
Q 012867 312 MDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (454)
Q Consensus 312 ~~~gl~G--ps~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~ 388 (454)
+.||+++ |++.|. ++|+|++.||+.|+++|++|++|.+||+|+|.+. +. + ..|.|.
T Consensus 139 ~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~~----------~----------~~~~dr 197 (374)
T 2h84_A 139 DLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCS-LH----------F----------SNTDGG 197 (374)
T ss_dssp HHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCG-GG----------C----------CCSSSH
T ss_pred HHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-hh----------h----------cCCCCH
Confidence 9999998 889997 8999999999999999999999999999999831 11 0 012222
Q ss_pred C--CCceeeecCceeeehHHhHHHhhccceeeeeecCcce
Q 012867 389 N--RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF 426 (454)
Q Consensus 389 ~--adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~ 426 (454)
+ .+++++|||++++||++.+++..+ .++ +|.+++.
T Consensus 198 ~~~~~~~lfGDGA~A~vL~~~~~~~~~--~~~-~l~~~g~ 234 (374)
T 2h84_A 198 DQMVASSIFADGSAAYIIGCNPRIEET--PLY-EVMCSIN 234 (374)
T ss_dssp HHHHHHHHBCCEEEEEEEESSCCTTCC--CCE-EEEEEEE
T ss_pred HHHhhhhhhccCcEEEEEecCCCcccC--Cce-eEEeeee
Confidence 2 258999999999999987665322 344 5666544
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-19 Score=175.83 Aligned_cols=189 Identities=19% Similarity=0.298 Sum_probs=131.1
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchh-hhhhhHHHHHHHHhc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKL-SKRMDKFMLYLLTAG 243 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~-a~~mdp~~rl~l~aa 243 (454)
++.|+|+|...|.. .+.+++++.+... +.|- . ... . |..+. ...-++..+|+++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~~~-------~~~i----~-~~~----g------i~~r~~~~~~~~~~~l~~~a~ 59 (313)
T 1zow_A 2 NVGIKGFGAYAPEKIIDNAYFEQFLDTS-------DEWI----S-KMT----G------IKERHWADDDQDTSDLAYEAS 59 (313)
T ss_dssp CEEEEEEEEECCSCEEEGGGGGGTSSCC-------HHHH----H-HHH----C------CSEEECCCTTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCccccHHHHHHhcCCC-------HHHH----H-Hhh----C------ceEEEecCCCCCHHHHHHHHH
Confidence 47899999999998 5677777654211 0100 0 000 0 11111 111235678999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-CCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-Gps~t 322 (454)
++||+|+|++++ +++ +|++|+..+++. . ...+.+++..+|++ +|+++
T Consensus 60 ~~al~~ag~~~~---~id----~vi~~~~~~~~~--------------------~-----~~~a~~v~~~lgl~~~~~~~ 107 (313)
T 1zow_A 60 VKAIADAGIQPE---DID----MIIVATATGDMP--------------------F-----PTVANMLQERLGTGKVASMD 107 (313)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSSCSCS--------------------S-----SCHHHHHHHHHTCCSCCEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEcCCCCCC--------------------C-----CcHHHHHHHHhCCCCCcEEE
Confidence 999999999875 333 789988753221 1 12478999999998 69999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|++.||+.|+++|++|++|.+||+|+|.+. + ..+|||.. +|+++|||++++
T Consensus 108 v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~---------------------~~~~~d~~-~~~~~gdGa~A~ 164 (313)
T 1zow_A 108 QLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLS-K---------------------ITDLTDRS-TAVLFGDGAGAV 164 (313)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEGG-G---------------------TCCTTCHH-HHTTBCEEEEEE
T ss_pred ECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-c---------------------ccCccccc-ceeeeccceEEE
Confidence 999999999999999999999999999999999721 1 12355533 799999999999
Q ss_pred ehHHhHHHhhccceeeee-ecCcceeccccccCC
Q 012867 403 LLEELEHAKKRGAKIYAE-FRGGSFTSDAYHMTE 435 (454)
Q Consensus 403 vLe~l~~A~~~G~~i~a~-I~G~a~~~Dg~~~t~ 435 (454)
||++.++ +..|++. +.+.+...|..+++.
T Consensus 165 vl~~~~~----~~~i~~~~~~~~g~~~~~~~~~~ 194 (313)
T 1zow_A 165 IIGEVSE----GRGIISYEMGSDGTGGKHLYLDK 194 (313)
T ss_dssp EEEECST----TCEEEEEEEEECGGGGGGEEECT
T ss_pred EEEecCC----CCceeEEEEEEcCCCcCeEEecC
Confidence 9997653 3466663 555555455544443
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-18 Score=173.96 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=135.9
Q ss_pred EEEecccccccCC-CCchhHHhhhhccccCCcccccc-----cCCCCcccc-cccccccccCccccchhhhhhhHHHHHH
Q 012867 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETF-----DCTSFPTKI-AAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (454)
Q Consensus 167 IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~-----~~~~~~~~~-~g~i~~fd~~~fi~~~~a~~mdp~~rl~ 239 (454)
+.|+|+|+.+|.. .+.+++|+.+......... ++| ...+...+. ....+.|+..+-+++++....++...|+
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~~~~~~la 88 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRHTDHPQ-LPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRV 88 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTT-HHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhccChhh-HHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHHHHHHHHH
Confidence 7999999999998 7889999887554210000 001 111111111 1122334422226677777778889999
Q ss_pred HHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-
Q 012867 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG- 318 (454)
Q Consensus 240 l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G- 318 (454)
++++++||+++|++++ +++ .|++++..+ +.. ...+.+|++.||+++
T Consensus 89 ~~Aa~~aL~~agl~~~---~id----~vi~~t~~~---------------------~~~-----p~~a~~v~~~lGl~~~ 135 (382)
T 1u0m_A 89 PAVIQRALDDAELLAT---DID----VIIYVSCTG---------------------FMM-----PSLTAWLINEMGFDST 135 (382)
T ss_dssp HHHHHHHHHHHTCCGG---GCS----EEEEECSSS---------------------CCS-----SCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHhCCCHH---HCC----EEEEEecCC---------------------CCC-----CcHHHHHHHHhCCCCC
Confidence 9999999999999875 333 466666521 111 235789999999998
Q ss_pred -CCcce-eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC----c
Q 012867 319 -PNYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD----G 392 (454)
Q Consensus 319 -ps~tv-~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad----G 392 (454)
|+++| +++|+|++.||+.|+++|++|.+|.+||+|+|.+ ++ ..+|+|.+++ |
T Consensus 136 ~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~-s~---------------------~~~~~d~~~~~~~~~ 193 (382)
T 1u0m_A 136 TRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFC-SL---------------------CYQPTDLGVGSLLCN 193 (382)
T ss_dssp CEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEG-GG---------------------GCCTTCCSHHHHHHH
T ss_pred cceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEecc-ch---------------------hcCcccCCHHHhhcc
Confidence 88999 9999999999999999999999999999999972 11 1234554444 9
Q ss_pred eeeecCceeeehHHhHHHhhccceeeee
Q 012867 393 FVMGEGAGVLLLEELEHAKKRGAKIYAE 420 (454)
Q Consensus 393 ~v~GEGaaalvLe~l~~A~~~G~~i~a~ 420 (454)
+++|||++++||++.++ +|..|++.
T Consensus 194 ~lfGDGA~A~vL~~~~~---~g~~i~~~ 218 (382)
T 1u0m_A 194 GLFGDGIAAAVVRGRGG---TGVRLERN 218 (382)
T ss_dssp HHBCEEEEEEEEETTTC---SEEEEEEE
T ss_pred chhcCCcEEEEEeccCC---CCcEEEEe
Confidence 99999999999997643 45555543
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-18 Score=170.00 Aligned_cols=169 Identities=20% Similarity=0.302 Sum_probs=124.9
Q ss_pred ccceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCcc-ccchhh-hhhhHHHHHH
Q 012867 163 KQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW-VAPKLS-KRMDKFMLYL 239 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~f-i~~~~a-~~mdp~~rl~ 239 (454)
.|.++.|+|+|+.+|.. .+.+++|+.+... +.| +. ..+ |..+.. ...++..+|+
T Consensus 9 ~m~~~~I~g~g~~~P~~~~~~~~~~~~~~~~-------~~~------------i~----~~~gi~~r~~~~~~~~~~~la 65 (335)
T 1u6e_A 9 GARSVGLLSVGAYRPERVVTNDEICQHIDSS-------DEW------------IY----TRTGIKTRRFAADDESAASMA 65 (335)
T ss_dssp CCSCEEEEEEEEECCSEEEEHHHHTTSSSCC-------HHH------------HH----HHHCCSEEEECCTTCCHHHHH
T ss_pred CCCceEEEEEEEECCCceecHHHHHHHhCCC-------HHH------------HH----HhcCCceEeecCCCCCHHHHH
Confidence 36679999999999998 6677787754211 111 00 000 222221 1235678999
Q ss_pred HHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-C
Q 012867 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-G 318 (454)
Q Consensus 240 l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-G 318 (454)
++++++||+|+|++++ +++ +|++|+..+++. ....+.+|++.||++ +
T Consensus 66 ~~A~~~al~~ag~~~~---~id----~vi~~t~~~~~~-------------------------~~~~a~~v~~~lgl~~~ 113 (335)
T 1u6e_A 66 TEACRRALSNAGLSAA---DID----GVIVTTNTHFLQ-------------------------TPPAAPMVAASLGAKGI 113 (335)
T ss_dssp HHHHHHHHHHHTCCGG---GCC----EEEEECSCCCCS-------------------------SSCHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHcCCCHH---HCC----EEEEEcCCCCCC-------------------------CChHHHHHHHHhCCCCC
Confidence 9999999999999875 333 789998754321 113578999999998 6
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecC
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEG 398 (454)
|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+. + ..+||| ..+++++|||
T Consensus 114 ~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~---------------------~~~~~d-~~~~~~~gDG 170 (335)
T 1u6e_A 114 LGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLS-P---------------------TIDMYD-RGNCFIFADG 170 (335)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECG-G---------------------GCCTTC-TTTTTTBCEE
T ss_pred cEeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEcccc-c---------------------ccCccc-cccceEeccc
Confidence 9999999999999999999999999999999999999831 0 123454 3489999999
Q ss_pred ceeeehHHhHH
Q 012867 399 AGVLLLEELEH 409 (454)
Q Consensus 399 aaalvLe~l~~ 409 (454)
++++||++.++
T Consensus 171 A~A~vl~~~~~ 181 (335)
T 1u6e_A 171 AAAVVVGETPF 181 (335)
T ss_dssp EEEEEEEECSS
T ss_pred cEEEEEEecCC
Confidence 99999997653
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-18 Score=167.68 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=130.1
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
++.|+|+|+.+|.. .+.+++|+.+.... .|- . ...| |..+.....++..+|++++++
T Consensus 5 ~~~I~g~g~~~P~~~~~~~~~~~~~~~~~-------~~i----~-~~~G----------i~~R~~~~~~~~~~la~~Aa~ 62 (331)
T 2x3e_A 5 AAVVCGLGSYLPEAVLSNDMLAAELDTSD-------AWI----S-SRTG----------VRQRHIAGDLGSGDLALRAAS 62 (331)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHTTCCH-------HHH----H-HHHC----------CCEEECCTTCCHHHHHHHHHH
T ss_pred eeEEEEEEEECCCcEecHHHHHHHhCCCH-------HHH----H-HhhC----------ceEEEecCCCCHHHHHHHHHH
Confidence 68999999999998 67788887653211 110 0 0000 111111111667899999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-CCCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-Gps~tv 323 (454)
+||+++|+ + +++ .|++|+..+++ ..+ ..+.+|++.+|++ +|+++|
T Consensus 63 ~al~~ag~--~---~id----~vi~~t~~~~~--------------------~~p-----~~a~~v~~~lgl~~~~~~~v 108 (331)
T 2x3e_A 63 AALASAGL--E---RVD----AVVLATSTGDF--------------------CCP-----ATAPRVAARLGLVGALAFDL 108 (331)
T ss_dssp HHHHHHTC--S---CCS----EEEEECSSCSE--------------------EES-----CSHHHHHHHTTCTTSEEEEE
T ss_pred HHHHhCCc--c---cCC----EEEEEeCCCCC--------------------CCC-----hHHHHHHHHhCCCCCcEEEE
Confidence 99999998 2 333 67888764321 111 2578999999998 899999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+++|+|++.||+.|+++|++|++|.+||+|+|.+ ++. +. |+...+|+++|||++++|
T Consensus 109 ~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~~-s~~----------~~------------~~d~~~~~~~GdGA~A~v 165 (331)
T 2x3e_A 109 SAAATGFVYGLASVGSLISAGLADSALLVGVDTF-SHT----------LD------------PADRSTRALFGDGAGAVV 165 (331)
T ss_dssp ECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGG----------SC------------TTCHHHHHHBCCEEEEEE
T ss_pred cCcChHHHHHHHHHHHHHHcCCCCEEEEEEeecc-ccC----------CC------------ccccccceeeccccEEEE
Confidence 9999999999999999999999999999999973 221 11 122347999999999999
Q ss_pred hHHhHHHhhccceeeeeecCcceecccc---ccCCCC
Q 012867 404 LEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPH 437 (454)
Q Consensus 404 Le~l~~A~~~G~~i~a~I~G~a~~~Dg~---~~t~P~ 437 (454)
|++.++| ++..|++. ...+|+. +++.|.
T Consensus 166 L~~~~~a--~~~~i~~~----~~~~dg~~~~~~~~p~ 196 (331)
T 2x3e_A 166 LRAGDAE--EEGALLAF----DLGSDGHQFDLLMTPA 196 (331)
T ss_dssp EEEECTT--STTBEEEE----EEEECGGGTTSEEEEC
T ss_pred EEecCCC--CCCceEEE----EEEEcCCCCCeEEecC
Confidence 9987655 44556543 3455653 345443
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-17 Score=161.51 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=132.4
Q ss_pred CccceEEEecccccccCC-CCchhHHhhhhc-----cccCCcccccccCCCCcccccccccccccCccccchhhhhhhHH
Q 012867 162 MKQKRVVVTGMGLVSPLG-HEPDVFYNNLLE-----GVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKF 235 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g-~~~~~~w~~L~~-----G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~ 235 (454)
+....|.|+|+|...|.- .+.+++.+.+.. +.+ ...+. ...+...+. +..+. ...
T Consensus 8 m~~~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~-~~~i~--~~tGi~~R~-----------~~~~~-----~~~ 68 (345)
T 3s21_A 8 MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIK-TDVLG--DVAGIHARR-----------LWDQD-----VQA 68 (345)
T ss_dssp GSCSSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCC-CCHHH--HTTCCSEEE-----------ECSSC-----CCH
T ss_pred ceecceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCC-HHHHH--HhhCceeEE-----------ECCCC-----CCH
Confidence 445789999999999997 677777776522 110 00000 000111110 00111 124
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+++||+++|++++ +++ .|++|+...++ .....+.+|+..+|
T Consensus 69 ~~La~~Aa~~al~~ag~~~~---~Id----~vi~~t~~~~~-------------------------~~p~~a~~v~~~lG 116 (345)
T 3s21_A 69 SDAATQAARKALIDANIGIE---KIG----LLINTSVSRDY-------------------------LEPSTASIVSGNLG 116 (345)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEECCSCCSC-------------------------SSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCC-------------------------CCChHHHHHHHHhC
Confidence 57999999999999999986 333 57888763221 11235789999999
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
+. +|.++|+++|+|++.||+.|+++|++|+++.+||+|+|.+... ..+...++++ +++.|++||.+.+++
T Consensus 117 l~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~---~~~~~~~~~~-----~~~~~~~f~~~~~~~ 188 (345)
T 3s21_A 117 VSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLV---YEKTLERMTS-----PDVTEEEFRNELAAL 188 (345)
T ss_dssp CCTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHH---HHHHHHHHTC-----TTCCHHHHHHHHGGG
T ss_pred CCCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchh---hccccccccC-----Cccchhhhhhhccce
Confidence 95 7999999999999999999999999999999999999985432 1122223343 556789999999999
Q ss_pred eeecCceeeehHHhH
Q 012867 394 VMGEGAGVLLLEELE 408 (454)
Q Consensus 394 v~GEGaaalvLe~l~ 408 (454)
++|||++++||++.+
T Consensus 189 ~~GdGA~A~vl~~~~ 203 (345)
T 3s21_A 189 TLGCGAAAMVMARSE 203 (345)
T ss_dssp GBCCEEEEEEEEEGG
T ss_pred eeccceeEEEEecCC
Confidence 999999999999754
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-15 Score=149.53 Aligned_cols=172 Identities=17% Similarity=0.270 Sum_probs=120.5
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
+|.|+|+|+.+|.. .+.+++|+.+.+.. +..-+.|- ..+. + |.. ..+..+ -.....|+.+|++
T Consensus 11 ~v~I~g~g~~lP~~~v~~~~l~~~l~~~~--~~~~~~~i----~~rt-g-i~~---r~~~~~-----~~~~~~la~~Aa~ 74 (333)
T 4dfe_A 11 YSRVLGTGSYLPPNRVTNQDLAKRLAEQG--IETSDEWI----VART-G-IHA---RYFAEP-----DVTTSDLAFIASQ 74 (333)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHHHHC-----CCCCHHHH----HHHH-C-CSE---EEECCT-----TCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhcccc--CCCCHHHh----HHhc-C-ceE---EEEcCC-----CCCHHHHHHHHHH
Confidence 79999999999997 78899999875411 11101110 0000 0 000 000001 1246789999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC--cCCCcc
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MGPNYS 322 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl--~Gps~t 322 (454)
+||+++|++++ +++ .|++|+..+++. ....+.+|+..+|+ ++|+++
T Consensus 75 ~al~~ag~~~~---~Id----~vi~~t~~~~~~-------------------------~p~~a~~v~~~lgl~~~~~~~~ 122 (333)
T 4dfe_A 75 RAIEAADIDPQ---SID----LIIVATSTPDFV-------------------------FPSTACLLQNKLGIRNHGAAFD 122 (333)
T ss_dssp HHHHHHTCCGG---GCC----EEEEECSSCSSS-------------------------BSCHHHHHHHHTTCCSCCEEEE
T ss_pred HHHHHcCCCHH---HCC----EEEEEeCCCCCC-------------------------CCcHHHHHHHHhCCCCCCcEEE
Confidence 99999999986 333 688887643221 12347899999999 679999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+|++.||+.|+++|++|+++.+||+|+|.+... + -|+...+++++|||++++
T Consensus 123 v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~-----------~------------~~~d~~~~~lfGDGA~A~ 179 (333)
T 4dfe_A 123 VQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRI-----------L------------DFKDRTTCVLFGDGAGAV 179 (333)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGG-----------C------------CTTCTTTTTTBCEEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeeccccc-----------c------------CcccccceeeeccccEEE
Confidence 99999999999999999999999999999999983111 0 123344678999999999
Q ss_pred ehHHhH
Q 012867 403 LLEELE 408 (454)
Q Consensus 403 vLe~l~ 408 (454)
||++.+
T Consensus 180 vl~~~~ 185 (333)
T 4dfe_A 180 ILQASD 185 (333)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 999754
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=147.80 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=105.3
Q ss_pred hHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh
Q 012867 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (454)
Q Consensus 233 dp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~ 312 (454)
.....|+.+++++||+++|++++ +++ .|++|+..+ +. ....+.+|+.
