BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012870
(454 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544712|ref|XP_002513417.1| GTP-binding protein, putative [Ricinus communis]
gi|223547325|gb|EEF48820.1| GTP-binding protein, putative [Ricinus communis]
Length = 417
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/403 (83%), Positives = 361/403 (89%), Gaps = 7/403 (1%)
Query: 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
M R A + LIP L+ SS RN L +S RRFSS+ KISMSL+AG
Sbjct: 1 MARVVARSTLIPTLS-------SSFICRNPYLFTKTSQFINNSNRRFSSSFKISMSLKAG 53
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG VAVPDPRLHVLSGLSKSQ+AVP
Sbjct: 54 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGTVAVPDPRLHVLSGLSKSQRAVP 113
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV+GKVDPKSD+
Sbjct: 114 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVSGKVDPKSDI 173
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVT 240
DVINLELVFSDLDQIEKR+EKLKKGKAKDSQSKLKE+AEK+ALE+IQ ALMDGKPARSV
Sbjct: 174 DVINLELVFSDLDQIEKRLEKLKKGKAKDSQSKLKEEAEKSALERIQGALMDGKPARSVA 233
Query: 241 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 300
L+DFE+D+IK LCLLTMKP+IYVANVAESDLA P +NPHV EVMNLASDLQSG V +SAQ
Sbjct: 234 LSDFEKDAIKHLCLLTMKPVIYVANVAESDLAVPDNNPHVKEVMNLASDLQSGLVAVSAQ 293
Query: 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 360
VE+ELTELP +ER EYL SLGVSESGLGNLIR+TY+LLGLRTYFTSGEKETKAWTI AGM
Sbjct: 294 VESELTELPVDERTEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILAGM 353
Query: 361 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG++
Sbjct: 354 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGVL 396
>gi|225462191|ref|XP_002269074.1| PREDICTED: GTP-dependent nucleic acid-binding protein engD-like
[Vitis vinifera]
Length = 422
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/405 (83%), Positives = 367/405 (90%), Gaps = 6/405 (1%)
Query: 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMS--LR 58
M RTA C+ L+P L P +SS FT++ L + + + FSS+S +S L+
Sbjct: 1 MARTA-CHTLLPTLAF---PFKSSFFTKSPILCPSQSLFFHAFPKPFSSSSSAKISMSLK 56
Query: 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118
AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS +SKSQ+
Sbjct: 57 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISKSQRV 116
Query: 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS 178
VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS
Sbjct: 117 VPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS 176
Query: 179 DVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
D+DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE+AEK+ALE+I++ALMDGKPARS
Sbjct: 177 DIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGKPARS 236
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
VTL DFE+D+IK LCLLTMKPIIYVANVAESDLA+PGSNP+V EVMNLAS+LQSG VTIS
Sbjct: 237 VTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGIVTIS 296
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
AQVE+ELTELPSEER E+L SLGVSESGLGNLIR+TYSLLGLRTYFTSGEKETKAWTI A
Sbjct: 297 AQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILA 356
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL+
Sbjct: 357 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLL 401
>gi|296082781|emb|CBI21786.3| unnamed protein product [Vitis vinifera]
Length = 370
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/349 (91%), Positives = 340/349 (97%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS +SK
Sbjct: 1 MSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV
Sbjct: 61 SQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DPKSD+DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE+AEK+ALE+I++ALMDGK
Sbjct: 121 DPKSDIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSVTL DFE+D+IK LCLLTMKPIIYVANVAESDLA+PGSNP+V EVMNLAS+LQSG
Sbjct: 181 PARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGI 240
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTISAQVE+ELTELPSEER E+L SLGVSESGLGNLIR+TYSLLGLRTYFTSGEKETKAW
Sbjct: 241 VTISAQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAW 300
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL+
Sbjct: 301 TILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLL 349
>gi|449453790|ref|XP_004144639.1| PREDICTED: GTP-dependent nucleic acid-binding protein EngD-like
[Cucumis sativus]
gi|449523505|ref|XP_004168764.1| PREDICTED: GTP-dependent nucleic acid-binding protein EngD-like
[Cucumis sativus]
Length = 421
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/409 (82%), Positives = 368/409 (89%), Gaps = 15/409 (3%)
Query: 1 MVRTAACNYLIPALTLLPKPME----SSLFTRNANL--IGVLGITTTSSRRRFSSASKIS 54
M RT C+++IP+L LLP SLF+R + + VLG RRFSS+SKIS
Sbjct: 1 MARTV-CSHIIPSL-LLPSKSSFFGTHSLFSRPSQFDHVMVLG-------RRFSSSSKIS 51
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG+VAVPDPRLH LS LSK
Sbjct: 52 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSK 111
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+AV AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK+
Sbjct: 112 SQRAVAASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKI 171
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DPK+D+DVINLELVFSDLDQIEKR+EKLKKGKAKDSQSK+KE+AEK+ALEKIQ+ L+DGK
Sbjct: 172 DPKTDIDVINLELVFSDLDQIEKRLEKLKKGKAKDSQSKVKEEAEKSALEKIQKVLLDGK 231
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSVTL DFE+D+IK LCLLTMKP+IYVANVAESDLA+P SN HV EVM LAS+LQSG
Sbjct: 232 PARSVTLTDFEKDAIKHLCLLTMKPVIYVANVAESDLAEPASNLHVKEVMGLASELQSGI 291
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+SAQVE+EL+ELPSEER EYL SLGVSESGLGNLIR+TY+LLGLRTYFTSGEKETKAW
Sbjct: 292 VTVSAQVESELSELPSEERFEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAW 351
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGMTAPQAAGVIHSDFE+GFIRAETVAYDDFVAAGS AAAREKGL+
Sbjct: 352 TILAGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFAAAREKGLL 400
>gi|356526427|ref|XP_003531819.1| PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine
max]
Length = 420
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/407 (80%), Positives = 362/407 (88%), Gaps = 19/407 (4%)
Query: 5 AACNYL--IPALTLLPKPMESSLFTRNANLIGVLGITTTSSR-----RRFSSASKISMS- 56
AACN+L +P+L P++S+LFT + ++TT +R RRFSS+S
Sbjct: 4 AACNHLHLVPSLV---HPLKSTLFTNHT-------LSTTRTRFYGIHRRFSSSSSKISMS 53
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RLHVLS LSKSQ
Sbjct: 54 LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQ 113
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+AVPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP
Sbjct: 114 RAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 173
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
KSD+DVINLELVFSDLDQIEKR++KLKKGKAKDSQ KLKE+AEK+ALEKI++ALMDGKPA
Sbjct: 174 KSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQ-KLKEEAEKSALEKIREALMDGKPA 232
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSVTL DFERD++K LCLLTMKP+IYVANVAESDLADP +N +V +V N+ S+LQS VT
Sbjct: 233 RSVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVT 292
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAELTELP EER EYL SLGVSESGLGNLIR+TY LLGLRTYFTSGEKETKAWTI
Sbjct: 293 ISAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTI 352
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGMTAPQAAGVIHSDFEKGFIRAETV+Y+DFVAAGSL+AAREKGL+
Sbjct: 353 LAGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGLL 399
>gi|42562778|ref|NP_176001.2| putative GTP-binding protein [Arabidopsis thaliana]
gi|332195215|gb|AEE33336.1| putative GTP-binding protein [Arabidopsis thaliana]
Length = 421
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/403 (77%), Positives = 353/403 (87%), Gaps = 10/403 (2%)
Query: 5 AACNYLIPALTLLPKP----MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
AAC+ ++ A+ LLP LF+ N+ +GVL T +R FSS K+SMSL+AG
Sbjct: 4 AACSSVVTAMALLPSKSLLCRNQLLFSGNSKFVGVL----TLQKRCFSS--KVSMSLKAG 57
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LS SQK VP
Sbjct: 58 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVP 117
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI+HVNGKVDPKSD+
Sbjct: 118 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDI 177
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVT 240
DVINLEL+F DLDQI KR+E+LKKGKAKDSQSK+KE+AEK+ALE+IQ+AL++GKPARSV
Sbjct: 178 DVINLELIFCDLDQIGKRIERLKKGKAKDSQSKVKEEAEKSALERIQEALLEGKPARSVA 237
Query: 241 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 300
L+D E + +K LCLLTMKP+IYVANVAE+DLA+P N +V EV L+SDLQSG V +SAQ
Sbjct: 238 LSDLEMEVVKHLCLLTMKPMIYVANVAETDLAEPEKNAYVEEVKGLSSDLQSGHVVVSAQ 297
Query: 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 360
VE+ELTELP EER EYL SLGVSESGLGNLIR+TYSLLGL+TYFTSGEKET+AWTI AGM
Sbjct: 298 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 357
Query: 361 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TAPQAAGVIHSDFEKGFIRAETVAY+DFV AGS+AAAREKGL+
Sbjct: 358 TAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGLL 400
>gi|297847982|ref|XP_002891872.1| hypothetical protein ARALYDRAFT_474672 [Arabidopsis lyrata subsp.
lyrata]
gi|297337714|gb|EFH68131.1| hypothetical protein ARALYDRAFT_474672 [Arabidopsis lyrata subsp.
lyrata]
Length = 421
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 316/403 (78%), Positives = 351/403 (87%), Gaps = 10/403 (2%)
Query: 5 AACNYLIPALTLLPKP----MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
AAC ++ AL LP LF+ N+ +GVL T +R F ASK+SMSL+AG
Sbjct: 4 AACTSVVTALAFLPSTSLLCRNQLLFSGNSKFVGVL----TLQKRCF--ASKVSMSLKAG 57
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LS SQK VP
Sbjct: 58 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVP 117
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI+HVNGKVDPKSD+
Sbjct: 118 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDI 177
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVT 240
DVINLEL+F DLDQI KR+E+LKKGKAKDSQSK KE+AEK+ALE+IQ+AL+DGKPARSV
Sbjct: 178 DVINLELIFCDLDQIGKRIERLKKGKAKDSQSKNKEEAEKSALERIQEALLDGKPARSVA 237
Query: 241 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 300
L+D E + +K LCLLTMKP+IYVANVAE+DLA+P N +V EV L+SDLQSG V +SAQ
Sbjct: 238 LSDLEMEVVKHLCLLTMKPMIYVANVAENDLAEPEKNAYVEEVKGLSSDLQSGHVVVSAQ 297
Query: 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 360
VE+ELTELP EER EYL SLGVSESGLGNLIR+TYSLLGL+TYFTSGEKET+AWTI AGM
Sbjct: 298 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 357
Query: 361 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TAPQAAGVIHSDFEKGFIRAETVAY+DFV+AGSLAAAREKGL+
Sbjct: 358 TAPQAAGVIHSDFEKGFIRAETVAYEDFVSAGSLAAAREKGLL 400
>gi|224056743|ref|XP_002299001.1| predicted protein [Populus trichocarpa]
gi|222846259|gb|EEE83806.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 307/349 (87%), Positives = 334/349 (95%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL+VLS LSK
Sbjct: 1 MSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLNVLSELSK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+AVPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF+DNDIVHVNG V
Sbjct: 61 SQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIVHVNGNV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DPKSD+DVINLELVFSDLDQIEKR+EKLKKGKA+DSQSKLKE+AEK+ALE+I++ALMDGK
Sbjct: 121 DPKSDIDVINLELVFSDLDQIEKRLEKLKKGKARDSQSKLKEEAEKSALERIREALMDGK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L DFE+D++K LCLLTMKP+IYVANVAES+LAD G+NP+V EVMNLAS+LQSG
Sbjct: 181 PARSVALTDFEKDAVKHLCLLTMKPVIYVANVAESELADAGNNPYVKEVMNLASELQSGL 240
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTISAQVE+ELTELP EER E+L SLGVSESGLGNLI +TY LLGLRTYFTSGEKE+KAW
Sbjct: 241 VTISAQVESELTELPFEERNEFLKSLGVSESGLGNLITATYILLGLRTYFTSGEKESKAW 300
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGMTAPQAAGVIHSDFEKGFIRAETV+YDDFVAAGSLAAAREKGL+
Sbjct: 301 TIHAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGLL 349
>gi|6056379|gb|AAF02843.1|AC009894_14 Similar to GTP-binding protein [Arabidopsis thaliana]
Length = 419
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 313/403 (77%), Positives = 351/403 (87%), Gaps = 12/403 (2%)
Query: 5 AACNYLIPALTLLPKP----MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
AAC+ ++ A+ LLP LF+ N+ +GVL T +R FSS K+SMSL+AG
Sbjct: 4 AACSSVVTAMALLPSKSLLCRNQLLFSGNSKFVGVL----TLQKRCFSS--KVSMSLKAG 57
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LS SQK VP
Sbjct: 58 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVP 117
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI+HVNGKVDPKSD+
Sbjct: 118 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDI 177
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVT 240
DVINLEL+F DLDQI KR+E+LKKGKAKDSQSK E+AEK+ALE+IQ+AL++GKPARSV
Sbjct: 178 DVINLELIFCDLDQIGKRIERLKKGKAKDSQSK--EEAEKSALERIQEALLEGKPARSVA 235
Query: 241 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 300
L+D E + +K LCLLTMKP+IYVANVAE+DLA+P N +V EV L+SDLQSG V +SAQ
Sbjct: 236 LSDLEMEVVKHLCLLTMKPMIYVANVAETDLAEPEKNAYVEEVKGLSSDLQSGHVVVSAQ 295
Query: 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 360
VE+ELTELP EER EYL SLGVSESGLGNLIR+TYSLLGL+TYFTSGEKET+AWTI AGM
Sbjct: 296 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 355
Query: 361 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TAPQAAGVIHSDFEKGFIRAETVAY+DFV AGS+AAAREKGL+
Sbjct: 356 TAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGLL 398
>gi|388499262|gb|AFK37697.1| unknown [Lotus japonicus]
Length = 424
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 319/408 (78%), Positives = 355/408 (87%), Gaps = 10/408 (2%)
Query: 1 MVRTAACN-YLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMS--- 56
M R A + +++P+ P++S+LF RN L + + RFS +S S
Sbjct: 1 MARVACYHLHMVPSFV---HPLKSTLF-RNHTLFTIHSPHRYGVQPRFSFSSSSSSKISM 56
Query: 57 -LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RLHVLS LSKS
Sbjct: 57 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKS 116
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
Q+ VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF+DNDI+HVNGKVD
Sbjct: 117 QRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVD 176
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
PKSD+DVINLELVF DLDQIEKR++KLKKGK KDSQ ++KE+AEK+ALEKI+ AL+DGKP
Sbjct: 177 PKSDIDVINLELVFCDLDQIEKRLDKLKKGKPKDSQ-RVKEEAEKSALEKIRVALLDGKP 235
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
ARSVTL D ERD++K LCLLTMKPIIYVANVAESDLADP N +VN+V N+AS+LQSG V
Sbjct: 236 ARSVTLTDSERDAVKHLCLLTMKPIIYVANVAESDLADPAKNNYVNDVTNVASELQSGIV 295
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
T+SAQVEAELTEL +EER EYL SLGVSESGLGNLIR+TYSLLGLRTYFTSGEKETKAWT
Sbjct: 296 TVSAQVEAELTELATEERKEYLNSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWT 355
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGMTAPQAAGVIHSDFEKGFIRAETV+YDDFVAAGSLAAAREKG++
Sbjct: 356 ILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGVL 403
>gi|388508988|gb|AFK42560.1| unknown [Medicago truncatula]
Length = 417
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/347 (87%), Positives = 324/347 (93%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LSKSQ
Sbjct: 50 LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSDLSKSQ 109
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF+DNDI+HVNGKVDP
Sbjct: 110 RMVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDP 169
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
KSD+DVINLELVF+DLDQIEKR++KLKKGK KDSQSK+KE+AEK ALEKI+ AL+DGKPA
Sbjct: 170 KSDIDVINLELVFTDLDQIEKRLDKLKKGKTKDSQSKVKEEAEKTALEKIRVALLDGKPA 229
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSVTL DFER+S+KQLCLLTMKPIIYVANVAESDLAD +N +V V N+AS+LQSG VT
Sbjct: 230 RSVTLTDFERESVKQLCLLTMKPIIYVANVAESDLADATNNDYVTGVKNVASELQSGVVT 289
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL+EL EER EYL LGVSESGLGNLIR+TY LLGLRTYFTSGEKETKAWTI
Sbjct: 290 ISAQVEAELSELALEERQEYLKPLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTI 349
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSL AAREKGL+
Sbjct: 350 LAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLGAAREKGLL 396
>gi|12957710|gb|AAK09228.1|AC084320_15 putative GTP-binding protein [Oryza sativa Japonica Group]
gi|108711387|gb|ABF99182.1| GTP-dependent nucleic acid-binding protein engD, putative,
expressed [Oryza sativa Japonica Group]
Length = 431
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/361 (79%), Positives = 327/361 (90%), Gaps = 2/361 (0%)
Query: 45 RRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
RRF+S ++ISMSLRAGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTI PNVG+VA+P
Sbjct: 50 RRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIP 109
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
D RLHVLS LSKS++ +P S+E VDIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCF
Sbjct: 110 DARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCF 169
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA 222
ED+DIVHV+GKVDPKSD+DVINLEL+FSDLDQIEKR++KLKK K KD Q K+KE AE+
Sbjct: 170 EDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTG 229
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
LEKIQ LMDGKPARSV L D E+++I+ LCLLTMKP+IYVANV ESDLA+PG+NPHV E
Sbjct: 230 LEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKE 289
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
V LA+DL+SG VTISAQVEAEL ELP EERVEYL SLGV+ESGLGNL+++TY LLGLRT
Sbjct: 290 VAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRT 349
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
YFT+G+KETKAWTI AGMTAPQAAGVIHSDF+KGFIRAETV+YDDFVAAGSL AREKGL
Sbjct: 350 YFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGL 409
Query: 403 V 403
+
Sbjct: 410 L 410
>gi|242032799|ref|XP_002463794.1| hypothetical protein SORBIDRAFT_01g006280 [Sorghum bicolor]
gi|241917648|gb|EER90792.1| hypothetical protein SORBIDRAFT_01g006280 [Sorghum bicolor]
Length = 431
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/387 (75%), Positives = 334/387 (86%), Gaps = 4/387 (1%)
Query: 17 LPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAV 76
LP P SS ++ SS R +++ISMSLRAGIVGLPNVGKSTLFNA+
Sbjct: 28 LPSPCGSSALLQHWRWSRASRARRFSSGR----SARISMSLRAGIVGLPNVGKSTLFNAI 83
Query: 77 VENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136
VENGKAQAANFPFCTI PNVG+VA+PDPRL VLS LSKSQ+ VP S+E VDIAGLVKGAS
Sbjct: 84 VENGKAQAANFPFCTINPNVGVVAIPDPRLQVLSKLSKSQQTVPTSIELVDIAGLVKGAS 143
Query: 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196
+GEGLGN+FLS+IREVDSILQVVRCFED+DIVHVNGKVDP+SD+DVINLEL+FSDL+QIE
Sbjct: 144 KGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVNGKVDPRSDIDVINLELIFSDLEQIE 203
Query: 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLT 256
KR++KL K K KD+Q K KE AEK+ LEKIQQALM+GKPARSV L + E+++I+ LCLLT
Sbjct: 204 KRLDKLNKSKTKDAQVKAKEQAEKSGLEKIQQALMEGKPARSVDLAEHEKEAIQHLCLLT 263
Query: 257 MKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEY 316
MKP+IYVANV ESDLA+P SNPHV EV ASDLQSG VTISAQVEAEL ELP EERVEY
Sbjct: 264 MKPVIYVANVTESDLAEPDSNPHVKEVAKAASDLQSGMVTISAQVEAELAELPLEERVEY 323
Query: 317 LASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKG 376
L SLGV+ESGLGNL+++TY+LLGLRTYFT+GEKETKAWTI +GMTAPQAAGVIHSDF+KG
Sbjct: 324 LKSLGVAESGLGNLVKATYNLLGLRTYFTTGEKETKAWTILSGMTAPQAAGVIHSDFQKG 383
Query: 377 FIRAETVAYDDFVAAGSLAAAREKGLV 403
FIRAETV+YDDFVAAGSL AREKGL+
Sbjct: 384 FIRAETVSYDDFVAAGSLGVAREKGLL 410
>gi|218193845|gb|EEC76272.1| hypothetical protein OsI_13746 [Oryza sativa Indica Group]
gi|222625906|gb|EEE60038.1| hypothetical protein OsJ_12813 [Oryza sativa Japonica Group]
Length = 428
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/361 (79%), Positives = 327/361 (90%), Gaps = 2/361 (0%)
Query: 45 RRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
RRF+S ++ISMSLRAGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTI PNVG+VA+P
Sbjct: 47 RRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIP 106
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
D RLHVLS LSKS++ +P S+E VDIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCF
Sbjct: 107 DARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCF 166
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA 222
ED+DIVHV+GKVDPKSD+DVINLEL+FSDLDQIEKR++KLKK K KD Q K+KE AE+
Sbjct: 167 EDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTG 226
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
LEKIQ LMDGKPARSV L D E+++I+ LCLLTMKP+IYVANV ESDLA+PG+NPHV E
Sbjct: 227 LEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKE 286
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
V LA+DL+SG VTISAQVEAEL ELP EERVEYL SLGV+ESGLGNL+++TY LLGLRT
Sbjct: 287 VAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRT 346
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
YFT+G+KETKAWTI AGMTAPQAAGVIHSDF+KGFIRAETV+YDDFVAAGSL AREKGL
Sbjct: 347 YFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGL 406
Query: 403 V 403
+
Sbjct: 407 L 407
>gi|224030549|gb|ACN34350.1| unknown [Zea mays]
gi|414873180|tpg|DAA51737.1| TPA: hypothetical protein ZEAMMB73_901646 [Zea mays]
Length = 431
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/391 (75%), Positives = 337/391 (86%), Gaps = 8/391 (2%)
Query: 15 TLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSS--ASKISMSLRAGIVGLPNVGKSTL 72
T LP P SS ++ + RRFSS A++ISMSLRAGIVGLPNVGKSTL
Sbjct: 26 TTLPSPYGSSALHQHWRW------SRACRTRRFSSGRAARISMSLRAGIVGLPNVGKSTL 79
Query: 73 FNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132
FNA+VENGKAQAANFPFCTI PNVG+VA+PDPRL VLS LSKSQ+ VP S+E VDIAGLV
Sbjct: 80 FNAIVENGKAQAANFPFCTISPNVGVVAIPDPRLQVLSKLSKSQQTVPTSIELVDIAGLV 139
Query: 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDL 192
KGAS+GEGLGN+FLS+IREVDSILQVVRCFED+DIVHVNGKVDP+SD+DVINLEL+FSDL
Sbjct: 140 KGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVNGKVDPRSDIDVINLELIFSDL 199
Query: 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQL 252
+QIEKR++KL K K KD+Q K+KE AEK+ LEKIQQALM+GKPARSV L + E+++IK L
Sbjct: 200 EQIEKRLDKLNKSKTKDTQVKVKEQAEKSGLEKIQQALMEGKPARSVDLAEHEKEAIKHL 259
Query: 253 CLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEE 312
LLTMKP+IYVANV ESDLA+P SN HV EV ASDLQSG VTISAQVEAEL ELP EE
Sbjct: 260 YLLTMKPVIYVANVTESDLAEPDSNSHVKEVAKAASDLQSGMVTISAQVEAELAELPLEE 319
Query: 313 RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSD 372
RVEYL SLGV+ESGLGNL+++TY+LLGLRTYFT+G+KETKAWTI +GMTAPQAAGVIHSD
Sbjct: 320 RVEYLKSLGVAESGLGNLVKATYNLLGLRTYFTTGDKETKAWTILSGMTAPQAAGVIHSD 379
Query: 373 FEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
F+KGFIRAETV+YDDFVAAGSL AREKGL+
Sbjct: 380 FQKGFIRAETVSYDDFVAAGSLGVAREKGLL 410
>gi|357113186|ref|XP_003558385.1| PREDICTED: GTP-dependent nucleic acid-binding protein engD-like
[Brachypodium distachyon]
Length = 430
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/361 (78%), Positives = 326/361 (90%), Gaps = 2/361 (0%)
Query: 45 RRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
RRFSS ++ISMSLRAGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTI PN G+VA+P
Sbjct: 49 RRFSSGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNTGVVAIP 108
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
DPRLHVLSGLSKS++ VP S+E VDIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCF
Sbjct: 109 DPRLHVLSGLSKSKQTVPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCF 168
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA 222
ED+DIVHVNGKVDPKSD+DVINLEL+F DL+QIEKR++KLKK K KD Q K+KE+AE++
Sbjct: 169 EDDDIVHVNGKVDPKSDIDVINLELIFCDLEQIEKRLDKLKKSKTKDPQVKVKEEAERSG 228
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
LEKI +ALMDGKPARSV L D E+++++ L LLTMKP+IYVANV ESDLA+P NPHV E
Sbjct: 229 LEKILKALMDGKPARSVELADHEKEAVQHLYLLTMKPVIYVANVTESDLAEPDQNPHVKE 288
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
V LA +LQSG VTISAQVEAEL+ELP EERVEYL SL V+ESGLG L+++TY+LLGLRT
Sbjct: 289 VAKLALELQSGMVTISAQVEAELSELPLEERVEYLKSLDVAESGLGVLVKATYNLLGLRT 348
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
YFT+GE+ETKAWTI AGMTAPQAAGVIHSDF+KGFIRAETV+YDDFVA GSL AAREKG+
Sbjct: 349 YFTTGEQETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVATGSLGAAREKGV 408
Query: 403 V 403
+
Sbjct: 409 L 409
>gi|326511136|dbj|BAJ87582.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 438
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/361 (79%), Positives = 325/361 (90%), Gaps = 2/361 (0%)
Query: 45 RRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
RR+SS +KISMSLRAGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTI PN G+VA+P
Sbjct: 57 RRYSSGRNAKISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNTGVVAIP 116
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
DPRL VLS LSKS++ VP S+E VDIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCF
Sbjct: 117 DPRLQVLSKLSKSKQTVPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCF 176
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA 222
ED+DIVHVNGKVDPKSD+DVINLEL+F DL+QIEKR++KLKK K KD Q K+KE AE++
Sbjct: 177 EDDDIVHVNGKVDPKSDIDVINLELIFCDLEQIEKRLDKLKKSKTKDPQVKVKEGAERSG 236
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
LEKI ALMDGKPARSV L D E+++I+ L LLTMKP+IYVANV ESDLADP NPHV E
Sbjct: 237 LEKILDALMDGKPARSVDLPDHEKEAIQHLYLLTMKPVIYVANVTESDLADPDKNPHVQE 296
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
V LAS+L+SG VTISAQVEAEL+ELP EERVEYL SL V+ESGLGNL+++TY+LLGLRT
Sbjct: 297 VAKLASELKSGMVTISAQVEAELSELPLEERVEYLNSLDVAESGLGNLVKATYNLLGLRT 356
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
YFT+GE+ETKAWTI +GMTAPQAAGVIHSDF+KGFIRAETV+YDDFVAAGSL AAREKGL
Sbjct: 357 YFTTGEQETKAWTIISGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGAAREKGL 416
Query: 403 V 403
+
Sbjct: 417 M 417
>gi|302767476|ref|XP_002967158.1| hypothetical protein SELMODRAFT_144847 [Selaginella moellendorffii]
gi|300165149|gb|EFJ31757.1| hypothetical protein SELMODRAFT_144847 [Selaginella moellendorffii]
Length = 376
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 262/354 (74%), Positives = 312/354 (88%)
Query: 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL 109
+SKISMSLR+GIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPNVGIVAVPD RL VL
Sbjct: 2 SSKISMSLRSGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNVGIVAVPDTRLSVL 61
Query: 110 SGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH 169
+ +S S++ VPAS+EFVDIAGLVKGAS+GEGLGNKFL HIREVDSI+QVVRCF+D+DI+H
Sbjct: 62 TDISSSKQTVPASMEFVDIAGLVKGASKGEGLGNKFLQHIREVDSIVQVVRCFDDSDILH 121
Query: 170 VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229
VNGKVDP++D+D+INLEL FSD+ QIEKR+EKLKKG+AKD Q+K KED E AALE+I +A
Sbjct: 122 VNGKVDPEADIDIINLELAFSDIAQIEKRLEKLKKGRAKDPQTKAKEDMEAAALERINEA 181
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L+ GK AR+V L++ ER ++QLCLLTMKP+IY ANVAE+DL DP N +V V+ A+D
Sbjct: 182 LLAGKAARTVDLSNDERKQVQQLCLLTMKPVIYAANVAETDLGDPSKNEYVQRVVKTAAD 241
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
L S V +SAQVE+EL EL ++ER E+L SLG +E GLG+L+++TYSLLGLRTYFT+GEK
Sbjct: 242 LGSEAVVVSAQVESELAELDAKERKEFLESLGAAEGGLGSLVKATYSLLGLRTYFTTGEK 301
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
ETKAWTI++GMTAPQAAGVIHSDFE+GFIRAETVAY DFV+ GSL AAREKGL+
Sbjct: 302 ETKAWTIKSGMTAPQAAGVIHSDFERGFIRAETVAYKDFVSVGSLQAAREKGLL 355
>gi|302754864|ref|XP_002960856.1| hypothetical protein SELMODRAFT_74913 [Selaginella moellendorffii]
gi|300171795|gb|EFJ38395.1| hypothetical protein SELMODRAFT_74913 [Selaginella moellendorffii]
Length = 429
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/358 (73%), Positives = 313/358 (87%)
Query: 46 RFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPR 105
R +SKISMSLR+GIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPNVGIVAVPD R
Sbjct: 51 RRGMSSKISMSLRSGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNVGIVAVPDTR 110
Query: 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165
L VL+ +S S++ VPAS+EFVDIAGLVKGAS+GEGLGNKFL HIREVDSI+QVVRCF+D+
Sbjct: 111 LSVLTDISSSKQTVPASMEFVDIAGLVKGASKGEGLGNKFLQHIREVDSIVQVVRCFDDS 170
Query: 166 DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEK 225
DI+HVNGKVDP++D+D+INLEL FSD+ QIEKR+EKLKKG+AKD Q+K KED E AALE+
Sbjct: 171 DILHVNGKVDPEADIDIINLELAFSDIAQIEKRLEKLKKGRAKDPQTKAKEDMEAAALER 230
Query: 226 IQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN 285
I +AL+ GK AR+V L++ ER ++QLCLLTMKP+IY ANVAE+DL DP N +V V+
Sbjct: 231 INEALLAGKAARTVDLSNDERKQVQQLCLLTMKPVIYAANVAETDLGDPSKNEYVQRVVK 290
Query: 286 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345
A+DL S V +SAQVE+EL EL ++ER E+L SLG +E GLG+L+++TYSLLGLRTYFT
Sbjct: 291 TAADLGSEAVVVSAQVESELAELDAKERKEFLESLGAAEGGLGSLVKATYSLLGLRTYFT 350
Query: 346 SGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+GEKETKAWTI++GMTAPQAAGVIHSDFE+GFIRAETVAY DFV+ GSL AAREKGL+
Sbjct: 351 TGEKETKAWTIKSGMTAPQAAGVIHSDFERGFIRAETVAYKDFVSVGSLQAAREKGLL 408
>gi|168019233|ref|XP_001762149.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686553|gb|EDQ72941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/349 (74%), Positives = 309/349 (88%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L++GIVGLPNVGKSTLFNA+VENGKAQAANFPFCTIEPNVG+VAVPDPRL VLS LSK
Sbjct: 1 MALKSGIVGLPNVGKSTLFNALVENGKAQAANFPFCTIEPNVGVVAVPDPRLGVLSQLSK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK VP SVEFVDIAGLVKGASQGEGLGNKFLSHIREVD I+QVVRCFED+DIVHVNGKV
Sbjct: 61 SQKTVPTSVEFVDIAGLVKGASQGEGLGNKFLSHIREVDCIVQVVRCFEDDDIVHVNGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP+ D+D+INLEL F+D+ QIEKR+E+LKKG+AKD Q K KE+ E AL++I +AL++GK
Sbjct: 121 DPEVDIDIINLELAFADMSQIEKRLERLKKGRAKDPQVKAKEEIEIEALKRINEALLNGK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR V L++ E ++ QLCLLTMKP+I+ ANV+E+DLAD NPHV++V A+DL +
Sbjct: 181 PARMVPLSEEENKAVLQLCLLTMKPVIFAANVSEADLADASGNPHVDKVKKCAADLNAEV 240
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAELTEL +EER +YL S+GV+E GLG+L+R+TY+LLGLRTYFTSGEKET+AW
Sbjct: 241 VVVSAQVEAELTELDAEERTDYLQSIGVTEGGLGSLVRATYNLLGLRTYFTSGEKETRAW 300
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGMTAPQAAGVIH+DFE+GFIRAET+AYDD+V AGS AA++KGL+
Sbjct: 301 TILAGMTAPQAAGVIHTDFERGFIRAETIAYDDYVQAGSYPAAKDKGLM 349
>gi|307105683|gb|EFN53931.1| hypothetical protein CHLNCDRAFT_25367 [Chlorella variabilis]
Length = 370
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/349 (67%), Positives = 276/349 (79%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPN+GKST+FNA+ EN KAQAANFPFCTIEPNVGIVAVPDPRL LS +S
Sbjct: 1 MALKTGIVGLPNIGKSTMFNALCENAKAQAANFPFCTIEPNVGIVAVPDPRLQELSKISG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+K +P SVEFVDIAGLVKGAS+GEGLGN+FL++IRE DSI+QVVRCFED D++HV GKV
Sbjct: 61 SEKIIPTSVEFVDIAGLVKGASKGEGLGNQFLANIRECDSIVQVVRCFEDGDVIHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D DVIN EL +D+ QIEKR+E+LKK K K + + + E AL++I AL K
Sbjct: 121 DPLDDTDVINFELALADITQIEKRLERLKKTKGKSGEEAKRNEVEAGALQRIMAALEQNK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E + ++ L LLT KP++Y ANVAE DLADPG+N HV + + A + G
Sbjct: 181 PARSVALSDEEAELVRGLYLLTAKPMVYAANVAEDDLADPGANRHVAALRSKAEEEGRGV 240
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL EL SEE EYLA LGV E GL +LIR TY LGL TYFT+GEKET+AW
Sbjct: 241 VVVSAQVEAELNELDSEEAAEYLAGLGVEEGGLKSLIRCTYQQLGLLTYFTTGEKETRAW 300
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G TAPQAAGVIH+DFEKGFIRAETVAYDDFVAAG AA+EKGL+
Sbjct: 301 TIHEGYTAPQAAGVIHTDFEKGFIRAETVAYDDFVAAGGFGAAKEKGLL 349
>gi|434391453|ref|YP_007126400.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 7428]
gi|428263294|gb|AFZ29240.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 7428]
Length = 363
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/349 (66%), Positives = 276/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLQVLGEISASA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
K D+++INLEL +DL QIE+R+E+ KK Q++ +DA E + LEK+ AL +GK
Sbjct: 122 KRDIEIINLELALADLAQIERRIERTKK------QARTSKDAQFEVSVLEKLSTALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R + L + E +IK L LL+ KPIIY ANV+E DLA N +V +V +AS +
Sbjct: 176 SVRQINLTEEEATTIKGLGLLSGKPIIYAANVSEEDLAT--GNEYVEQVRQIASQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ E+LASLGV E GL +LIR+TY LLGLRTYFTSG KET+AW
Sbjct: 234 VIVSAQVEAELVELPEEDKAEFLASLGVEEGGLKSLIRATYELLGLRTYFTSGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY D VA GS+ AA+EKGLV
Sbjct: 294 TIHAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVATGSMNAAKEKGLV 342
>gi|300863737|ref|ZP_07108668.1| GTP-dependent nucleic acid-binding protein EngD [Oscillatoria sp.
PCC 6506]
gi|300338244|emb|CBN53814.1| GTP-dependent nucleic acid-binding protein EngD [Oscillatoria sp.
PCC 6506]
Length = 363
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/347 (65%), Positives = 274/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL+VLS + S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNVGVVAVPDERLNVLSNICNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D+INLEL+ +DL QIEK++E+ +K +++L E ALEK+ L +GKP
Sbjct: 122 LRDIDIINLELILADLAQIEKKIERTRKQARTSKEAQL----ELGALEKLAAVLNEGKPT 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R +L + E +S+K L L+T KPIIY ANV+E +LA G N +V +V LAS + V
Sbjct: 178 RQCSLTEEEAESVKGLGLMTNKPIIYAANVSEDELA--GGNNYVEQVRELASKENAKVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL ELP ER ++LASLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 236 VSAQVESELVELPESERADFLASLGVEEGGLKSLIRATYELLGLRTYFTSGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFE+GFIRAETVAY D VA GS+ AA+EKGLV
Sbjct: 296 LAGMLAPQAAGVIHSDFERGFIRAETVAYKDLVATGSMNAAKEKGLV 342
>gi|56750976|ref|YP_171677.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus
elongatus PCC 6301]
gi|81299365|ref|YP_399573.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus
elongatus PCC 7942]
gi|56685935|dbj|BAD79157.1| probable GTP binding protein [Synechococcus elongatus PCC 6301]
gi|81168246|gb|ABB56586.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 363
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/347 (65%), Positives = 275/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL L+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDTRLAALTEISSSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIR+VD+I+QVVRCF+D+DI+HV G VDP
Sbjct: 62 QTVPTRIEFVDIAGLVKGASQGEGLGNQFLSHIRQVDAIVQVVRCFDDDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL QIE+R+E+L+ K +++ + AE A LE++Q L GK A
Sbjct: 122 ARDIEIINLELALADLGQIERRIERLR----KQARTNKEAAAELAVLERLQPHLDAGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R L + E I L LLT KP+IY ANV+E +LA N +V +V +LA+ + V
Sbjct: 178 RQFELTEEEEALIAPLDLLTRKPLIYGANVSEGELAT--GNAYVEQVRSLAAAENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL ELP EER +YL SLGV E GL +LIR+TY+LLGLRTYFT+G KET+AWTI
Sbjct: 236 ISAQVEAELVELPEEERADYLGSLGVEEGGLQSLIRATYALLGLRTYFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
RAGMTAPQAAGVIHSDFE+GFIRAETVAY D VA GS+ AA+EKGLV
Sbjct: 296 RAGMTAPQAAGVIHSDFERGFIRAETVAYADLVATGSMTAAKEKGLV 342
>gi|427732590|ref|YP_007078827.1| GTP-binding protein YchF [Nostoc sp. PCC 7524]
gi|427368509|gb|AFY51230.1| GTP-binding protein YchF [Nostoc sp. PCC 7524]
Length = 363
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/347 (64%), Positives = 276/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSNISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA +EFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARIEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++I+LEL +DL Q+E+R+E+ +K +++ E LEK+ AL +GK
Sbjct: 122 ARDIEIISLELGLADLAQVERRIERTRKQARTSKEAQF----EVTVLEKLAAALNEGKSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V+LN+ E I+ L LLT KPIIY ANV+E DLA N V +V +A+ + V
Sbjct: 178 RQVSLNEEEAAVIQGLGLLTNKPIIYAANVSEDDLAT--GNKFVEQVRQIAAQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL ELP E++ ++LASLGV E GL +LIR+TY+LLGLRTYFTSG+KET+AWTI
Sbjct: 236 VSAQVEAELVELPEEDKADFLASLGVEEGGLKSLIRATYTLLGLRTYFTSGQKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM+APQAAGVIHSDFE+GFIRAETVAY+D V +GSL AA+EKGLV
Sbjct: 296 HAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVTSGSLNAAKEKGLV 342
>gi|428307632|ref|YP_007144457.1| GTP-binding protein YchF [Crinalium epipsammum PCC 9333]
gi|428249167|gb|AFZ14947.1| GTP-binding protein YchF [Crinalium epipsammum PCC 9333]
Length = 363
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/347 (64%), Positives = 277/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL+VL+ +S+S
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNVGVVAVPDERLNVLAKISESA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL QIE+R+E+ +K + ++++ E +ALEK+ AL +GKPA
Sbjct: 122 LRDIEIINLELGLADLSQIERRIERTRKNARTNKEAQI----ELSALEKLSTALNEGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R VTL++ E +S+K L LLT KPIIY NV+E DLA N V +V A+ + V
Sbjct: 178 RQVTLSEEEAESVKLLGLLTSKPIIYATNVSEDDLAT--GNQWVEQVRQFATQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL +LP E++E+L SLGV E GL +LI +TY LLGLRTYFT+G KET+AWTI
Sbjct: 236 ISAQVESELVDLPEAEKLEFLESLGVKEGGLKSLIHATYELLGLRTYFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GM+APQAAGVIH+DFE+GFIRAETVAY+D VA SL+AA+EKGLV
Sbjct: 296 KTGMSAPQAAGVIHTDFERGFIRAETVAYNDLVATNSLSAAKEKGLV 342
>gi|427418921|ref|ZP_18909104.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7375]
gi|425761634|gb|EKV02487.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7375]
Length = 363
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/347 (64%), Positives = 278/347 (80%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPNVG+VAVPD RL VL+ +SKS+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNVGVVAVPDARLAVLTEISKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE++DI+HV+G +DP
Sbjct: 62 NTVPARIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVDGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D ++INLEL +DL+QIE+RME+++K +D +++ AE A LEKIQ L +GK A
Sbjct: 122 LRDAEIINLELALADLEQIERRMERVRKQARRDPEAQ----AELAVLEKIQPVLAEGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L D E IK L LT KPIIY ANV+E +LA+ N V ++ LA+ + VT
Sbjct: 178 RLVELEDDEELLIKSLGFLTRKPIIYGANVSEDELAE--GNDWVEQIKTLAAKENAQVVT 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL ELP +ER+++L +LGV E GL +LIR+TY LLGLRTYFT+G +E++AWTI
Sbjct: 236 ISAQVEAELLELPEDERIDFLEALGVEEGGLKSLIRATYDLLGLRTYFTTGPQESRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM+APQAAGVIHSDFE+GFIRAET+AY V GS+ AA+EKGL+
Sbjct: 296 NAGMSAPQAAGVIHSDFERGFIRAETIAYKALVEHGSMNAAKEKGLL 342
>gi|354567155|ref|ZP_08986325.1| GTP-binding protein YchF [Fischerella sp. JSC-11]
gi|353543456|gb|EHC12914.1| GTP-binding protein YchF [Fischerella sp. JSC-11]
Length = 363
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/349 (67%), Positives = 278/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL+VL +SKS
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLGKISKSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D++ INLEL +DL QIE+R+E+ KK Q++ ++A E LEK+ AL +GK
Sbjct: 122 ARDIETINLELGLADLAQIERRIERTKK------QARTSKEAQFELTVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+L + E IK L LLT KPIIY ANV+E +LA N V +V +A+ +
Sbjct: 176 SVRQVSLTEEEAAVIKLLGLLTSKPIIYAANVSEDELAT--GNEFVEKVRQIAATENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL EL EER ++LASLGV E GL +LIR+TY+LLGLRTYFTSGEKET+AW
Sbjct: 234 VVVSAQVEAELIELSEEERADFLASLGVEEGGLKSLIRATYTLLGLRTYFTSGEKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+AGM APQAAGVIHSDFE+GFIRAETVAYDD VAAGS+AAA+EKGLV
Sbjct: 294 TIKAGMLAPQAAGVIHSDFERGFIRAETVAYDDLVAAGSMAAAKEKGLV 342
>gi|384252422|gb|EIE25898.1| hypothetical protein COCSUDRAFT_52611 [Coccomyxa subellipsoidea
C-169]
Length = 371
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/348 (64%), Positives = 266/348 (76%), Gaps = 1/348 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ENGKAQAANFPFCTIEPNVGIVAVPD RL LS +SK
Sbjct: 1 MSLKTGIVGLPNVGKSTLFNAICENGKAQAANFPFCTIEPNVGIVAVPDSRLETLSNISK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ VP SVEFVDIAGLVKGAS+GEGLGN+FL++IRE D++ QVVRCFED +++HV GKV
Sbjct: 61 SKAIVPTSVEFVDIAGLVKGASKGEGLGNQFLANIRECDALAQVVRCFEDENVIHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D DVIN EL +D+ QIEKR+++L+KG+AK + + EKAAL +I +AL
Sbjct: 121 DPVEDTDVINFELALADITQIEKRLQRLEKGRAKTKEEIASNEVEKAALSRIVEALDQNI 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
PAR+V L E ++ L LLTMKP+IY ANV ESDLAD G SN V + A+
Sbjct: 181 PARAVQLTADESVLVRGLQLLTMKPMIYAANVNESDLADQGSSNTFVQALRKKAAQENCD 240
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SAQVEAEL EL E EYL SLG SE GL +LIR+ Y LGL TYFT+G +ET+A
Sbjct: 241 VIIVSAQVEAELRELDPVEAAEYLESLGASEGGLASLIRTAYRQLGLLTYFTTGVQETRA 300
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR GMTAP+AAGVIHSDFE+GFI+AETV YDD V+AGSL A+E G
Sbjct: 301 WTIRKGMTAPEAAGVIHSDFERGFIKAETVGYDDLVSAGSLGQAKENG 348
>gi|186686385|ref|YP_001869581.1| GTP-dependent nucleic acid-binding protein EngD [Nostoc punctiforme
PCC 73102]
gi|186468837|gb|ACC84638.1| GTP-binding protein YchF [Nostoc punctiforme PCC 73102]
Length = 363
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 275/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLAKIASSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D+++IN+EL SDL QIE+R+++ +K +KD+Q E + LEK+ AL +GK
Sbjct: 122 ARDIEIINIELGLSDLAQIERRIDRTRKLARTSKDAQF------EVSVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+LN+ E + IK L LLT KPIIY ANV+E +LA N V V +A+ +
Sbjct: 176 SVRQVSLNEEETEIIKGLELLTYKPIIYAANVSEDELAT--GNHFVETVRQIAATENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++LASLGV E GL +LIR+TYSLLGLRTYFT G KET+AW
Sbjct: 234 VIVSAQVEAELVELPEEDKADFLASLGVEEGGLKSLIRATYSLLGLRTYFTCGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVTTGSMNAAKEKGLV 342
>gi|282901754|ref|ZP_06309669.1| GTP-binding protein, HSR1-related [Cylindrospermopsis raciborskii
CS-505]
gi|281193371|gb|EFA68353.1| GTP-binding protein, HSR1-related [Cylindrospermopsis raciborskii
CS-505]
Length = 400
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/354 (64%), Positives = 279/354 (78%), Gaps = 11/354 (3%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
K +M L+AGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VL+
Sbjct: 35 KFTM-LKAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDDRLNVLAK 93
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L+ S++ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV+
Sbjct: 94 LASSEQIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVS 153
Query: 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQA 229
G VDP D+D+INLEL SDL Q+E+R+E+ +K +KD+Q ++ L+K+ A
Sbjct: 154 GSVDPVRDIDIINLELGLSDLAQVERRIERSRKLARTSKDAQFEI------TVLDKLVAA 207
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +GK R V+L E IK L LLT KPIIY ANVAE DLA N V +V +A+
Sbjct: 208 LNEGKLVRQVSLTPEEAGVIKNLGLLTSKPIIYAANVAEDDLAT--GNDFVEKVRAVAAQ 265
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V +SAQVEAEL ELP ++ ++LASLGV E GL +LIR+TY+LLGLRTYFTSG K
Sbjct: 266 ENAQVVIVSAQVEAELVELPDADKFDFLASLGVQEGGLKSLIRATYALLGLRTYFTSGPK 325
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
ET+AWTI AGM+APQAAGVIHSDFE+GFIRAETVAYDD V GS+ AA+EKGLV
Sbjct: 326 ETRAWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYDDLVTHGSINAAKEKGLV 379
>gi|317970481|ref|ZP_07971871.1| GTP-binding protein YchF [Synechococcus sp. CB0205]
Length = 363
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/375 (61%), Positives = 279/375 (74%), Gaps = 13/375 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +A+AAN+PFCTIEPN G+VAVPDPRL LS LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAEAANYPFCTIEPNSGVVAVPDPRLQQLSDLSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ELIPTRVEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL Q+EKR E+LKK +A+ S+ ED ALE+IQ L G A
Sbjct: 122 ARDAEVINLELGLADLSQVEKRRERLKK-QARTSKEAQAED---EALERIQAVLEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV+L + E IK L LLT KPIIY NV+E DL+ N + EV LA +G V
Sbjct: 178 RSVSLTEEEAAMIKPLGLLTAKPIIYATNVSEDDLSR--GNAYCEEVAVLAEKEGAGTVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL ELP E+R E+L LGV E GL +LIR+TYSLLGLRTYFT+GEKET+AWTI
Sbjct: 236 ISAQVEAELIELPEEDRAEFLEGLGVEEGGLQSLIRATYSLLGLRTYFTTGEKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYK 416
+AGMTAPQAAGVIH+DFE+GFIRA+T+ Y + AGSL+ AR KG WL +
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTIGYKQLLEAGSLSEARNKG---WLRAE----GKE 348
Query: 417 YFHWNSYMLRYFFSL 431
Y ++ + F++
Sbjct: 349 YVVEEGDVMEFLFNV 363
>gi|443311670|ref|ZP_21041295.1| GTP-binding protein YchF [Synechocystis sp. PCC 7509]
gi|442778243|gb|ELR88511.1| GTP-binding protein YchF [Synechocystis sp. PCC 7509]
Length = 363
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 275/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVGI +VPD RL VL+ +SKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGIASVPDERLQVLADISKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQ EGLGNKFLSHIREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASQNEGLGNKFLSHIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED--AEKAALEKIQQALMDGK 234
D+++INLEL +DLDQIE++ ++ +K Q++ +D AE LEK+ AL GK
Sbjct: 122 ARDIEIINLELGLADLDQIERKCDRTRK------QARANKDAQAEVLVLEKLITALNAGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR V L++ E SIK L LLT KPIIY ANV+E +LA N V EV +A+ +
Sbjct: 176 PARQVNLDEEELASIKDLGLLTNKPIIYAANVSEEELAT--GNKWVEEVRKIAAQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP+E+R ++LASLGV E GL +LIR+TY LLGLRTYFT+G KET+AW
Sbjct: 234 VIVSAQVEAELVELPAEDRADFLASLGVEEGGLKSLIRATYELLGLRTYFTAGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM APQAAGVIHSDFE+GFIRAETVAY D VA S+ AA+EKGLV
Sbjct: 294 TIHAGMFAPQAAGVIHSDFERGFIRAETVAYKDLVANKSMGAAKEKGLV 342
>gi|298492272|ref|YP_003722449.1| GTP-binding protein YchF ['Nostoc azollae' 0708]
gi|298234190|gb|ADI65326.1| GTP-binding protein YchF ['Nostoc azollae' 0708]
Length = 363
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 274/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIV+VPD RL+VL+ ++ S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDDRLNVLARIATSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D+++INLEL SDL QIEKR+++ +K Q++ +DA E LEK+ AL +GK
Sbjct: 122 AQDIEIINLELGLSDLAQIEKRIDRTRK------QARTSKDAQFEITVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R VTLN+ E IK L LLT KPIIY ANV+E DL N V +V +AS +
Sbjct: 176 SVRQVTLNEEEAAIIKGLGLLTNKPIIYAANVSEDDLET--GNDFVEQVRQVASRESTQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY+LLGLRTYFT G +ET+AW
Sbjct: 234 VIVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYALLGLRTYFTCGPQETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY+D V GS+ A+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVTHGSMNGAKEKGLV 342
>gi|428771363|ref|YP_007163153.1| GTP-binding protein YchF [Cyanobacterium aponinum PCC 10605]
gi|428685642|gb|AFZ55109.1| GTP-binding protein YchF [Cyanobacterium aponinum PCC 10605]
Length = 363
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/347 (65%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA AANFPFCTIEPNVG+VAVPD RL VL+ LSKSQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKATAANFPFCTIEPNVGVVAVPDERLEVLAKLSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+DVINLEL +DL Q+EKR+E+ +K K+ ++ E LEKI L +GKPA
Sbjct: 122 LRDMDVINLELSLADLSQVEKRLERQRKQAKKEKEA----GEEVEILEKILPILNEGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L E+ IK L LLT KP+IY ANV++ DLA N VN+V A + V
Sbjct: 178 RLVELTQEEKAIIKPLGLLTAKPVIYAANVSDEDLAT--GNDWVNQVKQQAETENAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL EE+ E+L SLGVSE GL +LI++TY LLGLRTY T+GE ET+AWTI
Sbjct: 236 ISAQVESELVELSPEEKTEFLESLGVSEGGLQSLIQATYDLLGLRTYLTTGETETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGMTAPQAAGVIHSDFE+GFIRAETV+Y D V GS+ AA+EKGLV
Sbjct: 296 LAGMTAPQAAGVIHSDFERGFIRAETVSYQDLVDCGSMTAAKEKGLV 342
>gi|440682880|ref|YP_007157675.1| GTP-binding protein YchF [Anabaena cylindrica PCC 7122]
gi|428679999|gb|AFZ58765.1| GTP-binding protein YchF [Anabaena cylindrica PCC 7122]
Length = 363
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 275/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIV+VPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDDRLNVLAKIATSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D+++INLEL SDL QIE+R+++ +K +KD+Q ++ A LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLSDLFQIERRIDRTRKLARTSKDAQFEI------AVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+LN+ E + IK L LLT KPIIY ANV+E DLA N V V +A+ +
Sbjct: 176 SVRQVSLNEEEAEIIKGLGLLTNKPIIYAANVSEDDLAT--GNDFVERVQEVAAQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP ++ ++L SLGV E GL +LIR+TY+LLGLRTYFT G KET+AW
Sbjct: 234 VIVSAQVEAELVELPEADKADFLESLGVKEGGLKSLIRATYTLLGLRTYFTCGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY+D V GS+ AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVTHGSMNAAKEKGLV 342
>gi|86604757|ref|YP_473520.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
JA-3-3Ab]
gi|86553299|gb|ABC98257.1| GTP-binding protein YchF [Synechococcus sp. JA-3-3Ab]
Length = 363
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 270/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA+AANFPFCTIEPN+G VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKAEAANFPFCTIEPNIGRVAVPDERLQVLAKISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA +EFVDIAGLV GAS+GEGLGN+FLSHIR+VD+I+ VVRCF+D +IVHV G VDP
Sbjct: 62 AIVPAQIEFVDIAGLVAGASKGEGLGNQFLSHIRQVDAIVHVVRCFKDENIVHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+ VINLEL +DL QIE+R+E+++K D +++ E ALEK+Q AL +GKPA
Sbjct: 122 VRDMGVINLELALADLAQIERRLERVRKQAKSDKTAQV----ELQALEKLQAALDEGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L+ E SIK L LLT K +IY ANVAE++LA N V +V +A + V
Sbjct: 178 RLVPLSPEEEASIKGLGLLTRKKVIYAANVAETELAT--GNDWVEQVRQVAQAEGARVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL ELP ER YL SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 236 VSAQVEAELVELPPAERQAYLDSLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AG TAPQAAGVIHSDFE+GFIRAET+AY+D VAAGSL+AAREKGLV
Sbjct: 296 PAGATAPQAAGVIHSDFERGFIRAETIAYEDLVAAGSLSAAREKGLV 342
>gi|282897871|ref|ZP_06305866.1| GTP-binding protein, HSR1-related [Raphidiopsis brookii D9]
gi|281197015|gb|EFA71916.1| GTP-binding protein, HSR1-related [Raphidiopsis brookii D9]
Length = 400
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/352 (65%), Positives = 276/352 (78%), Gaps = 10/352 (2%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
S L+AGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIVAVPD RL+VL+ L+
Sbjct: 36 STMLKAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVAVPDDRLNVLAKLA 95
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S++ +PA VEFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV+G
Sbjct: 96 SSEQIIPARVEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVSGS 155
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALM 231
VDP D+D+INLEL SDL Q+E+R+E+ +K +KD+Q E L+K+ AL
Sbjct: 156 VDPVRDIDIINLELGLSDLAQVERRIERSRKLARTSKDAQF------EVTVLDKLVAALN 209
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK R V+L E IK L LLT KPIIY ANVAE DLA N V +V +A+
Sbjct: 210 EGKSVRQVSLTPEEAAVIKNLGLLTSKPIIYAANVAEDDLAT--GNDFVEKVRAVAAQEN 267
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SAQVEAEL ELP ++V++LASLGV E GL +LIR+TY+LLGLRTYFTSG KET
Sbjct: 268 AQVVIVSAQVEAELVELPDADKVDFLASLGVQEGGLKSLIRATYALLGLRTYFTSGPKET 327
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI AGM+APQAAGVIHSDFE+GFIRAETVAY+D V S+ AA+EKGLV
Sbjct: 328 RAWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYEDLVTHRSINAAKEKGLV 379
>gi|428206579|ref|YP_007090932.1| GTP-binding protein YchF [Chroococcidiopsis thermalis PCC 7203]
gi|428008500|gb|AFY87063.1| GTP-binding protein YchF [Chroococcidiopsis thermalis PCC 7203]
Length = 363
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/347 (64%), Positives = 271/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLKVLAEISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVEGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL QIE+R ++ +K +++L E L+K+ +AL GKPA
Sbjct: 122 VRDIEVINLELGLADLAQIERRSDRARKLARTSKEAQL----ELTVLDKLTEALNLGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V+L D E IK L LLT KP+IY ANV+E DL+ N V +V A+ ++ V
Sbjct: 178 RQVSLTDEEAVLIKGLGLLTAKPVIYAANVSEDDLST--GNQWVEKVRQFAASDKAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL E+P EER E+LA+LGV E GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 236 VSAQVESELVEIPEEERAEFLATLGVEEGGLKSLIRATYELLGLRTYFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFE+GFIRAETVAYDD VA GS+ A+EKGLV
Sbjct: 296 TAGMVAPQAAGVIHSDFERGFIRAETVAYDDLVANGSMNGAKEKGLV 342
>gi|427719911|ref|YP_007067905.1| GTP-binding protein YchF [Calothrix sp. PCC 7507]
gi|427352347|gb|AFY35071.1| GTP-binding protein YchF [Calothrix sp. PCC 7507]
Length = 363
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/349 (65%), Positives = 273/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLAKIASSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D+D+IN+EL SDL QIE+R+++ +K +KD+Q E LEK+ AL +GK
Sbjct: 122 ARDIDIINIELGLSDLFQIERRIDRTRKLARTSKDAQF------EVTILEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+L E + IK L LLT KPIIY ANV+E +LA N V +V +AS +
Sbjct: 176 SVRQVSLTAEETEIIKGLGLLTNKPIIYAANVSEDELAT--GNAFVEKVRQVASAENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++LASLGV E GL +LIR+TY+LLGLRTYFT G KET+AW
Sbjct: 234 VIVSAQVEAELVELPEEDKADFLASLGVQEGGLKSLIRATYALLGLRTYFTCGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAYD V GS+ AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYDALVTTGSMNAAKEKGLV 342
>gi|427739944|ref|YP_007059488.1| GTP-binding protein YchF [Rivularia sp. PCC 7116]
gi|427374985|gb|AFY58941.1| GTP-binding protein YchF [Rivularia sp. PCC 7116]
Length = 362
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/349 (63%), Positives = 278/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S ++
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISSAK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGAS+GEGLGN+FLS+IRE D+I+ VVRCFED+D++HV+G V P
Sbjct: 62 QIVPARVEFVDIAGLVKGASKGEGLGNQFLSNIRETDAIVHVVRCFEDDDVIHVSGTVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D++VINLELV +DL Q+E+RME+ +K Q++ +DA E + LEK+ L +GK
Sbjct: 122 ARDIEVINLELVLADLAQVERRMERTRK------QARANKDAQYEMSVLEKVAAELNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R + L++ E + IK L LL+ K IIY ANV+E DL+ N +V +V +A +
Sbjct: 176 SVRQIQLSEEEAELIKPLTLLSAKKIIYAANVSEDDLST--GNKYVEQVREIAVKEDAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVE+EL EL EER ++L SLGV E GL +LIR+TY LLGLRTYFTSGEKET+AW
Sbjct: 234 VIVSAQVESELIELSDEERADFLESLGVEEGGLKSLIRATYDLLGLRTYFTSGEKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI++GM+APQAAGVIHSDFEKGFIRAETV+Y+D VA+GSL++A+EKGLV
Sbjct: 294 TIKSGMSAPQAAGVIHSDFEKGFIRAETVSYEDLVASGSLSSAKEKGLV 342
>gi|218247856|ref|YP_002373227.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
8801]
gi|257060823|ref|YP_003138711.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
8802]
gi|218168334|gb|ACK67071.1| GTP-binding protein YchF [Cyanothece sp. PCC 8801]
gi|256590989|gb|ACV01876.1| GTP-binding protein YchF [Cyanothece sp. PCC 8802]
Length = 363
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/347 (63%), Positives = 274/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLQVLANLSKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+EKR+E+ + K ++ K + +AE ALEKI L +GK A
Sbjct: 122 VRDIEVINLELALADLSQVEKRLERAR----KQAKGKKEAEAEIPALEKILAYLNEGKAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V+LN+ E + IK L LLT KPIIY ANV+E DLA N V +V +A + + V
Sbjct: 178 RHVSLNEEEEELIKPLGLLTRKPIIYAANVSEDDLAT--GNDWVKQVEGVAHNENAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL E+ EE+ +YL SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 236 VSAQVESELVEISEEEKADYLESLGVKEGGLQSLIKATYELLGLRTYLTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIH+DFE+GFIRAETVAYDD VA ++ AA+EKGLV
Sbjct: 296 HAGMKAPQAAGVIHTDFERGFIRAETVAYDDLVACKTMVAAKEKGLV 342
>gi|443319257|ref|ZP_21048491.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 6406]
gi|442781084|gb|ELR91190.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 6406]
Length = 363
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/347 (64%), Positives = 270/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KAQAANFPFCTIEPNVGIVAVPDPRL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAQAANFPFCTIEPNVGIVAVPDPRLGVLAQISDSS 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCFE+ DI+HV G +DP
Sbjct: 62 EIVPARVEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFENEDIIHVAGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D ++INLEL SDL Q+EKR+++ +K KD + + AE A+EK+ AL +G+ A
Sbjct: 122 ARDAEIINLELALSDLAQLEKRLDRARKQAKKDKEIQ----AEVEAIEKLLPALNEGQSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R ++L E IK L LLT KP+IY ANV+E DLA N V +V +A+ Q+ V
Sbjct: 178 RQISLTLEEELLIKPLGLLTRKPVIYAANVSEDDLAT--GNAWVEKVRAIAATEQAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL +L EER ++L SLGV E GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 236 VSAQVEAELVDLSQEERTDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIH+DFE+GFIRAET+AY D V GS+ AA+EKGLV
Sbjct: 296 TAGMVAPQAAGVIHTDFERGFIRAETIAYSDLVTFGSMGAAKEKGLV 342
>gi|254430116|ref|ZP_05043819.1| GTP-binding protein YchF [Cyanobium sp. PCC 7001]
gi|197624569|gb|EDY37128.1| GTP-binding protein YchF [Cyanobium sp. PCC 7001]
Length = 363
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/351 (63%), Positives = 271/351 (77%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +A+AAN+PFCTIEPN G+VAVPDPRL L+ +S+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAEAANYPFCTIEPNSGVVAVPDPRLQQLATISRSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCF+D+D++HV G VDP
Sbjct: 62 EIIPTRVEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFDDDDVIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL Q+EKR E+LKK + + S+ +ED LE+IQ L G A
Sbjct: 122 VRDAEVINLELGLADLGQVEKRRERLKK-QVRTSKEAQQED---GVLERIQTVLEAGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R+V L ER ++ L LLT KPIIY +NV+E DLA G N HV V LA+ + V
Sbjct: 178 RTVPLTAEERSLVRPLGLLTAKPIIYASNVSEDDLA--GGNAHVEAVQALAAQEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL ELP E+R E+L LGVSE GL +LIR+TY+LLGLRTYFT+GEKET+AWTI
Sbjct: 236 ISAQVEAELIELPEEDRAEFLEGLGVSEGGLQSLIRATYALLGLRTYFTTGEKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
AGMTAPQAAGVIH+DFE+GFIRA+T+ + V AGSLA AR +G WL
Sbjct: 296 TAGMTAPQAAGVIHTDFERGFIRAQTIGHQQLVEAGSLAEARNRG---WLR 343
>gi|86610344|ref|YP_479106.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558886|gb|ABD03843.1| GTP-binding protein YchF [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 363
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/347 (65%), Positives = 268/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA+AANFPFCTIEPNVG VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKAEAANFPFCTIEPNVGRVAVPDERLQVLAKISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P+ +EFVDIAGLV GAS+GEGLGN+FLSHIR+VD+++ VVRCF+D +IVHV G VDP
Sbjct: 62 EIIPSQIEFVDIAGLVAGASKGEGLGNQFLSHIRQVDAVVHVVRCFQDENIVHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+ VINLEL +DL QIE+R+E+++K D ++L E ALE++Q AL +GKPA
Sbjct: 122 LRDIGVINLELALADLAQIERRIERVRKQAKSDKTAQL----ELQALEQLQAALDEGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L+ E IK L LLT K +IY ANVAE+DLA N V +V A +G V
Sbjct: 178 RLVPLSPEEEQLIKGLGLLTRKKVIYAANVAETDLAS--GNAWVEQVRQFAEAEGAGVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL ELP +ER YL SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 236 VSAQVEAELVELPPDERQAYLDSLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G TAPQAAGVIHSDFE+GFIRAETVAY D VAAGSL AA+EKGL+
Sbjct: 296 PVGATAPQAAGVIHSDFERGFIRAETVAYADLVAAGSLNAAKEKGLL 342
>gi|428203386|ref|YP_007081975.1| GTP-binding protein YchF [Pleurocapsa sp. PCC 7327]
gi|427980818|gb|AFY78418.1| GTP-binding protein YchF [Pleurocapsa sp. PCC 7327]
Length = 363
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/349 (63%), Positives = 278/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ LS S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLQVLAKLSHSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D++VINLEL +DL Q+E+R+++ +K +K++Q +L+ ALEK+ AL +GK
Sbjct: 122 VRDIEVINLELALADLAQVERRIDRTRKQARNSKEAQIELR------ALEKLSAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +A+ S
Sbjct: 176 SARQVDLSEEEAEAIKSLGLLTGKPIIYAANVSEEDLAQ--GNEWVEKVKQVAAAEGSKV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL +L ER +YLA+LGV E GL +LI++TY LLGLRTY T+G +E++AW
Sbjct: 234 VVVSAQVEAELVDLSEGERADYLAALGVEEGGLKSLIKATYELLGLRTYLTTGPQESRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIRAGM APQAAGVIHSDFEK FIRAET++Y+D VAAGS+AAAREKGLV
Sbjct: 294 TIRAGMKAPQAAGVIHSDFEKKFIRAETISYEDLVAAGSMAAAREKGLV 342
>gi|428776929|ref|YP_007168716.1| GTP-binding protein YchF [Halothece sp. PCC 7418]
gi|428691208|gb|AFZ44502.1| GTP-binding protein YchF [Halothece sp. PCC 7418]
Length = 363
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/349 (64%), Positives = 269/349 (77%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL+ +S SQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLEVLAKISNSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCFE++DIVHV+G VDP
Sbjct: 62 RIVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFENDDIVHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D++VINLEL +DL QIEKR+ + +K K KD+Q +L+ LEK+ A+ +GK
Sbjct: 122 VRDIEVINLELALADLAQIEKRIARTRKEAKKNKDAQVELE------LLEKLAAAINEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR V L + E D IK L LLT KPIIY NV+E DLA N V +V LA+ S
Sbjct: 176 TARQVELTEDEEDLIKPLGLLTKKPIIYATNVSEDDLAT--GNQAVEQVRELAAKENSSV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISAQVE+EL EL EE+ ++L SLGV E GL +LIR+TY LLGLRTY T+GE ET+AW
Sbjct: 234 VVISAQVESELIELSDEEKADFLESLGVEEGGLQSLIRATYDLLGLRTYLTTGETETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIRAGM APQAAGVIHSDFE+GFIRAET++Y+ S AAAREKGL+
Sbjct: 294 TIRAGMKAPQAAGVIHSDFERGFIRAETISYEKLAEIQSYAAAREKGLI 342
>gi|307154902|ref|YP_003890286.1| GTP-binding protein YchF [Cyanothece sp. PCC 7822]
gi|306985130|gb|ADN17011.1| GTP-binding protein YchF [Cyanothece sp. PCC 7822]
Length = 363
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/349 (63%), Positives = 274/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ LS+S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKLSQSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D++VINLEL +DL Q+EKR+++++K +KD+Q++L A LEK+ L +G+
Sbjct: 122 LRDIEVINLELALADLAQVEKRIDRVRKQAKTSKDAQAEL------AVLEKVIAVLNEGQ 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR L + E D IK L LL+ KPIIY ANV+E DLA N V +V N+A +
Sbjct: 176 SARQAQLTEEEADLIKTLGLLSAKPIIYAANVSEDDLA--SGNEWVEQVRNIAQTEAAEV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVE+EL +L EER ++L SLGV E GL +LI++TY LLGLRTY T+G ET+AW
Sbjct: 234 VVVSAQVESELVDLSEEERKDFLESLGVEEGGLKSLIKATYHLLGLRTYLTTGPTETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIR+GM APQAAGVIHSDFE+GFIRAETVAY D VA G++ AA+EKGLV
Sbjct: 294 TIRSGMKAPQAAGVIHSDFERGFIRAETVAYQDLVACGTMNAAKEKGLV 342
>gi|434403132|ref|YP_007146017.1| GTP-binding protein YchF [Cylindrospermum stagnale PCC 7417]
gi|428257387|gb|AFZ23337.1| GTP-binding protein YchF [Cylindrospermum stagnale PCC 7417]
Length = 363
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/349 (63%), Positives = 272/349 (77%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLDVLAKIASSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ + A VEFVDIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QILAARVEFVDIAGLVKGASKGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D+++IN+EL +DL QIE+R+++ +K Q++ +DA E LEK+ AL +GK
Sbjct: 122 ARDIEIINIELGLADLSQIERRIDRTRK------QARTSKDAQFEITVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+L + E + IK L LLT KPIIY ANV+E +LA N V +V +AS +
Sbjct: 176 SVRQVSLTEEETEIIKGLELLTYKPIIYAANVSEEELAT--GNDFVEQVRLIASQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TYSLLGLRTYFT G KET+AW
Sbjct: 234 VIVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYSLLGLRTYFTCGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYHDLVTTGSMNAAKEKGLV 342
>gi|75910821|ref|YP_325117.1| GTP-dependent nucleic acid-binding protein EngD [Anabaena
variabilis ATCC 29413]
gi|75704546|gb|ABA24222.1| GTP-binding protein, HSR1-related protein [Anabaena variabilis ATCC
29413]
Length = 363
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/349 (65%), Positives = 277/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSQISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D+++I++EL SDL QIE+R+E+ +K Q++ +DA E LEK+ AL +GK
Sbjct: 122 ARDIEIISIELGLSDLAQIERRIERTRK------QARTSKDAQFEITVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R ++L + E + IK L LLT KPIIY ANV+E +LA N V V +A+ +
Sbjct: 176 SVRQISLTEEEAEIIKGLGLLTNKPIIYAANVSEEELAT--GNEFVERVRQVAAQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY+LLGLRTYFTSG+KET+AW
Sbjct: 234 VVVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYALLGLRTYFTSGQKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY+D VA GSL AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSLIAAKEKGLV 342
>gi|376006741|ref|ZP_09783956.1| translation-associated GTPase [Arthrospira sp. PCC 8005]
gi|375324805|emb|CCE19709.1| translation-associated GTPase [Arthrospira sp. PCC 8005]
Length = 363
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/347 (63%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL + DL Q+E+R+E+ +K +++L E ALEKI L DGK A
Sbjct: 122 VRDIEIINLELAYRDLSQVERRIERTRKQARTSKEAQL----ELGALEKIAAVLNDGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +AS + V
Sbjct: 178 RLVDLSEEEAEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIASQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E+ E+L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 ISAQVESELVELSDSEKQEFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA++KGLV
Sbjct: 296 HEGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNAAKDKGLV 342
>gi|414079340|ref|YP_007000764.1| GTP-binding protein YchF [Anabaena sp. 90]
gi|413972619|gb|AFW96707.1| GTP-binding protein YchF [Anabaena sp. 90]
Length = 363
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/349 (64%), Positives = 273/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+V+VPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGMVSVPDDRLNVLAKIATSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D+++INLEL SDL QIEKR+++ +K +KD+Q +++ LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLSDLFQIEKRIDRSRKLARTSKDAQVEVE------ILEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V LN E + IK L LLT KPIIY ANV+E DLA N V V +A+ +
Sbjct: 176 SVRQVGLNAEESEIIKGLGLLTNKPIIYAANVSEEDLAT--GNDFVERVREVAAVENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP ++ ++L SLGV E GL +LIR+TY+LLGLRTYFT G KET+AW
Sbjct: 234 VIVSAQVEAELVELPEADKADFLESLGVKEGGLKSLIRATYTLLGLRTYFTCGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY D V GS++AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYHDLVTHGSMSAAKEKGLV 342
>gi|17228218|ref|NP_484766.1| GTP-dependent nucleic acid-binding protein EngD [Nostoc sp. PCC
7120]
gi|17130068|dbj|BAB72680.1| all0723 [Nostoc sp. PCC 7120]
Length = 363
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/349 (65%), Positives = 276/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSQISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D+++I++EL SDL QIE+R+E+ +K Q++ +DA E LEK+ AL +GK
Sbjct: 122 ARDIEIISIELGLSDLAQIERRIERTRK------QARTSKDAQFEVTVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R ++L + E + IK L LLT KPIIY ANV+E +LA N V V +A+ +
Sbjct: 176 SVRQISLTEEEAEIIKGLGLLTNKPIIYAANVSEEELAT--GNEFVERVRQVAAQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY LLGLRTYFTSG KET+AW
Sbjct: 234 VVVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY+D VA GSL+AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSLSAAKEKGLV 342
>gi|220909626|ref|YP_002484937.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
7425]
gi|219866237|gb|ACL46576.1| GTP-binding protein YchF [Cyanothece sp. PCC 7425]
Length = 363
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/347 (63%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL +L+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLQILANISSSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGAS+GEGLGNKFL++IRE D+I+QVVRCFED+DI+HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVKGASEGEGLGNKFLANIRETDAIVQVVRCFEDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+ VINLEL +DL+QI +R+E+ +K +++L E ALEK+ AL +GK A
Sbjct: 122 VRDMSVINLELALADLEQIGRRIERTRKTARTSKEAQL----ELEALEKLSAALNEGKTA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V+L++ E ++K L LLT KP+IY ANVAE DLA N V +V +A+ + V
Sbjct: 178 RQVSLSEEEEQAVKFLGLLTRKPVIYAANVAEDDLAT--GNAWVEQVRQVAATEGAEVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL EL +R ++LA+LGVSE GL +LIR+TY LLGLRT+FTSG KET+AWTI
Sbjct: 236 VSAQVEAELVELSESDRQDFLATLGVSEGGLKSLIRATYDLLGLRTFFTSGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G APQAAG IHSDFE+GFIRAETVAY D VA GS+ A+EKGLV
Sbjct: 296 LRGDKAPQAAGTIHSDFERGFIRAETVAYADLVATGSMTTAKEKGLV 342
>gi|411120865|ref|ZP_11393237.1| GTP-binding protein YchF [Oscillatoriales cyanobacterium JSC-12]
gi|410709534|gb|EKQ67049.1| GTP-binding protein YchF [Oscillatoriales cyanobacterium JSC-12]
Length = 363
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/347 (65%), Positives = 276/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNVGVVAVPDERLSVLAKISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCFE++DI+HV G V+P
Sbjct: 62 EIIPARVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVAGSVEP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+EKR+++ KK + + +L+ D ALEK+ L +GKPA
Sbjct: 122 IRDIEVINLELALADLGQVEKRLDRAKKQARGNKELQLEVD----ALEKLLAVLNEGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L + E ++K L +LT KPIIY ANV+E DLA N V +V LA+ + V
Sbjct: 178 RQVNLTEEEEMAVKALGMLTRKPIIYAANVSEDDLAT--GNHWVEQVRELAAQENAQVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL ELP+EER ++L SLGVSE GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 236 VSAQVESELIELPAEERADFLESLGVSEGGLQSLIRATYELLGLRTYFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIH+DFE+GFIRAETVAY+D VAAGS+ AA+EKGLV
Sbjct: 296 HAGMVAPQAAGVIHTDFERGFIRAETVAYNDLVAAGSMNAAKEKGLV 342
>gi|209524577|ref|ZP_03273125.1| GTP-binding protein YchF [Arthrospira maxima CS-328]
gi|423064332|ref|ZP_17053122.1| GTP-binding protein YchF [Arthrospira platensis C1]
gi|209495035|gb|EDZ95342.1| GTP-binding protein YchF [Arthrospira maxima CS-328]
gi|406713575|gb|EKD08743.1| GTP-binding protein YchF [Arthrospira platensis C1]
Length = 363
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/347 (63%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDQRLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL + DL Q+E+R+E+ +K +++L E ALEKI L +GK A
Sbjct: 122 VRDIEIINLELAYRDLSQVERRIERTRKQARTSKEAQL----ELGALEKIAAVLNEGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +AS + V
Sbjct: 178 RLVDLSEEEAEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIASQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E+ ++L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 ISAQVESELVELSDSEKQDFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA++KGLV
Sbjct: 296 HEGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNAAKDKGLV 342
>gi|159471011|ref|XP_001693650.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283153|gb|EDP08904.1| predicted protein [Chlamydomonas reinhardtii]
Length = 415
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 283/376 (75%), Gaps = 11/376 (2%)
Query: 32 LIGVLGITTTSSRRRFSSASK-----ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN 86
L+ + IT T S R + S+ +L+AGIVGLPNVGKSTLFNA+VENGKAQAAN
Sbjct: 22 LLHRVSITATPSLVRPGAGSRGFRTTTVAALQAGIVGLPNVGKSTLFNALVENGKAQAAN 81
Query: 87 FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFL 146
FPFCTIEPNVGIV V DPRL LS +S S+ +PA+VEFVDIAGLVKGAS+GEG+GN+FL
Sbjct: 82 FPFCTIEPNVGIVQVEDPRLAQLSAISGSKDLIPATVEFVDIAGLVKGASKGEGMGNQFL 141
Query: 147 SHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206
++IR D+I QVVRCFED+DIVH VDP D+DVINLEL +DL+ I KR E+L+KGK
Sbjct: 142 TNIRNTDAICQVVRCFEDDDIVH----VDPLDDIDVINLELALADLEVISKRQERLRKGK 197
Query: 207 AKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANV 266
Q++ +++ E +AL+KIQ A+ GK AR+ L E ++K L LLT+KP+IY ANV
Sbjct: 198 KAADQAE-RDELELSALDKIQAAIEAGKGARTAQLTKDEAVAVKGLGLLTLKPLIYAANV 256
Query: 267 AESDLADPGS-NPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSES 325
E DLAD G+ N HV + A + V +SA+VEAEL ELP EE E+LASLGV++
Sbjct: 257 MEDDLADQGANNTHVQALRKRAVEEGVQVVVVSAKVEAELNELPKEEAKEWLASLGVTDG 316
Query: 326 GLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAY 385
GL +L+R+TYS LGL+TYFT+GEKET+AWTIR GMTAPQAAGVIH+DFEKGFIRAET+A+
Sbjct: 317 GLSSLVRATYSTLGLQTYFTTGEKETRAWTIRKGMTAPQAAGVIHTDFEKGFIRAETIAF 376
Query: 386 DDFVAAGSLAAAREKG 401
+DFV + ++E G
Sbjct: 377 NDFVKNKGYSGSKEAG 392
>gi|254424345|ref|ZP_05038063.1| GTP-binding protein YchF [Synechococcus sp. PCC 7335]
gi|196191834|gb|EDX86798.1| GTP-binding protein YchF [Synechococcus sp. PCC 7335]
Length = 363
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/347 (64%), Positives = 273/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KAQAANFPFCTIEPNVG+VAVPD RL L+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAQAANFPFCTIEPNVGVVAVPDERLGTLADISSSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ PA VEFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCFE +DI+HV+G + P
Sbjct: 62 EVTPARVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIIHVVRCFESDDIIHVSGSIGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL SDL QIEKRME+++K + +++ AE LEK+Q L +GK A
Sbjct: 122 LRDIEVINLELALSDLSQIEKRMERIRKQARNNKEAQ----AELDILEKLQPVLDEGKAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R+V L+D E IK L LLT KP+IY ANV+E DLA N V +V + A D + V
Sbjct: 178 RTVELDDDESLIIKPLGLLTRKPVIYAANVSEDDLAT--GNEWVEQVRSQAEDEDAQVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL E+P +ER ++L +LGV E GL +LIR+TY LLGLRTYFT+G +ET+AWTI
Sbjct: 236 VSAQVEAELLEIPEDERADFLEALGVEEGGLQSLIRATYDLLGLRTYFTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AGM APQAAGVIH+DFE+GFIRAETV Y+D V +GS+ AA+EKGLV
Sbjct: 296 KAGMLAPQAAGVIHTDFERGFIRAETVGYEDLVTSGSMTAAKEKGLV 342
>gi|16330542|ref|NP_441270.1| GTP-dependent nucleic acid-binding protein EngD [Synechocystis sp.
