BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012869
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HBW|A Chain A, Crystal Structure Of A Putative Endopeptidase (ava_3396)
From Anabaena Variabilis Atcc 29413 At 1.05 A Resolution
Length = 235
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 28/128 (21%)
Query: 75 NLEGDLQSGAIAGYSLLWLL-----------LWATAVGLLVQLLSARLGVATGRHLAELC 123
NLE +QS Y L L AVG +Q+ S + G A LC
Sbjct: 5 NLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAV---EVCLC 61
Query: 124 REEYPSWARM----------VLWVMAELALIGSDIQEVIGSAIAI--KILSNGILPLWSG 171
++YP W + VL+ + S+I++++ AIA K LW G
Sbjct: 62 EDDYPGWLSLGDLGLLKPATVLYQAKSFSE--SEIKKLLPGAIAFTQKAXQQSNYYLWGG 119
Query: 172 VVITALDC 179
V DC
Sbjct: 120 TVGPNYDC 127
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
+L A + + + + +L + E+P+W L+ A+L LIG I+ VI
Sbjct: 267 MLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVI 313
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
+L A + + + +L + E+P+W L+ A L LIG I+ VI
Sbjct: 267 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVI 313
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
+L A + + + +L + E+P+W L+ A L LIG I+ VI
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVI 314
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
+L A + + + +L + E+P+W L+ A L LIG I+ VI
Sbjct: 267 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVI 313
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
+L A + + + +L + E+P+W L+ A L LIG I+ VI
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVI 314
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
+L A + + + +L + E+P+W L+ A L LIG I+ VI
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVI 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,657,704
Number of Sequences: 62578
Number of extensions: 489612
Number of successful extensions: 1115
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 12
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)