Query 012869
Match_columns 454
No_of_seqs 198 out of 1266
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 2.9E-96 6E-101 739.2 25.8 396 47-449 19-431 (503)
2 PRK00701 manganese transport p 100.0 1.4E-81 3.1E-86 655.5 17.5 395 48-453 25-425 (439)
3 TIGR01197 nramp NRAMP (natural 100.0 9.5E-78 2.1E-82 616.8 13.5 372 54-432 1-390 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 7.6E-76 1.6E-80 602.5 17.6 392 48-453 8-401 (416)
5 PF01566 Nramp: Natural resist 100.0 5.3E-68 1.1E-72 542.5 14.9 356 76-439 1-358 (358)
6 TIGR00813 sss transporter, SSS 98.0 1.4E-05 3E-10 83.4 8.3 115 67-186 15-134 (407)
7 PF03222 Trp_Tyr_perm: Tryptop 98.0 1.8E-05 4E-10 82.3 8.1 151 66-220 12-169 (394)
8 PRK15132 tyrosine transporter 98.0 1.8E-05 3.9E-10 82.6 7.8 159 58-220 4-169 (403)
9 TIGR02119 panF sodium/pantothe 97.9 9.3E-05 2E-09 78.8 12.8 113 67-181 52-170 (471)
10 PF00474 SSF: Sodium:solute sy 97.9 6.3E-06 1.4E-10 85.8 3.5 112 68-181 19-133 (406)
11 PRK09442 panF sodium/panthothe 97.7 0.00012 2.5E-09 78.4 9.5 112 68-181 54-171 (483)
12 PRK13629 threonine/serine tran 97.6 0.00022 4.8E-09 74.8 8.8 149 67-220 29-187 (443)
13 PRK15419 proline:sodium sympor 97.5 0.00014 3.1E-09 78.1 5.8 118 67-186 52-178 (502)
14 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.00019 4.1E-09 76.8 6.4 116 69-186 50-174 (487)
15 COG1457 CodB Purine-cytosine p 97.4 0.01 2.2E-07 62.4 17.9 120 90-214 54-173 (442)
16 PF01235 Na_Ala_symp: Sodium:a 97.3 0.00025 5.5E-09 73.9 5.2 141 68-213 30-181 (416)
17 PRK09664 tryptophan permease T 97.2 0.0016 3.4E-08 68.2 9.6 150 58-215 10-170 (415)
18 PRK09395 actP acetate permease 97.1 0.0014 3.1E-08 71.2 9.0 118 66-186 80-200 (551)
19 PRK10483 tryptophan permease; 97.1 0.0012 2.5E-08 69.1 7.7 151 57-215 11-171 (414)
20 TIGR00814 stp serine transport 97.1 0.0028 6.1E-08 66.2 10.3 125 91-219 33-170 (397)
21 PRK12488 acetate permease; Pro 97.1 0.0017 3.7E-08 70.6 8.6 119 65-186 77-198 (549)
22 TIGR02711 symport_actP cation/ 97.0 0.0077 1.7E-07 65.6 12.5 117 67-186 79-198 (549)
23 TIGR00837 araaP aromatic amino 96.8 0.0064 1.4E-07 62.7 9.8 35 100-136 44-78 (381)
24 COG0591 PutP Na+/proline sympo 96.8 0.019 4.2E-07 61.6 13.3 113 71-185 52-172 (493)
25 TIGR02358 thia_cytX probable h 96.7 0.052 1.1E-06 56.5 16.0 119 88-210 29-151 (386)
26 COG3949 Uncharacterized membra 96.7 0.009 1.9E-07 60.0 9.4 117 84-204 32-149 (349)
27 PRK11375 allantoin permease; P 96.7 0.076 1.6E-06 57.0 17.3 47 88-134 60-106 (484)
28 PF02133 Transp_cyt_pur: Perme 96.7 0.0055 1.2E-07 64.5 8.3 47 89-135 43-89 (440)
29 TIGR03648 Na_symport_lg probab 96.6 0.0056 1.2E-07 66.6 7.7 114 67-185 44-162 (552)
30 COG0733 Na+-dependent transpor 96.5 0.023 5.1E-07 59.4 11.2 145 187-352 160-322 (439)
31 TIGR00800 ncs1 NCS1 nucleoside 96.4 0.061 1.3E-06 56.9 14.3 48 88-135 47-94 (442)
32 PRK10249 phenylalanine transpo 96.4 0.062 1.3E-06 57.1 14.0 70 59-134 30-102 (458)
33 PRK11049 D-alanine/D-serine/gl 96.4 0.042 9E-07 58.5 12.8 33 100-134 69-101 (469)
34 PRK11017 codB cytosine permeas 96.3 0.42 9.1E-06 50.0 19.3 116 89-210 43-159 (404)
35 COG4145 PanF Na+/panthothenate 96.1 0.047 1E-06 55.8 10.4 117 67-188 51-176 (473)
36 TIGR00835 agcS amino acid carr 95.8 0.015 3.3E-07 61.0 6.1 39 320-361 323-361 (425)
37 TIGR00905 2A0302 transporter, 95.8 0.14 2.9E-06 54.7 13.4 38 96-134 53-90 (473)
38 PRK15049 L-asparagine permease 95.7 0.22 4.7E-06 53.6 14.3 71 60-134 38-109 (499)
39 COG4147 DhlC Predicted symport 95.6 0.34 7.4E-06 51.1 14.6 76 108-185 95-171 (529)
40 PRK10238 aromatic amino acid t 95.4 0.33 7.2E-06 51.5 14.5 144 50-199 13-157 (456)
41 COG0814 SdaC Amino acid permea 95.4 0.14 3.1E-06 53.7 11.6 125 93-220 45-177 (415)
42 PRK11021 putative transporter; 95.3 0.36 7.7E-06 50.3 14.1 37 95-133 43-79 (410)
43 PRK11387 S-methylmethionine tr 95.3 0.3 6.6E-06 51.9 13.7 60 70-133 35-95 (471)
44 COG1115 AlsT Na+/alanine sympo 95.1 0.32 6.9E-06 51.1 12.7 43 321-366 341-383 (452)
45 PRK10484 putative transporter; 95.1 0.18 4E-06 54.5 11.6 66 68-133 51-117 (523)
46 TIGR01773 GABAperm gamma-amino 95.1 0.2 4.2E-06 53.0 11.5 38 95-134 56-93 (452)
47 TIGR00796 livcs branched-chain 94.8 0.33 7.2E-06 50.4 12.0 32 319-353 257-288 (378)
48 TIGR00911 2A0308 L-type amino 94.6 1.1 2.4E-05 48.0 16.0 46 87-134 77-125 (501)
49 TIGR03810 arg_ornith_anti argi 94.4 0.95 2.1E-05 48.1 14.7 39 95-134 46-84 (468)
50 TIGR00913 2A0310 amino acid pe 94.1 3.8 8.2E-05 43.6 18.5 61 70-134 23-85 (478)
51 TIGR00910 2A0307_GadC glutamat 94.0 1.4 3.1E-05 47.4 15.3 49 84-133 29-82 (507)
52 TIGR00907 2A0304 amino acid pe 94.0 1 2.3E-05 47.9 14.0 20 95-114 58-77 (482)
53 COG1113 AnsP Gamma-aminobutyra 93.4 1.2 2.5E-05 47.1 12.5 125 71-200 29-159 (462)
54 PF13520 AA_permease_2: Amino 93.3 0.45 9.8E-06 49.5 9.7 35 321-358 262-296 (426)
55 TIGR00908 2A0305 ethanolamine 93.0 2.5 5.5E-05 44.4 14.8 37 96-134 52-88 (442)
56 PF05525 Branch_AA_trans: Bran 92.3 2.7 5.9E-05 44.3 13.7 68 69-138 15-83 (427)
57 TIGR00930 2a30 K-Cl cotranspor 92.2 1.9 4.1E-05 50.2 13.4 28 334-361 386-413 (953)
58 PRK10746 putative transport pr 92.0 2 4.3E-05 45.7 12.5 37 95-133 54-90 (461)
59 COG0833 LysP Amino acid transp 91.9 3.6 7.9E-05 44.3 14.1 139 60-211 60-203 (541)
60 PF00324 AA_permease: Amino ac 91.7 0.4 8.6E-06 51.0 6.8 37 321-360 278-314 (478)
61 PRK10197 gamma-aminobutyrate t 91.7 4.4 9.6E-05 42.8 14.6 37 96-134 37-73 (446)
62 TIGR03428 ureacarb_perm permea 91.5 3.2 7E-05 44.2 13.6 50 82-133 45-94 (475)
63 TIGR00909 2A0306 amino acid tr 90.9 3.1 6.6E-05 43.5 12.4 37 96-134 48-84 (429)
64 PRK10655 potE putrescine trans 90.5 4.5 9.8E-05 42.4 13.4 36 96-133 50-85 (438)
65 PRK11357 frlA putative fructos 90.0 3.7 8E-05 43.2 12.2 50 82-133 39-90 (445)
66 PRK10644 arginine:agmatin anti 89.7 4.2 9.2E-05 42.8 12.3 37 95-133 51-87 (445)
67 PF02554 CstA: Carbon starvati 89.3 2.8 6.2E-05 43.2 10.1 63 72-136 67-133 (376)
68 PRK10435 cadB lysine/cadaverin 89.2 8.6 0.00019 40.4 14.2 36 95-133 48-83 (435)
69 KOG1303 Amino acid transporter 88.7 5.4 0.00012 42.3 12.1 18 237-254 231-248 (437)
70 TIGR03813 put_Glu_GABA_T putat 88.6 13 0.00029 39.4 15.3 50 82-133 24-78 (474)
71 KOG1289 Amino acid transporter 88.2 5.2 0.00011 43.2 11.5 25 430-454 446-470 (550)
72 PF03845 Spore_permease: Spore 87.7 9.6 0.00021 38.2 12.8 43 93-135 37-80 (320)
73 PRK10836 lysine transporter; P 87.4 8.2 0.00018 41.3 12.8 44 70-116 36-81 (489)
74 COG1953 FUI1 Cytosine/uracil/t 87.1 16 0.00036 39.1 14.4 138 72-210 53-213 (497)
75 COG1114 BrnQ Branched-chain am 86.4 18 0.00039 38.0 13.8 69 68-137 16-84 (431)
76 TIGR00912 2A0309 spore germina 86.3 22 0.00048 36.1 14.8 101 95-207 45-151 (359)
77 PRK10580 proY putative proline 85.9 11 0.00023 40.0 12.6 38 95-134 53-90 (457)
78 PRK15015 carbon starvation pro 85.2 3 6.5E-05 45.9 7.9 53 82-135 107-163 (701)
79 PRK15433 branched-chain amino 77.6 20 0.00043 38.1 10.6 74 64-138 15-88 (439)
80 KOG1304 Amino acid transporter 74.0 1.3E+02 0.0028 32.1 20.2 46 400-445 384-430 (449)
81 COG0531 PotE Amino acid transp 72.9 28 0.00061 36.3 10.5 34 320-356 275-308 (466)
82 COG1966 CstA Carbon starvation 72.4 16 0.00035 39.5 8.4 55 80-135 74-132 (575)
83 TIGR00906 2A0303 cationic amin 71.9 55 0.0012 35.8 12.8 27 333-359 312-338 (557)
84 PRK03557 zinc transporter ZitB 49.0 90 0.0019 31.4 8.7 17 188-204 81-97 (312)
85 PLN03074 auxin influx permease 43.5 2.8E+02 0.0061 29.7 11.8 16 120-135 123-138 (473)
86 PRK15238 inner membrane transp 43.4 1.6E+02 0.0035 31.4 10.1 44 89-133 39-86 (496)
87 KOG1286 Amino acid transporter 39.7 3.1E+02 0.0068 30.1 11.5 40 320-361 305-347 (554)
88 PRK09928 choline transport pro 39.7 1.8E+02 0.0039 32.7 9.8 79 336-423 409-493 (679)
89 PF11654 DUF2665: Protein of u 39.4 49 0.0011 23.9 3.5 37 91-130 10-46 (47)
90 KOG2349 Na+:iodide/myo-inosito 35.5 59 0.0013 35.8 5.1 106 68-179 58-168 (585)
91 PRK09950 putative transporter; 33.9 1.4E+02 0.0031 32.4 7.7 83 335-425 401-489 (506)
92 PF06738 DUF1212: Protein of u 33.7 1.3E+02 0.0027 27.7 6.5 10 157-166 116-125 (193)
93 PRK15433 branched-chain amino 29.5 3.8E+02 0.0083 28.6 9.9 59 119-179 267-325 (439)
94 PF05525 Branch_AA_trans: Bran 27.9 6E+02 0.013 27.0 11.0 60 119-179 263-322 (427)
95 PRK09509 fieF ferrous iron eff 24.3 63 0.0014 32.2 2.9 19 187-205 72-90 (299)
96 PTZ00206 amino acid transporte 22.3 5.7E+02 0.012 27.2 9.8 30 106-135 109-139 (467)
97 TIGR01297 CDF cation diffusion 21.3 1.2E+02 0.0025 29.4 4.0 17 188-204 52-68 (268)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-96 Score=739.17 Aligned_cols=396 Identities=63% Similarity=1.024 Sum_probs=378.4
Q ss_pred CCCCcchhhhhhhcCCCceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhc
Q 012869 47 TAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREE 126 (454)
Q Consensus 47 ~~~~~~~~~~~~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~ 126 (454)
+.++++|||+|+++||||+||+||+||||++|+.|+||++||+|+|+++++++++.++|++++|+|+||||||+|.||++
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 012869 127 YPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 206 (454)
Q Consensus 127 ~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l 206 (454)
||||.+|.+|+++|++++++|++|++|+|+|+|+|++ +|+|+|+++|++|+++++++.|||.|++|.++.+++..|.+
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~--IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai 176 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN--IPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAI 176 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcccceeeeeccCCC---hHHHHhhhceeeEEeccchhhhhhhhhhhcccCCCccchHHHhhhhhhhhh
Q 012869 207 SFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIES 283 (454)
Q Consensus 207 ~f~~~~~~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~~~~~~l~~~~~D~ 283 (454)
||.+++..++|+.+|+..|.++|+.+ ++.+..++|++|++|||||+|+||++||+|+.|++.+.+.+|+.+|..+|+
T Consensus 177 ~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies 256 (503)
T KOG1291|consen 177 SFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES 256 (503)
T ss_pred HHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH
Confidence 99999999999999999998999986 789999999999999999999999999999999988888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh-hccccCccccccc-------------cccchhhhHHHHhCCCcchHHHHHHHhHhhccccc
Q 012869 284 TLALVVSFMINLFVTTVF-AKGFYGTEQANNI-------------GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSS 349 (454)
Q Consensus 284 ~~g~~vs~~i~~~i~~~~-A~~l~~~~~~~~~-------------~~~~a~~~L~~~~G~~~~~a~~lF~igllaag~sS 349 (454)
.+++.+++.||.+++.++ |+.+|++.+.+.. ++.+++..|+..+|+ ++.++|++|+++|||||
T Consensus 257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~---~a~~Ifai~lLasGQSs 333 (503)
T KOG1291|consen 257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGP---AALYIFAIGLLASGQSS 333 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhcc---HHHHHHHHHHHHCCCcc
Confidence 999999999999999998 9999987654322 356678999999998 89999999999999999
Q ss_pred eeeeccchhhhhcccchhhHHHHHHHHHhhccccccceeeEEEecCCcchHHhHHHHHHHHhhccccchhhhhhhhhccc
Q 012869 350 TITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQE 429 (454)
Q Consensus 350 ~it~~~ag~~i~~~~l~~~~~~~~~~~~~~~~~~~pa~~v~~~~g~~~~~l~~l~~~~~v~~~~~lP~~~~~ll~l~n~k 429 (454)
++|+||+||++||||+||+++||.||++||+++++|++++++.+|.. .+.++++++||++++++||+++|++.++++|
T Consensus 334 titgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r 411 (503)
T KOG1291|consen 334 TITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFLNVLQSLQLPFAVIPLLTFTSSR 411 (503)
T ss_pred cceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHHHHHHHHhhhHHHhhHHhhhccH
Confidence 99999999999999999999999999999999999999999988855 3889999999999999999999999999999
Q ss_pred eeeeEEeEcchhHHHHHHHH
Q 012869 430 HIMGTFKIGPILKVCLIIAL 449 (454)
Q Consensus 430 ~img~~~~~~~~~~l~~i~~ 449 (454)
++||+|+|+...+..+|...
