Query 012869
Match_columns 454
No_of_seqs 198 out of 1266
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 98.1 5.2E-05 1.8E-09 79.9 15.3 107 89-200 60-171 (501)
2 3l1l_A Arginine/agmatine antip 96.6 0.012 4.2E-07 59.7 11.9 39 318-359 261-299 (445)
3 3dh4_A Sodium/glucose cotransp 96.1 0.00046 1.6E-08 73.1 -2.2 110 67-181 32-146 (530)
4 2xq2_A Sodium/glucose cotransp 96.1 0.0071 2.4E-07 64.8 7.0 113 68-185 62-179 (593)
5 3gia_A Uncharacterized protein 96.0 0.014 4.8E-07 59.3 8.4 38 319-359 260-297 (444)
6 4djk_A Probable glutamate/gamm 91.0 0.6 2E-05 48.0 8.8 32 100-134 57-90 (511)
7 4f4c_A Multidrug resistance pr 7.3 2.5E+02 0.0086 32.5 3.7 13 48-60 57-69 (1321)
8 3j1z_P YIIP, cation efflux fam 7.1 94 0.0032 29.6 -0.1 18 187-204 74-91 (306)
9 2wsw_A BCCT family betaine/car 5.3 1.6E+03 0.054 22.9 8.1 14 188-201 258-271 (509)
10 2ljw_A ALR2454 protein; novel 4.6 2E+02 0.0068 23.4 0.4 15 115-129 2-16 (110)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.06 E-value=5.2e-05 Score=79.91 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHH----hcC
Q 012869 89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKIL----SNG 164 (454)
Q Consensus 89 ~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll----~gg 164 (454)
+.++.+++++++...+--..++.|..+|.+..+..|..||++...+.-++..+..++-..-+....+.+++.+ +|
T Consensus 60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g- 138 (501)
T 2jln_A 60 QVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG- 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4456778888888888888999999999999999999999877654332222222222222333333344443 35
Q ss_pred ccc-cchhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 012869 165 ILP-LWSGVVITALDCFIFLFLENYGVRKLEAVFAVL 200 (454)
Q Consensus 165 ~ip-~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~l 200 (454)
.+ .+++.++..+....+.+ +|+|.++++.++.
T Consensus 139 -~~~~~v~~~i~~~l~~~~~~---~G~~~i~~~~~~~ 171 (501)
T 2jln_A 139 -FTNLPLWIVIFGAIQVVTTF---YGITFIRWMNVFA 171 (501)
T ss_dssp -CCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHH
Confidence 44 56666655544333332 3445555554443
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.61 E-value=0.012 Score=59.71 Aligned_cols=39 Identities=15% Similarity=-0.108 Sum_probs=28.6
Q ss_pred chhhhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhh
Q 012869 318 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF 359 (454)
Q Consensus 318 ~a~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~ 359 (454)
...+..+...|+ +...++.++.+.+.+++..+..+++..
T Consensus 261 p~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~sR 299 (445)
T 3l1l_A 261 PFGDAARMALGD---TAGAIVSFCAAAGCLGSLGGWTLLAGQ 299 (445)
T ss_dssp THHHHHHHHHCT---THHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888 788888888888888887666555443
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.14 E-value=0.00046 Score=73.13 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=63.8
Q ss_pred EeeecCCCCCcccccccchhhhHHH---HHHHHHH-HHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHH
Q 012869 67 SIAFLDPGNLEGDLQSGAIAGYSLL---WLLLWAT-AVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELA 142 (454)
Q Consensus 67 a~a~idpG~i~t~~~aGA~~Gy~LL---W~llla~-~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~ 142 (454)
.++++.+.+.......+.++|+.-. |...++. ++.+.+-...-|.+. .+..|.+++||++..+.+.-+...+.
T Consensus 32 ~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~---~T~~e~l~~Rfg~~~~~~~a~~~l~~ 108 (530)
T 3dh4_A 32 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISL 108 (530)
T ss_dssp HHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3456667777777777778887644 3222222 222222222334443 58999999999987765432221111
Q ss_pred Hh-cccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhh
Q 012869 143 LI-GSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFI 181 (454)
Q Consensus 143 ~i-~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~ 181 (454)
.+ ........+.+..++.++| +|.+.++++.++.+.+
T Consensus 109 ~~~~~~~~~l~~~~~~~~~~~G--i~~~~~i~i~~~i~~~ 146 (530)
T 3dh4_A 109 YIFVNLTSVLYLGGLALETILG--IPLMYSILGLALFALV 146 (530)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 11 1222344455677888898 8999988877765444
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.12 E-value=0.0071 Score=64.84 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=64.1
Q ss_pred eeecCCCCCcccccccchhhhHHH---HHHHHHH-HHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHH-
Q 012869 68 IAFLDPGNLEGDLQSGAIAGYSLL---WLLLWAT-AVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELA- 142 (454)
Q Consensus 68 ~a~idpG~i~t~~~aGA~~Gy~LL---W~llla~-~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~- 142 (454)
+++++..+.......+.++|+... |...++. ++.+.+-...-|.+. .+..|.+++|||+..+...-+...+.
