Query 012868
Match_columns 454
No_of_seqs 123 out of 1333
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 3.1E-96 7E-101 784.9 47.7 443 5-453 53-509 (545)
2 PRK00013 groEL chaperonin GroE 100.0 5.8E-96 1E-100 780.6 48.4 447 5-453 52-508 (542)
3 PRK12849 groEL chaperonin GroE 100.0 9.8E-96 2E-100 778.9 48.2 442 5-453 52-507 (542)
4 PRK14104 chaperonin GroEL; Pro 100.0 6.2E-96 1E-100 781.0 46.7 443 5-453 53-509 (546)
5 PTZ00114 Heat shock protein 60 100.0 1.7E-95 4E-100 780.2 47.2 443 5-453 64-524 (555)
6 cd03344 GroEL GroEL_like type 100.0 5.6E-95 1.2E-99 770.8 48.6 446 5-453 50-505 (520)
7 TIGR02348 GroEL chaperonin Gro 100.0 5E-95 1.1E-99 772.4 48.1 446 5-453 51-506 (524)
8 CHL00093 groEL chaperonin GroE 100.0 2.8E-95 6E-100 775.1 46.1 445 5-453 52-509 (529)
9 PRK12850 groEL chaperonin GroE 100.0 1.2E-94 2.7E-99 771.3 47.9 446 5-453 53-508 (544)
10 PLN03167 Chaperonin-60 beta su 100.0 8.1E-95 1.7E-99 777.2 45.5 446 5-453 108-565 (600)
11 PRK12851 groEL chaperonin GroE 100.0 3.7E-94 8E-99 767.2 47.5 446 5-453 53-508 (541)
12 KOG0356 Mitochondrial chaperon 100.0 1.2E-88 2.5E-93 690.0 33.0 442 7-453 68-521 (550)
13 COG0459 GroL Chaperonin GroEL 100.0 2.2E-78 4.7E-83 639.1 22.4 419 6-453 54-498 (524)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.3E-76 5E-81 624.7 33.6 382 5-453 54-467 (484)
15 cd03343 cpn60 cpn60 chaperonin 100.0 2.7E-75 5.8E-80 622.3 38.8 388 5-453 57-501 (517)
16 TIGR02347 chap_CCT_zeta T-comp 100.0 3.1E-75 6.6E-80 621.4 39.2 388 5-453 58-510 (531)
17 TIGR02339 thermosome_arch ther 100.0 7.9E-75 1.7E-79 618.6 38.6 388 5-453 58-504 (519)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.9E-74 4.1E-79 616.5 37.5 393 5-453 50-510 (527)
19 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.4E-74 3E-79 616.4 34.9 395 5-453 50-500 (515)
20 TIGR02342 chap_CCT_delta T-com 100.0 2.8E-74 6.1E-79 613.6 36.2 394 5-453 51-501 (517)
21 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.6E-74 7.7E-79 614.2 36.3 394 5-453 65-512 (526)
22 TIGR02340 chap_CCT_alpha T-com 100.0 6.5E-74 1.4E-78 613.2 37.9 393 5-453 54-514 (536)
23 TIGR02343 chap_CCT_epsi T-comp 100.0 1.2E-73 2.5E-78 610.2 37.1 394 5-453 69-516 (532)
24 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.1E-73 6.7E-78 606.7 38.4 391 5-453 58-504 (522)
25 TIGR02346 chap_CCT_theta T-com 100.0 6.2E-74 1.3E-78 612.1 32.9 395 5-453 60-504 (531)
26 TIGR02345 chap_CCT_eta T-compl 100.0 4.3E-73 9.3E-78 605.1 36.7 391 5-453 59-504 (522)
27 TIGR02344 chap_CCT_gamma T-com 100.0 7E-73 1.5E-77 604.4 36.3 388 5-453 58-506 (525)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2E-72 4.4E-77 599.3 38.8 387 5-453 57-498 (517)
29 PTZ00212 T-complex protein 1 s 100.0 1.7E-72 3.6E-77 601.7 33.0 387 5-453 69-510 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 6.9E-72 1.5E-76 590.3 33.8 371 5-453 58-465 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 1.5E-71 3.2E-76 592.4 35.5 387 5-453 58-499 (519)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.4E-70 5.1E-75 577.5 35.0 373 5-453 50-456 (472)
33 cd00309 chaperonin_type_I_II c 100.0 9E-70 2E-74 572.9 38.2 371 5-453 50-450 (464)
34 KOG0361 Chaperonin complex com 100.0 6E-70 1.3E-74 530.6 24.1 390 6-453 63-507 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.1E-64 2.4E-69 536.4 35.0 388 5-453 31-468 (485)
36 KOG0358 Chaperonin complex com 100.0 4.3E-65 9.3E-70 495.8 21.3 400 6-453 69-518 (534)
37 KOG0363 Chaperonin complex com 100.0 7.9E-63 1.7E-67 478.0 27.8 386 6-453 63-503 (527)
38 KOG0362 Chaperonin complex com 100.0 1.4E-56 3E-61 449.6 29.9 394 5-453 68-505 (537)
39 KOG0360 Chaperonin complex com 100.0 1.1E-57 2.3E-62 454.9 21.4 392 6-454 62-521 (545)
40 KOG0359 Chaperonin complex com 100.0 3.4E-56 7.5E-61 439.8 20.6 387 5-453 59-499 (520)
41 KOG0364 Chaperonin complex com 100.0 1E-54 2.3E-59 429.8 20.2 387 6-453 62-505 (527)
42 KOG0357 Chaperonin complex com 100.0 2.2E-52 4.7E-57 402.1 15.2 293 15-453 71-380 (400)
43 cd03333 chaperonin_like chaper 100.0 1.5E-27 3.2E-32 226.2 20.7 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 5.4E-25 1.2E-29 215.4 21.6 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.7 1.8E-07 3.9E-12 106.4 14.8 205 110-369 336-578 (1598)
46 COG0459 GroL Chaperonin GroEL 97.4 0.00032 7E-09 75.4 6.6 89 186-290 259-354 (524)
47 PTZ00212 T-complex protein 1 s 46.3 39 0.00085 36.7 5.9 45 116-160 178-223 (533)
48 TIGR02345 chap_CCT_eta T-compl 45.5 7.5 0.00016 42.1 0.2 61 195-256 245-314 (522)
49 PRK13600 putative ribosomal pr 43.1 89 0.0019 25.3 6.0 53 190-252 22-74 (84)
50 PF01985 CRS1_YhbY: CRS1 / Yhb 32.2 1.3E+02 0.0028 24.0 5.5 67 188-256 7-75 (84)
51 TIGR02341 chap_CCT_beta T-comp 31.3 1E+02 0.0022 33.4 6.2 44 116-160 167-212 (519)
52 PRK10343 RNA-binding protein Y 30.5 2.9E+02 0.0063 23.0 7.3 68 187-256 8-77 (97)
53 smart00574 POX domain associat 28.8 92 0.002 27.7 4.3 42 336-377 84-126 (140)
54 COG3962 Acetolactate synthase 25.9 32 0.0007 36.6 1.1 37 343-379 217-253 (617)
55 PF00205 TPP_enzyme_M: Thiamin 24.0 1.2E+02 0.0025 26.1 4.2 60 188-273 3-63 (137)
56 PF04312 DUF460: Protein of un 23.6 1.1E+02 0.0024 27.2 3.8 42 187-257 66-107 (138)
57 PRK11058 GTPase HflX; Provisio 23.5 2.5E+02 0.0053 29.7 7.2 18 239-256 27-44 (426)
58 PRK00153 hypothetical protein; 23.3 3.9E+02 0.0085 22.1 7.1 33 297-334 10-48 (104)
59 PRK06683 hypothetical protein; 22.5 2.1E+02 0.0044 22.9 5.0 53 190-252 20-72 (82)
60 TIGR00103 DNA_YbaB_EbfC DNA-bi 22.3 4.6E+02 0.0099 21.8 7.4 23 312-334 22-50 (102)
61 PF07526 POX: Associated with 21.0 1.3E+02 0.0027 26.8 3.7 41 337-377 85-126 (140)
62 PF07131 DUF1382: Protein of u 20.5 2.8E+02 0.0061 20.9 4.8 52 64-118 4-55 (61)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.1e-96 Score=784.90 Aligned_cols=443 Identities=37% Similarity=0.573 Sum_probs=425.6
Q ss_pred HHHHhhhcccc----CccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (454)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~ 79 (454)
..||||+|++. ||.+|++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46999999995 8888887 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccc
Q 012868 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (454)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~ 159 (454)
++++|++++.|+++.+++.++|++|+++++.+++++++|+.++++++.|+++.|+++.+++++++|++|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999988778999999999989999999999999999989999999888767899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchh
Q 012868 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (454)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (454)
+++++..++++|+|+++|.+|+++++++|+|+.+.++|+||||++++|++++|++|+.|+++|.++|++||+|+||++|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012868 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (454)
Q Consensus 240 ~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~ 315 (454)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+.+++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999999776 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012868 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (454)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (454)
|||+||+|++|||+|||+|+++++|+||+++||+|++|+++++|||||||++|+++|..|++|+..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987788999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 396 L~~~~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|+.||++||+|||+|+.++ ++|++.+++++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAA 509 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHH
Confidence 9999999999999999999 99987666789999988 9999999999999999999986
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.8e-96 Score=780.61 Aligned_cols=447 Identities=38% Similarity=0.550 Sum_probs=424.2
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||++++. +.+.+++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 52 G~tIlk~i~~~hp~~~~~--akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~ 129 (542)
T PRK00013 52 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEE 129 (542)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999963333 33347899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|+++++|+++.+++.++|++|+++++.+++++++|+..++.++.|.++.+++..+++++++|++|++||.+|||.++++.
T Consensus 130 L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK00013 130 LKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEK 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccC
Confidence 99999999888899999999998899999999999999998888899877766678999999999999999999999988
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHH
Q 012868 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (454)
++.+++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+||++|+++|+
T Consensus 210 ~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK00013 210 MEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLE 289 (542)
T ss_pred CeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012868 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (454)
Q Consensus 244 dla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla 319 (454)
|||++|||++++++.+++++++++++||+|++|++++++++|++++++++.+..|+++|+++++++.+ ++|+|||+
T Consensus 290 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~ 369 (542)
T PRK00013 290 DIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999999999999999877 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 012868 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (454)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~AL~~~ 399 (454)
||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|++|++|...++++|+|+++|++||+.|
T Consensus 370 ~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 449 (542)
T PRK00013 370 KLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAP 449 (542)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999334899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 400 ~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||+||+|||+|+.++ .+|++.+++++|||+.+ ||++.|||||+.||+++|+.|+
T Consensus 450 p~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (542)
T PRK00013 450 LRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAA 508 (542)
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHH
Confidence 999999999999999 99987555679999987 9999999999999999999986
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.8e-96 Score=778.87 Aligned_cols=442 Identities=40% Similarity=0.581 Sum_probs=425.0
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (454)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~ 79 (454)
..||||+|+++|| ++|++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.
T Consensus 52 GaTIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~ 125 (542)
T PRK12849 52 GVSIAKEIELEDPFENLGAQLV------KEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHcccCCccHhHHHHHH------HHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4699999999999 67776 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccc
Q 012868 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (454)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~ 159 (454)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.|+++.|++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK12849 126 VVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccc
Confidence 99999999999988889999999999989999999999999999888889999999887899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchh
Q 012868 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (454)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (454)
+.++++.+++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+|+++|+
T Consensus 206 ~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~ 285 (542)
T PRK12849 206 DPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 285 (542)
T ss_pred cccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012868 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (454)
Q Consensus 240 ~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~ 315 (454)
++|+|||++|||+++++..+.+++++++++||+|++|++++++|+++++++++++++.|+++|++++++.++ ++|+
T Consensus 286 ~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK12849 286 AMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQ 365 (542)
T ss_pred hHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999988888899999999999999999999999999999999999999999999999876 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012868 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (454)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (454)
||++||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++|+..++++|+|+++|++|
T Consensus 366 eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~A 445 (542)
T PRK12849 366 ERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRA 445 (542)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999984489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 396 L~~~~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|+.||++||+|||+|+.++ .+|++.+ .++|||+.+ ||++.|||||+.||.++|++|+
T Consensus 446 l~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~ 507 (542)
T PRK12849 446 LEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAA 507 (542)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHH
Confidence 9999999999999999999 9998764 579999987 9999999999999999999986
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=6.2e-96 Score=781.00 Aligned_cols=443 Identities=39% Similarity=0.580 Sum_probs=426.5
Q ss_pred HHHHhhhcccc----CccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (454)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~ 79 (454)
..||||+|++. ||.++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 46999999999 9999998 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccc
Q 012868 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (454)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~ 159 (454)
+++.|+++++|+++.+++.++|++|+++++.+++++++|+.++|.+|.|.++.++++.+++++++|++|++||.+|||++
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987778999999999999999999999999999999999998888777899999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchh
Q 012868 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (454)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (454)
+++.+..++++|+|+++|.+++++++++|+|+.+.++|+||||++++|+++|+++|..|++++.++|+|||+|+||++|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHH
Q 012868 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (454)
Q Consensus 240 ~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~ 315 (454)
++|+|||++|||++++++.++.++++++++||+|++|+++++++++++++++++.++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012868 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (454)
Q Consensus 316 eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~A 395 (454)
|||+||+|++|||+|||+|+++++|++|+++||+|++++++++|||||||++|+++|..|+++...++++|+|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999865689999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 396 L~~~~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|+.||++||+|||+|+.++ .+|++.+.+++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAA 509 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHH
Confidence 9999999999999999999 99987556679999987 9999999999999999999986
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.7e-95 Score=780.17 Aligned_cols=443 Identities=41% Similarity=0.608 Sum_probs=424.2
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (454)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~ 79 (454)
..||+|+|+++|| .++++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|.+.