T Consensus 412 ~IM~~~~~~~~~~~~~~~~~ 431 (503)
T KOG1291|consen 412 KIMGVFKNGLVTEELTWTVA 431 (503)
T ss_pred HHhhhhccCccceeeeehhe
Confidence 99999999999988887654
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=1.4e-81 Score=655.55 Aligned_cols=395 Identities=39% Similarity=0.677 Sum_probs=361.7
Q ss_pred CCCcchhhhhhhcCCCceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcC
Q 012869 48 APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEY 127 (454)
Q Consensus 48 ~~~~~~~~~~~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~ 127 (454)
+++..+|++++.+|||++++++|+||||++|++|+||+|||+|+|++++++++++++||+++|+|++|||+++|.|||||
T Consensus 25 ~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~ 104 (439)
T PRK00701 25 SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRY 104 (439)
T ss_pred CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHC
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q 012869 128 PSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 207 (454)
Q Consensus 128 g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~ 207 (454)
||+..|++|+.+++++++++++|++|+++++++++| +|.+++++++++++++++++.+++||++||+++.++++|.+|
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g--ip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~~~lv~~m~l~ 182 (439)
T PRK00701 105 PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG--IPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAA 182 (439)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 899999999988777666555677899999999999999999
Q ss_pred HHHhhcccCCCcccceeeeeccC---CCh-HHHHhhhceeeEEeccchhhhhhhhhhhcccCCCccchHHHhhhhhhhhh
Q 012869 208 FAWMFGETKPSGSELLIGILVPK---LSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIES 283 (454)
Q Consensus 208 f~~~~~~~~P~~~~v~~g~~~P~---~~~-~~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~~~~~~l~~~~~D~ 283 (454)
|+++++.++|||+|+++| ++|+ +|+ ++++.++|++|+|+|||++|+||+++|+|+.+. +++..++++|++|+|+
T Consensus 183 f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~-~~~~~~~~l~~~r~Dt 260 (439)
T PRK00701 183 FIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGR-TGEEKREALRFTRIDS 260 (439)
T ss_pred HHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccC-ChHhHHHHHHHHHHHH
Confidence 999999999999999999 7899 874 678999999999999999999999998885443 3445678899999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCccccccccccchhhhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhhhhcc
Q 012869 284 TLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGG 363 (454)
Q Consensus 284 ~~g~~vs~~i~~~i~~~~A~~l~~~~~~~~~~~~~a~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~i~~~ 363 (454)
.+++.+++++|.++++++|.++|+++..+..+..|++++|+|.+|+ ++.++|++|+++||++|++++++++++++|+
T Consensus 261 ~~g~~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G~---~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~ 337 (439)
T PRK00701 261 AIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGA---AAATLFGIALLASGLSSTVVGTLAGQIVMEG 337 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHhH---HHHHHHHHHHHHhHhHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999987754456788999999999998 9999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhccccccceeeEEEec--CCcchHHhHHHHHHHHhhccccchhhhhhhhhccceeeeEEeEcchh
Q 012869 364 FLNLRLKKWLRALITRSCAIVPTIIVALVFD--TSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPIL 441 (454)
Q Consensus 364 ~l~~~~~~~~~~~~~~~~~~~pa~~v~~~~g--~~~~~l~~l~~~~~v~~~~~lP~~~~~ll~l~n~k~img~~~~~~~~ 441 (454)
+++|+.+++.||..++.+.++|++++.+ ++ .+ +.+++.++|++|++++|++++|+++++|||++||+|||+++.
T Consensus 338 ~l~~~~~~~~~~~~~~~~~ii~a~~~~~-~~~~~~---p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~ 413 (439)
T PRK00701 338 FLRLRIPLWVRRLITRGLAMVPALIVIL-LGGELD---PTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWV 413 (439)
T ss_pred HcCCCCChHHHHHHHHHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHH
Confidence 9999988888888888888888876644 44 33 457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 012869 442 KVCLIIALFYIL 453 (454)
Q Consensus 442 ~~l~~i~~~~l~ 453 (454)
|+++|+.+++++
T Consensus 414 ~~~~~~~~~~i~ 425 (439)
T PRK00701 414 KIIAWIIAVLIV 425 (439)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=9.5e-78 Score=616.81 Aligned_cols=372 Identities=47% Similarity=0.803 Sum_probs=334.9
Q ss_pred hhhhhhcCCCceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 54 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 54 ~~~~~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
||+++.+|||++++++|+||||++|++|+||+|||+|+|++++++++++++||+++|+|++|||+++|.||||||||.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhc
Q 012869 134 VLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG 213 (454)
Q Consensus 134 ~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~ 213 (454)
..|+++++++++++++|++|+++|+|+++| +|.|++++++.++++.++++.+++||++||++..++.+|.+||+++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g--~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~ 158 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSH--IPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELF 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999988777766666666778899999999999999999999999
Q ss_pred ccCCCcccceeeeeccCCC---hHHHHhhhceeeEEeccchhhhhhhhhhhcccCCCccchHHH-------------hhh
Q 012869 214 ETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQE-------------ALR 277 (454)
Q Consensus 214 ~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~~~~~-------------~l~ 277 (454)
.++|||+|+++|.++|++| +++++.++|++|||+||||+|+||+++|+|++++++++..++ ..+
T Consensus 159 ~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (390)
T TIGR01197 159 YAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVS 238 (390)
T ss_pred eeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHH
Confidence 9999999999998889865 577899999999999999999999999999988765433222 346
Q ss_pred hhhhhhhHHHHHHHH-HHHHHHHHhhccccCccc-cccccccchhhhHHHHhCCCcchHHHHHHHhHhhccccceeeecc
Q 012869 278 YYSIESTLALVVSFM-INLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTY 355 (454)
Q Consensus 278 ~~~~D~~~g~~vs~~-i~~~i~~~~A~~l~~~~~-~~~~~~~~a~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ 355 (454)
+.|.|+.+++....+ +|.++++++|+.+|+++. .+..++.++++.|||.+|+ ++.++|++|+++||+||++|+++
T Consensus 239 ~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~~G~---~a~~lF~igLlaAG~sS~it~~~ 315 (390)
T TIGR01197 239 FSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFSP---AAGYIFAVGLLAAGQSSGMVGTY 315 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHHhhH---HHHHHHHHHHHHhHHHHHHHHHH
Confidence 678899998877554 899999999999997543 3456788899999999999 89999999999999999999999
Q ss_pred chhhhhcccchhhHHHHHHHHHhhccccccceeeEEEecCCcchHHhHHHHHHHHhhccccchhhhhhhhhccceee
Q 012869 356 AGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIM 432 (454)
Q Consensus 356 ag~~i~~~~l~~~~~~~~~~~~~~~~~~~pa~~v~~~~g~~~~~l~~l~~~~~v~~~~~lP~~~~~ll~l~n~k~im 432 (454)
++|+++++|+||+.++|.|++.+|+++++|++++..+.+.. ++.+++.++|++|++++|++++|+++++|||++|
T Consensus 316 ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~--~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGRE--GLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999887788887665443322 2568899999999999999999999999999998
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-76 Score=602.53 Aligned_cols=392 Identities=39% Similarity=0.642 Sum_probs=362.1
Q ss_pred CCCcchhhhhhhcCCCceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcC
Q 012869 48 APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEY 127 (454)
Q Consensus 48 ~~~~~~~~~~~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~ 127 (454)
.+..++|+.++++|||+++|.+|+||||++|++|+|++|||+|+|++++++++++++|++++|+|++|||+++|.|||||
T Consensus 8 ~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y 87 (416)
T COG1914 8 KKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERY 87 (416)
T ss_pred chHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 33567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q 012869 128 PSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 207 (454)
Q Consensus 128 g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~ 207 (454)
+|+..+++|+.++++++++|++|++|+|+|++++++ +|+.++++++++++++++..+ +||++||+...++.++.+|
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~ 163 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--IPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVIL 163 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 899999999999877665554 6799999999999999999
Q ss_pred HHHhhcccCCCcccceeeeeccCCCh-HHHHhhhceeeEEeccchhhhhhhhhhhcccCCCccchHHHhhhhhhhhhhHH
Q 012869 208 FAWMFGETKPSGSELLIGILVPKLSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLA 286 (454)
Q Consensus 208 f~~~~~~~~P~~~~v~~g~~~P~~~~-~~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~~~~~~l~~~~~D~~~g 286 (454)
|+++++.++|+|+++.++.++|+.|. ++++.+++++|+|+|||++|.||+++|++.. +++..++++|+.++|++++
T Consensus 164 ~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~---~~~~~~~~~~~~~~d~~i~ 240 (416)
T COG1914 164 FVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI---KGEENLRALRYSRIDTIIG 240 (416)
T ss_pred HHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc---cchhHHHHHHHHHHHHHHH
Confidence 99999999999999999988899866 8899999999999999999999999998332 2344678899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCccc-cccccccchhhhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhhhhcccc
Q 012869 287 LVVSFMINLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFL 365 (454)
Q Consensus 287 ~~vs~~i~~~i~~~~A~~l~~~~~-~~~~~~~~a~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~i~~~~l 365 (454)
+....++|.+++++++.++|.++. .+..+.+++.+.+.|.+|+ .+..+|+++++++|++|+++++|+++.+++++.
T Consensus 241 ~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~---~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~ 317 (416)
T COG1914 241 MIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGS---AAFVLFGVALLAAGLSSTVVATYAGQIVMEGFL 317 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhh---HHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhh
Confidence 999999999999999999998875 3455678888999999998 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhccccccceeeEEEecCCcchHHhHHHHHHHHhhccccchhhhhhhhhccceeeeEEeEcchhHHHH
Q 012869 366 NLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCL 445 (454)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~pa~~v~~~~g~~~~~l~~l~~~~~v~~~~~lP~~~~~ll~l~n~k~img~~~~~~~~~~l~ 445 (454)
+++.++|.||..++++.++|+.++.+.+| + +..++.++|+++++++|++++|++.+++||++||+|+|++|.++++
T Consensus 318 ~~~~~~~~r~~i~~~~~~ip~~~i~i~~g-~---~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~ 393 (416)
T COG1914 318 NWRIPLWRRRLITRTFAIVPGLAIIILFG-D---PARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLG 393 (416)
T ss_pred cccCchHhhHHHHHHHHHHHHHHHHHHHc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHH
Confidence 99999999999999998999777767777 4 4588999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 012869 446 IIALFYIL 453 (454)
Q Consensus 446 ~i~~~~l~ 453 (454)
|+..+++.
T Consensus 394 ~~v~~~i~ 401 (416)
T COG1914 394 WIVVILIV 401 (416)
T ss_pred HHHHHHHH
Confidence 99988764
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=5.3e-68 Score=542.55 Aligned_cols=356 Identities=36% Similarity=0.582 Sum_probs=318.6
Q ss_pred CcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHH
Q 012869 76 LEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSA 155 (454)
Q Consensus 76 i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~a 155 (454)
|+|++|+||+|||+|+|+++++++++|++||+++|+|++|||++.|++||||||++.+++++..+++++.++.+|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeeccCCCh-H
Q 012869 156 IAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSS-K 234 (454)
Q Consensus 156 ial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~~~~P~~~~v~~g~~~P~~~~-~ 234 (454)
+++++++| +|.+.+++++++.+++++++.+.+||++||++++++.+|.+||+++++.++|||+++.+|++.|++|. +
T Consensus 81 ~al~ll~g--~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~ 158 (358)
T PF01566_consen 81 IALNLLFG--IPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPG 158 (358)
T ss_pred HHHHhhcC--CCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchh
Confidence 99999986 89999999999888887774455569999999999999999999999999999999999987799998 9
Q ss_pred HHHhhhceeeEEeccchhhhhhhhhhhcccCCCccchHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccCccccccc
Q 012869 235 TIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNI 314 (454)
Q Consensus 235 ~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~~~~~~l~~~~~D~~~g~~vs~~i~~~i~~~~A~~l~~~~~~~~~ 314 (454)
++..++|++|||++||++|+||+++++|+++++++++ ++++|++|+|+.+|+++++++|.++++++|.++|+.+. +..