PCC 6803]
gi|383322283|ref|YP_005383136.1| hypothetical protein SYNGTI_1374 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325452|ref|YP_005386305.1| hypothetical protein SYNPCCP_1373 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491336|ref|YP_005409012.1| hypothetical protein SYNPCCN_1373 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436603|ref|YP_005651327.1| hypothetical protein SYNGTS_1374 [Synechocystis sp. PCC 6803]
gi|451814700|ref|YP_007451152.1| hypothetical protein MYO_113860 [Synechocystis sp. PCC 6803]
gi|1653033|dbj|BAA17950.1| sll0245 [Synechocystis sp. PCC 6803]
gi|339273635|dbj|BAK50122.1| hypothetical protein SYNGTS_1374 [Synechocystis sp. PCC 6803]
gi|359271602|dbj|BAL29121.1| hypothetical protein SYNGTI_1374 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274772|dbj|BAL32290.1| hypothetical protein SYNPCCN_1373 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359277942|dbj|BAL35459.1| hypothetical protein SYNPCCP_1373 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958465|dbj|BAM51705.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
BEST7613]
gi|451780669|gb|AGF51638.1| hypothetical protein MYO_113860 [Synechocystis sp. PCC 6803]
Length = 363
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/347 (63%), Positives = 277/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL L+ +S+S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDDRLGKLAEISQSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV GAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KVVPTRMEFVDIAGLVAGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV+VI+LELV +DL Q+EKR+E+ +K +A+ ++ L+ E A LE++ AL +G PA
Sbjct: 122 VRDVEVIDLELVLADLAQVEKRLERSRK-QARGNKDLLE---EVAILERLVAALNEGIPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L E++ IK L LLT+KPIIY NV E DLA G N V +V +A+ ++ V
Sbjct: 178 RRVGLTAEEQELIKSLGLLTLKPIIYATNVTEDDLA--GGNDWVEQVKAIAAKDEAKVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL ELP EER ++LASLGV+E GL +LIR+TY LLGLRTY T+G +ET+AWTI
Sbjct: 236 ISAQVESELVELPEEERQDFLASLGVTEGGLKSLIRATYELLGLRTYLTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+GM APQAAGVIH+DFE+GFIRAETVAY+D ++ GS+ A+EKGLV
Sbjct: 296 ISGMKAPQAAGVIHTDFERGFIRAETVAYEDLISCGSMQGAKEKGLV 342
>gi|428226882|ref|YP_007110979.1| GTP-binding protein YchF [Geitlerinema sp. PCC 7407]
gi|427986783|gb|AFY67927.1| GTP-binding protein YchF [Geitlerinema sp. PCC 7407]
Length = 364
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/348 (63%), Positives = 270/348 (77%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLAVLAKISASE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+E+R+++++ K ++S + E LEKI L +GK A
Sbjct: 122 VRDIEVINLELALADLSQVERRIDRIR----KQARSSKEAQTELTILEKIAAVLNEGKAA 177
Query: 237 R-SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
R + E I+ L LLT KPIIY ANVAE DLA N V +V +A + V
Sbjct: 178 RHVELHPEEEEPLIRALGLLTRKPIIYAANVAEDDLAS--GNEWVEQVRAIAGQENAQVV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL E+P EER ++L SLGVSE GL +LIR+TY LLGLRTYFT+G KET+AWT
Sbjct: 236 IVSAQVESELVEIPIEERADFLESLGVSEGGLQSLIRATYELLGLRTYFTTGPKETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGMTAPQAAGVIH+DFE+GFIRAETVAY D V++G++A A+EKGLV
Sbjct: 296 IHAGMTAPQAAGVIHTDFERGFIRAETVAYSDLVSSGAMAGAKEKGLV 343
>gi|254413674|ref|ZP_05027444.1| GTP-binding protein YchF [Coleofasciculus chthonoplastes PCC 7420]
gi|196179781|gb|EDX74775.1| GTP-binding protein YchF [Coleofasciculus chthonoplastes PCC 7420]
Length = 363
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 271/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDERLSVLAKISTSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D +I+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDENIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+DVINLEL +DL Q+E+RME+ +K +++L E ALEK+ L +GK A
Sbjct: 122 VRDIDVINLELALADLAQVERRMERTRKQARTSKEAQL----ELEALEKLSAGLNEGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R+++L + E + +K L LL+ KPIIY ANV+E DLA N V +V +A+ + V
Sbjct: 178 RNISLTEDEAEVVKPLGLLSAKPIIYAANVSEDDLAS--GNEWVEQVRQVATAETAEVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL ELP +ER ++L SLGV E GL +LIR+TY+LLGLRT+ T+G KET+AWTI
Sbjct: 236 VSAQVESELVELPEDERGDFLESLGVEEGGLKSLIRATYNLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAG IH+DFE+GFIRAETV YDD V +GS+ AA++KGLV
Sbjct: 296 IAGMKAPQAAGTIHTDFERGFIRAETVGYDDLVTSGSMNAAKDKGLV 342
>gi|78779617|ref|YP_397729.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9312]
gi|78713116|gb|ABB50293.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 363
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/347 (61%), Positives = 271/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGDLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFEDND++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIIHVVRCFEDNDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + + S+ KED A LEKI++ L G
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAKED---ALLEKIEEELHKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++L++ E IKQL LT KPIIY N+ E+DLA+ N ++V + A + +
Sbjct: 178 RSISLSEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSSKVQSFAGSENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELEPEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLL 342
>gi|119487016|ref|ZP_01620888.1| hypothetical protein L8106_18906 [Lyngbya sp. PCC 8106]
gi|119455945|gb|EAW37079.1| hypothetical protein L8106_18906 [Lyngbya sp. PCC 8106]
Length = 363
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/347 (61%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKATAANFPFCTIEPNVGVVAVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IR+VD+I+ VVRCFE++DI+HV+G +DP
Sbjct: 62 QIIPTRIEFVDIAGLVKGASQGEGLGNKFLANIRQVDAIIHVVRCFENDDIIHVSGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL QIE+R+++++K +++L E ALEK+ L +GK A
Sbjct: 122 VRDIEIINLELGLADLSQIERRIDRVRKLARTSKEAQL----ELGALEKLTAVLNEGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R L + E +++K L LLT KPIIY NV+E DLA N V +V +A+ + V
Sbjct: 178 RQADLTEEELEAVKVLELLTQKPIIYATNVSEEDLAT--GNDWVEKVREVATQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL ELP EER ++L SLGV E GL +LI++TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 ISAQVESELVELPPEERADFLESLGVKEGGLKSLIKATYQLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GM APQAAGVIH+DFE+GFIRAETVAY D V+ GS+ A+EKGLV
Sbjct: 296 QVGMLAPQAAGVIHTDFERGFIRAETVAYQDLVSTGSMNGAKEKGLV 342
>gi|291565998|dbj|BAI88270.1| probable GTP-binding protein [Arthrospira platensis NIES-39]
Length = 363
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 268/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCF+++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q+E+R+E+ +K +++L E ALEKI L +GK A
Sbjct: 122 VRDIEIINLELALADLSQVERRIERTRKQARTSKEAQL----ELGALEKIAAVLNEGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +AS + V
Sbjct: 178 RLVDLSEEETEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIASQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E+ ++L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 ISAQVESELVELSEAEKQDFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ A++KGLV
Sbjct: 296 HEGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNGAKDKGLV 342
>gi|22299130|ref|NP_682377.1| GTP-dependent nucleic acid-binding protein EngD
[Thermosynechococcus elongatus BP-1]
gi|22295312|dbj|BAC09139.1| tll1587 [Thermosynechococcus elongatus BP-1]
Length = 363
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/347 (63%), Positives = 266/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL+ +S+S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLEVLAKISQSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED+DIVHV G+V+P
Sbjct: 62 QIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDDIVHVAGRVNP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+ VINLEL +DL QIEKR+E+ +K ++++ E ALEK+ L +G+PA
Sbjct: 122 VEDIAVINLELALADLAQIEKRIERTRKAARSQKEAQI----ELTALEKLLGVLNEGQPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R L + E +I+ L LLT KP+IY ANVAE DLA N V +A + V
Sbjct: 178 RLCQLTEEEEAAIRFLGLLTRKPVIYAANVAEEDLAT--GNEWTAAVQEIAKQEGAEVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL +LP +R EYLASLGV E GL +LIRSTY LLGL+T+FT+G KET+AWTI
Sbjct: 236 VSAQVEAELVDLPEGDRAEYLASLGVREGGLRSLIRSTYKLLGLQTFFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AG APQAAGVIHSDFE+GFIRAETV+YDD VA S+ A+EKGLV
Sbjct: 296 PAGAKAPQAAGVIHSDFERGFIRAETVSYDDLVACQSMTVAKEKGLV 342
>gi|157413677|ref|YP_001484543.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9215]
gi|157388252|gb|ABV50957.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9215]
Length = 363
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 271/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLKELGDLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + + S+ KED LEKI++ L G
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAKED---TLLEKIEEKLQKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++L++ E IKQL LT KPIIY N+ E+DLA+ N ++V + AS + +
Sbjct: 178 RSISLSEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSSKVQSFASSENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELEPEDKKDYLMGLGVKEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLL 342
>gi|443323940|ref|ZP_21052908.1| putative GTPase, probable translation factor [Xenococcus sp. PCC
7305]
gi|442796273|gb|ELS05575.1| putative GTPase, probable translation factor [Xenococcus sp. PCC
7305]
Length = 363
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/349 (62%), Positives = 267/349 (76%), Gaps = 6/349 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N +A AANFPFCTIEPNVG+V+VPD RL VL+ +S SQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAQADAANFPFCTIEPNVGVVSVPDERLEVLAKISNSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL QIEKR+++++K K+ ++ AE LEK+ AL DGK
Sbjct: 122 VRDIEVINLELSLADLSQIEKRLQRVRKQAKKEKTAQ----AELDILEKLSVALNDGKST 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V LN E IK L LLT KPIIY NVA+ DLA N V EV A + + V
Sbjct: 178 RQVELNKDEEAIIKPLGLLTRKPIIYATNVADDDLA--SGNKWVEEVKEFAINESALVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EE+ ++L SLGV+E GL +LI++TY LLGLRTY T+GE E++AWTI
Sbjct: 236 VSAQVESELVELAEEEKQDFLESLGVTEGGLKSLIKATYELLGLRTYLTTGETESRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSW 405
AGM APQAAGVIH+DFEK FI+AET+ Y+DFV +GS A+EKGL+ +
Sbjct: 296 TAGMKAPQAAGVIHTDFEKKFIKAETIGYEDFVTSGSKGTAKEKGLIRF 344
>gi|67923117|ref|ZP_00516607.1| Conserved hypothetical protein 92:GTP-binding [Crocosphaera
watsonii WH 8501]
gi|67855015|gb|EAM50284.1| Conserved hypothetical protein 92:GTP-binding [Crocosphaera
watsonii WH 8501]
Length = 363
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+SQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLAVLAELSQSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRMEFVDIAGLVQGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q EKR+E+++ K + K + E ALEKI AL +G A
Sbjct: 122 ARDIEVINLELALADLTQTEKRLERVR----KQVKGKKEGQEEIPALEKILAALNEGMGA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L + E D IK L LLT KPIIY ANV+E DLA N V V +A+ ++ V
Sbjct: 178 RHVELTEEEEDLIKSLGLLTRKPIIYAANVSEDDLAT--GNEWVEAVRKIATADKAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL E+P EE+ +YL +LGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 236 VSAQVESELVEIPEEEKADYLEALGVKEGGLQSLIQATYELLGLRTYLTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIH+DFEKGFIRAETV+Y+D VA ++ A+EKGLV
Sbjct: 296 LAGMKAPQAAGVIHTDFEKGFIRAETVSYEDLVACKTMTVAKEKGLV 342
>gi|302831940|ref|XP_002947535.1| hypothetical protein VOLCADRAFT_57264 [Volvox carteri f.
nagariensis]
gi|300267399|gb|EFJ51583.1| hypothetical protein VOLCADRAFT_57264 [Volvox carteri f.
nagariensis]
Length = 366
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/346 (65%), Positives = 273/346 (78%), Gaps = 4/346 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTIEPNVGIV V DPRL LSG+S S+
Sbjct: 1 LQAGIVGLPNVGKSTLFNALVENGKAQAANFPFCTIEPNVGIVQVEDPRLKELSGISGSK 60
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA+VEFVDIAGLVKGAS+GEG+GN+FL++IR D+I QVVRCFED+DI+HV GKVDP
Sbjct: 61 EIIPATVEFVDIAGLVKGASKGEGMGNQFLTNIRNTDAICQVVRCFEDDDIIHVAGKVDP 120
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+DVINLEL +DL IEKR+E+LKKGK Q++ +++ E AAL KIQ A+ GK A
Sbjct: 121 LDDIDVINLELALADLGVIEKRVERLKKGKKSGDQAE-RDELELAALAKIQAAIEAGKGA 179
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNP-HVNEVMNLASDLQSGRV 295
R+ L E ++K L LLT+KP+IY ANV E DLAD G+N H V A++ V
Sbjct: 180 RTAPLTRDEAAAVKGLGLLTLKPLIYAANVVEDDLADQGANNRHALRVR--AAEEGVSVV 237
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SA+VEAEL ELP EE E+L SLGV + GL +L+R+TYS LGL+TYFT+GEKET+AWT
Sbjct: 238 VVSAKVEAELNELPKEEAREWLESLGVQDGGLSSLVRATYSTLGLQTYFTTGEKETRAWT 297
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
IR GMTAPQAAGVIH+DFEKGFIRAET+AY+D+V A+E G
Sbjct: 298 IRKGMTAPQAAGVIHTDFEKGFIRAETIAYNDYVKYQGYTGAKEAG 343
>gi|409991137|ref|ZP_11274426.1| GTP-binding protein YchF [Arthrospira platensis str. Paraca]
gi|409938003|gb|EKN79378.1| GTP-binding protein YchF [Arthrospira platensis str. Paraca]
Length = 363
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/347 (62%), Positives = 267/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCF+++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q+E+R+E+ +K +++L E ALEKI L +GK A
Sbjct: 122 VRDIEIINLELALADLSQVERRIERTRKQARTSKEAQL----ELGALEKIAAVLNEGKSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +A + V
Sbjct: 178 RLVDLSEEETEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIACQENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E+ ++L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 ISAQVESELVELSEAEKQDFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ A++KGLV
Sbjct: 296 HEGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNGAKDKGLV 342
>gi|416395386|ref|ZP_11686327.1| GTP-binding and nucleic acid-binding protein YchF [Crocosphaera
watsonii WH 0003]
gi|357263120|gb|EHJ12166.1| GTP-binding and nucleic acid-binding protein YchF [Crocosphaera
watsonii WH 0003]
Length = 363
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+SQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLAVLAELSQSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRMEFVDIAGLVQGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q EKR+E+++ K + K + E ALEKI AL +G A
Sbjct: 122 ARDIEVINLELALADLAQTEKRLERVR----KQVKGKKEGQEEIPALEKILAALNEGMGA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L + E D IK L LLT KPIIY ANV+E DLA N V V +A+ ++ V
Sbjct: 178 RHVELTEEEEDLIKSLGLLTRKPIIYAANVSEDDLAT--GNEWVEAVRKIATADKAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL E+P EE+ +YL +LGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 236 VSAQVESELVEIPEEEKADYLEALGVKEGGLQSLIQATYELLGLRTYLTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIH+DFEKGFIRAETV+Y+D VA ++ A+EKGLV
Sbjct: 296 LAGMKAPQAAGVIHTDFEKGFIRAETVSYEDLVACKTMTVAKEKGLV 342
>gi|428312089|ref|YP_007123066.1| GTP-binding protein YchF [Microcoleus sp. PCC 7113]
gi|428253701|gb|AFZ19660.1| GTP-binding protein YchF [Microcoleus sp. PCC 7113]
Length = 363
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/347 (63%), Positives = 275/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL SDL Q+++R+++ +K + ++++ E ALE++ AL +G+PA
Sbjct: 122 VRDIEVINLELALSDLAQVDRRIDRTRKQARTNKEAQI----ELGALEQLSAALNEGQPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R VTL + E +S+K L LLT KP+IY ANV+E DLA N V +V +A + V
Sbjct: 178 RQVTLTEEEVESVKVLGLLTAKPVIYAANVSEDDLA--SGNDWVEQVRQVAVTDNAQVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL ELP EER ++LASLGV E GL +LIR+TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 VSAQVESELVELPEEERGDFLASLGVEEGGLKSLIRATYELLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AGM APQAAG IH+DFE+GFIRAETVAY+D VA GS+ A+EKGLV
Sbjct: 296 QAGMKAPQAAGAIHTDFERGFIRAETVAYNDLVATGSMNGAKEKGLV 342
>gi|119510992|ref|ZP_01630113.1| hypothetical protein N9414_04185 [Nodularia spumigena CCY9414]
gi|119464337|gb|EAW45253.1| hypothetical protein N9414_04185 [Nodularia spumigena CCY9414]
Length = 363
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/349 (63%), Positives = 274/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIV+VPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDERLNVLANIASSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE+ DI+HV G +DP
Sbjct: 62 QTIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIIHVVRCFENEDIIHVAGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D+++INLEL SDL QIE+R+++ +K Q++ +DA E LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLSDLAQIERRIDRTRK------QARTSKDAQFEITVLEKLAAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+L + E + IK L LLT KPIIY ANV+E +LA N V +V +A+ +
Sbjct: 176 SVRQVSLAEEEAEIIKGLELLTNKPIIYAANVSEEELAT--GNDFVEKVRQVAATENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY+LLGLRTYFTSG KET+AW
Sbjct: 234 VVVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYTLLGLRTYFTSGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIH+DFE+GFIRAETV+Y+ V GSL AA+EKGLV
Sbjct: 294 TINAGMSAPQAAGVIHTDFERGFIRAETVSYEALVTHGSLNAAKEKGLV 342
>gi|428300391|ref|YP_007138697.1| GTP-binding protein YchF [Calothrix sp. PCC 6303]
gi|428236935|gb|AFZ02725.1| GTP-binding protein YchF [Calothrix sp. PCC 6303]
Length = 363
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/349 (61%), Positives = 276/349 (79%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+VEN KA+AANFPFCT PN+GIV+VPD RL+VL+ +S ++
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVENAKAEAANFPFCTKNPNIGIVSVPDERLNVLAKISATK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGL+KGAS+GEG+GN FLS+IREVD+I+ +VRCF+++DI+HV+G VDP
Sbjct: 62 QIVPAQVEFVDIAGLIKGASKGEGMGNAFLSNIREVDAIVHMVRCFDNDDIIHVDGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D+++INLEL +DL Q+EKR+E+ KK +K++Q++L LEK+ L GK
Sbjct: 122 VRDIEIINLELALADLGQVEKRIERTKKLARTSKEAQAEL------VILEKLVVELNTGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R + L E ++I L LLT KPII+ ANV+E DLA N +V +V +A+ +
Sbjct: 176 SVRQLGLTAEESETIAFLQLLTAKPIIFAANVSEDDLAT--GNEYVEKVRKVAAQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+SAQVE+EL +LPSEER ++LASLGV E GL +LIR+TY+LLGLRTYFT+GEKET+AW
Sbjct: 234 SIVSAQVESELIDLPSEERADFLASLGVEEGGLKSLIRATYTLLGLRTYFTTGEKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+AGM+APQAAGVIHSDFE+ FIRAETVAY+D V+ GS+ AA+ KGLV
Sbjct: 294 TIKAGMSAPQAAGVIHSDFERCFIRAETVAYEDLVSNGSMNAAKGKGLV 342
>gi|428215893|ref|YP_007089037.1| GTP-binding protein YchF [Oscillatoria acuminata PCC 6304]
gi|428004274|gb|AFY85117.1| GTP-binding protein YchF [Oscillatoria acuminata PCC 6304]
Length = 363
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/347 (63%), Positives = 272/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL +L+ LSKS+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLTMLAKLSKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+ EGLGN+FLSHIR+VD+++QVVRCF+D +I+HV G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASKNEGLGNQFLSHIRQVDALVQVVRCFDDENIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL SDL QIE+RM++ +K + +L E AALEK+ AL +G+ A
Sbjct: 122 VRDIEIINLELGLSDLAQIERRMDRTRKLARSSKEGQL----EMAALEKLAAALNEGQQA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V+L E + I+QL LLT KPIIY ANV+E DLA N V +V +AS + V
Sbjct: 178 RQVSLTAEETEVIQQLELLTSKPIIYAANVSEDDLAT--GNEWVEKVREIASVENAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL +LP EER ++LASLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 236 ISAQVESELVDLPEEERADFLASLGVEEGGLKSLIAATYQLLGLRTFLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
R GM APQAAGVIH+DFE+GFIRAETVAY D V+ GS+ AA+EKGL+
Sbjct: 296 REGMLAPQAAGVIHTDFERGFIRAETVAYQDLVSTGSMNAAKEKGLI 342
>gi|260434517|ref|ZP_05788487.1| GTP-binding protein YchF [Synechococcus sp. WH 8109]
gi|260412391|gb|EEX05687.1| GTP-binding protein YchF [Synechococcus sp. WH 8109]
Length = 363
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/351 (64%), Positives = 268/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL L+ LSKSQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDERLDRLTELSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 DTIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK ++++ E AALE+IQ L +G A
Sbjct: 122 SRDAEVINLELGLADLAQIEKRRERLKKQMRTSKEAQV----EDAALERIQAVLENGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV LND E IK L LLT KPIIY NV+E DLA+ N EV+ LA+ + V
Sbjct: 178 RSVDLNDEEAAMIKPLGLLTAKPIIYATNVSEDDLAE--GNTFCTEVVELAAKEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EE +YL LGV+E GL +LIR+TY LLGLRTYFT+GEKETKAWT
Sbjct: 236 ISAQVEAELVELGDEETADYLEGLGVTEGGLQSLIRATYRLLGLRTYFTTGEKETKAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
+AGMTAPQAAGVIH+DFE+GFIRA+T+ ++ + AGSLA AR KG WL
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTIGWEKLLEAGSLAEARNKG---WLR 343
>gi|255078490|ref|XP_002502825.1| predicted protein [Micromonas sp. RCC299]
gi|226518091|gb|ACO64083.1| predicted protein [Micromonas sp. RCC299]
Length = 373
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/351 (61%), Positives = 263/351 (74%), Gaps = 3/351 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+VEN A+AAN+PFCTIEPN GIV VPD RL L+ +S
Sbjct: 1 MALKTGIVGLPNVGKSTLFNALVENSTAEAANYPFCTIEPNSGIVPVPDERLQALAAISG 60
Query: 115 SQK--AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+ K VP +VEFVDIAGLVKGA+ G GLGNKFL++IRE D+I+ VVRCF+D+D++HV+G
Sbjct: 61 TSKDNIVPTTVEFVDIAGLVKGAADGAGLGNKFLANIRECDAIVHVVRCFDDDDVIHVDG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232
KVDP SD+ VIN EL +D+ QIEKR+E+L KG+AK + K E E+ AL KI+ L +
Sbjct: 121 KVDPLSDISVINFELALADMAQIEKRLERLNKGRAKSNADKEAEAGERDALAKIKVLLEE 180
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQ 291
GKPAR LN+ E +K L LLT KP IY ANV E DLAD GSNPHV V A +
Sbjct: 181 GKPARLADLNEDEWALVKDLYLLTAKPTIYAANVNEDDLADKGGSNPHVAVVREHAQEEG 240
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ ISAQVE+EL +L EER E+LA LG E GL +LIR+ Y L L+TYFT+GEKET
Sbjct: 241 AEVTIISAQVESELIKLDPEERDEFLADLGADEGGLQSLIRAAYKQLKLQTYFTTGEKET 300
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
+AWTI+ G TAPQAAGVIH+DFEKGFI+AETV YDDF+ + A+EKG+
Sbjct: 301 RAWTIKEGFTAPQAAGVIHTDFEKGFIKAETVGYDDFIVNNGFSGAKEKGV 351
>gi|87124842|ref|ZP_01080690.1| hypothetical protein RS9917_01432 [Synechococcus sp. RS9917]
gi|86167721|gb|EAQ68980.1| hypothetical protein RS9917_01432 [Synechococcus sp. RS9917]
Length = 363
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/351 (64%), Positives = 270/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPDPRL LS LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDPRLQQLSDLSGSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ELIPARIEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL Q+EKR E+LKK ++++ E AALE+IQ L G A
Sbjct: 122 ARDAEVINLELGLADLAQVEKRRERLKKQMRTSKEAQV----EDAALERIQAVLEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV L + E IK L LLT KPIIY NV+E DLA PG N EV+ LA+ + V
Sbjct: 178 RSVALTEEEAAMIKPLGLLTAKPIIYATNVSEDDLA-PG-NRFCEEVVALAASEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGVSE GL +LIR+TY+LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELIELGDEERADYLEGLGVSEGGLQSLIRATYNLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
+AGMTAPQAAGVIH+DFE+GFIRA+T+ + + AGSLA AR KG WL
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTIGWQKLLEAGSLAEARNKG---WLR 343
>gi|78184272|ref|YP_376707.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
CC9902]
gi|78168566|gb|ABB25663.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 363
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/351 (64%), Positives = 267/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL +L+ LSKSQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDDRLQLLTDLSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VP +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 NTVPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK +++++ E AALE+IQQ L G A
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSTEAQV----EDAALERIQQVLEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV + E IK L LLT KPIIY NV+E DLAD N + +EVM +A + V
Sbjct: 178 RSVEITAEEEGMIKPLGLLTAKPIIYATNVSEDDLAD--GNRYCSEVMAVAEQEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELVELGDEERADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
++GMTAPQ AGVIH+DFE+GFIRA+T+ + + AGSL AR KG WL
Sbjct: 296 KSGMTAPQTAGVIHTDFERGFIRAQTIGCEKLLEAGSLVEARNKG---WLR 343
>gi|218437238|ref|YP_002375567.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
7424]
gi|218169966|gb|ACK68699.1| GTP-binding protein YchF [Cyanothece sp. PCC 7424]
Length = 363
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/349 (62%), Positives = 273/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ LS+S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKLSQSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G V+P
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVEP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D++VINLELV +DL Q+EKR+++++K Q+K +DA E A LEKI L +GK
Sbjct: 122 VRDIEVINLELVLADLAQVEKRIDRVRK------QAKTSKDAQVELAILEKIIATLNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR V L++ E + I+ L LL+ KPIIY ANV+E DLA N V +V +A ++
Sbjct: 176 SARQVELSEEEEELIQSLGLLSRKPIIYAANVSEDDLAT--GNEWVEQVRQIAQTEEAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVE+EL +L EE ++L SLGV E GL +LI++TY LLGLRTY T+G ET+AW
Sbjct: 234 VVVSAQVESELVDLSPEECKDFLESLGVEEGGLKSLIKATYELLGLRTYLTTGPTETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIRAGM APQAAGVIH+DFE+GFIRAETVAY D V G + AA+EKGLV
Sbjct: 294 TIRAGMKAPQAAGVIHTDFERGFIRAETVAYQDLVTCGGMTAAKEKGLV 342
>gi|124022580|ref|YP_001016887.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9303]
gi|123962866|gb|ABM77622.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9303]
Length = 375
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/353 (64%), Positives = 269/353 (76%), Gaps = 13/353 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +L LSKS+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVAVPDERLQLLCDLSKSK 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCFED D++HV+G VDP
Sbjct: 74 ELIPTRMEFVDIAGLVKGASEGEGLGNKFLANIREVDAIVHVVRCFEDEDVIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D +VINLEL F+DL QIEKR +LKK Q++ DA E AALE+IQ L G
Sbjct: 134 SRDAEVINLELGFADLSQIEKRRLRLKK------QTRTSNDAQLEDAALERIQSVLEQGG 187
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR+V L+D E IK L LLT KPIIY NV+E DLA G N + EV +LA+ +
Sbjct: 188 AARAVELSDEEAKMIKPLGLLTAKPIIYATNVSEDDLA--GGNAYCEEVTSLATREDAEC 245
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISAQVEAEL EL ER++YL LGVSE GL +LI++TY LLGLRTYFT+GEKET+AW
Sbjct: 246 VRISAQVEAELIELGEAERIDYLEGLGVSEGGLKSLIKATYRLLGLRTYFTTGEKETRAW 305
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
T +AGMTAPQ AGVIH+DFE+GFIRA+T+AY + AGS A AR KG WL
Sbjct: 306 TFKAGMTAPQTAGVIHTDFERGFIRAQTIAYQKLLEAGSFAEARNKG---WLR 355
>gi|123966535|ref|YP_001011616.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9515]
gi|123200901|gb|ABM72509.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9515]
Length = 363
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/347 (61%), Positives = 270/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RLH L+ LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDHRLHQLATLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED++++HV+GK+DP
Sbjct: 62 NVIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIIHVVRCFEDSEVIHVSGKIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + K S+ +ED A LEKI+ L G
Sbjct: 122 LEDIEIINLELNLADLTQLQKRRERIKK-QVKTSKEAQQED---ALLEKIEDKLQKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++L+ E IKQL LT KPIIY N+ E+DLA+ N ++V LA + +
Sbjct: 178 RSISLSVEENLMIKQLGFLTAKPIIYATNLNENDLAE--GNNLSSKVQMLAKTENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LI+STY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELGPEDKKDYLIGLGVEEGGLKSLIKSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + +GS+A A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYKSLLESGSMANAKNKGLL 342
>gi|158335782|ref|YP_001516956.1| GTP-dependent nucleic acid-binding protein EngD [Acaryochloris
marina MBIC11017]
gi|158306023|gb|ABW27640.1| GTP-binding protein ychF [Acaryochloris marina MBIC11017]
Length = 363
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/347 (61%), Positives = 264/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL +LS LS S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCF+ +DI+HV G VDP
Sbjct: 62 KTVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL QIE+RME+ KK + +++ AE LEK++ L G+PA
Sbjct: 122 MRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQ----AELEILEKLRATLNAGQPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R L+ E++ IK L LLT+KPIIY NV+E DLA N V +V +A+ + V
Sbjct: 178 RQAELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLAT--GNKWVEQVRGIATAESAETVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EER ++L +LGV E GL +LI +TY LLGLRTYFTSG +E++AWTI
Sbjct: 236 MSAQVESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G APQAAGVIH+DFE+GFIRAETV Y D V GSL AA+EKGLV
Sbjct: 296 PIGTKAPQAAGVIHTDFERGFIRAETVGYQDLVENGSLTAAKEKGLV 342
>gi|116073126|ref|ZP_01470388.1| hypothetical protein RS9916_31787 [Synechococcus sp. RS9916]
gi|116068431|gb|EAU74183.1| hypothetical protein RS9916_31787 [Synechococcus sp. RS9916]
Length = 363
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/351 (64%), Positives = 268/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL LS LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDDRLQKLSDLSSSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ETIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK ++++ E AALE+IQ+ L G A
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSKEAQV----EDAALERIQEVLEKGGSA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV L+D E IK L LLT KPIIY NV+E DLA G N EV+ LA+ + V
Sbjct: 178 RSVALSDDEAAMIKPLGLLTAKPIIYATNVSEDDLA--GGNRFCEEVVALAAKEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELIELGDEERADYLEGLGVSEGGLQSLIRATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
+AGMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSLA AR KG WL
Sbjct: 296 KAGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLEAGSLAEARNKG---WLR 343
>gi|427707311|ref|YP_007049688.1| GTP-binding protein YchF [Nostoc sp. PCC 7107]
gi|427359816|gb|AFY42538.1| GTP-binding protein YchF [Nostoc sp. PCC 7107]
Length = 363
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/349 (65%), Positives = 273/349 (78%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSQISGSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D+++INLEL +DL QIE+R+E+ +K Q++ +DA E LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLADLGQIERRIERTRK------QARTSKDAQFEITVLEKLIAALNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V+LN+ E I+ L LLT KPIIY ANV+E DLA N V V +A+ +
Sbjct: 176 SVRQVSLNEEESAIIQGLGLLTSKPIIYAANVSEDDLAT--GNEFVERVRPIAAQENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVEAEL EL EE+ ++L SLG E GL +LIR+TY+LLGLRTYFTSG KET+AW
Sbjct: 234 VIVSAQVEAELVELAEEEKADFLESLGAKEGGLKSLIRATYTLLGLRTYFTSGPKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM+APQAAGVIHSDFE+GFIRAETVAY+D VA GS+ A+EKGLV
Sbjct: 294 TIHAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSMKGAKEKGLV 342
>gi|33863425|ref|NP_894985.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9313]
gi|33640874|emb|CAE21330.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9313]
Length = 363
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/353 (64%), Positives = 268/353 (75%), Gaps = 13/353 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +L LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVAVPDERLQLLCDLSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCFED D++HV+G VDP
Sbjct: 62 EMIPTRMEFVDIAGLVKGASEGEGLGNKFLANIREVDAIVHVVRCFEDEDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALEKIQQALMDGK 234
D +VINLEL F+DL QIEKR +LKK Q++ DA E AALE+IQ L G
Sbjct: 122 SRDAEVINLELGFADLSQIEKRRLRLKK------QTRTSNDAQFEDAALERIQSVLEQGG 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR+V L+D E IK L LLT KPIIY NV+E DLA G N + EV LA+ +
Sbjct: 176 AARAVELSDEEAKIIKPLGLLTAKPIIYATNVSEDDLA--GGNAYCEEVTTLATREGAEC 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISAQVEAEL EL ER++YL LGVSE GL +LI++TY LLGLRTYFT+GEKET+AW
Sbjct: 234 VRISAQVEAELIELGEAERIDYLEGLGVSEGGLKSLIKATYRLLGLRTYFTTGEKETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
T +AGMTAPQ AGVIH+DFE+GFIRA+T+AY + AGS A AR KG WL
Sbjct: 294 TFKAGMTAPQTAGVIHTDFERGFIRAQTIAYQKLLEAGSFAEARNKG---WLR 343
>gi|33861694|ref|NP_893255.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33640062|emb|CAE19597.1| probable GTP-binding protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/347 (60%), Positives = 268/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGSLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED +++HV+GK+DP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDTEVIHVSGKIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + K S+ +ED + LEKI+ L G
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVKTSKEAAQED---SLLEKIEDELQKGLSI 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++L D E IKQL LT KPI+Y N+ E+DLA+ N ++V + A+ + +
Sbjct: 178 RSISLTDEENLMIKQLGFLTAKPIVYATNLNENDLAE--GNDFSSKVQSFANSENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LI+STY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELEPEDKKDYLMGLGVEEGGLKSLIKSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+ A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIVNAKNKGLL 342
>gi|303283304|ref|XP_003060943.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457294|gb|EEH54593.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 371
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 261/349 (74%), Gaps = 1/349 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+VEN A+AAN+PFCTIEPN GIV VPD RL L+ +S
Sbjct: 1 MALKTGIVGLPNVGKSTLFNALVENSTAEAANYPFCTIEPNSGIVPVPDDRLQALATISG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGA+ G GLGNKFL++IRE D+++ VVRCF+D++++HV+GKV
Sbjct: 61 TTNIVPTTCEFVDIAGLVKGAADGAGLGNKFLANIRECDAVVHVVRCFDDDNVIHVDGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ VIN EL +DL QIE+R+E+L KG+AK + K E E+ AL K++ L DGK
Sbjct: 121 DPLEDIAVINFELALADLAQIERRLERLGKGRAKSNAEKEAEQGERDALAKLRVLLEDGK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
PAR +L + E +K L LLT KP +Y ANV E DLAD G SN HV V A SG
Sbjct: 181 PARLASLTEDEWALVKDLMLLTAKPCVYAANVNEEDLADAGASNVHVKAVRKHAETEGSG 240
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+SAQVE+EL +L EER E+LA LG E GL +LIR+ Y+ L L+TYFT+GEKET+A
Sbjct: 241 VTIVSAQVESELIKLDPEERAEFLADLGADEGGLKSLIRNAYTQLNLQTYFTTGEKETRA 300
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
WTI+ G TAPQAAGVIH+DFEKGFI+AETV YD+F+A A A+EKG+
Sbjct: 301 WTIKRGFTAPQAAGVIHTDFEKGFIKAETVGYDEFIACEGFAGAKEKGV 349
>gi|359461325|ref|ZP_09249888.1| GTP-binding protein YchF [Acaryochloris sp. CCMEE 5410]
Length = 363
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/347 (61%), Positives = 264/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL +LS LS S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCF+ +DI+HV G VDP
Sbjct: 62 KTVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL QIE+RME+ KK + +++ AE LEK++ L G+PA
Sbjct: 122 VRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQ----AELEILEKLRATLDAGQPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R L+ E++ IK L LLT+KPIIY NV+E DLA N V +V +A+ + V
Sbjct: 178 RQADLSPEEKEVIKYLGLLTLKPIIYATNVSEDDLAT--GNKWVEQVRGIATAESAETVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EER ++L +LGV E GL +LI +TY LLGLRTYFTSG +E++AWTI
Sbjct: 236 MSAQVESELVELTDEERHDFLEALGVGEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G APQAAGVIH+DFE+GFIRAETV Y D V GSL AA+EKGLV
Sbjct: 296 PIGTKAPQAAGVIHTDFERGFIRAETVGYQDLVENGSLTAAKEKGLV 342
>gi|284928700|ref|YP_003421222.1| GTP-binding protein YchF [cyanobacterium UCYN-A]
gi|284809159|gb|ADB94864.1| GTP-binding protein YchF [cyanobacterium UCYN-A]
Length = 363
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/347 (61%), Positives = 264/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGLVSVPDERLKVLAELSKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +P VEFVDIAGLVKGA+QGEGLGNKFL++IREVD+I+ VVRCF+D+DI+HV+G V P
Sbjct: 62 KILPTRVEFVDIAGLVKGAAQGEGLGNKFLANIREVDAIVHVVRCFDDDDIIHVSGSVSP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I+LEL +DL Q+EKR+ +LKK K+ + E E + LEK L G P
Sbjct: 122 TRDIETIDLELALADLSQVEKRLTRLKKQKSNQKE----EQEEISILEKFTIQLNKGMPV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R + L + ER IK L LLT+KP+IY ANV+E DL+ N V EV N AS+ + +
Sbjct: 178 RYLQLTEEERVLIKPLELLTLKPVIYAANVSEDDLS--SENDWVQEVRNFASNSHAKVIV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL E+ EE++E+L +LGVSE GL LI++ Y LLGLRTY T+G KET+AWTI
Sbjct: 236 VSAQVESELIEISDEEKLEFLNALGVSEGGLKLLIKAVYDLLGLRTYLTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFE+GFIRAET++Y D V ++ A+EKGLV
Sbjct: 296 YAGMKAPQAAGVIHSDFERGFIRAETISYKDLVFCKNITLAKEKGLV 342
>gi|87302112|ref|ZP_01084937.1| hypothetical protein WH5701_07924 [Synechococcus sp. WH 5701]
gi|87283037|gb|EAQ74993.1| hypothetical protein WH5701_07924 [Synechococcus sp. WH 5701]
Length = 363
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/375 (61%), Positives = 274/375 (73%), Gaps = 13/375 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG+VAVPDPRL +LS +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGVVAVPDPRLKMLSDVSSSR 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGDVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK +A+ S+ ED A L +IQ L G A
Sbjct: 122 VRDAEVINLELGLADLGQIEKRRERLKK-QARTSKEAQVED---AVLARIQAELEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R+V L + E +K L LLT KPIIY NV+E DLA NP V LA +G V
Sbjct: 178 RNVELGEEEAPMLKPLGLLTAKPIIYATNVSEDDLAQ--GNPFSRAVEELARKEGAGAVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL ER +YL LGVSE GL +LI +TY LLGLRTYFT+GEKET+AWTI
Sbjct: 236 ISAQVEAELIELGEAERADYLEGLGVSEGGLQSLIHATYGLLGLRTYFTTGEKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYK 416
AGMTAPQAAGVIH+DFE+GFIRA+TVAY + AGSL AR +G WL +
Sbjct: 296 TAGMTAPQAAGVIHTDFERGFIRAQTVAYAQLLEAGSLPEARNRG---WLRSE----GKE 348
Query: 417 YFHWNSYMLRYFFSL 431
Y ++ + F++
Sbjct: 349 YVVQEGDVMEFLFNV 363
>gi|116071083|ref|ZP_01468352.1| hypothetical protein BL107_15595 [Synechococcus sp. BL107]
gi|116066488|gb|EAU72245.1| hypothetical protein BL107_15595 [Synechococcus sp. BL107]
Length = 363
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/351 (63%), Positives = 265/351 (75%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL +L+ LSKSQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDDRLQLLTDLSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VP +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 NTVPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGTVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK +++++ E AAL +IQ L G A
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSTEAQV----EDAALARIQAVLEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV + E IK L LLT KPIIY NV+E DLAD N + +EV LA + V
Sbjct: 178 RSVEITAEEEGMIKPLGLLTAKPIIYATNVSEDDLAD--GNAYCSEVTALAEQEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELVELGDEERADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
++GMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSL AR KG WL
Sbjct: 296 KSGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLDAGSLVEARNKG---WLR 343
>gi|56422018|ref|YP_149336.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus
kaustophilus HTA426]
gi|56381860|dbj|BAD77768.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 366
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ + D L ++++ L DG
Sbjct: 120 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAFEYDI----LRRLKETLEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ D E +KQL LLT+KP++YVANV E D+ADP NP V +V A +
Sbjct: 176 KPARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADPSGNPFVKDVREFAKRDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V Y
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMHFRFN 365
>gi|434386311|ref|YP_007096922.1| GTP-binding protein YchF [Chamaesiphon minutus PCC 6605]
gi|428017301|gb|AFY93395.1| GTP-binding protein YchF [Chamaesiphon minutus PCC 6605]
Length = 362
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/347 (64%), Positives = 275/347 (79%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AAN+PFCTIEPNVG V+VPD RL VL+ + S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANYPFCTIEPNVGSVSVPDERLQVLANMVNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VP VEFVDIAGLVKGASQGEGLG+KFLSHIREVD+++QVVRCFED+DI+HV+G V+P
Sbjct: 62 SIVPTRVEFVDIAGLVKGASQGEGLGSKFLSHIREVDTLVQVVRCFEDDDIIHVSGVVNP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
+ D++VINLEL+ +D+DQIEKR+++ +K ++++ E ALEK+ L GKPA
Sbjct: 122 QQDIEVINLELILADIDQIEKRIDRARKTARTSKEAQV----EVVALEKLLVDLNAGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L+D E DSIK L LLT KP+IY ANV+E DLA N V +V +A+ +
Sbjct: 178 RKVALSDEESDSIKGLGLLTRKPMIYAANVSEEDLAT--GNAFVEQVRAVAAKEDAQVTL 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL ELP EE+ E+L SLGV+E GL +LIR+TY LLGLRTYFT G KET+AWTI
Sbjct: 236 VSAQVEAELLELPEEEKAEFLESLGVAEGGLKSLIRATYHLLGLRTYFTMGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AGM APQAAGVIHSDFEKGFIRA+T++Y D VA GS+ AA++KGL+
Sbjct: 296 KAGMFAPQAAGVIHSDFEKGFIRAKTISYADMVATGSMQAAKDKGLL 342
>gi|427714288|ref|YP_007062912.1| GTP-binding protein YchF [Synechococcus sp. PCC 6312]
gi|427378417|gb|AFY62369.1| GTP-binding protein YchF [Synechococcus sp. PCC 6312]
Length = 363
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/347 (61%), Positives = 270/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LR+GIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPDPRL VL+ +S+S
Sbjct: 2 LRSGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDPRLQVLATISQSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL QIE+R+E+ +K ++++ E A LEK+ + L +G+PA
Sbjct: 122 SRDMEVINLELALADLSQIERRIERTRKTARNSKEAQV----ELAGLEKLLETLNNGEPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R L + E + + L LLT KP+IY ANVAE++LA N V +V +A + V
Sbjct: 178 RKTQLTEDEAAATQFLGLLTSKPVIYAANVAETELAS--GNEWVEQVKTIAQAEGAQVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL EL EER +YLASLGV+E GL +LI++TY LLGLRT+FT+G KET+AWTI
Sbjct: 236 VSAQVEAELVELSPEERADYLASLGVTEGGLQSLIQATYDLLGLRTFFTTGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G APQAAG IH+DFE+GFIRAETVAY D V GS+ AA+EKGLV
Sbjct: 296 HQGDKAPQAAGTIHTDFERGFIRAETVAYQDLVTTGSMTAAKEKGLV 342
>gi|375010666|ref|YP_004984299.1| GTP-dependent nucleic acid-binding protein engD [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359289515|gb|AEV21199.1| GTP-dependent nucleic acid-binding protein engD [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 442
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 77 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 135
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 136 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 195
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ + D L ++++ L DG
Sbjct: 196 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAFEYDI----LRRLKETLEDG 251
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ D E +KQL LLT+KP++YVANV E D+ADP NP V +V A +
Sbjct: 252 KPARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADPSGNPFVKDVREFAKRDNAE 311
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +A
Sbjct: 312 VIVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRA 371
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSW--LHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V Y
Sbjct: 372 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQ 431
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 432 DGDIMHFRFN 441
>gi|428216948|ref|YP_007101413.1| GTP-binding protein YchF [Pseudanabaena sp. PCC 7367]
gi|427988730|gb|AFY68985.1| GTP-binding protein YchF [Pseudanabaena sp. PCC 7367]
Length = 364
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/348 (62%), Positives = 266/348 (76%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA++ N KA+AANFPFCTIEPNVG V VPD RL+ L+ + KS
Sbjct: 2 LKAGIVGLPNVGKSTLFNALIANAKAEAANFPFCTIEPNVGTVTVPDQRLNKLAEIGKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGAS+GEGLGN+FL +IR D+I+QVVRCF++ DI HV +DP
Sbjct: 62 QIVPARVEFVDIAGLVKGASKGEGLGNQFLGNIRACDAIVQVVRCFDNPDIHHVEATIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
D+++INLEL SDL Q+EKRME+ + K+S+ KE + E LEK+QQ L G+P
Sbjct: 122 ARDIEIINLELSLSDLAQVEKRMERTR----KNSRVASKEASFELEVLEKLQQTLDQGQP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR LN+ E +I L LLT+KPIIY ANV+E DLA N V +V +AS+ + V
Sbjct: 178 ARMANLNEEELAAISFLQLLTLKPIIYAANVSEDDLAT--GNAWVEKVRAIASNENAEVV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVEAEL EL +++E+L SLGVSE GL +LI++TY LLGLRTYFT G KE +AWT
Sbjct: 236 IVSAQVEAELIELSDADKLEFLESLGVSEGGLRSLIKATYDLLGLRTYFTVGPKEARAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGM+APQAAGVIHSDFE+GFIRAET+ +DD V GS+ AA+EKGLV
Sbjct: 296 ITAGMSAPQAAGVIHSDFERGFIRAETIGFDDLVQTGSMKAAKEKGLV 343
>gi|428220542|ref|YP_007104712.1| GTP-binding protein YchF [Synechococcus sp. PCC 7502]
gi|427993882|gb|AFY72577.1| GTP-binding protein YchF [Synechococcus sp. PCC 7502]
Length = 364
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/348 (61%), Positives = 263/348 (75%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG V VPD RL L+ + S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGTVTVPDERLDTLAKIGGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLVKGAS+GEGLGN+FL++IR D+I VVRCF+ DI HV G DP
Sbjct: 62 QIIPTRVEFVDIAGLVKGASKGEGLGNQFLANIRTCDAIAHVVRCFDSEDIHHVEGSTDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D+++INLEL SDL QIE+R+++ +KG ++ DS +K E A LEK+ + L +GKP
Sbjct: 122 ARDIEIINLELALSDLAQIERRIDRTRKGARSGDSDAKF----ELATLEKVAEFLNEGKP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR LN E+++I L LLT+KP IY ANV+ES+LA N +V EV +A + +
Sbjct: 178 ARRANLNAEEKEAIAVLQLLTLKPTIYAANVSESELAT--GNKYVEEVRAIAKTENAEVI 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQVE+EL +LP +R ++L SLGV+E GL +LIR+TY LLGLRTYFT G KE +AWT
Sbjct: 236 IISAQVESELVDLPEADRKDFLESLGVTEGGLKSLIRATYHLLGLRTYFTVGPKEARAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGMTAPQAAGVIHSDFEK FIRAETVA+ D VA GS+ AA+EKGLV
Sbjct: 296 INAGMTAPQAAGVIHSDFEKAFIRAETVAFPDLVANGSMKAAKEKGLV 343
>gi|332710494|ref|ZP_08430441.1| GTP-binding protein YchF [Moorea producens 3L]
gi|332350825|gb|EGJ30418.1| GTP-binding protein YchF [Moorea producens 3L]
Length = 363
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 272/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S+S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDQRLQVLAKISESE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+E+R+E+ +K + +K++ D ALE + L +GK
Sbjct: 122 ARDIEVINLELALADLGQVERRIERTRKQARSNKDAKMELD----ALETLSAGLNEGKLV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R ++L + E +S+KQL LLT KP+IY ANV+E DLA N V +V +A+ + V
Sbjct: 178 RQISLTEEEAESVKQLGLLTSKPVIYAANVSEDDLAT--GNDWVEQVRQIAATEDAQVVV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL ELP E+R ++L SLGV E GL +LI +TY LLGLRT+ T+G +ET+AWTI
Sbjct: 236 VSAQVESELIELPEEDREDFLQSLGVEEGGLKSLIGATYELLGLRTFLTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAG IHSDFE+GFIRAET+AY D VAAG++ AA+EKGLV
Sbjct: 296 AAGMKAPQAAGTIHSDFERGFIRAETIAYGDLVAAGAMTAAKEKGLV 342
>gi|428773522|ref|YP_007165310.1| GTP-binding protein YchF [Cyanobacterium stanieri PCC 7202]
gi|428687801|gb|AFZ47661.1| GTP-binding protein YchF [Cyanobacterium stanieri PCC 7202]
Length = 364
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/347 (62%), Positives = 264/347 (76%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKADAANFPFCTIEPNVGVVAVPDERLDVLAKISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+ +DI+HV+G VDP
Sbjct: 62 KVVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIIHVVRCFDSDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+E+R+E+LKK +++ + AE LEKI L +GK
Sbjct: 122 VRDMEVINLELSLADLTQVERRVERLKKQAKSNNKEAV---AEMEILEKILPILNEGKAV 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R + E + IK L LLT KP+IY ANV++ DLA N V V A+ + V
Sbjct: 179 RELEFTPEEEEIIKPLGLLTSKPVIYAANVSDEDLAT--GNQWVEGVKAEATKQNAMVVI 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EE+ E+L SLGV E GL +LIR+TY LLGLRTY T+GE ET+AWTI
Sbjct: 237 VSAQVESELVELGPEEKAEFLESLGVEEGGLQSLIRATYELLGLRTYLTTGETETRAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFE+GFIRAETVAY+D V+ GS+ AA+EKGLV
Sbjct: 297 IAGMKAPQAAGVIHSDFERGFIRAETVAYNDLVSCGSMGAAKEKGLV 343
>gi|33865238|ref|NP_896797.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
WH 8102]
gi|33638922|emb|CAE07219.1| probable GTP-binding protein [Synechococcus sp. WH 8102]
Length = 363
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/351 (63%), Positives = 269/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL L+ LS S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDERLDQLTKLSSSI 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 DTIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK + + S+ +ED AALE+IQ L DG A
Sbjct: 122 ARDAEVINLELGLADLAQIEKRRERLKK-QMRTSKEAQQED---AALERIQTVLEDGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV L + E IK L LLT KPIIY NV+E DLA+ N EV+NLA++ + V
Sbjct: 178 RSVELGEEEALMIKPLGLLTAKPIIYATNVSEEDLAE--GNAFCTEVINLAANEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL +ER +YL LGVSE GL +LI++TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELIELGDDERSDYLEGLGVSEGGLQSLIQATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
+AGMTAPQAAGVIH+DFE+GFIRA+T+ ++ + AGS A AR KG WL
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTIGWEKLIEAGSFAEARNKG---WLR 343
>gi|428315753|ref|YP_007113635.1| GTP-binding protein YchF [Oscillatoria nigro-viridis PCC 7112]
gi|428239433|gb|AFZ05219.1| GTP-binding protein YchF [Oscillatoria nigro-viridis PCC 7112]
Length = 363
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/347 (63%), Positives = 267/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPN GIVAVPD RL+VLS +S S
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNTGIVAVPDERLNVLSNISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIR VD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPTRMEFVDIAGLVKGASQGEGLGNQFLSHIRAVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D+INLEL+ +DL QIE+R+++ +K + +++ AE LEK+ L GKPA
Sbjct: 122 IRDIDIINLELILADLAQIERRLDRTRKLARNNKEAQ----AEVDVLEKLVAVLNAGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R D E + +K L LLT KPIIY ANV+E DLA N +V +V +A+ + V
Sbjct: 178 RQYNFTDEEAELVKGLELLTNKPIIYAANVSEDDLAT--GNSYVEQVREVAAKENAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EER ++L SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 236 VSAQVESELVELSEEERTDFLESLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFE+GFIRAETVAY+D VA G++ AA+EKGLV
Sbjct: 296 IAGMLAPQAAGVIHSDFERGFIRAETVAYEDLVATGAMNAAKEKGLV 342
>gi|126696665|ref|YP_001091551.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9301]
gi|126543708|gb|ABO17950.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9301]
Length = 363
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/347 (60%), Positives = 268/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGNLSCSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + + S+ KED + ++ L G
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAKEDTLLEKI---EEELEKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++LN+ E IKQL LT KPIIY N+ E+DLA+ N + V + AS+ + +
Sbjct: 178 RSISLNEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSSTVQSFASNENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELEPEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLL 342
>gi|194477209|ref|YP_002049388.1| hypothetical protein PCC_0763 [Paulinella chromatophora]
gi|171192216|gb|ACB43178.1| hypothetical protein PCC_0763 [Paulinella chromatophora]
Length = 363
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/374 (58%), Positives = 275/374 (73%), Gaps = 13/374 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +A AANFPFCTIEPNVG V++PD RL +LS +S+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAHAANFPFCTIEPNVGTVSIPDKRLELLSEMSRSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCF+DN+++HV+G+VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFDDNNVIHVSGRVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+ NLEL SDL+QIEKR E+LKK + ++S+ ED LE+I L G A
Sbjct: 122 VDDITTTNLELGLSDLNQIEKRRERLKK-QIRNSKEAQIED---RILEQIMTELEAGGTA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
SV + E IK L LLT+KPIIYV N++E DL+ N +V +V LA + V
Sbjct: 178 SSVNFTEEELILIKPLGLLTLKPIIYVINLSEDDLST--GNDYVMKVETLAHQEGAQTVH 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL ER++YL SLGV E GL NLI++TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELIELGPLERIDYLKSLGVEEGGLQNLIKATYYLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYK 416
RAGMTAPQAAG+IH+DFE+GFIRA+T++Y + AGSL AR KG W+ +
Sbjct: 296 RAGMTAPQAAGIIHTDFERGFIRAQTISYQKLLEAGSLIEARSKG---WIRSE----GKQ 348
Query: 417 YFHWNSYMLRYFFS 430
Y + +L + F+
Sbjct: 349 YLVEDGDVLEFLFN 362
>gi|427704453|ref|YP_007047675.1| GTP-binding protein YchF [Cyanobium gracile PCC 6307]
gi|427347621|gb|AFY30334.1| GTP-binding protein YchF [Cyanobium gracile PCC 6307]
Length = 400
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/359 (62%), Positives = 272/359 (75%), Gaps = 9/359 (2%)
Query: 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV 108
A IS L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG+VAVPD RL
Sbjct: 31 GAPYISPMLKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGVVAVPDERLQK 90
Query: 109 LSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIV 168
LS LS S++ VP VEFVDIAGLV+GASQGEGLGNKFL++IREVD+I+ VVRCFED+D++
Sbjct: 91 LSDLSSSKEIVPTRVEFVDIAGLVQGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVI 150
Query: 169 HVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228
HV+G VDP D +VINLEL +DL QIEKR E+LKK + + S+ ED AL ++Q
Sbjct: 151 HVSGSVDPVRDAEVINLELGLADLAQIEKRRERLKK-QMRTSKEAAAED---GALARLQA 206
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L G R VTL + E+ ++ L LLT KPIIY NV+E DLA+ N V V +LA+
Sbjct: 207 ELEQGGAVRRVTLTEEEQSLVRNLGLLTGKPIIYATNVSEDDLAE--GNAWVAAVEDLAA 264
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISAQVEAEL +L +EER +YLA LGVSE GL +LIR+TY LLGLRTYFT+GE
Sbjct: 265 REGAEAVRISAQVEAELVDLAAEERADYLAGLGVSEGGLQSLIRATYRLLGLRTYFTTGE 324
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
KET+AWTI AGMTAPQAAGVIH+DFE+GFIRA+T+AY + AG+L AR +G WL
Sbjct: 325 KETRAWTITAGMTAPQAAGVIHTDFERGFIRAQTIAYAQLLEAGTLGEARNRG---WLR 380
>gi|113953017|ref|YP_730143.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
CC9311]
gi|113880368|gb|ABI45326.1| GTP-binding protein YchF [Synechococcus sp. CC9311]
Length = 363
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/351 (63%), Positives = 267/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL LS LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDDRLQKLSDLSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ELIPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK +++++++ ALE+IQQ L G A
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSKEAQVEDE----ALERIQQVLEAGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS+ L + E IK L LLT KPIIY NV+E DLA N + EV+ LA + V
Sbjct: 178 RSIELTEEEALMIKPLGLLTAKPIIYATNVSEDDLA--AGNAYCEEVVALAEKEGAESVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EE +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELVELGDEECADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
RAGMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSL+ AR KG WL
Sbjct: 296 RAGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLEAGSLSEARNKG---WLR 343
>gi|433447841|ref|ZP_20411217.1| GTP-dependent nucleic acid-binding protein EngD [Anoxybacillus
flavithermus TNO-09.006]
gi|431999682|gb|ELK20598.1| GTP-dependent nucleic acid-binding protein EngD [Anoxybacillus
flavithermus TNO-09.006]
Length = 366
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 265/350 (75%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKTLTELFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD ++ + D L ++++ G
Sbjct: 120 DPIADIETINLELIFADLETVDKRIDRVGKMAKQKDKEAVFEYDI----LSRLKETFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+++ + E +KQL LLT+KP++YVANV E DLADP SN +V +V A + +
Sbjct: 176 KPARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDLADPNSNEYVQQVKAFAKEDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A+VEAE+ EL EE+ +L LG+ +SGL LIR++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKVEAEMAELDDEEKELFLQELGIEQSGLDQLIRASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKV 345
>gi|91070029|gb|ABE10955.1| putative GTP-binding protein [uncultured Prochlorococcus marinus
clone ASNC3046]
Length = 363
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/347 (60%), Positives = 268/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGNLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL SDL Q++KR E++KK + + S+ KED + ++ L G
Sbjct: 122 LDDIEIINLELNLSDLSQLQKRRERIKK-QVRTSKEAAKEDTLLEKI---EEELEKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++L++ E IKQL LT KPIIY N+ E+DLA+ N +V + AS+ + +
Sbjct: 178 RSISLSEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSLKVQSFASNENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELEPEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGL+
Sbjct: 296 KNGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLL 342
>gi|384136976|ref|YP_005519690.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339291061|gb|AEJ45171.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 486
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/360 (58%), Positives = 269/360 (74%), Gaps = 11/360 (3%)
Query: 43 SRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
+RRR ++MSL+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VP
Sbjct: 114 TRRR-----GVNMSLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVP 167
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
DPRL VL+ + ++ VP + EFVDIAGLVKGASQGEGLGN+FL+HIREVD+I+ VVRCF
Sbjct: 168 DPRLQVLADIVHPKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLAHIREVDAIVHVVRCF 227
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKA 221
E++DI HV G VDP D+D+IN+EL+ +DL+ + KR+++ +K K+ D + K+ E
Sbjct: 228 ENSDITHVAGTVDPLRDIDIINVELILADLETVAKRLDRARKNMKSGDKRFKV----EVE 283
Query: 222 ALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVN 281
ALE+IQ AL +PARSV LN+ E ++ L LLT KP++YVANV E DL DP +NP+V
Sbjct: 284 ALERIQAALESERPARSVELNEEEAIILRDLHLLTAKPVLYVANVGEDDLLDPSANPYVQ 343
Query: 282 EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLR 341
+V A S V + AQ+E+E+ +L E+R +L LG+ E GL LIR Y LLGL
Sbjct: 344 QVEERAKSEGSEVVVVCAQLESEVADLDGEDRDAFLRDLGLEEPGLHRLIRKAYQLLGLI 403
Query: 342 TYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T+FT+GE E +AWTIR G APQAAGVIHSDFE+GFIRAE VAYDD VAAGS AARE+G
Sbjct: 404 TFFTAGEPEVRAWTIRQGTKAPQAAGVIHSDFERGFIRAEVVAYDDLVAAGSFQAAREQG 463
>gi|218291074|ref|ZP_03495097.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius LAA1]
gi|218238959|gb|EED06166.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius LAA1]
Length = 366
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPDPRL VL+ +
Sbjct: 1 MSLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVPDPRLQVLADIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP + EFVDIAGLVKGASQGEGLGN+FL+HIREVD+I+ VVRCFE++DI HV G V
Sbjct: 60 PKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLAHIREVDAIVHVVRCFENSDITHVAGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D+IN+EL+ +DL+ + KR+++ +K K+ D + K+ E ALE+IQ AL
Sbjct: 120 DPLRDIDIINVELILADLETVAKRLDRARKNMKSGDKRFKI----EVEALERIQAALESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PARSV LN+ E ++ L LLT KP++Y ANV E D+ DP SNP+V +V A S
Sbjct: 176 RPARSVELNEEEASILRDLHLLTAKPVLYAANVGEDDILDPSSNPYVQQVEARAKSEGSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + AQ+E+E+ EL E+R +L LG+ E GL LIR Y LLGL T+FT+GE E +A
Sbjct: 236 VVVVCAQLESEVAELEGEDRDAFLRDLGLEEPGLHRLIRKAYQLLGLITFFTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WTIR G APQAAGVIHSDFE+GFIRAE VAYDD VAAGS AARE+G + Y
Sbjct: 296 WTIRKGTKAPQAAGVIHSDFERGFIRAEVVAYDDLVAAGSFQAAREQGKIRLEGKDYVVQ 355
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 356 DGDVCYFRFN 365
>gi|123968846|ref|YP_001009704.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. AS9601]
gi|123198956|gb|ABM70597.1| probable GTP-binding protein [Prochlorococcus marinus str. AS9601]
Length = 363
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/347 (60%), Positives = 267/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGNLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + + S+ KED + ++ L G
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAKEDTLLEKI---EEELEKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++LN+ E IKQL LT KPIIY N+ E+DLA N ++V + A + + +
Sbjct: 178 RSISLNEEENLIIKQLGFLTAKPIIYATNLNENDLA--LGNDFSSKVQSFARNENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELIELEQEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLL 342
>gi|334118705|ref|ZP_08492793.1| GTP-binding protein YchF [Microcoleus vaginatus FGP-2]
gi|333458935|gb|EGK87550.1| GTP-binding protein YchF [Microcoleus vaginatus FGP-2]
Length = 363
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/347 (63%), Positives = 267/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPN GIVAVPD RL VLS +S S
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNTGIVAVPDERLKVLSNISNSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIR VD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPTRMEFVDIAGLVKGASQGEGLGNQFLSHIRAVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D+INLEL+ +DL QIE+R+++ +K + +++ AE LEK+ L GKPA
Sbjct: 122 IRDIDIINLELILADLAQIERRLDRTRKLARNNKEAQ----AEVDVLEKLVVVLNAGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R + D E + +K L LLT KPIIY ANV++ DLA N +V +V +A+ + V
Sbjct: 178 RQYSFTDEEAELVKGLELLTNKPIIYAANVSDDDLAT--GNSYVEQVREVAAKENAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EER ++L SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 236 VSAQVESELVELSEEERTDFLESLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFE+GFIRAETVAY+D VA G++ AA+EKGLV
Sbjct: 296 IAGMLAPQAAGVIHSDFERGFIRAETVAYEDLVATGAMNAAKEKGLV 342
>gi|258512889|ref|YP_003186323.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479615|gb|ACV59934.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 366
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPDPRL VL+ +
Sbjct: 1 MSLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVPDPRLQVLADIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP + EFVDIAGLVKGASQGEGLGN+FL+HIREVD+I+ VVRCFE++DI HV G V
Sbjct: 60 PKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLAHIREVDAIVHVVRCFENSDITHVAGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D+IN+EL+ +DL+ + KR+++ +K K+ D + K+ E ALE+IQ AL
Sbjct: 120 DPLRDIDIINVELILADLETVAKRLDRARKNMKSGDKRFKI----EVEALERIQAALESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PARSV LN+ E ++ L LLT KP++Y ANV E D+ DP SNP+V +V A S
Sbjct: 176 RPARSVELNEEEASILRDLHLLTAKPVLYAANVGEDDILDPSSNPYVQQVEARAKSEGSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + AQ+E+E+ EL E+R +L LG+ E GL LIR Y LLGL T+FT+GE E +A
Sbjct: 236 VVVVCAQLESEVAELEGEDRDTFLRDLGLEEPGLHRLIRKAYQLLGLITFFTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSW--LHYHEH 411
WTIR G APQAAGVIHSDFE+GFIRAE +AYDD VAAGS AARE+G + Y
Sbjct: 296 WTIRKGTKAPQAAGVIHSDFERGFIRAEVIAYDDLVAAGSFQAAREQGKIRLEGKDYVVQ 355
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 356 DGDVCYFRFN 365
>gi|212640667|ref|YP_002317187.1| GTP-dependent nucleic acid-binding protein EngD [Anoxybacillus
flavithermus WK1]
gi|212562147|gb|ACJ35202.1| Predicted GTPase, probable translation factor [Anoxybacillus
flavithermus WK1]
Length = 366
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/350 (58%), Positives = 265/350 (75%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKTLTELFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD ++ + D L ++++ G
Sbjct: 120 DPIADIETINLELIFADLETVDKRIDRVGKMAKQKDKEAVFEYDI----LSRLKETFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+++ + E +KQL LLT+KP++YVANV E DLA+P SN +V +V A + +
Sbjct: 176 KPARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDLANPNSNEYVQQVKAFAKEDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A+VEAE+ EL EE+ +L LG+ +SGL LIR++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKVEAEMAELDDEEKELFLQELGIEQSGLDQLIRASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKV 345
>gi|78213481|ref|YP_382260.1| translation-associated GTPase [Synechococcus sp. CC9605]
gi|78197940|gb|ABB35705.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 363
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/351 (62%), Positives = 266/351 (75%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL L+ LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDERLDRLTELSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P + FVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 DTIPTRMGFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK ++++ E AALE+IQ L +G A
Sbjct: 122 SRDAEVINLELGLADLAQIEKRRERLKKQMRTSKEAQV----EDAALERIQAVLENGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV LND E IK L LLT KPIIY NV+E DLA+ N EV+ LA+ + V
Sbjct: 178 RSVDLNDEEAVMIKPLGLLTAKPIIYATNVSEDDLAE--GNAFCTEVVELAAKEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EE +YL LGV E GL +LIR+TY LLG+RTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELVELGDEETADYLEGLGVKEGGLQSLIRATYRLLGMRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
+AGMTAPQAAGVIH+DFE+GFIRA+T+ ++ + AGSL+ AR KG WL
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTIGWEKLLEAGSLSEARNKG---WLR 343
>gi|170078335|ref|YP_001734973.1| GTP-binding protein [Synechococcus sp. PCC 7002]
gi|169886004|gb|ACA99717.1| GTP-binding protein [Synechococcus sp. PCC 7002]
Length = 364
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 271/348 (77%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA AANFPFCTIEPNVG+VAVPD RL VL+ +SKS
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALMDGKP 235
D++VI+LEL+ +DL Q+EKR+++ + K ++S+ KE E A LEKI L D +P
Sbjct: 122 IRDIEVISLELILADLAQVEKRLDRAR----KQAKSRAKEALLEVAVLEKILPVLEDARP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L++ E +IK L LLT KP+IY NV+E DLAD N V +V LA + V
Sbjct: 178 AREVELDEEEELAIKALGLLTRKPVIYATNVSEEDLAD--GNAWVEQVRELAQQENAQVV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVEAEL EL + E+ ++L SLGV E GL +LIR+TY LLGLRTYFT+G +ET+AWT
Sbjct: 236 VVSAQVEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I GM APQAAGVIH+DFE+GFIRAETVAY D V G++ AA+EKGLV
Sbjct: 296 IHVGMKAPQAAGVIHTDFERGFIRAETVAYQDLVDCGAMPAAKEKGLV 343
>gi|196249876|ref|ZP_03148572.1| GTP-binding protein YchF [Geobacillus sp. G11MC16]
gi|196210752|gb|EDY05515.1| GTP-binding protein YchF [Geobacillus sp. G11MC16]
Length = 366
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 266/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL+VL + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLNVLMEMFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR+E++ K K KD ++ + D L ++++ L G
Sbjct: 120 DPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAFEYDI----LLRLKETLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V D E +KQL LLT KP++YVANV E D+ DP SNP V EV A +
Sbjct: 176 KPARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+Y D VAAGS+AAARE G V Y
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMHFRFN 365
>gi|261420892|ref|YP_003254574.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus sp.