T Consensus 111 ~~~~~la~~Aa~~aL~~agl~~~---~Id----~vi~~t~~~---------------------~~-----~p~~a~~v~~ 157 (393)
T 1ted_A 111 EHAVPLAVDVSKRALAGLPYRAA---EIG----LLVLATSTG---------------------FI-----APGVDVAIVK 157 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGG---GEE----EEEEEESSC---------------------CC-----SSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEeCC---------------------Cc-----cChHHHHHHH
Confidence 35678999999999999999875 332 466676532 10 1235789999
Q ss_pred hccCcCC--Ccce-eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCC
Q 012867 313 DLGWMGP--NYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (454)
Q Consensus 313 ~~gl~Gp--s~tv-~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ 389 (454)
.+|++++ .+.+ +++|+|++.||+.|+++|+.|.+|.+||+|+|.+. +. + . |+.+
T Consensus 158 ~lGl~~~~~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~----------~-----------~-~~~~ 214 (393)
T 1ted_A 158 ELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCS-VN----------A-----------V-FADD 214 (393)
T ss_dssp HHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECG-GG----------C-----------C-CCSS
T ss_pred HcCcCCCcceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-cc----------C-----------C-CCCC
Confidence 9999986 4777 89999999999999999999999999999999732 10 0 0 3445
Q ss_pred CC----ceeeecCceeeehHHhHHHhhccceeeeeecCccee--ccc
Q 012867 390 RD----GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT--SDA 430 (454)
Q Consensus 390 ad----G~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~--~Dg 430 (454)
++ |+++|||++++||++.+.+..+|. .+++|.+++.. .|+
T Consensus 215 r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~ 260 (393)
T 1ted_A 215 INDVVIHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNT 260 (393)
T ss_dssp HHHHHHHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTC
T ss_pred HHHhhhhhhhcCccEEEEEecCCCccccCc-ceeeeeccceEEcCCc
Confidence 54 899999999999998655433343 56677776544 555
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-14 Score=144.77 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=128.2
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccc-c-CCccc---ccc--cCCCCcccc--------cccccccccCcc-ccchh
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGV-S-GISEI---ETF--DCTSFPTKI--------AAEIKSFSTDGW-VAPKL 228 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~-s-~i~~~---~~~--~~~~~~~~~--------~g~i~~fd~~~f-i~~~~ 228 (454)
++.|+|+|...|.. .+.+++++.+.... + ...++ ..| ...+...+. ......||+.++ +..++
T Consensus 12 ~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~p~~~~~~~~~~~~r~ 91 (387)
T 3a5r_A 12 LATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLHVTEEILKENPNIAAYEATSLNVRH 91 (387)
T ss_dssp CEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECSCCHHHHHHCHHHHSSSSSCHHHHH
T ss_pred CcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEecChhhhccCcccccccCCCHHHHH
Confidence 58999999999998 56677777652211 0 00000 000 001111111 011223455544 66777
Q ss_pred hhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchh
Q 012867 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (454)
Q Consensus 229 a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~ 308 (454)
...+.....|+.+|+++||+++|++++ +++ .|++++..+ + .....+.
T Consensus 92 ~~~~~~~~~La~~Aa~~aL~~ag~~~~---~Id----~li~~t~~~-~-------------------------~~p~~a~ 138 (387)
T 3a5r_A 92 KMQVKGVAELGKEAALKAIKEWGQPKS---KIT----HLIVCCLAG-V-------------------------DMPGADY 138 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSC-C-------------------------EESCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCC-C-------------------------CCCcHHH
Confidence 777888899999999999999999875 333 567776531 0 1123578
Q ss_pred HHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCC
Q 012867 309 MLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRP 385 (454)
Q Consensus 309 ~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rp 385 (454)
+|+..+|+.++ .+.|+++|+|++.||..|.++|++|.++.+||+|+|.+. .. -..|
T Consensus 139 ~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s-~~--------------------~~~~ 197 (387)
T 3a5r_A 139 QLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTT-TC--------------------FRGP 197 (387)
T ss_dssp HHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCT-TT--------------------CCCC
T ss_pred HHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccc-hh--------------------hcCC
Confidence 99999999885 789999999999999999999999999999999999731 10 0123
Q ss_pred cc----CCCCceeeecCceeeehHHh
Q 012867 386 WD----INRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 386 Fd----~~adG~v~GEGaaalvLe~l 407 (454)
+| ...+++++||||+++||++.
T Consensus 198 ~d~~~~~~~~~~lfGDGA~A~vl~~~ 223 (387)
T 3a5r_A 198 SETHLDSMIGQAILGDGAAAVIVGAD 223 (387)
T ss_dssp CSSCCSSTTHHHHBCCEEEEEEEESS
T ss_pred CccchhhccccceeccceeEEEEecC
Confidence 33 23368999999999999864
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-14 Score=143.75 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=129.3
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccc--cCCccc---ccc--cCCCCcccccc---cccccccCcc-------cc
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGV--SGISEI---ETF--DCTSFPTKIAA---EIKSFSTDGW-------VA 225 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~--s~i~~~---~~~--~~~~~~~~~~g---~i~~fd~~~f-------i~ 225 (454)
+.++.|+|+|+..|.- .+.+++++.+.... +...++ ..| ...+...+... ++.+.++.+| +.
T Consensus 36 ~~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~~~ 115 (413)
T 1xes_A 36 DGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLD 115 (413)
T ss_dssp CSCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCCHH
T ss_pred CCCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCCHH
Confidence 3568999999999998 56777777653211 000000 000 01111111110 0001112211 23
Q ss_pred chhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceecccccccc
Q 012867 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNM 305 (454)
Q Consensus 226 ~~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 305 (454)
.+....++....|+.+|+++||+++|++++ +++ .|++|+..+ + ....
T Consensus 116 ~r~~~~~~~~~~La~~Aa~~AL~~agl~~~---~Id----~li~~t~~~---------------------~-----~~p~ 162 (413)
T 1xes_A 116 ARQAMLAMEVPRLAKEAAEKAIQEWGQSKS---GIT----HLIFCSTTT---------------------P-----DLPG 162 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESCC---------------------C-----EESC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEeCC---------------------C-----ccch
Confidence 455566678889999999999999999875 333 577787632 1 1113
Q ss_pred chhHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCC
Q 012867 306 GSAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKA 382 (454)
Q Consensus 306 ~a~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~ 382 (454)
.+.+|+..+|++++ .++|+.+|+|++.||..|.++|++|.+|.+||+|+|.+.. . | .. ++
T Consensus 163 ~a~~v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~-~----~-----~~-----~~-- 225 (413)
T 1xes_A 163 ADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAV-T----F-----RG-----PS-- 225 (413)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTT-T----C-----CC-----CC--
T ss_pred HHHHHHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhh-h----h-----cC-----CC--
Confidence 47899999999885 7899999999999999999999999999999999997321 0 0 11 22
Q ss_pred CCCccCCCCceeeecCceeeehHHhH
Q 012867 383 SRPWDINRDGFVMGEGAGVLLLEELE 408 (454)
Q Consensus 383 ~rpFd~~adG~v~GEGaaalvLe~l~ 408 (454)
.++|+...+++++||||+++||++.+
T Consensus 226 d~~~~~~~~~~lfGDGA~A~vl~~~~ 251 (413)
T 1xes_A 226 ETHLDSLVGQALFGDGASALIVGADP 251 (413)
T ss_dssp TTCHHHHHHHHHBCCEEEEEEEESSC
T ss_pred ccchhhcccceeEecccEEEEEecCC
Confidence 14666677899999999999998643
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-13 Score=135.67 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=93.1
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ .|++++...++. ....+.+|+..+
T Consensus 117 ~~~La~~Aa~~AL~~agi~~~---dId----~vi~~t~t~~~~-------------------------~p~~a~~v~~~L 164 (392)
T 3led_A 117 LAEMAVTAAEQAIERWGKPRE---RIG----AVLCACSNMQRA-------------------------YPAMAIEVQNAL 164 (392)
T ss_dssp HHHHHHHHHHHHHHHHCSCGG---GEE----EEEEESSCCSCS-------------------------BSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCCC-------------------------ccHHHHHHHHHh
Confidence 467999999999999999986 333 678887642221 112578899999
Q ss_pred cCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCcee
Q 012867 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (454)
Q Consensus 315 gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v 394 (454)
|++.|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+ |.. ..+.| ....++
T Consensus 165 Gl~~~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~---------------S~~-------~d~~d-r~t~~l 221 (392)
T 3led_A 165 GLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEIC---------------SGH-------LNFRD-RDSHFI 221 (392)
T ss_dssp TCCSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG---------------GGG-------CCTTC-TTTTTT
T ss_pred CCCCeEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhc---------------CCc-------CCcCc-ccCCcc
Confidence 9988999999999999999999999999999999999999972 210 01112 224688
Q ss_pred eecCceeeehHHhH
Q 012867 395 MGEGAGVLLLEELE 408 (454)
Q Consensus 395 ~GEGaaalvLe~l~ 408 (454)
+||||+++||++.+
T Consensus 222 FGDGA~A~vl~~~~ 235 (392)
T 3led_A 222 FGDVATAAIVERAD 235 (392)
T ss_dssp BCEEEEEEEEEEGG
T ss_pred cccccEEEEEEecC
Confidence 99999999998743
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-13 Score=142.15 Aligned_cols=195 Identities=15% Similarity=0.081 Sum_probs=117.3
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
.|+.+++++||+|+|+++++ ++.--.|++++.... .. ............++..++..+|+
T Consensus 44 dL~a~Ai~~AL~dAGl~p~~---Vd~vI~g~~~~~~~~----~~-------------~~~~~~~g~~~~~~~~va~~lGl 103 (520)
T 4egv_A 44 ELATEAAKAALHDCGADADT---VARAIDTVAGTRQFE----IS-------------GPASAPLGVSSNYPRSVARNIGA 103 (520)
T ss_dssp HHHHHHHHHHHHHTSSCHHH---HHHHCCEEEECCC-------------------------------CCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCcCHHH---cceEEEEEeeccccc----cc-------------chhhhhhccccCHHHHHHHHcCC
Confidence 37889999999999999874 332222333332210 00 01111222334567889999999
Q ss_pred cC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhh---------------------------
Q 012867 317 MG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA--------------------------- 368 (454)
Q Consensus 317 ~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~--------------------------- 368 (454)
.+ |.++++.+|+|++.+|++|++.|+.|++|++|+||+|.|.+...+.....
T Consensus 104 ~~~~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 183 (520)
T 4egv_A 104 DPAHAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDEYT 183 (520)
T ss_dssp CCSEEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC----------------------------------CTT
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchhHHHHH
Confidence 87 67788999999999999999999999999999999999754321110000
Q ss_pred --h-------------------------------hhhhc---c--cCCCCCCCC--------------------CccCCC
Q 012867 369 --C-------------------------------RALSQ---R--NNDPTKASR--------------------PWDINR 390 (454)
Q Consensus 369 --~-------------------------------~~Ls~---~--~~~p~~~~r--------------------pFd~~a 390 (454)
. ..+.. . ..+|+...| |+..-.
T Consensus 184 ~~~g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~np~a~~r~~~t~E~l~~l~p~~r~i~~p~~ta~ 263 (520)
T 4egv_A 184 IRHGLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAKNPYSSAPTERSVEELLTVTASNRMIVDPYPRLM 263 (520)
T ss_dssp GGGTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCTTSSSCCCCCHHHHHSCCSSSCEEETTEEGGG
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEecccccccCccccccCCCCHHHhcccCcccccccCCccccc
Confidence 0 00000 0 001211111 111112
Q ss_pred CceeeecCceeeehHHhHHHhhccceeeeeecCcceeccc--cccCCCCC-CCcceeccccccc
Q 012867 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDA--YHMTEPHP-DGDIMLGGVQDYH 451 (454)
Q Consensus 391 dG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg--~~~t~P~p-~g~g~~~a~~~~~ 451 (454)
|..-+.||++++||.+.+.|++.|.++++.|.+++.+... ..++.|+. .+.+...+++++|
T Consensus 264 nas~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al 327 (520)
T 4egv_A 264 VARDQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEAL 327 (520)
T ss_dssp CC--CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHH
T ss_pred ccCCCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHH
Confidence 3344689999999999999999999999999988877543 23344432 2445556666555
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-12 Score=130.42 Aligned_cols=166 Identities=16% Similarity=0.202 Sum_probs=114.2
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
..|.|+|+|...|.- .+.+++.+.+..-...|.+ + .+...+ .+..+.+ ...|+.+|+
T Consensus 3 ~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~--~---~Gi~~R-----------~~a~~~e------~~~La~~Aa 60 (321)
T 3il6_A 3 NYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHS--R---TGISER-----------RIVTQEN------TSDLCHQVA 60 (321)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHH--H---HSCSEE-----------ECCSSCC------HHHHHHHHH
T ss_pred CcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhh--h---cCceEE-----------EECCCCC------HHHHHHHHH
Confidence 468999999999997 5677776654211000000 0 000000 0111111 567999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc-CCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-Gps~t 322 (454)
++||+++|++++ +++ .|++|+...++ .....+.+++..+|++ .|.+.
T Consensus 61 ~~aL~~ag~~~~---~Id----~li~~t~~~~~-------------------------~~p~~a~~v~~~lGl~~~~~~~ 108 (321)
T 3il6_A 61 KQLLEKSGKQAS---EID----FILVATVTPDF-------------------------NMPSVACQVQGAIGATEAFAFD 108 (321)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSSCSC-------------------------SSSCHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEeCCCCc-------------------------CCCcHHHHHHHHcCCCCceEEE
Confidence 999999999876 333 67888764221 1123578999999997 58999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+.+|+|++.||..|.++|++|.++.+||+|+|.+. .. + . ++.....+++||||+++
T Consensus 109 v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s-~~----------~-----------~-~~dr~~~~lfGDGA~A~ 165 (321)
T 3il6_A 109 ISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETFS-KM----------L-----------D-WTDRSTAVLFGDGAAGV 165 (321)
T ss_dssp ECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECGG-GG----------S-----------C-TTCTTTGGGBCCEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-cc----------C-----------C-ccccccceeeccccEEE
Confidence 999999999999999999999999999999999831 10 1 0 11123467899999999
Q ss_pred ehHHh
Q 012867 403 LLEEL 407 (454)
Q Consensus 403 vLe~l 407 (454)
||++.
T Consensus 166 vl~~~ 170 (321)
T 3il6_A 166 LIEAA 170 (321)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99864
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-12 Score=131.82 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=102.2
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccc-eeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCG-VLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vG-V~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
...|+++|+.+||++ ++++ +|+ |++|+..+.. .....+..|+..