T Consensus 159 ~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~-~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~-~~~ 236 (358)
T PF01566_consen 159 SLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRP-DEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGS-EVE 236 (358)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chh
Confidence 9999999999999999999999999999988643211 26799999999999999999999999999999994332 456
Q ss_pred cccchhhhHHHHhC-CCcchHHHHHHHhHhhccccceeeeccchhhhhcccchhhHHHHHHHHHhhccccccceeeEEEe
Q 012869 315 GLVNAGQYLQEKYG-GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVF 393 (454)
Q Consensus 315 ~~~~a~~~L~~~~G-~~~~~a~~lF~igllaag~sS~it~~~ag~~i~~~~l~~~~~~~~~~~~~~~~~~~pa~~v~~~~ 393 (454)
+..|+++.|+|.+| + |++++|++|+++|+|||++++++++++.++++++++.+++.|+..++...+.|+.++.+..
T Consensus 237 ~~~~~~~~L~~~~G~~---~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (358)
T PF01566_consen 237 TAAQAAQALEPLLGSP---WARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLI 313 (358)
T ss_pred hHHHHHHHHHHhcCch---HHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999 8 9999999999999999999999999999999999987776666555555555555443333
Q ss_pred cCCcchHHhHHHHHHHHhhccccchhhhhhhhhccceeeeEEeEcc
Q 012869 394 DTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGP 439 (454)
Q Consensus 394 g~~~~~l~~l~~~~~v~~~~~lP~~~~~ll~l~n~k~img~~~~~~ 439 (454)
+.+.. +.++++++|++|++.+|++.+|+++++|||++||+|||+|
T Consensus 314 ~~~~~-~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 314 GAPGA-PVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 33321 4688999999999999999999999999999999999986
No 6
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.02 E-value=1.4e-05 Score=83.38 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=76.3
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHHHHHH----HHHHHHHHHHHhhhccchhhHHHhhhcCCc-hHHHHHHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATA----VGLLVQLLSARLGVATGRHLAELCREEYPS-WARMVLWVMAEL 141 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~----~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~-~~~~~l~~~~~l 141 (454)
.+...+.+........+-++|+...|..+-..+ ..+.+...--|.+ ..+..|.+++||++ ..+....+...+
T Consensus 15 ~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~~~i~ 91 (407)
T TIGR00813 15 FASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVLSLIL 91 (407)
T ss_pred HHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHHHHHH
Confidence 345678888888888888999888775443322 3333333333434 56899999999998 455543333344
Q ss_pred HHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 012869 142 ALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (454)
Q Consensus 142 ~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~ 186 (454)
..+.....++.|.+..++.++| +|.+.++++.++.+.+....+
T Consensus 92 ~~~~~~~~q~~g~~~il~~~~g--i~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 92 YIFLYMSVDLFSGALLIELITG--LDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHc
Confidence 4455556678888888888888 899988877776544433443
No 7
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.97 E-value=1.8e-05 Score=82.34 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=85.4
Q ss_pred EEeeecCCCCCccccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--chhhHHHhhhcCCchHHHHHHHHHHHH
Q 012869 66 MSIAFLDPGNLEGDLQ-SGAIAGYSLLWLLLWATAVGLLVQLLSARLGVAT--GRHLAELCREEYPSWARMVLWVMAELA 142 (454)
Q Consensus 66 ~a~a~idpG~i~t~~~-aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vT--G~~l~e~~r~~~g~~~~~~l~~~~~l~ 142 (454)
++...+|+|=+.-=.+ +++-|.+. +..++++-++++.-+.+.+|.-.-+ |.++.+..+|++||+++++.++...+.
T Consensus 12 i~GTaIGAGmLaLP~~~~~~Gf~~~-~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~ 90 (394)
T PF03222_consen 12 IAGTAIGAGMLALPIATAGAGFLPS-LILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFL 90 (394)
T ss_pred HHHccHhHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3344455554444333 33444444 4445555566677777777777765 778999999999998887655432222
Q ss_pred HhcccHHHHHhHHHHHHHHhc----CccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 012869 143 LIGSDIQEVIGSAIAIKILSN----GILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPS 218 (454)
Q Consensus 143 ~i~~~i~e~iG~aial~ll~g----g~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~~~~P~ 218 (454)
.-+...+-..|.+--+.-+++ ...|.+.+..+..+....+++. |.|.++|+..+++..|.++|+......-|+
T Consensus 91 ~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~---g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~ 167 (394)
T PF03222_consen 91 LYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF---GTKAVDRINRVLVFGMIISFIILVVYLIPH 167 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211112222222222222222 1245565554444332223333 337999999999999999998777666566
Q ss_pred cc
Q 012869 219 GS 220 (454)
Q Consensus 219 ~~ 220 (454)
|.
T Consensus 168 ~~ 169 (394)
T PF03222_consen 168 WN 169 (394)
T ss_pred cC
Confidence 53
No 8
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.97 E-value=1.8e-05 Score=82.56 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=85.0
Q ss_pred hhcCCCceEEeeecCCCCCcccccccch-hhhHHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhHHHhhhcCCchHHHH
Q 012869 58 LFTGPGFLMSIAFLDPGNLEGDLQSGAI-AGYSLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 58 ~~lGPG~l~a~a~idpG~i~t~~~aGA~-~Gy~LLW~llla~~~~~~~Q~~~aRlg~v--TG~~l~e~~r~~~g~~~~~~ 134 (454)
|.+|-.++++...+|+|-+.==.++|.. |-..+++.++.-..+.+.-.. -+|.-.- .|.++-+..+|++||+.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 4566677777778888877666555553 233333333222223333222 4443222 35678999999999977776
Q ss_pred HHHHHHHHHhcccHHHHHhH-HHHHHHH---hcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 012869 135 LWVMAELALIGSDIQEVIGS-AIAIKIL---SNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (454)
Q Consensus 135 l~~~~~l~~i~~~i~e~iG~-aial~ll---~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~ 210 (454)
.++.-.+.......+=..|. .+--|.+ ++-.+|.+.+.++..+....+++. |.|.++|++.+++..|.++|+.
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~---g~~~v~~~n~~L~~~~ii~~~~ 159 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV---GTSSVDLFNRFLFSAKIIFLVV 159 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 54432222111111111121 1111222 222245555544443332223333 3489999999999999888887
Q ss_pred hhcccCCCcc
Q 012869 211 MFGETKPSGS 220 (454)
Q Consensus 211 ~~~~~~P~~~ 220 (454)
.....-|+|.
T Consensus 160 ~~~~l~p~~~ 169 (403)
T PRK15132 160 MLALMMPHIH 169 (403)
T ss_pred HHHHHHHhcC
Confidence 6666667764
No 9
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.93 E-value=9.3e-05 Score=78.77 Aligned_cols=113 Identities=13% Similarity=0.220 Sum_probs=68.3
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH-HHHHHh---hhc-cchhhHHHhhhcCCc-hHHHHHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQ-LLSARL---GVA-TGRHLAELCREEYPS-WARMVLWVMAE 140 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q-~~~aRl---g~v-TG~~l~e~~r~~~g~-~~~~~l~~~~~ 140 (454)
.++.+++++.......+.++|+...|......++.+++. .++.|+ +-- .-.++.|.+++|||+ ..+++..+...
T Consensus 52 ~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i 131 (471)
T TIGR02119 52 VATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISLL 131 (471)
T ss_pred HHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHHH
Confidence 345677777777777788888764333222222222211 122222 211 236899999999995 44555444333
Q ss_pred HHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhh
Q 012869 141 LALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFI 181 (454)
Q Consensus 141 l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~ 181 (454)
+..+.....++.|.+..++.++| +|.+.++++.++.+.+
T Consensus 132 ~~~~~~~~~ql~g~g~~l~~~~g--i~~~~~iii~~~iv~i 170 (471)
T TIGR02119 132 VFFFSAMVAQFIGGARLIESLTG--LSYLTALFIFSSSVLI 170 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
Confidence 44444455678888888888888 8999988777654433
No 10
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.92 E-value=6.3e-06 Score=85.82 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=76.2
Q ss_pred eeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHH-HHHHHHhhhccchhhHHHhhhcCCchH--HHHHHHHHHHHHh
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV-QLLSARLGVATGRHLAELCREEYPSWA--RMVLWVMAELALI 144 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~-Q~~~aRlg~vTG~~l~e~~r~~~g~~~--~~~l~~~~~l~~i 144 (454)
++..++++.......+.++|+.-+|..+-..+...++ --++.|+=.....+..|.+++|||+.. +.+..+...+..+
T Consensus 19 at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~ 98 (406)
T PF00474_consen 19 ATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVFMI 98 (406)
T ss_dssp HHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchhhh
Confidence 4456777788888888899999888776655544433 345777777777899999999999877 5554444444455
Q ss_pred cccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhh
Q 012869 145 GSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFI 181 (454)
Q Consensus 145 ~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~ 181 (454)
.....++.|.+..++.++| +|.+.++++..+.+.+
T Consensus 99 ~~~~~q~~~~~~~~~~~~g--i~~~~~~~i~~~i~~i 133 (406)
T PF00474_consen 99 PYLAAQLVGGGALLSVLFG--IPYNTAILIVGVIVII 133 (406)
T ss_dssp THHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hhhhccccccccchhhccc--hhhhHHHHHHHHHHHH
Confidence 5556788888888888888 8888887777654433
No 11
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.73 E-value=0.00012 Score=78.36 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=66.6
Q ss_pred eeecCCCCCcccccccchhhhHHHHHHHHHHHHHH-HHHHHHHHh---hh-ccchhhHHHhhhcCCch-HHHHHHHHHHH
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGL-LVQLLSARL---GV-ATGRHLAELCREEYPSW-ARMVLWVMAEL 141 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~-~~Q~~~aRl---g~-vTG~~l~e~~r~~~g~~-~~~~l~~~~~l 141 (454)
++..+.++.........++|++..|......+..+ .+..++.|+ +. .-..+..|.+++||++. .++...+...+
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~ 133 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLV 133 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHH
Confidence 44567777777777777888775554332222211 111122222 11 23468999999999864 44443333233
Q ss_pred HHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhh
Q 012869 142 ALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFI 181 (454)
Q Consensus 142 ~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~ 181 (454)
..+.....++.|.+..++.++| +|.+.++++..+.+.+
T Consensus 134 ~~~~~~~~ql~~~g~~l~~~~g--i~~~~~iii~~~iv~i 171 (483)
T PRK09442 134 FFFAAMTAQFIGGARLLETATG--ISYETGLLIFGITVAL 171 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 3344445577788888888888 8999887776654333
No 12
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.59 E-value=0.00022 Score=74.81 Aligned_cols=149 Identities=15% Similarity=0.066 Sum_probs=93.8
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc---chhhHHHhhhcCCchHHHHHHHH---HH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVAT---GRHLAELCREEYPSWARMVLWVM---AE 140 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vT---G~~l~e~~r~~~g~~~~~~l~~~---~~ 140 (454)
+...+|+|=+.-=.++|...=+-.+-+++++.++++.-...-.|.-.-. |.+.-+..+|++||.+..+.++. +.
T Consensus 29 ~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~l 108 (443)
T PRK13629 29 FGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAI 108 (443)
T ss_pred HHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 3446888877777777777766777777777778888777777876654 67899999999999766554332 22
Q ss_pred HHHhccc---HHHHHhHHHHHHHHhcC-ccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhcccC
Q 012869 141 LALIGSD---IQEVIGSAIAIKILSNG-ILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETK 216 (454)
Q Consensus 141 l~~i~~~---i~e~iG~aial~ll~gg-~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~~~~ 216 (454)
....... +++.+..-+ .|. .|. .+|.+...++..+....+++. |-|.++|++.+++..+.++|+...+..-
T Consensus 109 y~ll~aY~~~itn~l~sfl-~~q-l~~~~~~r~l~slifv~~l~~iv~~---G~~~v~kv~~~Lv~~~i~~l~~l~~~Li 183 (443)
T PRK13629 109 CPLLWIYGVTITNTFMTFW-ENQ-LGFAPLNRGFVALFLLLLMAFVIWF---GKDLMVKVMSYLVWPFIASLVLISLSLI 183 (443)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhh-cCcCCccHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 222221111 111 221 246555444433322222333 4489999999999999999988877777
Q ss_pred CCcc
Q 012869 217 PSGS 220 (454)
Q Consensus 217 P~~~ 220 (454)
|+|.