T Consensus 64 G~TIlk~i~~~~p~~~~~a~ll------~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~ 137 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVGAQLI------RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKV 137 (555)
T ss_pred hHHHHHhcCcCCcchhHHHHHH------HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3599999999999 77776 6899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccc
Q 012868 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (454)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~ 159 (454)
++++|++++.|+++.++|.++|++|+++++.+++++++|+.+++.+|.|.+++|+++.|++++++|++|++||.+|||++
T Consensus 138 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~ 217 (555)
T PTZ00114 138 VLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVT 217 (555)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccc
Confidence 99999999999988889999999999989999999999999999888899999999987779999999999999999999
Q ss_pred ccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchh
Q 012868 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (454)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (454)
+++.+..++++|+|+++|.+|+++++++|+++++.++|+||+|++++|+++++++|..|+++|.++|++||+|+||++++
T Consensus 218 ~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~ 297 (555)
T PTZ00114 218 NEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRK 297 (555)
T ss_pred ccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeEeeCC-CCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHH
Q 012868 240 AIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKL 314 (454)
Q Consensus 240 ~~ledla~~tGa~i~~~~-~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l 314 (454)
++|+|||++|||+++++. .++.++++++++||+|++|+++++++++++++++++.|++|+++|+.+++++++ ++|
T Consensus 298 ~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l 377 (555)
T PTZ00114 298 DILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKL 377 (555)
T ss_pred HHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999997 677788999999999999999999999999999999999999999999998875 999
Q ss_pred HHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcC---CChhHHHHHHH
Q 012868 315 KDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQI 391 (454)
Q Consensus 315 ~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~---~~~~e~~gi~~ 391 (454)
+|||+||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|.+|++++. .++++|+|+++
T Consensus 378 ~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~ 457 (555)
T PTZ00114 378 KERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKI 457 (555)
T ss_pred HHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874 37999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 392 VQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 392 ~a~AL~~~~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|++||+.||++||+|||+|+.++ ++|++++++++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 458 ~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 524 (555)
T PTZ00114 458 VRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAA 524 (555)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHH
Confidence 99999999999999999999999 99987556779999987 9999999999999999999986
No 6
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.6e-95 Score=770.77 Aligned_cols=446 Identities=41% Similarity=0.600 Sum_probs=424.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||.+++. ..+.+++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~ 127 (520)
T cd03344 50 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEE 127 (520)
T ss_pred HHHHHHHcccCCcchhHH--HHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 468999999999944433 33336899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.+++|+++.|++++++|++|++||.+|||.++|++
T Consensus 128 L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 207 (520)
T cd03344 128 LKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEK 207 (520)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCccc
Confidence 99999999988899999999999999999999999999998888999999998877999999999999999999999988
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHH
Q 012868 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (454)
+..+++||+|+++|.++++++++.++++++.++|+||+|++++|+++++++|..|++++.+++++||+|++|++++++|+
T Consensus 208 ~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~ 287 (520)
T cd03344 208 MEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287 (520)
T ss_pred CeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012868 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (454)
Q Consensus 244 dla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla 319 (454)
|||++|||++++++.+.+++++++++||+|++|++++++++|+++++++++++.|+++|++++++.++ ++|+||++
T Consensus 288 ~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 367 (520)
T cd03344 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLA 367 (520)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999999876 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 012868 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (454)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~AL~~~ 399 (454)
||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|++++..++++|+|+++|++||+.|
T Consensus 368 ~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~i 447 (520)
T cd03344 368 KLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAP 447 (520)
T ss_pred HhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 400 ~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|++||+|||+|+.++ ++|++.+. ++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 448 p~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~ 505 (520)
T cd03344 448 LRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAA 505 (520)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHH
Confidence 999999999999999 99987654 79999987 9999999999999999999986
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=5e-95 Score=772.36 Aligned_cols=446 Identities=38% Similarity=0.561 Sum_probs=422.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||.+++. +.+.+++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~ 128 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEE 128 (524)
T ss_pred HHHHHHHccCCChhhHHH--HHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999943333 33347899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|++++.|+++.+++.++|++|+++++.+++++++|+.++++++.|.++.|++..|++++++|++|++||.+|||.+++++
T Consensus 129 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~ 208 (524)
T TIGR02348 129 LKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEK 208 (524)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccC
Confidence 99999999888899999999999899999999999999998888999988888788999999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHH
Q 012868 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (454)
++..++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|+.|+++|+++|++||+|+||++|+++|+
T Consensus 209 ~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~ 288 (524)
T TIGR02348 209 MEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE 288 (524)
T ss_pred CeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012868 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (454)
Q Consensus 244 dla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla 319 (454)
|||++|||++++++.+++++++++++||+|++|+++++++++++++++++.+..|+++|+++++++.+ ++|+|||+
T Consensus 289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 368 (524)
T TIGR02348 289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLA 368 (524)
T ss_pred HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999999999999999876 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 012868 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (454)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~AL~~~ 399 (454)
||+|+++||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|..|++....++++|+|+++|++||+.|
T Consensus 369 ~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 448 (524)
T TIGR02348 369 KLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAP 448 (524)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999983334899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 400 ~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|++||+|||+|+.++ ++|++. ..++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 449 p~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 506 (524)
T TIGR02348 449 LRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAA 506 (524)
T ss_pred HHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHH
Confidence 999999999999999 999875 3359999987 9999999999999999999986
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.8e-95 Score=775.09 Aligned_cols=445 Identities=35% Similarity=0.521 Sum_probs=425.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||+++++ +.+.+++|.+|++++||||||+++||++||++|.++++ |+||..|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 78889999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|++++.|+++.++|.+||++|+++++.|++++++|+.+++++|.|.++.|+...+++++++|++|++||.+|||++++++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998888888887766678999999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCH-HHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHH
Q 012868 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~-~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l 242 (454)
+..+++||+|+++|.+|+.. .+++++++.+.++|+||+|++++|+++++++|+.|+.++.++|++||+|++|++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHH
Q 012868 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (454)
Q Consensus 243 edla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRl 318 (454)
+|||++|||++++++.+.+++++++++||+|++|++++++++|++ .++++.+..|+.+++++++.+++ ++|+|||
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999998 67789999999999999998877 9999999
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcC-C-ChhHHHHHHHHHHHH
Q 012868 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-T-NSDQKIGVQIVQNAL 396 (454)
Q Consensus 319 a~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~-~-~~~e~~gi~~~a~AL 396 (454)
+||+|+.+||+|||+|+++++|++|+++||+|++|+++++|+|||||++|++||..|++++. . ++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 4 899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 397 ~~~~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
+.||++||+|||+|+.++ +++++. +.++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAA 509 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHH
Confidence 999999999999999999 999765 4579999988 9999999999999999999986
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-94 Score=771.34 Aligned_cols=446 Identities=38% Similarity=0.552 Sum_probs=424.3
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||++++. +.+.+++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999996665 55557999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|++++.|+++.++|.++|++|+++++.+++++++|+.+++++|.|.++.+....+++++++|++|+++|.+|||.++.++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888899999999999899999999999999998888888877666678999999999999999999998888
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHH
Q 012868 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (454)
++.+++||+|+++|.++++.+++.++++++.++|+||||++++|+++++++|+.|+++|.+++++||+|+||+.|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012868 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (454)
Q Consensus 244 dla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla 319 (454)
|||++|||++++++.+++++++++++||+|++|++++++|++++++++++.+..|+++|+++++++.+ ++|+|||+
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998776 89999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 012868 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (454)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~AL~~~ 399 (454)
||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998434899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 400 ~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|++||+|||+|+.++ ++|++.+ .++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAA 508 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHH
Confidence 999999999999999 9998754 579999987 9999999999999999999986
No 10
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=8.1e-95 Score=777.18 Aligned_cols=446 Identities=32% Similarity=0.504 Sum_probs=421.8
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||++.+. +.+.+++|++||+++||||||++|||++||++++++++ |+||..|++||++|.+.++++
T Consensus 108 G~TIlk~i~~~hP~~~~g--akll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~ 185 (600)
T PLN03167 108 GVTVAKEVELEDPVENIG--AKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKE 185 (600)
T ss_pred HHHHHHHcccCCchhhHH--HHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999974443 33447999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|++++.|+++ ++|.++|++|+++++.||+++++|+.++|++|.|.+++|+++.|++++++|++|++||.||||++++++
T Consensus 186 L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~ 264 (600)
T PLN03167 186 LKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEK 264 (600)
T ss_pred HHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCC
Confidence 9999999975 679999999999999999999999999998899999999999888899999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHH
Q 012868 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (454)
|..+++||+|+++|.+|++++++.++++.+.++|+||||++++|++++|++|+.|++++.+++++||+|+||++++++|+
T Consensus 265 m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~ 344 (600)
T PLN03167 265 MSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLD 344 (600)
T ss_pred CeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012868 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (454)
Q Consensus 244 dla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla 319 (454)
|||++|||++++++.+++++++++++||+|++|++++++|+++++.++++.+++|+.+|+.+++++++ ++|++||+
T Consensus 345 dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~ 424 (600)
T PLN03167 345 DIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIA 424 (600)
T ss_pred HHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHh
Confidence 99999999999988788899999999999999999999999999999999999999999999987765 89999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCC-ChhHH-HHHHHHHHHHH
Q 012868 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQNALK 397 (454)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~-~~~e~-~gi~~~a~AL~ 397 (454)
+|+|++++|+|||+|+++++|+||+++||+|++|+|+++|+|||||++|++||.+|++++.. ++.+| +|++++++||+
T Consensus 425 ~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~ 504 (600)
T PLN03167 425 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALS 504 (600)
T ss_pred hcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998764 55555 67999999999
Q ss_pred HHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 398 MAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 398 ~~~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
.|||+||+|||+|+.++ ++|+++++.++|||+.+ ||+++|||||+.||+++|++|+
T Consensus 505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~ 565 (600)
T PLN03167 505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAA 565 (600)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHH
Confidence 99999999999999999 99986566789999988 9999999999999999999986
No 11
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.7e-94 Score=767.23 Aligned_cols=446 Identities=40% Similarity=0.582 Sum_probs=422.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||.+.+. +.+.+++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 53 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~ 130 (541)
T PRK12851 53 GVTIAKEIELEDKFENMG--AQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEE 130 (541)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999944332 33337899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012868 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~ 163 (454)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.+....+++++++|++|++||.+|||.++.++
T Consensus 131 L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 210 (541)
T PRK12851 131 LKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADK 210 (541)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCC
Confidence 99999999888889999999998899999999999999998888888876655678999999999999999999999999
Q ss_pred ceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHH
Q 012868 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (454)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (454)
|+.++++|+|+++|.++++.+++.++++++.++|+||||++++|+++++++|+.|+++|.++|+|||+|+||+.|+++|+
T Consensus 211 ~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~ 290 (541)
T PRK12851 211 MEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 290 (541)
T ss_pred CeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHh
Q 012868 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (454)
Q Consensus 244 dla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla 319 (454)
|||++|||++++++.+++++++++++||+|++|++++++|+|+++++++++++.|+++|+++++++++ ++|+|||+
T Consensus 291 ~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~ 370 (541)
T PRK12851 291 DIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLA 370 (541)
T ss_pred HHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998765 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 012868 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (454)
Q Consensus 320 ~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~~~~e~~gi~~~a~AL~~~ 399 (454)
||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++++..++++|+|+++|++||+.|
T Consensus 371 ~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 450 (541)
T PRK12851 371 KLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAP 450 (541)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998866889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 400 ~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|++||+|||+|+.++ ++|++.+ .++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 451 p~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~ 508 (541)
T PRK12851 451 VRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAA 508 (541)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHH
Confidence 999999999999999 9998764 479999987 9999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-88 Score=689.98 Aligned_cols=442 Identities=39% Similarity=0.579 Sum_probs=429.4
Q ss_pred HHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHh
Q 012868 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (454)
Q Consensus 7 ~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~ 85 (454)
|+.+++++.++...+. +-++++++....+++||||||+++|+++|..++++-+. |.+|.+|++|+.+|++.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 6778999999999998 88999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCccccccccce
Q 012868 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (454)
Q Consensus 86 ~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~~~ 165 (454)
++++||++.+++.+||++|+|+|..++++|.+|++++|++|.|++++|+++.|++++++||.||+||+||||++++++++
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHH
Q 012868 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (454)
Q Consensus 166 ~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledl 245 (454)
++|++|++++++.||+++++|.|.||...+..+||+|+++||+.++|.+|+.|++++.++++|||+|+|||.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeeCCCC-CCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhcch----HHHHHHHhh
Q 012868 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (454)
Q Consensus 246 a~~tGa~i~~~~~~-~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s----~~l~eRla~ 320 (454)
+.+|||+++..+.+ +++++.++++||.|+++.++++.+.++.+.+.+++++.||++++..++..++ ++|+||+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999977 7999999999999999999999999999999999999999999998888766 899999999
Q ss_pred hcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHH
Q 012868 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMA 399 (454)
Q Consensus 321 l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~ 399 (454)
|+||+++|.|||.|+.|++|++++++|||||+++|+++|+|||||+++++|+..|+.+... +.+++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999998874 889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 400 ~~~La~NAG~d~~~v-~kl~~~~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
.++||+|||.|+..+ .|++. .++|||..+ ||++.||+||++|++++|..|+
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~ 521 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAA 521 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhh
Confidence 999999999999999 99983 389999999 9999999999999999999875
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-78 Score=639.10 Aligned_cols=419 Identities=31% Similarity=0.435 Sum_probs=373.1
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012868 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (454)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L 84 (454)
-||||+|+++||.||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998 4789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CcceeeecCCCccceeEEEeeEEEeccccC
Q 012868 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (454)
Q Consensus 85 ~~~s~~v~~~~-----~l~~va~~s~~~~~~l~~li~~A~~~vg~-----~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~ 154 (454)
++++.|+++.+ ...++++.++++++.|++++++|+.+++. ++.+.++..++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998654 45555566666678999999999999998 777778776666678999999999999999
Q ss_pred CccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCC
Q 012868 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (454)
Q Consensus 155 p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 234 (454)
|||.++ .+++||+|+++|++|+..+..+| ++...+++.||++++++..+++|..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999764 47889999999999999998888 888888889999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-ch--
Q 012868 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (454)
Q Consensus 235 g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~-~s-- 311 (454)
+|+++..|+|++++||+++.+++.+ .....+|.|+.|...++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 9999999999999999999886532 155678888888888877766666431 1122222 22
Q ss_pred --HHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHHHc-CCCh-hHH
Q 012868 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNS-DQK 386 (454)
Q Consensus 312 --~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~-~~~~-~e~ 386 (454)
+++++|.++ .|++|||+|||+|+.+++|++|++|||||++|+++++| +|||||++|++++..|++|+ ..++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 788999999 99999999999999999999999999999999999999 99999999999999999983 3455 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCccccccC-----CchhcCCccccccHHHHHhhhh
Q 012868 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPAR-----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 387 ~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~~~-~~~G~d~~~-----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
+|+++|++||+.||++||+|||+||.++ .+|++.+. +++|||+.+ ||++.|||||++||+++|++|+
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~ 498 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAA 498 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99998654 459999999 7999999999999999999986
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-76 Score=624.70 Aligned_cols=382 Identities=19% Similarity=0.246 Sum_probs=344.0
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ + ++|++||+++||||||+++||++|++++.++++ |+||..|++||++|.+.++++
T Consensus 54 G~tIlk~i~~~hP~a~l~--~----~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI--A----RAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH--H----HHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4 789999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCc-c-----eee--ecCCCccceeEEEeeE