T Consensus 51 ~~~la~~Aa~~aL~~--~~~~--------~Id~li~~t~~~~~-------------------------~~p~~a~~v~~~ 95 (396)
T 1xpm_A 51 IVSMGANAAKDIITD--EDKK--------KIGMVIVATESAVD-------------------------AAKAAAVQIHNL 95 (396)
T ss_dssp HHHHHHHHHHTTCCH--HHHH--------HEEEEEEECSSCSB-------------------------SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCHH--------HCCEEEEEeCCCCC-------------------------CCCCHHHHHHHH
Confidence 456899999999987 5443 344 5667653221 112357899999
Q ss_pred ccCc--CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCC
Q 012867 314 LGWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (454)
Q Consensus 314 ~gl~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ad 391 (454)
+|++ .|++.|.++|+|++.||..|.++|++|.++.+||+|+|. +... ++ .++
T Consensus 96 lGl~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~--s~~~-----------------------~~-~~~ 149 (396)
T 1xpm_A 96 LGIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT--ARYG-----------------------LN-SGG 149 (396)
T ss_dssp TTCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE--ECCC-----------------------TT-CSS
T ss_pred hCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh--hccc-----------------------cC-CCC
Confidence 9997 499999999999999999999999999999999999995 2211 11 136
Q ss_pred ceeeecCceeeehHHhHHHhhccceeeeeecCcceec-cccccCCCCC
Q 012867 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS-DAYHMTEPHP 438 (454)
Q Consensus 392 G~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~-Dg~~~t~P~p 438 (454)
++++||||+++||++. ..|++...|.+... |.++++.|++
T Consensus 150 ~~~~GdGA~A~vl~~~-------~~i~~~~~~~g~~~~d~~~~~~p~~ 190 (396)
T 1xpm_A 150 EPTQGAGAVAMVIAHN-------PSILALNEDAVAYTEDVYDFWRPTG 190 (396)
T ss_dssp GGGCEEEEEEEEEEES-------CSSEEECSCCEEEECCCCSEECBTT
T ss_pred CcccccceEEEEeccC-------CceEEEEeccccccceEEEeeccCC
Confidence 8999999999999852 35778777766555 6666677765
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-12 Score=131.08 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=114.0
Q ss_pred CCccceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHH
Q 012867 161 HMKQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (454)
Q Consensus 161 ~~~~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~ 239 (454)
.+..+.|.|+|+|...|.- .+.+++.+.+. +.+ ...+ +...+...+. +..+. .....|+
T Consensus 25 ~~~~~~v~I~gig~~lP~~~v~n~~l~~~~~-~~~-~~~i--~~~tGI~~R~-----------~a~~~-----~~~~~La 84 (365)
T 3gwa_A 25 AAHPPRAAIADIAGHLPEQVLTNDVLAQLYP-DWP-AEKI--LAKTGIRERR-----------IAAPR-----ETAADLA 84 (365)
T ss_dssp ----CEEEEEEEEEECCSEEEEHHHHHHHCT-TCC-HHHH--HHHHCCCEEE-----------ECCTT-----CCHHHHH
T ss_pred cceeccEEEEEEEEeCCCcEEcHHHHHHHcc-CCC-HHHH--HHhcCccEEE-----------ECCCC-----CCHHHHH
Confidence 4556889999999999997 57777766551 100 0000 0000000000 01111 1245689
Q ss_pred HHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCc--
Q 012867 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-- 317 (454)
Q Consensus 240 l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~-- 317 (454)
.+|+++||+++|++++ +++ .|++++..+++ .....+.+++..+|+.
T Consensus 85 ~~Aa~~aL~~ag~~~~---~Id----~vi~~t~~~~~-------------------------~~p~~a~~v~~~lGl~~~ 132 (365)
T 3gwa_A 85 YEAARKLFAQGAVGAD---QVD----FVILCTQAPDY-------------------------VLPTSACMLQHRLGIPTH 132 (365)
T ss_dssp HHHHHHHHHTTSCCGG---GCC----EEEEEESSCSC-------------------------SBSCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCC-------------------------CCCcHHHHHHHHcCCCCC
Confidence 9999999999999986 333 67887753221 1112478899999997
Q ss_pred CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeec
Q 012867 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (454)
Q Consensus 318 Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GE 397 (454)
.|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . + -| ....+++||
T Consensus 133 ~~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~-----~------~d-r~~~~lfGD 189 (365)
T 3gwa_A 133 AGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYL-----------H-----P------LD-KSVRTLFGD 189 (365)
T ss_dssp SEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGS-----------C-----T------TC-HHHHTTBCC
T ss_pred ceEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccC-----------C-----c------cc-ccccccccc
Confidence 68999999999999999999999999999999999999832110 0 1 11 113567999
Q ss_pred CceeeehHHh
Q 012867 398 GAGVLLLEEL 407 (454)
Q Consensus 398 GaaalvLe~l 407 (454)
||+++||++.
T Consensus 190 GAaA~vl~~~ 199 (365)
T 3gwa_A 190 GASATAVIAE 199 (365)
T ss_dssp EEEEEEEEEE
T ss_pred eeEEEEEEec
Confidence 9999999863
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-12 Score=131.39 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=123.3
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhc--cccCCccc----cc-ccCCCCcccccccccc-c--ccC--cc----ccc
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLE--GVSGISEI----ET-FDCTSFPTKIAAEIKS-F--STD--GW----VAP 226 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~--G~s~i~~~----~~-~~~~~~~~~~~g~i~~-f--d~~--~f----i~~ 226 (454)
+.++.|+|+|...|.- .+.+++++.+.. ..+...++ .+ +...+...+....-++ + ++. .+ +..
T Consensus 14 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~ 93 (393)
T 3ov2_A 14 QGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSYKEASFDD 93 (393)
T ss_dssp SSCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHSGGGGSSSSCCHHH
T ss_pred CCCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeecChhhhccCcccccCCCCCHHH
Confidence 4679999999999998 677888876521 11111000 00 0011111111100000 0 010 11 233
Q ss_pred hhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccc
Q 012867 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306 (454)
Q Consensus 227 ~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (454)
+....++....|+.+|+++||+++|++++ +++ .|+++++.+ + .....
T Consensus 94 r~~~~~~~~~~La~~Aa~~aL~~ag~~~~---dId----~vi~~t~t~-~-------------------------~~p~~ 140 (393)
T 3ov2_A 94 RQDIVVEEIPRLAKEAAEKAIKEWGRPKS---EIT----HLVFCSISG-I-------------------------DMPGA 140 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCGG---GCC----EEEEEESSC-C-------------------------CBSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEeCC-C-------------------------CCCCH
Confidence 44445556788999999999999999976 333 577877632 1 11235
Q ss_pred hhHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCC
Q 012867 307 SAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383 (454)
Q Consensus 307 a~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~ 383 (454)
+.+|+..+|+.+. .+.|+.+|++++.||..|.++|++|.++.+||+|+|.+... .. +|+.
T Consensus 141 a~~v~~~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~----------~~-----~~~d-- 203 (393)
T 3ov2_A 141 DYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLS----------FR-----GPNE-- 203 (393)
T ss_dssp HHHHHHHHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGT----------CC-----CCCT--
T ss_pred HHHHHHHcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchh----------cc-----CCcc--
Confidence 7899999999875 68999999999999999999999999999999999983100 00 0111
Q ss_pred CCccCCCCceeeecCceeeehHHh
Q 012867 384 RPWDINRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 384 rpFd~~adG~v~GEGaaalvLe~l 407 (454)
+.++.....+++||||+++||++.
T Consensus 204 ~~~~~~~~~~lFGDGAaA~vl~~~ 227 (393)
T 3ov2_A 204 GDFEALAGQAGFGDGAGAVVVGAD 227 (393)
T ss_dssp TCHHHHHHHHHBCCEEEEEEEESS
T ss_pred cchhhhcccccccCccEEEEEEec
Confidence 111111356789999999999864
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-12 Score=129.27 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=123.2
Q ss_pred ccceEEEecccccccCC-CCchhHHhhhhc--cccCCccc----cc-ccCCCCcccccccccc-cc--cC--cc----cc
Q 012867 163 KQKRVVVTGMGLVSPLG-HEPDVFYNNLLE--GVSGISEI----ET-FDCTSFPTKIAAEIKS-FS--TD--GW----VA 225 (454)
Q Consensus 163 ~~~~IaItGmg~~~P~g-~~~~~~w~~L~~--G~s~i~~~----~~-~~~~~~~~~~~g~i~~-fd--~~--~f----i~ 225 (454)
.+.++.|+|+|...|.- .+.+++++.+.. +.+...++ .+ +...+...+....-++ ++ +. .+ +.
T Consensus 7 ~~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~ 86 (387)
T 3oit_A 7 ADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHHTEEMLSAHPEFVDRDAPSLD 86 (387)
T ss_dssp CSSCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESCCHHHHHHCGGGTCTTSCCHH
T ss_pred CCCCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeecCHHHhccCccccccCCCCHH
Confidence 35679999999999997 566677666521 11110000 00 0111111111110000 00 00 11 23
Q ss_pred chhhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceecccccccc
Q 012867 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNM 305 (454)
Q Consensus 226 ~~~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 305 (454)
.+....++....|+.+|+++||+++|++++ +++ .|++++..+ +.. ..
T Consensus 87 ~r~~~~~~~~~~La~~Aa~~AL~~ag~~~~---dId----~li~~t~t~---------------------~~~-----p~ 133 (387)
T 3oit_A 87 ARLDIAADAVPELAAEAAKKAIAEWGRPAA---DIT----HLVVTTNSG---------------------AHV-----PG 133 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGG---GCC----EEEEEESSC---------------------CEE-----SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeeCC---------------------CCc-----cc
Confidence 444455567888999999999999999876 333 677777632 111 23
Q ss_pred chhHHhhhccCcCC---CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCC
Q 012867 306 GSAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKA 382 (454)
Q Consensus 306 ~a~~is~~~gl~Gp---s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~ 382 (454)
.+.+|+..+|+.+. .+.+..+|++++.||..|.++|++|.++.+||+|+|.+.... . +++.
T Consensus 134 ~a~~v~~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~----------~-----~~~d- 197 (387)
T 3oit_A 134 VDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYF----------T-----GPDE- 197 (387)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGTC----------C-----CCCS-
T ss_pred HHHHHHHHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchhc----------c-----Cccc-
Confidence 57899999999874 689999999999999999999999999999999999831000 0 0110
Q ss_pred CCCccCCCCceeeecCceeeehHHh
Q 012867 383 SRPWDINRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 383 ~rpFd~~adG~v~GEGaaalvLe~l 407 (454)
+.++.....+++||||+++||++.
T Consensus 198 -~~~~~~~~~~lFGDGAaA~vl~~~ 221 (387)
T 3oit_A 198 -GCFRTLLVQGLFGDGAAAVIVGAD 221 (387)
T ss_dssp -SSCHHHHHHHHBCCEEEEEEEESS
T ss_pred -cchHhhhcccccccceEEEEEecC
Confidence 111111246789999999999864
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-12 Score=129.67 Aligned_cols=171 Identities=17% Similarity=0.209 Sum_probs=114.6
Q ss_pred CccceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHH
Q 012867 162 MKQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (454)
Q Consensus 162 ~~~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l 240 (454)
+.++.|.|+|+|...|.- .+.+++.+.+-. +-...+.+ ..+...+. +..+. .....|+.
T Consensus 12 m~~~~v~I~~ig~~lP~~~v~n~~l~~~~~~--~~~~~i~~--~tGI~~R~-----------~a~~~-----~~~~~La~ 71 (354)
T 4efi_A 12 LRTQGARIAGVVSCVPSKQVDNDYFVERFDA--SAVRDVVK--MIGVNRRR-----------WADAQ-----TSAGDLCR 71 (354)
T ss_dssp EEEESEEEEEEEEEECSCEEEGGGGTTTSCH--HHHHHHHH--HHCCSEEE-----------CCCTT-----CCHHHHHH
T ss_pred eEEcceEEEEEEEECCCcEEcHHHHHHHhCC--CcHHHHHH--hcCCeEEE-----------EcCCC-----CCHHHHHH
Confidence 456789999999999997 566666554311 00000000 00000000 00111 12456899
Q ss_pred HhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC--cC
Q 012867 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MG 318 (454)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl--~G 318 (454)
+|+++||+++|++++ +++ .|++|+..+++. ....+.+++..+|+ ..
T Consensus 72 ~Aa~~aL~~agi~~~---~Id----~vi~~t~~~~~~-------------------------~p~~a~~v~~~lGl~~~~ 119 (354)
T 4efi_A 72 KAGEKLLAGLGWQAD---SID----ALIFVSQTPNYR-------------------------LPATAFVLQAELDLPASC 119 (354)
T ss_dssp HHHHHHHHHHTCCGG---GCC----EEEEECSSCSCS-------------------------SSCHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHHcCCCHH---HCC----EEEEEeCCCCCC-------------------------CCcHHHHHHHHcCcCCCc
Confidence 999999999999986 333 688887643221 12357899999999 46
Q ss_pred CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecC
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEG 398 (454)
|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+ |.. .. ++.....+++|||
T Consensus 120 ~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~---------------s~~-------~~-~~d~~~~~lfGDG 176 (354)
T 4efi_A 120 LALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTI---------------SKM-------ID-PTDRSTSLLFGDA 176 (354)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG---------------GGG-------CC-TTCHHHHTTBCCE
T ss_pred cEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechh---------------ccc-------CC-ccccccccccccc
Confidence 899999999999999999999999999999999999983 210 00 1111235789999
Q ss_pred ceeeehHHh
Q 012867 399 AGVLLLEEL 407 (454)
Q Consensus 399 aaalvLe~l 407 (454)
|+++||++.
T Consensus 177 A~A~vl~~~ 185 (354)
T 4efi_A 177 GTMTALETS 185 (354)
T ss_dssp EEEEEEEEC
T ss_pred eeEEEEeec
Confidence 999999863
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.2e-12 Score=125.87 Aligned_cols=169 Identities=17% Similarity=0.268 Sum_probs=111.4
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
+++|.|+|+|...|.- .+.+++.+.+. .+ +.| +..+ .| .....+..+. .....|+.+|
T Consensus 23 ~~~~~I~~~g~~~P~~~v~~~~l~~~~~--~~-----~~~----i~~~-tG----i~~R~~a~~~-----~~~~~La~~A 81 (359)
T 3h78_A 23 QGNPILAGLGFSLPKRQVSNHDLVGRIN--TS-----DEF----IVER-TG----VRTRYHVEPE-----QAVSALMVPA 81 (359)
T ss_dssp -CCCEEEEEEEECCSEEEEHHHHTTTSS--CC-----HHH----HHHH-HC----CCEEEECCTT-----CCTHHHHHHH
T ss_pred CCCcEEEEEEEECCCceEcHHHHHHHhC--CC-----HHH----HHHh-cC----ceEEEEcCCC-----CCHHHHHHHH
Confidence 4679999999999997 45666654431 10 000 0000 00 0000000111 1234689999
Q ss_pred cchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC-CCc
Q 012867 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (454)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G-ps~ 321 (454)
+++||+++|++++ +++ .|++|+..+++ .....+.+++..+|+.. |.+
T Consensus 82 a~~aL~~agl~~~---dId----~vi~~t~~~~~-------------------------~~p~~a~~v~~~lGl~~~~~~ 129 (359)
T 3h78_A 82 ARQAIEAAGLLPE---DID----LLLVNTLSPDH-------------------------HDPSQACLIQPLLGLRHIPVL 129 (359)
T ss_dssp HHHHHHHTTCCGG---GCC----EEEEECSSCSS-------------------------SBSCHHHHHHHHHTCCSCCEE
T ss_pred HHHHHHhcCCCHH---HCC----EEEEEeCCCCC-------------------------CCCcHHHHHHHHcCCCCCcEE
Confidence 9999999999986 333 67888764221 01125788999999974 889
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC-CCCceeeecCce
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI-NRDGFVMGEGAG 400 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~-~adG~v~GEGaa 400 (454)
.|+.+|+|++.||..|.++|++|.++.+||+|+|.+... +. ++ |. ....+++||||+
T Consensus 130 ~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~-----------~~-----~~------d~~~~t~~lfGDGAa 187 (359)
T 3h78_A 130 DIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKR-----------MD-----CS------DRGRNLSILLGDGAG 187 (359)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGG-----------CC-----CS------TTTHHHHTTBCEEEE
T ss_pred EECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhccc-----------CC-----cc------cccccccceecceeE
Confidence 999999999999999999999999999999999973111 00 11 10 113467999999
Q ss_pred eeehHHh
Q 012867 401 VLLLEEL 407 (454)
Q Consensus 401 alvLe~l 407 (454)
++||++.
T Consensus 188 A~vl~~~ 194 (359)
T 3h78_A 188 AVVVSAG 194 (359)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9999863
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-11 Score=118.61 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=91.4
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ .|++|+..+++. . ...+.+++..+
T Consensus 58 ~~~La~~Aa~~aL~~ag~~~~---~Id----~vi~~t~~~~~~------------------------~-p~~a~~v~~~l 105 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQ---DIE----LIIVATTSHSHA------------------------Y-PSAACQVQGLL 105 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGG---GCC----EEEEECSCCSCS------------------------S-SCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCCC------------------------C-ccHHHHHHHHh
Confidence 457999999999999999986 333 688887643210 1 12578899999
Q ss_pred cCc-CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 315 gl~-Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
|+. .|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+ |.. .+ ++.....+
T Consensus 106 Gl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~---------------s~~-------~~-~~d~~~~~ 162 (323)
T 3il3_A 106 NIDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLN---------------SRK-------LD-ETDRSTVV 162 (323)
T ss_dssp TCSSCEEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG---------------GGS-------CC-TTCTTTTT
T ss_pred CCCCccEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeecc---------------ccc-------cC-cccccccc
Confidence 995 5889999999999999999999999999999999999983 210 00 11122467
Q ss_pred eeecCceeeehHHh
Q 012867 394 VMGEGAGVLLLEEL 407 (454)
Q Consensus 394 v~GEGaaalvLe~l 407 (454)
++||||+++||++.