T Consensus 184 P~w~ 187 (443)
T PRK13629 184 PYWN 187 (443)
T ss_pred HHcC
Confidence 8775
No 13
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.48 E-value=0.00014 Score=78.09 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=71.1
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHHHHHHHH-HHHHHHHHHhhhcc-----chhhHHHhhhcCCch---HHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVG-LLVQLLSARLGVAT-----GRHLAELCREEYPSW---ARMVLWV 137 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~-~~~Q~~~aRlg~vT-----G~~l~e~~r~~~g~~---~~~~l~~ 137 (454)
.+++..+.+.......+.++|++..|..+-..+.. +....+..|+-.-+ -.+..|.+++||+++ .+.+..+
T Consensus 52 ~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~i 131 (502)
T PRK15419 52 GASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISAL 131 (502)
T ss_pred HHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHHH
Confidence 34567777777777778888988877654322221 12233455554332 247999999999853 3333222
Q ss_pred HHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 012869 138 MAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (454)
Q Consensus 138 ~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~ 186 (454)
+..+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 132 ~~~~~~~~~~~~ql~~~~~~l~~~~g--i~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 132 VILLFFTIYCASGIVAGARLFESTFG--MSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhh
Confidence 22223333334567778888888888 898888877766544433443
No 14
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.46 E-value=0.00019 Score=76.84 Aligned_cols=116 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred eecCCCCCcccccccchhhhHHHHHHHHHHHHHHH-HHHHHHHhhhcc-----chhhHHHhhhcCCch---HHHHHHHHH
Q 012869 69 AFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLL-VQLLSARLGVAT-----GRHLAELCREEYPSW---ARMVLWVMA 139 (454)
Q Consensus 69 a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~-~Q~~~aRlg~vT-----G~~l~e~~r~~~g~~---~~~~l~~~~ 139 (454)
+++...+.........++|+.-.|...-..+..++ .-.++.|+-..+ -.+..|.+++|||+. .+.+..++.
T Consensus 50 t~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~ 129 (487)
T TIGR02121 50 SDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALII 129 (487)
T ss_pred HHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHH
Confidence 34555555555566677888777765322221111 122334433222 246999999999853 333222222
Q ss_pred HHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 012869 140 ELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (454)
Q Consensus 140 ~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~ 186 (454)
.+..+.....++.|.+..++.++| +|.+.++++..+.+.+....+
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~~g--i~~~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 130 LVFFTIYTSSGLVAGGKLFESTFG--LDYKTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHhh
Confidence 223333334567777777888888 899988887766544433333
No 15
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.01 Score=62.42 Aligned_cols=120 Identities=23% Similarity=0.315 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccc
Q 012869 90 LLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLW 169 (454)
Q Consensus 90 LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~ 169 (454)
-++.+++.++++-++--..+-.|..||.+=...-|..+|++.+++.-+...+..++-..-|.+-.+.+.....+ +|.|
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~--~~~~ 131 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG--LPVW 131 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC--CcHH
Confidence 47888999999999999999999999999988999999998876543332233333222233322222222233 7999
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 012869 170 SGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGE 214 (454)
Q Consensus 170 ~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~~ 214 (454)
+++++.++.+.+... +|||.++++-++.+-.+.+.|++....
T Consensus 132 ~~ili~g~l~~l~~i---fG~r~l~~l~~~a~~~~~~lf~~l~~~ 173 (442)
T COG1457 132 AGILIIGVLMTLVTI---FGYRALHKLERIAVPLLLLLFLYLLAL 173 (442)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888765444333 456777777777777777777765443
No 16
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.32 E-value=0.00025 Score=73.89 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=80.0
Q ss_pred eeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchh---------hHHHhhhcCC-chHHHHHHH
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRH---------LAELCREEYP-SWARMVLWV 137 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~---------l~e~~r~~~g-~~~~~~l~~ 137 (454)
++-+|+||++.-+.|=+.=|-.-+..+.++.+++......-.-++...++. ..--+++.++ ||...++-+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 456888888777666566666666666667777777776666666665543 3334455444 344433222
Q ss_pred HHHHH-HhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhc
Q 012869 138 MAELA-LIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG 213 (454)
Q Consensus 138 ~~~l~-~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~ 213 (454)
+...+ .......+.-.++.+++.-++ +|.|...++.++.+.+ ..+ .|.|++-|+...++=+|.+.|+...+
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~--i~~~~~gi~l~~l~~~-vi~--GGikrI~~v~~~lVP~Ma~~Yi~~~l 181 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFG--IPPWITGIILAILVAL-VIF--GGIKRIAKVSEKLVPFMAILYILGGL 181 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHH-HHH--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 111112222223444555566 7877765555443332 233 34588888888888888888887543
No 17
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.21 E-value=0.0016 Score=68.18 Aligned_cols=150 Identities=12% Similarity=0.052 Sum_probs=85.1
Q ss_pred hhcCCCceEEeeecCCCCCcc-cccccchhhhHHHHHHHHHHH---HHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 58 LFTGPGFLMSIAFLDPGNLEG-DLQSGAIAGYSLLWLLLWATA---VGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 58 ~~lGPG~l~a~a~idpG~i~t-~~~aGA~~Gy~LLW~llla~~---~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
|.+|=.++++...+|+|=+.- ...+|+-|-++.+-.+..-.. -+..+-|..-|.. .|-++....|+..||.+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 578888888888999886643 233444444443332222212 2234677777774 5778889999999997776
Q ss_pred HHHHHH---HHHHhcccHHHHHhHHHHH-HHH---hcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 012869 134 VLWVMA---ELALIGSDIQEVIGSAIAI-KIL---SNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 206 (454)
Q Consensus 134 ~l~~~~---~l~~i~~~i~e~iG~aial-~ll---~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l 206 (454)
+.|+.. ..+...+.++ |.+--+ +.+ .+.++|.+.+.++..+....+++.+ -|.+||+..+++..|.+
T Consensus 88 i~~~~~~fl~Y~Ll~AYis---ggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g---t~~vd~~nr~l~~~~ii 161 (415)
T PRK09664 88 ISGITVAFVLYILTYAYIS---ANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS---SLAASRITSLFLGLKII 161 (415)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHH
Confidence 655532 1222222222 222112 222 2223566654444333333334443 37888888888999988
Q ss_pred HHHHhhccc
Q 012869 207 SFAWMFGET 215 (454)
Q Consensus 207 ~f~~~~~~~ 215 (454)
+|+......
T Consensus 162 ~f~~~~~~l 170 (415)
T PRK09664 162 SFVIVFGSF 170 (415)
T ss_pred HHHHHHHHH
Confidence 888755443
No 18
>PRK09395 actP acetate permease; Provisional
Probab=97.15 E-value=0.0014 Score=71.23 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=76.6
Q ss_pred EEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHH--HHHHHHhhhccchhhHHHhhhcCC-chHHHHHHHHHHHH
Q 012869 66 MSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV--QLLSARLGVATGRHLAELCREEYP-SWARMVLWVMAELA 142 (454)
Q Consensus 66 ~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~--Q~~~aRlg~vTG~~l~e~~r~~~g-~~~~~~l~~~~~l~ 142 (454)
+.+.++.+.+.......+.++|++-.|..+- ..+.+++ -.++.|+=...-.+..|.+++||+ |..+.+..+...+.
T Consensus 80 i~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~ 158 (551)
T PRK09395 80 IAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVV 158 (551)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3455677777777777788888887665432 2222111 123455544445789999999998 55676644444444
Q ss_pred HhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 012869 143 LIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (454)
Q Consensus 143 ~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~ 186 (454)
.+.....++.|.+..++.++| +|.+.++++..+.+.+....+
T Consensus 159 ~~~yl~~q~~g~g~il~~~~g--i~~~~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 159 VALYLIAQMVGAGKLIQLLFG--LNYHVAVVLVGVLMMVYVLFG 200 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhc
Confidence 455556778888888888888 899998888776554444444
No 19
>PRK10483 tryptophan permease; Provisional
Probab=97.13 E-value=0.0012 Score=69.12 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=87.4
Q ss_pred hhhcCCCceEEeeecCCCCCcc-cccccchhhhHHHHHHHHHHHH---HHHHHHHHHHhhhccchhhHHHhhhcCCchHH
Q 012869 57 WLFTGPGFLMSIAFLDPGNLEG-DLQSGAIAGYSLLWLLLWATAV---GLLVQLLSARLGVATGRHLAELCREEYPSWAR 132 (454)
Q Consensus 57 ~~~lGPG~l~a~a~idpG~i~t-~~~aGA~~Gy~LLW~llla~~~---~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~ 132 (454)
.+.+|=-++++...+|+|=+.- ...+|+-|.++.+-.++.-..| +..+-|..-|.. -|.++...-|+..||+++
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 3457777777888888876643 3344555555544333222222 234667777764 466788888888898776
Q ss_pred HHHHHHH---HHHHhcccHHHHHhHHHHHH-HH--hcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 012869 133 MVLWVMA---ELALIGSDIQEVIGSAIAIK-IL--SNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 206 (454)
Q Consensus 133 ~~l~~~~---~l~~i~~~i~e~iG~aial~-ll--~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l 206 (454)
++.|+.. ..+...+.+. |.+--++ .+ .+..+|.+.+.++..+....+++.+ -|.+||+..+++..|.+
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~g---t~~vd~~n~~l~~~~i~ 162 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLS---TKAVSRMTAIVLGAKVI 162 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH
Confidence 6544432 2222222222 2222122 22 2323687777666555434444444 38999999999999988
Q ss_pred HHHHhhccc
Q 012869 207 SFAWMFGET 215 (454)
Q Consensus 207 ~f~~~~~~~ 215 (454)
+|+......
T Consensus 163 ~f~~~~~~l 171 (414)
T PRK10483 163 TFFLTFGSL 171 (414)
T ss_pred HHHHHHHHH
Confidence 888765443
No 20
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.11 E-value=0.0028 Score=66.18 Aligned_cols=125 Identities=13% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----h--hhcc-chhhHHHhhhcCCchHHHHHHHHHH---HHH---hcccHHHHHhHHHH
Q 012869 91 LWLLLWATAVGLLVQLLSAR----L--GVAT-GRHLAELCREEYPSWARMVLWVMAE---LAL---IGSDIQEVIGSAIA 157 (454)
Q Consensus 91 LW~llla~~~~~~~Q~~~aR----l--g~vT-G~~l~e~~r~~~g~~~~~~l~~~~~---l~~---i~~~i~e~iG~aia 157 (454)
.|..+++.+..+++...+.| . .--. ++++.|..++++||+......+.-. ... -+...++..+.-+
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl- 111 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFL- 111 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44555555555555555555 3 4444 7899999999999987765433211 111 1111222222211
Q ss_pred HHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 012869 158 IKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSG 219 (454)
Q Consensus 158 l~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~~~~P~~ 219 (454)
.+ .++.+.|.+... ..+...++....+.|.|.+.|+..+++..+.+.++...+..-|+|
T Consensus 112 ~~-~~~~~~p~~~i~--~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 112 VN-QLGTAPPLRGLL--SLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HH-hcCCCCcHHHHH--HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 112113444211 111112222334456799999999988777777766655555555
No 21
>PRK12488 acetate permease; Provisional
Probab=97.07 E-value=0.0017 Score=70.63 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=78.1
Q ss_pred eEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHH--HHHHHHhhhccchhhHHHhhhcCC-chHHHHHHHHHHH
Q 012869 65 LMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV--QLLSARLGVATGRHLAELCREEYP-SWARMVLWVMAEL 141 (454)
Q Consensus 65 l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~--Q~~~aRlg~vTG~~l~e~~r~~~g-~~~~~~l~~~~~l 141 (454)
-+++.++.+.+.......+..+|++-+|..+ .....+++ ..++.|+=-..-.+..|.+++||+ |+.+.+..+...+
T Consensus 77 si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~i~ 155 (549)
T PRK12488 77 AIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGTLT 155 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3455567777777777778888998877553 22222222 223444433334689999999997 5677765554444
Q ss_pred HHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 012869 142 ALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (454)
Q Consensus 142 ~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~ 186 (454)
..+.....++.|.+..++.++| +|.+.++++.++.+.+....+
T Consensus 156 ~~~~yl~~q~~g~g~il~~l~g--i~~~~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 156 VVLMYLVAQMVGAGKLIELLFG--ISYLYAVVIVGALMVLYVTFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhcc
Confidence 5555556788888888898888 899988877776544433333
No 22
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.97 E-value=0.0077 Score=65.57 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=75.3
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHH--HHHHHHHhhhccchhhHHHhhhcCC-chHHHHHHHHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLL--VQLLSARLGVATGRHLAELCREEYP-SWARMVLWVMAELAL 143 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~--~Q~~~aRlg~vTG~~l~e~~r~~~g-~~~~~~l~~~~~l~~ 143 (454)
++.+.++.+.......+.++|++-+|..+ ..+..++ .-.++.|+-...-.+..|.+++||+ |..+....+...+..
T Consensus 79 ~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~ 157 (549)
T TIGR02711 79 AGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGSLVVV 157 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 44567777777777777888998877542 2222221 1223444443344789999999997 556665444444444
Q ss_pred hcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhh
Q 012869 144 IGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (454)
Q Consensus 144 i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~ 186 (454)
+.....++.|.+..++.++| +|.+.++++..+.+.+....+
T Consensus 158 ~~yl~~ql~g~g~il~~~~g--i~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 158 ALYLIAQMVGAGKLIELLFG--LNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhh
Confidence 44556678888888888888 899998887776554444443
No 23
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=96.80 E-value=0.0064 Score=62.68 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHH
Q 012869 100 VGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLW 136 (454)
Q Consensus 100 ~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~ 136 (454)
..+.+-|++.|.- -+.+..+..|+.+||+..+...
T Consensus 44 ~~l~~~el~~~~p--~~~~~~~~~~~~~G~~~g~~~~ 78 (381)
T TIGR00837 44 SGLLLLEVYLTYP--GGASFNTIAKDLLGKTGNIIAG 78 (381)
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHhCHHHHHHHH
Confidence 3444445555542 1457889999999998877643
No 24
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.76 E-value=0.019 Score=61.65 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=69.8
Q ss_pred cCCCCCcccccccc--hhhhHHHHHHHHHHH-HHHHHHHHHHHhhhcc----chhhHHHhhhcCC-chHHHHHHHHHHHH
Q 012869 71 LDPGNLEGDLQSGA--IAGYSLLWLLLWATA-VGLLVQLLSARLGVAT----GRHLAELCREEYP-SWARMVLWVMAELA 142 (454)
Q Consensus 71 idpG~i~t~~~aGA--~~Gy~LLW~llla~~-~~~~~Q~~~aRlg~vT----G~~l~e~~r~~~g-~~~~~~l~~~~~l~ 142 (454)
.|-|.++---..|. ..|+.-+|..+..++ .-...-..+.|+=..+ =.++.|.+++||+ ++.+.+.-+...+.