Q 012868 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITI--FDRKALYNELNFVKGM 146 (454)
Q Consensus 84 L~~~s~~v~---~~~~l~~va~~s~~~~------~~l~~li~~A~~~vg~~~-~-----I~v--~~g~~~~d~~~~v~G~ 146 (454)
|++++.+++ +.+.+.+||++|++++ +.|++++++|+.++++++ . |++ ..|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7788999999999874 789999999999998765 2 333 257766 579999999
Q ss_pred EEeccccCCccccccccceeeecCcEEEEeccccCCHHH-HHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCcc
Q 012868 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (454)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (454)
+|+++|.+|+|+ .+++||+|+++|.+++..+. +...+ -.||||++++|+++++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~~~------~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNSGF------FYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCcEE------EEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999883 36799999999999886643 21111 14699999999999999999874
Q ss_pred EEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHH
Q 012868 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (454)
Q Consensus 226 i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~~~~~~~~~~i~~ri~~l 302 (454)
|++||+. ++++|+|||++|||+++++ ++++++++||+|++| ++++++|+++++++++
T Consensus 268 I~av~~~-----~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRRA-----KRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 8999974 4678999999999999996 899999999999999 6788899999998765
Q ss_pred HHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHHHcCC
Q 012868 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (454)
Q Consensus 303 ~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~ 381 (454)
+.|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|+++|.+|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 469999999999999999999999999999999999 9999999999999999999775
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC----CchhcCCccccccHHHHHhhh
Q 012868 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKA 452 (454)
Q Consensus 382 -~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A 452 (454)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+ ||++.|||||+.||+++|+.|
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 466 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSA 466 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHH
Confidence 899999999999999999999999999999999 999753 45678999988 999999999999999999998
Q ss_pred h
Q 012868 453 T 453 (454)
Q Consensus 453 ~ 453 (454)
+
T Consensus 467 ~ 467 (484)
T cd03342 467 T 467 (484)
T ss_pred H
Confidence 6
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.7e-75 Score=622.32 Aligned_cols=388 Identities=19% Similarity=0.277 Sum_probs=351.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+++||++|++++.++++ |+||..|++||+.|.+.++++
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCcc---------eee--ecCCCccceeEEEe
Q 012868 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (454)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~~------~~l~~li~~A~~~vg~~~~---------I~v--~~g~~~~d~~~~v~ 144 (454)
|++++.|++ +.+.+.+||++|++++ +.|++++++|+.+++.++. |++ .+|+++. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999986543 677 5788885 789999
Q ss_pred eEEEeccccCCccccccccceeeecCcEEEEeccc-------------cCCHHHHHHHHH-----------HHHHcCCCE
Q 012868 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQSL 200 (454)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~le-----------~i~~~g~~l 200 (454)
|++|+++|.+|+|+ ..++||+|++++.+ +++++++.++++ .+.+.|+||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999984 36799999999988 477777776544 788999999
Q ss_pred EEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe-
Q 012868 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (454)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~- 279 (454)
||++++|+++++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~v-----~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999988753 47899854 5788999999999999996 788999999999999765
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHH
Q 012868 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (454)
Q Consensus 280 --~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~ 357 (454)
+++|++++++++++ .+||+|||+|+.+++|++|+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999987764 489999999999999999999999999999999
Q ss_pred cC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC
Q 012868 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (454)
Q Consensus 358 ~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~---~~~~~~G~d~~~ 431 (454)
+| ||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 99 9999999999999999998764 899999999999999999999999999999999 99974 245679999987
Q ss_pred ----CchhcCCccccccHHHHHhhhh
Q 012868 432 ----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 ----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 476 g~~~d~~~~gI~dp~~vk~~~l~~A~ 501 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQAIKSAT 501 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999986
No 16
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-75 Score=621.43 Aligned_cols=388 Identities=19% Similarity=0.237 Sum_probs=343.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||+++++ + ++|++||+++||||||+++||++||+++.+|++ |+||..|++||+.|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll--~----~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI--A----RAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH--H----HHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999 4 789999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCcc-e-----ee--ecCCCccceeEEEeeE
Q 012868 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL-I-----TI--FDRKALYNELNFVKGM 146 (454)
Q Consensus 84 L~~~s~~v---~~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~~~-I-----~v--~~g~~~~d~~~~v~G~ 146 (454)
|++++.++ .+.+.|.++|++++++ ++.|++++++|+.++++++. | .+ ..|++. +++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~-~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA-TDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-cccEEEeeE
Confidence 99999664 4678899999999875 67899999999999987653 3 33 246665 579999999
Q ss_pred EEeccccCCccccccccceeeecCcEEEEeccccCCH-------------HH-----------HHHHHHHHHHcCC----
Q 012868 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (454)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~~-----------i~~~le~i~~~g~---- 198 (454)
+|+++|.+|+|+. +++||+|++++.+++.. ++ +...++++.+.|.
T Consensus 211 v~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999843 68999999999876432 22 3345666776551
Q ss_pred ---C---EEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee
Q 012868 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (454)
Q Consensus 199 ---~---lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~ 272 (454)
+ ||+++++|++.++++|..+ +|+++|+. ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 8889999999999988874 48999965 3568999999999999986 89999999999
Q ss_pred eeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHH
Q 012868 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (454)
Q Consensus 273 ~~~v---~i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl 349 (454)
|++| ++++++|+++++++++ ++|||+|||+|+.+++|++|+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 6888999999998765 36999999999999999999999999
Q ss_pred HHHHHHHHcC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCC
Q 012868 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSS 423 (454)
Q Consensus 350 ~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~ 423 (454)
|++|+++++| +|||||++|+++|.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. ++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 9999999999999999999765 899999999999999999999999999999999 999763 335
Q ss_pred CccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 424 DLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 424 ~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
++|||+.+ ||++.|||||+.||+++|++|+
T Consensus 477 ~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~ 510 (531)
T TIGR02347 477 VVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSAT 510 (531)
T ss_pred ceeeeccCCCccchhhccCEEcHHHHHHHHHHHH
Confidence 68999987 9999999999999999999986
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.9e-75 Score=618.58 Aligned_cols=388 Identities=19% Similarity=0.265 Sum_probs=350.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||++|++ +++|++||+++||||||+++|+++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---Ccc-------eee--ecCCCccceeEE
Q 012868 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (454)
Q Consensus 84 L~~~s~~v~~--~~~l~~va~~s~~~~-------~~l~~li~~A~~~vg~---~~~-------I~v--~~g~~~~d~~~~ 142 (454)
|++++.|++. .+.|.++|++|++++ +.|++++++|+.++++ +|. |++ ..|+++. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 578999999999764 7899999999999985 453 345 4788875 7899
Q ss_pred EeeEEEeccccCCccccccccceeeecCcEEEEeccc-------------cCCHHHHHHHHH-----------HHHHcCC
Q 012868 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (454)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~le-----------~i~~~g~ 198 (454)
++|++|+++|.+|.|+ ..++||+|++++.+ +++++++.++++ .+++.|+
T Consensus 211 v~G~vi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGMP-------KRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCCc-------cccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998653 36899999999987 678888888776 7899999
Q ss_pred CEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE
Q 012868 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (454)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i 278 (454)
|||+++++|+++++++|..+ ++++|++. ++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~~------gI~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 99999999999999988743 47888854 5688999999999999996 78888899999999986
Q ss_pred ec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012868 279 TM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (454)
Q Consensus 279 ~~---~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a 355 (454)
.+ ++|+++++++++. .+||+|||+|+.+++|.+|+++||+|++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 8899999987653 5899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccc
Q 012868 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (454)
Q Consensus 356 ~~~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~---~~~~~~G~d~ 429 (454)
+++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9998 9999999999999999999765 899999999999999999999999999999999 99975 2456799999
Q ss_pred cC----CchhcCCccccccHHHHHhhhh
Q 012868 430 AR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 430 ~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
.+ ||++.|||||+.||+++|+.|+
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 504 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQAIKSAT 504 (519)
T ss_pred CCCCccchhhccceEcHHHHHHHHHHHH
Confidence 87 9999999999999999999986
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-74 Score=616.45 Aligned_cols=393 Identities=17% Similarity=0.212 Sum_probs=346.3
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Ccc-------eee--ecCCCccceeEE
Q 012868 84 LDC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (454)
Q Consensus 84 L~~-~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~---~~~-------I~v--~~g~~~~d~~~~ 142 (454)
|++ ++.|++ +.+.|.++|++|+++ .+.|++++++|+.+++. +|. |.+ ..|+++. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 898987 778899999999872 37899999999999852 232 222 3688875 7899
Q ss_pred EeeEEEeccccCCccccccccceeeecCcEEEEeccccCC-------------HHH-----------HHHHHHHHHHcCC
Q 012868 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQGQ 198 (454)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~-----------i~~~le~i~~~g~ 198 (454)
++|++|+++|.+|.|+ ..++||+|++++.+++. +++ +.++++.+.+.|+
T Consensus 203 i~Givi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGMP-------TRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCCc-------ccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998653 37899999999987653 222 3366788889999
Q ss_pred CEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE
Q 012868 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (454)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~-~~~~~~~~~LG~~~~v~ 277 (454)
||||++++|+++++++|..+ +|+++++. ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~v-----~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRRV-----KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999875 48999854 56789999999999999985443 23456677899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012868 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (454)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~ 354 (454)
+++++|+++++++++ ++|||+|||+|+++++|++|+++||+|++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999988754 4799999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012868 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (454)
Q Consensus 355 a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~------- 421 (454)
++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999999775 899999999999999999999999999999999 999762 2
Q ss_pred -CCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 422 -SSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 422 -~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
++++|||+.+ ||++.|||||+.||.++|+.|+
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~ 510 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFAT 510 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHH
Confidence 3468999988 9999999999999999999986
No 19
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-74 Score=616.36 Aligned_cols=395 Identities=18% Similarity=0.210 Sum_probs=342.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+++||++|++++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4789999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCcc----------eeeecCCCccceeEEEee
Q 012868 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (454)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~------~~~~l~~li~~A~~~vg~~~~----------I~v~~g~~~~d~~~~v~G 145 (454)
|++++.|++ +.++|.++|++|++ +++.|++++++|+.++++++. |....|+++.| +++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~d-s~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIED-TELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhh-ceeeee
Confidence 999999986 67889999999998 357899999999999987653 44457888864 699999
Q ss_pred EEEeccccCCccccccccceeeecCcEEEEeccc-------------------cCCH-----HHHHHHHHHHHHcCCCEE
Q 012868 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------------ISNS-----NVIRQASLPCMMQGQSLL 201 (454)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~-------------------i~~~-----~~i~~~le~i~~~g~~lv 201 (454)
++|+++|.+|++. |+ .+.||++++.+.+ +.+. +++.++++.+.+.|+|||
T Consensus 203 iv~~k~~~~~~~~--p~----~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--PT----RIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--Cc----cccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997531 11 2344444443322 2222 457788999999999999
Q ss_pred EEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe--
Q 012868 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (454)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~-- 279 (454)
|++++|++++++.++.|.+.+ .+|++|++ +++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~-----~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKD-----IEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEec-----CCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999766666666666554 68999994 56788999999999999996 788999999999999764
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012868 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (454)
Q Consensus 280 -~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~ 358 (454)
+++++++.++... ++.|||+|||+|+.+++|++|+++||+|++|+++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4578888887541 357999999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC-
Q 012868 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR- 431 (454)
Q Consensus 359 g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~- 431 (454)
| +|||||++|+++|.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 9 9999999999999999999765 899999999999999999999999999999999 999763 45679999987
Q ss_pred ---CchhcCCccccccHHHHHhhhh
Q 012868 432 ---DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 ---dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~ 500 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLAT 500 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999986
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-74 Score=613.59 Aligned_cols=394 Identities=18% Similarity=0.239 Sum_probs=340.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Ccc-----eeee--cCCCccceeEEEee
Q 012868 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (454)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~---~~~-----I~v~--~g~~~~d~~~~v~G 145 (454)
|++++.|++ +.+.|.++|++|+++ .+.|++++++|+.+++. ++. |++. .|+++ +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999987 678899999999974 34579999999999975 233 3333 46666 57999999
Q ss_pred EEEeccccCC-ccccccccceeeecCcEEEEecccc-------------CC-----------HHHHHHHHHHHHHcCCCE
Q 012868 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKI-------------SN-----------SNVIRQASLPCMMQGQSL 200 (454)
Q Consensus 146 ~~~~~g~~~p-~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~-----------~~~i~~~le~i~~~g~~l 200 (454)
++|+++|.++ .|+ ..++||+|++++.++ .+ .+++.++++++.+.|+||
T Consensus 204 ivl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999883 332 134566666655432 22 245678899999999999
Q ss_pred EEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE-E-
Q 012868 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A- 278 (454)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~-i- 278 (454)
|+++++|++++++.++.|.+.+ ++|++||+ .++++|+|||++|||+++++ ++++++++||+|+.|+ +
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~-----v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKD-----IEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEec-----CCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999777777777766666 78999995 46788999999999999996 7889999999999987 3
Q ss_pred -ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHH
Q 012868 279 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (454)
Q Consensus 279 -~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~ 357 (454)
+++.++++.+++++ |++|||+|||+|+++++|++|+++||++++|++++
T Consensus 346 ~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778777542 36799999999999999999999999999999999
Q ss_pred c-CCcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC
Q 012868 358 E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR 431 (454)
Q Consensus 358 ~-gvVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~ 431 (454)
+ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 8 69999999999999999999765 899999999999999999999999999999999 999763 45679999987
Q ss_pred ----CchhcCCccccccHHHHHhhhh
Q 012868 432 ----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 ----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|++|+
T Consensus 476 g~i~d~~~~gI~dp~~vk~~ai~~A~ 501 (517)
T TIGR02342 476 GGITDMLEEEVLQPLLVTTSAVTLAS 501 (517)
T ss_pred CCccchhhccceEcHHHHHHHHHHHH
Confidence 9999999999999999999997
No 21
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-74 Score=614.23 Aligned_cols=394 Identities=19% Similarity=0.219 Sum_probs=341.3
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------cceeee--cCCCccceeEEEe
Q 012868 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (454)
Q Consensus 84 L~~~s~~v~----~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~-------~~I~v~--~g~~~~d~~~~v~ 144 (454)
|++++.|++ +.+.|.++|++|+++ .+.|++++++|+..+... ..|++. .|+++. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999999975 256899999999887431 134443 688885 689999
Q ss_pred eEEEeccccCCcccccccc-----ceeeecCcEEEEeccc--cCCHHH-----------HHHHHHHHHHcCCCEEEEecC
Q 012868 145 GMKLEWGLKSPYFFTHKNK-----KECVLDGALVLIYDTK--ISNSNV-----------IRQASLPCMMQGQSLLVVAED 206 (454)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~-----~~~~l~~~~Il~~d~~--i~~~~~-----------i~~~le~i~~~g~~lvii~~~ 206 (454)
|++|+++|.+|+|+++.+. ....|+.|++ .++.+ ++++++ +.++++.+.+.|+||||++++
T Consensus 218 Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~-~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 296 (526)
T cd03339 218 GIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWG 296 (526)
T ss_pred eEEEecccCCCCCCceecCCCEEEEEecccCCcc-ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999764332 1123334433 22333 566665 677899999999999999999
Q ss_pred cchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---e--cc
Q 012868 207 VENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T--MD 281 (454)
Q Consensus 207 i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i---~--~~ 281 (454)
|+++++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|+.|+. + ++
T Consensus 297 I~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~ 360 (526)
T cd03339 297 FDDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREISFGTTKD 360 (526)
T ss_pred CCHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEEecCCCc
Confidence 9999999999765 77999853 356999999999999996 88999999999999873 3 46
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-C
Q 012868 282 NVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-I 360 (454)
Q Consensus 282 ~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-v 360 (454)
+++|+++|+++ +.|||+|||+|+.+++|++|+++||+|++|+++++| +
T Consensus 361 ~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~v 409 (526)
T cd03339 361 KMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRI 409 (526)
T ss_pred EEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 78999988765 468999999999999999999999999999999998 9
Q ss_pred cCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCccccccC---
Q 012868 361 VPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYNPAR--- 431 (454)
Q Consensus 361 VpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~----~~~~~G~d~~~--- 431 (454)
|||||++|+++|..|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||+.+
T Consensus 410 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~ 489 (526)
T cd03339 410 VYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGT 489 (526)
T ss_pred EeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCcc
Confidence 999999999999999999765 889999999999999999999999999999999 999742 24569999987
Q ss_pred -CchhcCCccccccHHHHHhhhh
Q 012868 432 -DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 -dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 490 ~d~~~~gV~dp~~vk~~~l~~A~ 512 (526)
T cd03339 490 NDMKEQKVFETLISKKQQILLAT 512 (526)
T ss_pred CchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999997
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.5e-74 Score=613.20 Aligned_cols=393 Identities=17% Similarity=0.216 Sum_probs=347.2
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCcc-------eee--ecCCCccceeEE
Q 012868 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (454)
Q Consensus 84 L~~~-s~~v~--~~~~l~~va~~s~~------~~~~l~~li~~A~~~vg---~~~~-------I~v--~~g~~~~d~~~~ 142 (454)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+.+++ .+|. |.+ ..|+++ +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9975 88887 67889999999987 46789999999999986 2342 333 478888 68999
Q ss_pred EeeEEEeccccCCccccccccceeeecCcEEEEeccccCCHH------------------------HHHHHHHHHHHcCC
Q 012868 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQ 198 (454)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~------------------------~i~~~le~i~~~g~ 198 (454)
++|++|+++|.+|.| ..+++||+|++++.+|+..+ .+.+.++.+.+.|.