Y412MC61]
gi|319768563|ref|YP_004134064.1| GTP-binding protein YchF [Geobacillus sp. Y412MC52]
gi|261377349|gb|ACX80092.1| GTP-binding protein YchF [Geobacillus sp. Y412MC61]
gi|317113429|gb|ADU95921.1| GTP-binding protein YchF [Geobacillus sp. Y412MC52]
Length = 366
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 266/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ + D L ++++ L G
Sbjct: 120 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAFEYDI----LRRLKETLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ D E +KQL LLT+KP++YVANV E D+AD NP V +V A +
Sbjct: 176 KPARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADSSGNPFVKDVREFAKRDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V Y
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMHFRFN 365
>gi|448239755|ref|YP_007403813.1| GTP-dependent nucleic acid-binding protein [Geobacillus sp. GHH01]
gi|445208597|gb|AGE24062.1| GTP-dependent nucleic acid-binding protein [Geobacillus sp. GHH01]
Length = 366
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 266/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ + D L ++++ L G
Sbjct: 120 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAFEYDI----LRRLKETLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ D E +KQL LLT+KP++YVANV E D+AD NP V +V A +
Sbjct: 176 KPARTLEFTDEEMKIVKQLHLLTIKPMLYVANVGEEDIADSSGNPFVKDVREFAKRDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V Y
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMHFRFN 365
>gi|254526846|ref|ZP_05138898.1| GTP-binding protein YchF [Prochlorococcus marinus str. MIT 9202]
gi|221538270|gb|EEE40723.1| GTP-binding protein YchF [Prochlorococcus marinus str. MIT 9202]
Length = 363
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 271/347 (78%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLKELGDLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL +DL Q++KR E++KK + + S+ KED LEKI++ L G
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAKED---TLLEKIEEELQKGLSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++L++ E IKQL LT KPIIY N+ E+DLA+ N ++V + A+ + +
Sbjct: 178 RSISLSEEENLIIKQLGFLTAKPIIYAINLNENDLAE--GNDFSSKVQSFANSENTECIK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVE+EL EL SE++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI
Sbjct: 236 ISAQVESELMELESEDKKDYLMGLGVKEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ GMTAPQAAGVIH+DFEKGFIRA+T++Y + +GS+A A+ KGL+
Sbjct: 296 KDGMTAPQAAGVIHTDFEKGFIRAQTISYQSLIESGSIANAKTKGLL 342
>gi|402814116|ref|ZP_10863710.1| GTP-dependent nucleic acid-binding protein EngD [Paenibacillus
alvei DSM 29]
gi|402507963|gb|EJW18484.1| GTP-dependent nucleic acid-binding protein EngD [Paenibacillus
alvei DSM 29]
Length = 366
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/348 (58%), Positives = 267/348 (76%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLVKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNRTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD+ INLELV +DL+ +EKR+++ KK K+ D K AE A LE++++AL D
Sbjct: 120 DPVSDIQTINLELVLADLESVEKRLDRTKKNMKSGDK----KYAAEAAVLERLKEALYDD 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ L+D E+ ++ + LLTMKP++Y ANV+E + D SNP+V +V + A+ +
Sbjct: 176 KPARSLELSDEEKVLVRDMHLLTMKPVLYAANVSEDGVKDADSNPYVQQVRDFAAAENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +A
Sbjct: 236 VVPISAKVEAEIAELEGEDKEMFLEELGLDESGLNRLIKAAYRLLGLYTYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR GM APQAAGVIHSDFE+GFIRAE V+YDD VA GS+ A +E+G
Sbjct: 296 WTIRKGMKAPQAAGVIHSDFERGFIRAEVVSYDDLVAGGSMNAVKEQG 343
>gi|352093573|ref|ZP_08954744.1| GTP-binding protein YchF [Synechococcus sp. WH 8016]
gi|351679913|gb|EHA63045.1| GTP-binding protein YchF [Synechococcus sp. WH 8016]
Length = 363
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/351 (63%), Positives = 264/351 (75%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL LS LS+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDDRLQKLSDLSQSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 EIIPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK +++++++ AL +IQ+ L G A
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSKEAQVEDE----ALARIQEVLEAGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV L D E IK L LLT KPIIY NV+E DLA N + EV LA + V
Sbjct: 178 RSVELTDEEALMIKPLGLLTAKPIIYATNVSEDDLA--AGNGYCEEVAALAEKEGAESVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EE +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELVELGEEECADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
RAGMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSL AR KG WL
Sbjct: 296 RAGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLEAGSLPEARNKG---WLR 343
>gi|297531677|ref|YP_003672952.1| GTP-binding protein YchF [Geobacillus sp. C56-T3]
gi|297254929|gb|ADI28375.1| GTP-binding protein YchF [Geobacillus sp. C56-T3]
Length = 366
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 265/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ I KR+E++ K K KD ++ + D L ++++ L G
Sbjct: 120 DPLADIETINLELVLADLETIYKRIERVGKIAKQKDKEAAFEYDI----LRRLKETLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ D E +KQL LLT+KP++YVANV E D+AD NP V +V A +
Sbjct: 176 KPARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADSSGNPFVKDVREFAKRDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G V Y
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMHFRFN 365
>gi|354581619|ref|ZP_09000522.1| GTP-binding protein YchF [Paenibacillus lactis 154]
gi|353200236|gb|EHB65696.1| GTP-binding protein YchF [Paenibacillus lactis 154]
Length = 366
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/347 (58%), Positives = 266/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +DLD +EKR+E+ KK K + ++ E LE++++AL + +
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIERTKK-NMKGGNKQYAQEVE--LLERLKEALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ ++ L LLT+KP++Y ANV+E + D SNP+V +V A+ +
Sbjct: 177 PARSVELSDEEKLIVRDLHLLTLKPVLYAANVSEDGVTDADSNPYVQQVREFAAAENAAV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G
Sbjct: 297 TIRKGTKAPQAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERG 343
>gi|113475013|ref|YP_721074.1| GTP-dependent nucleic acid-binding protein EngD [Trichodesmium
erythraeum IMS101]
gi|110166061|gb|ABG50601.1| GTP-binding protein YchF [Trichodesmium erythraeum IMS101]
Length = 363
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/349 (63%), Positives = 271/349 (77%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL+VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDNRLNVLAQISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+QVVRCF+ DI+HV+G VDP
Sbjct: 62 QTVPTRIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVQVVRCFDSEDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D++VINLEL SDL Q+E+R+E+ KK +K++Q++L+ LEK++ L +G
Sbjct: 122 VRDIEVINLELALSDLAQVERRIERTKKQARTSKEAQTELE------VLEKLEVVLNEGN 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
+ LN E IK L LLT KPIIY ANV+E DLA+ N V +V N+A+ +
Sbjct: 176 SVKMAGLNKDESLIIKPLNLLTSKPIIYAANVSEDDLAN--GNDWVEKVRNIAAVENAQV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISAQVE+EL ELP EE +YL SLGV E GL +LI++TY LLGL TYFT+GEKETKAW
Sbjct: 234 VVISAQVESELIELPEEEITDYLKSLGVEEGGLKSLIKATYELLGLHTYFTTGEKETKAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+AG APQAAGVIH+DFE+GFIRAET+AY D V +GS+ A+EKGLV
Sbjct: 294 TIKAGTLAPQAAGVIHTDFERGFIRAETIAYKDLVTSGSMTTAKEKGLV 342
>gi|387928253|ref|ZP_10130931.1| GTP-binding protein YchF [Bacillus methanolicus PB1]
gi|387587839|gb|EIJ80161.1| GTP-binding protein YchF [Bacillus methanolicus PB1]
Length = 366
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/352 (57%), Positives = 262/352 (74%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDHRLTKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ INLEL+ +DL+ +EKR+ EK+ K K KD+ + + L +++A
Sbjct: 120 DPVADIETINLELILADLESVEKRIGRVEKMAKQKDKDASFEFE------VLSMLKEAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR+V +D + +K L LLT+KP++YVANV E D+ADP SN +V +V A
Sbjct: 174 SEKPARAVEFSDEQMKVVKGLHLLTIKPVLYVANVGEEDVADPSSNEYVQQVKEYAEKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A++E+E+ EL EE+ +L LG+ ESGL LIR YSLLGL TYFT+G +E
Sbjct: 234 SEVIVVCAKIESEIAELDGEEKAMFLQELGIEESGLDQLIRKAYSLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R GM APQ AG+IHSDFE+GFIRAETV+YDD +AAGS+AAARE G V
Sbjct: 294 RAWTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLLAAGSMAAAREAGKV 345
>gi|390438492|ref|ZP_10226956.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis sp. T1-4]
gi|389838118|emb|CCI31080.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis sp. T1-4]
Length = 375
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/348 (63%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 134 ARDIEVINLELALADLGQMEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 188
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 189 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 246
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 247 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 306
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 307 IIAGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 354
>gi|138897057|ref|YP_001127510.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus
thermodenitrificans NG80-2]
gi|134268570|gb|ABO68765.1| GTP-binding protein YchF [Geobacillus thermodenitrificans NG80-2]
Length = 366
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 265/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL+VL + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLNVLMEMFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR+E++ K K KD ++ + D L ++++ L G
Sbjct: 120 DPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAFEYDI----LLRLKETLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V D E +KQL LLT KP++YVANV E D+ DP SNP V EV A +
Sbjct: 176 KPARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+ +A
Sbjct: 236 VIVVCAKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM APQ AG+IHSDFE+GFIRAETV+Y D VAAGS+AAARE G V Y
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMHFRFN 365
>gi|440751943|ref|ZP_20931146.1| GTPase of unknown function family protein [Microcystis aeruginosa
TAIHU98]
gi|440176436|gb|ELP55709.1| GTPase of unknown function family protein [Microcystis aeruginosa
TAIHU98]
Length = 363
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 276/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 176
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V
Sbjct: 177 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVV 234
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 235 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 294
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 295 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 342
>gi|425447824|ref|ZP_18827806.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9443]
gi|389731540|emb|CCI04418.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9443]
Length = 392
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/348 (63%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 31 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 90
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 91 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 150
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 151 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 205
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 206 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 263
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 264 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 323
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 324 IIAGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 371
>gi|166368340|ref|YP_001660613.1| GTP-dependent nucleic acid-binding protein EngD [Microcystis
aeruginosa NIES-843]
gi|166090713|dbj|BAG05421.1| GTP-binding protein [Microcystis aeruginosa NIES-843]
Length = 363
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 276/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 176
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V
Sbjct: 177 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRKIAQEEQAKVV 234
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 235 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 294
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 295 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 342
>gi|421858744|ref|ZP_16291004.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410831714|dbj|GAC41441.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 366
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 266/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVAVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +DL+ +EKR+E+ KK K K ++AE LE++++AL +
Sbjct: 120 NPVSDIQTINLELILADLESVEKRLERTKK-NMKSGDKKFAQEAE--VLERLKEALYHDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ + D E+ ++ L LLTMKP++Y ANV+E +AD +NP+V +V + A+ +
Sbjct: 177 PARSLDVTDDEKLLVRDLHLLTMKPVLYAANVSEDGIADTDNNPYVQQVRDFAAKENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELDGEDKEMFLQELGLEESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR GM APQAAGVIH+DFE+GFIRAE V+YDD VAAGS+ +E+G
Sbjct: 297 TIRKGMKAPQAAGVIHTDFERGFIRAEVVSYDDLVAAGSMNVVKEQG 343
>gi|425461525|ref|ZP_18841003.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9808]
gi|389825647|emb|CCI24489.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9808]
Length = 380
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 276/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 139 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 193
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V
Sbjct: 194 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVV 251
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 252 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 311
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 312 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 359
>gi|425464979|ref|ZP_18844289.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9809]
gi|389832870|emb|CCI23128.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9809]
Length = 380
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 276/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 139 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 193
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V
Sbjct: 194 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRKIAQEEQAKVV 251
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 252 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 311
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 312 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 359
>gi|425439388|ref|ZP_18819714.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9717]
gi|389720401|emb|CCH95902.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9717]
Length = 375
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 134 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 188
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 189 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 246
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 247 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 306
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 307 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 354
>gi|425456428|ref|ZP_18836139.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9807]
gi|389802499|emb|CCI18462.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9807]
Length = 363
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 176
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 177 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 234
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 235 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 294
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 295 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 342
>gi|148241815|ref|YP_001226972.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
RCC307]
gi|147850125|emb|CAK27619.1| GTP-dependent nucleic acid-binding protein EngD (probable
translation factor) [Synechococcus sp. RCC307]
Length = 363
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/345 (63%), Positives = 263/345 (76%), Gaps = 6/345 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL L+ LS SQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDERLQQLAELSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLV GASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVAGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +D QIEKR ++LKK ++++ E AALE+I L G A
Sbjct: 122 GRDAEVINLELALADASQIEKRRDRLKKQMRTSKEAQI----EDAALERIAAVLDGGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV +++ E IK L LLT KPIIY ANV+E DLA G N V +A+ + V
Sbjct: 178 RSVEISEEEAALIKPLGLLTAKPIIYAANVSEDDLA--GGNGFSEAVQAMAAKESAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL EL EER +YL LGVSE GL +LIR+TY+LLGLRTYFT+GEKET+AWTI
Sbjct: 236 VSAQVEAELVELGDEERGDYLEGLGVSEGGLQSLIRATYNLLGLRTYFTTGEKETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AGMTAPQAAGVIH+DFE+GFIRA+T+ + +AAGS A+ KG
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTIGCQELLAAGSFNEAKSKG 340
>gi|308800268|ref|XP_003074915.1| YchF Nucleic acid binding GTPase, translation factor, putative (IC)
[Ostreococcus tauri]
gi|116061465|emb|CAL52183.1| YchF Nucleic acid binding GTPase, translation factor, putative (IC)
[Ostreococcus tauri]
Length = 420
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/362 (57%), Positives = 256/362 (70%), Gaps = 1/362 (0%)
Query: 43 SRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
S R S S SL+ GIVGLPNVGKSTLFNA+VEN +AQAANFPFCTIEPN GIV V
Sbjct: 38 SHRTAHSTSTCRASLKTGIVGLPNVGKSTLFNALVENSRAQAANFPFCTIEPNFGIVPVS 97
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
D RL L+ +S+S VPA+VE VDIAGLVKGAS+GEGLGNKFL++IRE D+I+ VVRCF
Sbjct: 98 DKRLETLAAISRSSNIVPATVEIVDIAGLVKGASEGEGLGNKFLANIRECDAIVHVVRCF 157
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA 222
D++IVHVNG VDP+ D +IN EL +D+ QI+KRMEK++K K K S + ++E
Sbjct: 158 NDDNIVHVNGIVDPRRDAAIINTELALADMGQIQKRMEKIQKAKGKVSVTGQTAESELKV 217
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVN 281
L I L GK R + LND +R I +L LLT KP IY ANV E DLA G+ N H
Sbjct: 218 LADILSQLEQGKQVRQMELNDDDRYIITELRLLTAKPCIYAANVPEGDLATNGADNVHFK 277
Query: 282 EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLR 341
+ + A + +G +SAQV AEL +L E+RV+YL +G + G LI + Y L L
Sbjct: 278 ALADFAVESGAGITCVSAQVAAELKDLTEEDRVDYLLCIGTNSDGTSELIETAYRQLELL 337
Query: 342 TYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TYFT+GEKET+AWTIR G TAPQAAGVIH+DFEKGFI+AETV YDDFV++G A+E G
Sbjct: 338 TYFTTGEKETRAWTIRRGFTAPQAAGVIHTDFEKGFIKAETVHYDDFVSSGGFTGAKENG 397
Query: 402 LV 403
L+
Sbjct: 398 LL 399
>gi|425435770|ref|ZP_18816216.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9432]
gi|389679632|emb|CCH91585.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9432]
Length = 380
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 139 SRDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 193
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 194 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 251
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 252 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 311
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 312 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 359
>gi|428781293|ref|YP_007173079.1| GTP-binding protein YchF [Dactylococcopsis salina PCC 8305]
gi|428695572|gb|AFZ51722.1| GTP-binding protein YchF [Dactylococcopsis salina PCC 8305]
Length = 363
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/349 (63%), Positives = 266/349 (76%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL +L+ +SKSQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEILAEISKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV GAS+GEGLGN+FL++IREVD+I+ VVRCFE +DIVHV+G VDP
Sbjct: 62 RIVPTRIEFVDIAGLVAGASKGEGLGNQFLANIREVDAIVHVVRCFESDDIVHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMDGK 234
D++VINLEL +DL QIEKR+ + +K K KD+Q +L+ A A+ +GK
Sbjct: 122 VRDIEVINLELALADLSQIEKRIARTRKDAKKNKDAQVELELLERLEA------AINEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V LN+ E IK L LLT KPIIY NV+E DLA N V +V NLA +
Sbjct: 176 TVRQVDLNEDEEAIIKPLGLLTKKPIIYATNVSEEDLAT--GNQAVEKVRNLAEQENASV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISAQVE+EL EL EE+ ++L SLGV+E GL +LIR+TY LLGLRTY T+GE ET+AW
Sbjct: 234 VVISAQVESELIELSEEEKTDFLDSLGVTEGGLQSLIRATYDLLGLRTYLTTGETETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIRAGM APQAAGVIHSDFE+GFIRAET++Y+ SLAAAREKGL+
Sbjct: 294 TIRAGMKAPQAAGVIHSDFERGFIRAETISYEKLAEIQSLAAAREKGLI 342
>gi|319651084|ref|ZP_08005218.1| YyaF protein [Bacillus sp. 2_A_57_CT2]
gi|317397254|gb|EFV77958.1| YyaF protein [Bacillus sp. 2_A_57_CT2]
Length = 366
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/352 (58%), Positives = 265/352 (75%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLNKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++VINLEL+ +DL+ +EKR+ KL K K KDS +L+ LEK+++A
Sbjct: 120 DPIDDIEVINLELILADLESVEKRIGRVSKLAKQKDKDSVFELE------ILEKLKEAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR+V + + +K L LLT+KP++YVANV+E D+ADP SN +V +V A+
Sbjct: 174 ADKPARTVEFTEEQMKLVKGLHLLTIKPVLYVANVSEDDVADPSSNEYVQQVKEFAAKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E
Sbjct: 234 AEVIVICAKIESEIAELDGEEKEMFLQELGIEESGLDQLIRAAYNLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R GM APQ AGVIHSDFEKGFIRAETV+Y+D VAAG++ AA+E G V
Sbjct: 294 RAWTFRKGMKAPQCAGVIHSDFEKGFIRAETVSYEDLVAAGNMTAAKEAGKV 345
>gi|291459283|ref|ZP_06598673.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291418537|gb|EFE92256.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 365
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/349 (59%), Positives = 264/349 (75%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PFCTI+PNVG+VAVPD RLH+LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITRAG-AEAANYPFCTIDPNVGVVAVPDERLHLLSELYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IRE D+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIRETDAIVHVVRCFEDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDLD +E+RM+KLKK D ++K AE L ++ Q L GK A
Sbjct: 120 LRDIETINLELIFSDLDLLERRMQKLKKLSQNDKEAK----AELMLLSELYQYLESGKLA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
D ++++ + L LLT KP+IY NV+E L+D G+ NPHV +V A + SG
Sbjct: 176 IGFDAGDEDKNAFVDSLDLLTRKPVIYACNVSEDSLSDDGTGNPHVQKVRGYAKETGSGV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
ISAQ+E E++ELP EER EYL SLG+SESGL ++R++YSLLGL ++ T+GEKE++AW
Sbjct: 236 FVISAQIEQEISELPEEERTEYLESLGLSESGLDKIVRASYSLLGLMSFLTAGEKESRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFI+AE V Y D + SL+AAREKGLV
Sbjct: 296 TIKKGTKAPQAAGKIHSDFERGFIKAEVVNYKDLLDLKSLSAAREKGLV 344
>gi|425468895|ref|ZP_18847876.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9701]
gi|389884450|emb|CCI35259.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9701]
Length = 375
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 274/348 (78%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 134 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 188
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 189 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 246
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 247 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 306
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I AGM APQAAGVIHSDFE+GFIRAETV+Y D V + +++AA+EKGLV
Sbjct: 307 IIAGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSRTMSAAKEKGLV 354
>gi|159026846|emb|CAO89097.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 363
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/348 (62%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ LEKI L DG
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELVILEKILICLNDGIS 176
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KP+IY ANV+E DLA N V V +A + Q+ V
Sbjct: 177 ARKVDLSKEEEELIKNLGLLSRKPVIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVV 234
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 235 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIQATYELLGLRTYLTTGPQETRAWT 294
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 295 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 342
>gi|335039039|ref|ZP_08532227.1| GTP-binding protein YchF [Caldalkalibacillus thermarum TA2.A1]
gi|334181076|gb|EGL83653.1| GTP-binding protein YchF [Caldalkalibacillus thermarum TA2.A1]
Length = 365
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 266/347 (76%), Gaps = 4/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV +PD RL L+ + +Q
Sbjct: 2 LKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVQIPDHRLEKLAEIVHTQ 60
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P + EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I VVRCFED +I HV G+VDP
Sbjct: 61 RIIPTAYEFVDIAGLVKGASRGEGLGNKFLANIREVDAIAHVVRCFEDENITHVAGQVDP 120
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
+D++ INLEL+ +DL+ +EKRM +++K AK K+ E LE+++QA G+ A
Sbjct: 121 IADIETINLELILADLETVEKRMTRVQK-MAKSGDKTAKQQLE--VLEQLKQAFEQGQTA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS+ L++ E IK+L LLT+KP++YVANV+E ++ +NPHV V + A+ + VT
Sbjct: 178 RSLNLSEEEEHLIKELHLLTLKPVLYVANVSEGEIGQEENNPHVQRVKDYAAHDLAEVVT 237
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
I A+VEAE+ EL E++V +L LG+ ESGL LI++TY LLGL T+FT+GEKE +AWTI
Sbjct: 238 ICAKVEAEIAELEGEDKVLFLEELGIQESGLDQLIKATYKLLGLATFFTAGEKEVRAWTI 297
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE + Y+D VAAGS+A AREKGL+
Sbjct: 298 KEGTKAPQAAGKIHSDFEKGFIRAEVIHYNDLVAAGSMAEAREKGLL 344
>gi|422302980|ref|ZP_16390337.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9806]
gi|389792104|emb|CCI12135.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9806]
Length = 375
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/348 (63%), Positives = 275/348 (79%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 134 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 188
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V
Sbjct: 189 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVV 246
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 247 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 306
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V + +++AA+EKGLV
Sbjct: 307 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSRTMSAAKEKGLV 354
>gi|261409699|ref|YP_003245940.1| GTP-binding protein YchF [Paenibacillus sp. Y412MC10]
gi|261286162|gb|ACX68133.1| GTP-binding protein YchF [Paenibacillus sp. Y412MC10]
Length = 366
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/347 (57%), Positives = 268/347 (77%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +DLD +EKR+++ KK K + ++ E LE++++AL + +
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIDRAKK-NMKGGNKQYAQEVE--LLERLKEALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ ++ L LLT+KP++Y AN++E +A+ SNP+V +V + A+ +
Sbjct: 177 PARSVELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAGVIH+DFE+GFIRAE VAYDD VAAGS+ A+E+G
Sbjct: 297 TIRKGTKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERG 343
>gi|452823454|gb|EME30464.1| GTP-binding protein [Galdieria sulphuraria]
Length = 422
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/365 (57%), Positives = 264/365 (72%), Gaps = 9/365 (2%)
Query: 41 TSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100
+S RRR ++S ISM+L++GIVGLPNVGKSTLFNA+++N AQ ANFPFCTIEPNVGIV
Sbjct: 44 SSKRRRLHTSSLISMTLKSGIVGLPNVGKSTLFNALLQNSVAQCANFPFCTIEPNVGIVP 103
Query: 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR 160
VPDPRL VL L+ S+K +P +EF+DIAGLV GAS+GEGLGN+FL+++RE D+IL VVR
Sbjct: 104 VPDPRLEVLQKLNHSEKVIPTFLEFIDIAGLVAGASKGEGLGNRFLANVRECDAILHVVR 163
Query: 161 CFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK 220
CFE DIVHV G VDP DVD+IN EL +D QIEK++E++K+ +A DS++ L E
Sbjct: 164 CFESEDIVHVIGSVDPLRDVDIINTELSLADFAQIEKKLERMKRNRA-DSKTTL----EV 218
Query: 221 AALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 280
ALE+ + AL G R+V E+ + L LLT+KP++Y ANV+E LA NP
Sbjct: 219 EALERAKAALDTGCLLRNVNFTSQEKAFLVPLQLLTLKPVLYAANVSEESLAT--GNPFT 276
Query: 281 NEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSES--GLGNLIRSTYSLL 338
V A + + V +SAQVE+EL L +E+VEYL LGV GL L+R Y+LL
Sbjct: 277 QLVFRRAREENASAVVVSAQVESELASLSEQEKVEYLRILGVQRERIGLCLLVREMYTLL 336
Query: 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAR 398
GL TYFTSG KET+AWTI+ G APQAAG+IHSDFE+GFIRAET++YD VA GS AR
Sbjct: 337 GLETYFTSGPKETRAWTIKKGTKAPQAAGLIHSDFERGFIRAETISYDQMVAVGSEKKAR 396
Query: 399 EKGLV 403
E+GL+
Sbjct: 397 EQGLI 401
>gi|336237207|ref|YP_004589823.1| GTP-binding protein YchF [Geobacillus thermoglucosidasius C56-YS93]
gi|423721701|ref|ZP_17695883.1| GTP-binding protein (GTPase) [Geobacillus thermoglucosidans
TNO-09.020]
gi|335364062|gb|AEH49742.1| GTP-binding protein YchF [Geobacillus thermoglucosidasius C56-YS93]
gi|383365504|gb|EID42800.1| GTP-binding protein (GTPase) [Geobacillus thermoglucosidans
TNO-09.020]
Length = 366
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/370 (53%), Positives = 269/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL VL+ +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKVLTEMFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFTDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD + L+ D L ++++ G
Sbjct: 120 DPLADIETINLELIFADLETVDKRIDRVGKIAKQKDKDAMLEYDI----LMRLKETFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+++ + E +KQL LLT+KP++YVANV E D+A+P +NP V +V A +
Sbjct: 176 KPARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDVANPDANPFVQQVREFAQSDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ +L EE+ +L LG+ +SGL LIR++Y+LLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAQLEDEEKELFLQELGIEQSGLDQLIRASYNLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM AP+ AG+IHSDFE+GFIRAETV+Y+D VAAGS+AAARE G + Y
Sbjct: 296 WTFRRGMKAPECAGIIHSDFERGFIRAETVSYEDLVAAGSMAAAREAGKIRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 356 DGDIIYFRFN 365
>gi|312112741|ref|YP_003991057.1| GTP-binding protein YchF [Geobacillus sp. Y4.1MC1]
gi|311217842|gb|ADP76446.1| GTP-binding protein YchF [Geobacillus sp. Y4.1MC1]
Length = 366
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 269/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL VL+ +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKVLTEMFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFTDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD + L+ D L ++++ G
Sbjct: 120 DPLADIETINLELIFADLETVDKRIDRVGKIAKQKDKDAMLEYDI----LMRLKETFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+++ + E +KQL LLT+KP++YVAN+ E D+A+P +NP V +V A +
Sbjct: 176 KPARTLSFTEEEMKVVKQLHLLTIKPMLYVANIGEEDVANPDANPFVQQVREFAQSDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ +L EE+ +L LG+ +SGL LIR++Y+LLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAQLEDEEKELFLQELGIEQSGLDQLIRASYNLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM AP+ AG+IHSDFE+GFIRAETV+Y+D VAAGS+AAARE G + Y
Sbjct: 296 WTFRRGMKAPECAGIIHSDFERGFIRAETVSYEDLVAAGSMAAAREAGKIRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 356 DGDIIYFRFN 365
>gi|425452677|ref|ZP_18832493.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 7941]
gi|389765420|emb|CCI08674.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 7941]
Length = 380
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/348 (63%), Positives = 274/348 (78%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKP 235
D++VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ A LEKI L DG
Sbjct: 139 ARDIEVINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELAILEKILICLNDGIS 193
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V
Sbjct: 194 ARKVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVV 251
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWT
Sbjct: 252 IVSAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWT 311
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I +GM APQAAGVIHSDFE+GFIRAETV+Y D V + +++AA+EKGLV
Sbjct: 312 IISGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSRTMSAAKEKGLV 359
>gi|337744393|ref|YP_004638555.1| protein EngD [Paenibacillus mucilaginosus KNP414]
gi|379718040|ref|YP_005310171.1| protein EngD [Paenibacillus mucilaginosus 3016]
gi|386720595|ref|YP_006186920.1| GTP-binding protein YchF [Paenibacillus mucilaginosus K02]
gi|336295582|gb|AEI38685.1| EngD [Paenibacillus mucilaginosus KNP414]
gi|378566712|gb|AFC27022.1| EngD [Paenibacillus mucilaginosus 3016]
gi|384087719|gb|AFH59155.1| GTP-binding protein YchF [Paenibacillus mucilaginosus K02]
Length = 366
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/349 (56%), Positives = 269/349 (77%), Gaps = 4/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLEGLAKIVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EF+DIAG+VKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D +I HV+GKV
Sbjct: 60 PNRIVPTAFEFIDIAGIVKGASKGEGLGNKFLSHIREVDAIVHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD++ INLEL+ +D+D +++++E+ +K K K+ ++ E LEK+++AL + K
Sbjct: 120 DPISDIETINLELILADVDSVDRKIERSRK-NLKGGDKKVAQEVE--TLEKVKEALYNDK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ L D E+ I+ L LLTMKP++Y ANV+E+++A+ NP+V +V A+ +
Sbjct: 177 PARSLDLTDEEKLLIRDLHLLTMKPVLYAANVSEAEVANSDDNPYVQKVREYAAAENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGLG LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKAMFLEELGLQESGLGRLIKAAYKLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIR GM APQAAGVIH+DFE+GFIRAE V Y+D +GS+ AA+EKGL+
Sbjct: 297 TIRKGMKAPQAAGVIHTDFERGFIRAEVVGYEDLTNSGSMNAAKEKGLL 345
>gi|430751991|ref|YP_007214899.1| GTPase [Thermobacillus composti KWC4]
gi|430735956|gb|AGA59901.1| putative GTPase, probable translation factor [Thermobacillus
composti KWC4]
Length = 366
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 265/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L K
Sbjct: 1 MGLKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VP + EFVDIAGLV GAS+GEGLGNKFL+HIREVD+I+ VVRCF+D +I HV+GKV
Sbjct: 60 PQRKVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ INLEL+ +DL+ +E+R+E+ +K K + K ++ + LE+I++AL + +
Sbjct: 120 DPLSDIATINLELILADLETVERRLERARK-NTKSGEKKYIQEVQ--VLERIREALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ ++ L L+T KP++Y ANV+ES+ A+ NP V V A +
Sbjct: 177 PARSVELDDDEKLLVRDLHLITSKPVLYAANVSESEAANADGNPLVQAVRAYAESEGAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL+TYFT+GE+E +AW
Sbjct: 237 VPISAKVEAEIAELDGEDKALFLEELGIKESGLDRLIKAAYKLLGLQTYFTAGEQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAGVIHSDFE+GFIRAE V+Y+DFVAAGS+ A RE+G
Sbjct: 297 TIRKGTKAPQAAGVIHSDFERGFIRAEVVSYEDFVAAGSMNAVRERG 343
>gi|124026292|ref|YP_001015408.1| translation-associated GTPase [Prochlorococcus marinus str. NATL1A]
gi|123961360|gb|ABM76143.1| probable GTP-binding protein [Prochlorococcus marinus str. NATL1A]
Length = 363
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/351 (61%), Positives = 266/351 (75%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL++L LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVSVPDQRLNLLGELSNSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ V+RCF D+D++HV+G VDP
Sbjct: 62 QIIPTRMEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVIRCFRDDDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL SDL+QIEKR +LKK + ++KL++D LEK+ +AL +
Sbjct: 122 SRDIEIINLELALSDLNQIEKRRTRLKKQISTIKEAKLEDD----VLEKLSEALENENAV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV+L D E+ IK L LLT KPIIY N+ E +LA N +EV LA+ S V
Sbjct: 178 RSVSLTDEEKKLIKPLGLLTEKPIIYATNLGEDELAK--GNSFSDEVNTLATKEGSECVK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGV E GL +LI++TY LLGL TYFT+GEKETKAWTI
Sbjct: 236 ISAQVEAELIELGEEERDDYLNGLGVEEGGLISLIKATYRLLGLSTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
GMTAPQAAGVIH+DFEKGFIRA+T++Y + AGSL AR KG WL
Sbjct: 296 SDGMTAPQAAGVIHTDFEKGFIRAQTISYKKLLEAGSLVEARNKG---WLR 343
>gi|428182213|gb|EKX51074.1| hypothetical protein GUITHDRAFT_85091 [Guillardia theta CCMP2712]
Length = 455
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 268/354 (75%), Gaps = 9/354 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S L+ GIVGLPNVGKSTLFNA++ A+AANFPFCTIEPNVGIV VPDPRL VL+ +
Sbjct: 85 LSAKLQTGIVGLPNVGKSTLFNALLNKITAEAANFPFCTIEPNVGIVPVPDPRLEVLAKI 144
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S+S K VPA++EFVDIAG+VKGAS+G GLGNKFL++IRE D+I+ VVRCFED++++HV+G
Sbjct: 145 SESVKTVPATMEFVDIAGIVKGASEGAGLGNKFLANIRECDAIVHVVRCFEDDNVIHVDG 204
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALM 231
VDP D++VINLEL+ +DL Q+EKR+E+L++ + K ED E L KI+ L
Sbjct: 205 SVDPVRDMEVINLELILADLVQVEKRLERLERDMKR---VKKPEDVLEHGCLSKIKAQLD 261
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK AR+ +ND E+ SIK L LLT+KP+IY ANV +SDL+ N V +V A
Sbjct: 262 EGKAARTAKINDEEKLSIKSLGLLTLKPVIYAANVPDSDLST--GNTMVEKVKEQAGKEG 319
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSE---SGLGNLIRSTYSLLGLRTYFTSGE 348
+ V +SAQVE+E+ EL +EE+ E+L +LG+ + +GL L+R+ Y LLGLRTYFT+G
Sbjct: 320 AKVVLVSAQVESEMAELSAEEKAEFLQALGIEDPNATGLNALVRAAYELLGLRTYFTTGP 379
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
ET+AWTI AG APQAAGVIH DFE+GFIRAET++Y+D V++GS AARE GL
Sbjct: 380 TETRAWTITAGTKAPQAAGVIHQDFERGFIRAETISYNDLVSSGSEKAARENGL 433
>gi|374607103|ref|ZP_09679908.1| GTP-binding protein YchF [Paenibacillus dendritiformis C454]
gi|374387322|gb|EHQ58839.1| GTP-binding protein YchF [Paenibacillus dendritiformis C454]
Length = 366
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/347 (57%), Positives = 264/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +DL+ +EKR+++ KK K K ++AE LE++++ L + +
Sbjct: 120 NPVSDIQTINLELILADLESVEKRLDRTKK-NMKSGDKKFAQEAE--VLERLKEVLYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ L D E+ ++ L LLTMKP++Y ANV+E + D +NP+V +V + A+ +
Sbjct: 177 PARSLDLTDDEKLLVRDLHLLTMKPVLYAANVSEDGVTDADNNPYVQQVRDFAAQENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELDGEDKEMFLQELGLEESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR GM APQAAGVIH+DFE+GFIRAE V+YDD VAAGS+ +E+G
Sbjct: 297 TIRKGMKAPQAAGVIHTDFERGFIRAEVVSYDDLVAAGSMNVVKEQG 343
>gi|239828697|ref|YP_002951321.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus sp.
WCH70]
gi|239808990|gb|ACS26055.1| GTP-binding protein YchF [Geobacillus sp. WCH70]
Length = 366
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL VL+ + K
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKVLTEMFK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV G+V
Sbjct: 60 PQRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFTDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD + + D L ++++ G
Sbjct: 120 DPLADIETINLELIFADLETVDKRIDRVGKIAKQKDKDAVFEYDI----LVRLKETFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+++ + E +KQL LLT+KP++YVANV E D+A+P +NP V +V A +
Sbjct: 176 KPARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDVANPDANPFVKQVREFAKSDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ +L EE+ +L LG+ +SGL LIR++Y+LLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAQLDDEEKELFLQELGIQQSGLDQLIRASYNLLGLATFFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT R GM AP+ AG+IHSDFE+GFIRAETV+Y+D + AGS+AAARE G + Y
Sbjct: 296 WTFRRGMKAPECAGIIHSDFERGFIRAETVSYEDLITAGSMAAAREAGKIRLEGKDYEVQ 355
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 356 DGDIIYFRFN 365
>gi|399048526|ref|ZP_10740011.1| GTP-binding protein YchF [Brevibacillus sp. CF112]
gi|433543027|ref|ZP_20499442.1| GTP-binding protein YchF [Brevibacillus agri BAB-2500]
gi|398053588|gb|EJL45762.1| GTP-binding protein YchF [Brevibacillus sp. CF112]
gi|432185701|gb|ELK43187.1| GTP-binding protein YchF [Brevibacillus agri BAB-2500]
Length = 366
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/348 (58%), Positives = 262/348 (75%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL L+ +
Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLTKLTEIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I VVRCFED +I HV G+V
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASKGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+F+DLD +E+R++++ +K K+ D +SK + D LEK++ A +G
Sbjct: 120 DPLSDIETINLELIFADLDSVERRIDRIARKVKSGDKESKQELDV----LEKLKAAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARSV L+D ER I+ L LLT+KP++YV NVAE + D +NPHV V A+ +
Sbjct: 176 QSARSVELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADNNPHVQAVREHAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VEAE+ EL E++ +L LG++ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VVVISAKVEAEIAELEGEDKEMFLQELGLAESGLDRLIRAAYKLLGLVTYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G AP AAGVIH+DFE+GFIRAE +AYDD V AGS+AAARE+G
Sbjct: 296 WTIRKGTKAPGAAGVIHTDFERGFIRAEVIAYDDLVDAGSVAAARERG 343
>gi|443320028|ref|ZP_21049160.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 73106]
gi|442790260|gb|ELR99861.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 73106]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 270/347 (77%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+ +VPD RL VL+ LS S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVASVPDERLEVLAQLSSSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAITHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+EKR+E+ +K +A+ S+ + AE LEK++ AL GK
Sbjct: 122 VRDIEVINLELALADLSQVEKRIERARK-QARTSK---EAQAEVEVLEKVKIALDAGKSV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R + LN+ E + IK L LLT KPIIY ANV+E DLA N V V +A+ + V
Sbjct: 178 RMLNLNETESELIKPLGLLTHKPIIYAANVSEDDLAT--GNEWVEAVRQVAAIENAQVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL EL EER+++LASL V+E GL +LI++TY LLGLRTY T+G ET+AWTI
Sbjct: 236 VSAQVESELVELSEEERIDFLASLNVAEGGLKSLIKATYKLLGLRTYLTTGPTETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AGM APQAAGVIHSDFE+GFIRAET++Y D VA+G+ A+EKGL+
Sbjct: 296 QAGMKAPQAAGVIHSDFERGFIRAETISYQDLVASGNTNNAKEKGLL 342
>gi|315649893|ref|ZP_07902975.1| GTP-binding protein YchF [Paenibacillus vortex V453]
gi|315274692|gb|EFU38074.1| GTP-binding protein YchF [Paenibacillus vortex V453]
Length = 366
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/347 (57%), Positives = 267/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +DLD +EKR+++ KK K + ++ E LE++++AL + +
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIDRAKK-NMKGGNKQYAQEVE--LLERLKEALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ ++ L LLT+KP++Y AN++E +A+ SNP+V +V + A+ +
Sbjct: 177 PARSVELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAA VIH+DFE+GFIRAE VAYDD VAAGS+ A+E+G
Sbjct: 297 TIRKGTKAPQAAAVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERG 343
>gi|172036051|ref|YP_001802552.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp.
ATCC 51142]
gi|354552856|ref|ZP_08972163.1| GTP-binding protein YchF [Cyanothece sp. ATCC 51472]
gi|171697505|gb|ACB50486.1| GTP-dependent translation factor [Cyanothece sp. ATCC 51142]
gi|353554686|gb|EHC24075.1| GTP-binding protein YchF [Cyanothece sp. ATCC 51472]
Length = 363
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/349 (62%), Positives = 271/349 (77%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLGVLAELSQSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKA--ALEKIQQALMDGK 234
D++VINLEL +DL Q+EKR+E++KK Q K K+D ++ ALEKI L +GK
Sbjct: 122 ARDIEVINLELALADLAQMEKRLERVKK------QVKGKKDGQEEIIALEKIVAVLNEGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR V L + E IK L LLT KPIIY ANV+E DLA N V EV +A ++
Sbjct: 176 GARHVELTEEEEVLIKPLGLLTRKPIIYAANVSEDDLAT--GNDWVEEVRKIAETDRAKV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SAQVE+EL E+ EE+ +YL SLGV E GL +LI++TY LLGLRTY T+G +ET+AW
Sbjct: 234 VIVSAQVESELIEISEEEKADYLESLGVKEGGLQSLIQATYELLGLRTYLTTGPQETRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AGM APQAAGVIH+DFE+GFIRAET++Y+D VA ++ A+EKGLV
Sbjct: 294 TILAGMKAPQAAGVIHTDFERGFIRAETISYEDLVACKTMTVAKEKGLV 342
>gi|33240682|ref|NP_875624.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33238210|gb|AAQ00277.1| Predicted GTPase, probable translation factor [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 363
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 262/347 (75%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+ GIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL +L LS S+
Sbjct: 2 LKVGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDDRLKLLGALSDSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 62 ELVPTRIEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDENVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL SDL QIEKR E+LKK + +S++ E LEKI + G A
Sbjct: 122 VRDIEIINLELGLSDLSQIEKRRERLKKQIRNNKESQV----EDQILEKIHLEIEQGGVA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSVTL D ER IK L LLT KPIIY +N+ E +L+ N V LA + S V
Sbjct: 178 RSVTLLDEERQLIKPLGLLTAKPIIYASNLTEDELSL--GNVFSKNVKELAENESSENVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL ER +YLA LGV E GL +LI+++Y+LLGLRTYFT+GEKETKAWTI
Sbjct: 236 ISAQVEAELIELGEFERQDYLAGLGVQEGGLQSLIKASYNLLGLRTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+GMTAPQAAGVIH+DFE+GFIRA+T+ Y+ + AGSL A+ KG +
Sbjct: 296 NSGMTAPQAAGVIHTDFERGFIRAQTINYEKLLTAGSLLEAKNKGWI 342
>gi|333372825|ref|ZP_08464747.1| GTP-dependent nucleic acid-binding protein EngD [Desmospora sp.
8437]
gi|332971414|gb|EGK10372.1| GTP-dependent nucleic acid-binding protein EngD [Desmospora sp.
8437]
Length = 366
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/350 (57%), Positives = 267/350 (76%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ G A++AN+PFCTI+PNVG+V VPD R++ L+ +
Sbjct: 1 MSLTTGIVGLPNVGKSTLFNAITRAG-AESANYPFCTIDPNVGVVDVPDERMNRLAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VP S +F DIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFED++I HV+G V
Sbjct: 60 PQRIVPTSFQFTDIAGLVKGASKGEGLGNQFLSHIREVDAIIHVVRCFEDDNITHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGK-AKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLELV +DL+ +E+R++++ + K + D+++K E LEK+QQ L +G
Sbjct: 120 DPVGDMETINLELVLADLETVERRLDRVARQKRSGDAEAK----KEHEVLEKLQQTLAEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + L + E + I+ L LLT+K ++Y ANV+E D+ADP +NPHV + A +
Sbjct: 176 KPARGLNLEEEELERIRSLNLLTLKKMLYAANVSEEDVADPDANPHVGALRKQADAEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VTISAQ+EAE+ EL EER ++L+ LG+S SGL L+ + Y LLGL TYFT+GEKE +A
Sbjct: 236 VVTISAQLEAEIAELEGEERDQFLSELGLSASGLDRLVAAAYRLLGLITYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT+R G APQAAGVIHSDFE+GFIRAE V++ D V +GSLA ARE+GL+
Sbjct: 296 WTVRQGTRAPQAAGVIHSDFERGFIRAEVVSFTDLVQSGSLAGAREQGLL 345
>gi|415883897|ref|ZP_11545926.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
methanolicus MGA3]
gi|387591692|gb|EIJ84009.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
methanolicus MGA3]
Length = 366
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/352 (57%), Positives = 259/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD L L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDHSLTKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ INLEL+ +DL+ +EKR+ EK+ K K KD+ + + L ++ A
Sbjct: 120 DPIADIETINLELILADLETVEKRIGRVEKMAKQKDKDAIFEFE------ILSMLKDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR+V D + +K L LLT+KP++YVANV E D+ADP SN +V +V A
Sbjct: 174 SEKPARAVEFTDEQMKVVKGLHLLTIKPVLYVANVGEEDVADPSSNEYVQKVKKYAEKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A++E+E+ EL EE+ +L LG+ ESGL LIR YSLLGL TYFT+G +E
Sbjct: 234 AEVVVVCAKIESEIAELDGEEKAMFLQELGIEESGLDQLIRKAYSLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R GM APQ AG+IHSDFE+GFIRAETV+YDD +AAGS+AAARE G V
Sbjct: 294 RAWTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLLAAGSMAAAREAGKV 345
>gi|443477297|ref|ZP_21067154.1| GTP-binding protein YchF [Pseudanabaena biceps PCC 7429]
gi|443017593|gb|ELS31999.1| GTP-binding protein YchF [Pseudanabaena biceps PCC 7429]
Length = 363
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/347 (60%), Positives = 262/347 (75%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG V+VPD RL L+ + KS
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGSVSVPDDRLTTLAEVGKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLV+GAS+GEGLGN+FL +IR D+I+ VVRCFE++DI+HV +DP
Sbjct: 62 QIIPTRVEFVDIAGLVRGASKGEGLGNQFLGNIRVCDAIVHVVRCFENDDIIHVEASIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++I LEL SDL Q+++R+++ +K D+ +K+ E AALEK+++ L GKPA
Sbjct: 122 ARDIEIITLELALSDLAQVDRRIDRTRKAARADADAKV----ELAALEKVREILDAGKPA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R LND E+ +I L LLT+KP IY ANV+E DLA N V +V +A+ +
Sbjct: 178 RLANLNDEEKAAISVLQLLTLKPTIYAANVSEDDLAT--GNAFVEKVKAIAAAENAEVTI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL ELP EER ++L SLGV E GL +LIR+TY LLGLRTYFT G KE +AWTI
Sbjct: 236 VSAQVESELLELPDEERQDFLESLGVKEGGLKSLIRATYHLLGLRTYFTVGPKEARAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIHSDFEK FIRAETVA+ D V GS++AAR KGL+
Sbjct: 296 HAGMKAPQAAGVIHSDFEKAFIRAETVAFKDLVDCGSMSAARAKGLL 342
>gi|15616613|ref|NP_244919.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
halodurans C-125]
gi|10176676|dbj|BAB07770.1| GTP-binding protein [Bacillus halodurans C-125]
Length = 366
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL L+ L
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFDDENITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ VINLEL+ +DL+ ++KR +++K K KD ++ AE LEK++ A +
Sbjct: 120 DPIRDISVINLELILADLESVDKRFSRVQKLAKTKDKEAV----AELEVLEKLKDAFENE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ + ++ +K L LLT KP++YVANV+E D+ P NP V +V A++ S
Sbjct: 176 KPARSIEFTEEQQKIVKGLHLLTSKPVLYVANVSEDDVLSPDDNPFVQKVKAFAAEENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA++E E+ EL EE+ +L LG+ ESGL LIR+ YSLLGL+TYFT+GE+E +A
Sbjct: 236 VIVVSAKIEEEIAELDGEEKAMFLEELGIQESGLDQLIRAAYSLLGLQTYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G APQAAG+IHSDFEKGFIRAETV+Y+D V AGS+A A+E+G V
Sbjct: 296 WTFRKGTKAPQAAGIIHSDFEKGFIRAETVSYNDLVEAGSMAVAKERGKV 345
>gi|126658802|ref|ZP_01729946.1| translation-associated GTPase [Cyanothece sp. CCY0110]
gi|126619900|gb|EAZ90625.1| translation-associated GTPase [Cyanothece sp. CCY0110]
Length = 363
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/347 (61%), Positives = 266/347 (76%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLTVLAELSQSD 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KVVPTRMEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VINLEL +DL Q+EKR+E+++ K + K + E ALEKI AL +G A
Sbjct: 122 ARDIEVINLELALADLSQMEKRLERVQ----KQVKGKKEGQEEIVALEKIIAALNEGTGA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L+ E IK L LLT KPIIY ANV+E DLA N V EV +A + V
Sbjct: 178 RHVELSKEEEVLIKPLGLLTRKPIIYAANVSEDDLAT--GNDWVEEVRKIAEADNAKVVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVE+EL E+ EE+ +YL +LGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 236 VSAQVESELIEISEEEKADYLDALGVKEGGLQSLIKATYELLGLRTYLTTGPQETRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AGM APQAAGVIH+DFE+GFIRAET++Y+D VA ++ A+EKGLV
Sbjct: 296 FAGMKAPQAAGVIHTDFERGFIRAETISYEDLVACKTMTVAKEKGLV 342
>gi|134299143|ref|YP_001112639.1| GTP-binding protein YchF [Desulfotomaculum reducens MI-1]
gi|134051843|gb|ABO49814.1| GTP-binding protein YchF [Desulfotomaculum reducens MI-1]
Length = 367
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/349 (58%), Positives = 263/349 (75%), Gaps = 7/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL L+ L
Sbjct: 1 MPLKCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNVGVVTVPDHRLDKLTELVI 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I VVRCF D+DI HV+GK+
Sbjct: 60 PKKTIPTTFEFVDIAGLVKGASRGEGLGNKFLSHIREVDAIAHVVRCFIDDDITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQ-QALMD 232
DP +D++VINLELV +DL+ +E+R E+L K K++D Q+K+ E +++++ +AL
Sbjct: 120 DPINDIEVINLELVLADLESMERRQERLASKLKSQDKQAKI----EYQLIQRLKDEALAQ 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARS+ D E +K LLT+KPIIYV NV E+DL D N ++ +V A +
Sbjct: 176 GKPARSLEFTDEEMKIVKFFHLLTIKPIIYVTNVGENDLPDLEKNSYIQQVKEYAVQENA 235
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V +SAQ+E+E+ EL EE+ +L LG+ ESGL LIR++Y+LLGLRTYFT+G +E +
Sbjct: 236 TVVPVSAQLESEIAELQGEEKRLFLEELGLDESGLDKLIRASYNLLGLRTYFTAGVQEVR 295
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI AG APQAAGVIH+DFE+GFIRAE V+YDD V AGS+A ARE G
Sbjct: 296 AWTITAGTKAPQAAGVIHTDFERGFIRAEVVSYDDLVTAGSMAKAREAG 344
>gi|329929033|ref|ZP_08282835.1| GTP-binding protein YchF [Paenibacillus sp. HGF5]
gi|328937022|gb|EGG33451.1| GTP-binding protein YchF [Paenibacillus sp. HGF5]
Length = 366
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/347 (57%), Positives = 265/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MPLSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +DLD +EKR+++ KK K + ++ E LE++++AL + +
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIDRAKK-NMKGGNKQYAQEVE--LLERLKEALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ ++ L LLT+KP++Y AN++E +A+ SNP+V +V + A+ +
Sbjct: 177 PARSVELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAGVIH+DFE+GFIRAE VAYDD VAAGS+ A+E+G
Sbjct: 297 TIRKGTKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERG 343
>gi|452974083|gb|EME73905.1| GTP-binding protein YchF [Bacillus sonorensis L12]
Length = 366
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ E L K+++A
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVGKMAKQKDKEAVF----EFEILTKLKEAFEQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + + +KQL LLT KP++YVANV+E ++ADP N +V +V A+ +
Sbjct: 176 KPARSVEFTEEQHKVLKQLHLLTTKPVLYVANVSEDEVADPSGNEYVQKVREFAAAENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKAMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS++AA+E G V
Sbjct: 296 WTFKKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSMSAAKEAGKV 345
>gi|72382585|ref|YP_291940.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. NATL2A]
gi|72002435|gb|AAZ58237.1| Conserved hypothetical protein 92:GTP-binding protein
[Prochlorococcus marinus str. NATL2A]
Length = 363
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/351 (61%), Positives = 264/351 (75%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL++L LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVSVPDQRLNLLGELSNSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ V+RCF D+D++HV+G VDP
Sbjct: 62 QIIPTRMEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVIRCFSDDDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL SDL+QIEKR +LKK + +KL++D LEK+ +AL +
Sbjct: 122 SRDIEIINLELALSDLNQIEKRRTRLKKQISTSKDAKLEDD----VLEKLSEALENENAV 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV+L + E+ IK L LLT KPIIY N+ E +LA N EV LA+ S V
Sbjct: 178 RSVSLTNEEKKLIKPLGLLTEKPIIYATNLGEDELAK--GNSFSEEVNTLATKEGSECVK 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGV E GL +LI++TY LLGL TYFT+GEKETKAWTI
Sbjct: 236 ISAQVEAELIELGEEERDDYLNGLGVEEGGLISLIKATYRLLGLSTYFTTGEKETKAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
GMTAPQAAGVIH+DFEKGFIRA+T++Y + AGSL A+ KG WL
Sbjct: 296 SDGMTAPQAAGVIHTDFEKGFIRAQTISYKKLLEAGSLVEAKNKG---WLR 343
>gi|227499159|ref|ZP_03929294.1| GTP-binding protein ychF [Acidaminococcus sp. D21]
gi|226904606|gb|EEH90524.1| GTP-binding protein ychF [Acidaminococcus sp. D21]
Length = 369
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/379 (54%), Positives = 272/379 (71%), Gaps = 13/379 (3%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVGIV VPDPRL VLS L
Sbjct: 3 STNLEMGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGIVDVPDPRLQVLSDLY 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S++ VPA ++FVDIAGLVKGAS+GEGLGNKFLSHIR+ D+I +VVRCFED +I HV G
Sbjct: 62 HSKRIVPAGMKFVDIAGLVKGASKGEGLGNKFLSHIRQTDAIAEVVRCFEDGNITHVEGS 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMD 232
+DP D+++IN EL +DL+ +EK+ K++K K+ D + A+ A L ++ +AL D
Sbjct: 122 IDPIRDIEIINTELCLADLESVEKQQLKVQKLLKSGDKTAP----AKNALLTRLVEALGD 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR V + E++ I++L LLT+KPI+YVANV+E + AD NPHV + A +
Sbjct: 178 AKPARQVEMTKDEKEMIRELDLLTLKPILYVANVSEEEAADASGNPHVKALTEYAEKEGA 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+TISA+VE ++ LP++E EYL G++E+GL LI++ +SLLGL+T+ T+GE E++
Sbjct: 238 QVITISAKVEEDIASLPADEAKEYLEMEGLTEAGLDRLIKAGFSLLGLQTFLTAGEMESR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL 412
AWTI G TAPQAAG IHSDFEKGFIRAE V+YDD VA GS AAREKGLV L
Sbjct: 298 AWTIVKGFTAPQAAGKIHSDFEKGFIRAEIVSYDDLVACGSKQAAREKGLV-------RL 350
Query: 413 ASYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 351 EGKDYIMQDGDVVEFRFNV 369
>gi|403382952|ref|ZP_10925009.1| GTP-binding protein YchF [Paenibacillus sp. JC66]
Length = 366
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 263/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLQKLADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGAS+GEGLGNKFL+HIREVD+I+ VVRCF+D +I HV+GKV
Sbjct: 60 PNRIVPTAFEFVDIAGLVKGASKGEGLGNKFLAHIREVDAIVHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD++ INLEL+ +DLD +EKR+E+ +K K K+ AE LE+I+ AL++ K
Sbjct: 120 DPISDIETINLELILADLDSVEKRIERSRK-NMKGGDKKVA--AEVECLERIKTALLEEK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RSV L+D +R I+ L LLT+KPI+Y ANV+E + + N +V +V N A+ +
Sbjct: 177 PVRSVELSDEDRLLIRDLHLLTIKPILYAANVSEEEAGNADGNEYVEQVRNYAAKEGAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E+R +LA LG+ ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDREMFLAELGLQESGLDRLIRAAYKLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAA VIH+DFE+GFIRAE V+Y+D AAGS+ AA+E+G
Sbjct: 297 TIRKGTKAPQAAAVIHTDFERGFIRAEVVSYEDLTAAGSMNAAKERG 343
>gi|52082637|ref|YP_081428.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319648503|ref|ZP_08002719.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
BT1B_CT2]
gi|404491517|ref|YP_006715623.1| GTP-binding protein YchF [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680372|ref|ZP_17655211.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis WX-02]
gi|52005848|gb|AAU25790.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|52350538|gb|AAU43172.1| GTP-dependent nucleic acid-binding protein YyaF [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317389582|gb|EFV70393.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
BT1B_CT2]
gi|383441478|gb|EID49187.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis WX-02]
Length = 366
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 263/350 (75%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ E L K+++A
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVGKMAKQKDKEAVF----EFEILTKLKEAFEQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV ++ ++ +KQL LLT KP++YVANV+E ++ADP N +V +V A+ +
Sbjct: 176 KPARSVEFSEEQQKVLKQLHLLTTKPVLYVANVSEDEVADPSGNEYVQKVREFAAAENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKAMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IH+DFE+GFIRAETVAYDD + AGS+ AA+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHTDFERGFIRAETVAYDDLLEAGSMTAAKEAGKV 345
>gi|403743974|ref|ZP_10953453.1| GTP-binding protein YchF [Alicyclobacillus hesperidum URH17-3-68]
gi|403122564|gb|EJY56778.1| GTP-binding protein YchF [Alicyclobacillus hesperidum URH17-3-68]
Length = 393
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/352 (59%), Positives = 262/352 (74%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
++M L+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPDPRL L+ +
Sbjct: 26 VNMPLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVPDPRLQKLAEI 84
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
++ VP + EFVDIAGLVKGASQGEGLGN+FL HIREVD+I+ VVRCFE+ DI HV+G
Sbjct: 85 VHPKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLGHIREVDAIVHVVRCFENGDITHVSG 144
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231
VDP D++ I+LEL+ +DL+ ++KR+E+ KK K+ D + KL E ALE+I AL
Sbjct: 145 SVDPIRDIETIDLELILADLETVQKRLERTKKNMKSGDKRFKL----EAEALERIAAALE 200
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
G+ ARSV LND E+ ++ L LLT KP++YVANV E D AD N HV V A
Sbjct: 201 AGQAARSVELNDEEQALLRDLHLLTRKPVLYVANVGEEDAADSSDNVHVKAVEARAETEG 260
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + AQ+E+E+ EL E+R +L+ LG+SE+GL LIR Y LLGLRTYFT+GE E
Sbjct: 261 AQVVVVCAQLESEIAELEGEDRDAFLSDLGLSEAGLDRLIRKAYQLLGLRTYFTAGEPEV 320
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTIR G APQAAGVIHSDFE+GFIRAE VAY+D +AAGS ARE+G V
Sbjct: 321 RAWTIRTGTKAPQAAGVIHSDFERGFIRAEVVAYEDLIAAGSYQVAREQGKV 372
>gi|339006739|ref|ZP_08639314.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
laterosporus LMG 15441]
gi|338775948|gb|EGP35476.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
laterosporus LMG 15441]
Length = 366
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/348 (58%), Positives = 261/348 (75%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL+ L+ +
Sbjct: 1 MGMSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLNKLTEIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL+HIREVD+I QVVRCFED +IVHV GKV
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASKGEGLGNQFLAHIREVDAIAQVVRCFEDQNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLELVF+DLD + +R++++ +K K+ D ++K+ E LEK++ A +G
Sbjct: 120 DPLSDIETINLELVFADLDSVTRRIDRMGRKAKSGDKEAKV----ELEVLEKLKAAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ AR V L + E I+ L LLT+KP++YV NVAE + + NPHV V A +
Sbjct: 176 QAARGVELTEDELKIIRDLHLLTIKPMLYVCNVAEDGIHNADENPHVQAVRKHAESEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE+E+ EL E++ +L LG+ ESGL LIR+ YSLLGL TYFT+G +E +A
Sbjct: 236 VVIISAKVESEIAELEGEDKEMFLEELGLQESGLDRLIRAAYSLLGLITYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R APQAAGVIH+DFE+GFIRAE VAYDD VAAG++ AAREKG
Sbjct: 296 WTVRRETKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGNVNAAREKG 343
>gi|37522802|ref|NP_926179.1| GTP-dependent nucleic acid-binding protein EngD [Gloeobacter
violaceus PCC 7421]
gi|35213804|dbj|BAC91174.1| gll3233 [Gloeobacter violaceus PCC 7421]
Length = 364
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/347 (61%), Positives = 260/347 (74%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+ GIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN G+V VPD RL +L+ + +
Sbjct: 2 LKTGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNTGVVNVPDERLGILARIVSTS 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA +E+VDIAGLV+GASQGEGLGN+FLSHIR+VD+++ VVRCFE DI+HV G VDP
Sbjct: 62 TIIPARIEYVDIAGLVRGASQGEGLGNQFLSHIRQVDALVHVVRCFESTDIIHVEGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+ INLEL SDL Q++KR++K+ K K SK + E +ALEKI L +GKPA
Sbjct: 122 VRDISTINLELALSDLGQVDKRLQKIAKQKGT---SKDQYAVESSALEKITAVLNEGKPA 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS L D E++++ L LLT KP+IY ANV+E +LA N +V +A++ + V
Sbjct: 179 RSCALTDAEKETVVPLELLTFKPVIYAANVSEEELAT--GNRFTEQVAAIAAEESALMVV 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQ+EAEL EL EER YL LGVS+SGL +IR+TY LLGL+T+FT+GEKE +AWTI
Sbjct: 237 ISAQLEAELAELEPEERSAYLTDLGVSDSGLQKMIRATYDLLGLQTFFTAGEKEVRAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G TAPQAAG IH+DFE+GFIRAETVAY D V AGS AAREKG V
Sbjct: 297 TRGTTAPQAAGTIHTDFERGFIRAETVAYPDLVTAGSQVAAREKGQV 343
>gi|345020631|ref|ZP_08784244.1| GTP-binding protein YchF [Ornithinibacillus scapharcae TW25]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/352 (56%), Positives = 264/352 (75%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGMVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICQVVRCFVDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+++INLEL+ +DL+ + KR+ EKL K K KD+ E L KI+ L
Sbjct: 120 DPIDDIEIINLELILADLETVNKRIQRVEKLAKQKDKDAL------VEYEVLSKIKTGLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ D ++ +K L LLT KP++YVANV E ++ADP +NP+V +V + A+
Sbjct: 174 EEKPARALEFTDEQQKLVKGLHLLTSKPMLYVANVGEDEVADPDANPNVQKVRDYAAKEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E E++EL +E+ +L LG+SESGL LI+++YSLLGL TYFT+GE+E
Sbjct: 234 AEVIVICARIEEEISELDQDEKEMFLEELGISESGLDKLIKASYSLLGLATYFTAGEQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R G+ APQAAG+IHSDFE+GFIRAETV+YDD + AGS+ AREKG V
Sbjct: 294 RAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYDDLLEAGSMVHAREKGKV 345
>gi|149182307|ref|ZP_01860786.1| translation-associated GTPase [Bacillus sp. SG-1]
gi|148849999|gb|EDL64170.1| translation-associated GTPase [Bacillus sp. SG-1]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGIVEVPDYRLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VINLEL+ +DL+ ++KR+ +++K K KD ++ E L K+++A +G
Sbjct: 120 NPLDDIEVINLELILADLESVDKRIARVQKLAKQKDKEAAY----EHEILLKLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V + + +K L LLT+KP++YVANV+E D+ADP N +V +V A +
Sbjct: 176 RPARTVEFTEEQMKVVKGLHLLTIKPVLYVANVSEDDIADPSDNEYVQQVREFAKGDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDDEEKAMFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM AP+ AG+IH+DFEKGFIRAETV+YDD VA G++ AARE G V
Sbjct: 296 WTFRTGMKAPECAGIIHTDFEKGFIRAETVSYDDLVANGTMGAAREAGKV 345
>gi|354559377|ref|ZP_08978627.1| GTP-binding protein YchF [Desulfitobacterium metallireducens DSM
15288]
gi|353542966|gb|EHC12426.1| GTP-binding protein YchF [Desulfitobacterium metallireducens DSM
15288]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 263/350 (75%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL VL+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVHVPDSRLGVLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D++++HV G V
Sbjct: 60 PDRIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDSNVIHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DPK D++ I LEL+ +DL+ IEKR+EK +K K+ D ++ + E L K+++A +G
Sbjct: 120 DPKRDIETIQLELILADLESIEKRLEKSEKLLKSGDKKAHV----EVELLTKLKEAFDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARS++ D E++ +K + LL+MKPI+Y ANV+E DL N +V +V +A++ S
Sbjct: 176 KAARSLSYTDEEKEILKTISLLSMKPILYAANVSEEDLTRGEENSYVQKVREIATEENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A++E+E+ EL EE+ +L LG+ ESGL LIR+ + LLGL T+FT+G E KA
Sbjct: 236 VVMVCAKIESEIAELEDEEKQAFLEDLGLEESGLDRLIRAAFHLLGLMTFFTAGPMEVKA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTIR G APQAAG IH+DFE+GFIRAE V+Y DFVA G L AR+KGLV
Sbjct: 296 WTIRRGTKAPQAAGTIHTDFERGFIRAEVVSYSDFVAMGGLNGARDKGLV 345
>gi|403385763|ref|ZP_10927820.1| GTP-dependent nucleic acid-binding protein [Kurthia sp. JC30]
Length = 366
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/378 (54%), Positives = 269/378 (71%), Gaps = 13/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGASQGEGLGNKFLSHIREVD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASQGEGLGNKFLSHIREVDAITQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VINLEL+ +DL+ ++KR K+ K K KD +S AE A LEK+++A +
Sbjct: 120 DPISDIEVINLELILADLESVDKRYAKVSKLAKQKDKESM----AEAAVLEKVKEAFANE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PARSV L+D E+ IK L LLT+KP +YVANV+E ++A+ N +V +V A+ +
Sbjct: 176 MPARSVDLDDEEKKIIKGLSLLTLKPALYVANVSEDEVANAEDNEYVKQVREYAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ +L EE+ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAQLDDEEKAMFLEELGIEESGLDKLIKAAYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT R GM APQ AG+IHSDFE+GFIRAETV+++D V GS AA+E G + L
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVSFEDLVEYGSKTAAKEAGRL-------RLE 348
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 349 GKEYVVKDGDVMEFLFNV 366
>gi|254479533|ref|ZP_05092852.1| GTP-binding protein YchF [Carboxydibrachium pacificum DSM 12653]
gi|214034535|gb|EEB75290.1| GTP-binding protein YchF [Carboxydibrachium pacificum DSM 12653]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 253/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVVPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++INLEL+ +DL+ +E+RM+K K D ++ E LEKI+ L +GKPA
Sbjct: 120 VRDVEIINLELILADLETVERRMQKTSKLARNDKKAAF----ELEVLEKIKNTLEEGKPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ N+ E+ QL LLT KP++YVAN++E DL N HV ++ A S +
Sbjct: 176 RTIQFNEEEKAIANQLMLLTSKPVMYVANISEEDLISGEENLHVKKLREYALKEGSEVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL LP EER E L G+ E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELAALPDEERNELLKEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFE+GFIRAE ++++D V AGS AAARE GL+
Sbjct: 296 KRGTKAPQAAGKIHSDFERGFIRAEVISFEDLVKAGSQAAAREMGLL 342
>gi|392956538|ref|ZP_10322065.1| GTP-binding protein YchF [Bacillus macauensis ZFHKF-1]
gi|391877520|gb|EIT86113.1| GTP-binding protein YchF [Bacillus macauensis ZFHKF-1]
Length = 365
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/350 (58%), Positives = 271/350 (77%), Gaps = 7/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RLH L+ + +
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLHKLTEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+ILQVVRCFED +I HV+GKV
Sbjct: 60 PKKVVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAILQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL+F+DL+ +EKR+ +++K K+KD ++ AE + LEKI++AL +
Sbjct: 120 DPIDDIEVINLELIFADLETVEKRVARVEKLAKSKDKEAV----AEFSVLEKIKEALSNE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PARSV L E+ + L LLTMKPI+Y ANV+E DL + G N HV++V + A+ Q+
Sbjct: 176 LPARSVDLTPEEKKIVYGLHLLTMKPILYAANVSEEDLLE-GGNEHVDKVRDYAAREQAE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E+ EL EE++ +L LG+ E+GL LIR++YSLLGL TYFT+G +E +A
Sbjct: 235 VIVICAKIEEEIAELEGEEKIAFLEELGIQEAGLDQLIRASYSLLGLATYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAE VAYDD + AG++ AA+EKG V
Sbjct: 295 WTFRKGMKAPQCAGIIHTDFERGFIRAEVVAYDDLMEAGNMGAAKEKGKV 344
>gi|357013940|ref|ZP_09078939.1| GTP-binding protein YchF [Paenibacillus elgii B69]
Length = 366
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 263/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDRLAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGAS+GEGLGNKFL+HIREVD+I+ VVRCF+D +I HV+G V
Sbjct: 60 PNRIVPTAFEFVDIAGLVKGASKGEGLGNKFLAHIREVDAIVHVVRCFQDENITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD++ INLEL+ +D+D ++KR+++ +K K K ++ E LE+I++AL + K
Sbjct: 120 DPISDIETINLELILADVDSVDKRIDRSRK-NMKGGDKKYAQEVE--TLERIKEALYNDK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ I+ L LLTMKP++Y ANV+ES++AD NP+V +V A+ +
Sbjct: 177 PARSVELSDEEKLLIRDLHLLTMKPVLYAANVSESEVADAEGNPYVQKVREYAALEGAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E++ +L LG+ ESGL LI+ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDKAMFLEELGLQESGLNRLIKGAYKLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAA VIH+DFE+GFIRAE V YDD + +GS+ AA+EKG
Sbjct: 297 TIRMGTKAPQAAAVIHTDFERGFIRAEVVGYDDLIGSGSMNAAKEKG 343
>gi|352685650|ref|YP_004897635.1| GTP-binding protein ychF [Acidaminococcus intestini RyC-MR95]
gi|350280305|gb|AEQ23495.1| GTP-binding protein ychF [Acidaminococcus intestini RyC-MR95]
Length = 362
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/373 (54%), Positives = 269/373 (72%), Gaps = 13/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVGIV VPDPRL VLS L S++ V
Sbjct: 2 GIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGIVDVPDPRLQVLSDLYHSKRIV 60
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA ++FVDIAGLVKGAS+GEGLGNKFLSHIR+ D+I +VVRCFED +I HV G +DP D
Sbjct: 61 PAGMKFVDIAGLVKGASKGEGLGNKFLSHIRQTDAIAEVVRCFEDGNITHVEGSIDPIRD 120
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
+++IN EL +DL+ +EK+ K++K K+ D + A+ A L ++ +AL D KPAR
Sbjct: 121 IEIINTELCLADLESVEKQQLKVQKLLKSGDKTAP----AKNALLTRLVEALGDAKPARQ 176
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
V + E++ I++L LLT+KPI+YVANV+E + AD NPHV + A + +TIS
Sbjct: 177 VEMTKDEKEMIRELDLLTLKPILYVANVSEEEAADASGNPHVKALTEYAEKEGAQVITIS 236
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VE ++ LP++E EYL G++E+GL LI++ +SLLGL+T+ T+GE E++AWTI
Sbjct: 237 AKVEEDIASLPADEAKEYLEMEGLTEAGLDRLIKAGFSLLGLQTFLTAGEMESRAWTIVK 296
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAPQAAG IHSDFEKGFIRAE V+YDD VA GS AAREKGLV L Y
Sbjct: 297 GFTAPQAAGKIHSDFEKGFIRAEIVSYDDLVACGSKQAAREKGLV-------RLEGKDYI 349
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 350 MQDGDVVEFRFNV 362
>gi|389574628|ref|ZP_10164688.1| GTP-binding protein YchF [Bacillus sp. M 2-6]
gi|388425750|gb|EIL83575.1| GTP-binding protein YchF [Bacillus sp. M 2-6]
Length = 366
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 263/350 (75%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE LEK++ A G
Sbjct: 120 DPVSDIETINLELILADLETVEKRLTRVSKLAKQKDKEAV----AEFDILEKLKDAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARSV D ++ +KQL LLT KPI+YVANV+E ++AD N +V ++ AS +
Sbjct: 176 KSARSVEFTDEQQKLVKQLHLLTSKPILYVANVSEDEVADQDGNEYVQQIREFASGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKV 345
>gi|88808999|ref|ZP_01124508.1| hypothetical protein WH7805_04886 [Synechococcus sp. WH 7805]
gi|88786941|gb|EAR18099.1| hypothetical protein WH7805_04886 [Synechococcus sp. WH 7805]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/351 (63%), Positives = 267/351 (76%), Gaps = 9/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +LS LS S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDSRLQLLSDLSSSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 EIIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGAVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL QIEKR E+LKK + + S+ ED AALE+IQ L G A
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKK-QVRTSKEAQVED---AALERIQVVLEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV L+D E +K L LLT KPIIY NV+E DLA N E++ LA+ + V
Sbjct: 178 RSVELSDEEALMVKPLGLLTAKPIIYATNVSEDDLA--AGNAFCEEIVALAAKEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGV+E GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELVELGDEERQDYLDGLGVTEGGLQSLIRATYRLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLH 407
+AGMTAPQAAGVIH+DFE+GFIRA+T++ D + AGSL AR KG WL
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTISTDKLLEAGSLVEARNKG---WLR 343
>gi|148239951|ref|YP_001225338.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
WH 7803]
gi|147848490|emb|CAK24041.1| Predicted GTPase [Synechococcus sp. WH 7803]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/375 (59%), Positives = 275/375 (73%), Gaps = 13/375 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +LS LS S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDSRLELLSDLSSSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 ETIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGAVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D +VINLEL +DL Q+EKR E+LKK ++++ E AALE+IQ L G A
Sbjct: 122 ARDAEVINLELGLADLAQLEKRRERLKKQMRTSKEAQI----EDAALERIQAVLEQGGAA 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RSV L++ E +K L LLT KPIIY NV+E DLA G N E++ LA+ + V
Sbjct: 178 RSVELSEEEALMLKPLGLLTAKPIIYATNVSEDDLA--GGNGFCEEIVALAAKEGAETVR 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQVEAEL EL EER +YL LGV+E GL +LIR+TY LLGLRTYFT+GEKET+AWT
Sbjct: 236 ISAQVEAELIELGDEERQDYLDGLGVNEGGLQSLIRATYQLLGLRTYFTTGEKETRAWTF 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYK 416
+AGMTAPQAAGVIH+DFE+GFIRA+T++ D + AGSL AR KG WL +
Sbjct: 296 KAGMTAPQAAGVIHTDFERGFIRAQTISTDKLLEAGSLVEARNKG---WLRSE----GKE 348
Query: 417 YFHWNSYMLRYFFSL 431
Y ++ + F++
Sbjct: 349 YVVEEGDVMEFLFNV 363
>gi|20808085|ref|NP_623256.1| GTP-dependent nucleic acid-binding protein EngD [Thermoanaerobacter
tengcongensis MB4]
gi|20516668|gb|AAM24860.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 254/347 (73%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVVPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++INLEL+ +DL+ +E+RM+K K D ++ E LEKI+ L +GKPA
Sbjct: 120 VRDVEIINLELILADLETVERRMQKTSKLARNDKKAAF----ELEVLEKIKNTLEEGKPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R+V ++ E+ + QL LLT KP++YVAN++E DL N HV ++ A S +
Sbjct: 176 RAVQFDEEEKAVVNQLMLLTSKPVMYVANISEEDLILREENLHVKKLREYALKEGSEVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL LP EER E L G+ E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELAALPDEERNELLKEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFE+GFIRAE ++++D V AGS AAARE GL+
Sbjct: 296 KRGTKAPQAAGKIHSDFERGFIRAEVISFEDLVKAGSQAAAREMGLL 342
>gi|334139365|ref|ZP_08512757.1| GTP-binding protein YchF [Paenibacillus sp. HGF7]
gi|333602178|gb|EGL13609.1| GTP-binding protein YchF [Paenibacillus sp. HGF7]
Length = 366
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/348 (56%), Positives = 263/348 (75%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLQKLADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCF D +I HV+GKV
Sbjct: 60 PNRIVPTAFEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFVDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DLD +EKR+++ +K K + Q AE EKI++AL +
Sbjct: 120 DPISDIETINLELILADLDSVEKRIDRSRKNMKGGNKQYA----AEVECFEKIKEALYND 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PARSV L D ER ++ L LLTMKP++Y ANV+E+++AD +NP+V +V A+ +
Sbjct: 176 QPARSVELTDEERVLVRDLHLLTMKPVLYAANVSEAEVADGDNNPYVQKVREFAAQEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE+E+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +A
Sbjct: 236 VVAISAKVESEIAELEGEDKEMFLEELGLQESGLDRLIKAAYKLLGLYTYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAA VIH+DFE+GFIRAE V+Y+D A GS+ AA+EKG
Sbjct: 296 WTIRKGTKAPQAAAVIHTDFERGFIRAEVVSYEDLTATGSMNAAKEKG 343
>gi|253574237|ref|ZP_04851579.1| GTP-binding protein YchF [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251846714|gb|EES74720.1| GTP-binding protein YchF [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 366
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 265/347 (76%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNRTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P SD+ INLEL+ +D++ +EKR+E+ KK K + ++ E LE+I++AL + +
Sbjct: 120 NPISDIQTINLELILADVESVEKRIERAKK-NMKGGNKQYAQEVE--VLERIKEALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L D E+ ++ L LLT+KP++Y ANV+E ++D +NP V +V A+ +
Sbjct: 177 PARSVELTDEEKLIVRDLHLLTLKPVLYAANVSEDGVSDADNNPFVQQVKEFAAAEGAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG++ SGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKKMFLEELGLNASGLDRLIQAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAGVIHSDFE+GFIRAE V+Y+D VAAGS++AARE+G
Sbjct: 297 TIRKGTKAPQAAGVIHSDFERGFIRAEVVSYEDLVAAGSMSAARERG 343
>gi|408357761|ref|YP_006846292.1| GTP-dependent nucleic acid-binding protein EngD [Amphibacillus
xylanus NBRC 15112]
gi|407728532|dbj|BAM48530.1| GTP-dependent nucleic acid-binding protein EngD [Amphibacillus
xylanus NBRC 15112]
Length = 366
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDHRLSKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+ +DL+ I KR+++++K + KD + E L K++ A
Sbjct: 120 DPIADIETINLELILADLETISKRIDRVEKLARQKDKDAIF----EFEILSKLRDAFEVE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PARS+ D + +K L LLT KP++YVANV+E + D NP+V +V A Q+
Sbjct: 176 RPARSIEFTDEQIKYVKGLHLLTQKPVLYVANVSEDGIQDADQNPYVQKVREYAEQEQAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE+E+ EL EE+ +L LG+ ESGL LIR+TY LLGL TYFT+GE+E +A
Sbjct: 236 VVVISAKVESEIAELDGEEKQMFLEELGIPESGLDQLIRATYHLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G APQAAG+IH+DFE+GFIRAETV+YDD + AGS+A ARE+G V
Sbjct: 296 WTFRKGTKAPQAAGIIHTDFERGFIRAETVSYDDLLDAGSMAVARERGKV 345
>gi|398814755|ref|ZP_10573433.1| GTP-binding protein YchF [Brevibacillus sp. BC25]
gi|398035843|gb|EJL29069.1| GTP-binding protein YchF [Brevibacillus sp. BC25]
Length = 366
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/348 (58%), Positives = 259/348 (74%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLEKLTKIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I VVRCFED +I HV G+V
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASRGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+F+DLD +++R++++ +K K+ D +SK + D LEK++ A +G
Sbjct: 120 DPLSDIETINLELIFADLDSVDRRIDRIARKVKSGDKESKQELDV----LEKLKAAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARSV L+D ER I+ L LLT+KP++YV NVAE + D SNPHV V A+ +
Sbjct: 176 QSARSVELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADSNPHVQTVREHAASEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VEAE+ EL E++ +L LG++ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VVVISAKVEAEIAELEGEDKEMFLEELGLTESGLDRLIRAAYKLLGLVTYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G AP AAGVIH+DFE+GFIRAE +AYD V AGS+A ARE+G
Sbjct: 296 WTIRQGTKAPGAAGVIHTDFERGFIRAEVIAYDHLVDAGSVAVARERG 343
>gi|421874903|ref|ZP_16306502.1| GTPase of unknown function family protein [Brevibacillus
laterosporus GI-9]
gi|372456100|emb|CCF16051.1| GTPase of unknown function family protein [Brevibacillus
laterosporus GI-9]
Length = 366
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/348 (58%), Positives = 260/348 (74%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL+ L+ +
Sbjct: 1 MGSSVGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLNKLTEIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL+HIREVD+I QVVRCFED +IVHV GKV
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASKGEGLGNQFLAHIREVDAIAQVVRCFEDQNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLELVF+DLD + +R++++ +K K+ D ++K+ E LEK++ A +G
Sbjct: 120 DPLSDIETINLELVFADLDSVTRRIDRMGRKAKSGDKEAKV----ELEVLEKLKAAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ AR V L + E I+ L LLT+KP++YV NVAE + + NPHV V A +
Sbjct: 176 QAARGVELTEDELKIIRDLHLLTIKPMLYVCNVAEDGIHNADENPHVQAVRKHAEAEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE+E+ EL E++ +L LG+ ESGL LIR+ YSLLGL TYFT+G +E +A
Sbjct: 236 VVIISAKVESEIAELEGEDKEMFLEELGLQESGLDRLIRAAYSLLGLITYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R APQAAGVIH+DFE+GFIRAE VAYDD VAAG++ AAREKG
Sbjct: 296 WTVRRETKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGNVNAAREKG 343
>gi|452992132|emb|CCQ96450.1| putative GTPase with RNA binding site [Clostridium ultunense Esp]
Length = 367
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 275/369 (74%), Gaps = 8/369 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
S GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL VL+ L
Sbjct: 3 SRSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLTVLTRLVTP 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
Q+ VP + EFVDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCFED +I HV GKVD
Sbjct: 62 QRTVPTTFEFVDIAGLVEGASKGEGLGNRFLSHIREVDAIVHVVRCFEDVNITHVAGKVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+ +INLEL+ +DL+ +EKR EK+KK K+ D + +L E A LE++++ G+
Sbjct: 122 PLRDIQIINLELILADLETVEKRFEKVKKMLKSGDKKVQL----EMALLERLKEHFDQGR 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
ARS+++++ ER +++L LLT+KP++YVANV E++ AD ++P+V +V++ A+ +
Sbjct: 178 SARSLSVDEEERKILRELHLLTLKPVLYVANVGENEAADATNHPYVKQVIDFAAGEGAEV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
++ISA+VE+E+ EL E++ +L LG+ ESGL LI++ Y LLGL T+FT+G +E +AW
Sbjct: 238 ISISAKVESEIAELEGEDKQLFLEELGLKESGLDRLIKAAYHLLGLITFFTAGPQEVRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSW--LHYHEHL 412
TI AG APQAAGVIHSDFE+GFIRAE V+Y+D + AGS+A ARE+GL+ Y
Sbjct: 298 TIPAGTKAPQAAGVIHSDFERGFIRAEVVSYEDLIHAGSMAKAREQGLLRLEGKDYEMKD 357
Query: 413 ASYKYFHWN 421
YF +N
Sbjct: 358 GDVVYFRFN 366
>gi|443662567|ref|ZP_21132965.1| GTPase of unknown function family protein [Microcystis aeruginosa
DIANCHI905]
gi|443332067|gb|ELS46695.1| GTPase of unknown function family protein [Microcystis aeruginosa
DIANCHI905]
Length = 357
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/343 (62%), Positives = 270/343 (78%), Gaps = 8/343 (2%)
Query: 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121
+GLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+K VP
Sbjct: 1 MGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSEKIVPT 60
Query: 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD 181
+EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP D++
Sbjct: 61 RIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDPARDIE 120
Query: 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK-AALEKIQQALMDGKPARSVT 240
VINLEL +DL Q+EKR+E+L+K +AK+S KE AE+ LEKI L DG AR V
Sbjct: 121 VINLELALADLGQVEKRVERLRK-QAKNS----KEAAEELVILEKILICLNDGISARKVD 175
Query: 241 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 300
L+ E + IK L LL+ KP+IY ANV+E DLA N V V +A + Q+ V +SAQ
Sbjct: 176 LSKEEEELIKNLGLLSRKPVIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVVIVSAQ 233