T Consensus 52 s~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~ 131 (493)
T COG0591 52 SDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVF 131 (493)
T ss_pred HHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33343333334444 449999997766432 2222333444444445 4589999999999 77777655554555
Q ss_pred HhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhh
Q 012869 143 LIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFL 185 (454)
Q Consensus 143 ~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~ 185 (454)
.+.....++.|.+..++..+| +|.+.+..+.++.+.+.-.+
T Consensus 132 ~i~yia~ql~~~~~~~~~~~g--i~~~~~~~~~~~~v~~Yt~~ 172 (493)
T COG0591 132 FIPYIALQLVAGGLLLSLLFG--ISYVTGILIGALIVALYTFL 172 (493)
T ss_pred HHHHHHHHHHHHHHHhhhhcC--CCHHHHHHHHHHHHHHHHHH
Confidence 555555677788777888887 78888777755544443333
No 25
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.74 E-value=0.052 Score=56.47 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHHHh-cccHHHHHhHHHHHHHHhcC--
Q 012869 88 YSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALI-GSDIQEVIGSAIAIKILSNG-- 164 (454)
Q Consensus 88 y~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~~i-~~~i~e~iG~aial~ll~gg-- 164 (454)
++-+..+++.+++...+--+.++.|..||.+-.-..|..||++...+..++-.+..+ -..++...| +.+++.+.+.
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~g-g~~l~~~~~~~~ 107 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVG-AKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 566778889999999999999999999999999999999998776543332222221 122232332 2233333321
Q ss_pred -ccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 012869 165 -ILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (454)
Q Consensus 165 -~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~ 210 (454)
..+...+..+..+ +.....-+|+|+++++.++..-++.+.+++
T Consensus 108 ~~~~~~~~~~i~~~---l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~ 151 (386)
T TIGR02358 108 GEESPMLWILIVGI---LVTLWLLSGPLAFVWLNNWSVWLLLIATLW 151 (386)
T ss_pred CCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222322222 112222355677777766655555555544
No 26
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.70 E-value=0.009 Score=60.01 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=78.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHh
Q 012869 84 AIAGYSLLWLLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILS 162 (454)
Q Consensus 84 A~~Gy~LLW~llla~~~~~~~Q~~~aRlg~v-TG~~l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~ 162 (454)
..||+.=.|-+.+++++..+.=.....+|-. .-++..|..+.-.|++.....=....+..+.+..-...|++..++..+
T Consensus 32 ~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~ 111 (349)
T COG3949 32 GKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMF 111 (349)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh
Confidence 3689999999999998887777777777765 445677777777777665543333333444444445567766678888
Q ss_pred cCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 012869 163 NGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATM 204 (454)
Q Consensus 163 gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m 204 (454)
| +|.|+|.++......+.++++|- ++++++...++=++
T Consensus 112 ~--lP~wiGali~i~~v~i~lfl~~v--egi~tvn~iI~P~L 149 (349)
T COG3949 112 G--LPYWIGALIIILLVLILLFLGRV--EGIITVNGIITPFL 149 (349)
T ss_pred C--ccHHHHHHHHHHHHHHHHHHhcc--cceeeeheeHHHHH
Confidence 8 99999977776655555666553 77777766544333
No 27
>PRK11375 allantoin permease; Provisional
Probab=96.69 E-value=0.076 Score=56.97 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 88 YSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 88 y~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
++.++.+++++++..++--+.++.|..+|.+-.-..|..||.+...+
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l 106 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALF 106 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchH
Confidence 34577888899999999999999999999999999999999766443
No 28
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.67 E-value=0.0055 Score=64.51 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHH
Q 012869 89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVL 135 (454)
Q Consensus 89 ~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l 135 (454)
+-+..+++.+++..++--..++.|..||.+-....|..||.+.+.+.
T Consensus 43 ~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~ 89 (440)
T PF02133_consen 43 QAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLP 89 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHH
Confidence 45677888899999999999999999999999999999998766543
No 29
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.57 E-value=0.0056 Score=66.63 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=72.1
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHH---H-HHHHHHHHHHHHHHhhhccchhhHHHhhhcCCc-hHHHHHHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLL---W-ATAVGLLVQLLSARLGVATGRHLAELCREEYPS-WARMVLWVMAEL 141 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~ll---l-a~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~-~~~~~l~~~~~l 141 (454)
.++++.+.+.......+.++||+.+|..+ + ..++.+++-...-|.+. .+..|.+++||++ ..++...+...+
T Consensus 44 ~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i~~~~ 120 (552)
T TIGR03648 44 AADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVICAIF 120 (552)
T ss_pred HHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHHHHHH
Confidence 34456666666666667778887766542 1 12234455555556654 4899999999984 455544333334
Q ss_pred HHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhh
Q 012869 142 ALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFL 185 (454)
Q Consensus 142 ~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~ 185 (454)
..+.....++.|.+..++.++| +|.+.++++.++.+.+....
T Consensus 121 ~~~~~l~~ql~~~~~~l~~~~g--i~~~~~iii~~~i~~iYt~~ 162 (552)
T TIGR03648 121 ISFTYVAGQMRGVGVVFSRFLE--VDFETGVFIGMAIVFFYAVL 162 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHh
Confidence 4444445667788888898888 89999887777654443333
No 30
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.49 E-value=0.023 Score=59.38 Aligned_cols=145 Identities=21% Similarity=0.237 Sum_probs=72.1
Q ss_pred ccchhh-HHHHHHHHHHHHHHHHHHhhccc--CCCcccceeeeeccCCC----hHHHHhhhce------eeEEeccchhh
Q 012869 187 NYGVRK-LEAVFAVLIATMALSFAWMFGET--KPSGSELLIGILVPKLS----SKTIQQAVGV------VGCIIMPHNVF 253 (454)
Q Consensus 187 ~yg~~~-lE~~~~~lv~~m~l~f~~~~~~~--~P~~~~v~~g~~~P~~~----~~~l~~~vai------iG~ti~P~~~f 253 (454)
+.|.++ +||..++++=.+.++|+..++.+ .|...|=.+-++.|+.+ .+.+..+.|- +|. --++-
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~---g~mit 236 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGF---GIMIT 236 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHH---HHHHH
Confidence 345444 99999999888888888766543 44433333333445531 1111111111 121 12333
Q ss_pred hhhhhhhhcccCCCccchHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccCccccccccc-----cchhhhHHHHhC
Q 012869 254 LHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGL-----VNAGQYLQEKYG 328 (454)
Q Consensus 254 ~~S~~v~~r~~~~~~~~~~~~~l~~~~~D~~~g~~vs~~i~~~i~~~~A~~l~~~~~~~~~~~-----~~a~~~L~~~~G 328 (454)
|.|++- |+.| -.+........|+.++.+....|--+.-..+.. ..+..++ .++-+++ | +|
T Consensus 237 YsSYL~--k~~~-----l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~------~~~GpgL~Fi~LP~if~~m-p-~G 301 (439)
T COG0733 237 YSSYLS--KKSD-----LVSSALSIVLLNTLISLLAGLVIFPALFSFGAD------ASQGPGLVFIVLPAVFNQM-P-LG 301 (439)
T ss_pred HHhhcC--cccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCCeeehhHHHHHHHhC-c-hh
Confidence 455543 2222 223455555667776666554443333322222 1112222 2222333 2 56
Q ss_pred CCcchHHHHHHHhHhhccccceee
Q 012869 329 GGLFPILYIWGIGLLAAGQSSTIT 352 (454)
Q Consensus 329 ~~~~~a~~lF~igllaag~sS~it 352 (454)
. .-..+|-+.++.|+.||++.
T Consensus 302 ~---~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 302 T---LFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred H---HHHHHHHHHHHHHHHHHHHH
Confidence 5 45568888888888888753
No 31
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.42 E-value=0.061 Score=56.87 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHH
Q 012869 88 YSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVL 135 (454)
Q Consensus 88 y~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l 135 (454)
++-++.+++.+++..++--+.++.|..||.+-....|..||++...+.
T Consensus 47 ~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~ 94 (442)
T TIGR00800 47 WQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLP 94 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHH
Confidence 445678888889999999999999999999999999999998776643
No 32
>PRK10249 phenylalanine transporter; Provisional
Probab=96.37 E-value=0.062 Score=57.06 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=41.1
Q ss_pred hcCCCceEEee-ecCCCCCcccccccchhhhHHHHHH--HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 59 FTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLL--LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 59 ~lGPG~l~a~a-~idpG~i~t~~~aGA~~Gy~LLW~l--lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
.++=|-++..+ ++.||...+. +|.. .-+-|++ ++....++.+.|++.|+=. +| +.....++.+|++..+.
T Consensus 30 ~i~ig~~IGsGif~~~g~~~~~--aGp~--~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~ 102 (458)
T PRK10249 30 LIALGGAIGTGLFLGIGPAIQM--AGPA--VLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFL 102 (458)
T ss_pred hhhhhcccchhHHHHHHHHHHh--cCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHH
Confidence 34544454444 5778876653 4431 2233332 4455566777777777666 45 66777788889866543
No 33
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.37 E-value=0.042 Score=58.52 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 100 VGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 100 ~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
....+-|++...+. .| +..+..++.+|+...+.
T Consensus 69 ~~~s~aEl~s~~~~-~~-~~~~ya~~~~g~~~gf~ 101 (469)
T PRK11049 69 VMRAMGELLLSNLE-YK-SFSDFASDLLGPWAGYF 101 (469)
T ss_pred HHHHHHHHHHhcCC-CC-cHHHHHHHHhCcHHHHH
Confidence 33445566653222 33 45667788888866554
No 34
>PRK11017 codB cytosine permease; Provisional
Probab=96.26 E-value=0.42 Score=50.01 Aligned_cols=116 Identities=14% Similarity=0.114 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHH-HHhcccHHHHHhHHHHHHHHhcCccc
Q 012869 89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAEL-ALIGSDIQEVIGSAIAIKILSNGILP 167 (454)
Q Consensus 89 ~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l-~~i~~~i~e~iG~aial~ll~gg~ip 167 (454)
+-++.+++.+++...+--+.++.|..||.+-....|..||.+...+..++-.+ ...-..++..++ +.+++-++| ++
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~--~~ 119 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATG--LD 119 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhC--CC
Confidence 34677888888889999999999999999999999999998776643222112 111122233332 234444556 55
Q ss_pred cchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 012869 168 LWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (454)
Q Consensus 168 ~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~ 210 (454)
.+.+..+..+...... -+|+|.+|++.++..-.+.+.+++
T Consensus 120 ~~~~~~i~~~l~~~~~---~~G~~~i~~~~~~~~p~~~~~~~~ 159 (404)
T PRK11017 120 INLLIVLSGLLMTVTA---YFGISALTILSRIAVPAIALLGGY 159 (404)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443333222222 234466666666554444444443
No 35
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=96.07 E-value=0.047 Score=55.75 Aligned_cols=117 Identities=18% Similarity=0.330 Sum_probs=66.3
Q ss_pred EeeecCCCCCcccccccchhhhHHHHHHHHHHH-H---HHHHHHHHHHhhhccch----hhHHHhhhcCC-chHHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATA-V---GLLVQLLSARLGVATGR----HLAELCREEYP-SWARMVLWV 137 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~-~---~~~~Q~~~aRlg~vTG~----~l~e~~r~~~g-~~~~~~l~~ 137 (454)
++.|+++++-+..- |+.|.|.+-|+ +++++ + -+..--+.-|+....+| ++-|..|.||- +...|..-+
T Consensus 51 ~aTYisaSSFigGp--gaayk~Glgwv-lLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~ 127 (473)
T COG4145 51 TATYISASSFIGGP--GAAYKYGLGWV-LLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASL 127 (473)
T ss_pred HHHHHHHhhhcCCC--cHHHHhchHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHH
Confidence 34456666555543 66777778884 44432 1 11111122233333222 57788888885 445554333
Q ss_pred HHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhcc
Q 012869 138 MAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENY 188 (454)
Q Consensus 138 ~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~y 188 (454)
...+.-+.....+++|.|=-++...| +|-..+.++.++.+.+.-+.+.+
T Consensus 128 ~Lifff~~~m~~qfiGgarLlE~~~g--idY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 128 SLIFFFVGAMTVQFIGGARLLETALG--IDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHC--CCchhhHHHHHHHHHHHHhhcce
Confidence 33444455556678998776777777 88888888888765544444433
No 36
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.84 E-value=0.015 Score=61.03 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=30.2
Q ss_pred hhhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhhhh
Q 012869 320 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIM 361 (454)
Q Consensus 320 ~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~i~ 361 (454)
.++++..+|. |..++..+.++.-+|||.++..|-+....
T Consensus 323 ~~af~~~~g~---~g~~~v~i~~~lFaftTii~~~yyge~~~ 361 (425)
T TIGR00835 323 QQALSYGLGS---FGAVFVAVALFLFAFSTIIGWYYYGEKNA 361 (425)
T ss_pred HHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567887887 78899999999999999887666544333
No 37
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=95.82 E-value=0.14 Score=54.66 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 96 la~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
...+..+.+-|++.|+-..+| +.-+-.++.+||+..+.
T Consensus 53 ~~~~~al~~aEl~s~~P~~sG-G~y~y~~~~~G~~~gf~ 90 (473)
T TIGR00905 53 GMLALAFVFAILATKKPELDG-GIYAYAREGFGPYIGFM 90 (473)
T ss_pred HHHHHHHHHHHHHhhCCCCCC-ChhhhHHhHcccccHHH
Confidence 344456667777777655333 45667788888865543
No 38
>PRK15049 L-asparagine permease; Provisional
Probab=95.66 E-value=0.22 Score=53.63 Aligned_cols=71 Identities=18% Similarity=0.076 Sum_probs=39.7
Q ss_pred cCCCceEEee-ecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 60 TGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 60 lGPG~l~a~a-~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
++=|-+.+.+ +.+||......-.++-.+| +..-++....+..+-|++.++=. +| +...-.++.+|++..+.