T Consensus 62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Rfg~~~~~~~ai~~l~~~ 138 (593)
T 2xq2_A 62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISLY 138 (593)
T ss_dssp GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHccCchHHHHHHHHHHHH
Confidence 345666666666667777777644 2222221 222222222334443 57999999999987765432222211
Q ss_pred HhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhh
Q 012869 143 LIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFL 185 (454)
Q Consensus 143 ~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~ 185 (454)
.+.....++.+.+..++.++| +|.+.++++.++.+.+.-.+
T Consensus 139 ~~~~~~~~l~~~~~~l~~~~G--i~~~~~i~i~~~i~~~Yt~~ 179 (593)
T 2xq2_A 139 IFVNLTSVLYLGGLALETILG--IPLMYSILGLALFALVYSIY 179 (593)
T ss_dssp HHTHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHHh
Confidence 122222345566777888898 89998887776554443333
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.01 E-value=0.014 Score=59.34 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=26.4
Q ss_pred hhhhHHHHhCCCcchHHHHHHHhHhhccccceeeeccchhh
Q 012869 319 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF 359 (454)
Q Consensus 319 a~~~L~~~~G~~~~~a~~lF~igllaag~sS~it~~~ag~~ 359 (454)
..+..++..|+ +...++.++.+.+.+++..+..+++..
T Consensus 260 ~~~~~~~~~g~---~~~~~i~~~~~~~~~~~~~~~~~~~sR 297 (444)
T 3gia_A 260 LAVAAKPFLGN---LGFLLISIGALFSISSAMNATIYGGAN 297 (444)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776 677788888888888777666555443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=90.98 E-value=0.6 Score=48.04 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=19.7
Q ss_pred HHHHHHHHHH--HhhhccchhhHHHhhhcCCchHHHH
Q 012869 100 VGLLVQLLSA--RLGVATGRHLAELCREEYPSWARMV 134 (454)
Q Consensus 100 ~~~~~Q~~~a--Rlg~vTG~~l~e~~r~~~g~~~~~~ 134 (454)
..+.+-|++. ++- +| +.-.-.++.+|++..+.
T Consensus 57 ~al~~ael~s~~~~P--~G-G~y~~~~~~~g~~~g~~ 90 (511)
T 4djk_A 57 VGLCAAEMATVDGWE--EG-GVFAWVSNTLGPRWGFA 90 (511)
T ss_dssp HHHHHHHHHTTSCC------CHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcccccCC--CC-ChhhhHHhhcCchHHHH
Confidence 4566677877 776 44 66667777788765543
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=7.34 E-value=2.5e+02 Score=32.52 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=8.1
Q ss_pred CCCcchhhhhhhc
Q 012869 48 APPFSWKKLWLFT 60 (454)
Q Consensus 48 ~~~~~~~~~~~~l 60 (454)
.++-++++++++.
T Consensus 57 ~~~v~~~~Lfrya 69 (1321)
T 4f4c_A 57 VNKVSIPQLYRYT 69 (1321)
T ss_dssp SSCCCHHHHTTTC
T ss_pred cCCCCHHHHhhcc
Confidence 4456677777653
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=7.11 E-value=94 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=13.7
Q ss_pred ccchhhHHHHHHHHHHHH
Q 012869 187 NYGVRKLEAVFAVLIATM 204 (454)
Q Consensus 187 ~yg~~~lE~~~~~lv~~m 204 (454)
.|||.|.|.+..++.+++
T Consensus 74 pyG~~R~E~l~al~~~~~ 91 (306)
T 3j1z_P 74 RYGHGKAEPLAALAQSAF 91 (306)
T ss_dssp SSCCTTHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHH
Confidence 379999999877765544
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=5.34 E-value=1.6e+03 Score=22.93 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=9.0
Q ss_pred cchhhHHHHHHHHH
Q 012869 188 YGVRKLEAVFAVLI 201 (454)
Q Consensus 188 yg~~~lE~~~~~lv 201 (454)
.|.|++-++...+.
T Consensus 258 kGIk~LS~~N~~la 271 (509)
T 2wsw_A 258 KGVKIASDVRTYLS 271 (509)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777765543
No 10
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=4.56 E-value=2e+02 Score=23.42 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=10.4
Q ss_pred cchhhHHHhhhcCCc
Q 012869 115 TGRHLAELCREEYPS 129 (454)
Q Consensus 115 TG~~l~e~~r~~~g~ 129 (454)
||..|.++++++||+
T Consensus 2 tG~eL~~ll~~KWG~ 16 (110)
T 2ljw_A 2 TGQELRQLLLDKWGY 16 (110)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHhCC
Confidence 667777777777664
Done!