T Consensus 207 i~Gi~i~~~~~~~~m-------~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQM-------PKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCC-------cceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999855 34789999999998764332 23366777888999
Q ss_pred CEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE
Q 012868 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (454)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~-~~~~~~~~~LG~~~~v~ 277 (454)
+||+++++|++.++++|..++ ++++++. ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~~------I~~i~rv-----~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEAG------AMGVRRC-----KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHCC------cEEEecC-----CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 999999999999999988754 8899864 46789999999999999986444 33556778899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012868 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (454)
Q Consensus 278 ---i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~ 354 (454)
+++++|+++++++++. +|||+|||+|+.+++|++|+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~~-------------------------------~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGRK-------------------------------SASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999887653 699999999999999999999999999999
Q ss_pred HHHcC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012868 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (454)
Q Consensus 355 a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~------- 421 (454)
++++| +|||||++|+++|..|++++.. ++++++|+++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999998764 899999999999999999999999999999999 999762 1
Q ss_pred -CCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 422 -SSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 422 -~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
+.++|||+.+ ||++.|||||+.||.++|+.|+
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~ 514 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFAT 514 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHH
Confidence 3468999987 9999999999999999999986
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-73 Score=610.17 Aligned_cols=394 Identities=19% Similarity=0.199 Sum_probs=339.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||+.|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--c-----ceeee--cCCCccceeEEEe
Q 012868 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D-----LITIF--DRKALYNELNFVK 144 (454)
Q Consensus 84 L~~~s~~v~----~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~--~-----~I~v~--~g~~~~d~~~~v~ 144 (454)
|++++.|++ +.+.|.++|++++++ .+.|++++++|+..+... + .|++. .|+++.| +++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~d-s~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLED-TKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCccc-ceeEe
Confidence 999998875 357899999998874 346889999999887431 1 24443 6888864 69999
Q ss_pred eEEEeccccCCcccccccc-----ceeeecCcEEEEeccc--cCCHHHH-----------HHHHHHHHHcCCCEEEEecC
Q 012868 145 GMKLEWGLKSPYFFTHKNK-----KECVLDGALVLIYDTK--ISNSNVI-----------RQASLPCMMQGQSLLVVAED 206 (454)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~-----~~~~l~~~~Il~~d~~--i~~~~~i-----------~~~le~i~~~g~~lvii~~~ 206 (454)
|++|+++|.+|+|++..+. ....|+.|++ .++.+ +++++++ .++++++.+.|+||||++++
T Consensus 222 Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~-~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~ 300 (532)
T TIGR02343 222 GIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWG 300 (532)
T ss_pred eEEEecCcCCCCCCeeecCCcEEEEEeecccccc-ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 9999999999998764332 1123333333 12333 6677665 77899999999999999999
Q ss_pred cchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec--c
Q 012868 207 VENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM--D 281 (454)
Q Consensus 207 i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~~--~ 281 (454)
|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|++|+ ++. +
T Consensus 301 I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ig~~~~ 364 (532)
T TIGR02343 301 FDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREISFGTTKD 364 (532)
T ss_pred ccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEEecCCcc
Confidence 9999999999875 77899764 356999999999999996 8899999999999886 333 4
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012868 282 NVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GI 360 (454)
Q Consensus 282 ~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~-gv 360 (454)
++++++++++++ +|||+|||+|+++++|+||+++||++++|+++++ ++
T Consensus 365 ~~~~i~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~v 413 (532)
T TIGR02343 365 RMLVIEQCKNSK-------------------------------AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRI 413 (532)
T ss_pred eEEEEECCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 789999987763 6899999999999999999999999999999998 59
Q ss_pred cCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCccccccC---
Q 012868 361 VPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYNPAR--- 431 (454)
Q Consensus 361 VpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~----~~~~~G~d~~~--- 431 (454)
|||||++|+++|++|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. +..++|||+.+
T Consensus 414 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i 493 (532)
T TIGR02343 414 VYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGT 493 (532)
T ss_pred EeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCcc
Confidence 999999999999999999775 889999999999999999999999999999999 999752 24568999987
Q ss_pred -CchhcCCccccccHHHHHhhhh
Q 012868 432 -DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 -dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 494 ~d~~~~gV~Dp~~vk~~al~~A~ 516 (532)
T TIGR02343 494 NDMKEQGVFETLIGKKQQIQLAT 516 (532)
T ss_pred ccchhccCeecHHHHHHHHHHHH
Confidence 9999999999999999999987
No 24
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-73 Score=606.72 Aligned_cols=391 Identities=16% Similarity=0.180 Sum_probs=349.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc---ceeee--cCCCccceeEEEeeE
Q 012868 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (454)
Q Consensus 84 L~~~s~~v~~------~~~l~~va~~s~~------~~~~l~~li~~A~~~vg~~~---~I~v~--~g~~~~d~~~~v~G~ 146 (454)
|++++.|+++ .+.|.++|+++++ ++++|++++++|+.++++++ .|.+. .|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 4669999999976 36789999999999998765 34443 687775 58999999
Q ss_pred EEeccccCCccccccccceeeecCcEEEEecccc-------------CCHHH-----------HHHHHHHHHHcCCCEEE
Q 012868 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (454)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~~~-----------i~~~le~i~~~g~~lvi 202 (454)
+|+++|.+|+|...|+ .++||+|++++.++ +++.+ +.+.++.+.+.|.++|+
T Consensus 211 v~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999866554 58999999999763 45444 55667888899999999
Q ss_pred EecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012868 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (454)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (454)
+++.|++.++++|..++ |+++++. ++++|+|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~~------I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADRD------IFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 99999999999888754 7888865 4577999999999999996 7899999999999997 67
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012868 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g 359 (454)
+++++++.+|..++ .+||++||+|+..++|.+|+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999987553 58999999999999999999999999999999996
Q ss_pred -CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCccccccC-
Q 012868 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPAR- 431 (454)
Q Consensus 360 -vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~-~~~G~d~~~- 431 (454)
+|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999999764 899999999999999999999999999999999 999773 33 568999987
Q ss_pred ---CchhcCCccccccHHHHHhhhh
Q 012868 432 ---DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 ---dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 480 ~i~d~~~~gV~dp~~vk~~~i~~A~ 504 (522)
T cd03340 480 GIADNFEAFVWEPSLVKINALTAAT 504 (522)
T ss_pred cccchhhcCceEcHHHHHHHHHHHH
Confidence 9999999999999999999986
No 25
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.2e-74 Score=612.14 Aligned_cols=395 Identities=15% Similarity=0.183 Sum_probs=335.8
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||+.|.+.+++.
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCC---HHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCc--ceeee-------cCCCccceeEEEee
Q 012868 84 LDCQAR-KITT---FEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LITIF-------DRKALYNELNFVKG 145 (454)
Q Consensus 84 L~~~s~-~v~~---~~~l~~va~~s~~-----~~~~l~~li~~A~~~vg~~~--~I~v~-------~g~~~~d~~~~v~G 145 (454)
|++++. ++++ .+.+.++|+++.+ +++.|++++++|+.++++++ .+.++ .|+++. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 7643 6789999877664 37889999999999998654 33333 688775 7999999
Q ss_pred EEEecc---------------ccCCccccccc-cceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcch
Q 012868 146 MKLEWG---------------LKSPYFFTHKN-KKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVEN 209 (454)
Q Consensus 146 ~~~~~g---------------~~~p~~~~~~~-~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~ 209 (454)
++|+++ |.+|++.++++ +..+.+++|..+....+ ...+++.++++.+.+.|+||||++++|++
T Consensus 213 i~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~e~~~i~~~l~~i~~~g~~lvi~~~~I~d 291 (531)
T TIGR02346 213 MVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSK-GEENQIEAYIKAIADSGVNVIVTGGSVGD 291 (531)
T ss_pred eEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHH-HHHHHHHHHHHHHHHcCCcEEEECCCcCH
Confidence 999999 33443333333 22333333333221111 11345778899999999999999999999
Q ss_pred hHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ecceEEEE
Q 012868 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVII 286 (454)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i---~~~~~~~~ 286 (454)
.++++|.. .+|+|||+|++++ |+|||.+|||+++++ ++++++++||+|++|++ +++++.++
T Consensus 292 ~~~~~l~~------~~I~av~~~~~~~-----l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~i 355 (531)
T TIGR02346 292 MALHYCEK------YNIMVLKIPSKFE-----LRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEIGGQKVTVF 355 (531)
T ss_pred HHHHHHHH------CCcEEEecCCHHH-----HHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEECCEEEEEE
Confidence 99997774 4599999997654 899999999999986 78899999999999875 45688888
Q ss_pred cCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCch
Q 012868 287 GGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSG 365 (454)
Q Consensus 287 ~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVpGGG 365 (454)
.++.. .+++|||+|||+|+.+++|++|+++||+|++|+++++| +|||||
T Consensus 356 ~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG 405 (531)
T TIGR02346 356 KQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAG 405 (531)
T ss_pred EccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcC
Confidence 87542 24689999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC------Cch
Q 012868 366 VALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR------DMF 434 (454)
Q Consensus 366 aael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~------dm~ 434 (454)
++|+++|.+|++|+.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+ ||+
T Consensus 406 ~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~ 485 (531)
T TIGR02346 406 ATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDAS 485 (531)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChh
Confidence 9999999999999765 889999999999999999999999999999999 999763 45578999975 999
Q ss_pred hcCCccccccHHHHHhhhh
Q 012868 435 KCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 435 ~~gI~Dp~~vk~~al~~A~ 453 (454)
+.|||||+.||+++|++|+
T Consensus 486 ~~gI~dp~~vk~~~l~~A~ 504 (531)
T TIGR02346 486 EAGIYDNLATKKWAIKLAT 504 (531)
T ss_pred hcCceEcHHHHHHHHHHHH
Confidence 9999999999999999986
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-73 Score=605.13 Aligned_cols=391 Identities=15% Similarity=0.168 Sum_probs=345.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc----ceee--ecCCCccceeEEEeeE
Q 012868 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITI--FDRKALYNELNFVKGM 146 (454)
Q Consensus 84 L~~~s~~v~-----~~~~l~~va~~s~~------~~~~l~~li~~A~~~vg~~~----~I~v--~~g~~~~d~~~~v~G~ 146 (454)
|++++.|++ +.+.+.++|++|++ ++++|++++++|+.++++++ .|.+ .+|+++. ++++++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~-ds~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ-DSVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH-hcceecce
Confidence 999999987 45789999999977 46889999999999998642 2333 2788886 47899999
Q ss_pred EEeccccCCccccccccceeeecCcEEEEeccccC-------------CHHH-----------HHHHHHHHHHcCCCEEE
Q 012868 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (454)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~~-----------i~~~le~i~~~g~~lvi 202 (454)
+|+++|.+|||.+.|+ .++||+|+++|.+++ ++++ +...++.+.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQPK----KFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCCc----eeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999866553 689999999997753 3333 33456667888999999
Q ss_pred EecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---e
Q 012868 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (454)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i---~ 279 (454)
+.+.|++.++++|..+ +|++++++. +++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v~-----~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRVS-----DEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988875 488998753 467999999999999996 78899999999999864 4
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-
Q 012868 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~- 358 (454)
+++++++.|++.+ ..|||+|||+|+.+++|++|+++||+|++|+++++
T Consensus 352 ~~r~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6789999888655 36999999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC--
Q 012868 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR-- 431 (454)
Q Consensus 359 gvVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~-- 431 (454)
|+|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 69999999999999999998764 899999999999999999999999999999999 999763 44579999987
Q ss_pred --CchhcCCccccccHHHHHhhhh
Q 012868 432 --DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 --dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|++|+
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~ 504 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAF 504 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHH
Confidence 9999999999999999999987
No 27
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-73 Score=604.37 Aligned_cols=388 Identities=13% Similarity=0.146 Sum_probs=343.2
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc-----------ceeee--cCCCccceeEE
Q 012868 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (454)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~~-----------~I~v~--~g~~~~d~~~~ 142 (454)
|++++.|++ +.+.+.++|+++.++ ++.|++++++|+..+++++ .|+++ +|+++.| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCc
Confidence 999999987 567799999877553 4789999999999997643 14554 4888865 899
Q ss_pred EeeEEEeccccCCccccccccceeeecCcEEEEeccccCC-------------HHHHHHHHH-----------HHHHcCC
Q 012868 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (454)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~i~~~le-----------~i~~~g~ 198 (454)
++|+.|++++.++.| +.+++||+|++++.+++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999877654 347899999999987644 466666654 7778888
Q ss_pred CEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEE
Q 012868 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (454)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~-~~~v~ 277 (454)
+||++.+.+++.++++|..+ +|+++++ .++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~~------~I~av~~-----v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLKA------NISAIRR-----VRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhHC------CceEEec-----CCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 88888899999999987763 5899885 56788999999999999996 78899999999 99887
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012868 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (454)
Q Consensus 278 i---~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~ 354 (454)
+ +++++++++++++++ .|||+|||+|+.+++|+||+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~~-------------------------------~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDPK-------------------------------ACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCCC-------------------------------EEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 567899999987653 599999999999999999999999999999
Q ss_pred HHHc-CCcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCccc
Q 012868 355 AKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (454)
Q Consensus 355 a~~~-gvVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~-~~~~G~ 427 (454)
++++ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++||
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9998 59999999999999999998765 899999999999999999999999999999999 999763 2 456999
Q ss_pred cccC----CchhcCCccccccHHHHHhhhh
Q 012868 428 NPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 428 d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|+.+ ||++.|||||+.||+++|+.|+