T Consensus 163 lfGDGA~A~vl~~~ 176 (323)
T 3il3_A 163 LFGDGAGAVILEAS 176 (323)
T ss_dssp TBCEEEEEEEEEEE
T ss_pred ccccceEEEEEEEc
Confidence 89999999999864
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-11 Score=118.39 Aligned_cols=121 Identities=19% Similarity=0.137 Sum_probs=90.8
Q ss_pred HHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhh
Q 012867 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (454)
Q Consensus 234 p~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~ 313 (454)
....|+.+|+.+||+++|++++ +++ .|++++.... .+. . ...+.+|+..
T Consensus 53 ~~~~La~~Aa~~aL~~ag~~~~---dId----~vi~~t~~~~------------------~~d----~--~~~a~~v~~~ 101 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDVDPA---DVS----LVLHSSLWFQ------------------GID----L--WPAASYVAHE 101 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGG---GEE----EEEEECSSCC------------------SSS----S--SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCC------------------Ccc----c--ccHHHHHHHH
Confidence 3567999999999999999976 333 5777765200 000 0 0247789999
Q ss_pred ccCcC-CCcceeccccccceeeeccccceeccccc--eEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCC
Q 012867 314 LGWMG-PNYSISTACATSNFCILNAANHIIRGEAN--VMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (454)
Q Consensus 314 ~gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d--~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~a 390 (454)
+|+.. |.+.|+.+|+|++.||..|.++|++|.++ .+||+|+|.+..+. ...|+. +
T Consensus 102 lG~~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~---------------------~~~~~~-~ 159 (357)
T 3s3l_A 102 AVGRHVPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR---------------------IDRWNS-V 159 (357)
T ss_dssp HTCSSSCEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTT---------------------CCTTTS-S
T ss_pred hCCCCCcEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEecccccc---------------------cccccc-c
Confidence 99964 88999999999999999999999999999 99999999732110 011222 2
Q ss_pred CceeeecCceeeehHHh
Q 012867 391 DGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 391 dG~v~GEGaaalvLe~l 407 (454)
..+++||||+++||++.
T Consensus 160 ~~~lfGDGA~A~vl~~~ 176 (357)
T 3s3l_A 160 DVTMYGDGAAALVLSTR 176 (357)
T ss_dssp SSCCBCCEEEEEEEESS
T ss_pred CCcccccccEEEEEecC
Confidence 57899999999999863
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-10 Score=114.61 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=89.2
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+++||+++|++++ +++ .|++++..+++ .....+.+|...||
T Consensus 63 ~~la~~Aa~~aL~~ag~~~~---dId----~li~~t~t~~~-------------------------~~P~~a~~v~~~LG 110 (350)
T 4ewp_A 63 PVMAVGAAREALERAGLQGS---DLD----AVIVSTVTFPH-------------------------ATPSAAALVAHEIG 110 (350)
T ss_dssp HHHHHHHHHHHHHHTTCCGG---GCS----EEEEECSCCSC-------------------------SSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC-------------------------CCCchHHHHHHHhC
Confidence 45899999999999999986 232 46677664322 11234788999999
Q ss_pred CcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCcee
Q 012867 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (454)
Q Consensus 316 l~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v 394 (454)
++. +++.|..+|++++.||..|.++|++|..+.+||.++|.+ |.. ..+. .....++
T Consensus 111 l~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~---------------s~~-------~d~~-~~~~~~l 167 (350)
T 4ewp_A 111 ATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERL---------------SDV-------VDPT-DRSISFL 167 (350)
T ss_dssp CTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG---------------GGG-------CCTT-CTTTGGG
T ss_pred CCCceEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeec---------------eec-------cccc-ccccccc
Confidence 975 678899999999999999999999999999999999972 210 0111 2235678
Q ss_pred eecCceeeehHHh
Q 012867 395 MGEGAGVLLLEEL 407 (454)
Q Consensus 395 ~GEGaaalvLe~l 407 (454)
+|+|++++||++.
T Consensus 168 fgDGA~A~vl~~~ 180 (350)
T 4ewp_A 168 LGDGAGAVIVAAS 180 (350)
T ss_dssp BCEEEEEEEEEEE
T ss_pred cccchheeeeecc
Confidence 9999999999863
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.3e-10 Score=115.49 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=90.3
Q ss_pred hHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhh
Q 012867 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (454)
Q Consensus 233 dp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~ 312 (454)
+....|+.+|+.+||+++|++++ +++ .|+++++.+ + .....+.+|+.
T Consensus 135 ~~~~~La~~Aa~~AL~~agi~~~---dId----~li~~t~t~---------------------~-----~~P~~a~~v~~ 181 (413)
T 3v7i_A 135 EAVQAYGERAARGALQIAGLDVA---DVD----CLITSNSTT---------------------P-----ALPGLDVALAN 181 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECCSS---------------------C-----CSSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCcCHH---HCC----EEEEEccCC---------------------C-----CcCHHHHHHHH
Confidence 34667999999999999999976 333 678887632 1 11235788999
Q ss_pred hccCcCC--Ccce-eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCC
Q 012867 313 DLGWMGP--NYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (454)
Q Consensus 313 ~~gl~Gp--s~tv-~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~ 389 (454)
.+|+.+. .+.| ..+|+|++.||..|.++|++|.++.+||+|+|.+ |. ..++ +..
T Consensus 182 ~LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~---------------S~-------~~~~-~d~ 238 (413)
T 3v7i_A 182 RLPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEAL---------------ST-------TYQP-ADD 238 (413)
T ss_dssp HTTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECG---------------GG-------GCCS-SCC
T ss_pred HhCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEecc---------------cc-------ccCc-ccc
Confidence 9999873 4667 8999999999999999999999999999999983 21 0111 111
Q ss_pred CC-----ceeeecCceeeehHHh
Q 012867 390 RD-----GFVMGEGAGVLLLEEL 407 (454)
Q Consensus 390 ad-----G~v~GEGaaalvLe~l 407 (454)
.. ..++||||+++||++.
T Consensus 239 ~~~~lv~~~LFGDGAaAvvl~~~ 261 (413)
T 3v7i_A 239 TLESLIVRLLFADTAVAAVVTGR 261 (413)
T ss_dssp STTHHHHHHHBCCEEEEEEEESS
T ss_pred chhhhhcceeeccccEEEEEEec
Confidence 12 6789999999999863
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-09 Score=114.19 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=90.1
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+.+||+++|++++ +++ .|+++++. ++ .....+.+|+..+
T Consensus 110 a~~La~~Aa~~AL~~agi~~~---dId----~li~~t~t-~~-------------------------~~P~~a~~v~~~L 156 (465)
T 3e1h_A 110 GVPLAVEASRKAMAEARLVPA---QIT----HMVSTTCT-DS-------------------------ANPGYDHYVAKEL 156 (465)
T ss_dssp THHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSS-CC-------------------------CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeeC-CC-------------------------CCCcHHHHHHHHh
Confidence 457999999999999999976 333 57777753 21 1123478899999
Q ss_pred cCcC-C-Ccce-eccccccceeeeccccceec----cccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCcc
Q 012867 315 GWMG-P-NYSI-STACATSNFCILNAANHIIR----GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (454)
Q Consensus 315 gl~G-p-s~tv-~tACsSsl~AI~~A~~~I~~----G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd 387 (454)
|++. + .+.| ..+|++++.||..|.++|+. |.++.+||+|+|.+ +...-..... +. ...+
T Consensus 157 Gl~~~~~~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~-S~~~~~~~~~---~~----------~~~~ 222 (465)
T 3e1h_A 157 GLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVS-TTMVRSELES---ID----------ALQE 222 (465)
T ss_dssp TCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECC-GGGHHHHHHH---HH----------HHTC
T ss_pred CCCCCeeEEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeec-chhcCccccc---cc----------cccc
Confidence 9986 4 5778 79999999999999999997 99999999999983 2211000000 00 0012
Q ss_pred CCCCceeeecCceeeehHHh
Q 012867 388 INRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 388 ~~adG~v~GEGaaalvLe~l 407 (454)
.....+++||||+++||++.
T Consensus 223 d~~t~~LFGDGAaAvVl~~~ 242 (465)
T 3e1h_A 223 TRIGIALFSDCASAVILSNG 242 (465)
T ss_dssp CCCHHHHBCCEEEEEEEECC
T ss_pred ccccccccccceeEEEEEcc
Confidence 23356789999999999864
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.7e-10 Score=116.00 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=88.7
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+.+||+++|++++ +++ .|++|+..+.+ .....+..|+..|
T Consensus 52 ~~~La~~Aa~~aL~~agi~~~---~Id----~li~~t~t~~~-------------------------~~p~~a~~v~~~l 99 (450)
T 2f82_A 52 VISMSFNAVTSLLEKYKIDPK---QIG----RLEVGSETVID-------------------------KSKSIKTFLMQLF 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCCGG---GEE----EEEEECCCCSC-------------------------SSSCHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCcCHH---HCC----EEEEEecCCCC-------------------------CCCcHHHHHHHHh
Confidence 356999999999999999875 222 46667763221 1124578899999
Q ss_pred cC----cCCCcceeccccccceeeeccccceecccc--ceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccC
Q 012867 315 GW----MGPNYSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (454)
Q Consensus 315 gl----~Gps~tv~tACsSsl~AI~~A~~~I~~G~~--d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~ 388 (454)
|+ ..+.+.|..+|+|++.||..|.++|++|.+ +.+||+|+|.+. |+.
T Consensus 100 gl~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~---------------------------~~~ 152 (450)
T 2f82_A 100 EKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV---------------------------YAE 152 (450)
T ss_dssp HTTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC---------------------------CSS
T ss_pred CCcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc---------------------------ccC
Confidence 98 357899999999999999999999999998 999999999731 111
Q ss_pred CCCceeeecCceeeehHHh
Q 012867 389 NRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 389 ~adG~v~GEGaaalvLe~l 407 (454)
..++.+.||||+++||++.
T Consensus 153 ~~~~~~fGDGA~A~ll~~~ 171 (450)
T 2f82_A 153 GPARPTGGAAAIAMLIGPD 171 (450)
T ss_dssp STTGGGCEEEEEEEEEESS
T ss_pred CCCCcccccceEEEEeccC
Confidence 2367789999999999864
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-09 Score=106.62 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=107.6
Q ss_pred eEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 166 ~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
.|.|+|+|..+|.- .+.+++-+.+ |.+. .++ .... | +.. ..+..+.+ ....|+.+|++
T Consensus 7 ~v~I~~~g~y~P~~~v~~~~l~~~~--g~~~----~~~-~~~~-----G-i~~---r~~~~~~e-----~~~~La~~Aa~ 65 (388)
T 3v4n_A 7 TIGIDKISFFVPPYYIDMTALAEAR--NVDP----GKF-HIGI-----G-QDQ---MAVNPISQ-----DIVTFAANAAE 65 (388)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHT--TSCT----HHH-HTTT-----C-CCE---EECCCTTC-----CHHHHHHHHHH
T ss_pred eEEEEEEEEECCCeEEcHHHHHHHh--CCCH----HHH-HHHh-----C-ceE---EEECCCCC-----CHHHHHHHHHH
Confidence 69999999999996 5666665543 1110 000 0000 0 000 00001111 23568999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC--CCcc
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNYS 322 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G--ps~t 322 (454)
+||+++| ++ +++ .|++|+..+++. ....+..|+..||+.+ +.+.
T Consensus 66 ~aL~~a~--~~---~Id----~li~~t~t~~~~-------------------------~ps~a~~v~~~LGl~~~~~~~d 111 (388)
T 3v4n_A 66 AILTKED--KE---AID----MVIVGTESSIDE-------------------------SKAAAVVLHRLMGIQPFARSFE 111 (388)
T ss_dssp TTCCHHH--HH---HEE----EEEEECSSCSBS-------------------------SSCHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHhCC--cc---cCC----EEEEEeccCCCc-------------------------CccHHHHHHHHcCCCCCceEee
Confidence 9999986 44 333 577887643221 1234788999999976 7889
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|..+|++++.||..|.++|++|.++.+||+|+|.+.. -++ ..+.++.|+||+++
T Consensus 112 v~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~-------------------------~~~-~~~~~lfGDGA~A~ 165 (388)
T 3v4n_A 112 IKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKY-------------------------GLN-SGGEPTQGAGAVAM 165 (388)
T ss_dssp EESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECC-------------------------CTT-CTTGGGCEEEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhcc-------------------------cCC-CCCCCccccceeEE
Confidence 9999999999999999999999999999999998311 011 01247799999999
Q ss_pred ehHH
Q 012867 403 LLEE 406 (454)
Q Consensus 403 vLe~ 406 (454)
||++
T Consensus 166 ll~~ 169 (388)
T 3v4n_A 166 LVSS 169 (388)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 9986
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-08 Score=106.73 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=105.6
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHh
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~a 242 (454)
+..|.|.|+|..+|.- .+.+++.+.. |.+. . .+... .| +..+ .+..+. .....|+.+|
T Consensus 22 ~~~vgI~aig~y~P~~~v~~~el~~~~--g~~~-----~----~~~~~-~G-i~~r---~~~~~~-----e~~~~La~~A 80 (478)
T 2p8u_A 22 SMDVGIVALEIYFPSQYVDQAELEKYD--GVDA-----G----KYTIG-LG-QAKM---GFCTDR-----EDINSLCMTV 80 (478)
T ss_dssp HHCCEEEEEEEECCSEEEEHHHHHHHH--TCCT-----T----CCCCC-CC-CCEE---ECCCTT-----CCHHHHHHHH
T ss_pred CCceEEEEEEEECCCeEecHHHHHHHh--CCCh-----h----Hhecc-cC-ceEE---EeCCCC-----CCHHHHHHHH
Confidence 3468999999999986 5666665443 2110 0 01000 00 1100 001111 1235689999
Q ss_pred cchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC---cC-
Q 012867 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW---MG- 318 (454)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl---~G- 318 (454)
+.+||+++|++++ +++ .|++|+..+.+. ....+..|...|+. .+
T Consensus 81 a~~aL~~agi~~~---dId----~li~~T~t~~~~-------------------------~ps~a~~v~~~L~~lG~~~~ 128 (478)
T 2p8u_A 81 VQNLMERNNLSYD---CIG----RLEVGTETIIDK-------------------------SKSVKTNLMQLFEESGNTDI 128 (478)
T ss_dssp HHHHHHHTTCCGG---GEE----EEEEECSCCSCS-------------------------SSCHHHHHGGGTTTTTCCCC
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEccCCccc-------------------------CccHHHHHHHHHhhcCCCCc
Confidence 9999999999875 222 567777643211 12246677754444 43
Q ss_pred CCcceeccccccceeeeccccceeccc--cceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeee
Q 012867 319 PNYSISTACATSNFCILNAANHIIRGE--ANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (454)
Q Consensus 319 ps~tv~tACsSsl~AI~~A~~~I~~G~--~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~G 396 (454)
+.+.|..+|++++.||..|.++|++|. .+.+||.|+|.. - |.........|
T Consensus 129 ~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia---------------~------------~~~~~~~~~fG 181 (478)
T 2p8u_A 129 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA---------------V------------YATGNARPTGG 181 (478)
T ss_dssp BCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE---------------C------------CCSSTTGGGCE
T ss_pred eEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee---------------c------------ccCCCCCCccc
Confidence 678899999999999999999999999 999999999941 0 11111346799
Q ss_pred cCceeeehHH
Q 012867 397 EGAGVLLLEE 406 (454)
Q Consensus 397 EGaaalvLe~ 406 (454)
+||+++||++
T Consensus 182 dGA~A~Ll~~ 191 (478)
T 2p8u_A 182 VGAVALLIGP 191 (478)
T ss_dssp EEEEEEEEES
T ss_pred ceeEEEEEec
Confidence 9999999975
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-08 Score=100.98 Aligned_cols=121 Identities=21% Similarity=0.189 Sum_probs=80.5
Q ss_pred HHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 236 ~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
..|+.+|+++||++||++++ +++ .|++|+... . ...+..++..+|
T Consensus 56 sdLa~~Aa~~AL~~AGi~~~---DID----~II~gt~t~---------------------q-------~~~A~~va~~Lg 100 (347)
T 3lma_A 56 RKLMEDAVQSALSKQNLKKE---DID----IFLAGDLLN---------------------Q-------NVTANYVARHLK 100 (347)
T ss_dssp HHHHHHHHHHHHHTTTCCGG---GCS----EEEEEESSS---------------------S-------STTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCCC---------------------c-------hhHHHHHHHHhC
Confidence 56899999999999999986 333 577776521 0 113556666664
Q ss_pred CcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceee
Q 012867 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (454)
Q Consensus 316 l~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~ 395 (454)
+ |.+.|..+|+|++.||..|..+|++|.++.+||+|+|.+........|. ..-+..+|... -..