Query: 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 360
VE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI +GM
Sbjct: 234 VESELVELSEEERKDFLGSLGVEEGGLKSLIQATYELLGLRTYLTTGPQETRAWTIISGM 293
Query: 361 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGLV
Sbjct: 294 KAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLV 336
>gi|159903753|ref|YP_001551097.1| GTP-binding protein [Prochlorococcus marinus str. MIT 9211]
gi|159888929|gb|ABX09143.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9211]
Length = 393
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/363 (58%), Positives = 270/363 (74%), Gaps = 13/363 (3%)
Query: 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRL 106
F+ S+ + L+ GI+GLPNVGKSTLFNA+V N +AQAANFPFCTIEPN+G VAVPD RL
Sbjct: 22 FAYRSRAFLMLKVGIIGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNIGTVAVPDERL 81
Query: 107 HVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166
++L+ LS S++ + A +EFVDIAGLV+GASQGEGLGNKFL++IREVD+I+ VVRCFED +
Sbjct: 82 NLLAALSSSKEIISARIEFVDIAGLVEGASQGEGLGNKFLANIREVDAIVHVVRCFEDEN 141
Query: 167 IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA--EKAALE 224
++HV+G VDP D+++INLEL SDL QIEKR E+L+K Q ++ +DA E AALE
Sbjct: 142 VIHVSGSVDPIRDIEIINLELGLSDLAQIEKRKERLQK------QIRINKDAQLEYAALE 195
Query: 225 KIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVM 284
+I L G AR V L D ER +K L LLT KPIIY +N+ E D+A N + +V
Sbjct: 196 RINLTLQQGGAAREVDLQDEERILVKPLGLLTSKPIIYASNLTEDDIAI--GNAYSTKVN 253
Query: 285 NLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYF 344
+ A S V ISAQVE+EL +L +ER++YL LGV E GL +LIR++Y LLGL+TYF
Sbjct: 254 DFAVSQGSQNVKISAQVESELIDLGEQERLDYLNDLGVKEGGLQSLIRTSYDLLGLQTYF 313
Query: 345 TSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
T+GEKE++AWTI+ GMTAPQAAGVIH+DFE+GFIRA+T+ Y + AGS A+ KG
Sbjct: 314 TTGEKESRAWTIKQGMTAPQAAGVIHTDFERGFIRAQTIGYRKLLEAGSFVEAKSKG--- 370
Query: 405 WLH 407
WL
Sbjct: 371 WLR 373
>gi|167745325|ref|ZP_02417452.1| hypothetical protein ANACAC_00016 [Anaerostipes caccae DSM 14662]
gi|167655046|gb|EDR99175.1| GTP-binding protein YchF [Anaerostipes caccae DSM 14662]
Length = 376
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 259/350 (74%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIV VPD RL VLS + S
Sbjct: 11 TMKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVTVPDKRLDVLSEMYHS 69
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K +PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G V
Sbjct: 70 KKVIPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDENIVHVDGSVS 129
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
P D++ IN EL+FSD++ +++R+ K KKG D L + E LE+++ L DGK
Sbjct: 130 PLRDIETINFELIFSDIEVLDRRIAKSKKGSRNDKS--LAREVE--LLERVKAHLEDGKL 185
Query: 236 ARSVTLNDFERDSIKQLC-LLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASDLQSG 293
A++ +D E I C LLT+KP+I+ ANV E DL D SN VNEV A D+ +G
Sbjct: 186 AKTFVTDDEEEQEILDSCNLLTIKPVIFAANVCEDDLMDDAASNEFVNEVRTYAKDVDAG 245
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E E+ EL EER E+L LG+SESGL LI ++YSLLGL +Y TSGE ET+A
Sbjct: 246 VFVICAQIEQEIAELDDEERKEFLEDLGLSESGLDKLISASYSLLGLISYLTSGEDETRA 305
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G APQAAG IH+DFE+GFIRAE V+YDD V GS+AAAREKGLV
Sbjct: 306 WTITEGTKAPQAAGKIHTDFERGFIRAEVVSYDDLVENGSIAAAREKGLV 355
>gi|334128576|ref|ZP_08502460.1| GTP-dependent nucleic acid-binding protein EngD [Centipeda
periodontii DSM 2778]
gi|333386771|gb|EGK57979.1| GTP-dependent nucleic acid-binding protein EngD [Centipeda
periodontii DSM 2778]
Length = 368
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/350 (58%), Positives = 259/350 (74%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D+I EL +DL+ +EKRM K+ K K+ ++K AE AALE+++ AL +GK
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRMAKVTKLLKSGSKEAK----AEHAALERLKSALDEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
PAR V L+D E+ ++ L LLT KPI+Y+ANV E + A + NPHV V A+ +
Sbjct: 178 PAREVELSDEEQAMLRDLNLLTRKPILYIANVGEDEAATADAENPHVQTVKEYAARTGAE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VT+SA++E E+ EL +EE +L LG+SESGL LI +SLLGL+T+ T+GE E +A
Sbjct: 238 VVTVSARLEEEIAELDAEEAAIFLEDLGLSESGLDRLIHGAFSLLGLQTFLTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGLV
Sbjct: 298 WTITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLV 347
>gi|373855212|ref|ZP_09597958.1| GTP-binding protein YchF [Bacillus sp. 1NLA3E]
gi|372454281|gb|EHP27746.1| GTP-binding protein YchF [Bacillus sp. 1NLA3E]
Length = 366
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/352 (56%), Positives = 258/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLTKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++ INLEL+ +D++ +EKR+ EKL K K KD+ + + L K++ A
Sbjct: 120 DPIDDIETINLELILADMETVEKRISRVEKLSKQKDKDAVVEFE------VLTKLRDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR+V + + K L LLT+KP++YVANVAE D++DP N +V V + A+
Sbjct: 174 AEKPARTVEFTEEQMKVAKGLHLLTIKPVLYVANVAEEDVSDPSGNEYVQLVKDFAAKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E
Sbjct: 234 AEVIVICAKIESEIAELEGEEKAMFLQELGIGESGLDQLIRAAYHLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R GM APQ AGVIHSDFE+GFIRAETV+YDD +A G++AAARE G V
Sbjct: 294 RAWTFRKGMKAPQCAGVIHSDFERGFIRAETVSYDDLLAGGNMAAAREAGRV 345
>gi|429735969|ref|ZP_19269889.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156527|gb|EKX99156.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 374
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/350 (58%), Positives = 258/350 (73%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 9 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTDLYHS 67
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 68 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 127
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D+I EL +DL+ +EKRM K+ K K+ ++K AE AALE+++ AL +GK
Sbjct: 128 PLHDIDIIETELCLADLEAVEKRMAKVTKLLKSGSKEAK----AEHAALERLKTALDEGK 183
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG 293
PAR V L+D E+ ++ L LLT KPI+Y+ANV E + A NPHV V A+ +
Sbjct: 184 PAREVELSDEEQAILRDLNLLTRKPILYIANVGEDEAATADAENPHVQTVKGYAARTGAE 243
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VT+SA++E E+ EL +EE +L LG+SESGL LI +SLLGL+T+ T+GE E +A
Sbjct: 244 VVTVSARLEEEIAELDAEEAAVFLEDLGLSESGLDRLIHGAFSLLGLQTFLTAGEDECRA 303
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD V GS+AAAR+KGLV
Sbjct: 304 WTITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVTLGSVAAARDKGLV 353
>gi|304407783|ref|ZP_07389434.1| GTP-binding protein YchF [Paenibacillus curdlanolyticus YK9]
gi|304343266|gb|EFM09109.1| GTP-binding protein YchF [Paenibacillus curdlanolyticus YK9]
Length = 366
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/347 (57%), Positives = 261/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLIKLTELVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV GAS+GEGLGNKFL+HIREVD+I+ VVRCF D +I HV GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ INLEL+ SD+D +++R+++ +K K K ++ E LE++++AL + +
Sbjct: 120 DPLGDIQTINLELILSDIDSVDRRIDRSRK-NMKGGDKKYAQEIE--VLERLKEALYNDQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D ER I+ L LLT+KP++Y ANV+E+++A+ NP+VN V A+ +
Sbjct: 177 PARSVELSDDERQLIRDLHLLTIKPVLYAANVSEAEVANADENPYVNIVREFAAAEGAAV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E++ +L LG+ ESGL LI + Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDKAMFLEELGLQESGLNRLINAAYKLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR GM APQAAGVIH+DFE+GFIRAE V+Y+D VAAGS+ AA+EKG
Sbjct: 297 TIRKGMKAPQAAGVIHTDFERGFIRAEVVSYNDLVAAGSMNAAKEKG 343
>gi|160946373|ref|ZP_02093582.1| hypothetical protein PEPMIC_00333 [Parvimonas micra ATCC 33270]
gi|158447489|gb|EDP24484.1| GTP-binding protein YchF [Parvimonas micra ATCC 33270]
Length = 364
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 274/369 (74%), Gaps = 10/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RLH L+ L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGLVNVPDERLHKLTELYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA +EF DIAGLVKGAS+GEGLGNKFLSHIREVD+I++V+RCFED +IVHV+G+V+P
Sbjct: 60 KTIPAVIEFYDIAGLVKGASKGEGLGNKFLSHIREVDAIVEVIRCFEDENIVHVDGEVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV+ INLEL+ SDL+ +EKR+EK +K K ++S KE+ + LEKI L +GK
Sbjct: 120 LRDVETINLELILSDLELVEKRLEKARKS-LKGNKS-FKEEVD--LLEKILPVLEEGKSI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
RS++ ND E+ +K LL++KPIIYVANV E D+ D G SN +V + + A SG V
Sbjct: 176 RSLSFNDNEKAILKNFSLLSVKPIIYVANVNEDDMLDEGKSNEYVKVLNDFAKQENSGIV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQ+E E++EL +E++E+L LG+SESG+ LI+ +Y+LLGL ++ T+G +ET+AWT
Sbjct: 236 VISAQIEKEISELEDDEQIEFLNDLGISESGVSKLIKESYNLLGLMSFLTAGPEETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL--- 412
I+ G A AAG IHSD ++GFIRAE V YDD ++ GS+ AAREKGLV L E++
Sbjct: 296 IKIGTNAVNAAGKIHSDIQRGFIRAEIVNYDDLISLGSMVAAREKGLVR-LEGKEYIMQD 354
Query: 413 ASYKYFHWN 421
YF +N
Sbjct: 355 GDVVYFRFN 363
>gi|407979899|ref|ZP_11160703.1| GTP-binding protein YchF [Bacillus sp. HYC-10]
gi|407413392|gb|EKF35102.1| GTP-binding protein YchF [Bacillus sp. HYC-10]
Length = 366
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE L K++ A G
Sbjct: 120 DPVSDIETINLELILADLETVEKRLTRVSKLAKQKDKEAV----AEFEILTKLKDAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARSV D ++ +KQL LLT KPI+YVANV+E ++AD N +V ++ AS +
Sbjct: 176 KSARSVEFTDEQQKLVKQLHLLTSKPILYVANVSEDEVADQDGNEYVQQIREFASGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKV 345
>gi|223940694|ref|ZP_03632533.1| GTP-binding protein YchF [bacterium Ellin514]
gi|223890621|gb|EEF57143.1| GTP-binding protein YchF [bacterium Ellin514]
Length = 367
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/347 (59%), Positives = 251/347 (72%), Gaps = 4/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAV KAQAAN+PFCTI+PNVGIV VPD RL VL ++K+
Sbjct: 2 LKAGIVGLPNVGKSTLFNAVTRTRKAQAANYPFCTIDPNVGIVTVPDSRLEVLKNIAKTT 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA+VEFVDIAGLVKGAS GEGLGNKFL+HIREVD+I+QVVRCF+D DI HV G VDP
Sbjct: 62 VIIPAAVEFVDIAGLVKGASAGEGLGNKFLTHIREVDAIVQVVRCFDDPDIHHVTGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ IN ELV +DL+ ++K+ + K + + + +DA A E I A GKP
Sbjct: 122 VRDIETINTELVLADLEAVKKKRASIGKDVKRGDKEAVAQDAVLAKFEPILDA---GKPG 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQSGRV 295
+V L ++ K LLT KP I+ NV ESDLA NP+V +V + + L V
Sbjct: 179 LTVELTPEDKVISKSFYLLTDKPTIFACNVKESDLATADQNPYVLKVREYVKTHLACEAV 238
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQ+E++L +L EE +L LGV ESG+G LIR+TY LLGLRTYFT+GEKE +AWT
Sbjct: 239 VISAQIESDLIDLSDEEAKAFLKELGVEESGVGALIRATYHLLGLRTYFTAGEKEVRAWT 298
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
I G TAPQAAGVIHSDFE+GFI+AETVAY+D V GS+A AREKGL
Sbjct: 299 IHVGNTAPQAAGVIHSDFERGFIKAETVAYEDLVKCGSVAVAREKGL 345
>gi|121535350|ref|ZP_01667162.1| GTP-binding protein YchF [Thermosinus carboxydivorans Nor1]
gi|121306042|gb|EAX46972.1| GTP-binding protein YchF [Thermosinus carboxydivorans Nor1]
Length = 368
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 269/372 (72%), Gaps = 8/372 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDERLWTLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K +K P ++ FVDIAGLVKGASQGEGLGNKFLSHIR+VD++ QVVRCF D +I HV G
Sbjct: 60 YKPRKTTPTAMRFVDIAGLVKGASQGEGLGNKFLSHIRQVDAVAQVVRCFADANITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ + KR E+ +K KA D +++ +E A LE+++ L
Sbjct: 120 ALDPLRDIEIINTELCLADLETVAKRFERTQKMAKAGDKKAQ----SEFAVLERLRTGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+PAR + L++ E+ ++ L LLT+KP+++VANV+E D+A P +NP+V V A+
Sbjct: 176 EGQPARRLGLSEEEQALVRDLNLLTLKPVLFVANVSEDDVAAPDANPYVQAVKQYAAGEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + +SA++EAE+ ELP EE ++L LG++ESGL LI++ Y LLGL T+FT+GE+E
Sbjct: 236 AEVIAVSAKLEAEIAELPDEEAKQFLVELGLAESGLDKLIKAGYKLLGLITFFTAGEQEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYH 409
+AWTIR G APQAAG IHSD E+GFIRAE V+Y D +AAGS AAREKGL+ Y
Sbjct: 296 RAWTIRQGTKAPQAAGKIHSDIERGFIRAEVVSYTDLMAAGSYGAAREKGLIRLEGKDYV 355
Query: 410 EHLASYKYFHWN 421
YF +N
Sbjct: 356 MQDGDVVYFRFN 367
>gi|299541780|ref|ZP_07052103.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZC1]
gi|424740061|ref|ZP_18168471.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZB2]
gi|298725518|gb|EFI66159.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZC1]
gi|422946284|gb|EKU40697.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZB2]
Length = 366
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL+HIREVD+I QVVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLAHIREVDAICQVVRCFVDENITHVSGAV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL +DL+ ++KR++++ K K KD ++ ++E L KI++ L +G
Sbjct: 120 DPIDDIEVINLELALADLESVDKRLQRVSKMAKQKDKEAMIEE----PVLLKIKEQLENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D E IK L LLT+KP++YVANV+E ++AD +N +V +V AS +
Sbjct: 176 KPARAAELSDDELKVIKGLHLLTIKPMLYVANVSEDEVADADNNEYVKKVREYASAESAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+TI A++E E++EL EE+ +L LG+ ESGL LIR++Y LLGL TYFT+G +E +A
Sbjct: 236 VITICAKIEEEISELDDEEKAMFLEELGIKESGLDQLIRTSYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS AAA+E G V
Sbjct: 296 WTFRKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSQAAAKEAGKV 345
>gi|317473243|ref|ZP_07932540.1| GTP-binding protein YchF [Anaerostipes sp. 3_2_56FAA]
gi|316899338|gb|EFV21355.1| GTP-binding protein YchF [Anaerostipes sp. 3_2_56FAA]
Length = 365
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/349 (58%), Positives = 258/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIV VPD RL VLS + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVTVPDKRLDVLSEMYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G V P
Sbjct: 60 KVIPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDENIVHVDGSVSP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ IN EL+FSD++ +++R+ K KKG D L + E LE+++ L DGK A
Sbjct: 120 LRDIETINFELIFSDIEVLDRRIAKSKKGSRNDKS--LAREVE--LLERVKAHLEDGKLA 175
Query: 237 RSVTLNDFERDSIKQLC-LLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASDLQSGR 294
++ +D E I C LLT+KP+I+ ANV E DL D SN VNEV A D+ +G
Sbjct: 176 KTFVTDDEEEQEILDSCNLLTIKPVIFAANVCEDDLMDDAASNEFVNEVRTYAKDVDAGV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+E E+ EL EER E+L LG+SESGL LI ++YSLLGL +Y TSGE ET+AW
Sbjct: 236 FVICAQIEQEIAELDDEERKEFLEDLGLSESGLDKLISASYSLLGLISYLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAG IH+DFE+GFIRAE V+YDD V GS+AAAREKGLV
Sbjct: 296 TITEGTKAPQAAGKIHTDFERGFIRAEVVSYDDLVENGSIAAAREKGLV 344
>gi|226315510|ref|YP_002775406.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
brevis NBRC 100599]
gi|226098460|dbj|BAH46902.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
brevis NBRC 100599]
Length = 366
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/348 (57%), Positives = 259/348 (74%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLEKLTQIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I VVRCFED +I HV G+V
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASRGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+F+DLD +++R++++ +K K+ D +SK + D LEK++ A +G
Sbjct: 120 DPLSDIETINLELIFADLDSVDRRIDRIARKVKSGDKESKQELDV----LEKLKAAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARSV L+D ER I+ L LLT+KP++YV NVAE + D +NPHV V A+ +
Sbjct: 176 QSARSVELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADNNPHVQTVRQHAASEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VEAE+ EL E++ +L LG++ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VVVISAKVEAEIAELEGEDKEMFLEELGLTESGLDRLIRAAYKLLGLVTYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G AP AAGVIH+DFE+GFIRAE +AYD V AGS+A ARE+G
Sbjct: 296 WTIRQGTKAPGAAGVIHTDFERGFIRAEVIAYDHLVDAGSVAVARERG 343
>gi|410458100|ref|ZP_11311863.1| GTP-binding protein YchF [Bacillus azotoformans LMG 9581]
gi|409931728|gb|EKN68704.1| GTP-binding protein YchF [Bacillus azotoformans LMG 9581]
Length = 366
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/352 (55%), Positives = 260/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTQLVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADDEITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ INLEL+ +DL+ ++KR++ KL K K KD+ AE L +++A
Sbjct: 120 DPISDIETINLELILADLETVDKRIDRVGKLAKQKDKDAA------AEHEILVILKEAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK ARS+ + + +K L LLT+KP++YVANV E ++ADP N +V +V A
Sbjct: 174 EGKMARSIEFTEEQLKLVKNLHLLTIKPMLYVANVGEDEVADPSGNEYVQKVHEFAKSDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E+E+ EL EE+ +L LG+ ESGL LI++ YSLLGL TYFT+GE+E
Sbjct: 234 AEVIVICAKIESEIAELDGEEKQMFLEELGIKESGLDQLIKAAYSLLGLATYFTAGEQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT + GM APQ AG+IH+DFE+GFIRAETV+Y+D +A GS+ AARE G V
Sbjct: 294 RAWTFKKGMKAPQCAGIIHTDFERGFIRAETVSYEDLLAGGSMTAAREAGKV 345
>gi|401564312|ref|ZP_10805215.1| GTP-binding protein YchF [Selenomonas sp. FOBRC6]
gi|400188967|gb|EJO23093.1| GTP-binding protein YchF [Selenomonas sp. FOBRC6]
Length = 368
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/350 (58%), Positives = 260/350 (74%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL+VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDTRLNVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D+I EL +DL+ +EKRM K +K K+ ++K AE AALE+++ AL +GK
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRMVKVMKLLKSGSKEAK----AEHAALERLKTALDEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
PAR V L+D E+ ++ L LLT KPI+Y+ANV E + A + NPHV V A+ +
Sbjct: 178 PAREVELSDEEQAMLRDLNLLTRKPILYIANVGEDEAATADAKNPHVQTVKGYAARTGAE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VT+SA++E E+ EL +EE +L LG+SESGL LI ++LLGL+T+ T+GE E +A
Sbjct: 238 VVTVSARLEEEIAELDAEEAAVFLEDLGLSESGLDRLIHGAFALLGLQTFLTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD V GS+AAAR+KGLV
Sbjct: 298 WTITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVTLGSVAAARDKGLV 347
>gi|169830188|ref|YP_001700346.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
sphaericus C3-41]
gi|168994676|gb|ACA42216.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
sphaericus C3-41]
Length = 366
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL+HIREVD+I QVVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLAHIREVDAICQVVRCFVDENITHVSGAV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL +DL+ ++KR++++ K K KD ++ ++E L KI++ L +G
Sbjct: 120 DPIDDIEVINLELALADLESVDKRIQRVSKMAKQKDKEAMIEE----PVLLKIKEQLENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D E IK L LLT+KP++YVANV+E ++AD +N +V +V AS +
Sbjct: 176 KPARAAELSDDELKVIKGLHLLTIKPMLYVANVSEDEVADADNNEYVQKVREYASAEGAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+TI A++E E++EL EE+ +L LG+ ESGL LIR++Y LLGL TYFT+G +E +A
Sbjct: 236 VITICAKIEEEISELDDEEKAMFLEELGIKESGLDQLIRTSYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS AAA+E G V
Sbjct: 296 WTFRKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSQAAAKEAGKV 345
>gi|89100935|ref|ZP_01173782.1| YyaF [Bacillus sp. NRRL B-14911]
gi|89084344|gb|EAR63498.1| YyaF [Bacillus sp. NRRL B-14911]
Length = 366
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLNKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE LE ++ A
Sbjct: 120 DPISDIETINLELILADLESVEKRIARVGKMAKQKDKEAV----AELEVLELLKDAFESD 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + K L LLT+KP++YVANV E D+ADP SN +V V + A +
Sbjct: 176 KPARTVEFTEEQHKIAKNLHLLTIKPVLYVANVGEDDVADPSSNEYVQSVRDFAEKDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIRS Y LL L TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIRSAYHLLDLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAETV YDD + A ++AAA+E G V
Sbjct: 296 WTFRKGMKAPQCAGIIHTDFERGFIRAETVHYDDLLEAKTMAAAKEAGKV 345
>gi|126651980|ref|ZP_01724172.1| translation-associated GTPase [Bacillus sp. B14905]
gi|126591249|gb|EAZ85358.1| translation-associated GTPase [Bacillus sp. B14905]
Length = 366
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL+HIREVD+I QVVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLAHIREVDAICQVVRCFVDENITHVSGAV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL +DL+ ++KR++++ K K KD ++ ++E L KI++ L +G
Sbjct: 120 DPIDDIEVINLELALADLESVDKRIQRVSKMAKQKDKEAMIEE----PVLLKIKEQLENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D E IK L LLT+KP++YVANV+E ++AD +N +V +V AS +
Sbjct: 176 KPARAAELSDDELKVIKGLHLLTIKPMLYVANVSEDEVADADNNEYVKKVREYASAEGAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+TI A++E E++EL EE+ +L LG+ ESGL LIR++Y LLGL TYFT+G +E +A
Sbjct: 236 VITICAKIEEEISELDDEEKAMFLEELGIKESGLDQLIRTSYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS AAA+E G V
Sbjct: 296 WTFRKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSQAAAKEAGKV 345
>gi|373849825|ref|ZP_09592626.1| GTP-binding protein YchF [Opitutaceae bacterium TAV5]
gi|391227918|ref|ZP_10264125.1| GTP-binding protein YchF [Opitutaceae bacterium TAV1]
gi|372475990|gb|EHP35999.1| GTP-binding protein YchF [Opitutaceae bacterium TAV5]
gi|391223411|gb|EIQ01831.1| GTP-binding protein YchF [Opitutaceae bacterium TAV1]
Length = 367
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/347 (57%), Positives = 258/347 (74%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPD R +VL ++K+Q
Sbjct: 2 LKAGIVGLPNVGKSTLFNALTRSRKAEAANYPFCTIDPNVGVVTVPDDRAYVLQKIAKTQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA++E VDIAGLVKGAS+GEGLGN+FL++IREVD+I+QVVRCFED+DI+H G +DP
Sbjct: 62 VVIPAAIEMVDIAGLVKGASKGEGLGNQFLANIREVDAIVQVVRCFEDSDIIHTMGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++VI ELV +DLD ++KR+EK KK K+ D +++ AE A E++ L KP
Sbjct: 122 VRDIEVITTELVLADLDSVQKRLEKTQKKAKSGDKEAQ----AEAALCERLIPHLDQNKP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ-SGR 294
A + N+ E +K LL+ KP++Y NVAE DLA NP V +V + +
Sbjct: 178 ANILETNEEEAKLLKLFQLLSAKPVLYACNVAEGDLATAEQNPFVQKVAAFVKEHHDAAY 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA++EAEL EL EE ++L LGV +SG+ +LIR+TY+LLGL+TYFT+GEKE +AW
Sbjct: 238 VPISARIEAELIELSPEEAKDFLKDLGVDDSGVSSLIRATYALLGLQTYFTAGEKEVRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAGVIHSDFEKGFI+AE V+YDD V GS AAARE G
Sbjct: 298 TIRKGWKAPQAAGVIHSDFEKGFIKAEVVSYDDLVRLGSTAAAREAG 344
>gi|384044191|ref|YP_005492208.1| GTPase [Bacillus megaterium WSH-002]
gi|345441882|gb|AEN86899.1| GTPase probable translation factor-like protein [Bacillus
megaterium WSH-002]
Length = 366
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ +++K K KD ++ E LEK++ A
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVQKMAKQKDKEAMY----EYEVLEKLKNAFESD 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V+ + + +KQ LLT+KPI+YVANV+E ++AD +N +V +V A+ +
Sbjct: 176 QPARAVSFTEEQMKLVKQFHLLTIKPILYVANVSEDEVADASANEYVAKVREYAASEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ +SGL L+R+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVCARIESEIAELEGEEKAMFLEELGIEQSGLDQLVRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT GM AP+ AG+IH+DFE+GFIRAETV+Y+D +AA ++ AARE G V
Sbjct: 296 WTFTQGMKAPECAGIIHTDFERGFIRAETVSYEDLLAAKTMGAAREAGKV 345
>gi|317130992|ref|YP_004097274.1| GTP-binding protein YchF [Bacillus cellulosilyticus DSM 2522]
gi|315475940|gb|ADU32543.1| GTP-binding protein YchF [Bacillus cellulosilyticus DSM 2522]
Length = 366
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDYRLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIR+VD+I VVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIRQVDAISHVVRCFNDENITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ VINLEL+ +DL+ +EKR+ K+ K+ K KD QS AE L+K++ A +
Sbjct: 120 DPIRDIQVINLELILADLETVEKRIGKVEKQAKQKDKQSM----AEFEVLDKLRNAFEEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV LN + K L LLTMKP++YVANV+E ++ D NP+V +V A++ S
Sbjct: 176 KPARSVELNTEQEKIAKGLHLLTMKPVLYVANVSEEEILDVSDNPYVQKVKAFAAEEGSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ E+L LG++ESGL LI++ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVCAKIESEIAELDGEEKEEFLNELGIAESGLDQLIKAAYQLLGLETYFTAGKQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI+ G APQAAGVIH+DFE+GFIRAE V++DD + AGS+ A+E G V
Sbjct: 296 WTIKKGTKAPQAAGVIHTDFERGFIRAEIVSFDDLIEAGSMTVAKENGKV 345
>gi|194016267|ref|ZP_03054881.1| GTP-binding protein YchF [Bacillus pumilus ATCC 7061]
gi|194011740|gb|EDW21308.1| GTP-binding protein YchF [Bacillus pumilus ATCC 7061]
Length = 366
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE L K+ A G
Sbjct: 120 DPVSDIETINLELILADLETVEKRLARVSKLAKQKDKEAV----AEFDILSKLMNAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARSV D ++ +KQL LLT KP++YVANV+E ++AD N +V ++ AS +
Sbjct: 176 KSARSVEFTDEQQKLVKQLHLLTSKPVLYVANVSEDEVADHDGNEYVQQIREFASSENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIQASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKV 345
>gi|402574963|ref|YP_006624306.1| GTP-binding protein YchF [Desulfosporosinus meridiei DSM 13257]
gi|402256160|gb|AFQ46435.1| GTP-binding protein YchF [Desulfosporosinus meridiei DSM 13257]
Length = 366
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/352 (57%), Positives = 260/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVEVPDSRLQKLAEMVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G V
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
+PK D++ I+LEL+ SD++ IEKR + KL K K +QS++ A LE++++
Sbjct: 120 NPKRDIETIDLELILSDMESIEKRSDRTSKLLKTGDKKAQSEI------ALLERLKEVFN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
GK ARS+T D ER+ +K LLT+KP++YVANV+ES LA NP+V +V +A++
Sbjct: 174 QGKGARSLTFTDDEREILKGFPLLTLKPVLYVANVSESGLATADDNPYVQQVREIAAEEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + AQ+EAE+ EL ++E+ +L LG+ ESGL LIR + LLGL T+FT+G E
Sbjct: 234 AEVVVVCAQIEAEIAELEADEKAAFLEDLGLEESGLDRLIRVAFHLLGLMTFFTAGPIEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
KAWTI G AP+AAGVIH+DFE GFIRAE V+Y DFV L AR+KGLV
Sbjct: 294 KAWTIYQGTKAPKAAGVIHTDFEHGFIRAEVVSYKDFVEFNGLNGARDKGLV 345
>gi|295707328|ref|YP_003600403.1| GTP-binding protein EngD [Bacillus megaterium DSM 319]
gi|294804987|gb|ADF42053.1| GTP-binding protein EngD [Bacillus megaterium DSM 319]
Length = 366
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ +++K K KD ++ E LEK++ A
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVQKMAKQKDKEAMY----EYEILEKLKNAFESD 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V+ + + +KQ LLT+KPI+YVANV+E ++AD +N +V +V A+ +
Sbjct: 176 QPARAVSFTEEQMKLVKQFHLLTIKPILYVANVSEDEVADASANEYVAKVRQYAASEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ +SGL L+R+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVCARIESEIAELEGEEKAMFLEELGIEQSGLDQLVRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT GM AP+ AG+IH+DFE+GFIRAETV+Y+D +AA ++ AARE G V
Sbjct: 296 WTFTQGMKAPECAGIIHTDFERGFIRAETVSYEDLLAAKTMGAAREAGKV 345
>gi|357058034|ref|ZP_09118891.1| GTP-binding protein YchF [Selenomonas infelix ATCC 43532]
gi|355374611|gb|EHG21905.1| GTP-binding protein YchF [Selenomonas infelix ATCC 43532]
Length = 368
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/352 (58%), Positives = 256/352 (72%), Gaps = 11/352 (3%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTELYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232
P D+D+I EL +DL+ +EKRM KL K +KD++ AE ALE ++ AL +
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRMAKVTKLLKSGSKDAK------AEHTALECLKSALDE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQ 291
GKPAR V L D E+ ++ L LLT KPI+Y+ANV E + A NPHV V A+
Sbjct: 176 GKPAREVELTDEEQAMLRDLNLLTRKPILYIANVGEDEAATADAENPHVQTVKEYAARTG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ VT+SA++E E+ EL +EE +L LG+SESGL LI ++LLGL+T+ T+GE E
Sbjct: 236 AQVVTVSARLEEEIAELDAEEAAVFLEDLGLSESGLDRLIHGAFALLGLQTFLTAGEDEC 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGLV
Sbjct: 296 RAWTITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLV 347
>gi|374997995|ref|YP_004973494.1| GTP-binding protein YchF [Desulfosporosinus orientis DSM 765]
gi|357216361|gb|AET70979.1| GTP-binding protein YchF [Desulfosporosinus orientis DSM 765]
Length = 366
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL VL+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDSRLQVLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGASQGEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G V
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASQGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+PK D++ I+LEL+ +D++ IEKR ++ K KA D +++ E LE++++A G
Sbjct: 120 NPKRDIETIDLELILADMESIEKRSDRTSKLLKAGDKKAQ----TEITLLERLKEAFNQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++T +D ERD +K LLT+KP++YVANV+ES L N +V +V +A +
Sbjct: 176 KRARTLTFSDEERDILKGFPLLTLKPVLYVANVSESGLESVADNSYVQQVKEIADAEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + AQ+EAE+ EL +EE+ +L LG+ ESGL LI+ + LLGL T+FT+G E KA
Sbjct: 236 VVVVCAQIEAEIAELDAEEKNAFLEDLGLEESGLDRLIKVAFHLLGLMTFFTAGPMEVKA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G AP+AAGVIH+DFE GFIRAE VAY DFV L A+EKGLV
Sbjct: 296 WTIYQGTKAPKAAGVIHTDFEHGFIRAEVVAYKDFVEHQGLNGAKEKGLV 345
>gi|310644401|ref|YP_003949160.1| GTPase translation factor [Paenibacillus polymyxa SC2]
gi|309249352|gb|ADO58919.1| GTPase probable translation factor-like protein [Paenibacillus
polymyxa SC2]
gi|392305083|emb|CCI71446.1| GTP-dependent nucleic acid-binding protein engD [Paenibacillus
polymyxa M1]
Length = 366
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/347 (56%), Positives = 261/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ INLEL+ +D++ ++KR+E+ +K K + ++ E LE+I+++L K
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRK-NMKGGNKQYAQEVE--VLERIKESLYADK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L++ E+ I+ L LLTMKP++Y ANV+E + + SNP+V +V A +
Sbjct: 177 PARSVELSEDEKLIIRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVREFAVAENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VEAE+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVEAEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G AP AAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G
Sbjct: 297 TIHKGTKAPGAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERG 343
>gi|326390533|ref|ZP_08212089.1| GTP-binding protein YchF [Thermoanaerobacter ethanolicus JW 200]
gi|325993358|gb|EGD51794.1| GTP-binding protein YchF [Thermoanaerobacter ethanolicus JW 200]
Length = 364
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 253/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++I LEL+ +D++ IE+R++K K D ++ E LEKI++ L +GKP
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF----EVEVLEKIKKGLDEGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A + S +
Sbjct: 176 RALQFTEEEKSFVSQLMLLTYKPVMYVANISEEDLISGEENQYVKQLKEYAENENSQVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+
Sbjct: 296 KKGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLM 342
>gi|294501977|ref|YP_003565677.1| GTP-binding protein EngD [Bacillus megaterium QM B1551]
gi|294351914|gb|ADE72243.1| GTP-binding protein EngD [Bacillus megaterium QM B1551]
Length = 366
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ +++K K KD ++ E LEK++ A
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVQKMAKQKDKEAMY----EYEILEKLKNAFESD 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V+ + + +KQ LLT+KPI+YVANV+E ++AD +N +V +V A+ +
Sbjct: 176 QPARAVSFTEEQMKLVKQFHLLTIKPILYVANVSEDEVADASANEYVAKVREYAASEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ +SGL L+R+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVCARIESEIAELEGEEKAMFLEELGIEQSGLDQLVRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT GM AP+ AG+IH+DFE+GFIRAETV+Y+D +AA ++ AARE G V
Sbjct: 296 WTFTQGMKAPECAGIIHTDFERGFIRAETVSYEDLLAAKTMGAAREAGKV 345
>gi|390457272|ref|ZP_10242800.1| GTP-binding protein YchF [Paenibacillus peoriae KCTC 3763]
Length = 366
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 261/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ INLEL+ +D++ ++KR+E+ +K K + ++ E LE+I+++L K
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRK-NMKGGNKQYAQEVE--VLERIKESLYADK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D +R ++ L LLTMKP++Y ANV+E + + SNP+V +V A +
Sbjct: 177 PARSVELSDEDRVIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVREFAVAENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G AP AAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G
Sbjct: 297 TIHKGTKAPGAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERG 343
>gi|297544906|ref|YP_003677208.1| GTP-binding protein YchF [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842681|gb|ADH61197.1| GTP-binding protein YchF [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 363
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 252/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + K Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIEKPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGL KGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLTKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++I LEL+ +D++ IE+R++K K D ++ E LEKI++ L +GKP
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF----EVEVLEKIKKGLDEGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S +
Sbjct: 176 RALQFTEEEKSFVSQLMLLTSKPVMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+
Sbjct: 296 KKGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLM 342
>gi|427724969|ref|YP_007072246.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7376]
gi|427356689|gb|AFY39412.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7376]
Length = 364
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/347 (61%), Positives = 267/347 (76%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA AANFPFCTIEPNVG+VAVPDPRL VL+ LSKS
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDPRLGVLAELSKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G +DP
Sbjct: 62 KIVPTRMEFVDIAGLVEGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL+ +D+ Q+EKR+E+ KK ++ + E A LEKI L DGKPA
Sbjct: 122 VRDIEIINLELILADMSQVEKRLERAKKQAKGKAKEAM---LEVAVLEKILPILEDGKPA 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R V L+ E ++IK L LLT KP+IY NV+E DLA+ N V +V +A+ + V
Sbjct: 179 RQVELDADEENAIKALGLLTRKPVIYATNVSEDDLAE--GNEWVEQVRGVAATENAQVVV 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SAQVEAEL EL ++ ++L +LGVSE GL +LI +TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 VSAQVEAELVELEEADKADFLEALGVSEGGLQSLISATYELLGLRTYLTTGPEETRAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
GM APQAAGVIH+DFE+GFIRAET+ Y + V GS AA+EKGL+
Sbjct: 297 LVGMKAPQAAGVIHTDFERGFIRAETIGYQELVDCGSTNAAKEKGLL 343
>gi|375310997|ref|ZP_09776258.1| gtpase translation factor [Paenibacillus sp. Aloe-11]
gi|375076975|gb|EHS55222.1| gtpase translation factor [Paenibacillus sp. Aloe-11]
Length = 366
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 261/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ INLEL+ +D++ ++KR+E+ +K K + ++ E LE+I+++L K
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRK-NMKGGNKQYAQEVE--VLERIKESLYADK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D +R ++ L LLTMKP++Y ANV+E + + SNP+V +V A +
Sbjct: 177 PARSVELSDEDRLIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVREFAVAENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G AP AAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G
Sbjct: 297 TIHKGTKAPGAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERG 343
>gi|412990481|emb|CCO19799.1| GTP-dependent nucleic acid-binding protein EngD [Bathycoccus
prasinos]
Length = 371
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/349 (58%), Positives = 258/349 (73%), Gaps = 1/349 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ EN AQ ANFPFCTIEPNVGIVAVPD RL VLS +S
Sbjct: 1 MSLKTGIVGLPNVGKSTLFNALTENAAAQTANFPFCTIEPNVGIVAVPDERLKVLSQISS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +PA VE VDIAGLVKGAS+G+GLGNKFLS+IRE D+I+ VRCF+D++++HV+G+V
Sbjct: 61 SENIIPAFVEIVDIAGLVKGASEGQGLGNKFLSNIRECDAIIHTVRCFDDDEVIHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P DV IN EL SDL Q+E+R+++LKKGKAK K +E AE LE++ +L G
Sbjct: 121 NPVEDVATINFELALSDLLQVERRIDRLKKGKAKSPTEKAQEAAELEVLERVSLSLESGI 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
P R + L + E + L LLT KP IY ANV ESDL GS N +V +++LA+ S
Sbjct: 181 PVRVLKLCEDESVLLSTLNLLTQKPCIYAANVCESDLRTKGSGNIYVENLLDLANSEGSA 240
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+SA++E+EL ++ EER +L LGV E GL L+R+ Y L L+TYFT+GEKET+A
Sbjct: 241 VCIVSAKIESELVQMELEEREFFLEELGVKEVGLPALVRAVYKQLKLQTYFTTGEKETRA 300
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
WT + G TAPQAAGVIH+DFE+GFI+AETV+Y D+V + A A+EKGL
Sbjct: 301 WTTKIGATAPQAAGVIHTDFERGFIKAETVSYQDYVVSEGFAKAKEKGL 349
>gi|347751719|ref|YP_004859284.1| GTP-binding protein YchF [Bacillus coagulans 36D1]
gi|347584237|gb|AEP00504.1| GTP-binding protein YchF [Bacillus coagulans 36D1]
Length = 366
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGMVEVPDERLEKLTELYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+ +++K K KD ++ AE L K++ A
Sbjct: 120 DPIDDIETINLELILADLETVDKRIGRVEKIAKQKDKEAV----AEYEVLTKLKAAFEAE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V L + ++ +K LLT KP++YVANV E D+ DP +NP+V +V A +
Sbjct: 176 KPARAVELTEDQQKIVKGFQLLTSKPVLYVANVGEDDIQDPSANPYVGKVREYAKQEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E+ EL +E+ +L LG+ ESGL LI++ YSLLGL TYFT+GE E +A
Sbjct: 236 VIVICARIEEEIAELDDDEKKMFLTELGIQESGLDQLIKAAYSLLGLATYFTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AG+IHSDFEKGFIRAETV+Y+D + GS+AAARE G V
Sbjct: 296 WTFKKGMKAPQCAGIIHSDFEKGFIRAETVSYEDLIKYGSVAAAREAGKV 345
>gi|374711020|ref|ZP_09715454.1| GTP-binding protein YchF [Sporolactobacillus inulinus CASD]
Length = 366
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 256/348 (73%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ +
Sbjct: 1 MSLTTGIVGLPNVGKSTLFNAITQAG-AEMANYPFCTIEPNVGIVSVPDARLDRLTEMYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAGLVKGAS+GEGLGN+FL++IR+VD+I VVRCFED +I HV+GK+
Sbjct: 60 PKKTIPTTFEFTDIAGLVKGASKGEGLGNQFLANIRQVDAISHVVRCFEDKNITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLELV +D++Q+ KR+++++K K KD S + E +AL+K+++A G
Sbjct: 120 DPIDDIETINLELVLADMEQVTKRIDRVEKLAKQKDKASII----EFSALQKLKEAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V L D E ++K LT KP++YVANV+E D+A+ NPHV V A +
Sbjct: 176 KPARHVELTDDEEAAVKPFNFLTKKPVLYVANVSEDDVAESDQNPHVQAVKAYARKDGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ EL EE+ +L LG+ SGL LI +Y LLGL TYFT+GEKE +A
Sbjct: 236 VVVISARIESEIAELDGEEKKVFLEELGLDASGLDRLIAKSYDLLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT R G APQAAG+IHSDFE+GFIRAE V+YDD +AAGS AA+E G
Sbjct: 296 WTFRKGTKAPQAAGIIHSDFERGFIRAEIVSYDDLIAAGSENAAKEMG 343
>gi|423589292|ref|ZP_17565378.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD045]
gi|401224531|gb|EJR31085.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD045]
Length = 366
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K KE A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAAYEHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|336115636|ref|YP_004570403.1| GTP-binding protein YchF [Bacillus coagulans 2-6]
gi|335369066|gb|AEH55017.1| GTP-binding protein YchF [Bacillus coagulans 2-6]
Length = 366
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGMVEVPDERLEKLTELYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+ +++K K KD ++ AE L K++ A
Sbjct: 120 DPIDDIETINLELILADLETVDKRIGRVEKIAKQKDKEAV----AEYEVLAKLKAAFEAE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V L + ++ +K LLT KP++YVANV E D+ DP +NP+V +V A +
Sbjct: 176 KPARAVELTEDQQKIVKGFQLLTSKPVLYVANVGEDDIQDPSANPYVGKVREYAKQEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E+ EL +E+ +L LG+ ESGL LI++ YSLLGL TYFT+GE E +A
Sbjct: 236 VIVICARIEEEIAELDDDEKKMFLTELGIRESGLDQLIKAAYSLLGLATYFTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AG+IHSDFEKGFIRAETV+Y+D + GS+AAARE G V
Sbjct: 296 WTFKKGMKAPQCAGIIHSDFEKGFIRAETVSYEDLIEYGSVAAAREAGKV 345
>gi|289578686|ref|YP_003477313.1| GTP-binding protein YchF [Thermoanaerobacter italicus Ab9]
gi|289528399|gb|ADD02751.1| GTP-binding protein YchF [Thermoanaerobacter italicus Ab9]
Length = 363
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 251/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + K Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIEKPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGL KGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLTKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++I LEL+ +D++ IE+R++K K D ++ E LEKI++ L +GKP
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF----EVEVLEKIKKGLDEGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S +
Sbjct: 176 RALQFTEEEKSFVSQLMLLTSKPLMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y D V AGS AAARE GL+
Sbjct: 296 KKGTKAPQAAGKIHSDFEKGFIRAEVISYKDLVKAGSQAAAREMGLM 342
>gi|167629109|ref|YP_001679608.1| GTP-binding protein YchF [Heliobacterium modesticaldum Ice1]
gi|167591849|gb|ABZ83597.1| GTP-binding protein ychf [Heliobacterium modesticaldum Ice1]
Length = 366
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/379 (54%), Positives = 268/379 (70%), Gaps = 15/379 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MPVQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDPRLDKLTEMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA V FVDIAGLV+GAS+GEGLGNKFLSHIREVD+++ VVRCF D D+ HV+GKV
Sbjct: 60 PNRVVPAVVRFVDIAGLVRGASKGEGLGNKFLSHIREVDAVIHVVRCFADPDVTHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
P D+D I LEL+ SDL+ +E+R+++++K K+ D +++ E A L++++ A DG
Sbjct: 120 SPLRDIDTIELELILSDLEAVERRLDRVQKMLKSGDKKAQ----QELAVLQRLRDAFEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ E + ++ LLT KP++YVANV+E DL NP V +V A +G
Sbjct: 176 KPARSIDWTPEEAEIVRNQFLLTSKPVLYVANVSEDDLGK-ADNPLVQDVRARADREGAG 234
Query: 294 RVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ EL EER +L LG+ ESGL LIR TY+LLGL TYFT+G +E +
Sbjct: 235 VVVICAKIEAEIAELTDPEERALFLKDLGLKESGLDRLIRETYALLGLITYFTAGVQEVR 294
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL 412
AWTI G APQAAGVIH+DFE+GFIRAE AYDD VA GS AAREKGL + L
Sbjct: 295 AWTIPRGTKAPQAAGVIHTDFERGFIRAEVTAYDDLVACGSQTAAREKGL-------QRL 347
Query: 413 ASYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 EGKEYVMKDGDVVHFRFNV 366
>gi|229164426|ref|ZP_04292354.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
R309803]
gi|228619031|gb|EEK75929.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
R309803]
Length = 369
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 258/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQTVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|229099902|ref|ZP_04230825.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-29]
gi|229106067|ref|ZP_04236682.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-28]
gi|228677353|gb|EEL31615.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-28]
gi|228683517|gb|EEL37472.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-29]
Length = 369
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 258/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|157694463|ref|YP_001488925.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus pumilus
SAFR-032]
gi|157683221|gb|ABV64365.1| GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 366
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE L K+ A G
Sbjct: 120 DPVSDIETINLELILADLETVEKRLARVSKLAKQKDKEAV----AEFDILSKLMHAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARSV + ++ +KQL LLT KP++YVANV+E ++AD N +V ++ AS +
Sbjct: 176 KSARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADHDGNEYVQQIREFASGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIQASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKV 345
>gi|145342229|ref|XP_001416160.1| Nucleic acid binding GTPase, translation factor, putative
[Ostreococcus lucimarinus CCE9901]
gi|144576385|gb|ABO94453.1| Nucleic acid binding GTPase, translation factor, putative
[Ostreococcus lucimarinus CCE9901]
Length = 419
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/353 (56%), Positives = 250/353 (70%), Gaps = 1/353 (0%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
S SL+ GIVGLPNVGKSTLFNA+VEN +AQAANFPFCTIEPN G V V D RL VL+
Sbjct: 45 SNCRASLKTGIVGLPNVGKSTLFNALVENSRAQAANFPFCTIEPNFGTVPVLDGRLDVLA 104
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
+S ++ VP +VE VDIAGLV+GAS+G+GLGNKFL++IRE D+I+ VVRCF+D++IVHV
Sbjct: 105 RISGTKNIVPTAVEIVDIAGLVEGASEGQGLGNKFLANIRECDAIIHVVRCFDDDNIVHV 164
Query: 171 NGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230
NG VDPK D +IN EL SD+ QI+KR++K++K K K + E L I L
Sbjct: 165 NGSVDPKRDAAIINSELALSDMSQIQKRIDKVRKSKGKVHIDGQTAETEIEILSNILTQL 224
Query: 231 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASD 289
DGK R + LN+ E IK+L LLT KP IY AN+ E DL G +N H + LA+D
Sbjct: 225 EDGKQVRQLKLNEDELFVIKELNLLTAKPCIYAANLPEGDLPTNGATNVHFQALSKLATD 284
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
++G +SAQV AEL +L EER ++L+ +GV G LI Y L L TYFT+GEK
Sbjct: 285 SEAGLCAVSAQVAAELKDLTQEERDDFLSCIGVESDGTKELIEVAYRQLNLLTYFTTGEK 344
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
ET+AWTI+ G TAPQAA VIH+DFEKGFI+AETV YDDFV +G A A+EKG+
Sbjct: 345 ETRAWTIKRGFTAPQAAAVIHTDFEKGFIKAETVHYDDFVTSGGFAGAKEKGV 397
>gi|228961739|ref|ZP_04123342.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228797933|gb|EEM44943.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 369
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 258/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|423471640|ref|ZP_17448384.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-2]
gi|402431451|gb|EJV63519.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-2]
Length = 366
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFATNENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|374583833|ref|ZP_09656927.1| GTP-binding protein YchF [Desulfosporosinus youngiae DSM 17734]
gi|374419915|gb|EHQ92350.1| GTP-binding protein YchF [Desulfosporosinus youngiae DSM 17734]
Length = 366
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/352 (56%), Positives = 258/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVEVPDFRLQKLADMVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G V
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVEGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
+PK D++ I+LEL+ +D++ +EKR E KL K K +QS++ A LE+++
Sbjct: 120 NPKRDIETIDLELILADMESVEKRFERTAKLLKAGDKKAQSEI------ALLERLKVVFN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
GK AR++T D ERD +K LLT+KP++Y ANV+E L+ NP+V +VM +A++
Sbjct: 174 QGKGARTLTFTDEERDLLKGFPLLTLKPVLYAANVSEGGLSTAADNPYVKQVMEIAAEEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + AQ+EAE+ EL ++E+ +L LG+ ESGL LIR + LLGL T+FT+G E
Sbjct: 234 AEVVVVCAQIEAEIAELEADEKDAFLEDLGLEESGLDRLIRVAFHLLGLMTFFTAGPLEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
KAWTI G AP+AAGVIH+DFE GFIRAE V+Y DFV L AR+KGLV
Sbjct: 294 KAWTIYQGTKAPKAAGVIHTDFEHGFIRAEVVSYQDFVEHNGLNGARDKGLV 345
>gi|443631584|ref|ZP_21115765.1| GTPase with RNA binding site [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443349389|gb|ELS63445.1| GTPase with RNA binding site [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 366
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + E L K+++A +
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVF----EFEILSKLKEAFENE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|229082684|ref|ZP_04215138.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock4-2]
gi|229181721|ref|ZP_04309044.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
172560W]
gi|228601754|gb|EEK59252.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
172560W]
gi|228700629|gb|EEL53161.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock4-2]
Length = 369
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 258/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKVVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|323141492|ref|ZP_08076381.1| GTP-binding protein YchF [Phascolarctobacterium succinatutens YIT
12067]
gi|322414072|gb|EFY04902.1| GTP-binding protein YchF [Phascolarctobacterium succinatutens YIT
12067]
Length = 368
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/380 (53%), Positives = 273/380 (71%), Gaps = 13/380 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VLS +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDKRLDVLSDM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
KS+K VPA++ FVDIAGLVKGAS+GEGLGNKFLSHIREVD++ +VVRCFED +I HV G
Sbjct: 60 FKSKKIVPAAMRFVDIAGLVKGASKGEGLGNKFLSHIREVDAVAEVVRCFEDGNITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+D+IN EL +D++ +EKR E+L K K D + KL E+A +EK+ L
Sbjct: 120 SIDPLRDIDIINTELCLADMETVEKRQERLVKLAKTGDKKVKL----EQAVMEKVMAGLS 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DG PAR + L + E++ + +L LLTMKP++Y+ NVAE ++ADP N HV V A++
Sbjct: 176 DGVPARRLGLTEEEQELLGELHLLTMKPVLYITNVAEGEVADPSGNEHVQAVKKYAAEEN 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + +SA++E+E+ ELP EE EYL G+ E+GL LI++ + LLGL T+ T+GE E+
Sbjct: 236 AEVIVVSAKMESEVAELPEEEAKEYLEMAGLEETGLDRLIKAGFKLLGLMTFLTAGEMES 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWTI+ APQAAG IH+DFE+GFIRAE V++DD VA GS AAAREKGLV
Sbjct: 296 RAWTIKLNTKAPQAAGKIHTDFERGFIRAEIVSFDDLVACGSKAAAREKGLV-------R 348
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + ++ + F++
Sbjct: 349 LEGKDYVMQDGDVVEFRFNV 368
>gi|308071170|ref|YP_003872775.1| GTP-dependent nucleic acid-binding protein engD [Paenibacillus
polymyxa E681]
gi|305860449|gb|ADM72237.1| GTP-dependent nucleic acid-binding protein engD [Paenibacillus
polymyxa E681]
Length = 366
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/347 (55%), Positives = 261/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ INLEL+ +D++ ++KR+E+ +K K + ++ E LE+I++ L K
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRK-NMKGGNKQYTQEVE--VLERIKETLYADK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ L+D ER ++ L LLTMKP++Y ANV+E + + SNP+V +V + A +
Sbjct: 177 PARSLELSDEERLIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVRDFAVAENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G AP AAGVIH+DFE+GFIRAE V+Y+D VAAGS+ A+E+G
Sbjct: 297 TIHKGTKAPGAAGVIHTDFERGFIRAEVVSYNDLVAAGSMNGAKERG 343
>gi|229118965|ref|ZP_04248310.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-3]
gi|407707943|ref|YP_006831528.1| 50S ribosomal protein L13 [Bacillus thuringiensis MC28]
gi|423376733|ref|ZP_17354017.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1O-2]
gi|423410291|ref|ZP_17387438.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-3]
gi|423439828|ref|ZP_17416734.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X2-1]
gi|423450011|ref|ZP_17426890.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5O-1]
gi|423462899|ref|ZP_17439667.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-1]
gi|423532256|ref|ZP_17508674.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB2-9]
gi|423542474|ref|ZP_17518864.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB4-10]
gi|423548705|ref|ZP_17525063.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB5-5]
gi|423613619|ref|ZP_17589479.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD107]
gi|423618825|ref|ZP_17594658.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD115]
gi|423621488|ref|ZP_17597266.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD148]
gi|228664490|gb|EEL19986.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-3]
gi|401127309|gb|EJQ35036.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5O-1]
gi|401168721|gb|EJQ75980.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB4-10]
gi|401174822|gb|EJQ82029.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB5-5]
gi|401241684|gb|EJR48071.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD107]
gi|401252301|gb|EJR58562.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD115]
gi|401263243|gb|EJR69372.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD148]
gi|401640978|gb|EJS58703.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1O-2]
gi|401648288|gb|EJS65884.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-3]
gi|402421460|gb|EJV53713.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X2-1]
gi|402422708|gb|EJV54936.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-1]
gi|402465117|gb|EJV96801.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB2-9]
gi|407385628|gb|AFU16129.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis MC28]
Length = 366
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|30023499|ref|NP_835130.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
ATCC 14579]
gi|218234290|ref|YP_002370250.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
B4264]
gi|229051144|ref|ZP_04194688.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH676]
gi|229112888|ref|ZP_04242419.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-15]
gi|229130721|ref|ZP_04259674.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-Cer4]
gi|229148025|ref|ZP_04276364.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST24]
gi|229153634|ref|ZP_04281810.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1550]
gi|296505903|ref|YP_003667603.1| translation-associated GTPase [Bacillus thuringiensis BMB171]
gi|423632790|ref|ZP_17608535.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD154]
gi|423644632|ref|ZP_17620249.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD166]
gi|423651313|ref|ZP_17626883.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD169]
gi|423658387|ref|ZP_17633686.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD200]
gi|29899060|gb|AAP12331.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|218162247|gb|ACK62239.1| GTP-binding protein YchF [Bacillus cereus B4264]
gi|228629820|gb|EEK86473.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1550]
gi|228635450|gb|EEK91941.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST24]
gi|228652738|gb|EEL08623.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-Cer4]
gi|228670567|gb|EEL25880.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-15]
gi|228722207|gb|EEL73608.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH676]
gi|296326955|gb|ADH09883.1| translation-associated GTPase [Bacillus thuringiensis BMB171]
gi|401259436|gb|EJR65612.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD154]
gi|401270264|gb|EJR76287.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD166]
gi|401279365|gb|EJR85294.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD169]
gi|401288117|gb|EJR93879.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD200]
Length = 366
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|228905419|ref|ZP_04069374.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 4222]
gi|228854239|gb|EEM98942.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 4222]
Length = 369
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 257/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A + S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAENENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|339443569|ref|YP_004709574.1| putative GTPase [Clostridium sp. SY8519]
gi|338902970|dbj|BAK48472.1| predicted GTPase [Clostridium sp. SY8519]
Length = 366
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/351 (56%), Positives = 262/351 (74%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V+VPD RL++L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVSVPDERLNLLGELYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED ++VHV+GK+DP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVVHVDGKIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
SD++ INLEL+FSD++ +++R+ K KG D K AE L++I+ L DGK A
Sbjct: 120 ASDIETINLELIFSDIEILDRRIAKGSKGARMDK----KLAAEVEFLKRIKAHLEDGKLA 175
Query: 237 RSVTLNDFERDS--IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
++ L+D E + + L LLT KP+IY ANV+E DLAD G SNPHV V LA + SG
Sbjct: 176 KTFELSDDEDEQAFFRSLNLLTAKPVIYAANVSEDDLADDGASNPHVAAVRELAKEEGSG 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I A++E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL ++ T+GE ET+A
Sbjct: 236 VFVICAKIEEEMAELDDDEKAMFLEELGIKESGLEKLIQASYDLLGLMSFLTAGEDETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTIR G APQAAG IH+DFE+GFIRAE V Y D + GSLAAAREKGLV
Sbjct: 296 WTIRKGTKAPQAAGKIHTDFERGFIRAEVVNYKDLLECGSLAAAREKGLVG 346
>gi|345017951|ref|YP_004820304.1| GTP-binding protein HSR1-like protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033294|gb|AEM79020.1| LOW QUALITY PROTEIN: GTP-binding protein HSR1-related protein
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 363
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 252/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIVAVPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVAVPDERLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++I LEL+ +D++ +E+R++K K D ++ E LEKI++ L +GKP
Sbjct: 120 IRDVEIITLELILADMEVVERRLQKTSKLARNDKKAAF----EVEVLEKIKKGLDEGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S +
Sbjct: 176 RTLQFTEEEKSFVSQLMLLTYKPVMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL L +ER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELASLSDDERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+
Sbjct: 296 KKGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLM 342
>gi|398309087|ref|ZP_10512561.1| GTP-binding protein YchF [Bacillus mojavensis RO-H-1]
Length = 366
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 262/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ + D L K+++A +
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVFEFDI----LSKLKEAFENE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNEYVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|218900616|ref|YP_002449027.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
G9842]
gi|228911314|ref|ZP_04075118.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 200]
gi|228968627|ref|ZP_04129610.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar sotto str. T04001]
gi|402562916|ref|YP_006605640.1| GTP-binding protein YchF [Bacillus thuringiensis HD-771]
gi|423362682|ref|ZP_17340182.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD022]
gi|423565634|ref|ZP_17541909.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A1]
gi|434378635|ref|YP_006613279.1| GTP-binding protein YchF [Bacillus thuringiensis HD-789]
gi|218542496|gb|ACK94890.1| GTP-binding protein YchF [Bacillus cereus G9842]
gi|228791056|gb|EEM38674.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228848332|gb|EEM93182.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 200]
gi|401076956|gb|EJP85301.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD022]
gi|401193316|gb|EJR00322.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A1]
gi|401791568|gb|AFQ17607.1| GTP-binding protein YchF [Bacillus thuringiensis HD-771]
gi|401877192|gb|AFQ29359.1| GTP-binding protein YchF [Bacillus thuringiensis HD-789]
Length = 366
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A + S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAENENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|229072940|ref|ZP_04206136.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
F65185]
gi|365162565|ref|ZP_09358693.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
7_6_55CFAA_CT2]
gi|423410782|ref|ZP_17387902.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3O-2]
gi|423433433|ref|ZP_17410437.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4O-1]
gi|423438873|ref|ZP_17415854.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X12-1]
gi|228710186|gb|EEL62164.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
F65185]
gi|363618098|gb|EHL69454.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
7_6_55CFAA_CT2]
gi|401109514|gb|EJQ17437.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3O-2]
gi|401111851|gb|EJQ19733.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4O-1]
gi|401116000|gb|EJQ23846.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X12-1]
Length = 366
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKVVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|229087962|ref|ZP_04220070.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-44]
gi|228695347|gb|EEL48224.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-44]
Length = 366
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V D + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTDEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENEYVKMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYNDLMENGSMTAAKEAGKV 345
>gi|374320834|ref|YP_005073963.1| GTP-binding protein YchF [Paenibacillus terrae HPL-003]
gi|357199843|gb|AET57740.1| GTP-binding protein YchF [Paenibacillus terrae HPL-003]
Length = 366
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/347 (55%), Positives = 262/347 (75%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ INLEL+ +D++ ++KR+E+ +K K + ++ E LE+I+++L K
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRK-NMKGGNKQYTQEVE--VLERIKESLYADK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSV L+D E+ ++ L LLTMKP++Y ANV+E + + SNP+V +V + A +
Sbjct: 177 PARSVELSDEEQLIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVRDFAVAENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AW
Sbjct: 237 VPISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G AP AAGVIH+DFE+GFIRAE V+Y+D VAAGS+ A+E+G
Sbjct: 297 TIHKGTKAPGAAGVIHTDFERGFIRAEVVSYNDLVAAGSMNGAKERG 343
>gi|206970397|ref|ZP_03231350.1| GTP-binding protein YchF [Bacillus cereus AH1134]
gi|228955726|ref|ZP_04117721.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229193726|ref|ZP_04320667.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 10876]
gi|423427561|ref|ZP_17404592.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-2]
gi|423506636|ref|ZP_17483225.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HD73]
gi|449092549|ref|YP_007424990.1| GTP-binding protein YchF [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|206734974|gb|EDZ52143.1| GTP-binding protein YchF [Bacillus cereus AH1134]
gi|228589751|gb|EEK47629.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 10876]
gi|228803954|gb|EEM50578.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|401108900|gb|EJQ16830.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-2]
gi|402447301|gb|EJV79157.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HD73]
gi|449026306|gb|AGE81469.1| GTP-binding protein YchF [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 366
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|229159035|ref|ZP_04287091.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 4342]
gi|228624454|gb|EEK81225.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 4342]
Length = 366
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+AAA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMAAAKEAGKV 345
>gi|225157618|ref|ZP_03725009.1| GTP-binding protein YchF [Diplosphaera colitermitum TAV2]
gi|224802741|gb|EEG20993.1| GTP-binding protein YchF [Diplosphaera colitermitum TAV2]
Length = 367
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/347 (57%), Positives = 259/347 (74%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPD R +VL ++K+Q
Sbjct: 2 LKAGIVGLPNVGKSTLFNALTRSRKAEAANYPFCTIDPNVGVVTVPDERAYVLQKIAKTQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA++E VDIAGLVKGAS+GEGLGN+FL++IREVD+I+QVVRCFED+DIVH G +DP
Sbjct: 62 VVIPAAIEMVDIAGLVKGASKGEGLGNQFLANIREVDAIVQVVRCFEDSDIVHTMGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++VI ELV +DLD ++KR+EK KK K+ D +++ AE A E++ L KP
Sbjct: 122 VRDIEVITTELVLADLDSVQKRLEKTQKKAKSGDKEAQ----AEAALCERLIPHLDQNKP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA-SDLQSGR 294
A + +N+ E +K LL+ KP++Y NVAE DLA NP V +V + +
Sbjct: 178 ANILPVNEEEARLLKLFQLLSAKPVLYACNVAEGDLATAEENPFVKQVAEFVRTHHDAAY 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA++E+EL EL +EE E+L LGV +SG+ +LIR+TY+LLGL+TYFT+GEKE +AW
Sbjct: 238 VPISARIESELVELSAEEAKEFLKDLGVDDSGVSSLIRATYALLGLQTYFTAGEKEVRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G APQAAGVIH+DFEKGFI+AE V+Y+D V GS AAARE G
Sbjct: 298 TIVKGWKAPQAAGVIHTDFEKGFIKAEVVSYEDLVRLGSTAAAREAG 344
>gi|219121906|ref|XP_002181298.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407284|gb|EEC47221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 363
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 258/349 (73%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ IVGLPNVGKSTLFNA+ E A+AAN+PFCTIEPNVGIV+VPDP+L +L ++K
Sbjct: 1 MKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVSVPDPKLEILKDINK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VPA++EFVD+AGL+KGAS GEGLGN+FL+ IR+ D+++ VVRCFED D+VHV+G +
Sbjct: 61 SVKVVPAALEFVDVAGLIKGASTGEGLGNQFLASIRQCDAVVHVVRCFEDEDVVHVDGSI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D ++INLEL +DL Q+EKR+E+++K + EK+ALEK+ L+ +
Sbjct: 121 DPVRDAELINLELALADLSQVEKRLERVRKDRNASP-------VEKSALEKVAAVLLKDQ 173
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+V L++ E ++IK L LLT K ++Y ANV ++DLA+ N V+ + A +
Sbjct: 174 PARNVVLDEEEENAIKSLGLLTAKKMVYAANVGDADLAN--GNEMVDRLRETAEKEGAKL 231
Query: 295 VTISAQVEAELTELPSEERVEYLASLGV--SESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V +SAQVEAEL EL +R ++L SLGV ++GL L+R Y +LGL+TY+TSG ET+
Sbjct: 232 VVVSAQVEAELVELSVGDRTDFLESLGVKLEDTGLRKLVREAYDILGLQTYYTSGPTETR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTIR G TAP+AAGVIH+DFE+GFIRAETV+YDD VA GS A+ KG
Sbjct: 292 AWTIRKGWTAPKAAGVIHNDFERGFIRAETVSYDDLVACGSEIEAKNKG 340
>gi|228942624|ref|ZP_04105156.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228975554|ref|ZP_04136106.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228982190|ref|ZP_04142479.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis Bt407]
gi|384189564|ref|YP_005575460.1| translation-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410677889|ref|YP_006930260.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis Bt407]
gi|423386957|ref|ZP_17364212.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-2]
gi|423526711|ref|ZP_17503156.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB1-1]
gi|452201985|ref|YP_007482066.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228777542|gb|EEM25820.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis Bt407]
gi|228784164|gb|EEM32191.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228817050|gb|EEM63143.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326943273|gb|AEA19169.1| translation-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401630809|gb|EJS48607.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-2]
gi|402454583|gb|EJV86373.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB1-1]
gi|409177018|gb|AFV21323.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis Bt407]
gi|452107378|gb|AGG04318.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 366
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A + S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAENENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|403669898|ref|ZP_10935074.1| GTP-dependent nucleic acid-binding protein [Kurthia sp. JC8E]
Length = 366
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 256/348 (73%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTEMVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V S EF DIAG+VKGASQGEGLGNKFLSHIREVD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVATSFEFTDIAGIVKGASQGEGLGNKFLSHIREVDAITQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VINLEL+ +DL+ ++KR K+ K K KD +S E A LEK+++A +
Sbjct: 120 DPISDIEVINLELILADLESVDKRYAKVSKLAKQKDKESM----EEAAVLEKVKEAFANE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PARSV L D E+ IK L LLT+KP +YVANV+E ++++ N +V +V A+ +
Sbjct: 176 MPARSVDLTDEEKKIIKGLSLLTLKPALYVANVSEDEVSNSEENDYVKQVREYAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ +L +E+ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAQLDDDEKAMFLEELGIQESGLDKLIKAAYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT R GM APQ AG+IHSDFE+GFIRAET++Y+D V GS +AA+E G
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETISYEDLVEFGSKSAAKEAG 343
>gi|311070632|ref|YP_003975555.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
atrophaeus 1942]
gi|419820982|ref|ZP_14344586.1| GTP-binding protein YchF [Bacillus atrophaeus C89]
gi|310871149|gb|ADP34624.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
atrophaeus 1942]
gi|388474893|gb|EIM11612.1| GTP-binding protein YchF [Bacillus atrophaeus C89]
Length = 366
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 261/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + ++ D L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRIVRVSKLAKQKDKDAVIEFDI----LTKLKEAFEQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + + +KQL LLT KP++YVANV+E ++ADP N +V ++ AS ++
Sbjct: 176 KPARSVEFTEEQNKLVKQLHLLTSKPVLYVANVSEDEVADPSGNEYVAKIREYASGEKAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IH+DFE+GFIRAETVAYDD + GS+AAA+E G V
Sbjct: 296 WTFKRGMKAPECAGIIHTDFERGFIRAETVAYDDLLDGGSMAAAKEAGKV 345
>gi|343521233|ref|ZP_08758201.1| GTP-binding protein YchF [Parvimonas sp. oral taxon 393 str. F0440]
gi|343396439|gb|EGV08976.1| GTP-binding protein YchF [Parvimonas sp. oral taxon 393 str. F0440]
Length = 364
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 274/369 (74%), Gaps = 10/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL+ L+ L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGLVNVPDERLNKLTELYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA +EF DIAGLVKGAS+GEGLGNKFLSHIREVD+I++V+RCFED +IVHV+G+V+P
Sbjct: 60 RTIPAVIEFYDIAGLVKGASKGEGLGNKFLSHIREVDAIVEVIRCFEDENIVHVDGEVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV+ INLEL+ SDL+ +EKR+EK +K K ++S +E+ + LEKI L +GK
Sbjct: 120 LRDVETINLELILSDLELVEKRLEKARKS-LKGNKS-FQEEVD--LLEKILPVLEEGKSI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
RS+ +D E+ +K LL++KPIIYVANV E D+ D G SN +V + + A + SG V
Sbjct: 176 RSLNFDDNEKAILKNFSLLSVKPIIYVANVNEDDMLDEGKSNEYVKVLDDFAKNENSGIV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQ+E E++EL +E++E+L LG+SESG+ LI+ +Y+LLGL ++ T+G +ET+AWT
Sbjct: 236 VISAQIEKEISELEEDEQIEFLNDLGISESGVSKLIKESYNLLGLMSFLTAGPEETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL--- 412
I+ G TA AAG IHSD ++GFIRAE V YDD ++ GS+ AREKGLV L E++
Sbjct: 296 IKIGTTAVNAAGKIHSDIQRGFIRAEIVNYDDLISLGSMVTAREKGLVR-LEGKEYIMQD 354
Query: 413 ASYKYFHWN 421
YF +N
Sbjct: 355 GDVVYFRFN 363
>gi|308175798|ref|YP_003922503.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens DSM 7]
gi|384161686|ref|YP_005543759.1| GTP-binding protein YchF [Bacillus amyloliquefaciens TA208]
gi|384166608|ref|YP_005547987.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens LL3]
gi|384170799|ref|YP_005552177.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens XH7]
gi|307608662|emb|CBI45033.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens DSM 7]
gi|328555774|gb|AEB26266.1| GTP-binding protein YchF [Bacillus amyloliquefaciens TA208]
gi|328914163|gb|AEB65759.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens LL3]
gi|341830078|gb|AEK91329.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens XH7]
Length = 366
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ + D L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVFEFDI----LSKLKEAFEQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KP++YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADPSGNEYVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM AP+ AG+IH+DFE+GFIRAETVAY+D +A G ++ A+E G V
Sbjct: 296 WTFRKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGGMSGAKEAGKV 345
>gi|254446691|ref|ZP_05060166.1| GTP-binding protein YchF [Verrucomicrobiae bacterium DG1235]
gi|198256116|gb|EDY80425.1| GTP-binding protein YchF [Verrucomicrobiae bacterium DG1235]
Length = 380
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/385 (52%), Positives = 275/385 (71%), Gaps = 10/385 (2%)
Query: 42 SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV 101
SS +F+ S ++ L+AGIVGLPNVGKSTLFNA+ KA++AN+PFCTI+PNVG+V V
Sbjct: 2 SSNNQFNGLS--ALMLKAGIVGLPNVGKSTLFNALTRTRKAESANYPFCTIDPNVGVVNV 59
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161
PD RL VL ++ + +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I+QVVRC
Sbjct: 60 PDARLQVLQEIAGTNVVIPAAIEFVDIAGLVAGASKGEGLGNKFLANIRETDAIVQVVRC 119
Query: 162 FEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEK 220
FE++DIVH G VDP D++VIN EL+ SDL+ +E++ EKL KK ++ D ++ A
Sbjct: 120 FENDDIVHSMGDVDPIRDIEVINTELILSDLESVERQKEKLVKKVRSGDKEAA----ATV 175
Query: 221 AALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 280
+E++ +GKPA ++ ++ E++ ++ L LL+ K +IY ANV E DLAD SNP V
Sbjct: 176 ELIERLLPHFNEGKPANTLEMSKEEQEILRGLHLLSSKAVIYAANVMEDDLADAESNPFV 235
Query: 281 NEVMNLASDLQ-SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLG 339
+V + A +G V ISAQ+E+EL +LP EE E+LA LGV +SG+ LIR TYSLLG
Sbjct: 236 TKVRDYAKTAHDAGCVVISAQIESELIDLPPEEAGEFLADLGVEDSGVSLLIRETYSLLG 295
Query: 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
L+TYFT+GEKE +AWT GMTAPQ AGVIH+DFEKGFI+AE V+Y D + GS++AAR+
Sbjct: 296 LKTYFTAGEKEVRAWTFEDGMTAPQCAGVIHTDFEKGFIKAEIVSYLDLSSLGSVSAARD 355
Query: 400 KG--LVSWLHYHEHLASYKYFHWNS 422
G + YH F +N+
Sbjct: 356 AGKYRLEGKEYHFKDGDVALFRFNN 380
>gi|95930453|ref|ZP_01313189.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
gi|95133493|gb|EAT15156.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
Length = 364
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 266/370 (71%), Gaps = 10/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKST+FNA+ G A++AN+PFCTIEPNVGIVAVPD RL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTIFNAITSAG-AESANYPFCTIEPNVGIVAVPDKRLDALAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGN+FL HIR+VD+I ++RCFED+++VHV+G V
Sbjct: 60 PQRVLPTTMEFVDIAGLVKGASKGEGLGNQFLGHIRQVDAIANIIRCFEDDNVVHVDGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+DVI EL +DL+ +EKR +++K K+ D S+ AE ALE ++Q L DG
Sbjct: 120 DPLRDIDVIQTELNLADLESVEKRKTRIQKLAKSGDKASQ----AELVALEALEQCLNDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR L+D +R ++ L L+T+KP++YVANVAE DLA G +PHV +V + A++ +
Sbjct: 176 QPARVAALSDEQRAMVQDLHLITIKPVLYVANVAEDDLA--GEHPHVQKVRDYAAEQGAE 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++E+E+ EL EE+ ++L +G+ +SGL +I++ Y LLGL TYFT+G KE +A
Sbjct: 234 VVIICGKIESEIAELDPEEKSDFLQEMGLDQSGLDQMIQAGYRLLGLITYFTAGVKEVRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL--VSWLHYHEH 411
WT+ APQAAGVIH+DFEKGFIRAE +AYDDF+AA A A+EKGL V Y
Sbjct: 294 WTVPENALAPQAAGVIHTDFEKGFIRAEVIAYDDFIAAKGEAGAKEKGLLRVEGKEYLVK 353
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 354 DGDVMHFRFN 363
>gi|423394326|ref|ZP_17371527.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-1]
gi|401658697|gb|EJS76187.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-1]
Length = 366
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEDEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|393198846|ref|YP_006460688.1| GTPase [Solibacillus silvestris StLB046]
gi|327438177|dbj|BAK14542.1| predicted GTPase [Solibacillus silvestris StLB046]
Length = 366
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TIEPNVG V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIEPNVGSVTVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS GEGLGNKFL+HIREVD+I QVVRCFED +I HV+G V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASTGEGLGNKFLAHIREVDAICQVVRCFEDENITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VINLEL+ +D++ ++KR+ ++ K K KD ++ ++E L+K++ L
Sbjct: 120 NPIDDIEVINLELILADMESVDKRIARVAKMAKQKDKEAMVEE----PILQKLKDVLEAE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D E+ IK L LLT+KP++YVANV+E ++ADP N +V V A+ +
Sbjct: 176 KPARAADLSDDEKKVIKGLHLLTIKPMLYVANVSEDEVADPSENKYVKMVQEYAAAEGAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+T+ A++E E++EL +E+ E+LA LG++ESGL LI+++YSLLGL TYFT+G +E +A
Sbjct: 236 VITVCAKIEEEISELEDDEKKEFLAELGIAESGLDQLIKASYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IHSDFE+GFIRAETVAY D V GS AA+E G V
Sbjct: 296 WTFRKGMKAPQCAGIIHSDFERGFIRAETVAYTDLVEYGSKPAAKEAGRV 345
>gi|118480503|ref|YP_897654.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis str. Al Hakam]
gi|228936755|ref|ZP_04099546.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228988703|ref|ZP_04148788.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229124978|ref|ZP_04254152.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
95/8201]
gi|229187704|ref|ZP_04314840.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BGSC 6E1]
gi|118419728|gb|ABK88147.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
gi|228595772|gb|EEK53456.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BGSC 6E1]
gi|228658479|gb|EEL14145.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
95/8201]
gi|228771015|gb|EEM19496.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228822964|gb|EEM68805.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 369
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/351 (54%), Positives = 258/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 348
>gi|375364499|ref|YP_005132538.1| putative GTP-binding protein YLF2 [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|384267605|ref|YP_005423312.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385267007|ref|ZP_10045094.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. 5B6]
gi|387900746|ref|YP_006331042.1| translation-associated GTPase [Bacillus amyloliquefaciens Y2]
gi|394994131|ref|ZP_10386861.1| GTP-binding protein YchF [Bacillus sp. 916]
gi|421729522|ref|ZP_16168652.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429507377|ref|YP_007188561.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451344776|ref|YP_007443407.1| GTP-binding protein YchF [Bacillus amyloliquefaciens IT-45]
gi|452857684|ref|YP_007499367.1| putative GTPase with RNA binding site [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|371570493|emb|CCF07343.1| putative GTP-binding protein YLF2 [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|380500958|emb|CCG51996.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385151503|gb|EIF15440.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. 5B6]
gi|387174856|gb|AFJ64317.1| translation-associated GTPase [Bacillus amyloliquefaciens Y2]
gi|393805017|gb|EJD66406.1| GTP-binding protein YchF [Bacillus sp. 916]
gi|407076492|gb|EKE49475.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429488967|gb|AFZ92891.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449848534|gb|AGF25526.1| GTP-binding protein YchF [Bacillus amyloliquefaciens IT-45]
gi|452081944|emb|CCP23718.1| putative GTPase with RNA binding site [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 366
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ + D L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVFEFDI----LSKLKEAFEQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KP++YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADPSDNEYVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM AP+ AG+IH+DFE+GFIRAETVAY+D +A G ++ A+E G V
Sbjct: 296 WTFRKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGGMSGAKEAGKV 345
>gi|403068947|ref|ZP_10910279.1| GTP-binding protein YchF [Oceanobacillus sp. Ndiop]
Length = 366
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/352 (55%), Positives = 263/352 (74%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGIVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICQVVRCFVDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+++INLEL+ +DL+ + KR +EKL + K KD+ AE L KI+ L
Sbjct: 120 DPIDDIEIINLELILADLETVNKRFQRVEKLARQKDKDAV------AEHDVLVKIKDGLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R++ + ++ ++ L LLT KP +YVANV+E ++ADP SN +V +V A+
Sbjct: 174 EEKPVRALEFTEDQQKVVRGLHLLTSKPTLYVANVSEEEVADPDSNENVQKVREFAAKEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E E++EL EE+ +L LG++ESGL LI+++YSLLGL TYFT+GE+E
Sbjct: 234 AEVIVICARIEEEISELDPEEKEMFLDDLGITESGLDKLIKASYSLLGLATYFTAGEQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R G+ APQAAG+IH+DFE+GFIRAETV+Y+D V AG++A ARE+G V
Sbjct: 294 RAWTFRKGIKAPQAAGIIHTDFERGFIRAETVSYEDLVDAGNMAHARERGKV 345
>gi|302389209|ref|YP_003825030.1| GTP-binding protein YchF [Thermosediminibacter oceani DSM 16646]
gi|302199837|gb|ADL07407.1| GTP-binding protein YchF [Thermosediminibacter oceani DSM 16646]
Length = 364
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 258/347 (74%), Gaps = 4/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVG+VAVPD RL L+ L Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGVVAVPDRRLDELAKLENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++ FVDIAGLV+GAS+GEGLGNKFLSHIREVD+I VVRCFED ++VHV+G VDP
Sbjct: 60 KVTPATIRFVDIAGLVRGASRGEGLGNKFLSHIREVDAIAHVVRCFEDPNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+F+DL+ + +R++++ K +AK + + E E + LE+++++L PA
Sbjct: 120 IRDIETINLELIFADLETLGRRIDRVSK-QAKSGEKQYLE--ELSVLERLKESLEKNLPA 176
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R+V L + E+ ++QLCLLT KP++YVAN++E DL G N V V A S ++
Sbjct: 177 RAVDLTEEEQKIVRQLCLLTAKPVLYVANISEDDLIAGGENELVKRVREYAEKEGSQVIS 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+ A+VEAEL +LP E+VE L++ G+ E GL +IR+ Y LLGL T+FT+G KE +AWTI
Sbjct: 237 LCAKVEAELADLPDPEKVELLSAYGLDEPGLNRVIRAGYRLLGLITFFTAGPKEVRAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
R G APQAAG IHSDFE+GFIRAE ++Y D +A GS AA+EKGLV
Sbjct: 297 REGTKAPQAAGRIHSDFERGFIRAEVISYADLMACGSQQAAKEKGLV 343
>gi|430756770|ref|YP_007207422.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430021290|gb|AGA21896.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 366
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVF----EFEILSKLKEAFESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV L + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVELTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|229000264|ref|ZP_04159833.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock3-17]
gi|229007788|ref|ZP_04165374.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock1-4]
gi|228753465|gb|EEM02917.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock1-4]
gi|228759596|gb|EEM08573.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock3-17]
Length = 369
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 257/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEA 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENEYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKKGMKAPQCAGVIHTDFERGFIRAETVSYDDLMENGSMTAAKEAGKV 348
>gi|340357085|ref|ZP_08679713.1| GTP-dependent nucleic acid-binding protein EngD [Sporosarcina
newyorkensis 2681]
gi|339618763|gb|EGQ23354.1| GTP-dependent nucleic acid-binding protein EngD [Sporosarcina
newyorkensis 2681]
Length = 373
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 8 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVV 66
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D +I HV GKV
Sbjct: 67 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFVDENITHVAGKV 126
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D+++INLEL+ +D++ +EKR+ ++ K K KD + ++E L K+++ +
Sbjct: 127 NPIDDIEIINLELILADMESVEKRLARVSKMAKQKDKAAMIEE----PILLKLKEGFENE 182
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARSV L D E +K + LLT+KP++YVANV+E ++AD +NP+V +V + A+ +
Sbjct: 183 LAARSVDLTDDEYQVVKGMHLLTIKPMLYVANVSEDEIADADNNPYVQQVRDFAAKDNAE 242
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL +E+ +L LG+ ESGL LI++TY+LLGL TYFT+G +E +A
Sbjct: 243 VIVVCAKIEEEMAELEDDEKEMFLEELGIKESGLDQLIKATYNLLGLATYFTAGVQEVRA 302
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AGVIH+DFE+GFIRAETVAYDD V GS+AAA+E G V
Sbjct: 303 WTFRKGMKAPQCAGVIHTDFERGFIRAETVAYDDLVEHGSMAAAKEAGKV 352
>gi|224117620|ref|XP_002317624.1| predicted protein [Populus trichocarpa]
gi|222860689|gb|EEE98236.1| predicted protein [Populus trichocarpa]
Length = 299
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/240 (80%), Positives = 215/240 (89%)
Query: 145 FLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204
F+ ++ +LQVV CF+DNDIVHVNGKVDPK D DVINLELVFSDLDQ+EKR+EKLKK
Sbjct: 3 FICVLKACSLLLQVVLCFDDNDIVHVNGKVDPKWDFDVINLELVFSDLDQVEKRLEKLKK 62
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVA 264