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~~l~~A~ 506 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAI 506 (525)
T ss_pred ECCCCccccchhccceecHHHHHHHHHHHH
Confidence 9987 9999999999999999999986
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-72 Score=599.32 Aligned_cols=387 Identities=18% Similarity=0.236 Sum_probs=341.0
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeee--cCCCccceeEEEeeEE
Q 012868 84 LDCQARKIT-----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (454)
Q Consensus 84 L~~~s~~v~-----~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~~v~G~~ 147 (454)
|+++++|++ +.+.|.++|+|+.++ ++.|++++++|+.+++.. ..|.+. +|+++. ++.+++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999884 246799999866543 578999999999998632 234554 588885 689999999
Q ss_pred EeccccCCccccccccceeeecCcEEEEeccccC--------------CHHHHH-----------HHHHHHHHcCCCEEE
Q 012868 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVIR-----------QASLPCMMQGQSLLV 202 (454)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~--------------~~~~i~-----------~~le~i~~~g~~lvi 202 (454)
+++++.++ +...++||+|++++.+++ +++++. +.++.+.+.|.++++
T Consensus 210 ~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99886433 134789999999998654 555543 346778899999999
Q ss_pred EecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012868 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (454)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (454)
+++.|++.++++|..+ +|++||+|++. +|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~~~-----~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHADFD-----GVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCCHH-----HHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999988864 58999998643 4999999999999996 7899999999999886 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012868 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g 359 (454)
+++++++.+|+.+ +.|||+|||+|+.+++|.+|+++||+|++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7789999988654 479999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC--
Q 012868 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR-- 431 (454)
Q Consensus 360 -vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~-- 431 (454)
+|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 9999999999999999999775 899999999999999999999999999999999 999763 45679999987
Q ss_pred --CchhcCCccccccHHHHHhhhh
Q 012868 432 --DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 --dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~ 498 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSAS 498 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999986
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.7e-72 Score=601.71 Aligned_cols=387 Identities=19% Similarity=0.229 Sum_probs=340.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceee--ecCCCccceeEEEeeEE
Q 012868 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (454)
Q Consensus 84 L~~~s~~v~~-----~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~---~~I~v--~~g~~~~d~~~~v~G~~ 147 (454)
|+++++|+++ .++|.++|+|+.++ .+.|++++++|+..+... ..|.+ .+|+++. ++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999999864 46799999866653 367999999999888432 13344 3788885 689999999
Q ss_pred EeccccCCccccccccceeeecCcEEEEecccc--------------CCHHHHH-----------HHHHHHHHcCCCEEE
Q 012868 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVIR-----------QASLPCMMQGQSLLV 202 (454)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~~~i~-----------~~le~i~~~g~~lvi 202 (454)
+++++.++ ++.+++||+|+++|.++ ++++++. ..++.+.+.|.++++
T Consensus 222 ~~~~~~~~--------~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG--------QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC--------CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99886443 23478999999999876 5655543 246678889999999
Q ss_pred EecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012868 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (454)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (454)
+++.|++.++++|..+ +|++||+++ +.+++|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v~-----~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHAD-----FDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecCC-----HHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988865 489999653 357999999999999996 7889999999999997 77
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012868 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g 359 (454)
+++++++.+|..+ +.|||+|||+|+.+++|+||+++||||++|+++++|
T Consensus 358 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAKG-------------------------------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCCC-------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8899999887643 579999999999999999999999999999999997
Q ss_pred -CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC--
Q 012868 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR-- 431 (454)
Q Consensus 360 -vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~---~~~~~~G~d~~~-- 431 (454)
+|||||++|+++|..|++|+.. ++++|+|+++|++||+.||++||+|||+|+.++ .+|++ +++.++|||+.+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 9999999999999999999775 899999999999999999999999999999999 99975 345679999988
Q ss_pred --CchhcCCccccccHHHHHhhhh
Q 012868 432 --DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 --dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 487 i~d~~~~gI~dp~~vk~~al~~A~ 510 (533)
T PTZ00212 487 VGDMKELGITESYKVKLSQLCSAT 510 (533)
T ss_pred ccchhhccceecHHHHHHHHHHHH
Confidence 9999999999999999999987
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.9e-72 Score=590.28 Aligned_cols=371 Identities=13% Similarity=0.157 Sum_probs=332.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|+++||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--c---------ceeee--cCCCccceeEE
Q 012868 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNF 142 (454)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~--~---------~I~v~--~g~~~~d~~~~ 142 (454)
|++++.|++ +.+.+.++++++.++ ++.|++++++|+..++++ + .|+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hccc
Confidence 999999987 778899999998874 458999999999999754 2 14454 488875 5899
Q ss_pred EeeEEEeccccCCccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCC
Q 012868 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (454)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~ 222 (454)
++|++|++++.+|.| +.+++||+|++++.+++. |+|++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988755 347899999999998775 8999999999999999986
Q ss_pred CccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceee-eEEE---EecceEEEEcCCCChhhHHHH
Q 012868 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC-KRVI---ATMDNVVIIGGSGELVDIQER 298 (454)
Q Consensus 223 ~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~-~~v~---i~~~~~~~~~~~~~~~~i~~r 298 (454)
+|++|++ .++++|+|||++|||+++++ ++++++++||+| +.++ +++++++++++++++
T Consensus 263 --~I~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRR-----VRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEe-----CCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 4899996 45678999999999999996 788999999995 4443 355788999988765
Q ss_pred HHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHH
Q 012868 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (454)
Q Consensus 299 i~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~-gvVpGGGaael~~s~~L~~ 377 (454)
+.|||+|||+|+.+++|.||+++||++++++++++ ++|||||++|+++|.+|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999 5999999999999999999
Q ss_pred HcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCccccccC----CchhcCCccccccHHH
Q 012868 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPAR----DMFKCGDVDPLKHVPS 447 (454)
Q Consensus 378 ~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~-~~~~G~d~~~----dm~~~gI~Dp~~vk~~ 447 (454)
++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+|+.+ ||++.|||||+.||++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 8775 899999999999999999999999999999999 999763 3 4569999987 9999999999999999
Q ss_pred HHhhhh
Q 012868 448 EFAKAT 453 (454)
Q Consensus 448 al~~A~ 453 (454)
+|+.|+
T Consensus 460 ~l~~A~ 465 (480)
T cd03337 460 TYKTAI 465 (480)
T ss_pred HHHHHH
Confidence 999987
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-71 Score=592.39 Aligned_cols=387 Identities=18% Similarity=0.216 Sum_probs=338.4
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeee--cCCCccceeEEEeeEE
Q 012868 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (454)
Q Consensus 84 L~~~s~~v~~-----~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~~v~G~~ 147 (454)
|+++++|+++ .++|.++|+++.++ .+.|+++.++|+..+... ..|.+. +|+++. ++.+++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEE
Confidence 9999999853 46899999988874 246889999999887421 235665 688885 688999999
Q ss_pred EeccccCCccccccccceeeecCcEEEEeccccCC--------------HHHHH-----------HHHHHHHHcCCCEEE
Q 012868 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVIR-----------QASLPCMMQGQSLLV 202 (454)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~--------------~~~i~-----------~~le~i~~~g~~lvi 202 (454)
+++++.++ ++..++||+|+++|.+++. ++++. .+++.+.+.|.++++
T Consensus 211 ~~~~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99886432 2337899999999987642 33332 336678899999999
Q ss_pred EecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee
Q 012868 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (454)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (454)
+++.|++.++++|..+ +|+++|+|+++ +|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~~~-----~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHADFE-----GIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCCHH-----HHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999988764 59999998744 5999999999999996 7889999999999885 46
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-
Q 012868 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~- 358 (454)
+++++++.+|+++ +.|||+|||+|+.+++|++|+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999988754 47999999999999999999999999999999998
Q ss_pred CCcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC--
Q 012868 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR-- 431 (454)
Q Consensus 359 gvVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~-- 431 (454)
++|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. +..++|||+.+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 59999999999999999998765 899999999999999999999999999999999 999763 45578999987
Q ss_pred --CchhcCCccccccHHHHHhhhh
Q 012868 432 --DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 --dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++.|||||+.||+++|+.|+
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~ 499 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAA 499 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHH
Confidence 9999999999999999999986
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-70 Score=577.48 Aligned_cols=373 Identities=17% Similarity=0.206 Sum_probs=328.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..|||++|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.+++.
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--cceeee-------cCCCccceeEEEee
Q 012868 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLITIF-------DRKALYNELNFVKG 145 (454)
Q Consensus 84 L~~~s~~-v~---~~~~l~~va~~s~~-----~~~~l~~li~~A~~~vg~~--~~I~v~-------~g~~~~d~~~~v~G 145 (454)
|++++.+ ++ +.+.+.++++++.+ +++.|++++++|+.+++++ +.+.++ +|++.. ++++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEee
Confidence 9999865 53 45678888877753 3678999999999999865 443332 688876 4799999
Q ss_pred EEEeccccCCccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCcc
Q 012868 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (454)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (454)
++|++.+.+ +..+++||+|++++.+++. |+||||++++|+++++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999865321 2257899999999999886 899999999999999997664 46
Q ss_pred EEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHH
Q 012868 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQL 302 (454)
Q Consensus 226 i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~---~~~~~~~~~~~~~~i~~ri~~l 302 (454)
|++||+|+ +++|+|||++|||+++++ ++++++++||+|++|++.+ ++++++.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 99999986 456999999999999996 7888899999999998654 789999887541
Q ss_pred HHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHHHcCC
Q 012868 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (454)
Q Consensus 303 ~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~ 381 (454)
+++|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|++++..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999999999999999998 9999999999999999998764
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC------CchhcCCccccccHHHHHh
Q 012868 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR------DMFKCGDVDPLKHVPSEFA 450 (454)
Q Consensus 382 -~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~---~~~~~~G~d~~~------dm~~~gI~Dp~~vk~~al~ 450 (454)
++++++|+++|++||+.||++||+|||+|+.++ .+|+. +++.++|||+.+ ||++.|||||+.||+++|+
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~ 453 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHH
Confidence 889999999999999999999999999999999 99975 345578999853 9999999999999999999
Q ss_pred hhh
Q 012868 451 KAT 453 (454)
Q Consensus 451 ~A~ 453 (454)
+|+
T Consensus 454 ~A~ 456 (472)
T cd03341 454 LAT 456 (472)
T ss_pred HHH
Confidence 986
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9e-70 Score=572.92 Aligned_cols=371 Identities=26% Similarity=0.358 Sum_probs=334.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
..||||+|++.||+++++ +++|++||+++||||||+++|+++|++++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------Ccceeee--cCCCccceeEEEeeEE
Q 012868 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (454)
Q Consensus 84 L~~~s~~--v~~~~~l~~va~~s~~------~~~~l~~li~~A~~~vg~------~~~I~v~--~g~~~~d~~~~v~G~~ 147 (454)
|++++.| +.+.+.+.++|+++++ +++.+++++++|+.++++ .+.|+++ .|+++. ++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEE
Confidence 9999998 5577899999999998 578899999999999987 5667776 576664 578999999
Q ss_pred EeccccCCccccccccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEE
Q 012868 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (454)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~ 227 (454)
|+++|.+|+| +.++++|+|++++.+|+. |+++.++|+++++++|..+ +|+
T Consensus 203 ~~~~~~~~~m-------~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~~------~I~ 252 (464)
T cd00309 203 FDKGYLSPYM-------PKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAKL------GIM 252 (464)
T ss_pred EecCCCCCCC-------ceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHHC------CeE
Confidence 9999999998 247899999999999886 6666677999999988873 599
Q ss_pred EEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHH
Q 012868 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRS 304 (454)
Q Consensus 228 avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~ 304 (454)
+|++. ++++|+|||++|||+++++ ++++++++||+|+.|++. +++++++.+++.+
T Consensus 253 ~v~~~-----~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRRV-----RKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 99974 5678999999999999986 788889999999999754 4577888776543
Q ss_pred HhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHHHcCC-C
Q 012868 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (454)
Q Consensus 305 ~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~-gvVpGGGaael~~s~~L~~~~~~-~ 382 (454)
+.|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|++++..|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 46999999999999999999999999999999999 69999999999999999999874 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 383 ~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
+++|+++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+ ||++.|||||+.||+++|+.|+
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 450 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSAT 450 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999764 23467999887 9999999999999999999986
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-70 Score=530.56 Aligned_cols=390 Identities=16% Similarity=0.164 Sum_probs=346.2
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012868 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (454)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L 84 (454)
-||||.+.+.||+||.| | ++|++||.||||||||||+||+++|+++..+++ |+||..|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktl--V----dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL--V----DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH--H----HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999 4 689999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc---ceee--ecCCCccceeEEEeeEE
Q 012868 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMK 147 (454)
Q Consensus 85 ~~~s~~v~--~----~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~~---~I~v--~~g~~~~d~~~~v~G~~ 147 (454)
++++..++ + ++.|.+.|.|+.++ .++|++++++|+..++.+. .|-+ .+|++++| +.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d-S~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED-SLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch-hhhcccee
Confidence 99998876 2 35577888877753 5789999999999987432 3444 48999975 78999999
Q ss_pred EeccccCCccccccccceeeecCcEEEEeccc-------------cCCHHH-----------HHHHHHHHHHcCCCEEEE
Q 012868 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVV 203 (454)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~-----------i~~~le~i~~~g~~lvii 203 (454)
|++.|....|..+|+ .|.||+|+++|.. +.++++ +.+.|+++..+|+++|+.