T Consensus 101 i--pafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p----------~e~g~q~p~ta----~~t 164 (347)
T 3lma_A 101 I--PFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYP----------TEYGGQKPGTA----TST 164 (347)
T ss_dssp C--CEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC------------------------------C
T ss_pred C--CEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCc----------chhcccCCchh----cEE
Confidence 3 8999999999999999999999999999999999999843221110000 00112233322 234
Q ss_pred ecCceeeehHHh
Q 012867 396 GEGAGVLLLEEL 407 (454)
Q Consensus 396 GEGaaalvLe~l 407 (454)
++|+|++||++.
T Consensus 165 ~dGAGA~VL~~~ 176 (347)
T 3lma_A 165 VTGSGAVVLSQQ 176 (347)
T ss_dssp CCEEEEEEEESS
T ss_pred ccceeEEEEEec
Confidence 589999999853
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.7e-07 Score=93.07 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=101.3
Q ss_pred ceEEEecccccccCC-CCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 165 ~~IaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
+.|-|.|+|..+|.- .+.+++-+..-.- ...+..+. | +.. ..+.++.| ...-|+.+|+
T Consensus 4 ~~VgI~~~g~y~P~~~v~~~~l~~~~~~~-----------~~~i~~~~-G-i~~---r~~~~~~E-----~~~~ma~~Aa 62 (460)
T 2wya_A 4 KDVGILALEVYFPAQYVDQTDLEKYNNVE-----------AGKYTVGL-G-QTR---MGFCSVQE-----DINSLCLTVV 62 (460)
T ss_dssp SSCEEEEEEEECCSEEEEHHHHHHHTTCC-----------TTCCCCCC-C-CCE---EECCCTTC-----CHHHHHHHHH
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHhCCC-----------HHHHHHhh-C-cEE---EEECCCCC-----CHHHHHHHHH
Confidence 568999999999987 5666654432111 01111111 1 000 00111222 1234899999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccCcC----C
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG----P 319 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p 319 (454)
.+||+++|++++ +++ -|++||..+.+. ....+..|...||+.| +
T Consensus 63 ~~al~~a~i~~~---~Id----~ii~aT~t~~~~-------------------------~ps~a~~v~~~l~~~g~~~~~ 110 (460)
T 2wya_A 63 QRLMERIQLPWD---SVG----RLEVGTETIIDK-------------------------SKAVKTVLMELFQDSGNTDIE 110 (460)
T ss_dssp HHHHHHHTCCGG---GEE----EEEEECSCCSCS-------------------------SSCHHHHHGGGTGGGTCCCCB
T ss_pred HHHHHHcCCCHH---HCC----EEEEEeCCCCCC-------------------------CCchHHHHHHHHhccCCCCee
Confidence 999999999875 222 477787643221 1224678888898766 3
Q ss_pred CcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCc
Q 012867 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (454)
Q Consensus 320 s~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGa 399 (454)
++.+..||++++.||..|.++|++|..+.+++..+...+ + -|.........|+|+
T Consensus 111 a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~--------------~-----------~~~d~~~~~~~GdGA 165 (460)
T 2wya_A 111 GIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDI--------------A-----------VYPSGNARPTGGAGA 165 (460)
T ss_dssp CCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE--------------E-----------CCCSSTTGGGCEEEE
T ss_pred EechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccc--------------c-----------ccccccccccCcchH
Confidence 577899999999999999999999988755443222211 1 011222344579999
Q ss_pred eeeehHH
Q 012867 400 GVLLLEE 406 (454)
Q Consensus 400 aalvLe~ 406 (454)
+++++++
T Consensus 166 ~A~l~~~ 172 (460)
T 2wya_A 166 VAMLIGP 172 (460)
T ss_dssp EEEEEES
T ss_pred Hhhhccc
Confidence 9999875
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0009 Score=53.32 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=42.0
Q ss_pred ccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+.+..|.++ +|||.++|+++|++...|+. + +.+.+|++ ||...|+
T Consensus 40 ~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~-l----~~~~l~~~-~ti~~la 87 (95)
T 2ju1_A 40 AVRATTPFKELGFDSLAAVRLRNLLNAATGLR-L----PSTLVFDH-PNASAVA 87 (95)
T ss_dssp GCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSC-C----CTTHHHHC-SSHHHHH
T ss_pred hCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC-C----ChhHHhcC-CCHHHHH
Confidence 45568899999 99999999999999999987 7 88899999 8988887
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.00054 Score=54.87 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=38.0
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+.+|.++ +|||.+||++|||...+|+. + |.+.+|.. |...|+
T Consensus 27 I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~-l----p~~~l~~~--Ti~~La 72 (91)
T 2cg5_B 27 VNLDSSLADLGLDALMSVEVRQTLERELNLV-L----SVREVRQL--TLRKLQ 72 (91)
T ss_dssp SCTTSBTTTTTCCHHHHHHHHHHHHHHHCCC-C----CHHHHHTC--BHHHHH
T ss_pred CCCCCCHHHhCCcchHHHHHHHHHHHHHCCC-C----CHHHHHhC--CHHHHH
Confidence 4567889999 99999999999999999998 7 88887763 666666
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.005 Score=47.91 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=40.9
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..|.++ +|||.+++++++++...|+. + +.+.+|++ ||...|+
T Consensus 34 i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~-i----~~~~~~~~-~ti~~la 80 (88)
T 2afd_A 34 IDMEESFDNYDLNSSKALILLGRLEKWLGKE-L----NPVLIFNY-PTIAQLA 80 (88)
T ss_dssp CCTTSCGGGTTCCSTHHHHHHHHHHHHTTSC-C----CGGGTTTC-CSHHHHH
T ss_pred cCCCCCHHHcCccHHHHHHHHHHHHHHHCCC-c----CHHHHHhC-CCHHHHH
Confidence 4567888999 99999999999999999987 6 88899999 8888777
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.0073 Score=47.25 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=41.2
Q ss_pred ccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCc--cccccCCCCcccch
Q 012867 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGF--SSFFGSNNSTATLN 126 (454)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~--t~~F~~~ptp~~la 126 (454)
..+.+..|.++ +|||.+++++++++...|+. + +. +.+|++ ||...|+
T Consensus 30 ~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~-l----~~~~~~l~~~-~Tv~~la 79 (89)
T 2kr5_A 30 ELTDDSNFADMGIDSLSSMVIGSRFREDLGLD-L----GPEFSLFIDC-TTVRALK 79 (89)
T ss_dssp GCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCC-C----CSSCCTTTSC-CBHHHHH
T ss_pred HCCCCCCHHHcCccHHHHHHHHHHHHHHHCCC-C----CchHHHHHcC-CCHHHHH
Confidence 34567889999 99999999999999999988 6 77 888999 8988887
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.0098 Score=54.72 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=42.5
Q ss_pred cccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 73 SFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 73 ~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+.+..|.++ +|||.++|+++|++...|+. + +.+.+|++ ||...|+
T Consensus 44 ~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~-l----~~~~~~~~-~Ti~~la 92 (212)
T 2l22_A 44 GQIRDGSRFLELGLDSVIAAQWIREINKHYQLK-I----PADGIYTY-PVFKAFT 92 (212)
T ss_dssp TSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCC-C----CTTHHHHC-CBHHHHH
T ss_pred HHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCC-C----CHHHHHcC-CCHHHHH
Confidence 334567889999 99999999999999999998 7 88899999 9998888
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.0052 Score=48.92 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=41.7
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.++.|.++ .|||+++++.++++...|+. + +...+|++ ||...|+
T Consensus 34 i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~-l----~~~~l~~~-pTi~~la 80 (93)
T 4i4d_A 34 VGPHEDFAALGGNSIHAIXITNRVEELVDAE-L----SIRVLLET-RTVAGMT 80 (93)
T ss_dssp CCTTCCTTTTTCCHHHHHHHHHHHHHHHTSC-C----CHHHHHHH-CSHHHHH
T ss_pred CCCCCCHHHcCCcHHHHHHHHHHHHHHhCCC-C----CHHHHHcC-CCHHHHH
Confidence 5668889999 99999999999999999987 6 88899999 9998888
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.01 Score=47.26 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=40.9
Q ss_pred ccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+.+..|.++ +|||.++++++|++...|+. + +.+.+|++ ||...|+
T Consensus 40 ~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~-l----~~~~l~~~-~ti~~la 87 (99)
T 2liu_A 40 EIAEDQKFVDLGLDSIVGVEWTTTINQTYNLN-L----KATKLYDY-PTLLELS 87 (99)
T ss_dssp GCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCC-C----CHHHHHHC-CSHHHHH
T ss_pred HcCCCCCHHHhCccHHHHHHHHHHHHHHHCCC-c----CHHHHHhC-CCHHHHH
Confidence 34567889999 99999999999999999987 6 88889999 8887777
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.014 Score=46.31 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=40.7
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.++.|.++ .|||+++++.++++...|+. + +...+|.+ ||...|+
T Consensus 32 i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~-l----~~~~l~~~-~Ti~~la 78 (91)
T 1dny_A 32 IGILDNFFQIGGHSLKAMAVAAQVHREYQVE-L----PLKVLFAQ-PTIKALA 78 (91)
T ss_dssp CCSSCCTTSSCCSSHHHHHHHHHHHHHCCCC-C----CHHHHHHS-CSHHHHH
T ss_pred CCCCCCHHHcCCCHHHHHHHHHHHHHHHCCC-C----CHHHHHcC-CCHHHHH
Confidence 4567888899 99999999999999999987 6 77888999 8988887
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.05 Score=49.89 Aligned_cols=47 Identities=13% Similarity=0.000 Sum_probs=41.3
Q ss_pred ccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+.+..|.++ +|||.++|++++++...|+. + +.+.+|++ ||...|+
T Consensus 149 ~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~-l----~~~~l~~~-~Ti~~La 196 (212)
T 2l22_A 149 QLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQ-L----AADAIYTW-PTLKSLA 196 (212)
T ss_dssp SCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCC-C----CGGGGGGC-CSHHHHH
T ss_pred hCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCC-c----CHHHHHcC-CCHHHHH
Confidence 34557788899 99999999999999999987 7 88899999 8988887
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.13 Score=38.81 Aligned_cols=46 Identities=9% Similarity=-0.114 Sum_probs=38.1
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..| .++ +|||..+|+..+++...|+. + |...++.+ +|...++
T Consensus 24 i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 71 (79)
T 2l3v_A 24 VTEGASFIDDLGADSLDTVELVMAFEEEFGVE-I----PDDAAETI-LTVGDAV 71 (79)
T ss_dssp CCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCC-C----CHHHHTTC-SSSSTTH
T ss_pred CCCCCccccccCCCHHHHHHHHHHHHHHHCCC-C----CHHHHHHc-CCHHHHH
Confidence 3456677 899 99999999999999999998 6 66667777 7887776
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.081 Score=54.92 Aligned_cols=46 Identities=7% Similarity=0.032 Sum_probs=0.0
Q ss_pred ccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+.++.|.++ .|||+++++.++++. .|+. + +...+|.+ ||...|+
T Consensus 62 ~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~-~----~~~~~~~~-~t~~~la 108 (508)
T 4f6l_B 62 DVGVDDDFFELGGNSLEAMLVVSHLKR-FGHH-I----SMQTLYQY-KTVRQIV 108 (508)
T ss_dssp ------------------------------------------------------
T ss_pred CCCCCCChHHcCchHHHHHHHHHHHHH-cCCC-c----cHHHHhcC-CcHHHHH
Confidence 35678999999 999999999999986 7776 6 77889999 9999998
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=88.54 E-value=0.06 Score=42.94 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=40.4
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+..|.++ +|||..+|+..++...+|+. + |...+|++ +|+..++
T Consensus 28 i~~d~~~~dlG~DSL~~vel~~~le~~fgi~-i----~~~~l~~~-~Tv~~l~ 74 (95)
T 1nq4_A 28 DVEDVAFDALGYDSLALLNTVGRIERDYGVQ-L----GDDAVEKA-TTPRALI 74 (95)
T ss_dssp CCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC-S----CTTHHHHC-CSHHHHH
T ss_pred CCCCCChhhhCCCHHHHHHHHHHHHHHHCCc-c----CHHHHHcC-CCHHHHH
Confidence 4457788999 99999999999999999998 7 77788888 8988887
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=87.53 E-value=0.066 Score=41.16 Aligned_cols=44 Identities=9% Similarity=-0.073 Sum_probs=37.8
Q ss_pred CCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 77 ~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+..|.++ +|||..+|+..++...+|+. + |...++.+ +|...++
T Consensus 29 ~~~~~~dlG~DSL~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 73 (83)
T 1or5_A 29 LDTPFVDLGYDSLALLETAAVLQQRYGIA-L----TDETVGRL-GTPRELL 73 (83)
T ss_dssp SSSCHHHHSCCHHHHHHHHHHHHTTSCCC-C----SHHHHHHC-CCSHHHH
T ss_pred CCCcHHHhCCCHHHHHHHHHHHHHHHCCc-c----CHHHHhcc-CCHHHHH
Confidence 46679999 99999999999999999998 6 77677777 8887776
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=86.19 E-value=0.15 Score=39.33 Aligned_cols=45 Identities=9% Similarity=-0.114 Sum_probs=36.9
Q ss_pred CCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 76 GSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 76 ~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+..|.++ +|||..+|+..+++...|+. + |...++.+ +|...++
T Consensus 30 ~~~~~l~dlG~DSL~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 75 (86)
T 1af8_A 30 FLDLRFEDIGYDSLALMETAARLESRYGVS-I----PDDVAGRV-DTPRELL 75 (86)
T ss_dssp SSTTSTTTTTCCTTTHHHHHHHHTTTTCSC-C----CTTTTTTC-CSHHHHH
T ss_pred CCCCChhhcCCCHHHHHHHHHHHHHHHCCC-c----CHHHHHcC-CCHHHHH
Confidence 346678899 99999999999999999998 6 66666666 7777666
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=85.99 E-value=0.12 Score=39.45 Aligned_cols=46 Identities=7% Similarity=-0.111 Sum_probs=37.4
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..|.++ +|||..+|+..++...+|+. + |...++.+ +|...++
T Consensus 25 i~~~~~l~dlG~DSl~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 71 (82)
T 2ava_A 25 VTADSEFSKLGADSLDTVEIVMNLEEEFGIN-V----DEDKAQDI-STIQQAA 71 (82)
T ss_dssp CCSSCCSCCCTTCCSCHHHHHHHHHHHTTCC-C----CGGGSSSC-CSHHHHH
T ss_pred cCCCCchhhcCCCHHHHHHHHHHHHHHHCCc-c----CHHHHHhC-CCHHHHH
Confidence 3456667799 99999999999999999998 6 66666777 7877776
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=84.71 E-value=0.082 Score=39.97 Aligned_cols=46 Identities=9% Similarity=-0.104 Sum_probs=37.6
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..| .++ +|||..+|+..+++..+|+. + |...+|.+ +|...++
T Consensus 23 i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~-i----~~~~l~~~-~Tv~~l~ 70 (78)
T 1l0i_A 23 VTNNASFVEDLGADSLDTVELVMALEEEFDTE-I----PDEEAEKM-TTVQAAI 70 (78)
T ss_dssp CCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCC-C----CHHHHTTC-CBHHHHH
T ss_pred CCCCcchhhhcCCCHHHHHHHHHHHHHHhCCC-C----CHHHHHHc-CCHHHHH
Confidence 3456667 699 99999999999999999998 6 66667777 7877776
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=83.74 E-value=0.093 Score=39.34 Aligned_cols=46 Identities=7% Similarity=-0.119 Sum_probs=37.6
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..| .++ +|||..+++.++++...|+. + +...+|.+ +|...++
T Consensus 21 i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~-i----~~~~~~~~-~tv~~l~ 68 (77)
T 2ehs_A 21 ITPEAKFVEDLGADSLDVVELIMAFEEEFGIE-I----PDEDAEKI-QTVGDVI 68 (77)
T ss_dssp CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCC-C----CHHHHHTC-CBHHHHH
T ss_pred CCCccchhhccCCCHHHHHHHHHHHHHHhCCc-c----CHHHHHHc-CCHHHHH
Confidence 3456677 899 99999999999999999987 6 66667777 7777766
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=83.68 E-value=0.18 Score=38.29 Aligned_cols=46 Identities=7% Similarity=-0.143 Sum_probs=37.1
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..| .++ +|||..+|+..+++...|+. + |...++.+ +|...++
T Consensus 26 i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 73 (81)
T 2lol_A 26 ITTDSRFIEDLKADSLDTVELMMAIEVEYGID-I----PDDEATKI-KTVSDVI 73 (81)
T ss_dssp CCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCC-C----CGGGGGGS-SSHHHHH
T ss_pred CCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCC-C----CHHHHHHc-CCHHHHH
Confidence 3445666 799 99999999999999999998 6 66667777 7776666
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.40 E-value=0.29 Score=39.61 Aligned_cols=46 Identities=9% Similarity=-0.111 Sum_probs=36.4
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+..|.++ +|||..+|+.+++...+|+. + |...++.. +|...|+
T Consensus 46 I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~-i----~~~~l~~~-~TV~~l~ 92 (103)
T 2lte_A 46 ISRDSRMEDLAFDSLVVSELSLKLRKEFGVT-G----VDDELDLL-ETVDELF 92 (103)
Confidence 4456778999 99999999999999999998 6 55555666 6665555
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.50 E-value=0.18 Score=40.25 Aligned_cols=46 Identities=7% Similarity=-0.165 Sum_probs=37.7
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+..| .++ +|||..+|+..+++..+|+. + +...++.+ +|...|+
T Consensus 35 i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~-i----~~~~l~~~-~Tv~~l~ 82 (99)
T 2dnw_A 35 LSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFE-I----PDIDAEKL-MCPQEIV 82 (99)
T ss_dssp CCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCC-C----CHHHHTTC-CSHHHHH
T ss_pred CCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC-C----CHHHHHhC-CCHHHHH
Confidence 3445666 799 99999999999999999998 6 66667777 7887777
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.36 E-value=0.37 Score=46.24 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=10.2
Q ss_pred hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 85 MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 85 ~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.|||++++|+++++..+|+. + +...+|++ ||...|+
T Consensus 2 GdSL~a~~l~~rl~~~~g~~-l----~~~~lf~~-pt~~~l~ 37 (316)
T 2px6_A 2 SHNLACPTPKEDGLAQQQTQ-L----NLRSLLVN-PEGPTLM 37 (316)
T ss_dssp -----------------------------CCCCC-TTSCSEE
T ss_pred CchHHHHHHHHHHHHHHhhc-c----chhhhhcC-CCcCeeE
Confidence 38999999999999999998 7 88899999 8887776
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.22 E-value=0.12 Score=39.15 Aligned_cols=46 Identities=7% Similarity=-0.177 Sum_probs=37.4
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.+..| .++ +|||..+++..+++..+|+. + |...+|.+ +|...++
T Consensus 25 i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 72 (80)
T 1x3o_A 25 VTLEARFIEDLGADSLDTVELIMGLEDEFGLE-I----SDEEAEKI-RTVKDAV 72 (80)
T ss_dssp CCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCC-C----CHHHHHHC-CBHHHHH
T ss_pred CCCcCcHHhhcCccHHHHHHHHHHHHHHHCCC-c----CHHHHHHc-CCHHHHH
Confidence 4456677 899 99999999999999999987 6 66666777 7776666
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=80.83 E-value=0.16 Score=38.54 Aligned_cols=46 Identities=9% Similarity=-0.135 Sum_probs=37.0
Q ss_pred cCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+..| .++ +|||..+|+..+++..+|+. + +...++.+ +|...++
T Consensus 27 i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 74 (81)
T 1f80_D 27 VKLEASFKEDLGADXLDVVELVMELEDEFDME-I----SDEDAEKI-ATVGDAV 74 (81)
T ss_dssp CCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC-C----CHHHHHHC-CBHHHHH
T ss_pred CCCccchHHHcCCcHHHHHHHHHHHHHHhCCc-c----CHHHHHHC-CCHHHHH
Confidence 4456777 899 99999999999999999998 6 66666666 6776665
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=80.57 E-value=0.14 Score=49.81 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=41.6
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.++.|.++ .|||+++++.++++...|+. + +...+|.+ ||...|+
T Consensus 29 i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~-~----~~~~~~~~-~t~~~la 75 (329)
T 3tej_A 29 QDADADFFALGGHXLLAMKLAAQLSRQVARQ-V----TPGQVMVA-STVAKLA 75 (329)
T ss_dssp CSTTCBTTTTTCCHHHHHHHHHHHHHHHTSC-C----CHHHHHHC-CBHHHHH
T ss_pred CCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC-C----CHHHHHhC-CCHHHHH
Confidence 4568899999 99999999999999999987 6 78889999 9998888
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.11 E-value=0.18 Score=41.47 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=40.7
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCC-CccccCCCCccccccCCCCcccchh
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVS-SLGFFGDNGFSSFFGSNNSTATLNR 127 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~g-l~~l~~~~~~t~~F~~~ptp~~la~ 127 (454)
.++++.|.++ -+||++++|..+++...| +. + +..-+|.+ ||...|+.