T Consensus 38 i~~G~~IGsGiF~~~g~~~~~aGp~~il~~--li~~i~~~~v~~slaELas~~P~-aG-g~y~y~~~~~G~~~gf~ 109 (499)
T PRK15049 38 IAIGGAIGTGLFLGAGARLQMAGPALALVY--LICGLFSFFILRALGELVLHRPS-SG-SFVSYAREFLGEKAAYV 109 (499)
T ss_pred HhhhccccchHHHhhHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhCcHhHHH
Confidence 4444444444 4677766543333233222 22334455566667788877765 44 56667778788865543
No 39
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.57 E-value=0.34 Score=51.12 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHhhhccchhhHHHhhhcCC-chHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhh
Q 012869 108 SARLGVATGRHLAELCREEYP-SWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFL 185 (454)
Q Consensus 108 ~aRlg~vTG~~l~e~~r~~~g-~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~ 185 (454)
+-|+==.-+-+.+|-+.+||. +..|++..+...+......++++.|++.-+..++| +|..+++.+..+...+...+
T Consensus 95 A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--v~~~vgv~ig~ilm~~Yvv~ 171 (529)
T COG4147 95 AEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--VPYHVGVVIGGILMMVYVVL 171 (529)
T ss_pred HHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--CCceeehhhHhHHHHHHHHh
Confidence 334444445578999999986 57787766655666677778899999999999998 89999888777654433333
No 40
>PRK10238 aromatic amino acid transporter; Provisional
Probab=95.41 E-value=0.33 Score=51.46 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=66.8
Q ss_pred CcchhhhhhhcCCCceEEee-ecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCC
Q 012869 50 PFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (454)
Q Consensus 50 ~~~~~~~~~~lGPG~l~a~a-~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g 128 (454)
..+.|+... ++=|=++..+ ++.||...+..-.++-++|- ..-+........+-|++.|+=. +| +..+-.++.+|
T Consensus 13 ~L~~~~~~~-i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~--i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~g 87 (456)
T PRK10238 13 GLKNRHIQL-IALGGAIGTGLFLGSASVIQSAGPGIILGYA--IAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYWG 87 (456)
T ss_pred cCcHHHHHH-HHhhccccchHHHhhHHHHHhcCcHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHcC
Confidence 344444333 3444444443 57788776654223333321 2223444455566788887775 44 56666777788
Q ss_pred chHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHH
Q 012869 129 SWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAV 199 (454)
Q Consensus 129 ~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~ 199 (454)
++..+...-.-.+........|..+.+.-++..++. .|.|....+..+.+..+-..+...+.++|.++.+
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 876554311111111122233433333334445542 5666544333322111112222224677776544
No 41
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=95.41 E-value=0.14 Score=53.75 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccch---hhHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHH----HHHHHhcCc
Q 012869 93 LLLWATAVGLLVQLLSARLGVATGR---HLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAI----AIKILSNGI 165 (454)
Q Consensus 93 ~llla~~~~~~~Q~~~aRlg~vTG~---~l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~ai----al~ll~gg~ 165 (454)
.++++-++.+.-+++-.|.-.-+++ +..+..++++||+++++..+...+...+...+=..+.+- -++..++..
T Consensus 45 ~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~ 124 (415)
T COG0814 45 LLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN 124 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC
Confidence 3355557777777777777666554 789999999999888765433222221111111111110 011112222
Q ss_pred -cccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 012869 166 -LPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGS 220 (454)
Q Consensus 166 -ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~~~~~~P~~~ 220 (454)
.+...+.++.......+.+.++ +...|....++..+.+.++...+..-|.|.
T Consensus 125 ~~~r~~~~lif~~~~~~l~~~~~---~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~ 177 (415)
T COG0814 125 PLPRKLGSLIFALVLAFLSWLGT---LAVLKITSLLVFGKVIYLVLLVVYLIPHWN 177 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3444444443332233334444 788888888888887777777666667664
No 42
>PRK11021 putative transporter; Provisional
Probab=95.31 E-value=0.36 Score=50.33 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
++..+..+.+-|++.|+-. +| +.-.-.++.+|+...+
T Consensus 43 ~~~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf 79 (410)
T PRK11021 43 LLIFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGR 79 (410)
T ss_pred HHHHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHH
Confidence 3445566667777777764 34 5667778888876544
No 43
>PRK11387 S-methylmethionine transporter; Provisional
Probab=95.26 E-value=0.3 Score=51.94 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=32.8
Q ss_pred ecCCCCCcccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 70 FLDPGNLEGDLQS-GAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 70 ~idpG~i~t~~~a-GA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
+..||......-. |.-++|-+.- ++..+..+.+-|++.++=.. | +.-+-.++.+|+...+
T Consensus 35 f~~~g~~~~~~G~~~~~l~~~i~~--~~~~~~~~~~aELas~~P~a-G-G~y~y~~~~~g~~~gf 95 (471)
T PRK11387 35 FFNTGYIISTTGAAGTLLAYLIGA--LVVYLVMQCLGELSVAMPET-G-AFHVYAARYLGPATGY 95 (471)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCC-C-CHHHHHHHhcChHHHH
Confidence 4566665543221 2223332222 34444556668888888653 4 4666778888886554
No 44
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.12 E-value=0.32 Score=51.07 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=34.0
Q ss_pred hhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhhhhcccch
Q 012869 321 QYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLN 366 (454)
Q Consensus 321 ~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~i~~~~l~ 366 (454)
++++..+|+ |..++.+++++.-+|||.+...|-++...+-..+
T Consensus 341 ~A~~~~~g~---~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~ 383 (452)
T COG1115 341 AAFSSHLGS---WGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFG 383 (452)
T ss_pred HHHHHhcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678999998 8999999999999999988776655555443333
No 45
>PRK10484 putative transporter; Provisional
Probab=95.11 E-value=0.18 Score=54.49 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=37.8
Q ss_pred eeecCCCCCcccccccchhhhHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVG-LLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~-~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
++.+..++.......+.++|+..+|......+.. +..--...|+--.-=.+..|.+++||++..+.
T Consensus 51 AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~ 117 (523)
T PRK10484 51 LTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRR 117 (523)
T ss_pred HHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHH
Confidence 4467777888887778888877653222221111 11111233433222247899999999976554
No 46
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=95.08 E-value=0.2 Score=53.00 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
++..+..+.+-|++.|+-.. | +..+..++.+|++..+.
T Consensus 56 v~~~~~a~~~aEl~s~~P~~-G-g~~~~~~~~~g~~~gf~ 93 (452)
T TIGR01773 56 LLVVFIMRMLGEMAVANPDT-G-SFSTYADDAIGRWAGFT 93 (452)
T ss_pred HHHHHHHHHHHHHHHhcCCC-C-CHHHHHHHHhCcHHHHH
Confidence 45556778888888887653 3 56777888899876554
No 47
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.82 E-value=0.33 Score=50.42 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=25.6
Q ss_pred hhhhHHHHhCCCcchHHHHHHHhHhhccccceeee
Q 012869 319 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITG 353 (454)
Q Consensus 319 a~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~ 353 (454)
+.+.-+..+|+ ++..+.++..+-|.+++.+.-
T Consensus 257 l~~~a~~~~G~---~G~~ll~i~v~lACLtT~iGl 288 (378)
T TIGR00796 257 LSAYSQHLFGS---LGSFLLGLIITLACLTTAVGL 288 (378)
T ss_pred HHHHHHHHcch---hHHHHHHHHHHHHHHHHHHHH
Confidence 34566889998 889999999999988886543
No 48
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=94.62 E-value=1.1 Score=48.01 Aligned_cols=46 Identities=13% Similarity=0.321 Sum_probs=28.3
Q ss_pred hhH-HHHHH--HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 87 GYS-LLWLL--LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 87 Gy~-LLW~l--lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
|.. ..|++ +.+.+..+.+-|++.++=. +| +.-+-.++.+|++..+.
T Consensus 77 g~~~~~~ii~~i~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 77 GLALIMWAVCGIFSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 554 34543 3445566777777777653 33 56667778888866553
No 49
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=94.41 E-value=0.95 Score=48.11 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
+...+..+.+.|++.|+--.+| +..+-.|+.+|++..+.
T Consensus 46 ~~~~~~al~~aeL~s~~P~~gG-G~y~y~~~~fG~~~gf~ 84 (468)
T TIGR03810 46 VGMLALAFSFQNLANKKPELDG-GVYSYAKAGFGPFMGFI 84 (468)
T ss_pred HHHHHHHHHHHHHHhhCCCCCC-ChhhhHHhHcCcHHHHH
Confidence 4556677888888888766554 67778888899866543
No 50
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=94.10 E-value=3.8 Score=43.55 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=34.2
Q ss_pred ecCCCCCcccccccchhhhHHHHH--HHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 70 FLDPGNLEGDLQSGAIAGYSLLWL--LLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 70 ~idpG~i~t~~~aGA~~Gy~LLW~--llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
+..+|...+. +|. .+.-+.|+ -++.....+.+-|++.++=...| +..+..++.+|+...+.
T Consensus 23 f~~~~~~~~~--~Gp-~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG-~~~~~~~~~~g~~~gf~ 85 (478)
T TIGR00913 23 LVGSGTALAT--GGP-AGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG-SFATYASRFVDPAFGFA 85 (478)
T ss_pred hhcchhHHHh--cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHcCcHHHHH
Confidence 4566666543 442 12222222 24445666677888887764343 45667777788765543
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=94.03 E-value=1.4 Score=47.41 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=30.4
Q ss_pred chhhhHHHHHHHHH-----HHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 84 AIAGYSLLWLLLWA-----TAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 84 A~~Gy~LLW~llla-----~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
|++|++++...+++ .+....+.|++.+..-.+| +..+-.|+-+|+++.+
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf 82 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGF 82 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHH
Confidence 57788886544444 3346666777766542234 6777778888875544
No 52
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=93.98 E-value=1 Score=47.89 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 012869 95 LWATAVGLLVQLLSARLGVA 114 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~v 114 (454)
++..+.+..+-|++.++=..
T Consensus 58 i~~l~~~~~~aEl~s~~P~~ 77 (482)
T TIGR00907 58 AGSICIALSLAELSSAYPTS 77 (482)
T ss_pred HHHHHHHHHHHHHHhhCCCC
Confidence 45555677778888887653
No 53
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=93.39 E-value=1.2 Score=47.12 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=82.8
Q ss_pred cCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhHHHhhhcCCchHH----HHHHHHHHHHHh
Q 012869 71 LDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWAR----MVLWVMAELALI 144 (454)
Q Consensus 71 idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~v--TG~~l~e~~r~~~g~~~~----~~l~~~~~l~~i 144 (454)
+|.|=-..+.++=+..|-+.+-+-+++-++.+++.+.-+.+-.. +-.+..+-.+|.+|+|+. |..|.+- +
T Consensus 29 IGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w----v 104 (462)
T COG1113 29 IGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW----V 104 (462)
T ss_pred hhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH----H
Confidence 44444444555556678888888888889999999888888887 244889999999998875 3345542 2
Q ss_pred cccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 012869 145 GSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVL 200 (454)
Q Consensus 145 ~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~l 200 (454)
.+.++|..+.+.=++.-+++ +|.|+.+++..+....+=+..-..|..+|..+..+
T Consensus 105 ~v~~ae~tAi~~y~~~WfP~-vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 105 LVGIAELTAIGIYLQFWFPD-VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456776777777888886 79999887766543332222212236777665543
No 54
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=93.32 E-value=0.45 Score=49.48 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=22.6
Q ss_pred hhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchh
Q 012869 321 QYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 358 (454)
Q Consensus 321 ~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~ 358 (454)
...+...|+ +...++.+++..+.+++..+...+..
T Consensus 262 ~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~s 296 (426)
T PF13520_consen 262 VLASAVGGS---WLAIIVSIAAILSLFGSINAFIFGAS 296 (426)
T ss_dssp HHHHHHHCC---THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccc---ccccccccccccccccccchhhcchh
Confidence 344555556 77788888888877777665554433
No 55
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=93.00 E-value=2.5 Score=44.38 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 96 la~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
...+..+.+-|++.|+-.. | +...-.++.+||+..+.
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~ 88 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFL 88 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHH
Confidence 4456677899999998763 3 45667788899866553
No 56
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.33 E-value=2.7 Score=44.34 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=43.6
Q ss_pred eecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHHHhhhcCCchHHHHHHHH
Q 012869 69 AFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVLWVM 138 (454)
Q Consensus 69 a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~v-TG~~l~e~~r~~~g~~~~~~l~~~ 138 (454)
-+.|+||++-=..-|.+.|-+..|..+--.+-+..+=.++ .+.+. +|.+..+.- ++-||+....+...
T Consensus 15 mFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~~l~-~~v~~~f~~if~~~ 83 (427)
T PF05525_consen 15 MFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIEDLA-SRVGPKFALIFTIL 83 (427)
T ss_pred HHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHh-cccCcHHHHHHHHH
Confidence 4689999999988888888887777655555444444333 44444 444554444 45688776655443
No 57
>TIGR00930 2a30 K-Cl cotransporter.
Probab=92.16 E-value=1.9 Score=50.16 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHhHhhccccceeeeccchhhhh
Q 012869 334 ILYIWGIGLLAAGQSSTITGTYAGQFIM 361 (454)
Q Consensus 334 a~~lF~igllaag~sS~it~~~ag~~i~ 361 (454)
...++.+|.+.+.++|..+..++...+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl 413 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLF 413 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888776665544443
No 58
>PRK10746 putative transport protein YifK; Provisional
Probab=91.98 E-value=2 Score=45.70 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
++..+++..+-|++.++=. +| +..+-.++.+|++..+
T Consensus 54 ~~~~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf 90 (461)
T PRK10746 54 LFVFFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGY 90 (461)
T ss_pred HHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHH
Confidence 3334456667788877753 44 5667777777875543
No 59
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=91.94 E-value=3.6 Score=44.35 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=76.4
Q ss_pred cCCCceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcC-----CchHHHH
Q 012869 60 TGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEY-----PSWARMV 134 (454)
Q Consensus 60 lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~-----g~~~~~~ 134 (454)
+|.|+.++.+. .+.++=-+|+--+|.+.-.++.. ++.-.=||+..+= ++|- .+.+..|| |--..|.