T Consensus 216 FkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999998888866665 7999999999853 344544 335688999999999988
Q ss_pred ecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec
Q 012868 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (454)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (454)
.-.|.|.|.++|+... + .|| |+..+++|.|+..+|||++.++ ..++.++.||.|..++ +++
T Consensus 292 kLpIGD~ATQyFAdrd---i--FCA------GRV~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRD---I--FCA------GRVPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccC---c--eec------CcCCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 8899999999888643 2 233 4456789999999999999986 6889999999999885 789
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012868 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (454)
Q Consensus 281 ~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g- 359 (454)
++|.+|+||+.. .+||+++||+-++.++|.+|++|||++.+|.|+++.
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999865 369999999999999999999999999999999985
Q ss_pred CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC---
Q 012868 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR--- 431 (454)
Q Consensus 360 vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~---~~~~~~G~d~~~--- 431 (454)
+|+|||+.||++|++|++|+.. .+++|+-+.+|++|||.||||||+|||+|..++ +|||. +|..++|+|+.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999987 999999999999999999999999999999999 99987 477889999997
Q ss_pred -CchhcCCccccccHHHHHhhhh
Q 012868 432 -DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 -dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||++++||||..||.+|+..|+
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aat 507 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAAT 507 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHH
Confidence 9999999999999999999886
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.1e-64 Score=536.37 Aligned_cols=388 Identities=20% Similarity=0.314 Sum_probs=345.3
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
+.|||+++++.||+++++ ++++++||+++||||||+++|+++|++++.++++ |+||..|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 468999999999999998 5789999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccC---cceee--ecCCCccceeEEEeeEEEecc
Q 012868 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (454)
Q Consensus 84 L~~~s~~v~~~-~~l~~va~~s~~~~------~~l~~li~~A~~~vg~~---~~I~v--~~g~~~~d~~~~v~G~~~~~g 151 (454)
|++++.++++. +.+.++++++++++ +.|++++++|+..+..+ +.+.+ ..|++. +++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999999876 89999999999976 79999999999444211 12332 356666 46899999999999
Q ss_pred ccCCccccccccceeeecCcEEEEeccccCCHHH-----------------------HHHHHHHHHHcCCCEEEEecCcc
Q 012868 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (454)
Q Consensus 152 ~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-----------------------i~~~le~i~~~g~~lvii~~~i~ 208 (454)
|.+|.|+ ..+++|+|++++.+++.... +.++++++.+.|+|||+++++|+
T Consensus 184 ~~~~~~~-------~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNMP-------KKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTSB-------SEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred ccccccc-------cccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 9988442 36799999999998876665 88999999999999999999999
Q ss_pred hhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEE
Q 012868 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (454)
Q Consensus 209 ~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~ 285 (454)
+.++++|..|+ |.+++. .++++|++|+.+|||+++++ +++++++++|+|+.+ +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~~-----v~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIRR-----VSKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEESS-----EHHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhcccc-----chHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999998765 677774 46788999999999999997 688888889999999 678899999
Q ss_pred EcC--CCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcC
Q 012868 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (454)
Q Consensus 286 ~~~--~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVp 362 (454)
+++ +. +++.+||+|||+|+.+++|++|+++||+++++++++++ +||
T Consensus 321 ~~~~~~~-------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGCL-------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSES-------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred ccccccc-------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 984 32 34689999999999999999999999999999999975 999
Q ss_pred CchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCccccccC----Cch
Q 012868 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPAR----DMF 434 (454)
Q Consensus 363 GGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~--~~~~~~G~d~~~----dm~ 434 (454)
|||++|++|+.+|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++|+. +++.++|||+.+ ||+
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~ 449 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMK 449 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETT
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccc
Confidence 9999999999999888775 899999999999999999999999999999999 99987 345689999987 999
Q ss_pred hcCCccccccHHHHHhhhh
Q 012868 435 KCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 435 ~~gI~Dp~~vk~~al~~A~ 453 (454)
+.|||||+.||+++|+.|+
T Consensus 450 ~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 450 EAGILDPLLVKISALKSAV 468 (485)
T ss_dssp TTTCEEEHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHH
Confidence 9999999999999999986
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-65 Score=495.83 Aligned_cols=400 Identities=19% Similarity=0.229 Sum_probs=340.8
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012868 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (454)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L 84 (454)
-||||.|.+.||+|||| | ++|..||.|+||||||+|+||++||..+.+|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL--v----elS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML--V----ELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH--H----HhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 58999999999999999 5 578999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-c-------ceee--ecCCCccceeEEEeeE
Q 012868 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-D-------LITI--FDRKALYNELNFVKGM 146 (454)
Q Consensus 85 ~~~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~-~-------~I~v--~~g~~~~d~~~~v~G~ 146 (454)
.+|+.|++ |++.|.+-|+||.|+ +..++.+.++|+.++-.. . .|++ +.|+.+ |++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv-dDte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV-DDTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc-chhhhhcce
Confidence 99999887 677799999999874 557899999999987531 1 2444 368877 578999999
Q ss_pred EEeccccCCcccccccccee-----eecCcE------EEEeccc-----cCC-HHHHHHHHHHHHHcCCCEEEEecCcch
Q 012868 147 KLEWGLKSPYFFTHKNKKEC-----VLDGAL------VLIYDTK-----ISN-SNVIRQASLPCMMQGQSLLVVAEDVEN 209 (454)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~-----~l~~~~------Il~~d~~-----i~~-~~~i~~~le~i~~~g~~lvii~~~i~~ 209 (454)
+|++......-+++.++.++ .++.|+ |++.|.. ++. -+.+++++++|+++|+++++++++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 99876543323333333332 234554 3333321 111 134778899999999999999999999
Q ss_pred hHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE----ecceEEE
Q 012868 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA----TMDNVVI 285 (454)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i----~~~~~~~ 285 (454)
++++.|+.|.+.. ++|++||. ..++++|.+|+.+|++++++ ++.++++.||+++.++. ++.+++-
T Consensus 302 davsDLAlHfL~k-lkimvikd-----ieRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKD-----IEREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEcc-----ccHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999888887665 79999994 45678999999999999996 79999999999998864 3447777
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCCc
Q 012868 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGS 364 (454)
Q Consensus 286 ~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~-gvVpGG 364 (454)
+.|..++ |..++|++||++...++|.+|++|||||++|+..+. ..+|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 7776553 568999999999999999999999999999999987 599999
Q ss_pred hHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC----Cchh
Q 012868 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR----DMFK 435 (454)
Q Consensus 365 Gaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~---~~~~~~G~d~~~----dm~~ 435 (454)
|+.|++++..|..++.. .|.+.|++++|++|||.+|.+||+|||+||..+ ..||+ +|..+.|+|+++ ||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999886 899999999999999999999999999999999 99987 466789999999 9999
Q ss_pred cCCccccccHHHHHhhhh
Q 012868 436 CGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 436 ~gI~Dp~~vk~~al~~A~ 453 (454)
..|+.|+.|-.++++.|+
T Consensus 501 e~VvQPllVs~SaitlA~ 518 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLAT 518 (534)
T ss_pred HhcccceeeeHHHHHHHH
Confidence 999999999999999886
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-63 Score=478.01 Aligned_cols=386 Identities=19% Similarity=0.255 Sum_probs=336.4
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012868 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (454)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L 84 (454)
-||||++.+.||+||+| | ++|+-||+|+|||||||+|||++||+||.+|+. .+||+.|++||++|...+.+.|
T Consensus 63 AtILksi~vDnpaAkvL--v----~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL--V----DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe--e----ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999 4 789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc---ceee--ecCCCccceeEEEeeEEE
Q 012868 85 DCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (454)
Q Consensus 85 ~~~s~~v~~-----~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~~---~I~v--~~g~~~~d~~~~v~G~~~ 148 (454)
.+.++..++ +++|.++|+|...+ .++|+++.++|+.++...+ .|.+ ..|+++.| +.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d-SfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED-SFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-cccccccee
Confidence 998876542 47899999876643 5689999999999985433 2443 47888875 668888888
Q ss_pred eccccCCccccccccceeeecCcEEEEecccc--------------CCH-----------HHHHHHHHHHHHcCCCEEEE
Q 012868 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVV 203 (454)
Q Consensus 149 ~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~-----------~~i~~~le~i~~~g~~lvii 203 (454)
++.+- +.+|+ .++||+||+.+++. .+. +.+...+++|.++|.|++|-
T Consensus 216 ~K~ig----v~qpk----riena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIG----VNQPK----RIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccC----CCCcc----cccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 87542 12222 57889988887642 121 24667789999999999988
Q ss_pred ecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEec
Q 012868 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATM 280 (454)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v---~i~~ 280 (454)
.+-|-+...+.|.. .+|++|..++|.. +|||+..|||.++|. |++++...||+|+.+ .+++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 88999999886664 3589999999877 899999999999996 899999999999976 4899
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012868 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (454)
Q Consensus 281 ~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g- 359 (454)
|++.-|.|+.-. ..|||++||+|++.+||.||++|||||+.....++.
T Consensus 352 d~li~FSGv~~G-------------------------------eActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKLG-------------------------------EACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeecccccc-------------------------------cceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 999999998644 359999999999999999999999999999888885
Q ss_pred CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC---
Q 012868 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR--- 431 (454)
Q Consensus 360 vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~--- 431 (454)
+|.|||++||.++..+.+++.. +|++..++++|++||..+|.+||.|||+|+.++ ++||+. |..++|+|+++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999986 999999999999999999999999999999999 999884 66789999999
Q ss_pred -CchhcCCccccccHHHHHhhhh
Q 012868 432 -DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 -dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||.+.||+|+++||+..+.+|+
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sas 503 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSAS 503 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhH
Confidence 9999999999999999998775
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-56 Score=449.60 Aligned_cols=394 Identities=16% Similarity=0.175 Sum_probs=325.6
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
|.|||++++++||++|+| | .++++|+++.||||+++|+||++||++|+++|. |++|.+|+.||+.|.+.+++.
T Consensus 68 aatIlrelev~HPaakll--v----~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL--V----EATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH--H----HHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999 4 689999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCcc-----eee--ecCCCccceeEEEeeEEEec
Q 012868 84 LDCQAR-KITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWENDL-----ITI--FDRKALYNELNFVKGMKLEW 150 (454)
Q Consensus 84 L~~~s~-~v~~~~~l~~va~~s~~-----~~~~l~~li~~A~~~vg~~~~-----I~v--~~g~~~~d~~~~v~G~~~~~ 150 (454)
|.++.. .+.|.++...+++++.+ +++++.+++++|+.++.+.+. |++ -.|+++++ +.++.||+|++
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED-SCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-ceeeEEEEecc
Confidence 999763 22222222244444332 378999999999999987643 444 26888874 78999999998
Q ss_pred cccCCcccccccccee-eecCc-EEEEeccc----cCCHHHHHH-----------HHHHHHHcCCCEEEEecCcchhHHH
Q 012868 151 GLKSPYFFTHKNKKEC-VLDGA-LVLIYDTK----ISNSNVIRQ-----------ASLPCMMQGQSLLVVAEDVENEVLG 213 (454)
Q Consensus 151 g~~~p~~~~~~~~~~~-~l~~~-~Il~~d~~----i~~~~~i~~-----------~le~i~~~g~~lvii~~~i~~~al~ 213 (454)
.....- +..+..++ .+.+| -+.-++.| |++++++++ .++.+..+|.+++|..+.+++++|+
T Consensus 221 ~~eG~v--~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lh 298 (537)
T KOG0362|consen 221 DPEGEV--KSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLH 298 (537)
T ss_pred ccCCcc--cccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhh
Confidence 865431 22222332 44555 34445544 667765553 4667888999999999999999998
Q ss_pred HHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCC
Q 012868 214 DIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSG 290 (454)
Q Consensus 214 ~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i~~~~~~~~~~~~ 290 (454)
++|+ ++|+++|.++. .+|.|||+..||++.++ +..+.++.+|.|++|. ++++.+++|....