T Consensus 44 i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~-l----~l~~Lf~~-pTl~~lA~ 92 (110)
T 2cq8_A 44 VEDSTDFFKSGAASVDVVRLVEEVKELCDGLE-L----ENEDVYMA-STFGDFIQ 92 (110)
T ss_dssp CCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCC-C----CHHHHHHC-CBHHHHHH
T ss_pred CCCCCCHHhcCChHHHHHHHHHHHHHHcCCCC-c----CHHHHHhC-CCHHHHHH
Confidence 4678899999 999999999999999888 76 5 66679999 99988883
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 454 | ||||
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 6e-71 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 6e-68 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 3e-60 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 4e-57 | |
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 2e-52 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 3e-52 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 1e-35 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 1e-29 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 4e-17 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 2e-15 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 2e-05 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 2e-05 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 3e-05 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 5e-05 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 2e-04 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 7e-04 |
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 223 bits (568), Expect = 6e-71
Identities = 107/252 (42%), Positives = 158/252 (62%), Gaps = 5/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLD 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+L +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 62 RKEL-RRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 AL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVMGEGAGVL+
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGA 415
LE EHAKKRGA
Sbjct: 238 LEAYEHAKKRGA 249
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 215 bits (547), Expect = 6e-68
Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 4/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ + +
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ K ++MD F+ Y + AG +A+ D G+ E + ++ G IGSG+GG+ + +
Sbjct: 62 SRKEQRKMDAFIQYGIVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHT 118
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+L +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 119 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAY 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+L+
Sbjct: 179 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 238
Query: 404 LEELEHAKKRGA 415
LEE EHAKKRGA
Sbjct: 239 LEEYEHAKKRGA 250
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 195 bits (496), Expect = 3e-60
Identities = 107/252 (42%), Positives = 156/252 (61%), Gaps = 4/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F ++
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFL 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +KRMD+F + + A ++A+ D + +NEL+ + GVLIG+G+GG+KV D
Sbjct: 62 DRKEAKRMDRFCHFAVCASQQAINDAKLV---INELNADEIGVLIGTGIGGLKVLEDQQT 118
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L + +PF +P NM S + A++LG GPN TACA + I +A +
Sbjct: 119 ILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQN 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+G+L+
Sbjct: 179 GYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILI 238
Query: 404 LEELEHAKKRGA 415
LEELE A RGA
Sbjct: 239 LEELESALARGA 250
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 187 bits (475), Expect = 4e-57
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 5/256 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 5 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 64
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + L++ + GV++ SG+GG+K
Sbjct: 65 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVIVASGIGGIKEIE 121
Query: 281 DAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D + L K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 122 DQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFR 181
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVMGEG+
Sbjct: 182 SIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVMGEGS 240
Query: 400 GVLLLEELEHAKKRGA 415
G+L+LE LEHA+KRGA
Sbjct: 241 GMLVLESLEHAEKRGA 256
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 175 bits (444), Expect = 2e-52
Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 19/271 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--------------CTSFPTK 210
+RVVVTG+G+V+PLG + + L++G GI + D +K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 211 IAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
+AA + S G L SK + F+ Y + A +AL D E +++ +
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 268 LIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
G G V + ++++PF +P NM S ++M G+ GPN++ TAC
Sbjct: 121 GGGIGSICDIVEAAQLI-CEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTAC 179
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPW 386
AT I +A I G+A+VM+ GG+++++ + + GF RALS + N P +ASRP+
Sbjct: 180 ATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPF 239
Query: 387 DINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417
D +RDGFV+GEG+GV++LEE EHAK+RGAKI
Sbjct: 240 DCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 174 bits (441), Expect = 3e-52
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 5/255 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K +T
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLID 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ D + L+ A + + G++ GSG G + +
Sbjct: 62 RKVVRFMSDASIYAFLSM---EQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 285 ALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
A+R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
G+ +++ GG + + ++ N+ P KASR +D +RDGFV+ G G++
Sbjct: 179 LGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMV 238
Query: 403 LLEELEHAKKRGAKI 417
++EELEHA RGA I
Sbjct: 239 VVEELEHALARGAHI 253
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 129 bits (324), Expect = 1e-35
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
P+ RMD+ + + ++A A G+ D ++ + ++ Y +
Sbjct: 61 GPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLS 120
Query: 285 ----ALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+ ++ + ++ A +A +G GP +ST C + + NA
Sbjct: 121 DSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRA 180
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376
I G A+VM G +D + PI + F A RA + RN
Sbjct: 181 IEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 112 bits (281), Expect = 1e-29
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 3/207 (1%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAP 226
V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F +
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPG 61
Query: 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL 286
+L + D LTA AL D + + + D + G + +
Sbjct: 62 RLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVT--ANACGGFDFTHREFRKLW 119
Query: 287 RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA 346
K ++ + + + +++ G GP+ ++ A + +A I RG
Sbjct: 120 SEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-T 178
Query: 347 NVMLCGGSDAAVIPIGLGGFVACRALS 373
+++ GG D+A+ P G +A +S
Sbjct: 179 PLVVSGGVDSALDPWGWVSQIASGRIS 205
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 77.6 bits (190), Expect = 4e-17
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
+DP ASRP+D RDGFV+ EGA + +LE+ + A RGA+I+AE G + +AYHMT
Sbjct: 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 60
Query: 437 HPD 439
D
Sbjct: 61 KAD 63
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 72.3 bits (176), Expect = 2e-15
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPH 437
DP +A P+D G+V GEG +L+LE+ A+ RG G ++
Sbjct: 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGR 60
Query: 438 PDGDIMLGGVQDYHCF 453
P G +
Sbjct: 61 PAGLERAIRLALNDAG 76
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452
I AE G T DAYHMT PHP+G + ++
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALE 37
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGD 441
KIY E G + T DAYH+T P PDG
Sbjct: 1 KIYGEMVGYAMTCDAYHITAPVPDGR 26
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 42.1 bits (98), Expect = 3e-05
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDG 440
+IYAE G ++DA+H+TEPHP+G
Sbjct: 1 RIYAELVGFGRSADAHHITEPHPEG 25
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDG 440
KIYAE G +SDAYHMT P +G
Sbjct: 1 KIYAELVGFGMSSDAYHMTSPPENG 25
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 418 YAEFRGGSFTSDAYHMTEPHPDG 440
YAE G + DA+H+T+P DG
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDG 23
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (87), Expect = 7e-04
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 418 YAEFRGGSFTSDAYHMTEPHPDG 440
YAE G TSD M P +G
Sbjct: 1 YAEIVGYGATSDGADMVAPSGEG 23
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.61 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.47 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 98.94 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 98.8 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 98.79 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 98.73 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 98.66 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 98.61 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 98.51 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.49 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.47 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.41 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.17 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 98.17 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 96.98 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 96.72 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 96.41 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 94.12 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 93.61 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 93.55 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 89.63 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 88.28 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 87.26 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 87.03 |
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-54 Score=414.21 Aligned_cols=248 Identities=44% Similarity=0.758 Sum_probs=234.0
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
+||||||||+++|+|.++++||++|.+|+++|+++++|+.+.++..+++.|++|+....+++++.+.|||++++++.+++
T Consensus 2 rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 81 (250)
T d2gfva1 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGV 81 (250)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcce
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv 323 (454)
+||+|||+..+ ..+..++||++|++.++....+..+..+.. ....++|..++..+.|.++++|++.||++||+++|
T Consensus 82 ~Al~dAg~~~~---~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv 158 (250)
T d2gfva1 82 QAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI 158 (250)
T ss_dssp HHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCCSCEECC
T ss_pred HHHHhcCCCcc---ccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999865 677889999999999888877776666554 56678899899999999999999999999999999
Q ss_pred eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceeee
Q 012867 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (454)
Q Consensus 324 ~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaalv 403 (454)
+++|+||+.||++|+++|++|+||++||||+|..++|..+.+|..+++||..+++|+++|||||+++|||++|||+|+||
T Consensus 159 ~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGaa~lV 238 (250)
T d2gfva1 159 ATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 238 (250)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEEEEEE
T ss_pred ccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCCCCEeeeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred hHHhHHHhhccc
Q 012867 404 LEELEHAKKRGA 415 (454)
Q Consensus 404 Le~l~~A~~~G~ 415 (454)
||++++|++||+
T Consensus 239 LE~~~~A~~rGA 250 (250)
T d2gfva1 239 LEEYEHAKKRGA 250 (250)
T ss_dssp EEEHHHHHHHTC
T ss_pred ECcHHHHHHCcC
Confidence 999999999985
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9e-54 Score=411.21 Aligned_cols=248 Identities=43% Similarity=0.783 Sum_probs=229.4
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|+||||||||+++|+|.++++||++|.+|+++|.++++|+...++..+.+.+ ++++..++++++.+.|||+++++++++
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~aa 79 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAA 79 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccccccCCccccccc-cccccccccHHHHhhCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988888777765 455566688999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||+|||++++ .+.+.|||||+|++.++............ .+...++|+.+...+.|.++++|++.||++||+++
T Consensus 80 ~~Al~dAGl~~~---~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~Gp~~t 156 (249)
T d1j3na1 80 QLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSST 156 (249)
T ss_dssp HHHHHHHTCCGG---GSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCC
T ss_pred HHHHHHcCCChh---HcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCCCCccc
Confidence 999999999986 77888999999999999887777666554 36677899999999999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|+++|+||+.||++|+++|++|+||+|||||+|..++|..+.+|..+++|++.+..|+++|||||.++|||++|||+++|
T Consensus 157 v~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~dG~v~gEGa~~l 236 (249)
T d1j3na1 157 VVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVL 236 (249)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEE
T ss_pred cccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCCCEeeEeEEEEE
Confidence 99999999999999999999999999999999998999999999999999988888899999999999999999999999
Q ss_pred ehHHhHHHhhccc
Q 012867 403 LLEELEHAKKRGA 415 (454)
Q Consensus 403 vLe~l~~A~~~G~ 415 (454)
|||++++|++||+
T Consensus 237 vLe~~~~A~~rGA 249 (249)
T d1j3na1 237 VLEAYEHAKKRGA 249 (249)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEccHHHHHHCcC
Confidence 9999999999985
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=2.7e-52 Score=399.95 Aligned_cols=249 Identities=43% Similarity=0.759 Sum_probs=233.2
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
++||||||||+++|+|.++++||++|.+|+++|+++++|+.+.++..+.+.++.++..+.+++++.+.|||+++++++++
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999998888777799999999999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCcc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (454)
++||++||+.++ .+..++++|++|++.+....+...+..+.+ +....+++.+.....+..++++++.||++||+++
T Consensus 81 ~~Al~~Agl~~~---~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (250)
T d1e5ma1 81 QQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNC 157 (250)
T ss_dssp HHHHHHHTCCCC---TTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCEEC
T ss_pred HHHHHHcCCChH---hhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCCCCCcc
Confidence 999999999875 778899999999998888877777666654 5567788888889999999999999999999999
Q ss_pred eeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCceeeecCceee
Q 012867 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (454)
Q Consensus 323 v~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v~GEGaaal 402 (454)
|++||+||+.||++|+++|++|+||++||||+|..++|..+.+|.++++|+..+.+|+++|||||+++|||++|||+++|
T Consensus 158 v~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~dG~~~gEGa~~~ 237 (250)
T d1e5ma1 158 TVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 237 (250)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEEEE
T ss_pred ccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCCCCEeeEeeEEEE
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred ehHHhHHHhhccc
Q 012867 403 LLEELEHAKKRGA 415 (454)
Q Consensus 403 vLe~l~~A~~~G~ 415 (454)
|||++++|++||+
T Consensus 238 vLe~l~~A~~rGA 250 (250)
T d1e5ma1 238 ILEELESALARGA 250 (250)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEeeHHHHHHCcC
Confidence 9999999999985
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-48 Score=374.10 Aligned_cols=250 Identities=35% Similarity=0.547 Sum_probs=218.8
Q ss_pred cceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhc
Q 012867 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa 243 (454)
|+||||||||+++|+|.++++||++|++|+++|+++++|+...++....+.+..+ ...++..++.+.+++..++.+.++
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLD-TTGLIDRKVVRFMSDASIYAFLSM 79 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCC-CTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccccccCccccccccccc-ccccccchhhccchhhhhhhhHHH
Confidence 5789999999999999999999999999999999999988888887777776544 444467788899999999999999
Q ss_pred chhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH--HhhhccCceeccccccccchhHHhhhccCcCCCc
Q 012867 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (454)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (454)
.+|++++|+..+. .....++||++|+..++..........+. ++....+|+.++....+.++++|++.||++||++
T Consensus 80 ~~a~~~~~l~~~~--~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~Gp~~ 157 (253)
T d2vbaa1 80 EQAIADAGLSPEA--YQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157 (253)
T ss_dssp HHHHHHHTCCHHH--HTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCEE
T ss_pred HHHHHHhhccchh--ccCCCCEEEEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCccccee
Confidence 9999999998652 34567899999999888776555444433 2455678888999999999999999999999999
Q ss_pred ceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCCccCCCCceeeecCce
Q 012867 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEGAG 400 (454)
Q Consensus 322 tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rpFd~~adG~v~GEGaa 400 (454)
+|+++|+||+.||++|+++|++|+||++||||+|.+..+ .+..|.++++++.. +++|++.|||||++++||++|||++
T Consensus 158 ~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~~~~~-~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~gEGa~ 236 (253)
T d2vbaa1 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236 (253)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHH-HHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eeeccchhHHHHHHHHHHhcchhccceeeecchhhhhcc-hhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeeeeEEE
Confidence 999999999999999999999999999999999985545 56678888888754 6679999999999999999999999
Q ss_pred eeehHHhHHHhhcccee
Q 012867 401 VLLLEELEHAKKRGAKI 417 (454)
Q Consensus 401 alvLe~l~~A~~~G~~i 417 (454)
+||||++++|++||++|
T Consensus 237 ~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 237 MVVVEELEHALARGAHI 253 (253)
T ss_dssp EEEEEEHHHHHHTTCCC
T ss_pred EEEEccHHHHHHccCcC
Confidence 99999999999999986
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=2.4e-45 Score=354.02 Aligned_cols=251 Identities=39% Similarity=0.659 Sum_probs=203.1
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccC--CCC------------cccccccccccc-cCcc--ccch
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--TSF------------PTKIAAEIKSFS-TDGW--VAPK 227 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~--~~~------------~~~~~g~i~~fd-~~~f--i~~~ 227 (454)
+||||||||+++|+|.++++||++|.+|+++|++++.+++ ..+ +.++.+.++.+. +..| ...+
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHhh
Confidence 5799999999999999999999999999999999865433 333 223344444322 2222 1223
Q ss_pred hhhhhhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHH-HhhhccCceeccccccccc
Q 012867 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMG 306 (454)
Q Consensus 228 ~a~~mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 306 (454)
...++++.....+.+..+|++++++... +.....+++|.++...+............. ......+++.++..+.+++
T Consensus 81 ~~~~~~~~~~~a~~a~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (270)
T d2ix4a1 81 NSKAVANFIGYAVCAADEALRDAEWLPT--EEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMA 158 (270)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHTTCCCC--SHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhccc--cccccccceEEeeccccccccchhhcchhhhccccccCcccCcccccchh
Confidence 3455677778888899999999987532 133445667777766555544443333333 3556788888999999999
Q ss_pred hhHHhhhccCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcc-cCCCCCCCCC
Q 012867 307 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRP 385 (454)
Q Consensus 307 a~~is~~~gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~p~~~~rp 385 (454)
+++|+++||++||+++|+++|+||+.||++|+++|++|+||+|||||+|..++|..+..|..+++|+.. +++|+++|||
T Consensus 159 a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~rP 238 (270)
T d2ix4a1 159 SGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238 (270)
T ss_dssp HHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCT
T ss_pred HHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 5678999999
Q ss_pred ccCCCCceeeecCceeeehHHhHHHhhcccee
Q 012867 386 WDINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417 (454)
Q Consensus 386 Fd~~adG~v~GEGaaalvLe~l~~A~~~G~~i 417 (454)
||++++||++|||+|++|||++++|++||++|
T Consensus 239 FD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp TBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 99999999999999999999999999999986
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=6.9e-41 Score=312.01 Aligned_cols=204 Identities=23% Similarity=0.369 Sum_probs=192.6
Q ss_pred eEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcch
Q 012867 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (454)
Q Consensus 166 ~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~e 245 (454)
.|||||||+++|+|.|+++||++|++|+++|+++++|+.+.++..+.+++++|++.+++++++.+.|||++++++.+++|
T Consensus 1 ~VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (208)
T d1tqyb1 1 SVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADW 80 (208)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHHH
T ss_pred CEEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhccccccccccccccc
Confidence 38999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred hhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHH-hhhccCceeccccccccchhHHhhhccCcCCCccee
Q 012867 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324 (454)
Q Consensus 246 ALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gps~tv~ 324 (454)
||+|||++++ +....++|+++|++.++....++.+..+.. ..+..+|+.++..+.|+.+++|++.||++||+++|+
T Consensus 81 Al~~Ag~~~~---~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv~ 157 (208)
T d1tqyb1 81 ALQDAKADPE---SLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALV 157 (208)
T ss_dssp HHHHTTCCGG---GSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCEEEE
T ss_pred cchhhhcccc---cccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhcccccceeeecc
Confidence 9999999976 778889999999999999888887777654 556788888889999999999999999999999999
Q ss_pred ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhh
Q 012867 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS 373 (454)
Q Consensus 325 tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls 373 (454)
+||+||+.||++|+++|++| ||+|||||+|..++|..+.+|.++++||
T Consensus 158 tACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lS 205 (208)
T d1tqyb1 158 AEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIS 205 (208)
T ss_dssp CGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBC
T ss_pred ccccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCC
Confidence 99999999999999999999 9999999999999999999999999998
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.7e-39 Score=304.16 Aligned_cols=209 Identities=28% Similarity=0.419 Sum_probs=186.3
Q ss_pred ceEEEecccccccCCCCchhHHhhhhccccCCcccccccCCCCcccccccccccccCccccchhhhhhhHHHHHHHHhcc
Q 012867 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (454)
Q Consensus 165 ~~IaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~~~~a~~mdp~~rl~l~aa~ 244 (454)
+||||||||+++|+|.++++||++|.+|+++|+++++|+++.+...+...++.+...+.+++++.+.||+.+++++.+++
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~ 80 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAR 80 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHHH
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHHH
Confidence 58999999999999999999999999999999999999988877776665544333445999999999999999999999
Q ss_pred hhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHh-------hhccCceeccccccccchhHHhhhccCc
Q 012867 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-------YKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (454)
Q Consensus 245 eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~a~~is~~~gl~ 317 (454)
|||+|||++++ .+.+.++|+++|++.++....++.+..+... .....++.++..+++.+++++++.||++
T Consensus 81 ~Al~dAg~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~ 157 (216)
T d1tqya1 81 EAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE 157 (216)
T ss_dssp HHHHHHTCCTT---TCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHhcCCcc---ccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCcc
Confidence 99999999976 7788999999999999998888877776643 2345566677788899999999999999
Q ss_pred CCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhccc
Q 012867 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376 (454)
Q Consensus 318 Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~ 376 (454)
||+++|++||+||+.||++|+++|++|+||+|||||+|..++|..+.+|+++++||.+|
T Consensus 158 Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~~n 216 (216)
T d1tqya1 158 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216 (216)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCC
T ss_pred ccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999543
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.61 E-value=3.8e-17 Score=150.54 Aligned_cols=76 Identities=43% Similarity=0.660 Sum_probs=72.0
Q ss_pred CCCCCCCCCccCCCCceeeecCceeeehHHhHHHhhccceeeeeecCcceeccccccCCCCCCCcceecccccccc
Q 012867 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYHC 452 (454)
Q Consensus 377 ~~p~~~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~~ 452 (454)
++|+++|||||+++|||++|||++++|||++++|++||++||++|+|+++++|+++.+.++|++.++.++|+++++
T Consensus 1 ~~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~ 76 (205)
T d1tqya2 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALD 76 (205)
T ss_dssp SCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHh
Confidence 4699999999999999999999999999999999999999999999999999999999999999998888887763
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.47 E-value=3.2e-15 Score=136.19 Aligned_cols=71 Identities=31% Similarity=0.469 Sum_probs=61.7
Q ss_pred CCCCCCCCccCCCCceeeecCceeeehHHhHHHhhccc-eeeeeecCcceeccccccCCCCCCCcceeccccccc
Q 012867 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGDIMLGGVQDYH 451 (454)
Q Consensus 378 ~p~~~~rpFd~~adG~v~GEGaaalvLe~l~~A~~~G~-~i~a~I~G~a~~~Dg~~~t~P~p~g~g~~~a~~~~~ 451 (454)
+|+++|||||+++|||++|||++++|||++++|++||+ +||++|.|+++++|+.+.+ ++|. ++.++|++++
T Consensus 1 ~p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~-~~~~--g~~~~i~~aL 72 (194)
T d1tqyb2 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS-GRPA--GLERAIRLAL 72 (194)
T ss_dssp CGGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTC-CCCC--SHHHHHHHHH
T ss_pred CCCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeecccccccccccc-cchh--hhhhhhhhhc
Confidence 48899999999999999999999999999999999998 6999999999999997654 3444 4567777665
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=4e-11 Score=106.69 Aligned_cols=118 Identities=19% Similarity=0.301 Sum_probs=88.5
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+++.+||+++|++++ +++ -|++++..+++ .....+..|...|
T Consensus 51 ~~~la~~Aa~~al~~a~~~~~---~Id----~li~~s~~~~~-------------------------~~P~~a~~v~~~L 98 (174)
T d1hnja1 51 VSTMGFEAATRAIEMAGIEKD---QIG----LIVVATTSATH-------------------------AFPSAACQIQSML 98 (174)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCSC-------------------------SSSCHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhcccccc---ccc----EEEEecCCccc-------------------------cccchhhhhhhcc
Confidence 346899999999999999876 333 45666653221 2233578899999
Q ss_pred cCcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 315 gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
|++. +++.|..+|++++.||+.|..+|++|..+.+|+.++|.. +. .+. ++.....+
T Consensus 99 gl~~~~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~-S~----------~~~------------~~d~~~~~ 155 (174)
T d1hnja1 99 GIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-AR----------TCD------------PTDRGTII 155 (174)
T ss_dssp TCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH-HH----------HSC------------TTCHHHHT
T ss_pred CCCchhhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehh-hc----------ccC------------CCCCCeEE
Confidence 9985 788899999999999999999999999999999999862 11 011 11122356
Q ss_pred eeecCceeeehHHh
Q 012867 394 VMGEGAGVLLLEEL 407 (454)
Q Consensus 394 v~GEGaaalvLe~l 407 (454)
++|||++++||++.
T Consensus 156 lfGDgA~A~vl~~~ 169 (174)
T d1hnja1 156 IFGDGAGAAVLAAS 169 (174)
T ss_dssp TBCCEEEEEEEEEE
T ss_pred EeceeeEEEEEEeC
Confidence 78999999999864
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=98.79 E-value=2.8e-10 Score=101.80 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=87.5
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|..+|+.+||+++|++++ +++ .|++++..+++ .....+..|...+
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~~---dId----~li~~s~~~~~-------------------------~~p~~a~~v~~~l 105 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDPA---EID----LVVVSTMTNFV-------------------------HTPPLSVAIAHEL 105 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCCC-------------------------CSSCHHHHHHHHH
T ss_pred HHHHhHHHHHhhhhhccCChh---HCe----EEEEeccCCcc-------------------------ccccHHHHHHHhh
Confidence 356899999999999999875 332 45555543221 1233467788888
Q ss_pred cCcC-CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCce
Q 012867 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (454)
Q Consensus 315 gl~G-ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~ 393 (454)
+... +++.|..+|++++.||+.|..+|++|....+|+.++|.. ++ .+ .++.....+
T Consensus 106 ~~~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~-s~----------~~------------~~~d~~~~~ 162 (181)
T d1mzja1 106 GADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TD----------VI------------DLADRSLSF 162 (181)
T ss_dssp TCTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GG----------GS------------CSSCTTTTT
T ss_pred cCCCccceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccc-cc----------cC------------CCCCcceEE
Confidence 8854 788999999999999999999999999999999999862 11 01 122234567
Q ss_pred eeecCceeeehHH
Q 012867 394 VMGEGAGVLLLEE 406 (454)
Q Consensus 394 v~GEGaaalvLe~ 406 (454)
++||||+++||++
T Consensus 163 lfGDGAaA~ll~~ 175 (181)
T d1mzja1 163 LFGDGAGAAVVGP 175 (181)
T ss_dssp TBCEEEEEEEEEE
T ss_pred EeeeeeEEEEEEe
Confidence 8999999999986
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=2.6e-10 Score=101.15 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=88.7
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|..+++.+||+++|++++ +++ .|++.+..++ ......+..|...|
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~~---dId----lli~~s~t~~-------------------------~~~p~~a~~v~~~L 96 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGALE---GVD----AVIVATNTPD-------------------------ALFPDTAALVQARF 96 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTTT---TEE----EEEEECSSCS-------------------------EEESCHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhcCcccc---cce----EEEEeccccc-------------------------ccccchHHHHHHHh
Confidence 446888999999999999875 222 3555544221 12233477889999
Q ss_pred cCcCCCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCCCcee
Q 012867 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (454)
Q Consensus 315 gl~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~adG~v 394 (454)
|.+.+.+.|..+|++.+.+|+.|..+|++|....+|+.++|.. |. .--|+.....++
T Consensus 97 g~~~~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~---------------S~--------~~~~~d~~~~~l 153 (172)
T d1ub7a1 97 GLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL---------------SK--------IIDWNDRATAVL 153 (172)
T ss_dssp TCCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG---------------GG--------TSCTTCHHHHTT
T ss_pred ccCccceeehhccccHHHHHHHHhhhhhcCCcceeEEeccccc---------------cc--------ccCCCCcCeEEE
Confidence 9988999999999999999999999999999999999999862 21 001222334667
Q ss_pred eecCceeeehHHh
Q 012867 395 MGEGAGVLLLEEL 407 (454)
Q Consensus 395 ~GEGaaalvLe~l 407 (454)
+|||++++||++.
T Consensus 154 fGDgAaA~ll~~~ 166 (172)
T d1ub7a1 154 FGDGGGAAVVGKV 166 (172)
T ss_dssp BCCEEEEEEEECC
T ss_pred ecceeEEEEEEEc
Confidence 8999999999864
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.66 E-value=2.9e-09 Score=105.41 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=111.6
Q ss_pred cceEEEecccccccCC-CCchhHHhhhhccc---cCCccccc-ccCCCCccccccccccccc--Ccc--ccchhhhh---
Q 012867 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGV---SGISEIET-FDCTSFPTKIAAEIKSFST--DGW--VAPKLSKR--- 231 (454)
Q Consensus 164 ~~~IaItGmg~~~P~g-~~~~~~w~~L~~G~---s~i~~~~~-~~~~~~~~~~~g~i~~fd~--~~f--i~~~~a~~--- 231 (454)
....+|+|+|..+|.- .+-+++++.+..-. .....+.+ +...+...++.. .++.|. ..+ .++...++
T Consensus 9 ~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~-~~~~~~~~~~~~~~~~~~~~r~~~ 87 (372)
T d1teda_ 9 TTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMA-VDPLDAKFDVFRREPATIRDRMHL 87 (372)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECS-SCTTSTTHHHHTTCSSCHHHHHHH
T ss_pred CceEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCccccee-ccccccchhhhhhcCCCHHHHHHH
Confidence 3456899999999987 66777777764321 11111110 111222222111 011110 001 11222222
Q ss_pred -hhHHHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHH
Q 012867 232 -MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (454)
Q Consensus 232 -mdp~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~i 310 (454)
......|+.+|+.+||+++|++++ +++ -|+++++. ++ .....+.+|
T Consensus 88 ~~e~~~~la~~Aa~~aL~~ag~~~~---dId----~lI~~t~t-~~-------------------------~~P~~a~~v 134 (372)
T d1teda_ 88 FYEHAVPLAVDVSKRALAGLPYRAA---EIG----LLVLATST-GF-------------------------IAPGVDVAI 134 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGG---GEE----EEEEEESS-CC-------------------------CSSCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccC-CC-------------------------CCchHHHHH
Confidence 233557999999999999999985 222 34444432 22 112357889
Q ss_pred hhhccCcCCC--ccee-ccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCcc
Q 012867 311 AMDLGWMGPN--YSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (454)
Q Consensus 311 s~~~gl~Gps--~tv~-tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd 387 (454)
+..+|++... +.+. .||++++.||..|..+|++|..+.+||.++|.+.. . +. . .+ -++
T Consensus 135 ~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~-~-~~--------~-----~d----~~~ 195 (372)
T d1teda_ 135 VKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSV-N-AV--------F-----AD----DIN 195 (372)
T ss_dssp HHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG-G-CC--------C-----CS----SHH
T ss_pred HhhhccCCceeEeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhcc-c-cc--------C-----CC----cch
Confidence 9999998643 3343 48999999999999999999999999999986210 0 00 0 00 011
Q ss_pred CCCCceeeecCceeeehHHh
Q 012867 388 INRDGFVMGEGAGVLLLEEL 407 (454)
Q Consensus 388 ~~adG~v~GEGaaalvLe~l 407 (454)
..-..+++|||++++||++.
T Consensus 196 ~~~~~~lfGDGAaA~ll~~~ 215 (372)
T d1teda_ 196 DVVIHSLFGDGCAALVIGAS 215 (372)
T ss_dssp HHHHHHHBCEEEEEEEEEEE
T ss_pred hhhhhhhhcccceeEEeccC
Confidence 11234578999999999864
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.61 E-value=1.6e-09 Score=98.22 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+++||+++|++++ +++ .|++.++. ++ .+ ...+..+...+
T Consensus 75 a~~la~~Aa~~aL~~ag~~~~---dId----~lI~~s~t-~~------------------------~~-P~~aa~v~~~l 121 (200)
T d1u0ma1 75 AKSRVPAVIQRALDDAELLAT---DID----VIIYVSCT-GF------------------------MM-PSLTAWLINEM 121 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCS----EEEEECSS-SC------------------------CS-SCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCChh---hhh----eEEEeccC-CC------------------------Cc-chhHHHHHHHH
Confidence 456999999999999999975 222 34444432 11 11 23567888999
Q ss_pred cCcCC--Ccce-eccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCCCCCCccCCC-
Q 012867 315 GWMGP--NYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR- 390 (454)
Q Consensus 315 gl~Gp--s~tv-~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~~~rpFd~~a- 390 (454)
|+... .+.+ ..+|++++.+|+.|..+|+.|..+.+||.++|.+ |. ..+|-|.+.