GKAKDSQSKLKEDAEK+A+E+I+ ALMDGKPARSVTL DFE+D++ LC+LTMKP+IYV
Sbjct: 63 GKAKDSQSKLKEDAEKSAMERIRHALMDGKPARSVTLTDFEKDAVNHLCMLTMKPVIYVE 122
Query: 265 NVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSE 324
NVAESDLAD NP+V EVMNLAS+LQSG VTISAQVE+ LTELP EER E+L SLGVSE
Sbjct: 123 NVAESDLADSAINPNVKEVMNLASELQSGLVTISAQVESGLTELPFEERSEFLNSLGVSE 182
Query: 325 SGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVA 384
S LGNLIR+TYSLLGLRTYFTSGEKETKAWTI +GMTAPQAAGVIHSDFEKGFIRAETV+
Sbjct: 183 SCLGNLIRATYSLLGLRTYFTSGEKETKAWTILSGMTAPQAAGVIHSDFEKGFIRAETVS 242
>gi|228994194|ref|ZP_04154094.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
pseudomycoides DSM 12442]
gi|228765646|gb|EEM14300.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
pseudomycoides DSM 12442]
Length = 366
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENEYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKKGMKAPQCAGVIHTDFERGFIRAETVSYDDLMENGSMTAAKEAGKV 345
>gi|51894084|ref|YP_076775.1| GTP-dependent nucleic acid-binding protein EngD [Symbiobacterium
thermophilum IAM 14863]
gi|51857773|dbj|BAD41931.1| highly conserved GTP-binding protein [Symbiobacterium thermophilum
IAM 14863]
Length = 367
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/351 (57%), Positives = 260/351 (74%), Gaps = 7/351 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA+ G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MGLSIGIVGLPNVGKSTLFNAITRAG-AEAANYPFCTIEPNVGVVDVPDARLPVLAKMFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + VP S++F+DIAG+VKGAS+GEGLGNKFL HIREVD+I VVRCFED ++ HV+G+V
Sbjct: 60 SARIVPTSIKFIDIAGIVKGASKGEGLGNKFLHHIREVDAIAHVVRCFEDPNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDG 233
DP SD++VINLEL+ +DL+ IE+R E+ AK +++ +KE E L ++++AL G
Sbjct: 120 DPLSDIEVINLELILADLETIERRYER----SAKAAKAGVKEAQVEHGLLSRLKEALEAG 175
Query: 234 KPARSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
PARSV + D E ++ L L+T KP++Y+ANVAE +A+P + P+V +V LA S
Sbjct: 176 LPARSVAIEGDEEARVLRDLHLITAKPVMYIANVAEEHVANPFAVPYVAQVKELADREGS 235
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISA++E+EL E+ EER +LA LG++ESGL +IR Y LL L ++ T+GE E +
Sbjct: 236 EVVPISARIESELAEMDDEERAAFLADLGLAESGLDRVIRHGYHLLNLISFLTAGETEAR 295
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTIR G APQAAGVIHSD E+GFIRAE V+YDD V AGS+AAARE G V
Sbjct: 296 AWTIRRGTKAPQAAGVIHSDMERGFIRAEVVSYDDLVTAGSMAAAREAGKV 346
>gi|190572921|ref|YP_001970766.1| GTP-dependent nucleic acid-binding protein EngD [Stenotrophomonas
maltophilia K279a]
gi|424667181|ref|ZP_18104206.1| GTP-dependent nucleic acid-binding protein engD [Stenotrophomonas
maltophilia Ab55555]
gi|190010843|emb|CAQ44452.1| putative ATP/GTP-binding protein [Stenotrophomonas maltophilia
K279a]
gi|401069316|gb|EJP77838.1| GTP-dependent nucleic acid-binding protein engD [Stenotrophomonas
maltophilia Ab55555]
Length = 363
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAGIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+
Sbjct: 174 DGKAGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|154688196|ref|YP_001423357.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens FZB42]
gi|154354047|gb|ABS76126.1| EngD [Bacillus amyloliquefaciens FZB42]
Length = 366
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ + D L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVFEFDI----LSKLKEAFEQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KP++YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADPSDNGYVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM AP+ AG+IH+DFE+GFIRAETVAY+D +A G ++ A+E G V
Sbjct: 296 WTFRKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGGMSGAKEAGKV 345
>gi|238926218|ref|ZP_04657978.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
gi|304436740|ref|ZP_07396708.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|238885898|gb|EEQ49536.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
gi|304370220|gb|EFM23877.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 368
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 259/350 (74%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G +D
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGGID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D+I EL +DL+ +EKR+ K+ K K+ ++K AE AALE++++AL G+
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRLVKVTKLLKSGSKEAK----AEHAALERLKEALDAGR 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG 293
PAR V L++ E+ ++ L LLT KPI+Y+ANV E + A NPHV +V A+ +
Sbjct: 178 PAREVELSEEEQGILRDLNLLTRKPILYIANVGEDEAATADAENPHVQKVKEYAARTGAQ 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VT+SA++E E+ EL EE +L LG++ESGL LI ++LLGL+T+ T+GE E +A
Sbjct: 238 VVTVSARLEEEIAELDDEEAAAFLEDLGLAESGLDRLIHGAFALLGLQTFLTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGLV
Sbjct: 298 WTITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLV 347
>gi|65317456|ref|ZP_00390415.1| COG0012: Predicted GTPase, probable translation factor [Bacillus
anthracis str. A2012]
Length = 346
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|167037215|ref|YP_001664793.1| GTP-dependent nucleic acid-binding protein EngD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040645|ref|YP_001663630.1| GTP-dependent nucleic acid-binding protein EngD [Thermoanaerobacter
sp. X514]
gi|300914686|ref|ZP_07132002.1| GTP-binding protein YchF [Thermoanaerobacter sp. X561]
gi|307724080|ref|YP_003903831.1| GTP-binding protein YchF [Thermoanaerobacter sp. X513]
gi|320115634|ref|YP_004185793.1| GTP-binding protein YchF [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166854885|gb|ABY93294.1| GTP-binding protein YchF [Thermoanaerobacter sp. X514]
gi|166856049|gb|ABY94457.1| GTP-binding protein YchF [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|300889621|gb|EFK84767.1| GTP-binding protein YchF [Thermoanaerobacter sp. X561]
gi|307581141|gb|ADN54540.1| GTP-binding protein YchF [Thermoanaerobacter sp. X513]
gi|319928725|gb|ADV79410.1| GTP-binding protein YchF [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 363
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 251/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIVAVPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVAVPDKRLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV++I LEL+ +D++ +E+R++K K D ++ E LEKI++ L +GKP
Sbjct: 120 IRDVEIITLELILADMEVVERRLQKTSKLARNDKKAAF----ELEILEKIKKGLNEGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S +
Sbjct: 176 RALQFTEEEKSFVCQLMLLTSKPVMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI
Sbjct: 236 ISAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y+D V AGS A ARE GL+
Sbjct: 296 KKGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQATAREMGLM 342
>gi|335049086|ref|ZP_08542097.1| GTP-binding protein YchF [Megasphaera sp. UPII 199-6]
gi|333764531|gb|EGL41925.1| GTP-binding protein YchF [Megasphaera sp. UPII 199-6]
Length = 368
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 264/373 (70%), Gaps = 10/373 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDARLRTLTNM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+K +PA + FVDIAGLV GAS+GEGLGNKFLSHIRE D+I +VVRCFED++I HV+G
Sbjct: 60 YHPKKTIPAVMRFVDIAGLVAGASKGEGLGNKFLSHIRETDAIAEVVRCFEDDNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
VDP D+D+IN EL +DL+ +++R+++L K + D +K AE A L+KI AL
Sbjct: 120 SVDPLRDIDIINTELCLADLETVQRRVDRLAKIAQCGDKAAK----AELAVLQKILTALE 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
G+P R V L D E+ ++K+L LLT+KPI+Y+ANVAE + A P +NP V ++ A+
Sbjct: 176 AGEPVRKVALQDEEKQTVKELNLLTIKPILYIANVAEDEAAQPDANPLVQKLTAFAAAEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAE+ ELP +E +L LG+SESGL LI++ YSLLGL +FT+G E
Sbjct: 236 AQVVAVSAKIEAEIAELPDDEAAAFLEELGLSESGLTKLIKAGYSLLGLINFFTAGADEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWTI G A +AAG IH+D E+GFIRAE V+Y D +A G AA+EKGLV L E+
Sbjct: 296 RAWTIVKGTKAQKAAGKIHTDIERGFIRAEIVSYTDLIACGGEQAAKEKGLVR-LEGKEY 354
Query: 412 L---ASYKYFHWN 421
L YF +N
Sbjct: 355 LMQDGDVTYFRFN 367
>gi|392395684|ref|YP_006432286.1| GTP-binding protein YchF [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526762|gb|AFM02493.1| GTP-binding protein YchF [Desulfitobacterium dehalogenans ATCC
51507]
Length = 366
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/349 (57%), Positives = 262/349 (75%), Gaps = 4/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL VLS +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVQVPDARLQVLSEMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED+++VHV G V
Sbjct: 60 PDKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNVVHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DPK D+D I LEL+ +D++ +EKR+E+ K + L AE A L ++++ L G
Sbjct: 120 DPKRDIDTIQLELILADMESVEKRLERSAKLLKSGDKKAL---AEVALLNRLKETLDAGL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
ARS+ +D ER+ +K LL+MKP++Y ANV+E ++ADP +NP+V +V +A+ S
Sbjct: 177 AARSLEFSDEERELLKSFPLLSMKPVLYAANVSEEEIADPDNNPYVRKVREIAAAENSEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A++EAE+ EL E+ +L LG++ESGL LIR+ + LLGL TYFT+G+ E +AW
Sbjct: 237 VVVCAKIEAEIAELEEGEKKVFLEDLGLAESGLDRLIRAAFHLLGLMTYFTAGQIEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
IR GM APQAAGVIH+DFE+GFIRAE V+Y DFV G L A+EKGLV
Sbjct: 297 EIRRGMKAPQAAGVIHTDFERGFIRAEVVSYKDFVENGGLNGAKEKGLV 345
>gi|333896882|ref|YP_004470756.1| GTP-binding protein YchF [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112147|gb|AEF17084.1| GTP-binding protein YchF [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 363
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/347 (54%), Positives = 253/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDKRLNELANIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCF+D++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFDDSNITHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++I LEL+ +DL+ +EKR+ K K D + E LEKI++ L DGKP
Sbjct: 120 IRDIEIITLELILADLEVVEKRIAKTSKYAKNDKTAAF----ELNVLEKIKKTLDDGKPI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ +D E + QL LLT KP++Y AN++E DL N +V ++ + A + +S +
Sbjct: 176 RTMDFDDEELSFVNQLMLLTSKPVMYAANISEDDLISKSENEYVKKLKDFAKNEKSDVIV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI
Sbjct: 236 ISAKIEEELSSLPDEEKYELLSEYGLEEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y D+V +G A+EKGL+
Sbjct: 296 KRGTKAPQAAGKIHSDFEKGFIRAEVISYKDYVESGGETPAKEKGLM 342
>gi|423557011|ref|ZP_17533314.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MC67]
gi|423671023|ref|ZP_17646052.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM034]
gi|401193786|gb|EJR00788.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MC67]
gi|401294517|gb|EJS00145.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM034]
Length = 366
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFATNENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYTDLMTNGSMTAAKEAGKV 345
>gi|290969065|ref|ZP_06560600.1| GTP-binding protein YchF [Megasphaera genomosp. type_1 str. 28L]
gi|290781021|gb|EFD93614.1| GTP-binding protein YchF [Megasphaera genomosp. type_1 str. 28L]
Length = 368
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 264/373 (70%), Gaps = 10/373 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDTRLRTLTDM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+K +PA + FVDIAGLV GAS+GEGLGNKFLSHIRE D+I +VVRCFED++I HV+G
Sbjct: 60 YHPKKTIPAVMRFVDIAGLVAGASKGEGLGNKFLSHIRETDAIAEVVRCFEDDNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
VDP D+D+IN EL +DL+ +++R+++L K + D +K AE A L+KI AL
Sbjct: 120 SVDPLRDIDIINTELCLADLETVQRRVDRLAKIAQCGDKAAK----AELAVLQKILTALE 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
G+P R V L D E+ ++K+L LLT+KPI+Y+ANVAE + A P +NP V ++ A+
Sbjct: 176 AGEPVRKVALQDEEKQTVKELNLLTIKPILYIANVAEDEAAQPDANPLVQKLTAFAAAEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAE+ ELP +E +L LG+SESGL LI++ YSLLGL +FT+G E
Sbjct: 236 AQVVAVSAKIEAEIAELPDDEAAAFLEELGLSESGLTKLIKAGYSLLGLINFFTAGADEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWTI G A +AAG IH+D E+GFIRAE V+Y D +A G AA+EKGLV L E+
Sbjct: 296 RAWTIVKGTKAQKAAGKIHTDIERGFIRAEIVSYTDLIACGGEQAAKEKGLVR-LEGKEY 354
Query: 412 L---ASYKYFHWN 421
L YF +N
Sbjct: 355 LMQDGDVTYFRFN 367
>gi|406667880|ref|ZP_11075631.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
isronensis B3W22]
gi|405384287|gb|EKB43735.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
isronensis B3W22]
Length = 366
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 260/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TIEPNVG V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIEPNVGSVTVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS GEGLGNKFL+HIREVD+I QVVRCFED +I HV+G V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASTGEGLGNKFLAHIREVDAICQVVRCFEDENITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VINLEL+ +D++ ++KR+ ++ K K KD ++ ++E L+K++ L
Sbjct: 120 NPIDDIEVINLELILADMESVDKRIARVAKMAKQKDKEAMVEE----PILQKLKDVLEAE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D E+ IK L LLT+KP++YVANV+E ++ADP N +V V A+ +
Sbjct: 176 KPARAADLSDDEKKVIKGLHLLTIKPMLYVANVSEDEVADPSENKYVKMVQEYAAAEGAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+T+ A++E E++EL +E+ E+LA LG++ESGL LI+++YSLLGL TYFT+G +E +A
Sbjct: 236 VITVCAKIEEEISELEDDEKKEFLAELGIAESGLDQLIKASYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAETVAY D V GS AA+E G V
Sbjct: 296 WTFRKGMKAPQCAGIIHTDFERGFIRAETVAYTDLVEYGSKPAAKEAGRV 345
>gi|30265493|ref|NP_847870.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Ames]
gi|47531061|ref|YP_022410.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. 'Ames Ancestor']
gi|49188312|ref|YP_031565.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Sterne]
gi|49480471|ref|YP_039465.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52145283|ref|YP_086740.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
E33L]
gi|165873025|ref|ZP_02217646.1| GTP-binding protein YchF [Bacillus anthracis str. A0488]
gi|167635080|ref|ZP_02393397.1| GTP-binding protein YchF [Bacillus anthracis str. A0442]
gi|170689478|ref|ZP_02880668.1| GTP-binding protein YchF [Bacillus anthracis str. A0465]
gi|170707556|ref|ZP_02898009.1| GTP-binding protein YchF [Bacillus anthracis str. A0389]
gi|190569303|ref|ZP_03022197.1| GTP-binding protein YchF [Bacillus anthracis str. Tsiankovskii-I]
gi|196041950|ref|ZP_03109237.1| GTP-binding protein YchF [Bacillus cereus NVH0597-99]
gi|196045504|ref|ZP_03112735.1| GTP-binding protein YchF [Bacillus cereus 03BB108]
gi|206975804|ref|ZP_03236715.1| GTP-binding protein YchF [Bacillus cereus H3081.97]
gi|217962968|ref|YP_002341546.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
AH187]
gi|218906667|ref|YP_002454501.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
AH820]
gi|222098952|ref|YP_002533010.1| gtp-dependent nucleic acid-binding protein engd [Bacillus cereus
Q1]
gi|225867456|ref|YP_002752834.1| GTP-binding protein YchF [Bacillus cereus 03BB102]
gi|227818244|ref|YP_002818253.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. CDC 684]
gi|228918087|ref|ZP_04081615.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228930481|ref|ZP_04093481.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228949197|ref|ZP_04111465.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229094586|ref|ZP_04225653.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-42]
gi|229142224|ref|ZP_04270748.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST26]
gi|229199605|ref|ZP_04326265.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1293]
gi|229601860|ref|YP_002869684.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. A0248]
gi|254687084|ref|ZP_05150942.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. CNEVA-9066]
gi|254724133|ref|ZP_05185918.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. A1055]
gi|254742141|ref|ZP_05199828.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Kruger B]
gi|254755949|ref|ZP_05207981.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Vollum]
gi|254761371|ref|ZP_05213393.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Australia 94]
gi|300118823|ref|ZP_07056543.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
SJ1]
gi|375287496|ref|YP_005107935.1| GTP-binding protein YchF [Bacillus cereus NC7401]
gi|376269391|ref|YP_005122103.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus cereus
F837/76]
gi|384183342|ref|YP_005569104.1| GTP-binding protein YchF [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|386739339|ref|YP_006212520.1| GTP-binding protein [Bacillus anthracis str. H9401]
gi|402554421|ref|YP_006595692.1| GTP-binding protein YchF [Bacillus cereus FRI-35]
gi|421508125|ref|ZP_15955041.1| GTP-binding protein YchF [Bacillus anthracis str. UR-1]
gi|421640472|ref|ZP_16081055.1| GTP-binding protein YchF [Bacillus anthracis str. BF1]
gi|423355958|ref|ZP_17333582.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
IS075]
gi|423374955|ref|ZP_17352292.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AND1407]
gi|423554074|ref|ZP_17530400.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ISP3191]
gi|423571367|ref|ZP_17547610.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A12]
gi|423572865|ref|ZP_17548984.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-D12]
gi|423608183|ref|ZP_17584075.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD102]
gi|30260171|gb|AAP29356.1| GTP-binding protein YchF [Bacillus anthracis str. Ames]
gi|47506209|gb|AAT34885.1| GTP-binding protein YchF [Bacillus anthracis str. 'Ames Ancestor']
gi|49182239|gb|AAT57615.1| GTP-binding protein YchF [Bacillus anthracis str. Sterne]
gi|49332027|gb|AAT62673.1| conserved GTP-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51978752|gb|AAU20302.1| conserved GTP-binding protein [Bacillus cereus E33L]
gi|164711237|gb|EDR16793.1| GTP-binding protein YchF [Bacillus anthracis str. A0488]
gi|167529554|gb|EDR92304.1| GTP-binding protein YchF [Bacillus anthracis str. A0442]
gi|170127552|gb|EDS96426.1| GTP-binding protein YchF [Bacillus anthracis str. A0389]
gi|170666580|gb|EDT17353.1| GTP-binding protein YchF [Bacillus anthracis str. A0465]
gi|190559610|gb|EDV13601.1| GTP-binding protein YchF [Bacillus anthracis str. Tsiankovskii-I]
gi|196023711|gb|EDX62387.1| GTP-binding protein YchF [Bacillus cereus 03BB108]
gi|196027205|gb|EDX65825.1| GTP-binding protein YchF [Bacillus cereus NVH0597-99]
gi|206745898|gb|EDZ57294.1| GTP-binding protein YchF [Bacillus cereus H3081.97]
gi|217064503|gb|ACJ78753.1| GTP-binding protein YchF [Bacillus cereus AH187]
gi|218538267|gb|ACK90665.1| GTP-binding protein YchF [Bacillus cereus AH820]
gi|221243011|gb|ACM15721.1| conserved GTP-binding protein [Bacillus cereus Q1]
gi|225790039|gb|ACO30256.1| GTP-binding protein YchF [Bacillus cereus 03BB102]
gi|227003405|gb|ACP13148.1| GTP-binding protein YchF [Bacillus anthracis str. CDC 684]
gi|228583879|gb|EEK42037.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1293]
gi|228641242|gb|EEK97549.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST26]
gi|228688833|gb|EEL42664.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-42]
gi|228810480|gb|EEM56833.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228829200|gb|EEM74837.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228841567|gb|EEM86683.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229266268|gb|ACQ47905.1| GTP-binding protein YchF [Bacillus anthracis str. A0248]
gi|298723791|gb|EFI64513.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
SJ1]
gi|324329426|gb|ADY24686.1| GTP-binding protein YchF [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358356023|dbj|BAL21195.1| GTP-binding protein YchF [Bacillus cereus NC7401]
gi|364515191|gb|AEW58590.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus cereus
F837/76]
gi|384389190|gb|AFH86851.1| GTP-binding protein [Bacillus anthracis str. H9401]
gi|401080905|gb|EJP89187.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
IS075]
gi|401093171|gb|EJQ01286.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AND1407]
gi|401181507|gb|EJQ88655.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ISP3191]
gi|401201188|gb|EJR08064.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A12]
gi|401216334|gb|EJR23046.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-D12]
gi|401238192|gb|EJR44633.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD102]
gi|401795631|gb|AFQ09490.1| GTP-binding protein YchF [Bacillus cereus FRI-35]
gi|401821928|gb|EJT21082.1| GTP-binding protein YchF [Bacillus anthracis str. UR-1]
gi|403392425|gb|EJY89678.1| GTP-binding protein YchF [Bacillus anthracis str. BF1]
Length = 366
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|418030664|ref|ZP_12669149.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471723|gb|EHA31836.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 376
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 11 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 69
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 70 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 129
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + E L K+++A
Sbjct: 130 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVF----EFEILSKLKEAFESE 185
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 186 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 245
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 246 VIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRA 305
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 306 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 355
>gi|449096553|ref|YP_007429044.1| GTP-dependent nucleic acid-binding protein [Bacillus subtilis XF-1]
gi|449030468|gb|AGE65707.1| GTP-dependent nucleic acid-binding protein [Bacillus subtilis XF-1]
Length = 376
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 11 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 69
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 70 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 129
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + E L K+++A
Sbjct: 130 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVF----EFEILSKLKEAFESE 185
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 186 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 245
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 246 VIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRA 305
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 306 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 355
>gi|16081144|ref|NP_391972.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. subtilis str. 168]
gi|221312074|ref|ZP_03593921.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221316399|ref|ZP_03598204.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221321312|ref|ZP_03602606.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221325595|ref|ZP_03606889.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|321313652|ref|YP_004205939.1| GTP-binding protein YchF [Bacillus subtilis BSn5]
gi|384177748|ref|YP_005559133.1| hypothetical protein I33_4261 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|428281772|ref|YP_005563507.1| translation-associated GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|452912444|ref|ZP_21961072.1| 50S ribosome-binding GTPase family protein [Bacillus subtilis
MB73/2]
gi|586848|sp|P37518.1|ENGD_BACSU RecName: Full=GTP-dependent nucleic acid-binding protein EngD
gi|467376|dbj|BAA05222.1| unknown [Bacillus subtilis]
gi|2636639|emb|CAB16129.1| putative GTPase with RNA binding site [Bacillus subtilis subsp.
subtilis str. 168]
gi|291486729|dbj|BAI87804.1| translation-associated GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|320019926|gb|ADV94912.1| GTP-binding protein YchF [Bacillus subtilis BSn5]
gi|349596972|gb|AEP93159.1| hypothetical protein I33_4261 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|407962946|dbj|BAM56186.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
BEST7613]
gi|407966958|dbj|BAM60197.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
BEST7003]
gi|452117472|gb|EME07866.1| 50S ribosome-binding GTPase family protein [Bacillus subtilis
MB73/2]
Length = 366
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVF----EFEILSKLKEAFESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|42784671|ref|NP_981918.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
ATCC 10987]
gi|42740603|gb|AAS44526.1| GTP-binding protein YchF [Bacillus cereus ATCC 10987]
Length = 366
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|402778262|ref|YP_006632206.1| GTPase with RNA binding site [Bacillus subtilis QB928]
gi|402483441|gb|AFQ59950.1| Putative GTPase with RNA binding site [Bacillus subtilis QB928]
Length = 395
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 30 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 88
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 89 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 148
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD + E L K+++A
Sbjct: 149 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVF----EFEILSKLKEAFESE 204
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 205 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 264
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 265 VIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVRA 324
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 325 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 374
>gi|423451276|ref|ZP_17428129.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X1-1]
gi|423490623|ref|ZP_17467305.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BtB2-4]
gi|423496347|ref|ZP_17472991.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER057]
gi|423496859|ref|ZP_17473476.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER074]
gi|423597268|ref|ZP_17573268.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD078]
gi|423659673|ref|ZP_17634842.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM022]
gi|423672754|ref|ZP_17647693.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM062]
gi|401146284|gb|EJQ53800.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X1-1]
gi|401149529|gb|EJQ57000.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER057]
gi|401163279|gb|EJQ70626.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER074]
gi|401238800|gb|EJR45232.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD078]
gi|401304301|gb|EJS09858.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM022]
gi|401311268|gb|EJS16575.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM062]
gi|402428968|gb|EJV61059.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BtB2-4]
Length = 366
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYTDLMTNGSMTAAKEAGKV 345
>gi|323450780|gb|EGB06660.1| hypothetical protein AURANDRAFT_54165 [Aureococcus anophagefferens]
Length = 398
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/364 (56%), Positives = 260/364 (71%), Gaps = 8/364 (2%)
Query: 42 SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV 101
S+R F I+M L+ GIVGLPNVGKSTLFNA+ E+ A+AAN+PFCTIEPNVG+V+V
Sbjct: 20 SARPSFRRGRTITMGLKTGIVGLPNVGKSTLFNALTEDVNAEAANYPFCTIEPNVGVVSV 79
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161
PD RL LS + S+K V S+EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I+ VVRC
Sbjct: 80 PDARLAALSDIHDSEKTVATSLEFVDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRC 139
Query: 162 FEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKA 221
F+D +++HV+G +DP DVDVI LEL SDL Q+EKR E+ KD+++ E
Sbjct: 140 FDDENVIHVDGSIDPLRDVDVIELELALSDLAQVEKRRER----AGKDAKTGKAPPCEIP 195
Query: 222 ALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVN 281
AL+K+ AL +G AR V L D E +++K L LLT+KP+IY NVA+ DLA+ N V
Sbjct: 196 ALDKLAAALDEGTQARDVALEDKELEAVKGLNLLTIKPVIYACNVADDDLAE--GNAMVE 253
Query: 282 EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVS--ESGLGNLIRSTYSLLG 339
+V A++ V +SAQVE+EL L +E+R E+L +LGVS GL L+RS Y LG
Sbjct: 254 KVRAKAAETGETVVVVSAQVESELVTLEAEDRDEFLDALGVSLEACGLRALVRSAYDALG 313
Query: 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
L TY+TSG ET+AWTI G APQAAGVIH DFE+GFI+AETVAYD VAAG A+E
Sbjct: 314 LITYYTSGPTETRAWTIVDGWRAPQAAGVIHGDFERGFIKAETVAYDALVAAGDEKVAKE 373
Query: 400 KGLV 403
+GLV
Sbjct: 374 QGLV 377
>gi|386760804|ref|YP_006234021.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. JS]
gi|384934087|gb|AFI30765.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. JS]
Length = 366
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 259/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++ INLEL+ +D++ +EKR+ KL K K KD+ + + L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVYEFE------ILSKLKEAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+
Sbjct: 174 SEKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E
Sbjct: 234 AEVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 294 RAWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|363898938|ref|ZP_09325450.1| GTP-binding protein YchF [Oribacterium sp. ACB1]
gi|395209425|ref|ZP_10398519.1| GTP-binding protein YchF [Oribacterium sp. ACB8]
gi|361959554|gb|EHL12834.1| GTP-binding protein YchF [Oribacterium sp. ACB1]
gi|394705056|gb|EJF12585.1| GTP-binding protein YchF [Oribacterium sp. ACB8]
Length = 364
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/348 (56%), Positives = 258/348 (74%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGVVAVPDERLQLLSDLYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I+ VVRCF+D++++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLGNIRETDAIVHVVRCFDDDNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I LEL+FSDL+ +++RM+K KK D +K E A LEK+ L +GK A
Sbjct: 120 IRDIETIELELIFSDLEVLDRRMQKTKKLANNDKDAK----KEYALLEKLHTHLEEGKLA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
+ + + + + L LLT KP+IY NVAE LAD G SN +V +V A S
Sbjct: 176 INFEAEEDDAELLDSLGLLTRKPVIYACNVAEESLADDGASNLYVQKVREYAKKNHSESF 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQ+E E++EL EE+ EYL SLG+SESGL ++R++YSLLGL +Y T+GEKET+AWT
Sbjct: 236 VISAQIEQEISELSDEEKGEYLESLGLSESGLDKIVRASYSLLGLMSYLTAGEKETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKGLV
Sbjct: 296 IKKGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDNGSLSAAREKGLV 343
>gi|167757570|ref|ZP_02429697.1| hypothetical protein CLORAM_03120 [Clostridium ramosum DSM 1402]
gi|237735126|ref|ZP_04565607.1| translation-associated GTPase [Mollicutes bacterium D7]
gi|365831949|ref|ZP_09373493.1| GTP-binding protein YchF [Coprobacillus sp. 3_3_56FAA]
gi|374627142|ref|ZP_09699550.1| GTP-binding protein YchF [Coprobacillus sp. 8_2_54BFAA]
gi|167702567|gb|EDS17146.1| GTP-binding protein YchF [Clostridium ramosum DSM 1402]
gi|229381902|gb|EEO31993.1| translation-associated GTPase [Coprobacillus sp. D7]
gi|365261161|gb|EHM91089.1| GTP-binding protein YchF [Coprobacillus sp. 3_3_56FAA]
gi|373913687|gb|EHQ45524.1| GTP-binding protein YchF [Coprobacillus sp. 8_2_54BFAA]
Length = 366
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 254/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NAQVEAANYPFATIDPNVGVVEVPDYRLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + F DIAGLVKGAS+GEGLGNKFL +IRE D+I +VVRCF D D+ HV+G V
Sbjct: 60 PKKTVPTTFGFTDIAGLVKGASRGEGLGNKFLGNIRETDAICEVVRCFRDKDVTHVDGDV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+F+DLD +EKR+ ++ KK ++ D ++KL E A LEK++ L
Sbjct: 120 DPIRDIETINLELIFADLDTVEKRIGRIGKKAQSGDKEAKL----EVAILEKLKSTLEAN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + + E D +KQ LLTMKPIIYVAN+ E DL DP +NPH N+V+ A+ +
Sbjct: 176 KPARVIEFSKEEMDVVKQYTLLTMKPIIYVANLGEEDLEDPTTNPHYNKVVEFAAGEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A++E+EL + EE+ +L LG+ ESGL LI+ Y LLGLRTYFT+G +E +A
Sbjct: 236 VVPICAKIESELVGMDKEEKDLFLQDLGIEESGLDKLIKEAYKLLGLRTYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GMTAP+ AG+IHSDF++GFI+AET ++DD V GS A +E G +
Sbjct: 296 WTFKEGMTAPEMAGIIHSDFQRGFIKAETYSFDDLVEYGSEHALKEAGKI 345
>gi|403236790|ref|ZP_10915376.1| GTP-binding protein YchF [Bacillus sp. 10403023]
Length = 366
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+ +DL+ ++KR++++ K K KD ++ AE L ++++A +
Sbjct: 120 DPIADIETINLELILADLESVDKRIDRVAKLAKQKDKEAV----AEHEVLVQLKEAFENE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V + + +K + LLT KP++YVANV E D+ADP SN +V V A +
Sbjct: 176 QPARAVEFTEEQMKYVKGMHLLTSKPVLYVANVGEDDVADPSSNEYVQLVREFAQKDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIVELEGEEKEMFLEELGIEESGLDQLIRAAYHLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IH+DFE+GFIRAETV+Y+D +A GS+ ARE G V
Sbjct: 296 WTFRKGMKAPQCAGIIHTDFERGFIRAETVSYEDLLAGGSMNGAREAGKV 345
>gi|296330021|ref|ZP_06872505.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|296153060|gb|EFG93925.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. spizizenii ATCC 6633]
Length = 366
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF----EFEILSKLKEAFESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|408822211|ref|ZP_11207101.1| GTP-binding protein YchF [Pseudomonas geniculata N1]
Length = 363
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLGELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L+D E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+
Sbjct: 174 DGKAGRSVGLDDEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|456738075|gb|EMF62752.1| GTP-binding and nucleic acid-binding protein YchF [Stenotrophomonas
maltophilia EPM1]
Length = 363
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAGIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+
Sbjct: 174 DGKAGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +L LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLTDLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|268315605|ref|YP_003289324.1| GTP-binding protein YchF [Rhodothermus marinus DSM 4252]
gi|262333139|gb|ACY46936.1| GTP-binding protein YchF [Rhodothermus marinus DSM 4252]
Length = 366
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/347 (56%), Positives = 252/347 (72%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M LR GIVGLPNVGKSTLFNA+ G A++AN+PFCTIEPNVG+V VPD RL L+ L+
Sbjct: 1 MPLRCGIVGLPNVGKSTLFNALSRAG-AESANYPFCTIEPNVGVVPVPDERLERLAELAG 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K P ++EFVDIAGLV GAS+GEGLGN+FL+HIREVD+IL VVRCFED +IVHV+G V
Sbjct: 60 SAKVTPTTIEFVDIAGLVAGASKGEGLGNQFLAHIREVDAILHVVRCFEDPNIVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+++I EL+ DL+ +E+R+E+ + AK KL+E E A E+++ L G
Sbjct: 120 DPARDIEIIQTELLLKDLETVERRIERTARA-AKSGDKKLRE--ELAFYERLRDHLSSGA 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR T++D E ++ L LLT+KP++YVANVAESDL + NPHV V +A +
Sbjct: 177 PARLFTVSDLEAPWLRSLFLLTVKPVLYVANVAESDLPEGEGNPHVATVREIAEKEGAQV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I A++EA+L EL EER +L LG+ GL L+R+ Y LLGL T+FT G KE +AW
Sbjct: 237 VVICAELEAQLAELDEEERRAFLKELGLERPGLERLVRAAYELLGLITFFTVGPKEARAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G A QAAG+IHSDFE+GFIRAET++Y+D++ GS AAARE G
Sbjct: 297 TIRRGTRAQQAAGIIHSDFERGFIRAETISYEDYIRYGSEAAAREAG 343
>gi|89897783|ref|YP_521270.1| GTP-dependent nucleic acid-binding protein EngD [Desulfitobacterium
hafniense Y51]
gi|219670932|ref|YP_002461367.1| GTP-dependent nucleic acid-binding protein EngD [Desulfitobacterium
hafniense DCB-2]
gi|423075919|ref|ZP_17064633.1| GTP-binding protein YchF [Desulfitobacterium hafniense DP7]
gi|89337231|dbj|BAE86826.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541192|gb|ACL22931.1| GTP-binding protein YchF [Desulfitobacterium hafniense DCB-2]
gi|361853147|gb|EHL05333.1| GTP-binding protein YchF [Desulfitobacterium hafniense DP7]
Length = 366
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 267/350 (76%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL VL+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVQVPDARLQVLAEMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+++ VVRCFED+++VHV G V
Sbjct: 60 PDKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAVVHVVRCFEDSNVVHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DPK D+D+I LEL+ +D++ +EKR+E+ K K+ D ++++ E A L ++++ L G
Sbjct: 120 DPKRDIDIIQLELILADMESVEKRLERSAKLLKSGDKKAQV----EVALLNRLKETLDAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARS+ +D ER+ +K LL+MKP++Y ANV+E ++A P +NP+V +V +A+ S
Sbjct: 176 LAARSLEFSDEEREILKSFPLLSMKPVLYAANVSEEEIAQPDNNPYVRKVREIAAAENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A++EAE+ EL EE+ +L LG++ESGL LIR+ + LLGL TYFT+G+ E +A
Sbjct: 236 VVVVCAKIEAEIAELEEEEKKVFLEDLGLTESGLDRLIRAAFHLLGLMTYFTAGQIEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
W IR GM APQAAGVIH+DFE+GFIRAE VAY DFV G L A+EKGLV
Sbjct: 296 WEIRRGMKAPQAAGVIHTDFERGFIRAEVVAYKDFVENGGLNGAKEKGLV 345
>gi|47568674|ref|ZP_00239371.1| GTP-binding protein YchF [Bacillus cereus G9241]
gi|47554662|gb|EAL13016.1| GTP-binding protein YchF [Bacillus cereus G9241]
Length = 366
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+G+V
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGEV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|404329017|ref|ZP_10969465.1| GTP-binding protein YchF [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 366
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/378 (51%), Positives = 263/378 (69%), Gaps = 13/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GI+GLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ +
Sbjct: 1 MSLTTGIIGLPNVGKSTLFNAITQAG-AEMANYPFCTIEPNVGIVSVPDQRLDRLTDMYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP + EF DIAGLVKGAS+GEGLGN+FL++IREVD+I VVRCF+D +I HV+GK+
Sbjct: 60 PKRTVPTTFEFTDIAGLVKGASKGEGLGNQFLANIREVDAISHVVRCFDDKNITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+Q+ KR+++++K + KD QS + E +AL K+++A G
Sbjct: 120 DPVEDIETINLELILADLEQVNKRIDRIEKMARQKDKQSIV----EYSALSKLKEAFDQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V L E +IK L+ KP++YVANV+E D+A P N +V V A +
Sbjct: 176 KPARHVALTKEEEAAIKPFNFLSKKPVLYVANVSEDDIAAPEQNDYVQAVEKFAEKDGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ EL +EE+ +L LG+ SGL L+ Y LLGL TYFT+GEKE +A
Sbjct: 236 VVAISARIESEIAELEAEEKKAFLKDLGLKSSGLDRLVAKAYQLLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + G APQAAG+IHSDFE+GFIRAE ++Y D VA GS AAREKG H L
Sbjct: 296 WTFKQGTKAPQAAGIIHSDFERGFIRAEIISYQDLVADGSEIAAREKG-------HLRLE 348
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 349 GKDYIMQDGDIVNFRFNV 366
>gi|390934657|ref|YP_006392162.1| GTP-binding protein YchF [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570158|gb|AFK86563.1| GTP-binding protein YchF [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 363
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/347 (54%), Positives = 252/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDKRLNELAKIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCF+D++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFDDSNITHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++I LEL+ +DL+ +EKR+ K K D + E LE+I++ L DGKP
Sbjct: 120 IRDIEIITLELILADLEVVEKRIAKTSKYAKNDKTAAF----ELNVLERIKKTLDDGKPI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ +D E + QL LLT KP++Y AN++E DL N +V ++ A + +S +
Sbjct: 176 RTMDFDDEELSFVNQLMLLTSKPVMYAANISEDDLISKNENEYVKKLKEFAKNEKSDVIV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI
Sbjct: 236 ISAKIEEELSSLPDEEKYELLSEYGLEEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFEKGFIRAE ++Y D+V +G A+EKGL+
Sbjct: 296 KQGTKAPQAAGKIHSDFEKGFIRAEVISYKDYVESGGETPAKEKGLM 342
>gi|442804530|ref|YP_007372679.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442740380|gb|AGC68069.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 364
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/347 (54%), Positives = 262/347 (75%), Gaps = 4/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTI+PN+G+V VPD RL L+ + K +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIDPNIGVVNVPDERLDKLAEMYKPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED +IVHV+G + P
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDPNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+F+DL+ +E+RM+K+KK +AK + K +E+ E LE I+Q L +P
Sbjct: 120 VRDIETINLELIFADLEVLERRMDKVKK-QAKSGEKKYQEELE--FLESIKQHLESNQPV 176
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ +++ +QL LLT KP++Y AN++E D+ +P +NP+V E+ A+ ++ +T
Sbjct: 177 RTMKIDEEWEKYAEQLFLLTAKPMLYCANISEDDIKNPDANPYVRELKAYAAKEKAEVIT 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
I A++E E+ +L E+ +L+ LG+ ESGL LI+++Y LLGL ++ T+GE E +AWTI
Sbjct: 237 ICARIEEEIAQLDDSEKKAFLSELGIGESGLDRLIKASYKLLGLISFLTAGETEVRAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IHSDFE+GFIRAE VAY+D + AGS AA+E GLV
Sbjct: 297 KKGTKAPQAAGKIHSDFERGFIRAEVVAYEDLIKAGSYTAAKEMGLV 343
>gi|433655395|ref|YP_007299103.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293584|gb|AGB19406.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 363
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/347 (55%), Positives = 252/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDNRLYELAKIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNITHVEGNIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++I LELV +DL+ IEKR+ K K D + E LEKI+ L DGKP
Sbjct: 120 IRDIEIITLELVLADLEVIEKRIAKTSKYAKNDKSAAF----ELNILEKIKNTLDDGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ ++ E + QL LLT KP++Y AN++E DL N +V ++ A +S +
Sbjct: 176 RTMNFDEDELPFVNQLMLLTSKPVMYAANISEDDLISGKENDYVKKLKEYAEKEKSEVIV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI
Sbjct: 236 ISAKIEEELSSLPDEEKYELLSEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IH+DFEKGFIRAE ++Y+D++ AG +A+EKGL+
Sbjct: 296 KKGTKAPQAAGKIHTDFEKGFIRAEVISYNDYIEAGGETSAKEKGLM 342
>gi|196036125|ref|ZP_03103525.1| GTP-binding protein YchF [Bacillus cereus W]
gi|195991292|gb|EDX55260.1| GTP-binding protein YchF [Bacillus cereus W]
Length = 366
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ +P N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVINPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|298714678|emb|CBJ27603.1| PYchF, plastid YchF-like GTPase [Ectocarpus siliculosus]
Length = 415
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/395 (52%), Positives = 271/395 (68%), Gaps = 13/395 (3%)
Query: 13 ALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSA--SKISMSLRAGIVGLPNVGKS 70
A T+L + F + + GV + RR+ S S +M L+ GIVG+PNVGKS
Sbjct: 7 AGTVLLAGARTLAFRPPSTIWGVKVAGQAAMRRQVGSPVRSSSTMKLKTGIVGMPNVGKS 66
Query: 71 TLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130
TLFNAV E A AN+PF TIEPN+G+V VPD RL VL+ ++KS K VP++++F DIAG
Sbjct: 67 TLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLAEINKSVKTVPSTLDFYDIAG 126
Query: 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFS 190
LVKGAS+GEGLGN+FL++IRE D+I+ VVRCFED DI+HV G VDP D+D+IN+EL +
Sbjct: 127 LVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDPDIIHVEGSVDPVRDIDIINIELALA 186
Query: 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK 250
D+ Q+EKR++K+ K K + +EK L K+ + L +GKP R+V L + E
Sbjct: 187 DMAQVEKRLQKVAKDKKATA-------SEKTGLAKLLKVLEEGKPVRTVELTEEEAKDTA 239
Query: 251 QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPS 310
L LLT K +IY NVA+SDLAD N V+ V A + + V +SAQVE+EL +L
Sbjct: 240 YLGLLTAKKVIYACNVADSDLAD--GNAMVDGVRKFAEEEGARVVIVSAQVESELVDLDG 297
Query: 311 EERVEYLASLGVSE--SGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGV 368
E++ E+L SLGVSE GL L++ Y+ LGL+TYFTSGE ETKAWTI AG TAP+AAGV
Sbjct: 298 EDKQEFLESLGVSEETCGLRALVKEAYTALGLQTYFTSGETETKAWTIYAGWTAPKAAGV 357
Query: 369 IHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
IHSDFE+GFIRAE + Y+D V GS AA+EKGL+
Sbjct: 358 IHSDFERGFIRAEAIKYEDLVNCGSEKAAKEKGLL 392
>gi|194364507|ref|YP_002027117.1| GTP-dependent nucleic acid-binding protein EngD [Stenotrophomonas
maltophilia R551-3]
gi|194347311|gb|ACF50434.1| GTP-binding protein YchF [Stenotrophomonas maltophilia R551-3]
Length = 363
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+
Sbjct: 174 DGKSGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|305676745|ref|YP_003868417.1| GTPase with RNA binding site [Bacillus subtilis subsp. spizizenii
str. W23]
gi|305414989|gb|ADM40108.1| putative GTPase with RNA binding site [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 366
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + +F DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFQFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF----EFEILSKLKEAFESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 176 KPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +A
Sbjct: 236 VIVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKV 345
>gi|431795390|ref|YP_007222295.1| GTP-binding protein YchF [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785616|gb|AGA70899.1| GTP-binding protein YchF [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 366
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/352 (58%), Positives = 264/352 (75%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD R+ VL+G+ K
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVQVPDSRMQVLAGMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED+++VHV G V
Sbjct: 60 PDKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNVVHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DPK D+D I LELV +DL+ +EKR+E KL K K +Q E A L ++++ L
Sbjct: 120 DPKRDIDTIQLELVLADLESVEKRLERSAKLLKSGEKKAQ------LEVALLNRLKEVLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+ ARS+ +D E + +K LL+MKP++Y ANV+E D+A P N +V +V +A+
Sbjct: 174 EGQAARSLDFSDEELELLKSFPLLSMKPVLYAANVSEEDIAHPDDNAYVQKVREIAAFEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S V + A++EAE++EL EE+ +L LG+ +SGL LIR+ + LLGL TYFT+G+ E
Sbjct: 234 SEVVVVCAKIEAEISELEEEEKKAFLEDLGLVDSGLDRLIRAAFHLLGLMTYFTAGQIEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AW IR G APQAAGVIH+DFE+GFIRAE VAY DFV G L+ A+EKGLV
Sbjct: 294 RAWEIRQGTKAPQAAGVIHTDFERGFIRAEVVAYKDFVEHGGLSGAKEKGLV 345
>gi|152977674|ref|YP_001377191.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
cytotoxicus NVH 391-98]
gi|152026426|gb|ABS24196.1| GTP-binding protein YchF [Bacillus cytotoxicus NVH 391-98]
Length = 366
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 254/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVF----EHEILVRLKEAFEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ + + +K L LLT K ++YVANV+E D+ DP N +V V A+ S
Sbjct: 176 KPARTIEFTEEQMKVVKGLHLLTTKEMLYVANVSEEDIMDPSENQYVQRVKEFAAKENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G V
Sbjct: 296 WTFKKGMKAPQCAGVIHTDFERGFIRAETVSYTDLMEYGSMTAAKEAGKV 345
>gi|392940671|ref|ZP_10306315.1| LOW QUALITY PROTEIN: GTP-binding protein YchF [Thermoanaerobacter
siderophilus SR4]
gi|392292421|gb|EIW00865.1| LOW QUALITY PROTEIN: GTP-binding protein YchF [Thermoanaerobacter
siderophilus SR4]
Length = 362
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 254/351 (72%), Gaps = 14/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALE----KIQQALMD 232
DV++I LEL+ +D++ IE+R++K SKL + +KAA E + ++ L +
Sbjct: 120 IRDVEIITLELILADMEVIERRLQK---------TSKLARNDKKAAFEVEVLENKKGLDE 170
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP R++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A + S
Sbjct: 171 GKPVRALQFTEEEKSFVSQLMLLTYKPVMYVANISEEDLISGEENQYVKQLKEYAENENS 230
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ ISA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE
Sbjct: 231 QVLVISAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVH 290
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+
Sbjct: 291 AWTIKKGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLM 341
>gi|304317215|ref|YP_003852360.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778717|gb|ADL69276.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 363
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/347 (55%), Positives = 251/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDNRLYELAKIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNITHVEGNIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++I LELV +DL+ IEKR+ K K D + E LEKI+ L DGKP
Sbjct: 120 IRDIEIITLELVLADLEVIEKRIAKTSKYAKNDKSAAF----ELNILEKIKNTLDDGKPV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ ++ E + QL LLT KP++Y AN++E DL N +V ++ A +S +
Sbjct: 176 RTMNFDEDELPFVNQLMLLTSKPVMYAANISEDDLISGKENEYVKKLKEYAEKEKSEVIV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI
Sbjct: 236 ISAKIEEELSSLPDEEKYELLSEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IH+DFEKGFIRAE ++Y D++ +G AA+EKGL+
Sbjct: 296 KKGTKAPQAAGKIHTDFEKGFIRAEVISYKDYIESGGEVAAKEKGLM 342
>gi|344206158|ref|YP_004791299.1| GTP-binding protein YchF [Stenotrophomonas maltophilia JV3]
gi|343777520|gb|AEM50073.1| GTP-binding protein YchF [Stenotrophomonas maltophilia JV3]
Length = 363
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+
Sbjct: 174 DGKSGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|352518698|ref|YP_004888015.1| GTP-binding protein [Tetragenococcus halophilus NBRC 12172]
gi|348602805|dbj|BAK95851.1| GTP-binding protein [Tetragenococcus halophilus NBRC 12172]
Length = 366
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDWRLQRLTDLFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K PAS EF DIAG+VKGASQGEGLGN+FLSHIR+VD+I VVRCF+D++I HV+GK+
Sbjct: 60 PKKTTPASFEFTDIAGIVKGASQGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+ +DL+ + K+ +++K K KD + AE A L+KI+ L G
Sbjct: 120 DPLADIETINLELILADLESVNKQYNRVEKVAKTKDKAAM----AELAVLDKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K R++ ++ E+ +K L LLT KP++YVANVAE D+ DP SN +V +V N A+ +
Sbjct: 176 KSVRTIEFSEDEQAIVKGLFLLTAKPVLYVANVAEDDVQDPTSNQYVQKVQNFAATENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+T+ AQ+E E+ EL E++ E+L LG+ ESGL LIR++++LLGL TYFT+GE E +A
Sbjct: 236 VITVCAQIEEEIAELDDEDKAEFLEDLGIKESGLDQLIRASFNLLGLATYFTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT G+ APQAAG+IHSDFE+GFIRAETV++ D S+ AA+E G V
Sbjct: 296 WTFHKGIKAPQAAGIIHSDFERGFIRAETVSFADLDKYESMHAAKEAGRV 345
>gi|296134463|ref|YP_003641710.1| GTP-binding protein YchF [Thermincola potens JR]
gi|296033041|gb|ADG83809.1| GTP-binding protein YchF [Thermincola potens JR]
Length = 364
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/367 (53%), Positives = 256/367 (69%), Gaps = 6/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PFCTI+PNVG+V VPDPRL L+ + Q
Sbjct: 1 MQLGIVGLPNVGKSTLFNAITRAG-AEAANYPFCTIDPNVGVVEVPDPRLDKLAEMVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +FVDIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCF D+++ HV G V P
Sbjct: 60 RVVPTVTQFVDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFRDDNVTHVEGSVGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ IN+EL+ +D++ +E+R+++ +K K + K+ AE LE+I AL GKP
Sbjct: 120 TRDIETINMELILADMETLERRLDRSRK-LLKTNDKKVA--AEVELLERIHAALDAGKPI 176
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R + LN E IK LT KP++Y ANV E DL D NP+V EV +A+ S +
Sbjct: 177 RGLGLNPEEAAIIKDANFLTAKPVLYAANVGEEDLPDGKGNPYVEEVKRIAAAENSEVIV 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+ A++EAE+ EL +E+ E+LA LG+ ESGL LIR+ Y LLGL T+FT+G +E KAWTI
Sbjct: 237 VCAKIEAEIAELDDDEKAEFLADLGLEESGLDKLIRAGYRLLGLMTFFTAGPQEVKAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEHLAS 414
+ G APQAAG IHSD E+GFIRAE V+YDD +AAGS AAREKGLV Y
Sbjct: 297 KQGTKAPQAAGKIHSDIERGFIRAEVVSYDDLMAAGSQLAAREKGLVRLEGKDYVMQDGD 356
Query: 415 YKYFHWN 421
YF +N
Sbjct: 357 VVYFRFN 363
>gi|363897971|ref|ZP_09324508.1| GTP-binding protein YchF [Oribacterium sp. ACB7]
gi|361957616|gb|EHL10923.1| GTP-binding protein YchF [Oribacterium sp. ACB7]
Length = 364
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 255/348 (73%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGVVAVPDERLQLLSDLYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I+ VVRCF+D++++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLGNIRETDAIVHVVRCFDDDNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I LEL+FSDL+ +++RM K KK D +K E LEK+ L +GK A
Sbjct: 120 IRDIETIELELIFSDLEVLDRRMAKTKKLANNDKDAK----KEYTLLEKLHTHLEEGKLA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
+ + + + L LLT KP+IY NV E LAD G SNP+V +V A S
Sbjct: 176 INFEAEEEDAAFLDSLGLLTRKPVIYACNVGEESLADDGASNPYVQKVREYAKKNHSESF 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQ+E E++EL EE+ EYL SLG+SESGL ++R++YSLLGL +Y T+GEKET+AWT
Sbjct: 236 VISAQIEQEISELSDEEKGEYLESLGLSESGLDKIVRASYSLLGLMSYLTAGEKETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKGLV
Sbjct: 296 IKKGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDNGSLSAAREKGLV 343
>gi|345301915|ref|YP_004823817.1| GTP-binding protein YchF [Rhodothermus marinus SG0.5JP17-172]
gi|345111148|gb|AEN71980.1| GTP-binding protein YchF [Rhodothermus marinus SG0.5JP17-172]
Length = 366
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/347 (56%), Positives = 253/347 (72%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M LR GIVGLPNVGKSTLFNA+ G A++AN+PFCTIEPNVG+V VPD RL L+ L+
Sbjct: 1 MPLRCGIVGLPNVGKSTLFNALSRAG-AESANYPFCTIEPNVGVVPVPDERLERLAELAG 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + P ++EFVDIAGLV GAS+GEGLGN+FL+HIREVD+IL VVRCFED +IVHV+G V
Sbjct: 60 SARVTPTTIEFVDIAGLVAGASKGEGLGNQFLAHIREVDAILHVVRCFEDPNIVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+++I EL+ DL+ +E+R+E+ + AK KL+E E A E+++ L G
Sbjct: 120 DPARDIEIIQTELLLKDLETVERRIERTARA-AKSGDKKLRE--ELAFYERLRDHLSSGA 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR T++D E ++ L LLT+KP++YVANVAESDL + NPHV V +A+ +
Sbjct: 177 PARLFTVSDLEAPWLRSLFLLTVKPVLYVANVAESDLPEGEGNPHVATVREIAAKEGAQV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I A++EA+L EL EER +L LG+ GL L+R+ Y LLGL T+FT G KE +AW
Sbjct: 237 VVICAELEAQLAELDEEERRAFLKELGLERPGLERLVRAAYELLGLITFFTVGPKEARAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G A QAAG+IHSDFE+GFIRAET++Y+D++ GS AAARE G
Sbjct: 297 TIRRGTRAQQAAGLIHSDFERGFIRAETISYEDYIRYGSEAAAREAG 343
>gi|338810724|ref|ZP_08622964.1| GTP-binding protein YchF [Acetonema longum DSM 6540]
gi|337277305|gb|EGO65702.1| GTP-binding protein YchF [Acetonema longum DSM 6540]
Length = 364
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/368 (52%), Positives = 263/368 (71%), Gaps = 8/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+G+ K +
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDERLDKLAGMFKPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++ FVDIAGLVKGASQGEGLGNKFLSHIR+VD+I QVVRCF+D +I HV G +DP
Sbjct: 60 KVTPTAMRFVDIAGLVKGASQGEGLGNKFLSHIRQVDAIAQVVRCFQDENITHVEGGLDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D+++IN EL +D+D +EKR++K +K K+ D +++ AE L ++++ L D +P
Sbjct: 120 LRDIEIINTELCLADIDSVEKRLDKAQKQTKSGDKKAQ----AEVELLNRVRKMLEDAQP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
R V N+ E+ +K+L LLT KP+++VANV+E ++A P NP V V A+ ++G +
Sbjct: 176 VRRVEFNEEEQFILKELNLLTQKPVLFVANVSEEEIAGPDDNPLVQRVKQYAAREKAGVI 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
T+ A++E+E+ ELP +E +L LG++ESGL LI++ + LLGL T+ T+GE E +AWT
Sbjct: 236 TVCAKLESEIAELPDDEAKAFLTDLGLTESGLDKLIKAGFYLLGLMTFLTAGEPEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEHLA 413
I G APQAAG IHSD E+GFIRAE V+YDD + +GS AAA+EKGLV Y
Sbjct: 296 IVKGTKAPQAAGKIHSDIERGFIRAEIVSYDDLMRSGSQAAAKEKGLVRLEGKDYVMQDG 355
Query: 414 SYKYFHWN 421
YF +N
Sbjct: 356 DVVYFRFN 363
>gi|304440382|ref|ZP_07400271.1| GTP-binding protein YchF [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371134|gb|EFM24751.1| GTP-binding protein YchF [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 364
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 263/348 (75%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+VAVPD RL VLS ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTKAG-AEAANYPFATIEPNIGVVAVPDERLEVLSKINNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA++EF DIAGLVKGAS+GEGLGN+FL++IREVDSI+QVVRCFED++I+HV+G V+P
Sbjct: 60 RILPATIEFFDIAGLVKGASKGEGLGNQFLANIREVDSIVQVVRCFEDSNIIHVDGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDLD ++KR+ +++K D L E L+K ++ L GK A
Sbjct: 120 LRDIENINLELIFSDLDLVDKRLSRVEKQAKADKSLAL----EVEVLKKTKEVLEQGKAA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
RS+ L++ E +K LL+ KPIIYVANV+E D+AD G SN V+EV A+ S V
Sbjct: 176 RSLDLSEEESKILKSYQLLSSKPIIYVANVSEDDIADDGASNKMVSEVREYAAKEGSDVV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
IS ++E+++ L +E+ +L LG+ SGL LIR++YSLLGL +Y TSG ET+AWT
Sbjct: 236 VISCEIESQIQALDDDEKELFLEELGLKSSGLDKLIRASYSLLGLISYLTSGPMETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IH+DFE+GFIRAETV+YDD V +GS+ AA+E GLV
Sbjct: 296 IKKGTKAPQAAGKIHTDFERGFIRAETVSYDDLVKSGSMNAAKEHGLV 343
>gi|58583223|ref|YP_202239.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|84625059|ref|YP_452431.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|188575473|ref|YP_001912402.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|58427817|gb|AAW76854.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84368999|dbj|BAE70157.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188519925|gb|ACD57870.1| GTP-binding protein YchF [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 363
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 255/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+ K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLAGIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCF+++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFDNDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A
Sbjct: 174 DGKSGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 291 RAWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 340
>gi|167641728|ref|ZP_02399971.1| GTP-binding protein YchF [Bacillus anthracis str. A0193]
gi|177655282|ref|ZP_02936836.1| GTP-binding protein YchF [Bacillus anthracis str. A0174]
gi|254735150|ref|ZP_05192860.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Western North America USA6153]
gi|167510282|gb|EDR85685.1| GTP-binding protein YchF [Bacillus anthracis str. A0193]
gi|172080209|gb|EDT65301.1| GTP-binding protein YchF [Bacillus anthracis str. A0174]
Length = 366
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
D D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DSIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|386717195|ref|YP_006183521.1| GTP-binding and nucleic acid-binding protein YchF [Stenotrophomonas
maltophilia D457]
gi|384076757|emb|CCH11342.1| GTP-binding and nucleic acid-binding protein YchF [Stenotrophomonas
maltophilia D457]
Length = 363
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAGIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK RS L++ E+ ++ L LLT+KP++Y+ANV E +NPH+ V A+
Sbjct: 174 EGKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGF---DNNPHLEAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|325914242|ref|ZP_08176592.1| GTP-binding protein YchF [Xanthomonas vesicatoria ATCC 35937]
gi|325539497|gb|EGD11143.1| GTP-binding protein YchF [Xanthomonas vesicatoria ATCC 35937]
Length = 363
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 255/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+
Sbjct: 174 DGKSGRAAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAATEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 291 RAWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 340
>gi|433462014|ref|ZP_20419609.1| GTP-binding protein YchF [Halobacillus sp. BAB-2008]
gi|432189350|gb|ELK46464.1| GTP-binding protein YchF [Halobacillus sp. BAB-2008]
Length = 365
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/378 (51%), Positives = 273/378 (72%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A +AN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-ALSANYPFATIDPNVGIVEVPDERLDKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVR FED +I HV+G+V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRAFEDENITHVSGQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+ +DL+ + KR++++ K + KD + AE+A LE +++AL D
Sbjct: 120 DPITDIETINLELILADLETVTKRLDRVAKLARQKDKDAV----AEQAVLETLREALEDE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR+V ++ +K L LLT KPI+YVANV+E ++ + G N V ++ A+ +
Sbjct: 176 TPARAVEFGTDQQKIVKGLHLLTAKPILYVANVSEEEIGE-GDNDKVKQIREFAAKENAE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ E+L LG++ESGL LI++TY+LLGL TYFT+GE+E +A
Sbjct: 235 VIVVCAKIESEIAELDGDEKEEFLEDLGIAESGLDQLIKATYNLLGLATYFTAGEQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQAAG+IH+DFE+GFIRAETV+YDD + AGS+ AAR++G V L
Sbjct: 295 WTFKEGMTAPQAAGIIHTDFERGFIRAETVSYDDLMEAGSMGAARDRGRV-------RLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIVRDGDVIHFRFNV 365
>gi|254521390|ref|ZP_05133445.1| GTP-binding protein YchF [Stenotrophomonas sp. SKA14]
gi|219718981|gb|EED37506.1| GTP-binding protein YchF [Stenotrophomonas sp. SKA14]
Length = 363
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKEAAAR------KPVLAKLQAALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+
Sbjct: 174 DGKSGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|164686384|ref|ZP_02210414.1| hypothetical protein CLOBAR_02822 [Clostridium bartlettii DSM
16795]
gi|164601986|gb|EDQ95451.1| GTP-binding protein YchF [Clostridium bartlettii DSM 16795]
Length = 365
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/377 (53%), Positives = 269/377 (71%), Gaps = 14/377 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL+VL L+ ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNVGVVAVPDERLNVLKELNNAK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFED+++VHV+G VDP
Sbjct: 60 KIVPTAIEFCDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D INLEL+ SD++ +++R+ +K KA S L + E L I L + K
Sbjct: 120 IRDIDTINLELILSDIEILDRRI--VKTTKALKSDKSLAGELE--MLNAIAATLAESKSV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 295
R++ + E++ + L LLT KP+IY ANV+E DLAD G+ N +V V A+ + V
Sbjct: 176 RTMDFTEEEQEFVNSLNLLTSKPVIYAANVSEDDLADEGANNEYVARVREFAASENAEVV 235
Query: 296 TISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+EAE++EL S EE+ E+L +LG+ +SGL LI+S+YSLLGL ++ T+GE+E +AW
Sbjct: 236 VVCAQIEAEISELESDEEKKEFLETLGLEQSGLDKLIQSSYSLLGLMSFLTAGEQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
TI+ G APQAAG IHSD E+GFIRAE V YDD V GS+A AREKGLV L
Sbjct: 296 TIKVGTKAPQAAGKIHSDIERGFIRAEIVNYDDLVECGSVANAREKGLV-------RLEG 348
Query: 415 YKYFHWNSYMLRYFFSL 431
Y N ++ + F++
Sbjct: 349 KDYVMQNGDVVNFRFNV 365
>gi|301056949|ref|YP_003795160.1| GTP-binding protein YchF [Bacillus cereus biovar anthracis str. CI]
gi|300379118|gb|ADK08022.1| conserved GTP-binding protein YchF [Bacillus cereus biovar
anthracis str. CI]
Length = 366
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+ +D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSCEDLMTNGSMTAAKEAGKV 345
>gi|292671029|ref|ZP_06604455.1| GTP-dependent nucleic acid-binding protein EngD [Selenomonas noxia
ATCC 43541]
gi|292647346|gb|EFF65318.1| GTP-dependent nucleic acid-binding protein EngD [Selenomonas noxia
ATCC 43541]
Length = 368
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/350 (57%), Positives = 255/350 (72%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDGRLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+++I EL +DL+ IEKRM K+ K K+ ++K AE ALE+++ AL +GK
Sbjct: 122 PLRDIEIIETELCLADLEAIEKRMAKVTKLMKSGSKEAK----AEHMALERLKSALDEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG 293
PAR V L+ E+ +++ L LLT KPI+Y+ANV E + A N +V V A+ +
Sbjct: 178 PAREVELSIEEQATLRDLNLLTRKPILYIANVGEDEAATADAENLYVQTVKKYAARTGAE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VTISA++E E+ EL +EE +L LG +ESGL LI +SLLGL+T+ T+GE E +A
Sbjct: 238 VVTISARLEEEIAELDAEEATAFLEDLGFAESGLDRLIHGAFSLLGLQTFLTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGLV
Sbjct: 298 WTITRGTTAPRAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLV 347
>gi|317496036|ref|ZP_07954397.1| GTP-binding protein YchF [Gemella morbillorum M424]
gi|316913842|gb|EFV35327.1| GTP-binding protein YchF [Gemella morbillorum M424]
Length = 366
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL+ +DL+ +EKR+ ++ K+ K KD + AE L K++ L +
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEKQAKQKDKDAV----AEFGVLSKVRDILKEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + L+ E+ K L LLTMKP++YVANV+E DL D +N HV V A++ S
Sbjct: 176 KPARLLELDKEEQKIAKNLHLLTMKPMLYVANVSEDDLLDVDANKHVASVREFAANEGSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ L EE+ +L LG+ ESGL LI+++YSLLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEMASLEDEEKAMFLEELGIDESGLDKLIKASYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETV+YDD + GS+ A+E G V
Sbjct: 296 WTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLLEYGSMVKAKEAGRV 345
>gi|326203524|ref|ZP_08193388.1| GTP-binding protein YchF [Clostridium papyrosolvens DSM 2782]
gi|325986344|gb|EGD47176.1| GTP-binding protein YchF [Clostridium papyrosolvens DSM 2782]
Length = 364
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 264/367 (71%), Gaps = 6/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL +L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDMLAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVDSI+ VVRCFED++IVHV+G + P
Sbjct: 60 KITPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDSIVHVVRCFEDSNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
K D++ INLEL+FSDL+ IE+R+++ KK K K + E E ++ L GKP
Sbjct: 120 KRDIETINLELIFSDLEMIERRIDRTKK-MLKSGDKKFQ--VEMELYESLKAHLESGKPV 176
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS++ + ++ + QL L+T+KP++Y ANV+E DL+ SN + E+ +A++ S +
Sbjct: 177 RSMSFDQEQQQLVDQLFLITLKPVLYAANVSEEDLSSLDSNRFLAELKEVAAEENSEVMV 236
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
I A++E E+ +L EE+ ++L ++G+ ESGL LI+++Y +LGL +Y T+G +E +AWTI
Sbjct: 237 ICAKIEEEIAQLDDEEKADFLEAMGLEESGLDKLIKASYKILGLISYLTAGPQEVRAWTI 296
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEHLAS 414
G APQAAG IHSDFE+GFIRAE VAYDD +++G+ + A+EKGLV Y H
Sbjct: 297 TKGTKAPQAAGKIHSDFERGFIRAEIVAYDDLISSGTYSVAKEKGLVRSEGKEYVMHDGD 356
Query: 415 YKYFHWN 421
F +N
Sbjct: 357 VTLFRFN 363
>gi|375087217|ref|ZP_09733599.1| GTP-binding protein YchF [Megamonas funiformis YIT 11815]
gi|374562034|gb|EHR33369.1| GTP-binding protein YchF [Megamonas funiformis YIT 11815]
Length = 368
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 257/350 (73%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL + S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDERLKVLHEMYNS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFLSHIR+VD++ VVRCF DI HV G VD
Sbjct: 62 KKTTPASVSFVDIAGLVKGASRGEGLGNKFLSHIRQVDAVAHVVRCFASGDITHVEGSVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+++IN EL +DLD +EKR++++ + K+ + +++ AE+A LEK+++ + +
Sbjct: 122 PIRDIEIINTELCLADLDSVEKRLDRVSRTAKSGNKEAR----AEEAVLEKVKKVVEEAI 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG 293
PAR L++ E + IK L LLT+KP +YVANV+E + A N +V +V A +G
Sbjct: 178 PARQAKLSEDELELIKDLNLLTLKPTLYVANVSEDEAATAENDNEYVAKVKEYAQKENAG 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE+E+ EL EE E+L+ LG+ ESGL LI++ + LLGL T+ T+GE E +A
Sbjct: 238 VVVISAKVESEIAELDEEEANEFLSDLGLDESGLNKLIKAAFKLLGLMTFLTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI+ G APQAAG IHSD E+GFIRAE V+YDD VA+GS+AAAREKG V
Sbjct: 298 WTIKVGTKAPQAAGKIHSDIERGFIRAEIVSYDDLVASGSVAAAREKGQV 347
>gi|335044742|ref|ZP_08537765.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333758528|gb|EGL36085.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 364
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 255/348 (73%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGVVAVPDERLQLLSDLYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I+ VVRCF+D++++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLGNIRETDAIVHVVRCFDDDNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I LEL+FSDL+ +++RM K KK D +K E A LEK+ L +GK A
Sbjct: 120 IRDIETIELELIFSDLEVLDRRMAKTKKLANNDKDAK----KEYALLEKLHAHLEEGKLA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
+ + + + L LLT KP+IY NV E LAD G SN +V +V A S
Sbjct: 176 INFEAEEEDAAFLDSLGLLTRKPVIYACNVGEESLADDGASNQYVQKVREYAKKNHSESF 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISAQ+E E++EL EE+ EYL SLG+SESGL ++R++YSLLGL +Y T+GEKET+AWT
Sbjct: 236 VISAQIEQEISELSDEEKGEYLESLGLSESGLDKIVRASYSLLGLMSYLTAGEKETRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKGLV
Sbjct: 296 IKKGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDNGSLSAAREKGLV 343
>gi|373106709|ref|ZP_09521009.1| GTP-binding protein YchF [Stomatobaculum longum]
gi|371651648|gb|EHO17074.1| GTP-binding protein YchF [Stomatobaculum longum]
Length = 365
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 258/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G AQAAN+PFCTI+PNVG+VAVPD R+ L + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AQAANYPFCTIDPNVGVVAVPDARIKTLGEMHHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLV+GAS+GEGLGN+FL++IRE D+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KVTPAVIEFVDIAGLVRGASKGEGLGNQFLANIRECDAIVHVVRCFEDENVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+F+DL+ +E+R+ K +K D LK++ E L++++ L DGKPA
Sbjct: 120 VRDIETINLELIFADLEVLERRIAKTQKSANNDKS--LKKELE--ILKELKVLLEDGKPA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+ +D + + + LCLLT KP+IY ANV E DLAD G SNPHV V A+ QS
Sbjct: 176 SAFETDDADVAAFVASLCLLTAKPVIYAANVKEDDLADDGASNPHVTAVRAYAAAHQSKV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+SAQ+E E+ L E+ +YL +LG+S SGL LI ++Y LLGL ++ T+GE ET+AW
Sbjct: 236 FCVSAQIEEEIAALDESEKADYLEALGISVSGLDKLIAASYELLGLISFLTTGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFIRAE + YDDFV GS AAA+EKGL+
Sbjct: 296 TIKKGSKAPQAAGKIHTDFERGFIRAEVIGYDDFVRCGSSAAAKEKGLM 344
>gi|125973394|ref|YP_001037304.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
thermocellum ATCC 27405]
gi|256004371|ref|ZP_05429352.1| GTP-binding protein YchF [Clostridium thermocellum DSM 2360]
gi|281417596|ref|ZP_06248616.1| GTP-binding protein YchF [Clostridium thermocellum JW20]
gi|385778691|ref|YP_005687856.1| GTP-binding protein YchF [Clostridium thermocellum DSM 1313]
gi|419722955|ref|ZP_14250091.1| GTP-binding protein YchF [Clostridium thermocellum AD2]
gi|419724697|ref|ZP_14251756.1| GTP-binding protein YchF [Clostridium thermocellum YS]
gi|125713619|gb|ABN52111.1| GTP-binding protein YchF [Clostridium thermocellum ATCC 27405]
gi|255991655|gb|EEU01756.1| GTP-binding protein YchF [Clostridium thermocellum DSM 2360]
gi|281408998|gb|EFB39256.1| GTP-binding protein YchF [Clostridium thermocellum JW20]
gi|316940371|gb|ADU74405.1| GTP-binding protein YchF [Clostridium thermocellum DSM 1313]
gi|380771916|gb|EIC05777.1| GTP-binding protein YchF [Clostridium thermocellum YS]
gi|380781012|gb|EIC10674.1| GTP-binding protein YchF [Clostridium thermocellum AD2]
Length = 364
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 260/348 (74%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL+ L+ + K +
Sbjct: 1 MKMGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLNKLAEMYKPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++IVHV G VDP
Sbjct: 60 KVTPTTIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNIVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
DV+ I +EL+ +D++ +E+R+++ +K K+ D + +++ D E+I + +GKP
Sbjct: 120 VRDVETIEMELILADMEVLERRIDRTRKMLKSGDKKYQVELDI----YERIMKTFEEGKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
RS++ ++ E+ + QL LLT KP++Y ANV+E D+ NP V +++N A + S +
Sbjct: 176 VRSMSFSEEEKKIVDQLFLLTSKPVLYAANVSEDDINSDKPNPLVEKLVNYAKNEGSEVM 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E E+ +L EE+ E+L LG+SESGL LI+++Y LLGL ++ T+G +E +AWT
Sbjct: 236 VICAKIEEEIAQLDDEEKAEFLKELGLSESGLDRLIKASYRLLGLISFLTAGPQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G APQAAG IHSDFEKGFIRAE VAYDD + AGS A+EKGLV
Sbjct: 296 IVKGTKAPQAAGKIHSDFEKGFIRAEVVAYDDLIKAGSYTIAKEKGLV 343
>gi|329768073|ref|ZP_08259583.1| GTP-dependent nucleic acid-binding protein engD [Gemella
haemolysans M341]
gi|328838341|gb|EGF87951.1| GTP-dependent nucleic acid-binding protein engD [Gemella
haemolysans M341]
Length = 366
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 254/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL+ +DL+ +EKR+ ++ K+ K KD + AE A L K++ L +
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEKQAKQKDKDAV----AEFAVLSKVRDILKEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + + E+ K L LLTMKP++YVANV+E DL D +N HV V A+ S
Sbjct: 176 KPARLLEFDKEEQKIAKGLHLLTMKPMLYVANVSEDDLLDVDANKHVASVREFAASEGSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ L EE+ +L LG+ ESGL LI+++YSLLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEMASLEDEEKAMFLEELGIDESGLDKLIKASYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETV+YDD V GS+ A+E G V
Sbjct: 296 WTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLVEYGSMPKAKEAGRV 345
>gi|401680876|ref|ZP_10812786.1| GTP-binding protein YchF [Veillonella sp. ACP1]
gi|429759173|ref|ZP_19291677.1| GTP-binding protein YchF [Veillonella atypica KON]
gi|400218215|gb|EJO49100.1| GTP-binding protein YchF [Veillonella sp. ACP1]
gi|429180381|gb|EKY21602.1| GTP-binding protein YchF [Veillonella atypica KON]
Length = 384
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/385 (51%), Positives = 272/385 (70%), Gaps = 10/385 (2%)
Query: 41 TSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100
T + F+ +S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V
Sbjct: 5 TKNEINFNKGGTMSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVD 63
Query: 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR 160
VPD RL VL+ + S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+R
Sbjct: 64 VPDSRLAVLAEMFGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIR 123
Query: 161 CFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAE 219
CF+D +I HV G +DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE
Sbjct: 124 CFDDPNITHVAGSIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AE 179
Query: 220 KAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH 279
LE+I + L + KP R+ LN+ E + IK+L LLT KP +YVAN++E +++D +N H
Sbjct: 180 LPLLERIIEGLGEAKPVRAQGLNEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEH 239
Query: 280 VNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLG 339
V V A + +G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLG
Sbjct: 240 VKRVEEYAKNEGAGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLG 299
Query: 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
L YFT+GE E +AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+E
Sbjct: 300 LINYFTAGEMEARAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKE 359
Query: 400 KGLVSWLHYHEHL---ASYKYFHWN 421
KGLV L E++ +F +N
Sbjct: 360 KGLVR-LEGKEYVMKDGDVTHFRFN 383
>gi|241888611|ref|ZP_04775918.1| GTP-binding protein YchF [Gemella haemolysans ATCC 10379]
gi|241864634|gb|EER69009.1| GTP-binding protein YchF [Gemella haemolysans ATCC 10379]
Length = 366
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VP+ RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPEHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL+ +DL+ +EKR+ ++ K+ K KD + AE A L K++ L +
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEKQAKQKDKDAV----AEFAVLAKVRDILKEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + L+ E+ K L LLTMKP++YVANV+E DL D SN HV V A+ S
Sbjct: 176 KPARLLELDKEEQKIAKGLHLLTMKPMLYVANVSEDDLLDVDSNKHVASVREFAAGEGSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ L EE+ +L LG+ ESGL LI+++YSLLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEMASLEDEEKAMFLEELGIDESGLDKLIKASYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETV+YDD V GS+ A+E G V
Sbjct: 296 WTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLVEYGSMPKAKEAGRV 345
>gi|407796886|ref|ZP_11143837.1| GTP-binding protein YchF [Salimicrobium sp. MJ3]
gi|407018784|gb|EKE31505.1| GTP-binding protein YchF [Salimicrobium sp. MJ3]
Length = 365
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 261/350 (74%), Gaps = 7/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A +AN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AVSANYPFATIDPNVGIVEVPDARLQKLTALVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K P + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVR FED+++ HV+G+V
Sbjct: 60 PKKTTPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAICHVVRAFEDDEVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ I KR+++++K + KD ++ AEK L ++++AL
Sbjct: 120 DPISDIETINLELILADLETINKRLDRVEKMARQKDKEAL----AEKDVLTRLKEALESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR++ L+ E K L LLT KPI+YVANVAE ++ + N +V + A +
Sbjct: 176 QPARALELSKEEEKYRKGLHLLTAKPILYVANVAEDEIGE-AENENVKRIREFAKKEDAE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+TI A++E+E+ EL EER E+L LG++E+GL LI++TY+LLGL TYFT+GE+E +A
Sbjct: 235 VITICAKIESEIAELEGEERAEFLEDLGIAEAGLDQLIKATYNLLGLATYFTAGEEEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GMTAPQAAG+IH+DFEKGFI+AETV+Y+D + GS+A A+E G V
Sbjct: 295 WTFRKGMTAPQAAGIIHTDFEKGFIKAETVSYEDLIEGGSMAKAKENGKV 344
>gi|288554590|ref|YP_003426525.1| GTP-binding protein YchF [Bacillus pseudofirmus OF4]
gi|288545750|gb|ADC49633.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
pseudofirmus OF4]
Length = 366
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQTLTDLVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIRQVDAISHVVRCFADDNITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P +D+ VINLEL+ +D + +EKR+ ++ K K +D ++ AE LE ++ A +
Sbjct: 120 NPLNDIQVINLELILADFESVEKRIGRVAKLAKTRDKEAV----AELEVLELLRDAFEEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ + + +KQL LLT KP++YVANV+E DL P N +V +V A+ S
Sbjct: 176 KPARSIEFTEEQEKIVKQLHLLTSKPVLYVANVSEEDLLSPEDNDYVKQVKEFAAGENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIRAAYNLLGLETYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G APQAAG+IH+DFE+GFIRAE V+YDD V AGS+A A+E+G V
Sbjct: 296 WTYRKGTKAPQAAGIIHTDFERGFIRAEVVSYDDLVDAGSMAVAKERGKV 345
>gi|402300574|ref|ZP_10820062.1| GTP-binding protein YchF [Bacillus alcalophilus ATCC 27647]
gi|401724299|gb|EJS97674.1| GTP-binding protein YchF [Bacillus alcalophilus ATCC 27647]
Length = 366
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 254/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIRQVDAISHVVRCFSDDNITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VINLEL+ +DL+ IEKR+ ++ K K KD ++ AE LE +Q+ D
Sbjct: 120 NPIRDIEVINLELILADLESIEKRITRVGKLAKTKDKEAV----AELEVLEILQKTFEDE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ ++ ++ +KQL LLT KP++YVANV+E DL G N +V V A+ S
Sbjct: 176 KPARSIEFSEEQQKIVKQLHLLTSKPVLYVANVSEEDLLGDGDNDYVKLVKEFAAAENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDGEEKQMFLEELGIEESGLDQLIRAAYQLLGLETYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G APQAAG+IH+DFE+GFIRAE V+YDD + AGS+ A+E G V
Sbjct: 296 WTYRKGTKAPQAAGIIHTDFERGFIRAEIVSYDDLMEAGSMGQAKENGKV 345
>gi|449019775|dbj|BAM83177.1| GTP-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 441
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/421 (50%), Positives = 276/421 (65%), Gaps = 50/421 (11%)
Query: 32 LIGVLGITTTSSRRR-----------------FSSASKISMSLRAGIVGLPNVGKSTLFN 74
++G GI TT++ R +S+ + L+ GIVGLPNVGKSTLFN
Sbjct: 1 MLGFAGIVTTAAWARPVAVRQTQARYRSRPASLASSRSLRCKLQTGIVGLPNVGKSTLFN 60
Query: 75 AVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134
A+ E KA+AANFPFCTIEPN+G+V VPD RL VLS + S + VP +EFVDIAGLVKG
Sbjct: 61 ALCEQTKAEAANFPFCTIEPNIGVVTVPDSRLEVLSEIGGSSRIVPTYLEFVDIAGLVKG 120
Query: 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194
AS+GEGLGN+FLSHIRE D+I+ VVRCF D +VHV G V PK D++ I+ EL+ +DL
Sbjct: 121 ASRGEGLGNRFLSHIRECDAIVHVVRCFMDERVVHVAGHVHPKQDIETIDTELMLADLAM 180
Query: 195 IEKRMEKLKK--------GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDF-- 244
+EKR+E+L+K G + S+L ED E++ALE++ +AL G P R +L+D
Sbjct: 181 VEKRLERLRKPGSSRRSAGAGTMTSSQLAEDTERSALERVTKALDAGMPIRR-SLSDCTV 239
Query: 245 -ERDSIKQLCLLTMKPIIYVANVAESDLADPGSN-----------PH-------VNEVMN 285
ER ++++L LLT KP+IY ANVA+S LA P V EV
Sbjct: 240 DERQALRRLGLLTAKPVIYAANVADSVLAAATETLAKAKMQANVWPDNESPLALVREVFE 299
Query: 286 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSE---SGLGNLIRSTYSLLGLRT 342
A+ Q+ V +SAQ+E+EL ELP ER +YL SLG+++ GL L+R+ Y LGL T
Sbjct: 300 YAALEQAPVVAVSAQLESELVELPPLEREQYLESLGINDLQNIGLRALVRAAYETLGLCT 359
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
+FT G +ET+AWTI G APQAAGVIHSDFE+GFIRAETV++ D V AGSL +ARE+GL
Sbjct: 360 FFTCGPQETRAWTIPRGTKAPQAAGVIHSDFERGFIRAETVSFVDLVKAGSLTSAREQGL 419
Query: 403 V 403
V
Sbjct: 420 V 420
>gi|335429978|ref|ZP_08556873.1| GTP-binding protein YchF [Haloplasma contractile SSD-17B]
gi|334888394|gb|EGM26691.1| GTP-binding protein YchF [Haloplasma contractile SSD-17B]
Length = 366
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAGLV+GAS+GEGLGN+FLSHIR+VD+I QVVRCF D++I HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGLVRGASKGEGLGNQFLSHIRQVDAICQVVRCFVDDNITHVDGEV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++ IN EL+ +D+DQI+KR+++++K K KD Q AE L KI+ +
Sbjct: 120 EPIRDIETINFELILADMDQIDKRLKRIEKQVKMKDKQYI----AEFEVLAKIKVGFENE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PARS L+ E + +K + LLT+KP++YVANV+E ++A P NP+V V AS +
Sbjct: 176 VPARSQELSKDELEIVKHMQLLTLKPMLYVANVSEDEVATPDENPNVIRVKEFASQEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+T+ A++E+E+ EL E + +L LG++ESGL LIR+ Y LLGL TYFT+GEKE +A
Sbjct: 236 VITVCAKIESEIVELDEESKEMFLEDLGITESGLDKLIRAAYDLLGLETYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT GMTAPQ AG+IH+DF+KGFIRAETVAY D V GS AA+E G V
Sbjct: 296 WTFIKGMTAPQCAGIIHTDFQKGFIRAETVAYKDLVQYGSEQAAKEAGKV 345
>gi|376260950|ref|YP_005147670.1| GTP-binding protein YchF [Clostridium sp. BNL1100]
gi|373944944|gb|AEY65865.1| GTP-binding protein YchF [Clostridium sp. BNL1100]
Length = 364
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/368 (52%), Positives = 264/368 (71%), Gaps = 8/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL +L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDMLAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVDSI+ VVRCFED++IVHV+G + P
Sbjct: 60 KITPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDSIVHVVRCFEDSNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
K D++ INLEL+FSDL+ IE+R+++ KK K+ D + ++ E E I+ L G+P
Sbjct: 120 KRDIETINLELIFSDLEMIERRIDRTKKMLKSGDKKFQI----EMELYESIKAHLESGRP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
RS++ + ++ + QL L+T+KP++Y ANV+E DL+ SN + E+ +A + S +
Sbjct: 176 VRSMSFDQEQQQLVDQLFLITLKPVLYAANVSEEDLSSLDSNRFLAELKGVAVEENSEVM 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E E+ +L EE+ ++L ++G+ ESGL LI+++Y +LGL +Y T+G +E +AWT
Sbjct: 236 VICAKIEEEIAQLDDEEKADFLEAMGLEESGLDKLIKASYKILGLISYLTAGPQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEHLA 413
I G APQAAG IHSDFE+GFIRAE VAYDD ++ GS A+EKGLV Y H
Sbjct: 296 ITNGTKAPQAAGKIHSDFERGFIRAEIVAYDDLISCGSYTVAKEKGLVRSEGKEYVMHDG 355
Query: 414 SYKYFHWN 421
F +N
Sbjct: 356 DVTLFRFN 363
>gi|193215391|ref|YP_001996590.1| GTP-dependent nucleic acid-binding protein EngD [Chloroherpeton
thalassium ATCC 35110]
gi|193088868|gb|ACF14143.1| GTP-binding protein YchF [Chloroherpeton thalassium ATCC 35110]
Length = 363
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 254/369 (68%), Gaps = 9/369 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ + A N+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAQ-QVDAQNYPFCTIEPNVGTVAVPDPRLKPLSQITK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCFED++I HV+G +
Sbjct: 60 TKTIIPATLELVDIAGLVRGASKGEGLGNQFLSHIREVDAIIHVVRCFEDSNITHVDGDI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
PK D+D I EL+ +DLD +EKR+EKLKK D + A EK+ + L DGK
Sbjct: 120 SPKRDIDTIETELMLADLDSLEKRLEKLKKNARADKSLQ----PNVALCEKLIECLGDGK 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+V D E++ +K L++ KP++Y NV+E D+ + N EV +A+ +
Sbjct: 176 PARTVVETDEEKEILKSFFLISAKPVLYAVNVSEDDMGE--GNQWTKEVEEVAAKEGAKV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTI A VE+E+ +LP EER E+L SLG+ SGL LI++ Y LLGL TYFT+GEKE AW
Sbjct: 234 VTICASVESEIAQLPEEERPEFLESLGLEMSGLDRLIQAGYDLLGLHTYFTAGEKEVHAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG--LVSWLHYHEHL 412
T+R G AP+AAGVIHSDFEKGFIRAE + Y+D GS +E G +V Y
Sbjct: 294 TVRKGAKAPEAAGVIHSDFEKGFIRAEVIKYEDMAKFGSEQKVKEAGKLMVEGKEYVVCD 353
Query: 413 ASYKYFHWN 421
+F +N
Sbjct: 354 GDIMHFRFN 362
>gi|311032238|ref|ZP_07710328.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp.