T Consensus 299 --flnk----y~ImVlqi~Sk-----~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~ 362 (537)
T KOG0362|consen 299 --FLNK----YKIMVLQINSK-----FDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWES 362 (537)
T ss_pred --hhcc----ccEEEEEeccH-----hhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeecc
Confidence 5565 88999999874 45889999999999996 7888899999999884 6777777665422
Q ss_pred ChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHH
Q 012868 291 ELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALL 369 (454)
Q Consensus 291 ~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVpGGGaael 369 (454)
. .+.++||++||+|+..+|+.||+++|++++.|..++++ ++||+|++|+
T Consensus 363 ~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEi 412 (537)
T KOG0362|consen 363 T------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEI 412 (537)
T ss_pred C------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHH
Confidence 1 13579999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCccccccC-----CchhcCCcc
Q 012868 370 YASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPAR-----DMFKCGDVD 440 (454)
Q Consensus 370 ~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~--~~~~~~G~d~~~-----dm~~~gI~D 440 (454)
++++.|.+|... +|..|+++..|++||+.+|++||+|||++..++ +++.. ++..+.|+|+.. |+.++||||
T Consensus 413 eLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D 492 (537)
T KOG0362|consen 413 ELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWD 492 (537)
T ss_pred HHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHH
Confidence 999999999885 999999999999999999999999999999999 98865 334567777655 999999999
Q ss_pred ccccHHHHHhhhh
Q 012868 441 PLKHVPSEFAKAT 453 (454)
Q Consensus 441 p~~vk~~al~~A~ 453 (454)
-+.+|.++|+.|+
T Consensus 493 ~~~~K~~a~k~at 505 (537)
T KOG0362|consen 493 TLAVKAQAIKLAT 505 (537)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-57 Score=454.85 Aligned_cols=392 Identities=16% Similarity=0.213 Sum_probs=339.0
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012868 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (454)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L 84 (454)
-+||+.+.++||++|+| | ++++.||+|+|||||+++++|++|++.+.+|+. ++||+.|++||+.|+..+++++
T Consensus 62 AtiL~~l~V~HPa~KiL--v----elaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i 135 (545)
T KOG0360|consen 62 ATILSLLEVEHPAAKVL--V----ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYI 135 (545)
T ss_pred HHHHHhhhhcchHHHHH--H----HHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHh
Confidence 58999999999999999 5 579999999999999999999999999999999 9999999999999999999999
Q ss_pred hc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Cc-------ceee--ecCCCccceeEEE
Q 012868 85 DC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-------LITI--FDRKALYNELNFV 143 (454)
Q Consensus 85 ~~-~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~---~~-------~I~v--~~g~~~~d~~~~v 143 (454)
.+ ++.|++ ..+-|.++|+++..+ .++|++++++|+..+.. +| .++| -.|++.. ++.++
T Consensus 136 ~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~-eS~l~ 214 (545)
T KOG0360|consen 136 TEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQI-ESMLL 214 (545)
T ss_pred hccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccch-hheee
Confidence 97 667776 357899999988754 57999999999987642 22 2333 2677765 67899
Q ss_pred eeEEEeccccCCccccccccceeeecCcEEEEeccc-------------cCCHHHHH-----------HHHHHHHHcCCC
Q 012868 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQS 199 (454)
Q Consensus 144 ~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~-----------~~le~i~~~g~~ 199 (454)
.|+.++....+-.|+. .+.+++|.++|.. +.+++++. +.++++..+|++
T Consensus 215 ~GyaLnc~~asq~m~~-------~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~gan 287 (545)
T KOG0360|consen 215 PGYALNCSVASQMMPL-------RIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGAN 287 (545)
T ss_pred cceeeeccHhhhcccc-------ccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCc
Confidence 9999999887776643 5679999999864 44554332 346788999999
Q ss_pred EEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCC-cCCCCCCCceeeeEEE-
Q 012868 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI- 277 (454)
Q Consensus 200 lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~-~~~~~~~~LG~~~~v~- 277 (454)
+|+++++|||.++.+|+.. +++|||+ .++++|++||++||++++++...+. -+.+++..+|+|++|.
T Consensus 288 vVLtt~gIddmc~K~~vea------gamAVrR-----~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvq 356 (545)
T KOG0360|consen 288 VVLTTGGIDDMCLKYFVEA------GAMAVRR-----CKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQ 356 (545)
T ss_pred EEEEcCCccHHHHHHHHHc------chhhhHH-----HHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHH
Confidence 9999999999999999974 4889986 5788999999999999999854332 2356788999999984
Q ss_pred --EecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012868 278 --ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (454)
Q Consensus 278 --i~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a 355 (454)
+++|++.++.+.+.. .|.|++||++++.+||++|++|||+|++|..
T Consensus 357 eri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred HhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 789999999875432 4899999999999999999999999999999
Q ss_pred HHcC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----------C
Q 012868 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-----------D 421 (454)
Q Consensus 356 ~~~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~-----------~ 421 (454)
++++ +|||||++|.+++-+|++|+.. +++||.++..|++||..+|++|+-||+.|+.+. .++++. +
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 9998 9999999999999999999987 899999999999999999999999999999999 999862 1
Q ss_pred CCCccccccC----CchhcCCccccccHHHHHhhhhC
Q 012868 422 SSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATR 454 (454)
Q Consensus 422 ~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~~ 454 (454)
..++|+|..+ |.++.|+++|..+|...|+.|++
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ate 521 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATE 521 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhhhHHHHH
Confidence 2468999987 99999999999999999998863
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-56 Score=439.77 Aligned_cols=387 Identities=18% Similarity=0.237 Sum_probs=326.6
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012868 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (454)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~ 83 (454)
.+++|++||++||++-++ + -++..||+..||||||+|+|.++|+++|..++. |+||..|..||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~lI-----a-kaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASLI-----A-KVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHHH-----H-HHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 589999999999999775 2 468999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC--C----hhHHHHHHHHHHhhcc-Ccce---eee----cCCCccceeEEEeeEEEe
Q 012868 84 LDCQARKITTFEEIAQVGTTAANG--D----GEIGELIAKVFEKGWE-NDLI---TIF----DRKALYNELNFVKGMKLE 149 (454)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~--~----~~l~~li~~A~~~vg~-~~~I---~v~----~g~~~~d~~~~v~G~~~~ 149 (454)
|+..+.++ +.+.|.+||++|.+. + +.+.+++++|+..+.+ ++.| .++ .-++. .+..+++|+++|
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~-~dT~~v~glvLd 210 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSL-HDTSLVQGLVLD 210 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCch-hhhHHhhhhhcc
Confidence 99877776 577899999999985 2 3477788888887752 3322 222 22233 357899999999
Q ss_pred ccccCCccccccccceeeecCcEEEEeccccCCH-------------HH-----------HHHHHHHHHHcC---CCEEE
Q 012868 150 WGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQG---QSLLV 202 (454)
Q Consensus 150 ~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~~-----------i~~~le~i~~~g---~~lvi 202 (454)
||..||.|++ .++|++||++|..+++. +| +.+.+++|.+-+ +.+|+
T Consensus 211 hg~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvv 283 (520)
T KOG0359|consen 211 HGARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVV 283 (520)
T ss_pred CCCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEE
Confidence 9999998854 68999999999765321 11 112334444433 35776
Q ss_pred E-ecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---E
Q 012868 203 V-AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---A 278 (454)
Q Consensus 203 i-~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~---i 278 (454)
| +++|||..|..|+.+ +|+|+|++ ++..||||.++|||..+.+ ++|++|+.||.|+.|. +
T Consensus 284 inqkGidp~sld~~a~~------gIlaLRRA-----KRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tl 347 (520)
T KOG0359|consen 284 INQKGIDPTSLDSLAKS------GILALRRA-----KRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTL 347 (520)
T ss_pred ecccCCCCCcchhhhhc------chHHHHHH-----hhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeec
Confidence 6 579999999988865 48899875 3356999999999999986 8999999999999985 6
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012868 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~ 358 (454)
++++|+|+++|.+|. .|||+++|+|++.+...+++++|+++++++++++
T Consensus 348 GEEkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d 396 (520)
T KOG0359|consen 348 GEEKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLED 396 (520)
T ss_pred cceeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhh
Confidence 899999999999996 4899999999999999999999999999999999
Q ss_pred C-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcC-CCCccccccC---
Q 012868 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQD-SSDLGYNPAR--- 431 (454)
Q Consensus 359 g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~~-~~~~G~d~~~--- 431 (454)
+ ++||+|+.|.+++.+|+..... +++.++|+++|++||..+|++|++|+|+|+.+. .+|..+. ...+|+|..+
T Consensus 397 ~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~ 476 (520)
T KOG0359|consen 397 KCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEE 476 (520)
T ss_pred cccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCc
Confidence 8 9999999999999999987775 999999999999999999999999999999999 8886642 2246999888
Q ss_pred -CchhcCCccccccHHHHHhhhh
Q 012868 432 -DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 -dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
|....||||.+.||++.|.+++
T Consensus 477 ~~~~~~gi~Dny~v~~~~l~s~~ 499 (520)
T KOG0359|consen 477 CDPSRKGIYDNYSVKKQLLRSEA 499 (520)
T ss_pred cchhhccccchHHHHHHHhhhhH
Confidence 7888999999999999988764
No 41
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-54 Score=429.80 Aligned_cols=387 Identities=13% Similarity=0.131 Sum_probs=333.8
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012868 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (454)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L 84 (454)
+.||.+|.+.||+||.+ + .+|.+||+|||||||||++||+|+|..+..+++ |+||+.|++.|.+|++.++..+
T Consensus 62 ~ailrei~Vahpaaksm--i----el~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM--I----ELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH--h----hhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 67999999999999998 5 578889999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-cc-ee------ee--cCCCccceeEEEeeE
Q 012868 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-DL-IT------IF--DRKALYNELNFVKGM 146 (454)
Q Consensus 85 ~~~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~~A~~~vg~~-~~-I~------v~--~g~~~~d~~~~v~G~ 146 (454)
++++.|++ +...+.++...+... ++.++++..+|+++++.+ |. |. ++ +|+.+. ++++++|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 98888776 556777776655532 456889999999999864 32 32 22 688886 57999999
Q ss_pred EEeccccCCccccccccceeeecCcEEEEeccccCC------------------------HHHHHHHHHHHHHcCCCEEE
Q 012868 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLV 202 (454)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d~~i~~------------------------~~~i~~~le~i~~~g~~lvi 202 (454)
.+.+...||.| +..++||+|+++|.++.+ .+++..+++.+..-...||+
T Consensus 215 ~~nkdv~Hpkm-------rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKM-------RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHH-------HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 99999999965 336899999999986531 13455667777777767888
Q ss_pred EecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEEE---
Q 012868 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA--- 278 (454)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~-~~~v~i--- 278 (454)
+.+++++.+.++|..++ +-++|+ .||.+..|++++||++++++ ++|+.+.+.|. |+.+++
T Consensus 288 tekG~sdla~hyl~k~~------iT~~rr-----~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKAN------ITAIRR-----LRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcC------chhhhh-----hhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 88999999999999865 556664 67888999999999999997 89999999995 777764
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012868 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~ 358 (454)
+++.|+||+.|.+|++ |||++||+|...++|.+|.+.||+.+.|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 6778999999999975 999999999999999999999999999999888
Q ss_pred C-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC-
Q 012868 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR- 431 (454)
Q Consensus 359 g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~NAG~d~~~v-~kl~~~---~~~~~G~d~~~- 431 (454)
. +|||||++||.+|+.|.+-+.. ++-+|.-+.+++.||+.+||+|++|+|.|+... ..+++. +...+|+|..+
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 5 9999999999999999986665 899999999999999999999999999999988 777663 44568999888
Q ss_pred ---CchhcCCccccccHHHHHhhhh
Q 012868 432 ---DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 432 ---dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
||.+.|+|+|..||.+..++|.
T Consensus 481 ~iVDm~~~~iwep~~vK~Q~~ktav 505 (527)
T KOG0364|consen 481 VIVDMVELGIWEPEAVKLQTGKTAV 505 (527)
T ss_pred eEeeeeeccccchhhhhhhhhhHHH
Confidence 9999999999999999888775
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-52 Score=402.08 Aligned_cols=293 Identities=18% Similarity=0.195 Sum_probs=268.9
Q ss_pred cCccccccccchhhhhhhhhhcccccCCchhHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 012868 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (454)
Q Consensus 15 ~~p~~~~~~~v~~~~~~s~~qd~evGDGTTt~vvLa~~Ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~v~~ 93 (454)
.|+++|++ + .+|.+||.++|||||.+++|++.+++++.+++. |+||..|..||+.|...++++|.+.+.+++
T Consensus 71 d~~IakLm--v----~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI--V----ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH--H----HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 57888888 4 578999999999999999999999999999999 999999999999999999999999988765
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeeecCCCccceeEEEeeEEEeccccCCccccccccceeeecCcEE
Q 012868 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (454)
Q Consensus 94 ~~~l~~va~~s~~~~~~l~~li~~A~~~vg~~~~I~v~~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~I 173 (454)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeE
Q 012868 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (454)
Q Consensus 174 l~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i 253 (454)
|..++++++++|++|+||+|+|||+|-|.|..|++. |||..+ . -++|-||++|||++
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVG--G---pEiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVG--G---PEIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecC--C---cceEEEEeecCCee
Confidence 556788999999999999999999999999988743 888765 2 25999999999999
Q ss_pred eeCCCCCCcCCCCCCCceeeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHHhhhcCCeEEE
Q 012868 254 LTGGSGMNSTYFVPLKLGSCKRVIA-----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (454)
Q Consensus 254 ~~~~~~~~~~~~~~~~LG~~~~v~i-----~~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRla~l~g~~atI 328 (454)
+.+ |+++++++||+|+.|+. ++|+..+++.|++.++ .||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 997 89999999999998852 4789999999998764 799
Q ss_pred EeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 012868 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (454)
Q Consensus 329 ~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~e~~gi~~~a~AL~~~~~~La~N 406 (454)
.|||++..+++|.+|++|||||++|+.+++. +|+|||++|+.||-.+.+-++. ++.|||++++|++||+++|..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999996 9999999999999999988876 9999999999999999999999999
Q ss_pred cCCChHHH-HHHHhc----CCCCccccccC----CchhcCCccccccHHHHHhhhh
Q 012868 407 AGVDGSVI-DKLLEQ----DSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKAT 453 (454)
Q Consensus 407 AG~d~~~v-~kl~~~----~~~~~G~d~~~----dm~~~gI~Dp~~vk~~al~~A~ 453 (454)
+|++|++. +.+++. .++++|+|+.- ||.+.+++||+..|++.+..|+
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laT 380 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLAT 380 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHH
Confidence 99999999 888762 57889999987 9999999999999999999887
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=1.5e-27 Score=226.19 Aligned_cols=192 Identities=26% Similarity=0.342 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------Ccceeee--cCCCccceeEEEeeEEEeccccCCcccccc
Q 012868 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (454)
Q Consensus 95 ~~l~~va~~s~~-----~~~~l~~li~~A~~~vg~------~~~I~v~--~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~ 161 (454)
+.|.++|++|.+ .++.+++++++|+..+++ .+.|.++ +|+++. ++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999988 578899999999999987 3456665 677765 58999999999999999883
Q ss_pred ccceeeecCcEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhH
Q 012868 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (454)
Q Consensus 162 ~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ 241 (454)
..++||+|++++.+++. ++++.++|++.++++|..+ +|++|++. ++.+
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~~-----~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRRV-----KKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEeC-----CHHH
Confidence 37899999999999876 7777778999999988874 48999974 5678
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcchHHHHHHH
Q 012868 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (454)
Q Consensus 242 ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~~---~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~~l~eRl 318 (454)
|+|||++|||+++++ ++++++++||+|++|++.+ +.++++.+++.+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999996 7888899999999998653 457888877644
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012868 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (454)
Q Consensus 319 a~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~ 358 (454)
+.|||+|||+|+++++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.93 E-value=5.4e-25 Score=215.36 Aligned_cols=198 Identities=12% Similarity=0.148 Sum_probs=162.6
Q ss_pred ChhHHHHHHHHHHhhccC----c------ceeee--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCcEEEE
Q 012868 108 DGEIGELIAKVFEKGWEN----D------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (454)
Q Consensus 108 ~~~l~~li~~A~~~vg~~----~------~I~v~--~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~ 175 (454)
.+.|++++++|+..+.++ + .|++. +|+++. ++++++|++|++.+.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 467999999999988532 1 25554 688885 68999999999998887664 3689999999
Q ss_pred eccccCC------HH-----------HHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccch
Q 012868 176 YDTKISN------SN-----------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (454)
Q Consensus 176 ~d~~i~~------~~-----------~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r 238 (454)
++.++.. +. .+..+++++++.|+++|++.++|++.++++|..+ +|+++++++
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v~----- 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNVK----- 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEecC-----
Confidence 9987643 11 2456688899999999999999999999988874 489999764
Q ss_pred hhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 012868 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (454)
Q Consensus 239 ~~~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i---~~-----~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~ 310 (454)
+.+|+|||++|||+++++. .+++++++||+|+.|++ ++ ++++|+++|+.+.