T Consensus 122 g~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~---------------S~-------~~~~~d~~~~ 179 (200)
T d1u0ma1 122 GFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFC---------------SL-------CYQPTDLGVG 179 (200)
T ss_dssp TCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEG---------------GG-------GCCTTCCSHH
T ss_pred hcCCCeeEeccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEecc---------------cc-------ccCCCCCChh
Confidence 98764 3454 4799999999999999999999999999999862 10 111212111
Q ss_pred ---CceeeecCceeeehHH
Q 012867 391 ---DGFVMGEGAGVLLLEE 406 (454)
Q Consensus 391 ---dG~v~GEGaaalvLe~ 406 (454)
...++|||++++||..
T Consensus 180 ~~~~~~lFgDGAaA~ll~~ 198 (200)
T d1u0ma1 180 SLLCNGLFGDGIAAAVVRG 198 (200)
T ss_dssp HHHHHHHBCEEEEEEEEET
T ss_pred hhhcccccccccEEEEEec
Confidence 2346899999999964
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.51 E-value=9.6e-09 Score=95.32 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=65.8
Q ss_pred HHHHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhc
Q 012867 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (454)
Q Consensus 235 ~~rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~ 314 (454)
...|+.+|+.+||+++|++++ +++ .|++.++.+.+ .+. ....+.+.+
T Consensus 102 ~~~la~~Aa~~aL~~a~~~~~---dId----~lI~~t~t~~~-------------------------~p~-~~a~~~~~l 148 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQPKS---KIT----HLIVCTTSGVD-------------------------MPG-ADYQLTKLL 148 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSCCC-------------------------SSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChh---HCc----EEEEecccCCc-------------------------cCc-cHHHHHHHH
Confidence 456999999999999999975 222 45555553211 111 244566667
Q ss_pred cCcCCC--c-ceeccccccceeeeccccceeccccceEeecCCCc
Q 012867 315 GWMGPN--Y-SISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356 (454)
Q Consensus 315 gl~Gps--~-tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~ 356 (454)
++.... + .+..+|++++.+|..|.++|+.|..+.+||.++|.
T Consensus 149 ~~~~~~~~~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~ 193 (235)
T d1bi5a1 149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEV 193 (235)
T ss_dssp TCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEEC
T ss_pred hcCCCceEEeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeee
Confidence 765543 3 34678999999999999999999999999999996
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.49 E-value=6.2e-09 Score=98.50 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=73.6
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
.|+..+..++|+++|++++ .++ .|++|+.... .....++..++...|+
T Consensus 29 dL~~~~~~~~l~~~~i~~~---~Id----~vi~G~~~~~-------------------------~~~~n~ar~~al~agl 76 (268)
T d1m3ka1 29 ELGATVISAVLERAGVAAG---EVN----EVILGQVLPA-------------------------GEGQNPARQAAMKAGV 76 (268)
T ss_dssp HHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCT-------------------------TSCSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHH---HCc----EEEEeecccc-------------------------CcchHHHhHHHHHhCC
Confidence 4778899999999999987 444 6889876311 1122356677777888
Q ss_pred c--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 317 M--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 317 ~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
. =|.++|+..|+||+.||++|++.|+.|++|++|+||+|.+..
T Consensus 77 p~~vpa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS~ 121 (268)
T d1m3ka1 77 PQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSM 121 (268)
T ss_dssp CTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTT
T ss_pred cccccceeecccCcccchHHHHHHHHHhCCCceEEeecccccccc
Confidence 4 378999999999999999999999999999999999998653
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=7.8e-09 Score=98.11 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=72.8
Q ss_pred HHHHHhcchhhhcCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhccC
Q 012867 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (454)
Q Consensus 237 rl~l~aa~eALedAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 316 (454)
.|+..+++++|+++|++++ .++ .|++|+..... .....++..++...|+
T Consensus 26 dL~~~a~~~al~~~~i~~~---~Id----~vi~G~v~~~g------------------------~~~~n~aR~~al~aGl 74 (273)
T d1ulqa1 26 DLLAHALSVLVDRSGVPKE---EVE----DVYAGCANQAG------------------------EDNRNVARMALLLAGF 74 (273)
T ss_dssp HHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCSS------------------------TTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccc------------------------cccccHHHHHHHHcCC
Confidence 3677899999999999987 444 68999763211 1112246666777777
Q ss_pred c--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 317 M--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 317 ~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
- =|.++|+.+|+||+.||++|++.|+.|+.|++|+||+|.+..
T Consensus 75 p~~vp~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS~ 119 (273)
T d1ulqa1 75 PVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119 (273)
T ss_dssp CTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSS
T ss_pred CCccceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccccch
Confidence 3 388999999999999999999999999999999999998653
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.41 E-value=1.8e-08 Score=94.91 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=71.2
Q ss_pred HHHHHhcchhhh-cCCccHHHHhhhhccccceeeecccCcchhhHHHHHHHHHhhhccCceeccccccccchhHHhhhcc
Q 012867 237 LYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (454)
Q Consensus 237 rl~l~aa~eALe-dAG~~~~~~~~~~~~~vGV~vG~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~is~~~g 315 (454)
.|+..+.+++|+ ++|++++ .++ .|++|....... ....++..++...|
T Consensus 32 dL~~~~i~~~l~r~agi~~~---~Id----~vi~G~v~~~~~------------------------~g~n~aR~~al~ag 80 (262)
T d1wdkc1 32 DMSAHLISKVLERNSKVDPG---EVE----DVIWGCVNQTLE------------------------QGWNIARMASLMTQ 80 (262)
T ss_dssp HHHHHHHHHHHHHCTTSCGG---GEE----EEEEECSSBSBT------------------------TTTTHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCCCCHH---Hee----EEEEEeeccccc------------------------ccccchhhhHhhhh
Confidence 577788899998 6999987 444 688887632111 11124556666666
Q ss_pred Cc--CCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 316 l~--Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
+- =|.++|+..|+||+.||++|++.|+.|+.|++|+||+|.+..
T Consensus 81 ~p~~vp~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~ 126 (262)
T d1wdkc1 81 IPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGH 126 (262)
T ss_dssp SCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTT
T ss_pred cccccchhhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccc
Confidence 63 388999999999999999999999999999999999998654
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=1.2e-07 Score=89.39 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=47.4
Q ss_pred chhHHhhhccC--cCCCcceeccccccceeeeccccceeccccceEeecCCCceee
Q 012867 306 GSAMLAMDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (454)
Q Consensus 306 ~a~~is~~~gl--~Gps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~ 359 (454)
++..++..-|+ .-|.++|+..|+||+.||+.|++.|+.|+.|++|+||+|.|..
T Consensus 78 ~aR~~al~aglp~~vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS~ 133 (269)
T d1afwa1 78 EHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTN 133 (269)
T ss_dssp HHHHHHHHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHH
T ss_pred cchhhhhhccccccccchhccccchHHHHHHHHHHHHHhhccccceeeeecccccc
Confidence 35666666776 4599999999999999999999999999999999999998754
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=98.17 E-value=4.4e-08 Score=85.75 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=60.4
Q ss_pred ccchhHHhhhccCcC--CCcceeccccccceeeeccccceeccccceEeecCCCceeeeecccchhhhhhhhcccCCCCC
Q 012867 304 NMGSAMLAMDLGWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTK 381 (454)
Q Consensus 304 ~~~a~~is~~~gl~G--ps~tv~tACsSsl~AI~~A~~~I~~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~p~~ 381 (454)
...+..+...+|+.. ..+.|..+|++++.||+.|..+|++|....+||.+.|... ..
T Consensus 85 p~~a~~v~~~lg~~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~~-~~-------------------- 143 (166)
T d1xpma1 85 KAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTAR-YG-------------------- 143 (166)
T ss_dssp SCHHHHHHHHTTCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEEC-CC--------------------
T ss_pred chhHHHHHHhhccccceEEeeecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceEe-cc--------------------
Confidence 345788889999865 5688999999999999999999999999999999988511 00
Q ss_pred CCCCccCCCCceeeecCceeeehHH
Q 012867 382 ASRPWDINRDGFVMGEGAGVLLLEE 406 (454)
Q Consensus 382 ~~rpFd~~adG~v~GEGaaalvLe~ 406 (454)
++ ..+-+.+|+|++++||++
T Consensus 144 ----~~-~~~~~~fGDGA~A~ll~~ 163 (166)
T d1xpma1 144 ----LN-SGGEPTQGAGAVAMVIAH 163 (166)
T ss_dssp ----TT-CSSGGGCEEEEEEEEEEE
T ss_pred ----CC-CCCCccCCCeeEEEEEec
Confidence 00 112256899999999975
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=96.98 E-value=3.5e-05 Score=58.75 Aligned_cols=45 Identities=9% Similarity=-0.077 Sum_probs=42.0
Q ss_pred CCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 76 GSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 76 ~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
..+.+|.++ +|||.++|++++++..+|+. + |++.+|+| ||+..|+
T Consensus 27 d~d~~f~dlG~DSl~~~el~~~le~~~g~~-l----~~~~~~~~-~Ti~~l~ 72 (82)
T d1or5a_ 27 ELDTPFVDLGYDSLALLETAAVLQQRYGIA-L----TDETVGRL-GTPRELL 72 (82)
T ss_dssp CSSSCHHHHSCCHHHHHHHHHHHHTTSCCC-C----SHHHHHHC-CCSHHHH
T ss_pred CcCcCHHHcCCChHhHHHHHHHHHHHHhCc-C----CHHHHHcC-CCHHHHH
Confidence 457889999 99999999999999999998 8 99999999 9999988
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=96.72 E-value=0.00011 Score=56.30 Aligned_cols=51 Identities=10% Similarity=-0.158 Sum_probs=45.0
Q ss_pred ceecccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 70 LVSSFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 70 ~~~~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
........+..|.++ +|||.++++.++++..+|+. + |++.+|+| ||++.|+
T Consensus 24 ~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~-l----~~~~~~~~-~Tv~~l~ 75 (86)
T d2af8a_ 24 TDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVS-I----PDDVAGRV-DTPRELL 75 (86)
T ss_dssp CCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCC-C----CCSTTTTC-CCHHHHH
T ss_pred CCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccC-c----CHHHHHcC-CCHHHHH
Confidence 444455568899999 99999999999999999998 7 99999999 9999888
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=96.41 E-value=0.00012 Score=57.27 Aligned_cols=48 Identities=8% Similarity=-0.008 Sum_probs=43.1
Q ss_pred cccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 73 SFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 73 ~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.....+..|.++ +|||.++|+.++++...|+. + |++.+|+| ||++.|+
T Consensus 26 ~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~-l----~~~~~~~~-~Ti~~l~ 74 (95)
T d1nq4a_ 26 GGDVEDVAFDALGYDSLALLNTVGRIERDYGVQ-L----GDDAVEKA-TTPRALI 74 (95)
T ss_dssp CSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC-S----CTTHHHHC-CSHHHHH
T ss_pred hhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCC-C----CHHHHhcC-CCHHHHH
Confidence 334467899999 99999999999999999998 7 89999999 9999988
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.12 E-value=0.0014 Score=52.57 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=42.3
Q ss_pred ceecccCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 70 LVSSFSGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 70 ~~~~~~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
+.......+..| .++ +|||..+++.+.+....|+. + +.+.+|++ +|...|+
T Consensus 22 ~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~-i----~~~~~~~~-~Tv~~l~ 74 (115)
T d1klpa_ 22 IEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVK-I----PDEDLAGL-RTVGDVV 74 (115)
T ss_dssp CCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCC-C----CHHHHTTC-CSHHHHH
T ss_pred CCccccCcccchhhhcccchhHHHHHHHHHHHHHCCC-C----CHHHHHhC-ccHHHHH
Confidence 344444556666 479 99999999999999999998 7 88899999 9998888
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=93.61 E-value=0.0029 Score=46.85 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=41.1
Q ss_pred cCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.+.++.|.++ +|||+++++.++++...|+. + +.+.+|+| ||...|+
T Consensus 25 i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~-l----~~~~l~~~-pTi~~LA 71 (76)
T d2gdwa1 25 IGILDNFFQIGGHSLKAMAVAAQVHREYQVE-L----PLKVLFAQ-PTIKALA 71 (76)
T ss_dssp CCTTTTSSTTTCTTHHHHHHHHHHHHTTSSC-C----TTHHHHHS-CSHHHHH
T ss_pred CCCCCCHHHcCCChHHHHHHHHHHHHHHCCC-C----CHHHHHcC-CCHHHHH
Confidence 3457888999 99999999999999999988 7 88999999 9988887
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.55 E-value=0.0046 Score=45.75 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=38.1
Q ss_pred cccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 73 SFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 73 ~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
...+.+..|.++ +|||+++|+++|++..+|+. + +.+-+| + +|-..|+
T Consensus 23 ~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~-l----~~~~l~-~-~Ti~~L~ 70 (76)
T d2pnga1 23 AGINLDSSLADLGLDSLMGVEVRQILEREHDLV-L----PIREVR-Q-LTLRKLQ 70 (76)
T ss_dssp TTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCC-C----CHHHHT-T-CCSHHHH
T ss_pred hhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCC-C----CHHHHH-H-hhHHHHH
Confidence 445678999999 99999999999999999998 6 776655 4 6655554
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=89.63 E-value=0.017 Score=42.17 Aligned_cols=48 Identities=8% Similarity=-0.153 Sum_probs=39.1
Q ss_pred cccCCCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 73 SFSGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 73 ~~~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.....+..| .++ +|||..+|+.+.++..+|++ + |.+.+|++ +|...++
T Consensus 21 ~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~-i----~~~~~~~~-~Tv~~l~ 70 (74)
T d1f80d_ 21 ADVKLEASFKEDLGADXLDVVELVMELEDEFDME-I----SDEDAEKI-ATVGDAV 70 (74)
T ss_dssp SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC-C----CHHHHHHC-CBHHHHH
T ss_pred HHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCC-C----CHHHHhcC-CCHHHHH
Confidence 334456667 479 99999999999999999998 7 88888888 7876665
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=88.28 E-value=0.02 Score=42.74 Aligned_cols=48 Identities=6% Similarity=-0.057 Sum_probs=41.5
Q ss_pred cccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccCCCCcccch
Q 012867 73 SFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (454)
Q Consensus 73 ~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (454)
.....+..|.++ +|||..+++.++++...|+. + |.+.+|++ +|...++
T Consensus 26 ~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~-i----~~~~~~~~-~Tv~~l~ 74 (85)
T d1vkua_ 26 ETVDEENTFKELGFDSIDVIDLVMFFEDEFALR-I----EDEEISKI-RKVKDLI 74 (85)
T ss_dssp CSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCC-C----CHHHHTTC-CBHHHHH
T ss_pred HHCCCCCCHHHhcCcchHHHHHHHHHHHHccCC-C----CHHHHHHc-CCHHHHH
Confidence 344567889999 99999999999999999997 7 88889998 8887776
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.26 E-value=0.03 Score=41.70 Aligned_cols=49 Identities=6% Similarity=-0.056 Sum_probs=40.7
Q ss_pred cccCCCchhhHh-hhccccCccchhhhhcCCCccccCCCCccccccC-CCCcccch
Q 012867 73 SFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGS-NNSTATLN 126 (454)
Q Consensus 73 ~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~-~ptp~~la 126 (454)
...+.++.|.++ +|||.++|+.++++...|+. + |...+|.+ -+|...|+
T Consensus 20 ~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~-i----~~~~l~~~~~~Ti~~la 70 (83)
T d2jq4a1 20 DTIADEADLYAAGLSSFASVQLMLGIEEAFDIE-F----PDNLLNRKSFASIKAIE 70 (83)
T ss_dssp GGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCC-C----CHHHHSSGGGGCHHHHH
T ss_pred HHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCC-C----CHHHHHHHHHhhHHHHH
Confidence 445678889999 99999999999999999998 6 77777863 27877777
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=87.03 E-value=0.046 Score=40.33 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=36.0
Q ss_pred CCchh-hHh-hhccccCccchhhhhcCCCccccCCCCccccc--cCCCCcccch
Q 012867 77 SSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFF--GSNNSTATLN 126 (454)
Q Consensus 77 ~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F--~~~ptp~~la 126 (454)
.+..| .++ +|||..+|+.++++...|+. + |++-+| ++ +|+..++
T Consensus 26 ~d~~l~e~gglDSl~~vel~~~ie~~fgi~-i----~~~~l~~~~~-~Tv~~l~ 73 (80)
T d1dv5a_ 26 LDLNLFETGLLDSMGTVQLLLELQSQFGVD-A----PVSEFDRKEW-DTPNKII 73 (80)
T ss_dssp SSCCSSTTSSCCSHHHHHHHHHHTTTSCCC-C----CCSSCCTTTT-TSHHHHH
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHCCC-C----CHHHhhHHhC-CCHHHHH
Confidence 34445 455 89999999999999999998 7 888888 46 8888777
|