Query 012869
Match_columns 454
No_of_seqs 198 out of 1266
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 17:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012869.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012869hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fc6a1 g.66.1.1 (A:8-44) Targ 12.3 24 0.0017 21.3 0.2 18 1-18 3-20 (37)
2 d2qfia2 f.59.1.1 (A:5-208) Fer 4.8 29 0.0021 28.8 -2.8 16 188-203 69-84 (204)
3 d1pvma3 g.41.13.1 (A:143-178) 3.6 3.1E+02 0.022 15.6 2.1 29 12-40 2-30 (36)
4 d2iuba2 f.17.3.1 (A:286-349) M 3.4 3.3E+02 0.024 17.5 2.6 8 413-420 15-22 (64)
5 d2yvxa3 f.57.1.1 (A:276-448) M 3.1 9.9E+02 0.072 18.4 6.0 90 191-296 9-98 (173)
6 d1tdja2 d.58.18.2 (A:336-423) 2.8 3.3E+02 0.024 19.0 2.2 21 50-70 14-34 (88)
7 d2bs2c1 f.21.2.1 (C:1-254) Fum 2.8 8.8E+02 0.064 19.9 5.6 54 71-125 154-207 (254)
8 d2vv5a3 f.34.1.1 (A:27-112) Me 2.6 7.8E+02 0.057 16.1 5.4 14 86-99 1-14 (86)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 2.4 2.4E+02 0.018 16.3 0.7 7 166-172 2-8 (34)
10 d1jt8a_ b.40.4.5 (A:) Archaeal 2.3 2.3E+02 0.017 20.5 0.7 20 1-20 1-20 (102)
No 1
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.32 E-value=24 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=14.0
Q ss_pred CCCccchhhhcccccccc
Q 012869 1 MPPQQHEQEQDHLLPLLA 18 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (454)
|||++++.++..+|..|+
T Consensus 3 lpp~s~~~~~~~iC~~Fs 20 (37)
T d2fc6a1 3 LPPATHRPHPTSICDNFS 20 (37)
T ss_dssp CCTTSCCCCCSCBCSHHH
T ss_pred CCcccCCCCccchhhhhh
Confidence 788888888888887664
No 2
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=4.77 E-value=29 Score=28.80 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=12.0
Q ss_pred cchhhHHHHHHHHHHH
Q 012869 188 YGVRKLEAVFAVLIAT 203 (454)
Q Consensus 188 yg~~~lE~~~~~lv~~ 203 (454)
|||.|+|.+...+.++
T Consensus 69 yG~~r~E~l~~l~~~~ 84 (204)
T d2qfia2 69 FGHGKAESLAALAQSM 84 (204)
T ss_dssp CSCCTHHHHHHHTTTT
T ss_pred cchhHHHHHHHHHHHH
Confidence 6888999987665444
No 3
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=3.56 E-value=3.1e+02 Score=15.60 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=20.6
Q ss_pred cccccccchhhhhccCCCCcEEEeecCCC
Q 012869 12 HLLPLLADDREERAYDPTEKVVVIGLDDG 40 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (454)
+|||-.--..-+..|+..+.|.+.+-.+.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T d1pvma3 2 HLCPKCGVGVLEPVYNEKGEIKVFRCSNP 30 (36)
T ss_dssp CBCTTTSSSBEEEEECTTSCEEEEEESCT
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 56776655555668888888888876654
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.43 E-value=3.3e+02 Score=17.48 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=3.1
Q ss_pred ccccchhh
Q 012869 413 VQIPFALI 420 (454)
Q Consensus 413 ~~lP~~~~ 420 (454)
+.+|...+
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33443333
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.08 E-value=9.9e+02 Score=18.39 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeeccCCChHHHHhhhceeeEEeccchhhhhhhhhhhcccCCCccc
Q 012869 191 RKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKG 270 (454)
Q Consensus 191 ~~lE~~~~~lv~~m~l~f~~~~~~~~P~~~~v~~g~~~P~~~~~~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~ 270 (454)
+|+-.+...+++-+..+++...|...-+-..++. .++|- +.-.-|+.|+ ||..+--|....++-
T Consensus 9 ~RlpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~La-~fiPl-----i~~~gGN~G~---------Qs~ti~iR~La~g~i- 72 (173)
T d2yvxa3 9 ARVRWLVILILTGMVTSSILQGFESVLEAVTALA-FYVPV-----LLGTGGNTGN---------QSATLIIRALATRDL- 72 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTTTTTSCC-CCSHH-----HHHHHHHHHH---------HHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----HhcCCchHHH---------HHHHHHHHHHhcccc-
Confidence 4555666666666667777776654333221121 23443 2223455554 655432222211110
Q ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHH
Q 012869 271 RVQEALRYYSIESTLALVVSFMINLF 296 (454)
Q Consensus 271 ~~~~~l~~~~~D~~~g~~vs~~i~~~ 296 (454)
+.++..|.-+.|..+|.+.+.+....