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~----------------- 219 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKEL----------------- 219 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCc-----------------
Confidence 5679999999999999962 24788889999999875 33 4789999987653
Q ss_pred hHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012868 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (454)
Q Consensus 311 s~~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~a~~~g 359 (454)
.+||+|||+|++.++|.||+++||+++++++..+.
T Consensus 220 --------------~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 220 --------------GCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred --------------eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.8e-07 Score=106.37 Aligned_cols=205 Identities=12% Similarity=0.173 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHhhccC----------cceeee--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCcEEEEec
Q 012868 110 EIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYD 177 (454)
Q Consensus 110 ~l~~li~~A~~~vg~~----------~~I~v~--~g~~~~d~~~~v~G~~~~~g~~~p~~~~~~~~~~~~l~~~~Il~~d 177 (454)
.+..++.+|...+.++ +.+.++ .+|+. .+++++.|+++.+-..+-.|. .++++|+|++..
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M~-------~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRMA-------TKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhhh-------hhccCCceEEEe
Confidence 3556666776666443 124443 56664 579999999999877665554 367889998887
Q ss_pred ccc---------CCHH--------HHHHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhh
Q 012868 178 TKI---------SNSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 240 (454)
Q Consensus 178 ~~i---------~~~~--------~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~ 240 (454)
..+ .+.+ .+...+..|.....+++++.+++++.|..+|.. +++ ..|= +.+..
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I---~lvl-----nvK~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGI---SLVL-----NVKRS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCe---EEEE-----eccHH
Confidence 543 2222 233345555556667899999999999997774 232 2221 34556
Q ss_pred HHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe--------cceEEEEcCCCChhhHHHHHHHHHHHhhhcchH
Q 012868 241 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT--------MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 312 (454)
Q Consensus 241 ~ledla~~tGa~i~~~~~~~~~~~~~~~~LG~~~~v~i~--------~~~~~~~~~~~~~~~i~~ri~~l~~~~~~~~s~ 312 (454)
.|+||++.|||.|+++ ++.++...||+|+.+++. ....+|+.||+.+..
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG------------------ 533 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLG------------------ 533 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCC------------------
Confidence 7999999999999986 677888899999988653 123688999987742
Q ss_pred HHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH-HHHcCCcCCchHHHH
Q 012868 313 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA-AKEEGIVPGSGVALL 369 (454)
Q Consensus 313 ~l~eRla~l~g~~atI~vrG~t~~~l~E~~r~i~DAl~a~k~-a~~~gvVpGGGaael 369 (454)
|||++||++..++++.++-+.=.+-++-. +++.-|+.-=|+...
T Consensus 534 -------------~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 534 -------------CTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -------------ceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 89999999999999999999888877764 466667766666443
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00032 Score=75.36 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCC-EEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHH-HHHHHHhCCeEeeCCCCCCcC
Q 012868 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (454)
Q Consensus 186 i~~~le~i~~~g~~-lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l-edla~~tGa~i~~~~~~~~~~ 263 (454)
+..+++++.+.|.+ ++|++++|+|.+.++|..+ .|++++++. ++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v~-----~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRVK-----KEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecceec-----chhhHHHHHHccCceEEee-----cc
Confidence 44556678889999 7888999999999988875 488888764 3557 79999999999996 79
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCC
Q 012868 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSG 290 (454)
Q Consensus 264 ~~~~~~LG~--~~~v~i---~~~~~~~~~~~~ 290 (454)
+.++..+|. |+.|+. ++++++++.++.
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhh
Confidence 999999999 998864 355666766654
No 47
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=46.25 E-value=39 Score=36.68 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=29.1
Q ss_pred HHHHHhhccCcceeeecCCCccc-eeEEEeeEEEeccccCCccccc
Q 012868 116 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFTH 160 (454)
Q Consensus 116 ~~A~~~vg~~~~I~v~~g~~~~d-~~~~v~G~~~~~g~~~p~~~~~ 160 (454)
.+++..++.++.+.+.++..+.+ .+.-+.|..++.+|+.|+|+.+
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~ 223 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILE 223 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEe
Confidence 44555556666666665544433 4555568889999999888653
No 48
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=45.48 E-value=7.5 Score=42.10 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=50.3
Q ss_pred HcCCCEEEEecCcch-----hHHHHHHhcccCCC----ccEEEEEeCCCccchhhHHHHHHHHhCCeEeeC
Q 012868 195 MQGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (454)
Q Consensus 195 ~~g~~lvii~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~ 256 (454)
+...|+.+..+++++ +++..++.|+.++. .++++++.| +++.+.+.|+|..++++.++...
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 334588999999999 88888888887664 389999988 99999999999999998876654
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=43.12 E-value=89 Score=25.26 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCe
Q 012868 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (454)
Q Consensus 190 le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~ 252 (454)
++.+.+....+|++++|+++.....+..--.+ .+|-.+..|+ +++|-++||-.
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~vv~~l~~lcee--k~Ip~v~V~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVYLMTRVLSQINQ--KNIPVSFFKS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEECC--------HHHHHHHhCCC
Confidence 44454555679999999999887655421111 1233344432 67888888854
No 50
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=32.20 E-value=1.3e+02 Score=24.01 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCEEEEec-CcchhHHHHHHhcccCCCccEEEEEeCC-CccchhhHHHHHHHHhCCeEeeC
Q 012868 188 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (454)
Q Consensus 188 ~~le~i~~~g~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~g~~r~~~ledla~~tGa~i~~~ 256 (454)
.+|......-.|++.+.+ ++++..+..+-..-.. ..++=||... ..+.+++..+.|+..|||.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 455655555579998876 7888887755432111 2456666544 23335678889999999999874
No 51
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=31.29 E-value=1e+02 Score=33.35 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=27.6
Q ss_pred HHHHHhhccCcceeeecCCCccceeEEE--eeEEEeccccCCccccc
Q 012868 116 AKVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFTH 160 (454)
Q Consensus 116 ~~A~~~vg~~~~I~v~~g~~~~d~~~~v--~G~~~~~g~~~p~~~~~ 160 (454)
.+++..++.++.+.++.+.+. +.++++ .|..++.+|+.|+|+.+
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~ 212 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLLE 212 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEEe
Confidence 344445555555556554444 346776 48888888888887653
No 52
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=30.47 E-value=2.9e+02 Score=22.95 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhHHHHHHhcccCCCccEEEEEeC-CCccchhhHHHHHHHHhCCeEeeC
Q 012868 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAA-GLAEDRKAIMEDLAILTGGQVLTG 256 (454)
Q Consensus 187 ~~~le~i~~~g~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~-~~g~~r~~~ledla~~tGa~i~~~ 256 (454)
..+|....-+=.|+|.|.+ ++++.++..+-..-.. ...+=||.. ...+.+++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~--hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEH--HELIKVKIATEDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHH--CCcEEEEecCCChhHHHHHHHHHHHHHCCEEEee
Confidence 4566665555579998875 8999888755432111 123344432 223446778899999999998863
No 53
>smart00574 POX domain associated with HOX domains.
Probab=28.79 E-value=92 Score=27.66 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCcCCchHHHHHHHHHHHH
Q 012868 336 AEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (454)
Q Consensus 336 ~~l~E~~r~i~DAl~a~k~a~~~-gvVpGGGaael~~s~~L~~ 377 (454)
..++|.+++++--..-++..+.. ..|+|+|++-.+.+-+|+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 36788888888888888877776 4889999988887766653
No 54
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.90 E-value=32 Score=36.58 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHcCCcCCchHHHHHHHHHHHHHc
Q 012868 343 LKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQ 379 (454)
Q Consensus 343 r~i~DAl~a~k~a~~~gvVpGGGaael~~s~~L~~~~ 379 (454)
|.+.||+..+|++.+-=+|.|||+-+-.+...|..|+
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~ 253 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFA 253 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHH
Confidence 5677899999988666699999999888888887775
No 55
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=24.04 E-value=1.2e+02 Score=26.11 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCC
Q 012868 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFV 266 (454)
Q Consensus 188 ~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~~~~-~~~~~~ 266 (454)
.+.+.+.++.+|++++..+..... -.+.+..++..+|+.++....+. .+++-.
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~--------------------------a~~~l~~lae~~~~Pv~~t~~~kg~i~~~h 56 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSG--------------------------AAEELRELAEKLGIPVATTPMGKGVIPEDH 56 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTT--------------------------CHHHHHHHHHHHTSEEEEEGGGTTSSTTTS
T ss_pred HHHHHHHhCCCEEEEEcCCcChhh--------------------------HHHHHHHHHHHHCCCEEecCccccccCCCC
Confidence 345566678889998876543210 12468899999999998875333 233344
Q ss_pred CCCceee
Q 012868 267 PLKLGSC 273 (454)
Q Consensus 267 ~~~LG~~ 273 (454)
+..+|..
T Consensus 57 p~~~G~~ 63 (137)
T PF00205_consen 57 PLFLGYL 63 (137)
T ss_dssp TTEEEES
T ss_pred chhcccC
Confidence 5556644
No 56
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.63 E-value=1.1e+02 Score=27.17 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCC
Q 012868 187 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 257 (454)
Q Consensus 187 ~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~i~~~~ 257 (454)
-..++.+.+.|+|++ ++-|+.+.. +..+.|+.++||.++...
T Consensus 66 ~evi~~I~~~G~Pvi-VAtDV~p~P----------------------------~~V~Kia~~f~A~ly~P~ 107 (138)
T PF04312_consen 66 SEVIEWISEYGKPVI-VATDVSPPP----------------------------ETVKKIARSFNAVLYTPE 107 (138)
T ss_pred HHHHHHHHHcCCEEE-EEecCCCCc----------------------------HHHHHHHHHhCCcccCCC
Confidence 345778889999965 555554422 357899999999988864
No 57
>PRK11058 GTPase HflX; Provisional
Probab=23.52 E-value=2.5e+02 Score=29.69 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.7
Q ss_pred hhHHHHHHHHhCCeEeeC
Q 012868 239 KAIMEDLAILTGGQVLTG 256 (454)
Q Consensus 239 ~~~ledla~~tGa~i~~~ 256 (454)
-++|+.||.++|..++..
T Consensus 27 ~~El~~L~~~~g~~v~~~ 44 (426)
T PRK11058 27 LQEFESLVSSAGVEALQV 44 (426)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 467889999999888875
No 58
>PRK00153 hypothetical protein; Validated
Probab=23.28 E-value=3.9e+02 Score=22.12 Aligned_cols=33 Identities=21% Similarity=0.584 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhcchHHHHHHHhhhc------CCeEEEEeccCc
Q 012868 297 ERCEQLRSTIKLSTSDKLKDRLAKLS------GGYAVLKVCGHG 334 (454)
Q Consensus 297 ~ri~~l~~~~~~~~s~~l~eRla~l~------g~~atI~vrG~t 334 (454)
...+.+++++ ++++++|...+ ||..++.+.|.-
T Consensus 10 ~qaq~~q~~~-----~~~q~~l~~~~~~~~s~~G~V~V~v~G~~ 48 (104)
T PRK00153 10 KQAQQMQEKM-----QKMQEELAQMEVEGEAGGGLVKVTMTGKK 48 (104)
T ss_pred HHHHHHHHHH-----HHHHHHHhccEEEEEECCCeEEEEEecCc
Confidence 3444455444 56777777776 888999999864
No 59
>PRK06683 hypothetical protein; Provisional
Probab=22.53 E-value=2.1e+02 Score=22.89 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHHHHHcCCCEEEEecCcchhHHHHHHhcccCCCccEEEEEeCCCccchhhHHHHHHHHhCCe
Q 012868 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (454)
Q Consensus 190 le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tGa~ 252 (454)
++.+.+....+||+++|.++...+.+..- ....+|-.+..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~--~~~~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRT--ALQHNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHH--HHhcCCCEEEEC--------CHHHHHHHhCCc
Confidence 44444445689999999999877654311 000223334332 256888888854
No 60
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=22.30 E-value=4.6e+02 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=17.5
Q ss_pred HHHHHHHhhhc------CCeEEEEeccCc
Q 012868 312 DKLKDRLAKLS------GGYAVLKVCGHG 334 (454)
Q Consensus 312 ~~l~eRla~l~------g~~atI~vrG~t 334 (454)
++++++|+..+ ||..+|.+.|.-
T Consensus 22 ~~~q~eL~~~~v~g~sggGlV~V~~~G~~ 50 (102)
T TIGR00103 22 KKLQEEIAQFEVTGKSGAGLVTVTINGNL 50 (102)
T ss_pred HHHHHHHhccEEEEEECCCEEEEEEEcCc
Confidence 56667777666 788999999864
No 61
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=21.00 E-value=1.3e+02 Score=26.82 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcCCchHHHHHHHHHHHH
Q 012868 337 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDK 377 (454)
Q Consensus 337 ~l~E~~r~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~ 377 (454)
.++|.+++++--..=++..+..- -|.|.|++-.+.+-+|+.
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 56777777777777777666653 788999988888766653
No 62
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.49 E-value=2.8e+02 Score=20.92 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHH
Q 012868 64 ANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKV 118 (454)
Q Consensus 64 ~~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~~A 118 (454)
.+|.++++.++.|-..+.-=++-..+|+.+.++..+++...+ ..+-.+.++|
T Consensus 4 asPv~LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~---~kLe~ma~~a 55 (61)
T PF07131_consen 4 ASPVDLRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLS---QKLERMAAEA 55 (61)
T ss_pred ccHHHHHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHH---HHHHHHHHHH
Confidence 579999888888864443333334467778777777654333 2455555544
Done!