T Consensus 60 IGTGLfvgsG~----~l~~aGP~g~li~y~i~G~~vy~--vm~sLGEma~~~P-~sGs--F~~ya~rfvdpa~GFa~gWn 130 (541)
T COG0833 60 IGTGLFVGSGK----ALSQAGPAGLLIAYLIIGIMVYF--VMQSLGELAVFYP-VSGS--FSTYATRFVDPAFGFALGWN 130 (541)
T ss_pred cccceeeecch----hhhccCcHHHHHHHHHHHHHHHH--HHHHHHHHHhhcC-CCCc--hhhhhhhhcCchHHHHHHHH
Confidence 89999887653 11122235666677766655543 3455678888888 6772 22222233 2222343
Q ss_pred HHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHh
Q 012869 135 LWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWM 211 (454)
Q Consensus 135 l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f~~~ 211 (454)
.|+. -+. +.-.|+..+++-++.-++..+|.++++.+..+..+++=+++-.+|--.|-.+..+=.++.+.|++.
T Consensus 131 Yw~~-w~v---~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~ 203 (541)
T COG0833 131 YWLN-WAV---TLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIIL 203 (541)
T ss_pred HHHH-HHH---HhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHH
Confidence 3332 111 123467777777887775446888887776654443333433345677766655444444555543
No 60
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=91.68 E-value=0.4 Score=51.05 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=24.5
Q ss_pred hhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhhh
Q 012869 321 QYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI 360 (454)
Q Consensus 321 ~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~i 360 (454)
...+...++ +...++.++.+.+.+++.....+++...
T Consensus 278 ~~~~~~~~~---~~~~i~~~~~l~s~~s~~~~~~~~~sR~ 314 (478)
T PF00324_consen 278 IAAQYSGGP---WLAWIVNAGILISAFSSANASLYAASRL 314 (478)
T ss_pred hhhhhcccc---cccceecccchhhhhhhhhhhhccccee
Confidence 334444444 5667888888888888877766654443
No 61
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=91.67 E-value=4.4 Score=42.82 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 96 la~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
+..+.++.+-|++.++=. +| +..+-.+|.+|++..+.
T Consensus 37 ~~~~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~ 73 (446)
T PRK10197 37 LVVMIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYT 73 (446)
T ss_pred HHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHH
Confidence 344456666667666543 34 67778888899866543
No 62
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=91.54 E-value=3.2 Score=44.16 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=30.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 82 SGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 82 aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
+|...=|..+...+...+..+.+-|++.|+=. +| +.-+-.++-+|+...+
T Consensus 45 ~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf 94 (475)
T TIGR03428 45 GGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGW 94 (475)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccH
Confidence 34432333444455666677788888888764 34 5555667777775544
No 63
>TIGR00909 2A0306 amino acid transporter.
Probab=90.90 E-value=3.1 Score=43.45 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 96 la~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
...+....+.|++.|+-. +| +.-+-.++.+||+..+.
T Consensus 48 ~~~~~a~~~~el~~~~p~-~G-g~y~~~~~~~G~~~g~~ 84 (429)
T TIGR00909 48 TALFIALVYAELAAMLPV-AG-SPYTYAYEAMGELTAFI 84 (429)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-cceeeHHHHhCcHHHHH
Confidence 444567778888887765 33 55667777888876543
No 64
>PRK10655 potE putrescine transporter; Provisional
Probab=90.53 E-value=4.5 Score=42.42 Aligned_cols=36 Identities=6% Similarity=-0.015 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 96 la~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
++.+..+.+-|++.|+=. +| +..+-.++.+||+..+
T Consensus 50 ~~~~~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf 85 (438)
T PRK10655 50 GSMALAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNF 85 (438)
T ss_pred HHHHHHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHH
Confidence 334456677777766543 33 4566778888886544
No 65
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=89.96 E-value=3.7 Score=43.21 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=30.8
Q ss_pred ccchhhhHHHHHH--HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 82 SGAIAGYSLLWLL--LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 82 aGA~~Gy~LLW~l--lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
+|.....-+.|++ ++..+..+.+-|++.++=.. | +.-.-.++.+|+...+
T Consensus 39 ~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf 90 (445)
T PRK11357 39 AGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAF 90 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHH
Confidence 4433333444544 55667888888998887653 3 3444567778876544
No 66
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=89.67 E-value=4.2 Score=42.80 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
+.+.+..+.+-|++.++=. +| +.-+-.|+.|||+..+
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf 87 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGY 87 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHH
Confidence 4566677888888888754 34 6666788889987654
No 67
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=89.32 E-value=2.8 Score=43.15 Aligned_cols=63 Identities=17% Similarity=0.361 Sum_probs=45.9
Q ss_pred CCCCCcccccccchhhhH--HHHHHHHHHHHHHHHHHHHHHhhhc--cchhhHHHhhhcCCchHHHHHH
Q 012869 72 DPGNLEGDLQSGAIAGYS--LLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMVLW 136 (454)
Q Consensus 72 dpG~i~t~~~aGA~~Gy~--LLW~llla~~~~~~~Q~~~aRlg~v--TG~~l~e~~r~~~g~~~~~~l~ 136 (454)
|+|-++.-..+ +.|||- ++|+++ .+++.-.+|++.+=...+ -||++.|.++|+.||..+.++.
T Consensus 67 GaGPI~GPi~a-a~~GwlPa~lWI~~-G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~ 133 (376)
T PF02554_consen 67 GAGPIVGPILA-AQFGWLPALLWIVF-GCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFL 133 (376)
T ss_pred ccccchHHHHH-HHhcchHHHHHHHH-ccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 33444555555 999996 778665 556666778877766666 7899999999999998776543
No 68
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=89.22 E-value=8.6 Score=40.42 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
+.+.+..+.+.|++.|+=. +| +..+-.|| +|+...+
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf 83 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGF 83 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHH
Confidence 4566778888999998875 44 56666666 7765443
No 69
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=88.68 E-value=5.4 Score=42.33 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.0
Q ss_pred HhhhceeeEEeccchhhh
Q 012869 237 QQAVGVVGCIIMPHNVFL 254 (454)
Q Consensus 237 ~~~vaiiG~ti~P~~~f~ 254 (454)
+.++|++.-...-|+.+.
T Consensus 231 f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLP 248 (437)
T ss_pred hhhhhheeeeecCCeeee
Confidence 688999998888888874
No 70
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=88.62 E-value=13 Score=39.39 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=29.1
Q ss_pred ccchhhhHHHHHHHHHH-----HHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 82 SGAIAGYSLLWLLLWAT-----AVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 82 aGA~~Gy~LLW~llla~-----~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
+.|.+|.+.+...+++. +..+.+-|++.++=. +| +..+-.||.+|+....
T Consensus 24 ~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 24 AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGF 78 (474)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHH
Confidence 44567776653333333 345566677766543 23 5667788888875543
No 71
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=88.21 E-value=5.2 Score=43.22 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=18.5
Q ss_pred eeeeEEeEcchhHHHHHHHHHHhhC
Q 012869 430 HIMGTFKIGPILKVCLIIALFYILL 454 (454)
Q Consensus 430 ~img~~~~~~~~~~l~~i~~~~l~~ 454 (454)
=..|++.-+++.+...++++++++|
T Consensus 446 f~~gp~~lGk~s~p~~~i~v~w~lf 470 (550)
T KOG1289|consen 446 FRPGPFNLGKFSKPIGIIAVLWVLF 470 (550)
T ss_pred cCCCCccccccccchHHHHHHHHHH
Confidence 3457788888888888888777653
No 72
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=87.67 E-value=9.6 Score=38.23 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cchhhHHHhhhcCCchHHHHH
Q 012869 93 LLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVL 135 (454)
Q Consensus 93 ~llla~~~~~~~Q~~~aRlg~v-TG~~l~e~~r~~~g~~~~~~l 135 (454)
..+++.+.....-.+..|+..- .|+++.|..++.+|||....+
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii 80 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKII 80 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHH
Confidence 4566777777777777777765 899999999999999887653
No 73
>PRK10836 lysine transporter; Provisional
Probab=87.39 E-value=8.2 Score=41.26 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=24.7
Q ss_pred ecCCCCCcccccccchhhhHHHHHH--HHHHHHHHHHHHHHHHhhhccc
Q 012869 70 FLDPGNLEGDLQSGAIAGYSLLWLL--LWATAVGLLVQLLSARLGVATG 116 (454)
Q Consensus 70 ~idpG~i~t~~~aGA~~Gy~LLW~l--lla~~~~~~~Q~~~aRlg~vTG 116 (454)
+..||..... +|. .+.-+.|.+ ++..+.+..+-|++.|+=..-|
T Consensus 36 f~~~g~~~~~--aGp-~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg 81 (489)
T PRK10836 36 FVASGATISQ--AGP-GGALLSYMLIGLMVYFLMTSLGELAAYMPVSGS 81 (489)
T ss_pred hHhhhHHHHh--cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 4566665553 443 222233332 4555677778889988876333
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=87.14 E-value=16 Score=39.13 Aligned_cols=138 Identities=19% Similarity=0.242 Sum_probs=78.2
Q ss_pred CCCCCcccccccchhhhHH-----HHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHH-HHHHHHHHHHHhc
Q 012869 72 DPGNLEGDLQSGAIAGYSL-----LWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWAR-MVLWVMAELALIG 145 (454)
Q Consensus 72 dpG~i~t~~~aGA~~Gy~L-----LW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~-~~l~~~~~l~~i~ 145 (454)
|.-|+-++..++.-+-..| +-.+++++++.+.+..+.+|-|..+|-+-...+|..||-+.. +....=+..++.-
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~W 132 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVW 132 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4455556666665554333 335677778888888999999999999999999999986543 3323333444544
Q ss_pred ccHHHHHhHHHHHHHHh----cC-----ccccchhh----hhhhh----hhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 012869 146 SDIQEVIGSAIAIKILS----NG-----ILPLWSGV----VITAL----DCFIFLFLENYGVRKLEAVFAVLIATMALSF 208 (454)
Q Consensus 146 ~~i~e~iG~aial~ll~----gg-----~ip~~~~v----~i~~~----~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~f 208 (454)
..++..+|. .+++++. |. ..+...+. +++.+ ....+++.+-+..|++|..-..++-++.+.+
T Consensus 133 yGvqty~Gg-~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl 211 (497)
T COG1953 133 YGVQTYAGG-LAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGL 211 (497)
T ss_pred HHHHHHHhH-HHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHH
Confidence 555555553 2344432 21 00111111 11111 1112223333456888888777766666665
Q ss_pred HH
Q 012869 209 AW 210 (454)
Q Consensus 209 ~~ 210 (454)
++
T Consensus 212 ~I 213 (497)
T COG1953 212 AI 213 (497)
T ss_pred HH
Confidence 54
No 75
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=86.42 E-value=18 Score=38.01 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=46.2
Q ss_pred eeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHH
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWV 137 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~ 137 (454)
+-+.|+||++-=...|-+.|....|..+--.+-+.-+=-+..=-....|++..+.-+ +.|||...++-.
T Consensus 16 alFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~~-~i~~~fg~~f~~ 84 (431)
T COG1114 16 ALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLAT-RIGPWFGVLFAI 84 (431)
T ss_pred HHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHhh-hccchHHHHHHH
Confidence 447899999999999999999987776544443333333333334557777766654 468888765433
No 76
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=86.30 E-value=22 Score=36.06 Aligned_cols=101 Identities=10% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHH-HH--HHH---HhcccHHHHHhHHHHHHHHhcCcccc
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWV-MA--ELA---LIGSDIQEVIGSAIAIKILSNGILPL 168 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~-~~--~l~---~i~~~i~e~iG~aial~ll~gg~ip~ 168 (454)
+++.+..+.+-+++.|. -|+++.|..++.+|||..+.+.. .. .+. ....+.+|++- ..+.+. .|.
T Consensus 45 ~~~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~-tp~ 115 (359)
T TIGR00912 45 LIIIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK-----TYLLPR-TPI 115 (359)
T ss_pred HHHHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCC-CCH
Confidence 33344455555555554 46789999999999987765321 11 111 11111222211 112232 566
Q ss_pred chhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q 012869 169 WSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 207 (454)
Q Consensus 169 ~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l~ 207 (454)
+...++..+ +.....+.|.+.+.|+..++..++.+.
T Consensus 116 ~~~~l~~l~---~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 116 IVIIILIII---VSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHH---HHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 654333322 122233446777777777666555554
No 77
>PRK10580 proY putative proline-specific permease; Provisional
Probab=85.86 E-value=11 Score=39.96 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHH
Q 012869 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 95 lla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
+...+..+.+-|++.|+-.. | +..+-.++.+||...+.
T Consensus 53 i~~~~~a~~~aEl~s~~P~~-G-g~y~y~~~~~G~~~gf~ 90 (457)
T PRK10580 53 VAAYIIMRALGEMSVHNPAA-S-SFSRYAQENLGPLAGYI 90 (457)
T ss_pred HHHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHcCcHHHHH
Confidence 34445667778888876653 3 55556788889866554
No 78
>PRK15015 carbon starvation protein A; Provisional
Probab=85.21 E-value=3 Score=45.95 Aligned_cols=53 Identities=30% Similarity=0.434 Sum_probs=41.0
Q ss_pred ccchhhh--HHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhHHHhhhcCCchHHHHH
Q 012869 82 SGAIAGY--SLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMVL 135 (454)
Q Consensus 82 aGA~~Gy--~LLW~llla~~~~~~~Q~~~aRlg~v--TG~~l~e~~r~~~g~~~~~~l 135 (454)
..++||| .++|+++ .+++.-.+|.+.+-...+ -||++.|.+||+.|+..+..+
T Consensus 107 lAa~~GwlP~~LWIl~-G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 107 LAAQMGYLPGMIWLLA-GVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred HHHHHcchHHHHHHHH-cceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 3458999 4888765 456666789988877766 789999999999998877653
No 79
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=77.60 E-value=20 Score=38.09 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=44.8
Q ss_pred ceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHH
Q 012869 64 FLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVM 138 (454)
Q Consensus 64 ~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~ 138 (454)
+..=+-+.|+||++-=..-|.+.|-+..+.++--++-+..+=.++.=-...+|.+..+.- +|.||+....+...