T Consensus 73 ~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 73 DLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11334556677888888776655543
No 6
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.85 E-value=3.3e+02 Score=19.02 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=15.5
Q ss_pred CcchhhhhhhcCCCceEEeee
Q 012869 50 PFSWKKLWLFTGPGFLMSIAF 70 (454)
Q Consensus 50 ~~~~~~~~~~lGPG~l~a~a~ 70 (454)
|.++++|+..+||==|+--.|
T Consensus 14 pGaf~~F~~~lg~~nITeF~Y 34 (88)
T d1tdja2 14 KGSFLKFCQLLGGRSVTEFNY 34 (88)
T ss_dssp SSCSHHHHHTTSSSEEEEEEE
T ss_pred ccHHHHHHHhcCcCceEEEEE
Confidence 568999999999865555444
No 7
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=2.80 E-value=8.8e+02 Score=19.85 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=37.0
Q ss_pred cCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhh
Q 012869 71 LDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCRE 125 (454)
Q Consensus 71 idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~ 125 (454)
+|+.+.....+.+-.+.+-+++++.+..=...=+..++.++|..+++. .+..|+
T Consensus 154 ~~~~~~~~~~~~~~~~~fY~l~l~av~lH~~~Gl~s~~~~wG~~~~~~-~~~~R~ 207 (254)
T d2bs2c1 154 IGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDGET-PDKTRA 207 (254)
T ss_dssp CSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTC-HHHHHH
T ss_pred CCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCcc-hHhHHH
Confidence 355555555566666666777777766667778889999999988776 334444
No 8
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.58 E-value=7.8e+02 Score=16.09 Aligned_cols=14 Identities=7% Similarity=-0.054 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHH
Q 012869 86 AGYSLLWLLLWATA 99 (454)
Q Consensus 86 ~Gy~LLW~llla~~ 99 (454)
||.+++..+++..+
T Consensus 1 y~~~il~~l~il~i 14 (86)
T d2vv5a3 1 YAVNIVAALAIIIV 14 (86)
T ss_dssp GGSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56677666655443
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.39 E-value=2.4e+02 Score=16.26 Aligned_cols=7 Identities=43% Similarity=1.123 Sum_probs=3.5
Q ss_pred cccchhh
Q 012869 166 LPLWSGV 172 (454)
Q Consensus 166 ip~~~~v 172 (454)
+|+|.-.
T Consensus 2 iPLWlv~ 8 (34)
T d2axtj1 2 IPLWIVA 8 (34)
T ss_dssp CCHHHHH
T ss_pred CcEEEee
Confidence 4555533
No 10
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.34 E-value=2.3e+02 Score=20.51 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=14.9
Q ss_pred CCCccchhhhccccccccch
Q 012869 1 MPPQQHEQEQDHLLPLLADD 20 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (454)
|..+|++|+.+.-+|.-+++
T Consensus 1 m~~~~~~~~~~~~lp~~ee~ 20 (102)
T d1jt8a_ 1 MAEQQQEQQIRVRIPRKEEN 20 (102)
T ss_dssp CCCCSSCCCCCCCCSCCSSC
T ss_pred CCccccCcceeeECCCCCCC
Confidence 77888888888877765543
Done!