m3-13]
Length = 366
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVDVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PKKTVPTHFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P +D++ INLEL+ +DL+ ++KR+E++ K K KD ++ E L +++AL +
Sbjct: 120 NPINDIETINLELILADLESVDKRLERVAKLAKQKDKEAVY----EHEVLVLVKEALENE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR+V + D + +K + LLT KP++YVANV E D+AD N +V +V A +
Sbjct: 176 LPARTVEVTDEQVKYLKGMHLLTSKPVLYVANVGEDDVADTSDNEYVQQVREFAEKDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+T+ A++E+E+ EL ++E+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +A
Sbjct: 236 VITVCAKIESEIVELDADEKAMFLEELGIKESGLDQLIRAAYNLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R+GM APQ AGVIH+DFE+GFIRAETV+Y+D +AAGS AA+E G V
Sbjct: 296 WTFRSGMKAPQCAGVIHTDFERGFIRAETVSYEDLLAAGSHTAAKEAGKV 345
>gi|285017305|ref|YP_003375016.1| GTP-binding protein [Xanthomonas albilineans GPE PC73]
gi|283472523|emb|CBA15028.1| putative gtp-binding protein [Xanthomonas albilineans GPE PC73]
Length = 363
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 250/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGALAAIIH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I++EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPVSDIETIDIELALADLDSVEKALNRAERAAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGKP RS L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+
Sbjct: 174 DGKPGRSAGLDEEEKTLVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRARAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +L LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AQVVPVSAAIEEELSQLDDADRDAFLVDLGLQEPGLNRVIRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A ARE G
Sbjct: 291 RAWTVKVGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAREAG 340
>gi|257871371|ref|ZP_05651024.1| translation-associated GTPase [Enterococcus gallinarum EG2]
gi|257805535|gb|EEV34357.1| translation-associated GTPase [Enterococcus gallinarum EG2]
Length = 366
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLADIDTINLELVLADLESINKRYARVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARS+ + E+ ++ L LLT KP++YVANVAE D+A+ NP+V V A +
Sbjct: 176 LSARSIEFTEEEQKIVRGLFLLTTKPVLYVANVAEDDVANAEENPYVKSVKEFAESEHAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVISARAEEEIAELDDEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G+ APQAAG+IH+DFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFRKGIKAPQAAGIIHTDFERGFIRAETVSFEDLDKYGNMHAAKEAGRV 345
>gi|422343627|ref|ZP_16424554.1| GTP-binding protein YchF [Selenomonas noxia F0398]
gi|355378043|gb|EHG25234.1| GTP-binding protein YchF [Selenomonas noxia F0398]
Length = 368
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/350 (57%), Positives = 256/350 (73%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDGRLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+++I EL +DL+ IEKRM K+ K K+ ++K AE ALE+++ AL +GK
Sbjct: 122 PLRDIEIIETELCLADLEAIEKRMAKVTKLMKSGSKEAK----AEHMALERLKSALDEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
AR V L+ E+ +++ L LLT KPI+Y+ANVAE + A + N +V V A+ +
Sbjct: 178 SAREVELSIEEQATLRDLNLLTRKPILYIANVAEDEAATADTENLYVQTVKKYAARTGAE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VTISA++E E+ EL +EE +L LG +ESGL LI +SLLGL+T+ T+GE E +A
Sbjct: 238 VVTISARLEEEIAELDAEEVTAFLEDLGFAESGLDRLIHGAFSLLGLQTFLTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGLV
Sbjct: 298 WTITRGTTAPRAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLV 347
>gi|289667605|ref|ZP_06488680.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. musacearum NCPPB 4381]
Length = 363
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALTEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 291 RAWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 340
>gi|303228726|ref|ZP_07315546.1| GTP-binding protein YchF [Veillonella atypica ACS-134-V-Col7a]
gi|302516600|gb|EFL58522.1| GTP-binding protein YchF [Veillonella atypica ACS-134-V-Col7a]
Length = 384
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/385 (51%), Positives = 272/385 (70%), Gaps = 10/385 (2%)
Query: 41 TSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100
T + F+ +S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V
Sbjct: 5 TKNEINFNKGGTMSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVD 63
Query: 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR 160
VPD RL VL+ + S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+R
Sbjct: 64 VPDSRLAVLAEMFGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIR 123
Query: 161 CFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAE 219
CF+D +I HV G +DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE
Sbjct: 124 CFDDPNITHVAGSIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AE 179
Query: 220 KAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH 279
LE+I + L + KP R+ L++ E + IK+L LLT KP +YVAN++E +++D +N H
Sbjct: 180 LPLLERIIEGLGEAKPVRAQGLDEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEH 239
Query: 280 VNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLG 339
V V A + +G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLG
Sbjct: 240 VKRVEEYAKNEGAGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLG 299
Query: 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
L YFT+GE E +AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+E
Sbjct: 300 LINYFTAGEMEARAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKE 359
Query: 400 KGLVSWLHYHEHL---ASYKYFHWN 421
KGLV L E++ +F +N
Sbjct: 360 KGLVR-LEGKEYVMKDGDVTHFRFN 383
>gi|329769232|ref|ZP_08260651.1| GTP-dependent nucleic acid-binding protein engD [Gemella sanguinis
M325]
gi|328839363|gb|EGF88943.1| GTP-dependent nucleic acid-binding protein engD [Gemella sanguinis
M325]
Length = 366
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 254/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VINLEL+ +DL+ +EKR+ ++ K+ K KD + AE L K++ L +
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEKQAKQKDKDAV----AEFGVLSKVRDILKEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + L+ E+ K L LLTMKP++YVANV+E DL D +N HV V A+ S
Sbjct: 176 KPARLLELDKEEQKIAKGLHLLTMKPMLYVANVSEDDLLDVDANKHVASVREFAASEGSK 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ L EE+ +L LG+ ESGL LI+++Y+LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEMAALEDEEKAMFLEELGIDESGLDKLIKASYNLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAETV+YDD V GS+ A+E G V
Sbjct: 296 WTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLVEYGSMPKAKEAGRV 345
>gi|345859425|ref|ZP_08811775.1| GTPase family protein [Desulfosporosinus sp. OT]
gi|344327572|gb|EGW39000.1| GTPase family protein [Desulfosporosinus sp. OT]
Length = 366
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQVG-AEAANYPFCTIDPNVGMVEVPDSRLQKLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V A+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++++HV G V
Sbjct: 60 PKKIVSATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDDNVIHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+PK D++ I+LELV +D++ +EKR ++ K KA D +++ E A LE++++ G
Sbjct: 120 NPKRDIETIDLELVLADMESVEKRADRTSKLLKAGDKKAQ----GEVALLERLKEVFNRG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARS+T D ER+ +K LLT+KP++YVANV+E+ L+ NP+V +VM +A++ +
Sbjct: 176 KGARSLTYTDEEREILKGFSLLTLKPVLYVANVSEAGLSTAADNPYVQQVMAIAAEEDAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + AQ+EAE+ EL +E+ +L LG+ ESGL LIR + LLGL T+FT+G+ E +A
Sbjct: 236 VVVVCAQIEAEIAELEEDEKEVFLQDLGLEESGLDRLIRVAFHLLGLMTFFTAGQVEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WTIR G APQAAGVIH+DFE GFIRAE VAY DFV L AREKGLV Y H
Sbjct: 296 WTIRQGTKAPQAAGVIHTDFEHGFIRAEVVAYKDFVEHNGLNGAREKGLVRLEGKEYMMH 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIVHFRFN 365
>gi|251799805|ref|YP_003014536.1| GTP-binding protein YchF [Paenibacillus sp. JDR-2]
gi|247547431|gb|ACT04450.1| GTP-binding protein YchF [Paenibacillus sp. JDR-2]
Length = 370
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 261/348 (75%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AG+VGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 5 MALKAGVVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDYRLDKLTELVQ 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HVNGKV
Sbjct: 64 PNKTVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVNGKV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ INLEL+ +D++ +EK++E+ +K K D + L E LE++++AL +
Sbjct: 124 DPLGDIQTINLELILADIESVEKKIERSRKNLKGGDKKIAL----EVEVLERVKEALYND 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PARSV L+D E+ I+ L LLTMKP++Y ANVAES++AD +N V V A+ +
Sbjct: 180 QPARSVELSDDEKLVIRDLHLLTMKPVLYAANVAESEVADTDNNKFVQVVREFAAAEGAQ 239
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE E+ EL E++ +L LG+ ESGL LI + Y LLGL TYFT+G +E +A
Sbjct: 240 VVPISAKVEEEIAELEGEDKAMFLEELGLQESGLNRLINAAYKLLGLYTYFTAGVQEVRA 299
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR GM APQAAGVIH+DFE+GFIRAE V+++D AAG++ A+E+G
Sbjct: 300 WTIRKGMKAPQAAGVIHTDFERGFIRAEVVSFEDLAAAGTMNVAKERG 347
>gi|427392913|ref|ZP_18886816.1| GTP-binding protein YchF [Alloiococcus otitis ATCC 51267]
gi|425730999|gb|EKU93827.1| GTP-binding protein YchF [Alloiococcus otitis ATCC 51267]
Length = 366
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 255/348 (73%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPDPRL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDPRLDRLTDLVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I VVRCF+D+++ HV+GKV
Sbjct: 60 PEKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAICHVVRCFDDSNVTHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+F+D + I+KR EK +K +AKD + A A L+KI+ AL DG
Sbjct: 120 DPASDIETINLELIFADQESIDKRYEKTRKQARAKDPDAV----ATLAVLDKIKPALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ ++ E +K L LLT KP++Y+ANVAE D++DP ++ ++ V +A +
Sbjct: 176 IPVRALDFDEEEEKIVKSLFLLTSKPVLYIANVAEEDVSDPEASDYLQTVKEIADQEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA +E E+ L +ER +L LG+ E GL +IR +Y+LL L TYFT+G KE +A
Sbjct: 236 VVGISAAIEEEIAALDDDERDLFLEDLGIQEPGLNRVIRRSYNLLNLGTYFTAGPKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + GM APQ AG+IHSDFE+GFIRAET++Y DF GS AARE G
Sbjct: 296 WTFKKGMKAPQVAGIIHSDFERGFIRAETISYADFDDLGSEKAAREAG 343
>gi|440732736|ref|ZP_20912541.1| GTP-binding protein YchF [Xanthomonas translucens DAR61454]
gi|440367506|gb|ELQ04567.1| GTP-binding protein YchF [Xanthomonas translucens DAR61454]
Length = 363
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGELARIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD+D I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIDTIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQTALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RS L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+
Sbjct: 174 DGKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRARAATEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG++E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDTFLADLGLAEPGLNRVIRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+AY DF+ A ARE G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYADFIKYKGEAGAREAG 340
>gi|380510763|ref|ZP_09854170.1| GTP-binding protein YchF [Xanthomonas sacchari NCPPB 4393]
Length = 363
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNALAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPVSDIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK R+ L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+
Sbjct: 174 EGKAGRNAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+SE GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDAFLADLGLSEPGLNRVIRAGYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAG 340
>gi|78046539|ref|YP_362714.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|346723863|ref|YP_004850532.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
axonopodis pv. citrumelo F1]
gi|78034969|emb|CAJ22614.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|346648610|gb|AEO41234.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 363
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 174 DGKAGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAVEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 340
>gi|332980994|ref|YP_004462435.1| GTP-binding protein YchF [Mahella australiensis 50-1 BON]
gi|332698672|gb|AEE95613.1| GTP-binding protein YchF [Mahella australiensis 50-1 BON]
Length = 364
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 260/348 (74%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPN+G+V VPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEVANYPFCTIEPNMGVVPVPDERLDKLAEIFHPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEF DIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFE+ D+VHV G VDP
Sbjct: 60 KVTPAVVEFFDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFENPDVVHVEGTVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ IN+EL+ +D++ +E+RME+ K + D Q++ + D LE+I+ L +G+P
Sbjct: 120 IRDIETINIELILADIEVLERRMERTHKAARGGDKQAQWELDI----LERIKHVLDEGQP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
A+ L+ E++ +QL LLT KP++YVAN+ E + P SNP+V +VM+ A + S +
Sbjct: 176 AKMCQLDGDEQEFARQLQLLTYKPVLYVANIDEDSITQPESNPYVKKVMDYAKNEGSEVI 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+ A++E E+ +L +EE+ ++ +G+ +SGL LI+++Y LLGL ++ T+G KE +AWT
Sbjct: 236 PLCAKLEEEIVQLDNEEKKLFMEEMGLKQSGLERLIKASYELLGLMSFLTAGPKEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAGVIHSDFE+GFIRAE V+Y+D +A GSLAAAREKGL+
Sbjct: 296 IKRGTKAPQAAGVIHSDFERGFIRAEIVSYEDMLACGSLAAAREKGLM 343
>gi|325928011|ref|ZP_08189229.1| GTP-binding protein YchF [Xanthomonas perforans 91-118]
gi|325541625|gb|EGD13149.1| GTP-binding protein YchF [Xanthomonas perforans 91-118]
Length = 383
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 21 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 79
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 80 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 139
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 140 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 193
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 194 DGKAGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAVEG 250
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 251 AEVVPVSAAIEEELSQLDDADRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 310
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 311 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 360
>gi|289663464|ref|ZP_06485045.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. vasculorum NCPPB 702]
Length = 363
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALIEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 291 RAWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 340
>gi|320352448|ref|YP_004193787.1| GTP-binding protein YchF [Desulfobulbus propionicus DSM 2032]
gi|320120950|gb|ADW16496.1| GTP-binding protein YchF [Desulfobulbus propionicus DSM 2032]
Length = 365
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 255/350 (72%), Gaps = 7/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ A N+PFCTIEPNVGIV VPD RL L+ L K
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAA-AIAAENYPFCTIEPNVGIVPVPDARLDQLAELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ V +EFVDIAGLVKGASQGEGLGN+FL HIR+VD+IL VVRCFED++IVHV+G +
Sbjct: 60 TRNKVATQMEFVDIAGLVKGASQGEGLGNQFLGHIRQVDAILHVVRCFEDDNIVHVDGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP DV+VI EL+ +DL+ +EKR+ K + +AK +L AE A LE++Q L GK
Sbjct: 120 DPLRDVEVITTELILADLETVEKRLAK-SRNQAKSGDKRLL--AEAAFLERLQATLDQGK 176
Query: 235 PARSV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR+V ND +RD ++ LCLLT KP++YVANV E DLA N HV ++ +A++ +
Sbjct: 177 PARTVFPDNDQQRDLVRDLCLLTTKPVLYVANVDEGDLAT--GNRHVEQLGKVAAEEGAS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I+ +E EL+ L EE+ E+LA +G+ E GL LI++ Y+LLGL T+FT GEKETKA
Sbjct: 235 MVMIAGAIEQELSLLDREEQREFLAEMGMEEPGLHRLIKAGYALLGLITFFTVGEKETKA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI+ G AP AAG IHSDFE+GFIRAE +AYDD++A GS AR+KGL+
Sbjct: 295 WTIKKGTKAPGAAGKIHSDFERGFIRAEVIAYDDYIACGSETVARDKGLM 344
>gi|326692155|ref|ZP_08229160.1| GTP-binding protein YchF [Leuconostoc argentinum KCTC 3773]
Length = 366
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 252/348 (72%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQELVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDDIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D+D IN EL+ +DL+ +EKR K+ + K +D +K AE A LEKI+ L G
Sbjct: 120 NPLDDIDTINTELILADLETVEKRYAKVARAAKGQDKDAK----AEFAVLEKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K RS+T ND E+ +K L LLT KP++YVAN+AE D+ADP S+ + NE+ A+ +
Sbjct: 176 KSVRSITFNDDEQKIVKGLFLLTTKPVLYVANLAEDDMADPESSKYFNEIKAFAASEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEEIAQLADEDKAEFLEMAGVTEPGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT +AGM APQ AGVIHSDFE+GFIRAET+A+DD A GS+ A +E G
Sbjct: 296 WTFKAGMKAPQTAGVIHSDFERGFIRAETIAFDDLDALGSVKAVKEAG 343
>gi|299820864|ref|ZP_07052753.1| GTP-binding protein YchF [Listeria grayi DSM 20601]
gi|299817885|gb|EFI85120.1| GTP-binding protein YchF [Listeria grayi DSM 20601]
Length = 366
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 253/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDNRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ INLEL+ +DL+ +EKR +++K K KD ++ + E L K+++A ++
Sbjct: 120 DPIDDITTINLELILADLESVEKRFSRVEKLAKQKDKEAVI----EFNVLTKLKEAFLND 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR+V N+ E ++ L LLT KP++YVANV+E +++DP +N +V V A+ S
Sbjct: 176 LPARTVEFNEEEEKVVRNLFLLTRKPVLYVANVSEEEVSDPDNNKYVQAVREFAAKENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A+ E E+ EL +++ E+L +LG+ ESGL LIRS YSLLGL TYFT+G +E +A
Sbjct: 236 VIVVCARAEEEIAELEDDDKAEFLEALGIEESGLDKLIRSAYSLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT GM APQ AG+IH+DFE+GFIRAE VAYD V GS AA+E G V
Sbjct: 296 WTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALVEYGSEHAAKEAGKV 345
>gi|118579184|ref|YP_900434.1| GTP-dependent nucleic acid-binding protein EngD [Pelobacter
propionicus DSM 2379]
gi|118501894|gb|ABK98376.1| GTP-binding protein YchF [Pelobacter propionicus DSM 2379]
Length = 364
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 255/349 (73%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPDPR+ LS +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDPRMDQLSAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ P ++EFVDIAGLVKGAS GEGLGN+FL HIR VD+I+ VVRCF+D+++VHVNG+V
Sbjct: 60 PQRIQPTTIEFVDIAGLVKGASAGEGLGNQFLGHIRSVDAIIHVVRCFDDDNVVHVNGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P +D+D I+ EL SDL+ +EK++++ +K + KLK++A A ++++ L GK
Sbjct: 120 SPAADIDTIHTELGLSDLETVEKKLQRAEKA-GRSGDRKLKDEA--AFYQRVRDLLDQGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V N+ ER ++ L LLT KP++YVANVAE DL G +P V +V +AS +G
Sbjct: 177 NVRGVAENEDERLWLRDLHLLTDKPVLYVANVAEDDLG--GEHPFVGQVQQIASLEGAGV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTI ++EAE++EL EE+ +L +G++E+GL LIRS Y LLGL TYFT+G KE +AW
Sbjct: 235 VTICGKLEAEISELEGEEKQAFLNDMGLAEAGLDRLIRSGYELLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAGVIHSDFEKGFIRAE +A+DDF+A A A+EKGL+
Sbjct: 295 TITRGTKAPQAAGVIHSDFEKGFIRAEVIAFDDFIACNGEAGAKEKGLM 343
>gi|406982184|gb|EKE03538.1| hypothetical protein ACD_20C00191G0015 [uncultured bacterium]
Length = 365
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/356 (53%), Positives = 253/356 (71%), Gaps = 5/356 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ A++AN+PFCTIEPNVG+V VPD RL +L ++K+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALTSTKNAESANYPFCTIEPNVGVVTVPDERLWILKDIAKTN 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P ++EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I+ VVRCFED + +HV GK+DP
Sbjct: 62 VVIPTAIEFVDIAGLVKGASKGEGLGNQFLGHIREVDAIIHVVRCFEDENTIHVAGKIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
+D++ IN+EL +DL+ +EKR +++ K ++ + ED + ++K+ + L +GKP
Sbjct: 122 ANDIETINMELALADLNTVEKRKDRIAKQVKSREKNAIIED---SVVDKLMELLSEGKPF 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
+ E+ + L LL+ KP+IY ANV+E+DL G+N V +V + V
Sbjct: 179 PMDLFTEEEKPFVNNLHLLSCKPVIYAANVSEADLV-KGTNKFVEQVKEYTKTHLAEVVV 237
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQ+E+EL EL EE E+L LGV SG+ +I++ Y LLGLRTYFT GEKE +AWTI
Sbjct: 238 ISAQIESELAELSPEEASEFLKDLGVDNSGINKMIKAVYHLLGLRTYFTVGEKEVRAWTI 297
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL 412
GM APQAAGVIH+DFEKGFIRAE Y+DFV AGS A+E+G V+ L E++
Sbjct: 298 TTGMKAPQAAGVIHTDFEKGFIRAEITGYNDFVNAGSDKMAKERG-VTRLEGKEYI 352
>gi|291541647|emb|CBL14757.1| GTP-binding protein YchF [Ruminococcus bromii L2-63]
Length = 364
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 259/348 (74%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G AQ+AN+PFCTIEPN+G+VAVPD RL L+ +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITDAG-AQSANYPFCTIEPNIGVVAVPDKRLDKLAEMYDPD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PAS+EFVDIAGLVKGAS+GEGLGNKFLS+IRE D+I+ VVRCFE++DI+HV G ++P
Sbjct: 60 KYTPASIEFVDIAGLVKGASKGEGLGNKFLSNIRECDAIVHVVRCFENDDIIHVEGNINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+ SD++ +E+R++K KK D K ++D + E++ AL +GKPA
Sbjct: 120 ARDIETINLELILSDVEMLERRIDKTKKMLKGD--KKYQKDID--LFERVLAALNEGKPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 295
RSV +D E+ + ++ LLT KP+IY AN+++ D ++ SN V +A++ +G +
Sbjct: 176 RSVECDDDEKAILSEVALLTNKPVIYAANMSDEDFSNGIDSNEGYKAVQKIAAEEHAGVL 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I AQ+E E+ E+ EE+ +LA +G+ ESGL LI+ Y+LLGL +Y T+G++E +AWT
Sbjct: 236 PICAQIEEEIVEMDKEEKEMFLADMGLEESGLDRLIKECYALLGLISYLTAGKQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IHSDFE+GFIRAE +AYDD +A GS+ AA+EKGLV
Sbjct: 296 IKKGTKAPQAAGKIHSDFERGFIRAEVIAYDDLIACGSMTAAKEKGLV 343
>gi|384418020|ref|YP_005627380.1| GTP-binding protein YchF [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353460934|gb|AEQ95213.1| GTP-binding protein YchF [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 363
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCF+++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFDNDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+ AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLHAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A
Sbjct: 174 DGKSGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G
Sbjct: 291 RAWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAG 340
>gi|339624058|ref|ZP_08659847.1| GTP-binding protein YchF [Fructobacillus fructosus KCTC 3544]
Length = 366
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 249/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVGIV VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGIVEVPDKRLARIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+QK VP + EF DIAG+VKGAS+GEGLGNKFL +IR+V++I+ VVR F+D++I+HVNGKV
Sbjct: 60 AQKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVNAIVHVVRAFDDDEIIHVNGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ IN ELV +DL+ +EKR K+ + K D +K AE A LEKI+ L +G
Sbjct: 120 DPLDDIATINTELVLADLEAVEKRYAKVARAAKGSDKTAK----AEAAVLEKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K RS+ N+ E+ +K L LLT KP +YVAN+AE D+ADP ++P+ ++ A S
Sbjct: 176 KAVRSIDFNEEEQAIVKGLFLLTSKPTLYVANIAEDDMADPENSPYYKQIKEFADSENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ +L +E+ +YL GVSE GL LIRS Y LL LRT+FT+GEKET+A
Sbjct: 236 VIALSANAEEEIAQLDDDEKADYLELAGVSEPGLDKLIRSAYHLLDLRTFFTAGEKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT +AG APQAAGVIHSDFE+GFIRAET ++DD GS A +E G
Sbjct: 296 WTFKAGAKAPQAAGVIHSDFERGFIRAETFSFDDLDKYGSEKAVKEAG 343
>gi|313893984|ref|ZP_07827550.1| GTP-binding protein YchF [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441548|gb|EFR59974.1| GTP-binding protein YchF [Veillonella sp. oral taxon 158 str.
F0412]
Length = 368
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 267/373 (71%), Gaps = 10/373 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCFED +I HV G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFEDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AELPLLERIIEGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R+ LN+ E + IK+L LLT KP ++VANV+E ++AD +N HV V A
Sbjct: 176 EAKPVRAQGLNEDELEMIKELTLLTAKPSLFVANVSEDEVADYSANEHVKRVEEYAKAEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E
Sbjct: 236 AGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV L E+
Sbjct: 296 RAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVR-LEGKEY 354
Query: 412 L---ASYKYFHWN 421
+ +F +N
Sbjct: 355 VMKDGDVTHFRFN 367
>gi|319938348|ref|ZP_08012743.1| translation-associated GTPase [Coprobacillus sp. 29_1]
gi|319806436|gb|EFW03100.1| translation-associated GTPase [Coprobacillus sp. 29_1]
Length = 366
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 255/370 (68%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI+PNVG+V VPD RL L+ + K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NAQVEAANYPFATIDPNVGVVEVPDHRLEELTKICK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAGLVKGAS+GEGLGNKFL++IRE D+I +VVRCF D DI HV+G V
Sbjct: 60 PKKTVPTTFEFTDIAGLVKGASRGEGLGNKFLANIRETDAICEVVRCFRDKDITHVDGDV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP DV+ INLEL+F+DL+ +EKR+ K+ KK K+ D +SK AE L ++ L G
Sbjct: 120 DPIRDVETINLELIFADLETVEKRIGKIEKKAKSGDKESK----AELDILVPLKDILEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR++ + E D +KQ LLTMKP+IYVAN+ E DL +P +NP+ E+ + AS
Sbjct: 176 KPARTMEYSKDEMDIVKQFTLLTMKPLIYVANLGEEDLENPDANPYYVELKDYASKEGCD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A++E+EL L EE+ +L LG+ ESGL LI+ Y+LLGL T+FT G E +A
Sbjct: 236 VVPICAKIESELVGLDKEEKDMFLQDLGIDESGLDKLIKEAYALLGLNTFFTVGVDEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WT + GM AP+ AGVIH+DF+KGFI+AET AYDD + GS A RE G + Y
Sbjct: 296 WTFKQGMLAPEMAGVIHTDFQKGFIKAETYAYDDLIKYGSEQALREAGKIRQEGKQYVGK 355
Query: 412 LASYKYFHWN 421
+F +N
Sbjct: 356 DGDIMFFKFN 365
>gi|397905147|ref|ZP_10506018.1| GTP-binding and nucleic acid-binding protein YchF [Caloramator
australicus RC3]
gi|397161796|emb|CCJ33352.1| GTP-binding and nucleic acid-binding protein YchF [Caloramator
australicus RC3]
Length = 365
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 255/348 (73%), Gaps = 5/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVG+VAVPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AECANYPFCTIEPNVGVVAVPDERLEKLAEMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCFED++IVHV G +DP
Sbjct: 60 KVTPAVIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLELVFSD++ +E+RM+K KK A+ K +++ + +EK+ L GKPA
Sbjct: 120 IRDIETINLELVFSDMEVLERRMDKTKKS-ARSGDKKAQDELQ--FMEKLYTHLESGKPA 176
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
R++ ++D E++ +KQ LLT KP++Y N++E DL N +V +V A + S V
Sbjct: 177 RTLEMSDDEQEMLKQYFLLTSKPVLYACNISEDDLISGNVENQYVQKVKEYAKNEGSEVV 236
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E E++ L EE++E+LAS G+ E GL LI+++Y LLGL ++ T+G KE +AWT
Sbjct: 237 VICAKLEEEISTLEGEEKMEFLASYGLEEPGLNKLIKASYKLLGLISFLTAGPKEVRAWT 296
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IHSD EKGFIRAE VAYDD + GS AAREKGL+
Sbjct: 297 IKEGTKAPQAAGKIHSDMEKGFIRAEVVAYDDLIKCGSEIAAREKGLI 344
>gi|442770850|gb|AGC71553.1| GTP-binding/nucleic acid-binding protein YchF [uncultured bacterium
A1Q1_fos_517]
Length = 370
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/352 (55%), Positives = 258/352 (73%), Gaps = 9/352 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ KA++AN+PFCTIEPNVGIV VPD RL ++ ++ +
Sbjct: 2 LRAGIVGLPNVGKSTLFNALTRTRKAESANYPFCTIEPNVGIVTVPDERLAPIAKVAGTP 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA++E VDIAGLVKGA+ GEGLGNKFL+HIR+VD+I+QVVRCFED++IVHV + P
Sbjct: 62 TLVPAAIELVDIAGLVKGAASGEGLGNKFLAHIRQVDAIVQVVRCFEDSNIVHVEAHLHP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALE---KIQQALMD 232
+D++ I EL+ +D++ + +++E+L++ K D+ +K KA +E ++ L
Sbjct: 122 IADIETIQTELMLADMESLARQVERLERVAKGGDTSAK----GAKAQIEIARRLLAHLEA 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQ 291
GKPA ++ + ER + LL+MKP +Y NVAE DLA +NP V EV +A+
Sbjct: 178 GKPALTLEMTADERAVAQPFFLLSMKPTLYACNVAEDDLATADTNPLVAEVRQWVATHHG 237
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ VT+SAQ+E+EL ELP EE EYLAS GV+ESG+G+LIRS Y LLGLRTYFT+GEKE
Sbjct: 238 AEAVTVSAQIESELAELPVEEATEYLASHGVAESGVGSLIRSIYHLLGLRTYFTAGEKEA 297
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI AG TAP+AA VIHSD +GFI+AET+A+D+FV G A ARE G V
Sbjct: 298 RAWTIHAGDTAPEAAAVIHSDLARGFIKAETIAWDEFVRVGGWARAREGGNV 349
>gi|379728110|ref|YP_005320295.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius DAT561]
gi|376319013|dbj|BAL62800.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius DAT561]
Length = 366
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 253/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TIEPNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIEPNVGIVEVPDDRLDQLTELFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+ EF DIAG+VKGASQGEGLGN+FLSHIR+VD+I VVRCF+D++I HV GKV
Sbjct: 60 PKKTVPATFEFTDIAGIVKGASQGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D+D INLEL+ +DL+ I KR ++ K K KD + AE A L+KI+ L G
Sbjct: 120 DPLADIDTINLELILADLETITKRYTRISKVAKTKDKDAL----AELAVLDKIKPTLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
R++ + E+ +K L LLT KPI+YVANV+E ++A+ +N +V +V N A+D +
Sbjct: 176 HSVRTIEFTEEEQQIVKGLFLLTTKPILYVANVSEEEIANADNNHYVQQVRNFAADENAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A+ E E+ EL E++ E+L +LG+ SGL LIR+ Y LLGL TYFT+GE E A
Sbjct: 236 VIVICAKAEEEIAELDDEDKAEFLDALGIKISGLDLLIRAAYDLLGLATYFTAGEPEVHA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV++ D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFQDLSEYGNMQAAKEAGKV 345
>gi|303230338|ref|ZP_07317099.1| GTP-binding protein YchF [Veillonella atypica ACS-049-V-Sch6]
gi|302514877|gb|EFL56858.1| GTP-binding protein YchF [Veillonella atypica ACS-049-V-Sch6]
Length = 385
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 260/352 (73%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 18 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 76
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV G
Sbjct: 77 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVEG 136
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L
Sbjct: 137 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AELPLLERIIEGLG 192
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R+ L++ E + IK+L LLT KP +YVAN++E +++D +N HV V A +
Sbjct: 193 EAKPVRAQGLDEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEHVKRVEEYAKNEG 252
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E
Sbjct: 253 AGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEA 312
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV
Sbjct: 313 RAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLV 364
>gi|404497694|ref|YP_006721800.1| GTP-binding protein YchF [Geobacter metallireducens GS-15]
gi|418067968|ref|ZP_12705294.1| GTP-binding protein YchF [Geobacter metallireducens RCH3]
gi|78195296|gb|ABB33063.1| GTP-dependent translational factor YchF, putative [Geobacter
metallireducens GS-15]
gi|373557862|gb|EHP84242.1| GTP-binding protein YchF [Geobacter metallireducens RCH3]
Length = 364
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/349 (55%), Positives = 257/349 (73%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDERLERLAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGASQGEGLGN+FL HIR VD+I+ VVRCF+D ++VHV+G V
Sbjct: 60 PERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFDDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++VI EL +DLD +EK+ ++++K +AK KLK+++E A +++ AL G
Sbjct: 120 DPIRDIEVIQTELALADLDSVEKKFQRVEK-QAKGGDRKLKDESEFYA--RVKGALEKGT 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R V + D ER ++ L LLT KP++YVANVAE DL G++P V +V +LA +
Sbjct: 177 PGRHVEVGDDERLWMRDLHLLTDKPVLYVANVAEDDL--EGAHPFVAKVRDLAESEGARV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I ++E+E+ EL +E+ +LA +G++ESGL LIR Y LLGL TYFT+G+KE +AW
Sbjct: 235 VVICGRIESEIAELDGDEKKVFLAEMGLAESGLDRLIRMGYDLLGLITYFTAGKKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI AG APQAAGVIHSDFEKGFIRAE +AY DFVAAG A+EKGL+
Sbjct: 295 TIPAGTKAPQAAGVIHSDFEKGFIRAEVIAYRDFVAAGGETGAKEKGLM 343
>gi|182414910|ref|YP_001819976.1| GTP-binding protein YchF [Opitutus terrae PB90-1]
gi|177842124|gb|ACB76376.1| GTP-binding protein YchF [Opitutus terrae PB90-1]
Length = 367
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/347 (57%), Positives = 253/347 (72%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPD RL LS +SK+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALTRSRKAEAANYPFCTIDPNVGVVTVPDDRLEPLSKISKTS 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA++EFVDIAGLV GAS+GEGLGN+FL++IREVD+++QVVRCFED D+VH G +DP
Sbjct: 62 VTVPAAIEFVDIAGLVAGASKGEGLGNQFLANIREVDAVVQVVRCFEDPDVVHTMGGIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++VI ELV +DLD + KR+EK KK + D + AE A LEK+Q L GK
Sbjct: 122 VRDIEVITTELVLADLDAVAKRIEKAQKKARGGDKEGI----AELALLEKLQPHLNAGKT 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQSGR 294
A + E +K LLT KP+++ NVAESDLA NP V +V + +A +
Sbjct: 178 ANLLPATPEETALMKLFQLLTAKPVLFACNVAESDLATAEQNPFVRKVADYVAHHHDAAY 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA++EAEL +LP +E +L LGV +SG+ +LIR+TY LLGL+TYFT+GEKE +AW
Sbjct: 238 VPISAKIEAELIDLPPDEAKAFLRDLGVEDSGVSSLIRATYDLLGLQTYFTAGEKEVRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI+ G APQAAGVIH+DFE+GFI+AE V+Y D GS+AAARE G
Sbjct: 298 TIKKGWKAPQAAGVIHTDFERGFIKAEIVSYADLARLGSVAAAREAG 344
>gi|339496804|ref|ZP_08657780.1| GTP-binding protein YchF [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 366
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 252/348 (72%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDERLASIQAIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKVIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++ IN EL+ +DL+ ++KR K+ + K D +K AE A LEK++ AL G
Sbjct: 120 NPLDDIETINTELILADLETVDKRYAKVARAAKGSDKAAK----AEFAVLEKLKPALEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ AR+V ND E+ +K L LLT KP++YVAN+AE D+ADP S+ + NE+ A+ +
Sbjct: 176 QSARTVAFNDDEQKIVKGLFLLTTKPVLYVANLAEEDMADPESSKYFNEIKTFANSEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ ELP +ER E+L GV E GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEEIAELPDDERAEFLEMAGVDEPGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT RAG APQAAGVIHSDFE+GFIRAET+++DD A GS+ A +E G
Sbjct: 296 WTFRAGAKAPQAAGVIHSDFERGFIRAETISFDDLDALGSVKAVKEAG 343
>gi|289449885|ref|YP_003475171.1| GTP-binding protein YchF [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184432|gb|ADC90857.1| GTP-binding protein YchF [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 364
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 255/350 (72%), Gaps = 10/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL L+ + K +
Sbjct: 1 MQLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVPVPDQRLDFLAEMYKPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +E VDIAGLV GAS+GEGLGNKFLSHIR+VD+I+ VVRCF+D +++HVNG D
Sbjct: 60 KYTPAVLELVDIAGLVAGASRGEGLGNKFLSHIRQVDAIIHVVRCFDDPNVIHVNGSADA 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
K D++ I+LEL+ +DL+ +E+R++K+KK G K Q++L+ L +I++AL G
Sbjct: 120 KRDIETISLELILADLEYLERRIDKVKKSMKGGDKKPQAQLE------VLLRIKEALDAG 173
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARSV L+D E++ I L LL+ KPI+YVANV+E DLA P N V +A Q+
Sbjct: 174 KSARSVELSDEEKEEITDLELLSAKPILYVANVSEDDLAAPEKNNQFLAVQQIARAEQAA 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E EL L EER +L LG+ ESGL +++S YSLL L +Y T+G KE +A
Sbjct: 234 CIAISAKIEEELASLDDEERAMFLQDLGIVESGLDQIVKSGYSLLNLISYLTAGPKEVRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G APQAAG IHSDFE+GFIRAE VAYDD A GS+AA +EKGLV
Sbjct: 294 WTIIRGTKAPQAAGKIHSDFERGFIRAEVVAYDDLHALGSMAACKEKGLV 343
>gi|332687253|ref|YP_004457027.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius ATCC 35311]
gi|332371262|dbj|BAK22218.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius ATCC 35311]
Length = 366
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 253/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TIEPNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIEPNVGIVEVPDDRLDQLTELFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+ EF DIAG+VKGASQGEGLGN+FLSHIR+VD+I VVRCF+D++I HV GKV
Sbjct: 60 PKKTVPATFEFTDIAGIVKGASQGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D+D INLEL+ +DL+ I KR ++ K K KD + AE A L+KI+ L G
Sbjct: 120 DPLADIDTINLELILADLETITKRYTRISKVAKTKDKDAL----AELAVLDKIKPTLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
R++ + E+ +K L LLT KPI+YVANV+E ++A+ +N +V +V N A+D +
Sbjct: 176 HSVRTIEFTEEEQQIVKGLFLLTTKPILYVANVSEEEIANADNNHYVQQVRNFAADENAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A+ E E+ EL E++ E+L +LG+ SGL LIR+ Y LLGL TYFT+GE E A
Sbjct: 236 VIVICAKSEEEIAELDDEDKAEFLDALGIKISGLDLLIRAAYDLLGLATYFTAGEPEVHA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV++ D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFQDLSEYGNMQAAKEAGKV 345
>gi|89094727|ref|ZP_01167662.1| GTP-binding protein [Neptuniibacter caesariensis]
gi|89080981|gb|EAR60218.1| GTP-binding protein [Oceanospirillum sp. MED92]
Length = 363
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ +NG A A NFPFCTIEPN G VA+PDPRL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKNGIA-AENFPFCTIEPNAGTVAMPDPRLDNLAAIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV K+
Sbjct: 60 PERVVPTAMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ INLEL +DLD EK R++KL KG K++ A+KA LE++ L
Sbjct: 120 DPLSDIETINLELALADLDSAEKQLQRIQKLAKGGDKEAV------AQKAMLERLIPYLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP R + LND E +K LLT+KP +Y+ANV E D NPH+++V LA+
Sbjct: 174 EGKPVRGMGLNDDEMKIVKGFHLLTVKPTMYIANVDEDGFED---NPHLDQVKELAASEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V + ++EAE++EL EER E+LA LG+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 231 AGVVVVCNKLEAEISELDDEERDEFLADLGMEEPGLDRVIRAGYELLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAAGVIH+DFEKGFIRAE V+YDDFV A++ G
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVSYDDFVEHNGENGAKDAG 340
>gi|358011963|ref|ZP_09143773.1| GTP-binding protein YchF [Acinetobacter sp. P8-3-8]
Length = 363
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/378 (52%), Positives = 261/378 (69%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALMDG 233
DP D+ IN EL +DL+ + K + +L AK ++S KE A KA LEKIQ L +G
Sbjct: 120 DPLDDIATINTELALADLETVAKAITRL----AKSAKSGDKEALATKAVLEKIQPLLDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 176 KPARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAI 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + Q+EAE++ L E+R E+L +LG+ E GL +IR+ YSLLGL+TYFT+G +E +A
Sbjct: 233 VVPLCNQIEAEISLLEDEDRAEFLEALGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A A+E G W L
Sbjct: 293 WTVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFVQYNGEAGAKEAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 346 GKTYVVQDGDVLHFRFNV 363
>gi|255659988|ref|ZP_05405397.1| GTP-binding protein YchF [Mitsuokella multacida DSM 20544]
gi|260847741|gb|EEX67748.1| GTP-binding protein YchF [Mitsuokella multacida DSM 20544]
Length = 368
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 258/350 (73%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AANFPFCTIEPNVG+VAVPDPRL VL L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANFPFCTIEPNVGVVAVPDPRLKVLHELYNS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCF D +I HV G +D
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFVDPNITHVEGGID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D+I EL +DL+ +EKR+ KL K K+ + ++K++++ L +I+ AL +G
Sbjct: 122 PLRDIDIIQTELCLADLEIVEKRIMKLAKIAKSGNKEAKVEDE----ILRRIKAALDEGT 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG 293
PAR V L++ + + IK++ LLT+KP +YV NVAE ++A NP+V +V A+ +
Sbjct: 178 PARQVDLSEDDLELIKEMNLLTLKPTLYVTNVAEDEVATAYDENPYVQQVKEYAAKEGAE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VE+E+ EL EE +L LG +ESGL LI++ + LLGL+T+ T+G E +A
Sbjct: 238 VVAISAKVESEIAELDEEEAKAFLEDLGETESGLDRLIKAAFDLLGLQTFLTAGPDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V Y+D +AAGS+AAAREKG V
Sbjct: 298 WTIVKGTTAPKAAGKIHTDFERGFIRAEIVNYNDLIAAGSVAAAREKGQV 347
>gi|407007205|gb|EKE22929.1| hypothetical protein ACD_6C00673G0002 [uncultured bacterium]
Length = 363
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/377 (51%), Positives = 256/377 (67%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P S+EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG++
Sbjct: 60 PQRVIPTSMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GK
Sbjct: 120 DPLDDIATINTELALADLDAVAKAITRLTKSAKGGDKEAL---ATKAVLEKIQPLLDEGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER ++ L+T+KP +Y+ANVAE NPH++ V LA++ +
Sbjct: 177 PARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFE---KNPHLDAVRKLAAEENAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE +AYDDFV A A+E G W L
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFVQYNGEAGAKEAG--KW-----RLEG 346
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 347 KTYIVQDGDVLHFRFNV 363
>gi|390991982|ref|ZP_10262231.1| GTP-dependent nucleic acid-binding protein engD [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|372553269|emb|CCF69206.1| GTP-dependent nucleic acid-binding protein engD [Xanthomonas
axonopodis pv. punicae str. LMG 859]
Length = 363
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAG 340
>gi|374296933|ref|YP_005047124.1| GTP-binding protein YchF [Clostridium clariflavum DSM 19732]
gi|359826427|gb|AEV69200.1| GTP-binding protein YchF [Clostridium clariflavum DSM 19732]
Length = 364
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 256/348 (73%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVGIVAVPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGIVAVPDERLDKLAEMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++IVHV+G + P
Sbjct: 60 KVTPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNIVHVSGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
DV+ I +EL+ +D++ ++KR++K KK K+ D + ++ E E+IQ+ L +GKP
Sbjct: 120 VRDVETIEMELILADIEVMDKRIDKTKKMLKSGDKKYQI----ELELYERIQKTLSEGKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
ARS+ + E+ + QL LLT KP++Y ANV E L DP +NP V E+ A S +
Sbjct: 176 ARSMKFDPEEQKMVDQLFLLTSKPVLYAANVDEDGLRDPSNNPLVQEITEHAKKEGSEVM 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E E+ +L +E+ E+L LG++ESGL L++++Y LLGL ++ T+G +E +AWT
Sbjct: 236 VICAKIEEEIAQLDDDEKAEFLKELGLTESGLDRLVKASYKLLGLISFLTAGPQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G APQAAG IHSDFE+GFIRAE V++DD +A GS AA+EKGLV
Sbjct: 296 IVKGTKAPQAAGKIHSDFERGFIRAEIVSFDDLMACGSYNAAKEKGLV 343
>gi|21241722|ref|NP_641304.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
axonopodis pv. citri str. 306]
gi|381171813|ref|ZP_09880953.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|418518295|ref|ZP_13084444.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|21107091|gb|AAM35840.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
gi|380687773|emb|CCG37440.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|410704372|gb|EKQ62856.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 363
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAG 340
>gi|56965865|ref|YP_177599.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus clausii
KSM-K16]
gi|56912111|dbj|BAD66639.1| GTP-binding protein [Bacillus clausii KSM-K16]
Length = 366
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 255/349 (73%), Gaps = 4/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDVRLEKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFADENITHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D++VINLEL+ +DL+ ++KR+ ++ K ++ + AE LE +++A + K
Sbjct: 120 NPLRDIEVINLELILADLESVDKRIGRVAKLAKAKDKAAV---AELPVLEALKEAFENEK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ +D + +KQL LLT KP++YVANVAE DL N +V +V A S
Sbjct: 177 PARSIDFDDDQLKIVKQLHLLTSKPVLYVANVAEDDLLAGEDNDYVKQVKAFAEAENSNV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + A++E+E+ EL +E+ +L LG+ ESGL LIR+ YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGDEKALFLEELGIQESGLDQLIRAAYSLLGLETYFTAGEQEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
T R G APQAAG+IH+DFE+GFIRAE VAYDD +AAG + AA+E+G V
Sbjct: 297 TYRRGTKAPQAAGIIHTDFERGFIRAEVVAYDDLIAAGGMVAAKERGKV 345
>gi|169351713|ref|ZP_02868651.1| hypothetical protein CLOSPI_02494 [Clostridium spiroforme DSM 1552]
gi|169291935|gb|EDS74068.1| GTP-binding protein YchF [Clostridium spiroforme DSM 1552]
Length = 366
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 251/350 (71%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NAQVEAANYPFATIDPNVGVVEVPDYRLEKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + F DIAGLVKGAS+GEGLGNKFL +IRE D+I +VVRCF D D+ HV+G V
Sbjct: 60 PKKTVPTTFGFTDIAGLVKGASRGEGLGNKFLGNIRETDAICEVVRCFRDKDVTHVDGDV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+F+DL+ +E+R+ +L KK ++ D +K+ E A LEK++ L
Sbjct: 120 DPIRDIETINLELIFADLETVERRIGRLGKKAQSGDKDAKV----ELAILEKLKATLEAN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + + E +KQ LLTMKPIIYVAN+ E DL DP SNPH +V+ A++ +
Sbjct: 176 KPARIIDFSKEEMAIVKQYTLLTMKPIIYVANLGEEDLEDPNSNPHYVKVVEFATNEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A++E+EL + E+ +L LG+ ESGL LI+ Y LLGLRTYFT+G +E +A
Sbjct: 236 VVPICAKIESELVGMDKAEKDMFLQELGIEESGLDKLIKEAYKLLGLRTYFTAGIQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GMTAP+ AG+IHSDF++GFI+AET ++DD V GS A +E G +
Sbjct: 296 WTFKEGMTAPEMAGIIHSDFQRGFIKAETYSFDDLVEYGSEHALKEAGKI 345
>gi|262372326|ref|ZP_06065605.1| translation-associated GTPase [Acinetobacter junii SH205]
gi|262312351|gb|EEY93436.1| translation-associated GTPase [Acinetobacter junii SH205]
Length = 367
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/380 (51%), Positives = 260/380 (68%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DLD + K R+ K KG KD+ A KAALEKIQ L
Sbjct: 124 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKDAI------ATKAALEKIQPLLD 177
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH++ V LA++
Sbjct: 178 EGKPARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEEN 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E
Sbjct: 235 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEV 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ A+E G W
Sbjct: 295 RAWTVKVGATAPQAAGVIHTDFEKGFIRAECISYDDFIQYNGENGAKEAG--KW-----R 347
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + +L + F++
Sbjct: 348 LEGKTYVVQDGDVLHFRFNV 367
>gi|402758805|ref|ZP_10861061.1| GTP-binding protein YchF [Acinetobacter sp. NCTC 7422]
Length = 363
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/377 (51%), Positives = 257/377 (68%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GK
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAL---ATKAVLEKIQPLLDEGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH+ V LA++ +
Sbjct: 177 PARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEENAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ + A+E G W L
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFIQYNGESGAKEAG--KW-----RLEG 346
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 347 KTYVVQDGDVLHFRFNV 363
>gi|342218570|ref|ZP_08711181.1| GTP-binding protein YchF [Megasphaera sp. UPII 135-E]
gi|341589631|gb|EGS32903.1| GTP-binding protein YchF [Megasphaera sp. UPII 135-E]
Length = 368
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/373 (51%), Positives = 264/373 (70%), Gaps = 10/373 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD R+ VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDERIDVLTNM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+K +PA + FVDIAGLV GA+ GEGLGNKFLSHIRE D+I +VVRCF+D +I HV G
Sbjct: 60 YHPKKTIPAVMRFVDIAGLVAGAASGEGLGNKFLSHIRETDAIAEVVRCFDDANITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
VDP D+D+IN EL +D++ ++R++++ K D Q+K AE + L + + L
Sbjct: 120 SVDPIRDIDIINTELCLADIEVAQRRLDRISKIATCGDKQAK----AEASVLTVVLKTLE 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ +L + + +K+L LLT KPIIY+ANVAE + A P NP+V ++ A+ Q
Sbjct: 176 EGKPARTASLTEDDWQWVKELNLLTAKPIIYIANVAEEEAAHPEDNPYVQRLIEFATHEQ 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAE+ EL EE +LA LG++ESGL +I+++Y+LLGL +FT+G E
Sbjct: 236 AQVVAVSAKIEAEIAELSPEEGTSFLAELGLTESGLDRVIKASYTLLGLINFFTAGADEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWTI G AP+AAG IH+D E+GFIRAE V+Y+D +A GS AA+EKGLV L ++
Sbjct: 296 RAWTIVNGTKAPKAAGKIHTDIERGFIRAEIVSYEDLIACGSEQAAKEKGLVR-LEGKDY 354
Query: 412 L---ASYKYFHWN 421
+ YF +N
Sbjct: 355 IMKDGDVTYFRFN 367
>gi|323487701|ref|ZP_08092959.1| GTP-dependent nucleic acid-binding protein EngD [Planococcus
donghaensis MPA1U2]
gi|323398435|gb|EGA91223.1| GTP-dependent nucleic acid-binding protein EngD [Planococcus
donghaensis MPA1U2]
Length = 366
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/352 (57%), Positives = 261/352 (74%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++VINLEL+ +D++ IEKR+ KL K K KD+ AE+ L K+++A
Sbjct: 120 DPISDIEVINLELILADMESIEKRITRAAKLIKQKDKDAV------AEEPVLMKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+ ARS+ + E K L LLT+KP++YVANV+E ++AD +N +V V + A+
Sbjct: 174 NGQLARSIEFTEDELKIAKGLNLLTIKPMLYVANVSEDEIADADNNEYVQTVRDFAAKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E E+ EL EE+ +L LG+ ESGL L++++YSLLGL TYFT+G +E
Sbjct: 234 ADVIVICAKIEEEMAELEDEEKEMFLEELGIKESGLDLLVKASYSLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT + GM APQ AGVIHSDFE+GFIRAETVAYDD V GS+AAA+E G V
Sbjct: 294 RAWTFKKGMKAPQCAGVIHSDFERGFIRAETVAYDDLVEIGSMAAAKEAGKV 345
>gi|456013141|gb|EMF46810.1| GTP-binding and nucleic acid-binding protein YchF [Planococcus
halocryophilus Or1]
Length = 366
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/352 (57%), Positives = 261/352 (74%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++VINLEL+ +D++ IEKR+ KL K K KD+ AE+ L K++ A
Sbjct: 120 DPISDIEVINLELILADMESIEKRIVRAAKLIKQKDKDAV------AEEPVLMKLRDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+ ARS+ + E K L LLT+KP++YVANV+E ++AD +N +V V + A+
Sbjct: 174 NGQLARSIDFTEDELKIAKGLNLLTIKPMLYVANVSEDEIADADNNEYVQTVRDFATKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E E+ EL EE+ +L LG+ ESGL L++++YSLLGL TYFT+G +E
Sbjct: 234 ADVIVICAKIEEEMAELEDEEKEMFLEELGIKESGLDLLVKASYSLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT + GM APQ AGVIHSDFE+GFIRAETVAYDD V GS+AAA+E G V
Sbjct: 294 RAWTFKKGMKAPQCAGVIHSDFERGFIRAETVAYDDLVEIGSMAAAKEAGKV 345
>gi|424795618|ref|ZP_18221444.1| GTP-binding protein [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422795383|gb|EKU24091.1| GTP-binding protein [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 363
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGELARIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD+D I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPISDIDTIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RS L++ E+ ++ L LLT+KP++Y+ANV E + N H++ V A+
Sbjct: 174 DGKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NLHLDAVRARAATEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG++E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDTFLADLGLAEPGLNRVIRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+AY DF+ A ARE G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYADFIKYKGEAGAREAG 340
>gi|325921465|ref|ZP_08183320.1| GTP-binding protein YchF [Xanthomonas gardneri ATCC 19865]
gi|325548012|gb|EGD19011.1| GTP-binding protein YchF [Xanthomonas gardneri ATCC 19865]
Length = 363
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPD RL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDLRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RSV L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A
Sbjct: 174 DGKAGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFE---NNPHLDAVRAHAVTEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG++E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDEDRDTFLADLGLAEPGLNRVIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAG 340
>gi|383755452|ref|YP_005434355.1| putative GTP-binding protein [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367504|dbj|BAL84332.1| putative GTP-binding protein [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 368
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 256/350 (73%), Gaps = 7/350 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AANFPFCTIEPNVG+VAVPD RL+VL + S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANFPFCTIEPNVGVVAVPDERLNVLHEMYDS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGA+ GEGLGNKFL HIR+VD++ VVRCF+D +I HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGAANGEGLGNKFLEHIRQVDAVAHVVRCFDDANITHVEGGVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D+I EL +DL+ +EKR+ +L K K+ + ++K++++ L +I+ +L +GK
Sbjct: 122 PLRDIDIIQTELCLADLEVVEKRIMRLAKIAKSGNKEAKVEDE----ILRRIKDSLDNGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG 293
PAR V L+ + + IK + LLT+KP +YV NVAE ++A NP+V +V A +
Sbjct: 178 PARQVELSADDLEMIKDINLLTLKPTLYVTNVAEDEVATAYDENPYVQKVKEFAKAENAE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA+VEAE+ EL +EE +L LG +ESGL LI++ + LLGL+T+ T+G E +A
Sbjct: 238 VVAISAKVEAEIAELDAEEAKAFLEDLGETESGLDRLIKAAFDLLGLQTFLTAGPDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP+AAG IH+DFE+GFIRAE V YDD VA GS+AAAREKG V
Sbjct: 298 WTITKGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVANGSVAAAREKGQV 347
>gi|284047524|ref|YP_003397863.1| GTP-binding protein YchF [Acidaminococcus fermentans DSM 20731]
gi|283951745|gb|ADB46548.1| GTP-binding protein YchF [Acidaminococcus fermentans DSM 20731]
Length = 369
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/378 (52%), Positives = 263/378 (69%), Gaps = 11/378 (2%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 3 STNLEMGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLKVLADMF 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S+K VPA ++FVDIAGLVKGAS+GEGLGNKFLSHIR+ D+I +VVRCFED +I HV G
Sbjct: 62 HSKKIVPAGMKFVDIAGLVKGASKGEGLGNKFLSHIRQTDAIAEVVRCFEDGNITHVEGS 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+DP DV++IN EL +DL+ +EK++ K +K K A A L++I AL +G
Sbjct: 122 IDPVRDVEIINTELCLADLESVEKQLVKAQK---LIKAGDKKAAARAALLQRISDALGEG 178
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R V + D E+ +K+L LLT KPI+YVANVAE + AD N +V + + A+ +
Sbjct: 179 IPVRRVEMTDDEKAGLKELDLLTSKPILYVANVAEEEAADWSGNAYVKTLEDYAAQENAQ 238
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA+VE E+ ELP +E EYL G++E+GL LI++ + LLGL+T+ T+GE E++A
Sbjct: 239 VIVISAKVEEEIAELPEDEAKEYLEMEGLTEAGLDRLIKAGFKLLGLQTFLTAGEMESRA 298
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WTI G TAPQAAG IH+DFEKGFIRAE V+YDD V GS AA+EKGLV L
Sbjct: 299 WTIVQGSTAPQAAGKIHTDFEKGFIRAEIVSYDDLVKCGSKQAAKEKGLV-------RLE 351
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 352 GKDYIMQDGDVVEFRFNV 369
>gi|418523111|ref|ZP_13089135.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410700267|gb|EKQ58829.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 363
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDVAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAG 340
>gi|348025290|ref|YP_004765094.1| GTP-binding protein YchF [Megasphaera elsdenii DSM 20460]
gi|341821343|emb|CCC72267.1| GTP-binding protein YchF [Megasphaera elsdenii DSM 20460]
Length = 368
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/372 (51%), Positives = 257/372 (69%), Gaps = 8/372 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD R+ VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDKRIQVLTDM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K +K +PA + FVDIAGLV GAS+GEGLGNKFLSHIRE D+I +VVRCFED++I HV+G
Sbjct: 60 YKPKKTIPAVMRFVDIAGLVAGASKGEGLGNKFLSHIRETDAIAEVVRCFEDSNITHVDG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D++ IN EL +DL+ +KR +++ K + D +K+ E A L+K+ L
Sbjct: 120 SIDPIRDIETINTELCLADLESAQKRADRIAKVAQCGDKDAKV----EYAVLKKVLACLE 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G PAR L E +K+L LLT+KPIIY+ANVAE + +P +NP+V V A+
Sbjct: 176 NGDPARKAGLTKDELPQVKELNLLTLKPIIYIANVAEDEAGNPDANPNVKRVEEYAAKEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAE+ ELP +E +L LG+ ESGL LI+++YSLLGL +FT+G E
Sbjct: 236 AQVVAVSAKIEAEIAELPDDEAEVFLEELGLPESGLDKLIKASYSLLGLINFFTAGSDEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYH 409
+AWTI G A +AAG IH+D E+GFIRAE V+YDD +A GS A+EKGLV Y
Sbjct: 296 RAWTIVNGTKAQKAAGKIHTDIERGFIRAEIVSYDDLIACGSEQTAKEKGLVRLEGKDYV 355
Query: 410 EHLASYKYFHWN 421
YF +N
Sbjct: 356 MQDGDVTYFRFN 367
>gi|342213709|ref|ZP_08706428.1| GTP-binding protein YchF [Veillonella sp. oral taxon 780 str.
F0422]
gi|341597297|gb|EGS39856.1| GTP-binding protein YchF [Veillonella sp. oral taxon 780 str.