T Consensus 15 ~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~-~rv~~~f~~~f~~~ 88 (439)
T PRK15433 15 FMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLS-TPIGKVAGVLLATV 88 (439)
T ss_pred HHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-hhcchHHHHHHHHH
Confidence 333356899999999888888888877776655544444444443333333553454444 45688776654443
No 80
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=73.97 E-value=1.3e+02 Score=32.13 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHhhccccchhhhhh-hhhccceeeeEEeEcchhHHHH
Q 012869 400 LDVLNEWLNVLQSVQIPFALIPLL-YLVSQEHIMGTFKIGPILKVCL 445 (454)
Q Consensus 400 l~~l~~~~~v~~~~~lP~~~~~ll-~l~n~k~img~~~~~~~~~~l~ 445 (454)
+..++-...+..+..+-++.=|++ +.++.++--|.++-.++.|++.
T Consensus 384 L~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l 430 (449)
T KOG1304|consen 384 LALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVL 430 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHH
Confidence 334443344443333333333443 2222332227888888888543
No 81
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=72.90 E-value=28 Score=36.27 Aligned_cols=34 Identities=18% Similarity=-0.183 Sum_probs=21.7
Q ss_pred hhhHHHHhCCCcchHHHHHHHhHhhccccceeeeccc
Q 012869 320 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYA 356 (454)
Q Consensus 320 ~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~a 356 (454)
.+......|. +...+..++.+.+.+++..+...+
T Consensus 275 ~~~~~~~~g~---~~~~~i~~~~~~~~~~~~~~~~~~ 308 (466)
T COG0531 275 ALAALFGGGN---WGAIIIAILALLSLFGSLLAWILA 308 (466)
T ss_pred HHHHHHcCcc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 667778888877777776555444
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=72.36 E-value=16 Score=39.54 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=41.8
Q ss_pred ccccchhhh--HHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhHHHhhhcCCchHHHHH
Q 012869 80 LQSGAIAGY--SLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMVL 135 (454)
Q Consensus 80 ~~aGA~~Gy--~LLW~llla~~~~~~~Q~~~aRlg~v--TG~~l~e~~r~~~g~~~~~~l 135 (454)
...+|+||| .++|++ +.+++.-.+|++.+-.-.+ -||++.|..+|+.|+..+.+.
T Consensus 74 PvlAAq~G~Lp~~LWIl-~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~ 132 (575)
T COG1966 74 PALAAQYGWLPAFLWIL-LGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFF 132 (575)
T ss_pred HHHHHHhcCcHHHHHHH-HhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHH
Confidence 356899996 688865 4567777788776655444 689999999999999887653
No 83
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=71.90 E-value=55 Score=35.79 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=19.3
Q ss_pred hHHHHHHHhHhhccccceeeeccchhh
Q 012869 333 PILYIWGIGLLAAGQSSTITGTYAGQF 359 (454)
Q Consensus 333 ~a~~lF~igllaag~sS~it~~~ag~~ 359 (454)
|+..++.+|.+.+.+++..+..++...
T Consensus 312 ~~~~ii~~~~~~~~~~sl~~~~~~~sR 338 (557)
T TIGR00906 312 PAKYIVAVGALCGMSTSLLGGMFPLPR 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888887776666555443
No 84
>PRK03557 zinc transporter ZitB; Provisional
Probab=49.04 E-value=90 Score=31.41 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHHHH
Q 012869 188 YGVRKLEAVFAVLIATM 204 (454)
Q Consensus 188 yg~~~lE~~~~~lv~~m 204 (454)
|||.|+|.+...+.+++
T Consensus 81 yG~~r~E~l~al~~~~~ 97 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIA 97 (312)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89999999987766654
No 85
>PLN03074 auxin influx permease; Provisional
Probab=43.52 E-value=2.8e+02 Score=29.72 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=9.0
Q ss_pred HHHhhhcCCchHHHHH
Q 012869 120 AELCREEYPSWARMVL 135 (454)
Q Consensus 120 ~e~~r~~~g~~~~~~l 135 (454)
.|..+..+||+++...
T Consensus 123 ~e~~~~~~G~~~~~~~ 138 (473)
T PLN03074 123 FEVLDGLLGPYWKNVG 138 (473)
T ss_pred HHHHHHhcChhHHHHH
Confidence 4444445788665543
No 86
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=43.42 E-value=1.6e+02 Score=31.42 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHH
Q 012869 89 SLLWLLLWAT----AVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (454)
Q Consensus 89 ~LLW~llla~----~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~ 133 (454)
..+|.++.+. +....+-|++.++=-.+| +.-.-.|+-+|+...+
T Consensus 39 ~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf 86 (496)
T PRK15238 39 AIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAF 86 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHH
Confidence 4455444443 344566777776543334 6777788888875554
No 87
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=39.71 E-value=3.1e+02 Score=30.14 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred hhhHHHHhCCCcchHHH---HHHHhHhhccccceeeeccchhhhh
Q 012869 320 GQYLQEKYGGGLFPILY---IWGIGLLAAGQSSTITGTYAGQFIM 361 (454)
Q Consensus 320 ~~~L~~~~G~~~~~a~~---lF~igllaag~sS~it~~~ag~~i~ 361 (454)
.+...-..|.. ++++ ++.++++.+..|+...+.+++...+
T Consensus 305 ~spF~iai~~~--~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l 347 (554)
T KOG1286|consen 305 ASPFVIAIGNA--GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVL 347 (554)
T ss_pred ccHHHHHHhcc--CccccchhhhHHHHHHHHHHHHHHhHHhHHHH
Confidence 34555344443 6778 9999999999999888888766654
No 88
>PRK09928 choline transport protein BetT; Provisional
Probab=39.65 E-value=1.8e+02 Score=32.74 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=37.5
Q ss_pred HHHHHhHhhccccceeeeccchhhhhcccch------hhHHHHHHHHHhhccccccceeeEEEecCCcchHHhHHHHHHH
Q 012869 336 YIWGIGLLAAGQSSTITGTYAGQFIMGGFLN------LRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNV 409 (454)
Q Consensus 336 ~lF~igllaag~sS~it~~~ag~~i~~~~l~------~~~~~~~~~~~~~~~~~~pa~~v~~~~g~~~~~l~~l~~~~~v 409 (454)
.+..+..+...+...+|.++++.+++..+-. .++++|.|-.....+..++..+ +..|. +.. ++.+.+
T Consensus 409 ~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~L--L~~GG----L~a-LQt~si 481 (679)
T PRK09928 409 TFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGM--LMTNG----ISA-LQNTTV 481 (679)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHH--HHhcC----HHH-HHHHHH
Confidence 3444444444455566677777777654422 2345665543332323332221 12232 222 233333
Q ss_pred Hhhccccchhhhhh
Q 012869 410 LQSVQIPFALIPLL 423 (454)
Q Consensus 410 ~~~~~lP~~~~~ll 423 (454)
+ ..+||..+.++
T Consensus 482 i--~alPf~~I~ll 493 (679)
T PRK09928 482 I--MGLPFSFVIFF 493 (679)
T ss_pred H--HHHHHHHHHHH
Confidence 3 46788777665
No 89
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=39.37 E-value=49 Score=23.85 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCch
Q 012869 91 LWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSW 130 (454)
Q Consensus 91 LW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~ 130 (454)
+..+.+.+..-|..+. |.+.-.|++|.|+++++|.+|
T Consensus 10 ~~av~iG~~ayyl~e~---R~~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 10 LFAVFIGTSAYYLYEN---REGRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred HHHHHHHHHHHHHHHH---hccCCCCCcHHHHHHHHhhcc
Confidence 4555555555555554 999999999999999998765
No 90
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=35.45 E-value=59 Score=35.79 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=58.1
Q ss_pred eeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH----HHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHHH
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQL----LSARLGVATGRHLAELCREEYPSWARMVLWVMAELAL 143 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~----~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~~ 143 (454)
+++++..++..-...|++||.+..|.-+-........-. .--|.++. +.-|-.+.||++..++. +.+..+..
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~l-~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRYL-ATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchhh-HHHHHHHH
Confidence 567888899999999999999977765444332222111 11233332 46677888888765543 22222221
Q ss_pred hcccHHHH-HhHHHHHHHHhcCccccchhhhhhhhhh
Q 012869 144 IGSDIQEV-IGSAIAIKILSNGILPLWSGVVITALDC 179 (454)
Q Consensus 144 i~~~i~e~-iG~aial~ll~gg~ip~~~~v~i~~~~~ 179 (454)
+..-+... ---+++++..+| +..+....+....|
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg--~~~~l~~~~~~~ic 168 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTG--INLYLIVVILGLIC 168 (585)
T ss_pred HHhheeeeEeehHHHHHHHhc--cCceeehHHHHHHH
Confidence 21111111 112567777777 66665444444333
No 91
>PRK09950 putative transporter; Provisional
Probab=33.92 E-value=1.4e+02 Score=32.40 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHhHhhccccceeeeccchhhhhcccc------hhhHHHHHHHHHhhccccccceeeEEEecCCcchHHhHHHHHH
Q 012869 335 LYIWGIGLLAAGQSSTITGTYAGQFIMGGFL------NLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLN 408 (454)
Q Consensus 335 ~~lF~igllaag~sS~it~~~ag~~i~~~~l------~~~~~~~~~~~~~~~~~~~pa~~v~~~~g~~~~~l~~l~~~~~ 408 (454)
..+..+..+...+...+|..+++.+++..+. +.+++++.|-.....+..++..++ ..|.. +..+ +.+.
T Consensus 401 ~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll--~~gG~---l~~l-Q~~~ 474 (506)
T PRK09950 401 GKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSIL--FTGAS---LDTM-KTTV 474 (506)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHH--HhCCc---HHHH-HHHH
Confidence 3344444444445555666666666654432 123455555433323333332222 23321 2222 3232
Q ss_pred HHhhccccchhhhhhhh
Q 012869 409 VLQSVQIPFALIPLLYL 425 (454)
Q Consensus 409 v~~~~~lP~~~~~ll~l 425 (454)
++ ..+|+..+.++..
T Consensus 475 ii--~alP~~~i~~l~~ 489 (506)
T PRK09950 475 VL--TALPFLVILLIKV 489 (506)
T ss_pred HH--HHHHHHHHHHHHH
Confidence 33 4678877766533
No 92
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=33.73 E-value=1.3e+02 Score=27.73 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=5.7
Q ss_pred HHHHHhcCcc
Q 012869 157 AIKILSNGIL 166 (454)
Q Consensus 157 al~ll~gg~i 166 (454)
++.++|||++
T Consensus 116 ~fa~lfgg~~ 125 (193)
T PF06738_consen 116 AFALLFGGSW 125 (193)
T ss_pred HHHHHHCCCH
Confidence 4555677653
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=29.54 E-value=3.8e+02 Score=28.57 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=38.4
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhh
Q 012869 119 LAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDC 179 (454)
Q Consensus 119 l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~ 179 (454)
+.+..++.+|++..+++.+...+++..+.++...+.+-=++-+++ ++...++.+..+.+
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--isY~~~v~i~~l~S 325 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--LSYRTLVFILGGFS 325 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHH
Confidence 334467778998888777777778888878877676655555554 55555555544433
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=27.94 E-value=6e+02 Score=27.00 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=38.5
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhh
Q 012869 119 LAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDC 179 (454)
Q Consensus 119 l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~ 179 (454)
|.+..++.+|+....++.+...+++..|.++-...++-=++-+++ .++-..++.++.+..
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kisY~~~v~i~~i~S 322 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-KISYKVWVIIFTIFS 322 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHHHHHHHHHHH
Confidence 444455667888777776766777777777755555555666666 466666666555443
No 95
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=24.31 E-value=63 Score=32.19 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=14.1
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 012869 187 NYGVRKLEAVFAVLIATMA 205 (454)
Q Consensus 187 ~yg~~~lE~~~~~lv~~m~ 205 (454)
.|||.++|.+...+.+++.
T Consensus 72 pyG~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 72 TFGHGKAESLAALAQSMFI 90 (299)
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 3789999999877665543
No 96
>PTZ00206 amino acid transporter; Provisional
Probab=22.26 E-value=5.7e+02 Score=27.19 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=19.1
Q ss_pred HHHHHhhhccch-hhHHHhhhcCCchHHHHH
Q 012869 106 LLSARLGVATGR-HLAELCREEYPSWARMVL 135 (454)
Q Consensus 106 ~~~aRlg~vTG~-~l~e~~r~~~g~~~~~~l 135 (454)
.+..|..-.++. +..|..++-+|||.+++.
T Consensus 109 ~lL~~~~~~~~~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 109 YALGVAADKTNIRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHhccCCCCCHHHHHHHHhCHHHHHHH
Confidence 334444444443 677777777899887764
No 97
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=21.34 E-value=1.2e+02 Score=29.40 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.7
Q ss_pred cchhhHHHHHHHHHHHH
Q 012869 188 YGVRKLEAVFAVLIATM 204 (454)
Q Consensus 188 yg~~~lE~~~~~lv~~m 204 (454)
||+.++|.+...+.+++
T Consensus 52 yG~~r~E~l~~l~~~~~ 68 (268)
T TIGR01297 52 FGHGRAEILAALLNGLF 68 (268)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89999999987766654
Done!