F0422]
Length = 368
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 255/352 (72%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVAGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
VDP D+++IN EL +DL+ ++KR++++ K K+ D +++ E LEK+ AL
Sbjct: 120 SVDPVRDIEIINTELCLADLESVDKRLQRIAKLAKSGDKDARM----EAPILEKVSAALG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
D P R+ L D E + +K L LLT K +YVANV E +++D N V +V + A+
Sbjct: 176 DAIPVRAQGLTDDELEILKDLTLLTAKKSLYVANVGEDEVSDYSGNEFVKQVEDYAAKEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
SG V +SA++E+E+ EL EE +LA LG+ ESGL LI+++YSLLGL YFT+GE E
Sbjct: 236 SGVVVVSARIESEIAELSDEEATAFLADLGLEESGLTKLIKASYSLLGLINYFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV
Sbjct: 296 RAWTIVEGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLEACGSQNAAKEKGLV 347
>gi|294055134|ref|YP_003548792.1| GTP-binding protein YchF [Coraliomargarita akajimensis DSM 45221]
gi|293614467|gb|ADE54622.1| GTP-binding protein YchF [Coraliomargarita akajimensis DSM 45221]
Length = 367
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/372 (51%), Positives = 264/372 (70%), Gaps = 9/372 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ KA++AN+PFCTI+PNVG+V VPD RL L ++K+
Sbjct: 2 LQAGIVGLPNVGKSTLFNALTRTRKAESANYPFCTIDPNVGVVQVPDERLEPLREIAKTD 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLV+GAS+GEGLGNKFL++IREVD+I+ VVRCFED+DI+H G +DP
Sbjct: 62 KVIPAAIEFVDIAGLVEGASKGEGLGNKFLANIREVDAIVHVVRCFEDDDIIHNMGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++VIN EL+ +D+ IE + EK K KA+ + KE+ E ++++ L + KPA
Sbjct: 122 LRDIEVINTELILADISSIESQKEKAVK-KARGGDKEAKENVE--LIDRLIPHLNENKPA 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ-SGRV 295
++ + D ++ +K+LCLL+ K ++Y NVAESDL+D SNP V +V A + +G
Sbjct: 179 ITLEMTDDDKVVLKRLCLLSAKRVLYACNVAESDLSDTSSNPFVAKVETYAREHHGAGIC 238
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISA VEAEL + + E EYL SLG+++SG+ LIR+TY LLGL +YFT+G +E +AWT
Sbjct: 239 IISAAVEAELIDFDAAEAAEYLESLGITDSGVSLLIRATYQLLGLASYFTAGVQEVRAWT 298
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASY 415
+ GM APQ AGVIH+DFE GFI+AE V+Y+D V AGS A AR+ G Y Y
Sbjct: 299 FKLGMKAPQCAGVIHTDFESGFIKAEVVSYEDLVTAGSTAGARDAG-----KYRLEGKDY 353
Query: 416 KYFHWNSYMLRY 427
++ + + R+
Sbjct: 354 EFKDGDVALFRF 365
>gi|300813415|ref|ZP_07093764.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512473|gb|EFK39624.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 364
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 261/348 (75%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+V VPD RL VLS +SKS
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTQAG-AEAANYPFATIEPNIGVVNVPDERLKVLSDISKSG 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE+ +++HV+GKVDP
Sbjct: 60 RIVYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENVIHVDGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLELVFSDL+QI+KR+ +L+K +AK +S E ++K+ L +GKPA
Sbjct: 120 VRDIENINLELVFSDLEQIDKRLARLEK-QAKADKSLKPELELLLKVKKV---LEEGKPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
RS+ L D E IK LLT+KP+IYVANV+E D + G N V +V +A V
Sbjct: 176 RSLELTDEEEKIIKNFALLTLKPVIYVANVSEEDAHNNGQDNEMVKKVKEMADKSNDETV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
IS ++E+E++EL +E+ +L LG+ ESGL LI+S+Y LLGL ++ T+GE E++AWT
Sbjct: 236 VISCEIESEISELSEDEKQLFLKDLGLDESGLDKLIKSSYKLLGLISFLTTGEMESRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G AP AAG IH+D E+GFI+A+ ++Y+D V+ GS+AAAREKGL+
Sbjct: 296 IKKGTKAPGAAGKIHTDMERGFIKADIISYEDLVSQGSMAAAREKGLI 343
>gi|333907085|ref|YP_004480671.1| GTP-binding protein YchF [Marinomonas posidonica IVIA-Po-181]
gi|333477091|gb|AEF53752.1| GTP-binding protein YchF [Marinomonas posidonica IVIA-Po-181]
Length = 363
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 256/348 (73%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL LS + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLDALSEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K + ++EFVDIAGLV+GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV +V
Sbjct: 60 PEKVLATTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALMDG 233
+PK+D++VINLEL+F+DL+ IEK++ + AK+++S KE A KA LE ++Q L DG
Sbjct: 120 NPKADIEVINLELIFADLESIEKQILR----TAKNAKSGNKEAIAHKAFLESVKQHLEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP R + L+D + IKQL LLT KP +Y+ANVAE + NPH+N V +A++ +
Sbjct: 176 KPVRVMELSDDQAKEIKQLHLLTTKPTMYIANVAEDGFEN---NPHLNVVKEIAAEEGAM 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I Q+EAE++EL +EE ++L +G+ E GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPICNQLEAEISELDAEEMQDFLDEMGMEEPGLDRVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT++ G T PQAAGVIH+DFEKGFIRAE V YDDF+ + A+E G
Sbjct: 293 WTVKQGATGPQAAGVIHTDFEKGFIRAEVVGYDDFIQYKGESGAKEAG 340
>gi|282883227|ref|ZP_06291826.1| GTP-binding protein YchF [Peptoniphilus lacrimalis 315-B]
gi|281297039|gb|EFA89536.1| GTP-binding protein YchF [Peptoniphilus lacrimalis 315-B]
Length = 364
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 261/348 (75%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+V VPD RL VLS +SKS
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTQAG-AEAANYPFATIEPNIGVVNVPDERLKVLSDISKSG 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE+ +++HV+GKVDP
Sbjct: 60 RIVYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENVIHVDGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLELVFSDL+QI+KR+ +L+K +AK +S E ++K+ L +GKPA
Sbjct: 120 VRDIENINLELVFSDLEQIDKRLARLEK-QAKADKSLKPELELLLKVKKV---LEEGKPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
RS+ L D E IK LLT+KP+IYVANV+E D + G N V +V +A V
Sbjct: 176 RSLELTDEEEKIIKNFALLTLKPVIYVANVSEEDAHNNGQDNEMVKKVKEMAEKSNDETV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
IS ++E+E++EL +E+ +L LG+ ESGL LI+S+Y LLGL ++ T+GE E++AWT
Sbjct: 236 VISCEIESEISELSEDEKQLFLKDLGLDESGLDKLIKSSYKLLGLISFLTTGEMESRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G AP AAG IH+D E+GFI+A+ ++Y+D V+ GS+AAAREKGL+
Sbjct: 296 IKKGTKAPGAAGKIHTDMERGFIKADIISYEDLVSQGSMAAAREKGLI 343
>gi|29377737|ref|NP_816891.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
faecalis V583]
gi|227518148|ref|ZP_03948197.1| GTP-binding translation factor YchF [Enterococcus faecalis TX0104]
gi|227555646|ref|ZP_03985693.1| GTP-binding translation factor YchF [Enterococcus faecalis HH22]
gi|229547168|ref|ZP_04435893.1| GTP-binding translation factor YchF [Enterococcus faecalis TX1322]
gi|229550738|ref|ZP_04439463.1| GTP-binding translation factor YchF [Enterococcus faecalis ATCC
29200]
gi|255971513|ref|ZP_05422099.1| translation-associated GTPase [Enterococcus faecalis T1]
gi|255974463|ref|ZP_05425049.1| translation-associated GTPase [Enterococcus faecalis T2]
gi|256618564|ref|ZP_05475410.1| translation-associated GTPase [Enterococcus faecalis ATCC 4200]
gi|256761818|ref|ZP_05502398.1| translation-associated GTPase [Enterococcus faecalis T3]
gi|256854945|ref|ZP_05560306.1| translation-associated GTPase [Enterococcus faecalis T8]
gi|256957052|ref|ZP_05561223.1| translation-associated GTPase [Enterococcus faecalis DS5]
gi|256960916|ref|ZP_05565087.1| translation-associated GTPase [Enterococcus faecalis Merz96]
gi|257078729|ref|ZP_05573090.1| translation-associated GTPase [Enterococcus faecalis JH1]
gi|257081311|ref|ZP_05575672.1| translation-associated GTPase [Enterococcus faecalis E1Sol]
gi|257083969|ref|ZP_05578330.1| translation-associated GTPase [Enterococcus faecalis Fly1]
gi|257087799|ref|ZP_05582160.1| translation-associated GTPase [Enterococcus faecalis D6]
gi|257088444|ref|ZP_05582805.1| translation-associated GTPase [Enterococcus faecalis CH188]
gi|257417386|ref|ZP_05594380.1| translation-associated GTPase [Enterococcus faecalis ARO1/DG]
gi|257418877|ref|ZP_05595871.1| translation-associated GTPase [Enterococcus faecalis T11]
gi|257421308|ref|ZP_05598298.1| translation-associated GTPase [Enterococcus faecalis X98]
gi|293384811|ref|ZP_06630656.1| GTP-binding protein YchF [Enterococcus faecalis R712]
gi|293388233|ref|ZP_06632752.1| GTP-binding protein YchF [Enterococcus faecalis S613]
gi|294781212|ref|ZP_06746559.1| GTP-binding protein YchF [Enterococcus faecalis PC1.1]
gi|300861458|ref|ZP_07107542.1| GTP-binding protein YchF [Enterococcus faecalis TUSoD Ef11]
gi|307268875|ref|ZP_07550240.1| GTP-binding protein YchF [Enterococcus faecalis TX4248]
gi|307277349|ref|ZP_07558447.1| GTP-binding protein YchF [Enterococcus faecalis TX2134]
gi|307283999|ref|ZP_07564169.1| GTP-binding protein YchF [Enterococcus faecalis TX0860]
gi|307286505|ref|ZP_07566604.1| GTP-binding protein YchF [Enterococcus faecalis TX0109]
gi|307289978|ref|ZP_07569904.1| GTP-binding protein YchF [Enterococcus faecalis TX0411]
gi|312901338|ref|ZP_07760619.1| GTP-binding protein YchF [Enterococcus faecalis TX0470]
gi|312902985|ref|ZP_07762174.1| GTP-binding protein YchF [Enterococcus faecalis TX0635]
gi|312908853|ref|ZP_07767792.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 512]
gi|312952971|ref|ZP_07771827.1| GTP-binding protein YchF [Enterococcus faecalis TX0102]
gi|312979504|ref|ZP_07791186.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 516]
gi|384514505|ref|YP_005709598.1| GTP-binding protein YchF [Enterococcus faecalis OG1RF]
gi|384517070|ref|YP_005704375.1| GTP-dependent nucleic acid-binding protein engD-like protein
[Enterococcus faecalis 62]
gi|397701416|ref|YP_006539204.1| GTP-dependent nucleic acid-binding protein engD- like protein
[Enterococcus faecalis D32]
gi|421513538|ref|ZP_15960304.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecalis ATCC 29212]
gi|422685188|ref|ZP_16743412.1| GTP-binding protein YchF [Enterococcus faecalis TX4000]
gi|422687189|ref|ZP_16745374.1| GTP-binding protein YchF [Enterococcus faecalis TX0630]
gi|422691524|ref|ZP_16749559.1| GTP-binding protein YchF [Enterococcus faecalis TX0031]
gi|422694272|ref|ZP_16752265.1| GTP-binding protein YchF [Enterococcus faecalis TX4244]
gi|422697345|ref|ZP_16755290.1| GTP-binding protein YchF [Enterococcus faecalis TX1346]
gi|422699437|ref|ZP_16757302.1| GTP-binding protein YchF [Enterococcus faecalis TX1342]
gi|422702863|ref|ZP_16760692.1| GTP-binding protein YchF [Enterococcus faecalis TX1302]
gi|422709180|ref|ZP_16766692.1| GTP-binding protein YchF [Enterococcus faecalis TX0027]
gi|422712077|ref|ZP_16768855.1| GTP-binding protein YchF [Enterococcus faecalis TX0309A]
gi|422715536|ref|ZP_16772254.1| GTP-binding protein YchF [Enterococcus faecalis TX0309B]
gi|422719236|ref|ZP_16775884.1| GTP-binding protein YchF [Enterococcus faecalis TX0017]
gi|422723364|ref|ZP_16779902.1| GTP-binding protein YchF [Enterococcus faecalis TX2137]
gi|422726316|ref|ZP_16782764.1| GTP-binding protein YchF [Enterococcus faecalis TX0312]
gi|422728145|ref|ZP_16784563.1| GTP-binding protein YchF [Enterococcus faecalis TX0012]
gi|422730504|ref|ZP_16786893.1| GTP-binding protein YchF [Enterococcus faecalis TX0645]
gi|422734781|ref|ZP_16791064.1| GTP-binding protein YchF [Enterococcus faecalis TX1341]
gi|422741744|ref|ZP_16795767.1| GTP-binding protein YchF [Enterococcus faecalis TX2141]
gi|422867819|ref|ZP_16914387.1| GTP-binding protein YchF [Enterococcus faecalis TX1467]
gi|424672363|ref|ZP_18109330.1| GTP-binding protein YchF [Enterococcus faecalis 599]
gi|424678198|ref|ZP_18115040.1| GTP-binding protein YchF [Enterococcus faecalis ERV103]
gi|424680493|ref|ZP_18117299.1| GTP-binding protein YchF [Enterococcus faecalis ERV116]
gi|424682380|ref|ZP_18119152.1| GTP-binding protein YchF [Enterococcus faecalis ERV129]
gi|424685974|ref|ZP_18122649.1| GTP-binding protein YchF [Enterococcus faecalis ERV25]
gi|424689077|ref|ZP_18125670.1| GTP-binding protein YchF [Enterococcus faecalis ERV31]
gi|424693592|ref|ZP_18130021.1| GTP-binding protein YchF [Enterococcus faecalis ERV37]
gi|424697998|ref|ZP_18134307.1| GTP-binding protein YchF [Enterococcus faecalis ERV41]
gi|424699961|ref|ZP_18136169.1| GTP-binding protein YchF [Enterococcus faecalis ERV62]
gi|424702884|ref|ZP_18139025.1| GTP-binding protein YchF [Enterococcus faecalis ERV63]
gi|424707462|ref|ZP_18143445.1| GTP-binding protein YchF [Enterococcus faecalis ERV65]
gi|424716010|ref|ZP_18145329.1| GTP-binding protein YchF [Enterococcus faecalis ERV68]
gi|424720210|ref|ZP_18149320.1| GTP-binding protein YchF [Enterococcus faecalis ERV72]
gi|424723347|ref|ZP_18152337.1| GTP-binding protein YchF [Enterococcus faecalis ERV73]
gi|424727229|ref|ZP_18155863.1| GTP-binding protein YchF [Enterococcus faecalis ERV81]
gi|424741540|ref|ZP_18169887.1| GTP-binding protein YchF [Enterococcus faecalis ERV85]
gi|424749377|ref|ZP_18177483.1| GTP-binding protein YchF [Enterococcus faecalis ERV93]
gi|424756243|ref|ZP_18184073.1| GTP-binding protein YchF [Enterococcus faecalis R508]
gi|428768378|ref|YP_007154489.1| GTP-binding protein, GTP1/OBG family [Enterococcus faecalis str.
Symbioflor 1]
gi|430362713|ref|ZP_19427190.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
faecalis OG1X]
gi|430372465|ref|ZP_19429809.1| hypothetical protein EFM7_2596 [Enterococcus faecalis M7]
gi|29345205|gb|AAO82961.1| GTP-binding protein, GTP1/OBG family [Enterococcus faecalis V583]
gi|227074416|gb|EEI12379.1| GTP-binding translation factor YchF [Enterococcus faecalis TX0104]
gi|227175223|gb|EEI56195.1| GTP-binding translation factor YchF [Enterococcus faecalis HH22]
gi|229304171|gb|EEN70167.1| GTP-binding translation factor YchF [Enterococcus faecalis ATCC
29200]
gi|229307750|gb|EEN73737.1| GTP-binding translation factor YchF [Enterococcus faecalis TX1322]
gi|255962531|gb|EET95007.1| translation-associated GTPase [Enterococcus faecalis T1]
gi|255967335|gb|EET97957.1| translation-associated GTPase [Enterococcus faecalis T2]
gi|256598091|gb|EEU17267.1| translation-associated GTPase [Enterococcus faecalis ATCC 4200]
gi|256683069|gb|EEU22764.1| translation-associated GTPase [Enterococcus faecalis T3]
gi|256709458|gb|EEU24505.1| translation-associated GTPase [Enterococcus faecalis T8]
gi|256947548|gb|EEU64180.1| translation-associated GTPase [Enterococcus faecalis DS5]
gi|256951412|gb|EEU68044.1| translation-associated GTPase [Enterococcus faecalis Merz96]
gi|256986759|gb|EEU74061.1| translation-associated GTPase [Enterococcus faecalis JH1]
gi|256989341|gb|EEU76643.1| translation-associated GTPase [Enterococcus faecalis E1Sol]
gi|256991999|gb|EEU79301.1| translation-associated GTPase [Enterococcus faecalis Fly1]
gi|256995829|gb|EEU83131.1| translation-associated GTPase [Enterococcus faecalis D6]
gi|256997256|gb|EEU83776.1| translation-associated GTPase [Enterococcus faecalis CH188]
gi|257159214|gb|EEU89174.1| translation-associated GTPase [Enterococcus faecalis ARO1/DG]
gi|257160705|gb|EEU90665.1| translation-associated GTPase [Enterococcus faecalis T11]
gi|257163132|gb|EEU93092.1| translation-associated GTPase [Enterococcus faecalis X98]
gi|291077893|gb|EFE15257.1| GTP-binding protein YchF [Enterococcus faecalis R712]
gi|291082380|gb|EFE19343.1| GTP-binding protein YchF [Enterococcus faecalis S613]
gi|294451675|gb|EFG20130.1| GTP-binding protein YchF [Enterococcus faecalis PC1.1]
gi|295112313|emb|CBL30950.1| GTP-binding protein YchF [Enterococcus sp. 7L76]
gi|300848919|gb|EFK76672.1| GTP-binding protein YchF [Enterococcus faecalis TUSoD Ef11]
gi|306498972|gb|EFM68464.1| GTP-binding protein YchF [Enterococcus faecalis TX0411]
gi|306502378|gb|EFM71655.1| GTP-binding protein YchF [Enterococcus faecalis TX0109]
gi|306503370|gb|EFM72619.1| GTP-binding protein YchF [Enterococcus faecalis TX0860]
gi|306505983|gb|EFM75155.1| GTP-binding protein YchF [Enterococcus faecalis TX2134]
gi|306514791|gb|EFM83341.1| GTP-binding protein YchF [Enterococcus faecalis TX4248]
gi|310625291|gb|EFQ08574.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 512]
gi|310629112|gb|EFQ12395.1| GTP-binding protein YchF [Enterococcus faecalis TX0102]
gi|310633653|gb|EFQ16936.1| GTP-binding protein YchF [Enterococcus faecalis TX0635]
gi|311287686|gb|EFQ66242.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 516]
gi|311291571|gb|EFQ70127.1| GTP-binding protein YchF [Enterococcus faecalis TX0470]
gi|315026608|gb|EFT38540.1| GTP-binding protein YchF [Enterococcus faecalis TX2137]
gi|315030102|gb|EFT42034.1| GTP-binding protein YchF [Enterococcus faecalis TX4000]
gi|315033595|gb|EFT45527.1| GTP-binding protein YchF [Enterococcus faecalis TX0017]
gi|315036260|gb|EFT48192.1| GTP-binding protein YchF [Enterococcus faecalis TX0027]
gi|315143574|gb|EFT87590.1| GTP-binding protein YchF [Enterococcus faecalis TX2141]
gi|315148287|gb|EFT92303.1| GTP-binding protein YchF [Enterococcus faecalis TX4244]
gi|315151252|gb|EFT95268.1| GTP-binding protein YchF [Enterococcus faecalis TX0012]
gi|315153737|gb|EFT97753.1| GTP-binding protein YchF [Enterococcus faecalis TX0031]
gi|315158674|gb|EFU02691.1| GTP-binding protein YchF [Enterococcus faecalis TX0312]
gi|315163397|gb|EFU07414.1| GTP-binding protein YchF [Enterococcus faecalis TX0645]
gi|315165664|gb|EFU09681.1| GTP-binding protein YchF [Enterococcus faecalis TX1302]
gi|315168470|gb|EFU12487.1| GTP-binding protein YchF [Enterococcus faecalis TX1341]
gi|315172088|gb|EFU16105.1| GTP-binding protein YchF [Enterococcus faecalis TX1342]
gi|315174221|gb|EFU18238.1| GTP-binding protein YchF [Enterococcus faecalis TX1346]
gi|315576183|gb|EFU88374.1| GTP-binding protein YchF [Enterococcus faecalis TX0309B]
gi|315579762|gb|EFU91953.1| GTP-binding protein YchF [Enterococcus faecalis TX0630]
gi|315582994|gb|EFU95185.1| GTP-binding protein YchF [Enterococcus faecalis TX0309A]
gi|323479203|gb|ADX78642.1| GTP-dependent nucleic acid-binding protein engD-like protein
[Enterococcus faecalis 62]
gi|327536394|gb|AEA95228.1| GTP-binding protein YchF [Enterococcus faecalis OG1RF]
gi|329577031|gb|EGG58506.1| GTP-binding protein YchF [Enterococcus faecalis TX1467]
gi|397338055|gb|AFO45727.1| GTP-dependent nucleic acid-binding protein engD- like protein
[Enterococcus faecalis D32]
gi|401673359|gb|EJS79751.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecalis ATCC 29212]
gi|402351967|gb|EJU86834.1| GTP-binding protein YchF [Enterococcus faecalis ERV103]
gi|402354275|gb|EJU89087.1| GTP-binding protein YchF [Enterococcus faecalis ERV116]
gi|402356017|gb|EJU90762.1| GTP-binding protein YchF [Enterococcus faecalis 599]
gi|402367900|gb|EJV02235.1| GTP-binding protein YchF [Enterococcus faecalis ERV129]
gi|402368152|gb|EJV02474.1| GTP-binding protein YchF [Enterococcus faecalis ERV25]
gi|402369383|gb|EJV03664.1| GTP-binding protein YchF [Enterococcus faecalis ERV31]
gi|402373774|gb|EJV07832.1| GTP-binding protein YchF [Enterococcus faecalis ERV37]
gi|402374093|gb|EJV08137.1| GTP-binding protein YchF [Enterococcus faecalis ERV41]
gi|402375134|gb|EJV09130.1| GTP-binding protein YchF [Enterococcus faecalis ERV62]
gi|402384648|gb|EJV18192.1| GTP-binding protein YchF [Enterococcus faecalis ERV65]
gi|402386010|gb|EJV19525.1| GTP-binding protein YchF [Enterococcus faecalis ERV63]
gi|402389021|gb|EJV22437.1| GTP-binding protein YchF [Enterococcus faecalis ERV68]
gi|402393962|gb|EJV27165.1| GTP-binding protein YchF [Enterococcus faecalis ERV72]
gi|402397287|gb|EJV30314.1| GTP-binding protein YchF [Enterococcus faecalis ERV81]
gi|402398754|gb|EJV31677.1| GTP-binding protein YchF [Enterococcus faecalis ERV73]
gi|402401340|gb|EJV34118.1| GTP-binding protein YchF [Enterococcus faecalis ERV85]
gi|402407876|gb|EJV40375.1| GTP-binding protein YchF [Enterococcus faecalis ERV93]
gi|402408533|gb|EJV40994.1| GTP-binding protein YchF [Enterococcus faecalis R508]
gi|427186551|emb|CCO73775.1| GTP-binding protein, GTP1/OBG family [Enterococcus faecalis str.
Symbioflor 1]
gi|429511984|gb|ELA01604.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
faecalis OG1X]
gi|429514642|gb|ELA04180.1| hypothetical protein EFM7_2596 [Enterococcus faecalis M7]
Length = 371
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 257/355 (72%), Gaps = 11/355 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I+ +
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQA 229
VDP +D+D INLEL+ +DLD I KR ++ K KAKD ++ E A L+KI+
Sbjct: 120 ADFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAV----EELAVLDKIKPV 175
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +G AR++ E +K L LLT KP++YVANV+E ++ADP +N +V +V N A+
Sbjct: 176 LEEGLSARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATS 235
Query: 290 LQSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + +SA+ E E+ EL SEE + E+L ++G+ +SGL LIR+ Y LLGL TYFT+GE
Sbjct: 236 ENAEVIVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+E +AWT R G+ APQAAG+IHSDFE+GFIRAETV+Y+D G++ AA+E G V
Sbjct: 296 QEVRAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRV 350
>gi|392530428|ref|ZP_10277565.1| GTP-binding protein YchF [Carnobacterium maltaromaticum ATCC 35586]
gi|414085728|ref|YP_006994442.1| GTPase [Carnobacterium maltaromaticum LMA28]
gi|412999318|emb|CCO13127.1| GTPase of unknown function family protein [Carnobacterium
maltaromaticum LMA28]
Length = 366
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGMVEVPDYRLARLTELVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF+D +I HV+G++
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFDDENITHVDGRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ INLELV +DL+ +EKR + KL + K KD+ AE A LEKI+ L
Sbjct: 120 DPIADIETINLELVLADLESVEKRHARVGKLARTKDKDAL------AEFAVLEKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK AR++ N+ E +K L LLT+KP++YVANV+E ++ D N +V +V A+
Sbjct: 174 EGKSARTIEFNEEEAKIVKSLFLLTIKPVLYVANVSEDEIGDAEENEYVKQVREFAATEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
SG I A++E E+ EL +E+ E+L LG+ ESGL LIRS Y LLGL TYFT+G +E
Sbjct: 234 SGVNVICARIEEEIAELDDDEKAEFLTELGIKESGLDQLIRSAYDLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT G+ APQAAG+IHSDFE GFIRAETV++ D ++AAA+E G V
Sbjct: 294 RAWTFVKGIKAPQAAGIIHSDFEHGFIRAETVSFADLDKYENMAAAKEAGRV 345
>gi|146296726|ref|YP_001180497.1| GTP-binding protein YchF [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410302|gb|ABP67306.1| GTP-binding protein YchF [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 362
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/349 (57%), Positives = 254/349 (72%), Gaps = 10/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLEVLAKIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D++IVHV G VDP
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDSEIVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
K D++ INLEL+F+DL+ +E+R+EK +K AK+S KE A E LEKI L G+
Sbjct: 120 KRDIETINLELIFADLEVLERRLEKTRK-LAKNS----KEAAHELEILEKIYSTLESGRM 174
Query: 236 ARSVTLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR++ +D E + L LLT KP IY AN++E D+ N +V V +A+ S
Sbjct: 175 ARTLKFDDEEDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVNEIAAQEGSEV 232
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKLEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAW 292
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFIRAE V +D V G A A+EKGLV
Sbjct: 293 TIKKGTKAPQAAGKIHSDFERGFIRAEVVPFDVLVECGGFAQAKEKGLV 341
>gi|422707558|ref|ZP_16765251.1| GTP-binding protein YchF [Enterococcus faecalis TX0043]
gi|315155037|gb|EFT99053.1| GTP-binding protein YchF [Enterococcus faecalis TX0043]
Length = 371
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 257/355 (72%), Gaps = 11/355 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I+ +
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQA 229
VDP +D+D INLEL+ +DLD I KR ++ K KAKD ++ E A L+KI+
Sbjct: 120 ADFVDPLADIDTINLELILADLDSINKRYTRVTKMAKAKDKEAV----EELAVLDKIKPV 175
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +G AR++ E +K L LLT KP++YVANV+E ++ADP +N +V +V N A+
Sbjct: 176 LEEGLSARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATS 235
Query: 290 LQSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + +SA+ E E+ EL SEE + E+L ++G+ +SGL LIR+ Y LLGL TYFT+GE
Sbjct: 236 ENAEVIVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+E +AWT R G+ APQAAG+IHSDFE+GFIRAETV+Y+D G++ AA+E G V
Sbjct: 296 QEVRAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRV 350
>gi|229020700|ref|ZP_04177427.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1273]
gi|229026916|ref|ZP_04183239.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1272]
gi|228734374|gb|EEL85045.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1272]
gi|228740595|gb|EEL90866.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1273]
Length = 369
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 258/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E+ L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EQEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|326804284|ref|YP_004322102.1| GTP-binding protein YchF [Aerococcus urinae ACS-120-V-Col10a]
gi|326651413|gb|AEA01596.1| GTP-binding protein YchF [Aerococcus urinae ACS-120-V-Col10a]
Length = 365
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 254/348 (72%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ ++ + +AAN+PF TI+PNVG+V VPD RL LS + +
Sbjct: 1 MPLTAGIVGLPNVGKSTLFNAITKS-QVEAANYPFATIDPNVGVVEVPDQRLWKLSEIYQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I VVRCF+D +I HV+G +
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICHVVRCFDDGNITHVSGGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P+ D++ INLELV +DL+ + KR EK +K K+KD + E L+K+++AL G
Sbjct: 120 NPQDDIETINLELVLADLESVNKRYEKAVKMAKSKDHDAV----TEANTLKKLKEALEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V N+ E KQL LLTMKP++YVANV+E D +D G N +V +V LA S
Sbjct: 176 KPARTVDFNEEEEAVAKQLFLLTMKPVLYVANVSEDDASD-GDNDYVKQVRQLAQAEGSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA++E +L + E+R +L LG+ +SGL LI+ Y LLGL TYFT+GE+E +A
Sbjct: 235 VVVVSAKLEEDLATMDEEDRDMFLEDLGMDQSGLDVLIQQAYKLLGLATYFTAGEQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + GM APQAAG+IHSDFE+GFIRAETV YDD V GS+ A +E G
Sbjct: 295 WTFKKGMHAPQAAGIIHSDFERGFIRAETVHYDDLVEYGSIQACKEAG 342
>gi|320528923|ref|ZP_08030015.1| GTP-binding protein YchF [Selenomonas artemidis F0399]
gi|320138553|gb|EFW30443.1| GTP-binding protein YchF [Selenomonas artemidis F0399]
Length = 381
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/349 (57%), Positives = 252/349 (72%), Gaps = 5/349 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 16 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLTVLTDLYHS 74
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 75 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 134
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
P D+D+I EL +DL+ +EKR K+ K S+ AE AALE+++ L G+P
Sbjct: 135 PLRDIDIIETELCLADLEAVEKRAAKVTKLLKSGSKEAK---AEAAALERLKSVLDAGRP 191
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGR 294
AR L++ E+ ++ L LLT KPI+YVANV E + A NPHV V A +
Sbjct: 192 AREAELSEEEQTLLRDLNLLTRKPILYVANVGEDEAATADAENPHVQTVKEYAGRTGAQV 251
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+SA++E E+ EL +EE V +L LG+ ESGL LI ++LLGL+T+ T+GE E +AW
Sbjct: 252 VTVSARLEEEIAELDAEEAVVFLEDLGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAW 311
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G TAP+AAG IH+DFE+GFIRAE V+YDD V+ GS+AAAR+KGLV
Sbjct: 312 TITRGTTAPKAAGKIHTDFERGFIRAEIVSYDDLVSLGSVAAARDKGLV 360
>gi|294627826|ref|ZP_06706405.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292597740|gb|EFF41898.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 363
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +L LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDSFLTDLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAG 340
>gi|257885575|ref|ZP_05665228.1| translation-associated GTPase [Enterococcus faecium 1,231,501]
gi|257821431|gb|EEV48561.1| translation-associated GTPase [Enterococcus faecium 1,231,501]
Length = 366
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFATEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|430853349|ref|ZP_19471079.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1258]
gi|430541171|gb|ELA81348.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1258]
Length = 366
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFATEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|256963946|ref|ZP_05568117.1| translation-associated GTPase [Enterococcus faecalis HIP11704]
gi|307273950|ref|ZP_07555160.1| GTP-binding protein YchF [Enterococcus faecalis TX0855]
gi|256954442|gb|EEU71074.1| translation-associated GTPase [Enterococcus faecalis HIP11704]
gi|306509258|gb|EFM78318.1| GTP-binding protein YchF [Enterococcus faecalis TX0855]
Length = 371
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/355 (53%), Positives = 257/355 (72%), Gaps = 11/355 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I+ +
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQA 229
VDP +D+D INLEL+ +DLD I KR ++ K KAKD ++ E A L+KI+
Sbjct: 120 ADFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAV----EELAVLDKIKPV 175
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +G AR++ E +K L LLT KP++YVANV+E ++ADP +N +V ++ N A+
Sbjct: 176 LEEGLSARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQIRNFATS 235
Query: 290 LQSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + +SA+ E E+ EL SEE + E+L ++G+ +SGL LIR+ Y LLGL TYFT+GE
Sbjct: 236 ENAEVIVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+E +AWT R G+ APQAAG+IHSDFE+GFIRAETV+Y+D G++ AA+E G V
Sbjct: 296 QEVRAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRV 350
>gi|226953006|ref|ZP_03823470.1| translation-associated GTPase [Acinetobacter sp. ATCC 27244]
gi|294650594|ref|ZP_06727951.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
haemolyticus ATCC 19194]
gi|226836327|gb|EEH68710.1| translation-associated GTPase [Acinetobacter sp. ATCC 27244]
gi|292823591|gb|EFF82437.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
haemolyticus ATCC 19194]
Length = 363
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 258/377 (68%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DLD + K + +L K + + A KAALEKIQ L +GK
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAI---ATKAALEKIQPLLDEGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 177 PARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ A+E G W L
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECISYDDFIQYNGENGAKEAG--KW-----RLEG 346
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 347 KTYVVQDGDVLHFRFNV 363
>gi|69247500|ref|ZP_00604370.1| Conserved hypothetical protein 92 [Enterococcus faecium DO]
gi|257878634|ref|ZP_05658287.1| translation-associated GTPase [Enterococcus faecium 1,230,933]
gi|257881300|ref|ZP_05660953.1| translation-associated GTPase [Enterococcus faecium 1,231,502]
gi|257888109|ref|ZP_05667762.1| translation-associated GTPase [Enterococcus faecium 1,141,733]
gi|257890517|ref|ZP_05670170.1| translation-associated GTPase [Enterococcus faecium 1,231,410]
gi|257893093|ref|ZP_05672746.1| translation-associated GTPase [Enterococcus faecium 1,231,408]
gi|257896272|ref|ZP_05675925.1| translation-associated GTPase [Enterococcus faecium Com12]
gi|257899259|ref|ZP_05678912.1| translation-associated GTPase [Enterococcus faecium Com15]
gi|260558215|ref|ZP_05830411.1| translation-associated GTPase [Enterococcus faecium C68]
gi|293379353|ref|ZP_06625497.1| GTP-binding protein YchF [Enterococcus faecium PC4.1]
gi|293563239|ref|ZP_06677691.1| GTP-binding protein YchF [Enterococcus faecium E1162]
gi|293569171|ref|ZP_06680477.1| GTP-binding protein YchF [Enterococcus faecium E1071]
gi|293572706|ref|ZP_06683670.1| GTP-binding protein YchF [Enterococcus faecium E980]
gi|294619733|ref|ZP_06699138.1| GTP-binding protein YchF [Enterococcus faecium E1679]
gi|294623747|ref|ZP_06702575.1| GTP-binding protein YchF [Enterococcus faecium U0317]
gi|389869875|ref|YP_006377298.1| GTP-binding translation factor YchF [Enterococcus faecium DO]
gi|406580270|ref|ZP_11055484.1| GTP-binding protein YchF [Enterococcus sp. GMD4E]
gi|406582514|ref|ZP_11057633.1| GTP-binding protein YchF [Enterococcus sp. GMD3E]
gi|406584788|ref|ZP_11059807.1| GTP-binding protein YchF [Enterococcus sp. GMD2E]
gi|406589592|ref|ZP_11064023.1| GTP-binding protein YchF [Enterococcus sp. GMD1E]
gi|415892375|ref|ZP_11549912.1| GTP-binding protein YchF [Enterococcus faecium E4453]
gi|416143518|ref|ZP_11599792.1| GTP-binding protein YchF [Enterococcus faecium E4452]
gi|427396869|ref|ZP_18889495.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
durans FB129-CNAB-4]
gi|430831750|ref|ZP_19449798.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0333]
gi|430836307|ref|ZP_19454288.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0680]
gi|430842565|ref|ZP_19460478.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1007]
gi|430842985|ref|ZP_19460887.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1050]
gi|430848148|ref|ZP_19465975.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1133]
gi|430855842|ref|ZP_19473548.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1392]
gi|430861163|ref|ZP_19478752.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1573]
gi|430952205|ref|ZP_19486248.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1576]
gi|430998673|ref|ZP_19488056.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1578]
gi|431036299|ref|ZP_19492069.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1590]
gi|431081778|ref|ZP_19495868.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1604]
gi|431116715|ref|ZP_19497981.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1613]
gi|431235073|ref|ZP_19503096.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1622]
gi|431255542|ref|ZP_19504665.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1623]
gi|431303612|ref|ZP_19508459.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1626]
gi|431380574|ref|ZP_19510955.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1627]
gi|431437985|ref|ZP_19513148.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1630]
gi|431506958|ref|ZP_19515784.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1634]
gi|431545144|ref|ZP_19518785.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1731]
gi|431592424|ref|ZP_19521660.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1861]
gi|431726703|ref|ZP_19525454.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1904]
gi|431739140|ref|ZP_19528080.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1972]
gi|431740577|ref|ZP_19529489.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2039]
gi|431749496|ref|ZP_19538236.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2297]
gi|431753207|ref|ZP_19541884.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2620]
gi|431756035|ref|ZP_19544677.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2883]
gi|431758032|ref|ZP_19546661.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3083]
gi|431760014|ref|ZP_19548618.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3346]
gi|431763298|ref|ZP_19551851.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3548]
gi|431768144|ref|ZP_19556585.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1321]
gi|431769353|ref|ZP_19557763.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1644]
gi|431774643|ref|ZP_19562949.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2369]
gi|431777523|ref|ZP_19565776.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2560]
gi|431779796|ref|ZP_19567987.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4389]
gi|431782426|ref|ZP_19570559.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6012]
gi|431784247|ref|ZP_19572289.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6045]
gi|447913945|ref|YP_007395357.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecium NRRL B-2354]
gi|68194825|gb|EAN09300.1| Conserved hypothetical protein 92 [Enterococcus faecium DO]
gi|257812862|gb|EEV41620.1| translation-associated GTPase [Enterococcus faecium 1,230,933]
gi|257816958|gb|EEV44286.1| translation-associated GTPase [Enterococcus faecium 1,231,502]
gi|257824163|gb|EEV51095.1| translation-associated GTPase [Enterococcus faecium 1,141,733]
gi|257826877|gb|EEV53503.1| translation-associated GTPase [Enterococcus faecium 1,231,410]
gi|257829472|gb|EEV56079.1| translation-associated GTPase [Enterococcus faecium 1,231,408]
gi|257832837|gb|EEV59258.1| translation-associated GTPase [Enterococcus faecium Com12]
gi|257837171|gb|EEV62245.1| translation-associated GTPase [Enterococcus faecium Com15]
gi|260075389|gb|EEW63695.1| translation-associated GTPase [Enterococcus faecium C68]
gi|291588140|gb|EFF19982.1| GTP-binding protein YchF [Enterococcus faecium E1071]
gi|291594003|gb|EFF25472.1| GTP-binding protein YchF [Enterococcus faecium E1679]
gi|291596701|gb|EFF27924.1| GTP-binding protein YchF [Enterococcus faecium U0317]
gi|291604778|gb|EFF34260.1| GTP-binding protein YchF [Enterococcus faecium E1162]
gi|291607198|gb|EFF36556.1| GTP-binding protein YchF [Enterococcus faecium E980]
gi|292641876|gb|EFF60042.1| GTP-binding protein YchF [Enterococcus faecium PC4.1]
gi|364089237|gb|EHM31943.1| GTP-binding protein YchF [Enterococcus faecium E4452]
gi|364093363|gb|EHM35641.1| GTP-binding protein YchF [Enterococcus faecium E4453]
gi|388535124|gb|AFK60316.1| GTP-binding translation factor YchF [Enterococcus faecium DO]
gi|404454287|gb|EKA01238.1| GTP-binding protein YchF [Enterococcus sp. GMD4E]
gi|404457970|gb|EKA04442.1| GTP-binding protein YchF [Enterococcus sp. GMD3E]
gi|404463592|gb|EKA09203.1| GTP-binding protein YchF [Enterococcus sp. GMD2E]
gi|404470556|gb|EKA15177.1| GTP-binding protein YchF [Enterococcus sp. GMD1E]
gi|425722616|gb|EKU85510.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
durans FB129-CNAB-4]
gi|430480391|gb|ELA57565.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0333]
gi|430488434|gb|ELA65105.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0680]
gi|430492986|gb|ELA69322.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1007]
gi|430498039|gb|ELA74047.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1050]
gi|430535814|gb|ELA76211.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1133]
gi|430546384|gb|ELA86346.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1392]
gi|430550196|gb|ELA89993.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1573]
gi|430557340|gb|ELA96799.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1576]
gi|430562839|gb|ELB02070.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1590]
gi|430563334|gb|ELB02559.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1578]
gi|430565710|gb|ELB04856.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1604]
gi|430568495|gb|ELB07542.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1613]
gi|430572933|gb|ELB11769.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1622]
gi|430577740|gb|ELB16320.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1623]
gi|430580253|gb|ELB18733.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1626]
gi|430582442|gb|ELB20869.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1627]
gi|430586820|gb|ELB25062.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1630]
gi|430587345|gb|ELB25578.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1634]
gi|430592049|gb|ELB30076.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1861]
gi|430592192|gb|ELB30214.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1731]
gi|430595726|gb|ELB33609.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1904]
gi|430596683|gb|ELB34507.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1972]
gi|430602947|gb|ELB40491.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2039]
gi|430611493|gb|ELB48580.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2297]
gi|430612712|gb|ELB49747.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2620]
gi|430616150|gb|ELB53075.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2883]
gi|430618537|gb|ELB55384.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3083]
gi|430622992|gb|ELB59702.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3548]
gi|430625283|gb|ELB61923.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3346]
gi|430629873|gb|ELB66261.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1321]
gi|430633853|gb|ELB70004.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2369]
gi|430636928|gb|ELB72972.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1644]
gi|430639137|gb|ELB75018.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2560]
gi|430641364|gb|ELB77173.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4389]
gi|430647063|gb|ELB82511.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6012]
gi|430649821|gb|ELB85188.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6045]
gi|445189654|gb|AGE31296.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecium NRRL B-2354]
Length = 366
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|269797388|ref|YP_003311288.1| GTP-binding protein YchF [Veillonella parvula DSM 2008]
gi|269094017|gb|ACZ24008.1| GTP-binding protein YchF [Veillonella parvula DSM 2008]
Length = 368
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/352 (54%), Positives = 260/352 (73%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV G
Sbjct: 60 FSSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AELPLLERIIEGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R+ L++ E + IK+L LLT KP +YVAN++E +++D +N +V V A +
Sbjct: 176 EAKPVRAQGLDEDELEMIKELTLLTAKPSLYVANISEDEVSDYSANEYVKRVEEYAKNEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E
Sbjct: 236 AGIVVVSARIESEIAELSDEESAAFLEDLGLDESGLTKLIKASYALLGLINYFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV
Sbjct: 296 RAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLV 347
>gi|383330170|ref|YP_005356054.1| translation-associated GTPase [Enterococcus faecium Aus0004]
gi|378939864|gb|AFC64936.1| translation-associated GTPase [Enterococcus faecium Aus0004]
Length = 433
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 68 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 126
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 127 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 186
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 187 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 242
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 243 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 302
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 303 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 362
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 363 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 412
>gi|227550625|ref|ZP_03980674.1| GTP-binding translation factor YchF [Enterococcus faecium TX1330]
gi|314940143|ref|ZP_07847323.1| GTP-binding protein YchF [Enterococcus faecium TX0133a04]
gi|314943026|ref|ZP_07849830.1| GTP-binding protein YchF [Enterococcus faecium TX0133C]
gi|314948144|ref|ZP_07851540.1| GTP-binding protein YchF [Enterococcus faecium TX0082]
gi|314953442|ref|ZP_07856360.1| GTP-binding protein YchF [Enterococcus faecium TX0133A]
gi|314993819|ref|ZP_07859155.1| GTP-binding protein YchF [Enterococcus faecium TX0133B]
gi|314998156|ref|ZP_07863038.1| GTP-binding protein YchF [Enterococcus faecium TX0133a01]
gi|424764514|ref|ZP_18191938.1| GTP-binding protein YchF [Enterococcus faecium TX1337RF]
gi|424793332|ref|ZP_18219457.1| GTP-binding protein YchF [Enterococcus faecium V689]
gi|424806856|ref|ZP_18232279.1| GTP-binding protein YchF [Enterococcus faecium S447]
gi|424819227|ref|ZP_18244353.1| GTP-binding protein YchF [Enterococcus faecium R501]
gi|424857944|ref|ZP_18282023.1| GTP-binding protein YchF [Enterococcus faecium R499]
gi|424907557|ref|ZP_18331036.1| GTP-binding protein YchF [Enterococcus faecium R497]
gi|424951468|ref|ZP_18366562.1| GTP-binding protein YchF [Enterococcus faecium R496]
gi|424953278|ref|ZP_18368251.1| GTP-binding protein YchF [Enterococcus faecium R494]
gi|424957776|ref|ZP_18372483.1| GTP-binding protein YchF [Enterococcus faecium R446]
gi|424962349|ref|ZP_18376711.1| GTP-binding protein YchF [Enterococcus faecium P1986]
gi|424963530|ref|ZP_18377740.1| GTP-binding protein YchF [Enterococcus faecium P1190]
gi|424967270|ref|ZP_18380977.1| GTP-binding protein YchF [Enterococcus faecium P1140]
gi|424975883|ref|ZP_18389010.1| GTP-binding protein YchF [Enterococcus faecium P1137]
gi|424981733|ref|ZP_18394443.1| GTP-binding protein YchF [Enterococcus faecium ERV99]
gi|424984800|ref|ZP_18397317.1| GTP-binding protein YchF [Enterococcus faecium ERV69]
gi|424989013|ref|ZP_18401302.1| GTP-binding protein YchF [Enterococcus faecium ERV38]
gi|424990997|ref|ZP_18403180.1| GTP-binding protein YchF [Enterococcus faecium ERV26]
gi|424996481|ref|ZP_18408284.1| GTP-binding protein YchF [Enterococcus faecium ERV168]
gi|424998996|ref|ZP_18410649.1| GTP-binding protein YchF [Enterococcus faecium ERV165]
gi|425002221|ref|ZP_18413669.1| GTP-binding protein YchF [Enterococcus faecium ERV161]
gi|425005651|ref|ZP_18416872.1| GTP-binding protein YchF [Enterococcus faecium ERV102]
gi|425008339|ref|ZP_18419425.1| GTP-binding protein YchF [Enterococcus faecium ERV1]
gi|425012497|ref|ZP_18423307.1| GTP-binding protein YchF [Enterococcus faecium E422]
gi|425013687|ref|ZP_18424406.1| GTP-binding protein YchF [Enterococcus faecium E417]
gi|425016691|ref|ZP_18427240.1| GTP-binding protein YchF [Enterococcus faecium C621]
gi|425020963|ref|ZP_18431248.1| GTP-binding protein YchF [Enterococcus faecium C497]
gi|425024282|ref|ZP_18434355.1| GTP-binding protein YchF [Enterococcus faecium C1904]
gi|425033629|ref|ZP_18438583.1| GTP-binding protein YchF [Enterococcus faecium 515]
gi|425034578|ref|ZP_18439461.1| GTP-binding protein YchF [Enterococcus faecium 514]
gi|425040412|ref|ZP_18444886.1| GTP-binding protein YchF [Enterococcus faecium 513]
gi|425040635|ref|ZP_18445090.1| GTP-binding protein YchF [Enterococcus faecium 511]
gi|425047055|ref|ZP_18451032.1| GTP-binding protein YchF [Enterococcus faecium 510]
gi|425050505|ref|ZP_18454243.1| GTP-binding protein YchF [Enterococcus faecium 509]
gi|425053367|ref|ZP_18456913.1| GTP-binding protein YchF [Enterococcus faecium 506]
gi|425054264|ref|ZP_18457776.1| GTP-binding protein YchF [Enterococcus faecium 505]
gi|425062480|ref|ZP_18465633.1| GTP-binding protein YchF [Enterococcus faecium 503]
gi|227180226|gb|EEI61198.1| GTP-binding translation factor YchF [Enterococcus faecium TX1330]
gi|313587868|gb|EFR66713.1| GTP-binding protein YchF [Enterococcus faecium TX0133a01]
gi|313591710|gb|EFR70555.1| GTP-binding protein YchF [Enterococcus faecium TX0133B]
gi|313594545|gb|EFR73390.1| GTP-binding protein YchF [Enterococcus faecium TX0133A]
gi|313598226|gb|EFR77071.1| GTP-binding protein YchF [Enterococcus faecium TX0133C]
gi|313640648|gb|EFS05228.1| GTP-binding protein YchF [Enterococcus faecium TX0133a04]
gi|313645398|gb|EFS09978.1| GTP-binding protein YchF [Enterococcus faecium TX0082]
gi|402419067|gb|EJV51349.1| GTP-binding protein YchF [Enterococcus faecium TX1337RF]
gi|402916450|gb|EJX37328.1| GTP-binding protein YchF [Enterococcus faecium V689]
gi|402918779|gb|EJX39441.1| GTP-binding protein YchF [Enterococcus faecium S447]
gi|402926527|gb|EJX46562.1| GTP-binding protein YchF [Enterococcus faecium R501]
gi|402927814|gb|EJX47743.1| GTP-binding protein YchF [Enterococcus faecium R499]
gi|402930087|gb|EJX49784.1| GTP-binding protein YchF [Enterococcus faecium R496]
gi|402930148|gb|EJX49839.1| GTP-binding protein YchF [Enterococcus faecium R497]
gi|402939436|gb|EJX58344.1| GTP-binding protein YchF [Enterococcus faecium R494]
gi|402941001|gb|EJX59763.1| GTP-binding protein YchF [Enterococcus faecium P1986]
gi|402942715|gb|EJX61280.1| GTP-binding protein YchF [Enterococcus faecium R446]
gi|402948824|gb|EJX66926.1| GTP-binding protein YchF [Enterococcus faecium P1190]
gi|402952356|gb|EJX70178.1| GTP-binding protein YchF [Enterococcus faecium P1137]
gi|402954796|gb|EJX72383.1| GTP-binding protein YchF [Enterococcus faecium P1140]
gi|402962629|gb|EJX79549.1| GTP-binding protein YchF [Enterococcus faecium ERV99]
gi|402967763|gb|EJX84289.1| GTP-binding protein YchF [Enterococcus faecium ERV69]
gi|402970166|gb|EJX86527.1| GTP-binding protein YchF [Enterococcus faecium ERV38]
gi|402973430|gb|EJX89557.1| GTP-binding protein YchF [Enterococcus faecium ERV168]
gi|402978121|gb|EJX93885.1| GTP-binding protein YchF [Enterococcus faecium ERV26]
gi|402981058|gb|EJX96612.1| GTP-binding protein YchF [Enterococcus faecium ERV165]
gi|402984005|gb|EJX99343.1| GTP-binding protein YchF [Enterococcus faecium ERV161]
gi|402985329|gb|EJY00546.1| GTP-binding protein YchF [Enterococcus faecium ERV102]
gi|402992823|gb|EJY07490.1| GTP-binding protein YchF [Enterococcus faecium ERV1]
gi|402992952|gb|EJY07605.1| GTP-binding protein YchF [Enterococcus faecium E422]
gi|403000500|gb|EJY14617.1| GTP-binding protein YchF [Enterococcus faecium E417]
gi|403006356|gb|EJY20007.1| GTP-binding protein YchF [Enterococcus faecium C621]
gi|403007230|gb|EJY20820.1| GTP-binding protein YchF [Enterococcus faecium C1904]
gi|403007964|gb|EJY21499.1| GTP-binding protein YchF [Enterococcus faecium C497]
gi|403009216|gb|EJY22679.1| GTP-binding protein YchF [Enterococcus faecium 515]
gi|403012997|gb|EJY26147.1| GTP-binding protein YchF [Enterococcus faecium 513]
gi|403020076|gb|EJY32636.1| GTP-binding protein YchF [Enterococcus faecium 514]
gi|403022556|gb|EJY34913.1| GTP-binding protein YchF [Enterococcus faecium 510]
gi|403023292|gb|EJY35565.1| GTP-binding protein YchF [Enterococcus faecium 509]
gi|403028079|gb|EJY39920.1| GTP-binding protein YchF [Enterococcus faecium 511]
gi|403030598|gb|EJY42275.1| GTP-binding protein YchF [Enterococcus faecium 506]
gi|403036311|gb|EJY47662.1| GTP-binding protein YchF [Enterococcus faecium 505]
gi|403038073|gb|EJY49311.1| GTP-binding protein YchF [Enterococcus faecium 503]
Length = 370
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 5 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 64 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 124 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 180 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 239
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 240 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 299
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 300 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 349
>gi|385841055|ref|YP_005864379.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|300215176|gb|ADJ79592.1| GTP-binding protein, probable translation factor [Lactobacillus
salivarius CECT 5713]
Length = 366
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 252/350 (72%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV------AEFAVLQKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D
Sbjct: 174 EGKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSEYYQQVKRFAEDEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + +SA+ E E+ ELP +E+ E+L + GV ESGL LIR++Y LLGL T+FT+G KET
Sbjct: 234 SQALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRASYKLLGLATFFTAGGKET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G
Sbjct: 294 RAWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAG 343
>gi|227891376|ref|ZP_04009181.1| GTP-binding translation factor YchF [Lactobacillus salivarius ATCC
11741]
gi|417787692|ref|ZP_12435375.1| GTP-binding and nucleic acid-binding protein YchF [Lactobacillus
salivarius NIAS840]
gi|417809551|ref|ZP_12456232.1| GTP-binding translation factor YchF [Lactobacillus salivarius
GJ-24]
gi|418960795|ref|ZP_13512682.1| GTP-binding protein YchF [Lactobacillus salivarius SMXD51]
gi|227866765|gb|EEJ74186.1| GTP-binding translation factor YchF [Lactobacillus salivarius ATCC
11741]
gi|334307869|gb|EGL98855.1| GTP-binding and nucleic acid-binding protein YchF [Lactobacillus
salivarius NIAS840]
gi|335350475|gb|EGM51971.1| GTP-binding translation factor YchF [Lactobacillus salivarius
GJ-24]
gi|380344462|gb|EIA32808.1| GTP-binding protein YchF [Lactobacillus salivarius SMXD51]
Length = 366
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 252/350 (72%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV------AEFAVLQKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D
Sbjct: 174 EGKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSEYYQQVKKFAEDEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + +SA+ E E+ ELP +E+ E+L + GV ESGL LIR++Y LLGL T+FT+G KET
Sbjct: 234 SQALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRASYKLLGLATFFTAGGKET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G
Sbjct: 294 RAWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAG 343
>gi|407798251|ref|ZP_11145159.1| GTP-binding protein YchF [Oceaniovalibus guishaninsula JLT2003]
gi|407059687|gb|EKE45615.1| GTP-binding protein YchF [Oceaniovalibus guishaninsula JLT2003]
Length = 365
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 248/348 (71%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDRLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ VP + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED+DI HV+G+V
Sbjct: 61 SKQVVPTRMTFVDIAGLVKGASRGEGLGNQFLANIRECDAIAHVLRCFEDDDITHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D I EL+ +DL+ +E+R+ + +K + D ++ +E AA Q AL G
Sbjct: 121 DPVADAQTIETELMLADLESVERRLTNIVRKVRGGDKEAVQQERLLTAA----QAALEQG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PARSV ++D + + + L LLT KPI+YV NV+E D A N V +A +
Sbjct: 177 RPARSVPVDDEDGKAWRMLQLLTAKPILYVCNVSEDDAAT--GNALTERVRQMAVAEGAA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+ +LP++E E+LA +G+ E GL LIR+ Y+LLGL+TYFT G KE +A
Sbjct: 235 EVVISARIEEEIAQLPADEAAEFLAEMGLEEPGLDRLIRAGYALLGLQTYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI AG APQAAGVIH DFE+GFIR+ET+AYDDFVA G A A+E G
Sbjct: 295 WTIPAGTRAPQAAGVIHGDFERGFIRSETIAYDDFVALGGEAGAKEAG 342
>gi|375089992|ref|ZP_09736314.1| GTP-binding protein YchF [Facklamia languida CCUG 37842]
gi|374566278|gb|EHR37525.1| GTP-binding protein YchF [Facklamia languida CCUG 37842]
Length = 366
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL ++ +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDQRLDQIATIYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EF DIAG+VKGAS+GEGLGNKFL++IR+VD+I VVRCF+D++I HV GKV
Sbjct: 60 PQKTIPTTIEFTDIAGIVKGASKGEGLGNKFLANIRQVDAICHVVRCFDDSNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ I+KR+ ++ K K KD ++ AE L K+++AL +
Sbjct: 120 DPIDDIETINLELILADLETIDKRLTRVSKIAKTKDKEAV----AEYEVLIKLKEALENN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ A +V D + ++ L LLT K ++YVAN+ E ++ADP +NPH+ +V LAS +
Sbjct: 176 QMANAVDFYDEQLPYVRNLFLLTRKKMLYVANIGEEEVADPEANPHLAKVRELASQQGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA++E E+ EL +E+ +L G++ESGL LI+S Y LLGL TYFT+GEKE +A
Sbjct: 236 VVPVSARLEEEIAELDDDEKASFLEDYGMTESGLDRLIQSVYHLLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GM APQAAGVIHSDFE+GFIRAET++Y D + GS +A +E G HY
Sbjct: 296 WTFKQGMKAPQAAGVIHSDFERGFIRAETMSYQDLITYGSESAVKEAG-----HYRSEGK 350
Query: 414 SYKYFHWNSYMLRY 427
Y + + R+
Sbjct: 351 EYLVKDGDIMLFRF 364
>gi|423388238|ref|ZP_17365464.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-3]
gi|401643426|gb|EJS61123.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-3]
Length = 366
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E+ L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EQEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E++EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEISELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|410945054|ref|ZP_11376795.1| GTP-binding protein YchF [Gluconobacter frateurii NBRC 101659]
gi|414341964|ref|YP_006983485.1| ychF [Gluconobacter oxydans H24]
gi|411027299|gb|AFW00554.1| ychF [Gluconobacter oxydans H24]
gi|453328672|dbj|GAC89100.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
thailandicus NBRC 3255]
Length = 364
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 248/350 (70%), Gaps = 12/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPN G VAVPDPRL +L + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNTGRVAVPDPRLDILVKIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IRE D+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKEIPTSLEFVDIAGLVRGASKGEGLGNQFLANIRETDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D D+I EL+ +DL+ +EKR ++K +G +++Q++L+ +E + AL
Sbjct: 121 DPVRDADIIETELMLADLESLEKRQINLQKRARGNDREAQAQLE------LMEPLIAALR 174
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGKPAR+ E ++ + L LLT KP++YV NV E+ A N H V A +
Sbjct: 175 DGKPARTAVPKGQEEEAAR-LQLLTTKPVLYVCNVEEASAAT--GNAHSEAVRKRAEEEG 231
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA +EAE+++LP E+R E+L LG+S+SGL +I + Y LLGLRTYFT G KE
Sbjct: 232 AGVVIVSAAIEAEVSQLPQEDRTEFLEGLGLSDSGLDRVIAAGYRLLGLRTYFTVGPKEA 291
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI AG APQAA VIH+DFE+GFI ETVA+DD+VA A A+E G
Sbjct: 292 RAWTITAGTKAPQAAAVIHNDFERGFIACETVAFDDYVACNGEAGAKEAG 341
>gi|288574497|ref|ZP_06392854.1| GTP-binding protein YchF [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570238|gb|EFC91795.1| GTP-binding protein YchF [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 363
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 251/347 (72%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+A+N+PFCTIEPNVG+V+VPD RL VLS + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITSAG-AEASNYPFCTIEPNVGVVSVPDERLSVLSKMFNSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA+VEF DIAGLV+GAS+GEGLGN FLSHIREV++I+ VVRCFED++IVHV+G VDP
Sbjct: 60 KITPATVEFFDIAGLVRGASKGEGLGNTFLSHIREVNAIVHVVRCFEDDNIVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I LELV SDL+ +E+ K ++ D L+ E K+++ L GK
Sbjct: 120 IRDIETIELELVLSDLEMLERHKTKTERNARNDKS--LRPYLELVG--KVKENLEAGKMV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ L D ER ++ L LLT KP+IYVANV+E D++D N HV + A VT
Sbjct: 176 RAMDLTDDERKELRGLGLLTDKPVIYVANVSEDDVSDSEGNVHVKSLKEYADRFDCEVVT 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
I A++EAE+ ELP EE+ E+LA LG++ESGL L+R+ Y LLGL ++ T+GEKE++AWTI
Sbjct: 236 ICARIEAEVAELPEEEKGEFLAELGLAESGLDRLVRAGYRLLGLISFLTAGEKESRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IH+DFE+GFI+A+ VAYD + GSLA A+ GLV
Sbjct: 296 KRGYRAPQAAGTIHTDFERGFIKAQVVAYDALIRCGSLAEAKAGGLV 342
>gi|425057766|ref|ZP_18461169.1| GTP-binding protein YchF [Enterococcus faecium 504]
gi|403039875|gb|EJY50990.1| GTP-binding protein YchF [Enterococcus faecium 504]
Length = 370
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PN+G+V VPD RL L+ L
Sbjct: 5 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNIGMVEVPDWRLQRLTELVH 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 64 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 124 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 180 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 239
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 240 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 299
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 300 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 349
>gi|389818767|ref|ZP_10208942.1| GTP-dependent nucleic acid-binding protein [Planococcus antarcticus
DSM 14505]
gi|388463677|gb|EIM06024.1| GTP-dependent nucleic acid-binding protein [Planococcus antarcticus
DSM 14505]
Length = 366
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/352 (56%), Positives = 260/352 (73%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++VINLELV +D++ IEKR+ KL K K KD+ AE+ L K+++A
Sbjct: 120 DPISDIEVINLELVLADMESIEKRIARAAKLVKQKDKDAV------AEEPVLMKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G ARS+ + E K L LLT+KP++YVANV+E ++AD +N +V +V A+
Sbjct: 174 NGDLARSIEFTEDELRIAKGLNLLTLKPMLYVANVSEDEIADADNNEYVQKVREFAAKDN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E E+ EL EE+ +L LG+ ESGL L++++Y+LLGL TYFT+G +E
Sbjct: 234 ADVIVICAKIEEEMAELEDEEKEMFLEELGIKESGLDQLVKASYNLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT + GM APQ AGVIHSDFE+GFIRAETVAYD+ V GS+AAA+E G V
Sbjct: 294 RAWTFKKGMKAPQCAGVIHSDFERGFIRAETVAYDELVETGSMAAAKEAGKV 345
>gi|293553535|ref|ZP_06674162.1| GTP-binding protein YchF [Enterococcus faecium E1039]
gi|430834935|ref|ZP_19452937.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0679]
gi|430839236|ref|ZP_19457177.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0688]
gi|430859070|ref|ZP_19476688.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1552]
gi|291602290|gb|EFF32515.1| GTP-binding protein YchF [Enterococcus faecium E1039]
gi|430485004|gb|ELA61951.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0679]
gi|430490694|gb|ELA67190.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0688]
gi|430544589|gb|ELA84618.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1552]
Length = 366
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PN+G+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNIGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|392988251|ref|YP_006486844.1| GTP-binding protein YchF [Enterococcus hirae ATCC 9790]
gi|392335671|gb|AFM69953.1| GTP-binding protein YchF [Enterococcus hirae ATCC 9790]
Length = 366
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLADIDTINLELVLADLESITKRYTRVAKIAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARS+ D E+ +K L LLT KPI+YVANVAE ++AD +N +V V N A++ +
Sbjct: 176 RSARSIEFTDEEQKIVKSLFLLTTKPILYVANVAEDEVADSDTNHYVQAVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|262375419|ref|ZP_06068652.1| translation-associated GTPase [Acinetobacter lwoffii SH145]
gi|262309673|gb|EEY90803.1| translation-associated GTPase [Acinetobacter lwoffii SH145]
Length = 367
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/377 (51%), Positives = 256/377 (67%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P S+EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG++
Sbjct: 64 PQRVIPTSMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGRI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GK
Sbjct: 124 DPLDDIATINTELALADLDAVAKAITRLTKSAKGGDKEAL---ATKAVLEKIQPLLDEGK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 181 PARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVRKLAAEENAIV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E +AW
Sbjct: 238 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYLLLGLQTYFTAGVQEVRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE +AYDDFV A A+E G W L
Sbjct: 298 TVKIGATAPQAAGVIHTDFEKGFIRAECIAYDDFVQYNGEAGAKEAG--KW-----RLEG 350
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 351 KTYIVQDGDVLHFRFNV 367
>gi|404493643|ref|YP_006717749.1| GTP-binding protein YchF [Pelobacter carbinolicus DSM 2380]
gi|77545679|gb|ABA89241.1| GTP-dependent translational factor YchF, putative [Pelobacter
carbinolicus DSM 2380]
Length = 364
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 255/349 (73%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKST+FNA+ G A++AN+PFCTIEPNVG+V+VPDPRL VL+ + +
Sbjct: 1 MGFKCGIVGLPNVGKSTIFNAITSAG-AESANYPFCTIEPNVGVVSVPDPRLDVLADIVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV+GASQGEGLGN+FL HIR+VD+I +VRCF+D+++VHV+G V
Sbjct: 60 PQRVLPTTIEFVDIAGLVRGASQGEGLGNQFLGHIRQVDAIANIVRCFDDDNVVHVDGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++VI EL +DLD +EKR+ +++K + L A++ L ++++ L GK
Sbjct: 120 DPMRDIEVIQTELNLADLDTVEKRLFRIQKQAKSGDKDML---AQQEVLLRVREVLDAGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS L+ ++ I L L+T KP++YVANVAE DL G +PHV V A++ +
Sbjct: 177 PARSAGLSYEDQRLISDLHLITAKPVLYVANVAEDDL--EGEHPHVARVREYAAEEGAEV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I ++E+E+ EL +E+ E+L LG+ SGL +I++ Y LLGL TYFT+G +E +AW
Sbjct: 235 VAICGKIESEIAELEGDEKQEFLQELGLGSSGLDRMIQAGYQLLGLITYFTAGVQEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
T+ G APQAAGVIH+DFEKGFIRAE +AYDDFVA + A+EKGL+
Sbjct: 295 TVHKGDRAPQAAGVIHTDFEKGFIRAEVIAYDDFVACRGESGAKEKGLL 343
>gi|430823198|ref|ZP_19441770.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0120]
gi|430866231|ref|ZP_19481508.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1574]
gi|431743892|ref|ZP_19532765.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2071]
gi|430442296|gb|ELA52341.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0120]
gi|430551459|gb|ELA91210.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1574]
gi|430605955|gb|ELB43327.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2071]
Length = 366
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEDLGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|409911214|ref|YP_006889679.1| GTP-dependent translational factor YchF [Geobacter sulfurreducens
KN400]
gi|298504780|gb|ADI83503.1| GTP-dependent translational factor YchF, putative [Geobacter
sulfurreducens KN400]
Length = 364
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 256/349 (73%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDVRLDRLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGASQGEGLGN+FL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+D+I EL +DLD ++K++++++K +AK +LKE++E A +++ AL G
Sbjct: 120 DPLRDIDIIQTELALADLDSVDKKLQRVEK-QAKSGDKRLKEESEFYA--RLKAALEQGI 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR V + D E ++ L LLT KP++YVANVAE DL G++P V +V LA +
Sbjct: 177 PARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDL--DGAHPAVAKVRELAEREGARV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTI ++EAE+ EL +E+ +L +G++ESGL LIR Y LLGL TYFT+G+KE +AW
Sbjct: 235 VTICGRIEAEIAELEGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAGVIH+DFEKGFIRAE +AY D++AAG A+EKGL+
Sbjct: 295 TIPTGTKAPQAAGVIHTDFEKGFIRAEVIAYADYIAAGGETGAKEKGLM 343
>gi|90962563|ref|YP_536479.1| GTP-dependent nucleic acid-binding protein EngD [Lactobacillus
salivarius UCC118]
gi|90821757|gb|ABE00396.1| GTP-binding protein, probable translation factor [Lactobacillus
salivarius UCC118]
Length = 366
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 251/350 (71%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV------AEFAVLQKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D
Sbjct: 174 EGKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSKYYQQVKKFAEDEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + +SA+ E E+ ELP +E+ E+L + GV ESGL LIR +Y LLGL T+FT+G KET
Sbjct: 234 SQALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRVSYKLLGLATFFTAGGKET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G
Sbjct: 294 RAWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAG 343
>gi|313895727|ref|ZP_07829283.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975853|gb|EFR41312.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 374
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/349 (56%), Positives = 253/349 (72%), Gaps = 5/349 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL L+ L S
Sbjct: 9 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLTALTDLYHS 67
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 68 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 127
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
P D+D+I EL +DL+ +EKR K+ K S+ AE AALE+++ L G+P
Sbjct: 128 PLRDIDIIETELCLADLEAVEKRAAKVTKLLKSGSKEAK---AEAAALERLKSVLDAGRP 184
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
AR L++ E+ ++ L LLT KPI+YVANV E + A + NPHV V + A+ +
Sbjct: 185 AREAELSEEEQSLLRDLNLLTRKPILYVANVGEDEAATADAENPHVQAVQDYAARTGAQV 244
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+SA++E E+ EL +EE +L LG+ ESGL LI ++LLGL+T+ T+GE E +AW
Sbjct: 245 VTVSARLEEEIAELDAEEAAVFLEDLGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAW 304
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G TAP+AAG IH+DFE+GFIRAE V+YDD V+ GS+AAAR+KGLV
Sbjct: 305 TITRGTTAPKAAGKIHTDFERGFIRAEIVSYDDLVSLGSVAAARDKGLV 353
>gi|229065134|ref|ZP_04200427.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH603]
gi|229136300|ref|ZP_04265047.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST196]
gi|229170178|ref|ZP_04297864.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH621]
gi|228613279|gb|EEK70418.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH621]
gi|228647172|gb|EEL03260.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST196]
gi|228716163|gb|EEL67882.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH603]
Length = 369
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 257/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 348
>gi|399517301|ref|ZP_10758854.1| GTP-binding and nucleic acid-binding protein YchF [Leuconostoc
pseudomesenteroides 4882]
gi|398647799|emb|CCJ66881.1| GTP-binding and nucleic acid-binding protein YchF [Leuconostoc
pseudomesenteroides 4882]
Length = 366
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 251/348 (72%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDERLARIQAIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKVIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++ IN EL+ +DL+ ++KR K+ + K D +K AE A LEK++ AL G
Sbjct: 120 NPLDDIETINTELILADLETVDKRYAKVARAAKGSDKAAK----AEFAVLEKLKPALEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ AR+V +D E+ +K L LLT KP++YVAN+AE D+ADP S+ + NE+ A+ +
Sbjct: 176 QSARTVAFSDDEQKIVKGLFLLTTKPVLYVANLAEDDMADPESSKYFNEIKTFANSEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ ELP +ER E+L GV E GL L R+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEEIAELPDDERAEFLEMAGVDEPGLNKLTRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT RAG APQAAGVIHSDFE+GFIRAET+++DD A GS+ A +E G
Sbjct: 296 WTFRAGAKAPQAAGVIHSDFERGFIRAETISFDDLDALGSVKAVKEAG 343
>gi|336419594|ref|ZP_08599852.1| GTP-binding protein YchF [Fusobacterium sp. 11_3_2]
gi|336163468|gb|EGN66392.1| GTP-binding protein YchF [Fusobacterium sp. 11_3_2]
Length = 364
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 264/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+VANVAE DLA N +V V A + S V +S
Sbjct: 181 LNLTDDEKQILKNYQLLTLKPMIFVANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|451947232|ref|YP_007467827.1| GTP-binding protein YchF [Desulfocapsa sulfexigens DSM 10523]
gi|451906580|gb|AGF78174.1| GTP-binding protein YchF [Desulfocapsa sulfexigens DSM 10523]
Length = 365
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 250/350 (71%), Gaps = 7/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ G A N+PFCTIEPNVGIV VPD RL VL+ ++
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAAG-IDAENYPFCTIEPNVGIVPVPDKRLDVLAEMAN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+++ V +EFVDIAGLVKGASQGEGLGN+FL HIR+VD+++ V+RCFED +IVHV+G +
Sbjct: 60 TRRKVATQMEFVDIAGLVKGASQGEGLGNQFLGHIRQVDALVHVIRCFEDENIVHVDGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D +VI +EL+ +DLD +EKR+ K + AK KLK A+ LE+++ L G
Sbjct: 120 DPVRDKEVITMELILADLDTVEKRLRKAQS-LAKSGDKKLK--AQAVFLERLRDVLDSGA 176
Query: 235 PARSVT-LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
AR++ D E++ +K++CLLT KP++YVANV E D+ D N HV + LA + G
Sbjct: 177 SARTLEPEGDMEKEMMKEMCLLTDKPVLYVANVKEEDVTD--GNEHVRALERLAQEDGDG 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I+ +E EL++L EER E+LA +G+ E GL LI + Y LLGL TYFT GEKET+A
Sbjct: 235 VVIIAGSIEQELSQLDQEERQEFLADMGMEEPGLNRLIAAGYKLLGLITYFTVGEKETRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G AP AAG IHSDF++GFIRAET++YDDFVA + A+EKG++
Sbjct: 295 WTISRGTKAPGAAGKIHSDFQRGFIRAETISYDDFVACDGESGAKEKGVM 344
>gi|148265699|ref|YP_001232405.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter
uraniireducens Rf4]
gi|146399199|gb|ABQ27832.1| GTP-binding protein YchF [Geobacter uraniireducens Rf4]
Length = 364
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/377 (52%), Positives = 269/377 (71%), Gaps = 13/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD R+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDERMKQLAVIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAIVHVVRCFEDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD++VI EL +DLD +EK++ +++K AK K+K++A+ ++++ A+ GK
Sbjct: 120 DPVSDIEVIKTELGLADLDSVEKKLVRVEK-LAKSGDKKIKDEAD--FYQRLKSAVEQGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R V ND E+ +++L LLT KP++YVANVAE DL G++P V V LA +
Sbjct: 177 SPRDVVQNDDEKLLLRELHLLTDKPVLYVANVAEDDL--EGTHPFVGRVRELAVAEGAKL 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTI ++EAE++EL EE+ +LA +G+ ESGL LIR+ Y LLGL TYFT+G KE +AW
Sbjct: 235 VTICGRIEAEISELAGEEKQAFLAEMGLKESGLDRLIRTGYELLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
TI G APQAAGVIHSDFEKGFIRAE +A++DF+AAG A A+EKGL+ L
Sbjct: 295 TITRGTKAPQAAGVIHSDFEKGFIRAEVIAFNDFIAAGGEAGAKEKGLM-------RLEG 347
Query: 415 YKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 KEYVVQDGDVMHFRFNV 364
>gi|222152191|ref|YP_002561351.1| GTP-binding protein [Macrococcus caseolyticus JCSC5402]
gi|222121320|dbj|BAH18655.1| GTP-binding protein [Macrococcus caseolyticus JCSC5402]
Length = 366
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/352 (54%), Positives = 252/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR FED +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
+P D++VIN+ELV +DL+ +EKR ++K+ K K KD+ AE+A L +++ L
Sbjct: 120 NPVDDIEVINMELVLADLESVEKRYARVQKMAKQKDKDAM------AEEAVLAIVKETLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP RS+ + + +K + LLT KP++YVANV+E DL N H+ + A
Sbjct: 174 AEKPVRSIEFSPEQAKLVKNMHLLTAKPMLYVANVSEDDLISGEENEHLQAIKAYAEAEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + ISA++E EL L E++ EYL LG+ E+GL LIR++Y LLGL TYFT+G +E
Sbjct: 234 SDVIVISAKIEEELATLEDEDKAEYLEDLGIEEAGLDKLIRASYHLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT + GMTAPQ AG+IH+DFE+GFIRAETV+YDD + ++ A+E G V
Sbjct: 294 RAWTFKKGMTAPQCAGIIHTDFERGFIRAETVSYDDLIEYNGMSGAKEAGKV 345
>gi|168830300|gb|ACA34397.1| YchF [uncultured bacterium pTW2]
Length = 363
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/372 (50%), Positives = 262/372 (70%), Gaps = 15/372 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIQCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN ++
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DL+ ++K R E+ K KD++++++ L +++ L
Sbjct: 120 DPIADIETIDTELALADLESVDKALQRAERTAKTGDKDARARVE------VLARVRAGLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
GKPAR++ L+D +R +I+ L LLT+KP++YVANV E +D NPH++ V A
Sbjct: 174 AGKPARALGLSDEDRAAIRDLFLLTLKPVMYVANVLEDGFSD---NPHLDAVRARALGEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLEDEDRDAFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG--LVSWLHYH 409
+AWT++ G TAPQAA VIH+DFEKGFIRAET+ +DDF+ + AR+ G + Y
Sbjct: 291 RAWTVKGGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGESGARDAGRLRLEGKEYR 350
Query: 410 EHLASYKYFHWN 421
+F +N
Sbjct: 351 VQEGDVLHFRFN 362
>gi|39995770|ref|NP_951721.1| GTP-binding protein YchF [Geobacter sulfurreducens PCA]
gi|39982534|gb|AAR33994.1| GTP-dependent translational factor YchF, putative [Geobacter
sulfurreducens PCA]
Length = 364
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 256/349 (73%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDVRLDRLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGASQGEGLGN+FL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+D+I EL +DLD ++K++++++K +AK +LKE++E A +++ AL G
Sbjct: 120 DPLRDIDIIQTELALADLDSVDKKLQRVEK-QAKSGDKRLKEESEFYA--RLKAALEQGI 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR V + D E ++ L LLT KP++YVANVAE DL G++P V +V LA +
Sbjct: 177 PARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDL--DGAHPAVAKVRELAEREGARV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTI ++EAE+ EL +E+ +L +G++ESGL LIR Y LLGL TYFT+G+KE +AW
Sbjct: 235 VTICGRIEAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAGVIH+DFEKGFIRAE +AY D++AAG A+EKGL+
Sbjct: 295 TIPTGTKAPQAAGVIHTDFEKGFIRAEVIAYADYIAAGGETGAKEKGLM 343
>gi|402303023|ref|ZP_10822123.1| GTP-binding protein YchF [Selenomonas sp. FOBRC9]
gi|400379487|gb|EJP32327.1| GTP-binding protein YchF [Selenomonas sp. FOBRC9]
Length = 368
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/349 (57%), Positives = 250/349 (71%), Gaps = 5/349 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLTVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
P D+D+I EL +DL+ +EKR K+ K S+ AE AALE+++ L G+P
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRAAKVTKLLKSGSKEAK---AEAAALERLKSVLDAGRP 178
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGR 294
AR L++ E+ ++ L LLT KPI+YVANV E + A NPHV V A +
Sbjct: 179 AREAELSEEEQTLLRDLNLLTRKPILYVANVGEDEAATADAENPHVQTVKEYAGRTGAQV 238
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+SA++E E+ EL +EE +L LG+ ESGL LI ++LLGL+T+ T+GE E +AW
Sbjct: 239 VTVSARLEEEIAELDAEEAAVFLEDLGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAW 298
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G TAP+AAG IH+DFE+GFIRAE V+YDD V GS+AAAR+KGLV
Sbjct: 299 TITRGTTAPKAAGKIHTDFERGFIRAEIVSYDDLVVLGSVAAARDKGLV 347
>gi|85708580|ref|ZP_01039646.1| GTPase [Erythrobacter sp. NAP1]
gi|85690114|gb|EAQ30117.1| GTPase [Erythrobacter sp. NAP1]
Length = 366
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/349 (55%), Positives = 247/349 (70%), Gaps = 8/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL ++ ++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNVGQVAVPDERLDKIAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K + + FVDIAGLVKGASQGEGLGN+FL +IREVD+I+ V+RCFED+DI HV+ KV
Sbjct: 61 SAKVIATQLAFVDIAGLVKGASQGEGLGNQFLGNIREVDAIVHVLRCFEDDDIQHVSNKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D +V+ EL+ +DL+ +EKR+ K+ A D ++K+ ALE L DG
Sbjct: 121 DPIADAEVVETELMLADLESLEKRVSNAEKRATAGDKEAKIMASVLGQALE----LLKDG 176
Query: 234 KPARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR V D E + + KQ LLT KP++YV NVAE + A N V A +
Sbjct: 177 KPARLVEPKDVEEERVLKQAQLLTAKPVLYVCNVAEDEAAS--GNALSQAVFAKAEAEGA 234
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V +SA +EAEL E+P+E+R EYL SLG+ ESGL +IR+ Y+LLGL+T+FT+G KE++
Sbjct: 235 QAVVVSAAIEAELVEMPAEDRAEYLESLGLEESGLARVIRAGYTLLGLKTFFTAGPKESR 294
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWT G APQAAG IH+DFEKGFIRAET+AYDD++A G A A+E G
Sbjct: 295 AWTFPDGAKAPQAAGEIHTDFEKGFIRAETIAYDDYIALGGEAGAKEAG 343
>gi|228924220|ref|ZP_04087491.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|423583645|ref|ZP_17559756.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD014]
gi|423633677|ref|ZP_17609330.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD156]
gi|228835438|gb|EEM80808.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|401209705|gb|EJR16464.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD014]
gi|401282744|gb|EJR88642.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD156]
Length = 366
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVMDPSENKYVKMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYNLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|340754447|ref|ZP_08691201.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium sp.
2_1_31]
gi|422314888|ref|ZP_16396339.1| GTP-binding protein YchF [Fusobacterium periodonticum D10]
gi|229423956|gb|EEO39003.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium sp.
2_1_31]
gi|404593205|gb|EKA94803.1| GTP-binding protein YchF [Fusobacterium periodonticum D10]
Length = 364
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 268/373 (71%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLNALAQIINPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D +++HV+G+VDP SD
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDENVIHVSGQVDPISD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+D++ IEK +EK K +++K+KE E A L K+++ L + K ++
Sbjct: 125 IEVINTELIFADIETIEKAIEK----HEKLARNKIKESVELMAVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +S
Sbjct: 181 LDLTDEEKQVLKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDDESKKEFLETLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVL-------RLEGKEYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VHDGDLMEFLFNV 364
>gi|229014641|ref|ZP_04171755.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
DSM 2048]
gi|423416614|ref|ZP_17393703.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-1]
gi|228746652|gb|EEL96541.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
DSM 2048]
gi|401109998|gb|EJQ17914.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-1]
Length = 366
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|163943155|ref|YP_001648039.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
weihenstephanensis KBAB4]
gi|423369437|ref|ZP_17346868.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD142]
gi|423513074|ref|ZP_17489604.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-1]
gi|423520132|ref|ZP_17496613.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-4]
gi|163865352|gb|ABY46411.1| GTP-binding protein YchF [Bacillus weihenstephanensis KBAB4]
gi|401077874|gb|EJP86201.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD142]
gi|401156725|gb|EJQ64128.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-4]
gi|402446117|gb|EJV77980.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-1]
Length = 366
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|237745352|ref|ZP_04575833.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|229432581|gb|EEO42793.1| GTP-binding protein [Fusobacterium sp. 7_1]
Length = 364
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ LS + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELSKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|295398152|ref|ZP_06808201.1| GTP-binding protein YchF [Aerococcus viridans ATCC 11563]
gi|294973671|gb|EFG49449.1| GTP-binding protein YchF [Aerococcus viridans ATCC 11563]
Length = 364
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 252/348 (72%), Gaps = 8/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ ++ + +AAN+PF TI+PNVG+V VPD RL L+
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKS-QVEAANYPFATIDPNVGVVEVPDSRLQTLTEFYV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIIHVVRCFEDGNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ SDL+ + KR EK +K K+KD + + E AL K+++ L G
Sbjct: 120 DPADDIETINLELILSDLETVNKRYEKAVKMAKSKDHDAIV----EANALAKVKEVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR+VT + E+ I ++ LLT KPI+YVANV E D A N +V V +AS+ +
Sbjct: 176 KSARTVTFTEEEQPFIDRMFLLTTKPILYVANVNEDDAA--TGNDYVEIVRGIASEEDAE 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SAQ+E EL L E+R ++ LG+ SGL LI+ Y+LLGL TYFT+GE+E +A
Sbjct: 234 VVIVSAQIEEELASLDDEDREMFMEDLGMEVSGLDRLIQRAYTLLGLETYFTAGEQEVRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + GM APQAAGVIHSDFEKGFIRAET++Y+D + GS AA+E G
Sbjct: 294 WTFKKGMKAPQAAGVIHSDFEKGFIRAETLSYEDLLTYGSEKAAKEAG 341
>gi|410457454|ref|ZP_11311263.1| GTP-binding protein YchF [Bacillus bataviensis LMG 21833]
gi|409925152|gb|EKN62378.1| GTP-binding protein YchF [Bacillus bataviensis LMG 21833]
Length = 366
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/352 (56%), Positives = 255/352 (72%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++ INLEL+ +D++ +EKR+ EKL K K KD+ AE L ++ A
Sbjct: 120 DPIDDIETINLELILADMESVEKRISRVEKLAKQKDKDAA------AEFEVLAMLRDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR+V + + +K L LLT+KP++YVANV+E ++A+P N +V +V A
Sbjct: 174 AEKPARTVDFTEEQMKLVKGLHLLTIKPVLYVANVSEDEVANPSDNEYVQKVREFAKADN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + I A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E
Sbjct: 234 AEVIIICAKIEEEIAELEGEEKQMFLEELGIEESGLDQLIRAAYHLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R GM APQ AGVIHSDFE+GFIRAETV+YDD +AAGS AA+E G V
Sbjct: 294 RAWTFRKGMKAPQCAGVIHSDFERGFIRAETVSYDDLLAAGSHTAAKEAGKV 345
>gi|392961548|ref|ZP_10327005.1| GTP-binding protein YchF [Pelosinus fermentans DSM 17108]
gi|421055463|ref|ZP_15518426.1| GTP-binding protein YchF [Pelosinus fermentans B4]
gi|421061288|ref|ZP_15523639.1| GTP-binding protein YchF [Pelosinus fermentans B3]
gi|421064203|ref|ZP_15526102.1| GTP-binding protein YchF [Pelosinus fermentans A12]
gi|421072345|ref|ZP_15533456.1| GTP-binding protein YchF [Pelosinus fermentans A11]
gi|392439846|gb|EIW17547.1| GTP-binding protein YchF [Pelosinus fermentans B4]
gi|392445982|gb|EIW23284.1| GTP-binding protein YchF [Pelosinus fermentans A11]
gi|392450674|gb|EIW27704.1| GTP-binding protein YchF [Pelosinus fermentans B3]
gi|392453666|gb|EIW30534.1| GTP-binding protein YchF [Pelosinus fermentans DSM 17108]
gi|392461523|gb|EIW37708.1| GTP-binding protein YchF [Pelosinus fermentans A12]
Length = 368
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 265/373 (71%), Gaps = 10/373 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDERLPHLVEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K+++ +P ++ FVDIAGLVKGAS+GEGLGNKFL+HIR+VD++ QVVRCFED +I HV G
Sbjct: 60 YKTKRCIPTAMRFVDIAGLVKGASKGEGLGNKFLAHIRQVDAVAQVVRCFEDENITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231
++P D+++IN EL +DLD +EKRME+++K K D ++ E A L KI++ L
Sbjct: 120 ALNPLRDIEIINTELCLADLDTLEKRMERVQKLIKTGDKKAP----NEMAVLVKIKELLE 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
PAR V + + E I L L+T+KP++++ANV+E ++A+ N +V V A +
Sbjct: 176 QALPARRVDMTEDEAGLIGDLNLMTLKPVLFIANVSEDEVANAEDNEYVKIVKKYAVEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + +SA+VE+E+ ELP+E+ E+LA LG+ ESGL LI+++Y LLGL T+ T+GE+E
Sbjct: 236 AEVIAVSAKVESEIAELPAEDAKEFLAELGLKESGLDKLIKASYKLLGLVTFLTAGEQEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWTI+ G APQA G IHSD E+GFIRAE V+Y+D V GS AAREKGLV L E+
Sbjct: 296 RAWTIKKGTKAPQAGGKIHSDIERGFIRAEIVSYNDLVLTGSSNAAREKGLVR-LEGKEY 354
Query: 412 L---ASYKYFHWN 421
+ YF +N
Sbjct: 355 IMQDGDVTYFRFN 367
>gi|421075158|ref|ZP_15536173.1| GTP-binding protein YchF [Pelosinus fermentans JBW45]
gi|392526600|gb|EIW49711.1| GTP-binding protein YchF [Pelosinus fermentans JBW45]
Length = 368
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/372 (51%), Positives = 262/372 (70%), Gaps = 8/372 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDERLPHLVEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K+++ +P ++ FVDIAGLVKGAS+GEGLGNKFL+HIR+VD++ QVVRCFED +I HV G
Sbjct: 60 YKTKRCIPTAMRFVDIAGLVKGASKGEGLGNKFLAHIRQVDAVAQVVRCFEDENITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231
++P D+++IN EL +DLD +EKRME+++K K D ++ E A L KI++ L
Sbjct: 120 ALNPLRDIEIINTELCLADLDTLEKRMERVQKLIKTGDKKAP----NEMAVLVKIKELLE 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
PAR + + E I L L+T+KP++++ANV+E ++A+ N +V V A +
Sbjct: 176 QALPARRANMTEDEAGLIGDLNLMTLKPVLFIANVSEEEVANAEDNEYVKIVRKYAVEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + +SA+VE+E+ ELP+E+ E+LA LG+SESGL LI+++Y LLGL T+ T+GE+E
Sbjct: 236 AEVIAVSAKVESEIAELPAEDAKEFLAELGLSESGLDKLIKASYKLLGLVTFLTAGEQEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYH 409
+AWTI+ G APQA G IHSD E+GFIRAE V+Y+D V GS AAREKGLV Y
Sbjct: 296 RAWTIKKGTKAPQAGGKIHSDIERGFIRAEIVSYNDLVLTGSSNAAREKGLVRLEGKEYV 355
Query: 410 EHLASYKYFHWN 421
YF +N
Sbjct: 356 MQDGDVTYFRFN 367
>gi|402835770|ref|ZP_10884328.1| GTP-binding protein YchF [Mogibacterium sp. CM50]
gi|402273280|gb|EJU22485.1| GTP-binding protein YchF [Mogibacterium sp. CM50]
Length = 363
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 253/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ + K++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVTVPDKRLEVLTDIYKAR 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + ++EF DIAGLVKGAS+GEGLGNKFL HIREV +I+ VVRCF +++IVHVNG VDP
Sbjct: 60 KTIYTTIEFCDIAGLVKGASKGEGLGNKFLGHIREVSAIVHVVRCFANDNIVHVNGHVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ IN EL+F+DL+ +E+ + KL K D + D LE+++ L GK A
Sbjct: 120 LDDIETINTELIFADLEVLERAIAKLTKSMKADKSLAKQLD----LLERVKAWLETGKSA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ LN E + I + LLT KP+IYVANV+E D++ N HV +V A+ +G V
Sbjct: 176 RAMELNKEEGEIISGMDLLTFKPVIYVANVSEDDVSSD-DNKHVQKVSEFAASEGAGCVK 234
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
I A++EAE+ EL +EER +L LG+SESGL LI+++YSLL L +Y T+GE E +AWTI
Sbjct: 235 ICAEIEAEMAELDAEEREMFLEDLGISESGLDQLIKASYSLLNLISYLTAGEPEVRAWTI 294
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFV-AAGSLAAAREKGLV 403
G APQAAG IH+DFEKGFIRAET+AY+ + GSLA ARE+GL+
Sbjct: 295 TKGTKAPQAAGKIHTDFEKGFIRAETIAYNKLIECGGSLAKAREQGLI 342
>gi|301301108|ref|ZP_07207265.1| GTP-binding protein YchF [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851237|gb|EFK78964.1| GTP-binding protein YchF [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 366
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 251/350 (71%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV------AEFAVLQKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D
Sbjct: 174 EGKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSEYYQQVKKFAEDEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + +SA+ E E+ ELP +E+ E+L + GV ESGL LIR++Y LLGL T+FT+G KET
Sbjct: 234 SQALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRASYKLLGLATFFTAGGKET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ +E G
Sbjct: 294 RAWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQDVKEAG 343
>gi|220928042|ref|YP_002504951.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
cellulolyticum H10]
gi|219998370|gb|ACL74971.1| GTP-binding protein YchF [Clostridium cellulolyticum H10]
Length = 365
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/368 (51%), Positives = 264/368 (71%), Gaps = 8/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL L+ +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDTLTKMYNPD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++IVHV+G + P
Sbjct: 60 KTTPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
K D++ INLEL+FSDL+ I++R+++ KK K+ D + ++ E E I+ L GKP
Sbjct: 120 KRDIETINLELIFSDLEMIDRRIDRTKKLLKSGDKKFQI----EMELYESIKAHLESGKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
RS++ + ++ ++QL L+T+KP++Y ANV+E DL+ SN + E+ +A++ S +
Sbjct: 176 VRSMSFDQEQQQLVEQLFLITLKPVLYAANVSEEDLSSLDSNRFLAELKEVAAEENSEVM 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E E+ +L EE+ ++L ++G+ ESGL LI+++Y +LGL +Y T+G++E +AWT
Sbjct: 236 VICAKIEEEIAQLEDEEKEDFLEAMGLEESGLDKLIKASYKILGLISYLTAGQQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEHLA 413
I G APQAAG IHSDFE+GFIRAE VAYDD + GS A+EKGLV Y H
Sbjct: 296 ITNGTKAPQAAGKIHSDFERGFIRAEIVAYDDLINCGSYTVAKEKGLVRSEGKEYVMHDG 355
Query: 414 SYKYFHWN 421
F +N
Sbjct: 356 DVTLFRFN 363
>gi|257866238|ref|ZP_05645891.1| translation-associated GTPase [Enterococcus casseliflavus EC30]
gi|257873248|ref|ZP_05652901.1| translation-associated GTPase [Enterococcus casseliflavus EC10]
gi|257875873|ref|ZP_05655526.1| translation-associated GTPase [Enterococcus casseliflavus EC20]
gi|325567662|ref|ZP_08144329.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
casseliflavus ATCC 12755]
gi|420261817|ref|ZP_14764461.1| translation-associated GTPase [Enterococcus sp. C1]
gi|257800196|gb|EEV29224.1| translation-associated GTPase [Enterococcus casseliflavus EC30]
gi|257807412|gb|EEV36234.1| translation-associated GTPase [Enterococcus casseliflavus EC10]
gi|257810039|gb|EEV38859.1| translation-associated GTPase [Enterococcus casseliflavus EC20]
gi|325159095|gb|EGC71241.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
casseliflavus ATCC 12755]
gi|394771751|gb|EJF51512.1| translation-associated GTPase [Enterococcus sp. C1]
Length = 366
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D+D INLELV +DL+ + KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLADIDTINLELVLADLESVNKRYTRVAKIAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARS+ D E+ +K L LLT KP++YVANVAE D+AD +N +VN+V A+ +
Sbjct: 176 ISARSIEFTDEEQRIVKSLFLLTTKPVLYVANVAEEDVADYETNDYVNKVKEFAASENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVISARAEEEIAELEEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G+ APQAAG+IH+DFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFRKGIKAPQAAGIIHTDFERGFIRAETVSFEDLNQYGTMQAAKEAGRV 345
>gi|430826517|ref|ZP_19444699.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0164]
gi|430828696|ref|ZP_19446813.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0269]
gi|431213212|ref|ZP_19501077.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1620]
gi|431747309|ref|ZP_19536107.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2134]
gi|431764831|ref|ZP_19553359.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4215]
gi|430445030|gb|ELA54820.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0164]
gi|430483236|gb|ELA60330.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0269]
gi|430570465|gb|ELB09425.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1620]
gi|430606677|gb|ELB44022.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2134]
gi|430629919|gb|ELB66301.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4215]
Length = 366
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|293608337|ref|ZP_06690640.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427422875|ref|ZP_18913049.1| GTP-binding protein YchF [Acinetobacter baumannii WC-136]
gi|292828910|gb|EFF87272.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425700510|gb|EKU70093.1| GTP-binding protein YchF [Acinetobacter baumannii WC-136]
Length = 363
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LASD
Sbjct: 174 EGKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLASDEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 340
>gi|406888353|gb|EKD34863.1| hypothetical protein ACD_75C02158G0002 [uncultured bacterium]
Length = 366
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 256/350 (73%), Gaps = 12/350 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+A+N+PFCTIEPN+GIV VPD RL VL+ L S
Sbjct: 1 MKIGIVGLPNVGKSTLFNALTKAG-AEASNYPFCTIEPNIGIVRVPDERLDVLAKLGTSN 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +P ++EFVDIAGLVKGAS+GEGLGN FL+HIR V++I VVRCF+D++I HV+G +DP
Sbjct: 60 KIIPTTIEFVDIAGLVKGASKGEGLGNMFLAHIRSVEAIAHVVRCFDDDNITHVHGGIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
D + INLEL+ +DL+ +EKR+ EK +G+ KDS KL + L KI+ AL
Sbjct: 120 VGDAETINLELILADLELVEKRIFAEEKKARGQDKDSIIKL------SGLLKIKAALEAE 173
Query: 234 KPARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQ 291
KPAR+ L+ E+ I +++ LLT K +IYVANV+E DL G+ NP+V ++ A
Sbjct: 174 KPARAARLDKQEKVLIDREMQLLTGKQVIYVANVSEDDLGTEGAGNPYVQKLKAFADSHG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
G V +SA++EAEL+E+ EE +LA LG+ ESGL L R YSLL L ++ T+G+KET
Sbjct: 234 DGLVCVSAKIEAELSEMDEEEAQVFLAELGLKESGLARLAREAYSLLDLISFLTTGQKET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI+ G APQAAGVIH+DFEK FIRAE V YDD VAAGS +AARE+G
Sbjct: 294 RAWTIKQGTRAPQAAGVIHTDFEKHFIRAEVVPYDDLVAAGSWSAARERG 343
>gi|381210650|ref|ZP_09917721.1| GTP-binding protein YchF [Lentibacillus sp. Grbi]
Length = 366
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 261/349 (74%), Gaps = 4/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ LS L K
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGIVEVPDNRLNKLSELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I+QVVRCF++++I HV+GK+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAIVQVVRCFQNDNITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ INLEL+ +DL+ + KR+++++K + + + AE LEK+++ L
Sbjct: 120 DPVDDIETINLELILADLETVNKRLQRVEKMARQKEKEAV---AEYNLLEKLKEGLEAEL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R++ ++ + +K L LLT KP +Y ANV+E D+ADP +N V V A++ +
Sbjct: 177 PVRALEFSEDQWKLVKGLHLLTSKPALYAANVSEDDVADPEANEAVQRVREYAANENAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + A++E E+ EL +EE+ +L LG++E+GL LI+++Y+LLGL TYFT+GE E +AW
Sbjct: 237 IVVCAKIEEEVAELDAEEKEMFLDDLGIAEAGLDQLIKASYNLLGLGTYFTAGEPEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
T G+ APQAAG+IH+DFE+GFIRAETV+Y+D + AG+++ AR+ G V
Sbjct: 297 TFPKGIKAPQAAGIIHTDFERGFIRAETVSYEDLMEAGTMSKARDNGRV 345
>gi|406669700|ref|ZP_11076965.1| GTP-binding protein YchF [Facklamia ignava CCUG 37419]
gi|405582750|gb|EKB56742.1| GTP-binding protein YchF [Facklamia ignava CCUG 37419]
Length = 366
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 254/349 (72%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL +S +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDRRLQAISSVIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P + EF DIAG+VKGAS+GEGLGNKFLS+IREVD+I VVRCF+D +I HV+G+V
Sbjct: 60 PQKIIPTTFEFTDIAGIVKGASKGEGLGNKFLSNIREVDAICHVVRCFDDENITHVDGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ I+KR+ +++K + KD ++ + E L +++ AL
Sbjct: 120 DPIEDIETINLELILADLESIDKRITRVEKLARLKDKEAVM----ELNILTRLKDALEHN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ A SV N E ++ L LLT KP++YVAN+ E D+A+P NP++++V LA +
Sbjct: 176 QMANSVEFNKEEEPIVRGLFLLTRKPMLYVANIGEEDVANPTDNPYLSQVQALAESQGAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E E+ L EE+ +L + ESGL LI++ YSLLGL TYFT+GEKE +A
Sbjct: 236 VVPVCASLEEEIAVLDDEEKALFLEEYDMEESGLDKLIQAAYSLLGLGTYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
WT + GM APQAAGVIH+DFE+GFIRAETV++DD +A+GS+A A+E GL
Sbjct: 296 WTFKKGMKAPQAAGVIHTDFERGFIRAETVSFDDLMASGSMAKAKENGL 344
>gi|384426744|ref|YP_005636101.1| GTP-binding protein YchF [Xanthomonas campestris pv. raphani 756C]
gi|341935844|gb|AEL05983.1| GTP-binding protein YchF [Xanthomonas campestris pv. raphani 756C]
Length = 363
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNELAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHADIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RS L++ E+ ++ L LLT+KP++Y+ NV E + NPH++ V A+
Sbjct: 174 DGKAGRSAGLDEEEKALVRDLFLLTLKPVMYICNVLEDGFEN---NPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+A+DDF+ + AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAFDDFIKYRGESGARDAG 340
>gi|294666033|ref|ZP_06731295.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292604225|gb|EFF47614.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 363
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD + K R E+ KG KD+ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVGKALNRAERSAKGGDKDAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+
Sbjct: 174 DGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +L LG+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDSFLTDLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAG 340
>gi|160934893|ref|ZP_02082279.1| hypothetical protein CLOLEP_03768 [Clostridium leptum DSM 753]
gi|156866346|gb|EDO59718.1| GTP-binding protein YchF [Clostridium leptum DSM 753]
Length = 364
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 252/348 (72%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N AQ+AN+PFCTIEPNVG+VAVPDPRL L+ L
Sbjct: 1 MKLGIVGLPNVGKSTLFNAIT-NAGAQSANYPFCTIEPNVGVVAVPDPRLDKLAELYHPV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFE++DIVHV G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFENDDIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+ SD++ +++RM+K K D K E ++++ L G+PA
Sbjct: 120 ARDIETINLELILSDIEMLDRRMDKTLKMIKADK----KYQGEYDFFQRVKDTLNQGRPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 295
RSV N+ E + + + LLT KPIIY AN++E D + NP+ V ++A+ +G +
Sbjct: 176 RSVECNEEEGEWLSSVALLTNKPIIYAANMSEDDFKNGIEGNPYYKVVADIAASEHAGVL 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++EAE+ + EE+ +L+ +G++ESGL LIR+ YSLLGL +Y T+G+ E +AWT
Sbjct: 236 PICAEIEAEIAGMEPEEKELFLSDMGLTESGLDRLIRACYSLLGLISYLTAGQPEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IHSDFE+GFIRAE + Y + + GS+AAA+EKGLV
Sbjct: 296 IKKGTKAPQAAGKIHSDFERGFIRAEVIGYQELLDNGSIAAAKEKGLV 343
>gi|423595351|ref|ZP_17571381.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD048]
gi|401222027|gb|EJR28629.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD048]
Length = 366
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L +++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVHLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKV 345
>gi|312793829|ref|YP_004026752.1| gtp-binding protein ychf [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344996313|ref|YP_004798656.1| GTP-binding protein YchF [Caldicellulosiruptor lactoaceticus 6A]
gi|312180969|gb|ADQ41139.1| GTP-binding protein YchF [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343964532|gb|AEM73679.1| GTP-binding protein YchF [Caldicellulosiruptor lactoaceticus 6A]
Length = 362
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 255/351 (72%), Gaps = 14/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLAKIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
+ D++ INLEL+F+D++ +E+R++K +K AK+S KE A E +EKI L GK
Sbjct: 120 RRDIETINLELIFADMEVLERRLDKTRK-LAKNS----KEAAHELEIMEKIYSTLESGKM 174
Query: 236 ARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
AR++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 175 ARTLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGS 230
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +
Sbjct: 231 EVIVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVR 290
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGLV
Sbjct: 291 AWTIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLV 341
>gi|430888493|ref|ZP_19484366.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1575]
gi|430556009|gb|ELA95532.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1575]
Length = 366
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKVG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|430820761|ref|ZP_19439383.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0045]
gi|430439147|gb|ELA49519.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0045]
Length = 366
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAILDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|261206905|ref|ZP_05921594.1| translation-associated GTPase [Enterococcus faecium TC 6]
gi|289567296|ref|ZP_06447675.1| GTP-binding protein YchF [Enterococcus faecium D344SRF]
gi|294616671|ref|ZP_06696442.1| GTP-binding protein YchF [Enterococcus faecium E1636]
gi|430850622|ref|ZP_19468379.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1185]
gi|260078533|gb|EEW66235.1| translation-associated GTPase [Enterococcus faecium TC 6]
gi|289160915|gb|EFD08836.1| GTP-binding protein YchF [Enterococcus faecium D344SRF]
gi|291590491|gb|EFF22229.1| GTP-binding protein YchF [Enterococcus faecium E1636]
gi|430534981|gb|ELA75404.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1185]
Length = 366
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPN+GKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNIGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 345
>gi|289766198|ref|ZP_06525576.1| GTP-binding protein [Fusobacterium sp. D11]
gi|289717753|gb|EFD81765.1| GTP-binding protein [Fusobacterium sp. D11]
Length = 364
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLA--AGNKYVESVKEFAKGIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKISQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|294781875|ref|ZP_06747207.1| GTP-binding protein YchF [Fusobacterium sp. 1_1_41FAA]
gi|294481686|gb|EFG29455.1| GTP-binding protein YchF [Fusobacterium sp. 1_1_41FAA]
Length = 364
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 268/373 (71%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLNALAQIINPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D +++HV+G+VDP +D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDENVIHVSGQVDPIND 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+D++ IEK +EK K +++K+KE E A L K+++ L + K ++
Sbjct: 125 IEVINTELIFADIETIEKAIEK----HEKLARNKIKESVELMAVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +S
Sbjct: 181 LDLTDEEKQVLKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDDESKKEFLETLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVL-------RLEGKEYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VHDGDLMEFLFNV 364
>gi|357032400|ref|ZP_09094339.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
morbifer G707]
gi|356414172|gb|EHH67820.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
morbifer G707]
Length = 368
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 249/350 (71%), Gaps = 12/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPN G VAVPD RL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNTGRVAVPDARLDTLARIGK 64
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 65 SQRTIPTSLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 124
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D D+I EL+ +DLD +EKR ++K +G +D+Q++L+ +E + AL
Sbjct: 125 DPVRDADIIETELMLADLDSLEKRQVNLQKRARGNDRDAQAQLE------LIEPLIAALR 178
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+PAR+ E+++ + L LLT KP++YV NV E+ A N H V A +
Sbjct: 179 EGRPARTAVPEGQEKEAAR-LQLLTTKPVLYVCNVEEASTAT--GNAHSEAVRRRAEEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA +EAE+++LP E+R E+L LG+S+SGL +I + YSLLGLRTYFT G KE
Sbjct: 236 AGAVVVSAAIEAEVSQLPPEDRTEFLEGLGLSDSGLDRVIAAGYSLLGLRTYFTVGPKEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAA VIH+DFE+GFI ETVA++D+VA A A+E G
Sbjct: 296 RAWTITEGTRAPQAAAVIHNDFERGFIACETVAFNDYVACNGEAGAKEAG 345
>gi|229035133|ref|ZP_04189079.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1271]
gi|228728199|gb|EEL79229.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1271]
Length = 369
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/351 (54%), Positives = 257/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENS 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 348
>gi|21230349|ref|NP_636266.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66769657|ref|YP_244419.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. campestris str. 8004]
gi|21111903|gb|AAM40190.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574989|gb|AAY50399.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 363
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNELAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHADIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR------KPVLAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RS L++ E+ ++ L LLT+KP++Y+ NV E + NPH++ V A+
Sbjct: 174 DGKAGRSAGLDEEEKALVRDLFLLTLKPVMYICNVLEDGFEN---NPHLDAVRAHAATEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVREV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+A+DDF+ + AR+ G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAFDDFIKYRGESGARDAG 340
>gi|423461745|ref|ZP_17438541.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X2-1]
gi|423484502|ref|ZP_17461191.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-2]
gi|401134978|gb|EJQ42584.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X2-1]
gi|401137963|gb|EJQ45538.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-2]
Length = 366
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|315640397|ref|ZP_07895510.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
italicus DSM 15952]
gi|315483853|gb|EFU74336.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
italicus DSM 15952]
Length = 366
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D+D INLELV +DLD I KR ++ K K KD Q+ AE A L+KI+ L +G
Sbjct: 120 NPLEDIDTINLELVLADLDSITKRYTRVAKVAKTKDKQAV----AELAVLDKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARS+ + E+ +K L LLT KP++YVANVAE D+AD N +V EV N A+ +
Sbjct: 176 LSARSIEFTEEEQKIVKSLFLLTTKPVLYVANVAEEDVADTEGNHYVQEVRNFAASENAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVCARAEEEIAELEEEDKAEFLEALGIEESGLDKLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 296 WTFRKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMQAAKEAGRV 345
>gi|126700276|ref|YP_001089173.1| GTP-binding protein YchF [Clostridium difficile 630]
gi|254976255|ref|ZP_05272727.1| putative GTP-binding protein [Clostridium difficile QCD-66c26]
gi|255093641|ref|ZP_05323119.1| putative GTP-binding protein [Clostridium difficile CIP 107932]
gi|255101830|ref|ZP_05330807.1| putative GTP-binding protein [Clostridium difficile QCD-63q42]
gi|255307697|ref|ZP_05351868.1| putative GTP-binding protein [Clostridium difficile ATCC 43255]
gi|255315390|ref|ZP_05356973.1| putative GTP-binding protein [Clostridium difficile QCD-76w55]
gi|255518055|ref|ZP_05385731.1| putative GTP-binding protein [Clostridium difficile QCD-97b34]
gi|255651171|ref|ZP_05398073.1| putative GTP-binding protein [Clostridium difficile QCD-37x79]
gi|260684237|ref|YP_003215522.1| GTP-binding protein [Clostridium difficile CD196]
gi|260687896|ref|YP_003219030.1| GTP-binding protein [Clostridium difficile R20291]
gi|306521018|ref|ZP_07407365.1| putative GTP-binding protein [Clostridium difficile QCD-32g58]
gi|384361879|ref|YP_006199731.1| GTP-binding protein YchF [Clostridium difficile BI1]
gi|423081341|ref|ZP_17069949.1| GTP-binding protein YchF [Clostridium difficile 002-P50-2011]
gi|423084600|ref|ZP_17073100.1| GTP-binding protein YchF [Clostridium difficile 050-P50-2011]
gi|423092700|ref|ZP_17080504.1| GTP-binding protein YchF [Clostridium difficile 70-100-2010]
gi|115251713|emb|CAJ69548.1| putative GTP-binding protein [Clostridium difficile 630]
gi|260210400|emb|CBA64799.1| putative GTP-binding protein [Clostridium difficile CD196]
gi|260213913|emb|CBE05961.1| putative GTP-binding protein [Clostridium difficile R20291]
gi|357551007|gb|EHJ32811.1| GTP-binding protein YchF [Clostridium difficile 002-P50-2011]
gi|357552170|gb|EHJ33945.1| GTP-binding protein YchF [Clostridium difficile 050-P50-2011]
gi|357553570|gb|EHJ35317.1| GTP-binding protein YchF [Clostridium difficile 70-100-2010]
Length = 365
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 257/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+ L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDERLNKLQELYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KIVPTAIEFCDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K +K D +E L+ I L + K
Sbjct: 120 LRDIETINLELIFSDIEILERRINKTQKAAKADKTLG----SELDLLKSIMSTLEESKCV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
R++ + E+ + L LLT KP+IY +NV+E DLAD G +N +V +V A + V
Sbjct: 176 RTMEFTEDEQTFVNSLDLLTSKPVIYASNVSEDDLADNGENNKYVQQVKAFAETEDAEVV 235
Query: 296 TISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+EAE++EL S EE+ E+L +LG+ +SGL LI+S+Y+LLGL ++ T+G KE +AW
Sbjct: 236 VVCAQIEAEISELDSAEEKKEFLETLGLEQSGLDKLIKSSYALLGLISFLTAGPKEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQA G IHSD E+GFIRAET+A++D V G++AAA+EKGLV
Sbjct: 296 TIKVGSKAPQAGGKIHSDIERGFIRAETIAFNDLVEHGTMAAAKEKGLV 344
>gi|310659210|ref|YP_003936931.1| putative GTP-binding protein [[Clostridium] sticklandii]
gi|308825988|emb|CBH22026.1| putative GTP-binding protein [[Clostridium] sticklandii]
Length = 365
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 260/349 (74%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL L+ L +S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNVGVVAVPDDRLEKLAELYESK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED+++VHV+G V+P
Sbjct: 60 KLVPTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDSNVVHVDGDVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K +K D + D K L+ ++ GK A
Sbjct: 120 IRDIETINLELIFSDMEMLERRLAKSQKAAKSDKALAAEVDLIKTVLDTLES----GKSA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
R++ L+D E+ +K LL+ KPIIYVANV+E ++AD NP+V +V A + V
Sbjct: 176 RTLDLSDDEKAVVKSFNLLSSKPIIYVANVSEEEVADDAKDNPYVKQVREFAQTEDAEVV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SA++E E+++ EE++E+L +G+ +SGL LI+++Y LLGL ++ T+G E++AWT
Sbjct: 236 VVSAKIEEEISQFDKEEKIEFLKDMGLDKSGLDKLIQASYKLLGLISFLTAGPMESRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVA-AGSLAAAREKGLV 403
I+ G APQA G IHSD E+GFIRAET+++DD V G++A+A+EKGLV
Sbjct: 296 IKDGTKAPQAGGKIHSDIERGFIRAETISFDDLVVHGGNMASAKEKGLV 344
>gi|336400264|ref|ZP_08581049.1| GTP-binding protein YchF [Fusobacterium sp. 21_1A]
gi|336162914|gb|EGN65858.1| GTP-binding protein YchF [Fusobacterium sp. 21_1A]
Length = 364
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|188992869|ref|YP_001904879.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. campestris str. B100]
gi|167734629|emb|CAP52839.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
Length = 385
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 23 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNELAEIVK 81
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 82 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHADIIHVNNKV 141
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL
Sbjct: 142 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR------KPVLAKLQAALA 195
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RS L++ E+ ++ L LLT+KP++Y+ NV E + NPH++ V A+
Sbjct: 196 DGKAGRSAGLDEEEKALVRDLFLLTLKPVMYICNVLEDGFEN---NPHLDAVRAHAATEG 252
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 253 AEVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVREV 312
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+A+DDF+ + AR+ G
Sbjct: 313 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAFDDFIKYRGESGARDAG 362
>gi|406037688|ref|ZP_11045052.1| GTP-binding protein YchF [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 363
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/380 (51%), Positives = 258/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDARLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DLD + K R+ K KG KD+ A KAALEKIQ L
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKDAI------ATKAALEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH++ V LA++
Sbjct: 174 EGKPARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIH+DFEKGFIRAE +AYDDF+ A+E G W
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFIQYNGENGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + +L + F++
Sbjct: 344 LEGKTYIVQDGDVLHFRFNV 363
>gi|119383088|ref|YP_914144.1| GTP-dependent nucleic acid-binding protein EngD [Paracoccus
denitrificans PD1222]
gi|119372855|gb|ABL68448.1| GTP-binding protein YchF [Paracoccus denitrificans PD1222]
Length = 365
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 246/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPDPRL L+G++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDPRLDKLAGIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRITFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I EL+ +DL+ IE+R+ + +K K D ++ +E KAA Q AL G
Sbjct: 121 DPIADAETIETELMIADLESIERRLANIQRKLKGGDKEAVAQEKLLKAA----QAALESG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + D +R + L LLT KP+++V NV E D A G N V +A++ +G
Sbjct: 177 KPARTVQVADEDRKAWDMLQLLTAKPVLFVCNV-EEDKAATG-NSQSERVAQMAAEQGAG 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++LP+EE +L +G+ E+GL LIR Y LLGL TYFT G KE +A
Sbjct: 235 HVVISAKIEEEISQLPAEEADMFLEEMGLHEAGLDRLIREGYKLLGLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH DFE+GFIRAET+AYDD+V A ARE G
Sbjct: 295 WTIHKGTLAPAAAGVIHGDFERGFIRAETIAYDDYVTYKGEAGAREAG 342
>gi|423399688|ref|ZP_17376861.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-2]
gi|423479622|ref|ZP_17456337.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-1]
gi|401657809|gb|EJS75314.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-2]
gi|402425217|gb|EJV57372.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-1]
Length = 366
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 345
>gi|312622163|ref|YP_004023776.1| GTP-binding protein ychf [Caldicellulosiruptor kronotskyensis 2002]
gi|312202630|gb|ADQ45957.1| GTP-binding protein YchF [Caldicellulosiruptor kronotskyensis 2002]
Length = 362
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/351 (55%), Positives = 255/351 (72%), Gaps = 14/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
+ D++ INLEL+F+D++ +E+R++K +K AK++ KE A E +EKI L GK
Sbjct: 120 RRDIETINLELIFADMEMLERRLDKTRK-LAKNN----KEAAHELEIMEKIYSTLESGKM 174
Query: 236 ARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
AR++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 175 ARTLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGS 230
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ I A++E E+ +LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +
Sbjct: 231 EVIVICAKIEEEIADLPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVR 290
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKG V
Sbjct: 291 AWTIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGFV 341
>gi|34763377|ref|ZP_00144329.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27886950|gb|EAA24070.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 364
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 264/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++I+HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNIIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+D++ ++K +EK K +++K+KE E + L KI++ L + K ++
Sbjct: 125 IEVINTELIFADIETVDKAIEK----HEKLARNKIKESVELMSVLPKIKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|229176151|ref|ZP_04303643.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MM3]
gi|228607310|gb|EEK64640.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MM3]
Length = 369
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 257/351 (73%), Gaps = 6/351 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEE 177
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ +
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENA 237
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G V
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKV 348
>gi|50085194|ref|YP_046704.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter sp.
ADP1]
gi|49531170|emb|CAG68882.1| putative GTP-binding protein [Acinetobacter sp. ADP1]
Length = 367
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/378 (51%), Positives = 259/378 (68%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDARLDKLAAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ IN EL +DLD + K + +L K K+ D ++ A KA LEKIQ L +G
Sbjct: 124 DPLDDIATINTELALADLDTVAKALLRLTKVAKSGDKEAL----ATKAVLEKIQPLLDEG 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 180 KPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAI 236
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +A
Sbjct: 237 VVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVRA 296
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A A+E G W L
Sbjct: 297 WTVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFVQYNGEAGAKEAG--KW-----RLE 349
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 350 GKTYVVQDGDVLHFRFNV 367
>gi|389706441|ref|ZP_10186454.1| GTP-binding protein YchF [Acinetobacter sp. HA]
gi|388610576|gb|EIM39693.1| GTP-binding protein YchF [Acinetobacter sp. HA]
Length = 363
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/378 (51%), Positives = 258/378 (68%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ IN EL +DL+ + K + +L K K D ++ A KA L+KI L +G
Sbjct: 120 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAI----ATKAVLDKILPLLDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ TL+D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA+ +
Sbjct: 176 KPARAATLDDDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRELAAAENAI 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +A
Sbjct: 233 VVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAGVIH+DFEKGFIRAE +AYDDFV A A+E G W L
Sbjct: 293 WTVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFVQYNGEAGAKEAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 346 GKTYIVQDGDVLHFRFNV 363
>gi|238020001|ref|ZP_04600427.1| hypothetical protein VEIDISOL_01877 [Veillonella dispar ATCC 17748]
gi|237863525|gb|EEP64815.1| hypothetical protein VEIDISOL_01877 [Veillonella dispar ATCC 17748]
Length = 397
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/384 (51%), Positives = 269/384 (70%), Gaps = 9/384 (2%)
Query: 21 MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENG 80
M +F RN L+ T + +S +L GIVGLPNVGKSTLFNA+ + G
Sbjct: 1 MFDKVFIRNMFLMKAF---TKNEINVLIKGGTMSTNLEVGIVGLPNVGKSTLFNAITKAG 57
Query: 81 KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140
A+AAN+PFCTIEPNVG+V VPD RL VL+ + S++ +PA++ FVDIAGLV+GAS+GEG
Sbjct: 58 -AEAANYPFCTIEPNVGVVDVPDNRLAVLAEMFGSKRILPAAMRFVDIAGLVEGASKGEG 116
Query: 141 LGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200
LGNKFLSHIR+VD+I QV+RCF+D +I HV+G +DP D+++IN EL +DL+ +EKR +
Sbjct: 117 LGNKFLSHIRQVDAIAQVIRCFDDPNITHVSGSIDPIRDIEIINTELCLADLESVEKRKQ 176
Query: 201 KLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKP 259
+++K K+ D ++ AE LE+I + L + KP R+ L + E + IK+L LLT KP
Sbjct: 177 RIEKIAKSGDKDAR----AELPLLERIIEGLGEAKPVRAQGLEEEELEMIKELTLLTAKP 232
Query: 260 IIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLAS 319
+YVAN++E +++D SN +V V A + +G V +SA++E+E+ EL EE +L
Sbjct: 233 SLYVANISEDEVSDYSSNEYVKRVEEYAKNEGAGIVVVSARIESEIAELSEEESAAFLED 292
Query: 320 LGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIR 379
LG+ ESGL LI+++Y+LLGL YFT+GE E +AWTI G APQAAG IHSD EKGFIR
Sbjct: 293 LGLEESGLTKLIKASYALLGLINYFTAGEMEARAWTIVNGTKAPQAAGKIHSDIEKGFIR 352
Query: 380 AETVAYDDFVAAGSLAAAREKGLV 403
AE V++DD A GS AA+EKGLV
Sbjct: 353 AEIVSFDDLQACGSQNAAKEKGLV 376
>gi|312127334|ref|YP_003992208.1| gtp-binding protein ychf [Caldicellulosiruptor hydrothermalis 108]
gi|311777353|gb|ADQ06839.1| GTP-binding protein YchF [Caldicellulosiruptor hydrothermalis 108]
Length = 362
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/351 (55%), Positives = 255/351 (72%), Gaps = 14/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLAKIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
+ D++ INLEL+F+D++ +E+R++K +K AK++ KE A E +EKI L GK
Sbjct: 120 RRDIETINLELIFADMEVLERRLDKTRK-LAKNN----KEAAHELEIMEKIYSTLESGKM 174
Query: 236 ARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
AR++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 175 ARTLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGS 230
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +
Sbjct: 231 EVIVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVR 290
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGLV
Sbjct: 291 AWTIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLV 341
>gi|302877830|ref|YP_003846394.1| GTP-binding protein YchF [Gallionella capsiferriformans ES-2]
gi|302580619|gb|ADL54630.1| GTP-binding protein YchF [Gallionella capsiferriformans ES-2]
Length = 363
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 265/379 (69%), Gaps = 18/379 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPR+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRMDELAKIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCFED ++VHV G+V
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFEDENVVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +D+ +E+ + + GK S K DA K A LEK+ L +
Sbjct: 120 DPLSDIEVILTELALADMAVVERTLH--RDGKKAKSGDK---DAIKMVAVLEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP R+ L+D E++ +K LC+LT+KP +YV NV E +NPH++ + A+ +
Sbjct: 175 GKPVRTFGLSDDEKEIVKPLCMLTIKPAMYVGNVMEDGFE---NNPHLDRLREYAAKEGA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A++EAEL++L +R+E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVVLCAKIEAELSDLDDADRLEFLADLGLDEPGLNKLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL 412
AWTI G TAPQAAGVIH+DFE+GFIRA+T+A+ DF+A G A A+EKG + +
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQTIAFSDFIACGGEAGAKEKGKM-------RV 344
Query: 413 ASYKYFHWNSYMLRYFFSL 431
+Y + +L + F++
Sbjct: 345 EGKEYVVQDGDVLNFLFNV 363
>gi|255656639|ref|ZP_05402048.1| putative GTP-binding protein [Clostridium difficile QCD-23m63]
gi|296449905|ref|ZP_06891669.1| GTP-binding protein YchF [Clostridium difficile NAP08]
gi|296878286|ref|ZP_06902295.1| GTP-binding protein YchF [Clostridium difficile NAP07]
gi|296261175|gb|EFH08006.1| GTP-binding protein YchF [Clostridium difficile NAP08]
gi|296430734|gb|EFH16572.1| GTP-binding protein YchF [Clostridium difficile NAP07]
Length = 365
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 257/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+ L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDERLNKLQELYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KIVPTAIEFCDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K +K D +E L+ I L + K
Sbjct: 120 LRDIETINLELIFSDIEILERRINKTQKAAKADKTLG----SELDLLKSIMSTLEESKCV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
R++ + E+ + L LLT KP+IY +NV+E DLAD G +N +V +V A + V
Sbjct: 176 RTMEFTEDEQIFVNSLDLLTSKPVIYASNVSEDDLADNGENNKYVQQVKAFAETEDAEVV 235
Query: 296 TISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+EAE++EL S EE+ E+L +LG+ +SGL LI+S+Y+LLGL ++ T+G KE +AW
Sbjct: 236 VVCAQIEAEISELDSAEEKKEFLETLGLEQSGLDKLIKSSYALLGLISFLTAGPKEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQA G IHSD E+GFIRAET+A++D V G++AAA+EKGLV
Sbjct: 296 TIKVGSKAPQAGGKIHSDIERGFIRAETIAFNDLVEHGTMAAAKEKGLV 344
>gi|424971797|ref|ZP_18385205.1| GTP-binding protein YchF [Enterococcus faecium P1139]
gi|424978586|ref|ZP_18391496.1| GTP-binding protein YchF [Enterococcus faecium P1123]
gi|402957353|gb|EJX74745.1| GTP-binding protein YchF [Enterococcus faecium P1139]
gi|402961169|gb|EJX78226.1| GTP-binding protein YchF [Enterococcus faecium P1123]
Length = 370
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 258/350 (73%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+ F TI+PNVG+V VPD RL L+ L
Sbjct: 5 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYLFATIDPNVGMVEVPDWRLQRLTELVH 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 64 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLELV +DL+ I KR ++ K K KD + AE A L+KI+ L +G
Sbjct: 124 DPLEDIDTINLELVLADLESINKRYTRVAKVAKTKDKDAV----AELAVLDKIKPVLEEG 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 180 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 239
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 240 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 299
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G V
Sbjct: 300 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRV 349
>gi|302871602|ref|YP_003840238.1| GTP-binding protein YchF [Caldicellulosiruptor obsidiansis OB47]
gi|302574461|gb|ADL42252.1| GTP-binding protein YchF [Caldicellulosiruptor obsidiansis OB47]
Length = 362
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/351 (55%), Positives = 256/351 (72%), Gaps = 14/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL +L+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDILARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
+ D++ INLEL+F+D++ +E+R++K +K AK++ KE A E +EKI L GK
Sbjct: 120 RRDIETINLELIFADMEMLERRLDKTRK-LAKNN----KEAAHEVEIMEKIYSTLESGKM 174
Query: 236 ARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
AR++ +D D +K L LLT KP IY AN++E+D+ N +V + +A++ S
Sbjct: 175 ARTLKFDD--EDDLKFVNSLNLLTFKPTIYAANISENDIGK--ENEYVKIIKEIAAEEGS 230
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +
Sbjct: 231 EVIVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYKLLGLISFLTAGEKEVR 290
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGLV
Sbjct: 291 AWTIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLV 341
>gi|386577008|ref|YP_006073413.1| GTP-binding protein [Streptococcus suis GZ1]
gi|292557470|gb|ADE30471.1| GTP-binding protein [Streptococcus suis GZ1]
Length = 377
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/359 (54%), Positives = 257/359 (71%), Gaps = 15/359 (4%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
SK +MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+
Sbjct: 3 SKKNMSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLT 61
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
L +K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 ELIIPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMRE 121
Query: 171 NGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAA 222
G+ VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A
Sbjct: 122 QGREDAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAV 175
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
LEKI+ L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP + +V +
Sbjct: 176 LEKIKPVLEDGKSARTVEFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPEAISYVQQ 235
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
+ + A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL T
Sbjct: 236 IRDFAATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGT 295
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
YFT+GEKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 296 YFTAGEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLMTYGSEKAVKEAG 354
>gi|260495639|ref|ZP_05815763.1| GTP-binding protein [Fusobacterium sp. 3_1_33]
gi|260196822|gb|EEW94345.1| GTP-binding protein [Fusobacterium sp. 3_1_33]
Length = 364
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVELVKEFAKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|392427863|ref|YP_006468857.1| GTP-binding protein YchF [Desulfosporosinus acidiphilus SJ4]
gi|391357826|gb|AFM43525.1| GTP-binding protein YchF [Desulfosporosinus acidiphilus SJ4]
Length = 366
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/378 (53%), Positives = 265/378 (70%), Gaps = 13/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVEVPDLRLQKLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G +
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDPNVVHVEGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DPK D++ I+LEL+ +D++ IE+R E+ K K D K AE L +++ G
Sbjct: 120 DPKRDIETIDLELILADMESIERRSERTNKLLKMGDK----KAGAEAELLNRLKDTFNQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++T +D ER+ +K LLT+KPI+YVANV E LA NP+V +V +A+ +
Sbjct: 176 KGARALTFSDEEREILKGFSLLTLKPIVYVANVREDGLATAEDNPYVQQVRAIAAAEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + AQ+EAE+ EL +EE+ +L LG+ ESGL LIR ++ LLGL T+FTSG E KA
Sbjct: 236 VVVVCAQIEAEIAELEAEEKEVFLQDLGLEESGLDQLIRVSFHLLGLMTFFTSGPMEVKA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WTI G APQAAGVIH+DFE+GFIRAE V+Y+DFV L AR+KGLV L
Sbjct: 296 WTIYQGTKAPQAAGVIHTDFERGFIRAEVVSYEDFVENDGLNGARDKGLV-------RLE 348
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y N ++ + F++
Sbjct: 349 GKDYIMRNGDIVHFRFNV 366
>gi|423520688|ref|ZP_17497161.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA4-10]
gi|401179785|gb|EJQ86948.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA4-10]
Length = 366
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVY----EHEILVRLKEAFEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIKESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G V
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYTDLMTNGSMTAAKEAGKV 345
>gi|302671228|ref|YP_003831188.1| GTP-binding protein YchF [Butyrivibrio proteoclasticus B316]
gi|302395701|gb|ADL34606.1| GTP-binding protein YchF [Butyrivibrio proteoclasticus B316]
Length = 365
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 254/349 (72%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ N A AAN+PF TI+PNVG+VAVPD RL L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLT-NAGALAANYPFATIDPNVGVVAVPDKRLKALGDLYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIRETDAIVHVVRCFEDPNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+F+DL+ +E+R+ K+ K D + E L KI+ L D K A
Sbjct: 120 ARDIETINLELIFADLEVLERRIAKVTKTARMDKTAA----KELELLNKIKATLEDNKMA 175
Query: 237 RSVTLND-FERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
R + + D E+ + + LLT KP+IY ANV + DLAD G SN +V V +LA+ S
Sbjct: 176 RELEIEDEDEKALMNSMDLLTWKPVIYAANVKDDDLADDGASNQYVQAVRDLAAKSGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
ISAQ+EAE++EL +E+ E+L SLG++ESGL LI ++Y LGL ++ TSGE ET+AW
Sbjct: 236 FVISAQIEAEISELDEDEKAEFLDSLGLTESGLDKLIAASYRTLGLMSFLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE + Y+D + GSL+AAR+KGLV
Sbjct: 296 TIKIGTKAPQAAGKIHTDFERGFIKAEVINYEDLLREGSLSAARDKGLV 344
>gi|294793025|ref|ZP_06758171.1| GTP-binding protein YchF [Veillonella sp. 6_1_27]
gi|294455970|gb|EFG24334.1| GTP-binding protein YchF [Veillonella sp. 6_1_27]
Length = 368
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 260/352 (73%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV+G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AELPLLERIIEGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R+ L + E + IK+L LLT KP +YVAN++E +++D SN +V V A +
Sbjct: 176 EAKPVRAQGLEEEELEMIKELTLLTAKPSLYVANISEDEVSDYSSNEYVKRVEEYAKNEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E
Sbjct: 236 AGIVVVSARIESEIAELSEEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV
Sbjct: 296 RAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLV 347
>gi|262067285|ref|ZP_06026897.1| GTP-binding protein YchF [Fusobacterium periodonticum ATCC 33693]
gi|291379011|gb|EFE86529.1| GTP-binding protein YchF [Fusobacterium periodonticum ATCC 33693]
Length = 364
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 268/373 (71%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDGRLNELAKIINPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D +++HV+G+V+P SD
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDENVIHVSGEVNPISD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+D++ IEK +EK K +++K+KE E A L K+++ L + K ++
Sbjct: 125 IEVINTELIFADIETIEKAIEK----HEKLARNKIKESVELMAVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +S
Sbjct: 181 LDLTDEEKQVLKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDDESKKEFLETLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVL-------RLEGKEYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|224823795|ref|ZP_03696904.1| GTP-binding protein YchF [Pseudogulbenkiania ferrooxidans 2002]
gi|224604250|gb|EEG10424.1| GTP-binding protein YchF [Pseudogulbenkiania ferrooxidans 2002]
Length = 363
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 255/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDPRLAELAKIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D+++VHV GKV
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEK--AALEKIQQALM 231
DP SD++ I EL +DL +EK +++ KK K+ D +DA + A LEK++ L
Sbjct: 120 DPISDIETIGTELALADLTTVEKAIQRDGKKAKSGD------KDAIRLIAVLEKVRAHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
G PARS+ L+ E+ +K CLLT+KP +YVANVAE +NPH++++ LA
Sbjct: 174 QGLPARSLGLDAEEQALLKPFCLLTIKPAMYVANVAEDGF---DNNPHLDKLKALADKEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL ++ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVALCAAIESEIVELDDADKAEFLAEMGLEEPGLNRLIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T++YDDF+A G A A+E G
Sbjct: 291 RAWTIHVGDTAPQAAGVIHTDFERGFIRAQTISYDDFIACGGEAKAKEAG 340
>gi|414175241|ref|ZP_11429645.1| GTP-binding protein YchF [Afipia broomeae ATCC 49717]
gi|410889070|gb|EKS36873.1| GTP-binding protein YchF [Afipia broomeae ATCC 49717]
Length = 365
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/347 (55%), Positives = 243/347 (70%), Gaps = 5/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SQQIIPTQLTFVDIAGLVKGASKGEGLGNQFLATIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P +D++ I EL+ +DLD +EKR++ L K KAK + KE E +E+ + L DGK
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDSLSK-KAKGNDKDAKEQLE--LVERALKLLRDGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR + E + + L LLT KP++YV NV E A N +V A +
Sbjct: 178 PARFLERKAEEERAFRMLGLLTSKPVLYVCNVEEG--AAATGNSFSQQVFEHAKKEGAVA 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VAISAKIESEIATLSREERVDFLDTLGLEEAGLDRLIRAGYELLHLITYFTVGPKEARAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G AP AAGVIH+DFEKGFIRAET+AYDD++A G A AR+ G
Sbjct: 296 TITKGTKAPAAAGVIHTDFEKGFIRAETIAYDDYIANGGEAGARDTG 342
>gi|288817625|ref|YP_003431972.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
gi|384128386|ref|YP_005510999.1| GTP-binding protein YchF [Hydrogenobacter thermophilus TK-6]
gi|288787024|dbj|BAI68771.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
gi|308751223|gb|ADO44706.1| GTP-binding protein YchF [Hydrogenobacter thermophilus TK-6]
Length = 365
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/370 (52%), Positives = 256/370 (69%), Gaps = 9/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ E+ KAQAAN+PFCTIEPNVG+V VPD RL+ ++ L +
Sbjct: 1 MSLSVGIVGLPNVGKSTLFNAITESAKAQAANYPFCTIEPNVGVVEVPDRRLYEIARLER 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+K P +EFVDIAGLV+ ASQGEGLGN+FL+HIREVD+I V+RCFED DIVH+ G V
Sbjct: 61 SKKITPTFIEFVDIAGLVRNASQGEGLGNQFLAHIREVDAIAMVLRCFEDPDIVHIEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D +I+LEL+ DL+ + KR+EK++K A+ K KE+ EK ++ +++ L +
Sbjct: 121 DPVRDAQIIDLELIAKDLETVSKRLEKVEK-MARIGDKKAKEELEKLSM--LREILEGME 177
Query: 235 PARSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R L D + + L LLT+KP++YVANV E L N H+ +VM A + ++
Sbjct: 178 PVRRRELAQDVREYAERVLFLLTIKPVLYVANVDEEGLK---GNEHLEKVMGYARNEKAP 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A++EAEL LP+++R E L + G+ E GL L+R Y LLGL T+FT+GEKE +A
Sbjct: 235 VVAICAKLEAELVSLPAQDRKELLLAYGLEEPGLNRLVREAYKLLGLITFFTAGEKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSW--LHYHEH 411
WTI+ G APQAAG IHSDFE+GFI AE + Y+D++ GS++ A+E GLV Y
Sbjct: 295 WTIKRGTKAPQAAGKIHSDFERGFIAAEVINYEDYIKVGSISKAKEMGLVRLEGRDYQIK 354
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 355 DGDIVYFRFN 364
>gi|262278826|ref|ZP_06056611.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262259177|gb|EEY77910.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 366
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/382 (50%), Positives = 260/382 (68%), Gaps = 20/382 (5%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VKPQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPL 174
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++
Sbjct: 175 LDEGKPARAADLSDDERKLVRGFGLITLKPTMYIANVAEDGFEN---NPHLDAVKKLAAE 231
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +
Sbjct: 232 ENAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQ 291
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYH 409
E +AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G W
Sbjct: 292 EVRAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG--KW---- 345
Query: 410 EHLASYKYFHWNSYMLRYFFSL 431
L Y + ++ + F++
Sbjct: 346 -RLEGKTYIVQDGDVMHFRFNV 366
>gi|366166794|ref|ZP_09466549.1| GTP-binding protein YchF [Acetivibrio cellulolyticus CD2]
Length = 364
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 254/348 (72%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDKLAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++EFVDIAGLVKGAS+GEGLGNKFLSHIREVDSI+ VVRCFED++IVHV+G V P
Sbjct: 60 KLTPTAIEFVDIAGLVKGASKGEGLGNKFLSHIREVDSIVHVVRCFEDSNIVHVDGSVGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
DV+ I +ELV +DL+ +EKR+++ +K K+ D + + + D E+I + L +GKP
Sbjct: 120 VRDVETIEMELVLADLEVMEKRIDRTRKMLKSGDKKFQTELDL----YEEILKTLSEGKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
ARS+ + + + QL LLT KP++Y ANVAE L D NP + E+++ A S +
Sbjct: 176 ARSMKFDAEQEKMVDQLFLLTSKPVLYAANVAEDGLHDTSKNPLLQELVDHAKKEGSEVM 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E E+ +L EE+ E+L LG+SESGL L++++Y LLGL ++ T+G +E +AWT
Sbjct: 236 VICAKIEEEIAQLEDEEKAEFLKELGLSESGLDRLVKASYKLLGLISFLTAGPQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G APQAAG IH+DFE+GFIRAE VA+ D + GS AA+EKGLV
Sbjct: 296 IVKGTKAPQAAGKIHTDFERGFIRAEIVAFKDLMECGSYTAAKEKGLV 343
>gi|312135392|ref|YP_004002730.1| gtp-binding protein ychf [Caldicellulosiruptor owensensis OL]
gi|311775443|gb|ADQ04930.1| GTP-binding protein YchF [Caldicellulosiruptor owensensis OL]
Length = 362
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/351 (55%), Positives = 254/351 (72%), Gaps = 14/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDGKP 235
+ D++ INLEL+F+D++ +E+R++K +K AK++ KE A E +EKI L GK
Sbjct: 120 RRDIETINLELIFADMEVLERRLDKTRK-LAKNN----KEAAHELEIMEKIYSTLESGKM 174
Query: 236 ARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
AR++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 175 ARTLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGS 230
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +
Sbjct: 231 EVIVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVR 290
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKG V
Sbjct: 291 AWTIKKGTKAPQAAGKIHSDFEKGFIRAEVVTFEVLVECGGFAQAKEKGFV 341
>gi|386716427|ref|YP_006182751.1| translation-associated GTPase [Halobacillus halophilus DSM 2266]
gi|384075984|emb|CCG47481.1| translation-associated GTPase [Halobacillus halophilus DSM 2266]
Length = 365
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/371 (52%), Positives = 270/371 (72%), Gaps = 11/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A +AN+PF TI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-ALSANYPFATIDPNVGIVEVPDSRLEKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVR FED ++ HV+G+V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRAFEDENVTHVSGEV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLEL+ +DL+ + KRM+++ K + KD + AE LEK++++L +
Sbjct: 120 DPITDIETINLELILADLETVSKRMDRVAKMARQKDKDAV----AEYTVLEKLKESLEEE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR+V +D + +K L LLT KPI+YVANV+E ++ + G N V ++ A+ +
Sbjct: 176 TPARAVEFSDDQEKIVKGLHLLTSKPILYVANVSEDEIGE-GDNEKVKQIREFAAKENAE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E+E+ EL EE+ E+L LG+ ESGL LI++TY+LLGL TYFT+GE+E +A
Sbjct: 235 VIVICAKIESEIAELDGEEKEEFLDDLGIEESGLDQLIKATYNLLGLATYFTAGEQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL- 412
WT + GMTAPQAAGVIH+DF++GFIRAETV+Y+D V AG++ AR++G V L E+L
Sbjct: 295 WTFKEGMTAPQAAGVIHTDFQRGFIRAETVSYEDLVDAGTMGVARDRGRVR-LEGKEYLV 353
Query: 413 --ASYKYFHWN 421
+F +N
Sbjct: 354 RDGDVIHFRFN 364
>gi|294794935|ref|ZP_06760070.1| GTP-binding protein YchF [Veillonella sp. 3_1_44]
gi|294454297|gb|EFG22671.1| GTP-binding protein YchF [Veillonella sp. 3_1_44]
Length = 368
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 260/352 (73%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV+G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AELPLLERIIEGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R+ L + E + IK+L LLT KP +YVAN++E +++D SN +V V A +
Sbjct: 176 EAKPVRAQGLEEEELEMIKELTLLTAKPSLYVANISEDEVSDYSSNEYVKRVEEYAKNEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E
Sbjct: 236 AGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV
Sbjct: 296 RAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLV 347
>gi|256846826|ref|ZP_05552281.1| GTP-binding protein [Fusobacterium sp. 3_1_36A2]
gi|256717792|gb|EEU31350.1| GTP-binding protein [Fusobacterium sp. 3_1_36A2]
Length = 364
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++I+HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNIIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+D++ ++K +EK K +++K+KE E + L KI++ L + K ++
Sbjct: 125 IEVINTELIFADIETVDKAIEK----HEKLARNKIKESVELMSVLPKIKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKISQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|425746704|ref|ZP_18864728.1| GTP-binding protein YchF [Acinetobacter baumannii WC-323]
gi|425485343|gb|EKU51737.1| GTP-binding protein YchF [Acinetobacter baumannii WC-323]
Length = 363
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 254/377 (67%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GK
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAL---ATKAVLEKIQPLLDEGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH+ V LA++ +
Sbjct: 177 PARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVQKLAAEENAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L ++ + E GL +IR+ Y LLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEAMDMEEPGLNVVIRAGYKLLGLQTYFTAGVQEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G W L
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFIQFNGENGAKEAG--KW-----RLEG 346
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 347 KTYIVQDGDVLHFRFNV 363
>gi|422937464|ref|ZP_16966756.1| GTP-dependent nucleic acid-binding protein EngD [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|339890929|gb|EGQ79982.1| GTP-dependent nucleic acid-binding protein EngD [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 364
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +S
Sbjct: 181 LNLADDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVELVKEFAKGIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|406039375|ref|ZP_11046730.1| GTP-binding protein YchF [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 363
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/380 (51%), Positives = 258/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDARLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K KG KD+ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKALLRLTKSAKGGDKDAI------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++
Sbjct: 174 EGKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKQLAAEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMQEPGLNVVIRAGYALLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A A+E G W
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFVQYNGEAGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + +L + F++
Sbjct: 344 LEGKTYVVQDGDVLHFRFNV 363
>gi|340029839|ref|ZP_08665902.1| GTP-binding protein YchF [Paracoccus sp. TRP]
Length = 365
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 247/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPDPRL L+ ++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDPRLDKLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED+D+ HV G+V
Sbjct: 61 SKQIIPTRITFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDDDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D D I EL+ +DL+ +E+R+ + +K K D + +E KAA Q AL G
Sbjct: 121 DPLADADTIETELMIADLESVERRLANIQRKLKGGDKDAVAQEKLLKAA----QAALESG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + D +R + L LLT KP+++V NV E D A G N + V +A++ +G
Sbjct: 177 KPARTVQVADEDRKAWDMLQLLTAKPVLFVCNV-EEDKAATG-NSQSDRVAQMAAEQGAG 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++LP+EE +L +G+ E+GL LIR Y LLGL TYFT G KE +A
Sbjct: 235 HVVISARIEEEISQLPAEEATMFLEEMGLHEAGLDRLIREGYKLLGLETYFTIGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP+AAGVIH DFE+GFIRAET+AY+D+V A ARE G
Sbjct: 295 WTIHKGTPAPRAAGVIHGDFERGFIRAETIAYEDYVTYKGEAGAREAG 342
>gi|384082304|ref|ZP_09993479.1| GTP-binding protein YchF [gamma proteobacterium HIMB30]
Length = 363
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/348 (54%), Positives = 250/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +A NFPFCTIEPN G+V +PDPR L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAQNFPFCTIEPNAGVVPIPDPRQDQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF+D +IVHV GKV
Sbjct: 60 PERVVPTAMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDDENIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP+SD++VIN EL +DL+ +EK+M K K+ K D +K A A EKI L +G
Sbjct: 120 DPESDIEVINTELALADLESVEKQMHKAQKQAKGGDKDAK----ALMAVCEKILPVLNEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RSV L+D E IK L LLT+KP +Y+ANVAE D NP +++V +A+ +
Sbjct: 176 RPVRSVELSDQELAVIKTLHLLTIKPTLYIANVAEDGFED---NPWLSQVREIAASENAE 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++EAE+ EL +E+VE+L LG++E+GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPICNKIEAEIAELDDDEKVEFLEELGLAEAGLDRVIRAGYHLLGLQTYFTAGPKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI TAPQAAG IH+DFEKGFIRAE +A+DDFV G AA++ G
Sbjct: 293 WTIPVDATAPQAAGKIHTDFEKGFIRAEVIAFDDFVTLGGEQAAKDAG 340
>gi|347541312|ref|YP_004848738.1| GTP-binding protein YchF [Pseudogulbenkiania sp. NH8B]
gi|345644491|dbj|BAK78324.1| GTP-binding protein YchF [Pseudogulbenkiania sp. NH8B]
Length = 363
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 253/349 (72%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDPRLAELAKIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D+++VHV GKV
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++ I EL +DL +EK ++ + GK S K DA + A LEK++ L
Sbjct: 120 DPISDIETIGTELALADLTTVEKAIQ--RDGKKAKSGDK---DAIRLIAVLEKVRAHLDQ 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G PARS+ L+ E+ +K CLLT+KP +YVANVAE +NPH++++ LA +
Sbjct: 175 GLPARSLGLDAEEQVLLKPFCLLTIKPAMYVANVAEDGF---DNNPHLDKLKALADKEGA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL ++ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVALCAAIESEIVELDDADKAEFLAEMGLEEPGLNRLIRAAYKLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+T++YDDF+A G A A+E G
Sbjct: 292 AWTIHVGDTAPQAAGVIHTDFERGFIRAQTISYDDFIACGGEAKAKEAG 340
>gi|118443130|ref|YP_878006.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium novyi
NT]
gi|118133586|gb|ABK60630.1| GTP-binding protein YchF [Clostridium novyi NT]
Length = 365
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 254/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYDTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF D++IVHV G +DP
Sbjct: 60 KKVYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFNDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGKP 235
D++ INLEL+ +DL+ IE+R EK A+ ++S +KE AE LEK+++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TARSARSGVKEAKAELPVLEKVKEHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS+ L E++ +K L+T KPI+YV+N+ E DL + N V +V A + S
Sbjct: 176 VRSLELTKEEQEIVKGFFLITSKPILYVSNICEDDLVSGNTENEFVKKVKEYAKEEDSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI G AP+AAG IH+D E+GFIRAE V+YDD V GS AAA+EKGL
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYDDLVECGSEAAAKEKGL 343
>gi|427405451|ref|ZP_18895656.1| GTP-binding protein YchF [Selenomonas sp. F0473]
gi|425709248|gb|EKU72285.1| GTP-binding protein YchF [Selenomonas sp. F0473]
Length = 368
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/349 (56%), Positives = 251/349 (71%), Gaps = 5/349 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+VAVPD RL+VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNIGVVAVPDARLNVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
P D+D+I EL +DL+ +EKR K+ K S+ AE AAL++++ L +G P
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRAAKVTKLLKSGSKEAK---AEAAALDRLKAVLDEGHP 178
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGR 294
AR L+ E+ ++ L LLT KPI+YVANV E + A NPHV V A+ +
Sbjct: 179 AREAELSAEEQALLRDLNLLTRKPILYVANVGEDEAATADAENPHVRAVREYAARTGAEV 238
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+SA++E E+ EL +EE +L LG+ ESGL LI ++LLGL+T+ T+GE E +AW
Sbjct: 239 VTVSARLEEEIAELDAEEAAVFLEELGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAW 298
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G TAP+AAG IH+DFE+GFIRAE V+Y+D V+ GS+AAAR+KGLV
Sbjct: 299 TITRGTTAPKAAGKIHTDFERGFIRAEIVSYEDLVSLGSVAAARDKGLV 347
>gi|359430509|ref|ZP_09221516.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter sp.
NBRC 100985]
gi|358234052|dbj|GAB03055.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter sp.
NBRC 100985]
Length = 363
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 254/377 (67%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDSRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GK
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAL---ATKAVLEKIQPLLDEGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH+ V LA++ +
Sbjct: 177 PARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVQKLAAEENAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G W L
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFIQYNGENGAKEAG--KW-----RLEG 346
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 347 KTYIVQDGDVLHFRFNV 363
>gi|299770489|ref|YP_003732515.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
oleivorans DR1]
gi|375134482|ref|YP_004995132.1| translation-associated GTPase [Acinetobacter calcoaceticus PHEA-2]
gi|424055859|ref|ZP_17793382.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
nosocomialis Ab22222]
gi|425742615|ref|ZP_18860719.1| GTP-binding protein YchF [Acinetobacter baumannii WC-487]
gi|445432517|ref|ZP_21439262.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC021]
gi|298700577|gb|ADI91142.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
oleivorans DR1]
gi|325121927|gb|ADY81450.1| translation-associated GTPase [Acinetobacter calcoaceticus PHEA-2]
gi|407438350|gb|EKF44894.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
nosocomialis Ab22222]
gi|425486441|gb|EKU52809.1| GTP-binding protein YchF [Acinetobacter baumannii WC-487]
gi|444758813|gb|ELW83303.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC021]
Length = 363
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 174 EGKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 340
>gi|260550653|ref|ZP_05824862.1| GTPase [Acinetobacter sp. RUH2624]
gi|260406364|gb|EEW99847.1| GTPase [Acinetobacter sp. RUH2624]
Length = 366
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 249/352 (70%), Gaps = 13/352 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VKPQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPL 174
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 175 LDEGKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAE 231
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +
Sbjct: 232 ENAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQ 291
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 292 EVRAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 343
>gi|300854238|ref|YP_003779222.1| GTP-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434353|gb|ADK14120.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 365
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/347 (54%), Positives = 255/347 (73%), Gaps = 7/347 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED++IVHV+G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDDNIVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+ +++R+EK+ K K+ D +SK+ E + K+++ L +G P
Sbjct: 120 IRDIETINLELIFSDLEVMDRRIEKVSKLAKSGDKESKV----EYEIMLKVKKHLEEGNP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
R++ LN+ E + +K LLT KP++YVAN++E DL N V +V A S
Sbjct: 176 VRTLDLNEDEAELVKSFFLLTTKPVLYVANISEDDLTSGNLENDFVKKVQEYAKVEGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA++E EL+ L +ER+E L G++E+GL LI S+Y LLGL ++ T+GEKE +AW
Sbjct: 236 VIISAKIEEELSSLEDDERLEMLKEYGLNEAGLDKLINSSYKLLGLMSFLTAGEKEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI+ G AP+AAG IH+D +KGFIRAE V+YD V GS +A+EKG
Sbjct: 296 TIKKGTKAPEAAGKIHTDIQKGFIRAEIVSYDKLVECGSETSAKEKG 342
>gi|417091646|ref|ZP_11956452.1| GTP-binding protein YchF [Streptococcus suis R61]
gi|353532952|gb|EHC02620.1| GTP-binding protein YchF [Streptococcus suis R61]
Length = 371
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/355 (54%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S +V ++ +
Sbjct: 174 KPVLEDGKSARTVEFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPESISYVQQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLIQYGSEKAVKEAG 348
>gi|389855716|ref|YP_006357959.1| GTP-binding protein YchF [Streptococcus suis ST1]
gi|353739434|gb|AER20441.1| GTP-binding protein YchF [Streptococcus suis ST1]
Length = 371
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/355 (54%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S +V ++ +
Sbjct: 174 KPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPDSISYVQQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLIQYGSEKAVKEAG 348
>gi|358466161|ref|ZP_09176015.1| GTP-binding protein YchF [Fusobacterium sp. oral taxon 370 str.
F0437]
gi|357069334|gb|EHI79258.1| GTP-binding protein YchF [Fusobacterium sp. oral taxon 370 str.
F0437]
Length = 364
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/373 (51%), Positives = 269/373 (72%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDGRLNELAKIVSPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D++++HV+G+VDP SD
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDSNVIHVSGQVDPISD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+D++ I+K +EK K +++K+KE E A L K+++ L + K ++
Sbjct: 125 IEVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMAVLPKVKKHLEEFKLVKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L + E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +S
Sbjct: 181 LDLTEDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVEAELQEMDDESKKEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKHSGWKGSQENGVL-------RLEGKEYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VHDGDLMEFLFNV 364
>gi|322420136|ref|YP_004199359.1| GTP-binding protein YchF [Geobacter sp. M18]
gi|320126523|gb|ADW14083.1| GTP-binding protein YchF [Geobacter sp. M18]
Length = 364
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 251/349 (71%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV+VPDPR+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVSVPDPRMDKLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+IL VVRCFE+ ++VHV+G V
Sbjct: 60 PERILPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFENENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D++VI EL +DLD +EKR+ + +K +A+ K KED E +K++ L G
Sbjct: 120 SPVRDIEVIQTELALADLDTVEKRLLRTEK-QARSGDKKAKEDVE--FCQKVKATLEKGL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R + + E+ ++ + L+T KP++YVANVAE DL G +P+V EV LA+ +G
Sbjct: 177 SPRDLAETEDEKLILRDMHLMTAKPVLYVANVAEDDL--EGKHPYVEEVRQLAAKEGNGV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I +EAE++EL +E+ +L +G++ESGL LIRS Y LLGL TYFT+G KE +AW
Sbjct: 235 VFICGSIEAEISELAGDEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G AP AAGVIHSDFEKGFIRAE ++Y DF+AAG + A+EKGL+
Sbjct: 295 TITRGTKAPGAAGVIHSDFEKGFIRAEVISYQDFIAAGGESGAKEKGLM 343
>gi|386585208|ref|YP_006081610.1| GTP-binding protein YchF [Streptococcus suis D12]
gi|353737354|gb|AER18362.1| GTP-binding protein YchF [Streptococcus suis D12]
Length = 371
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/355 (54%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S +V ++ +
Sbjct: 174 KPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPESISYVQQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLIQYGSEKAVKEAG 348
>gi|282849208|ref|ZP_06258593.1| GTP-binding protein YchF [Veillonella parvula ATCC 17745]
gi|416999957|ref|ZP_11940342.1| GTP-binding protein YchF [Veillonella parvula ACS-068-V-Sch12]
gi|282580912|gb|EFB86310.1| GTP-binding protein YchF [Veillonella parvula ATCC 17745]
gi|333976393|gb|EGL77261.1| GTP-binding protein YchF [Veillonella parvula ACS-068-V-Sch12]
Length = 368
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/352 (54%), Positives = 260/352 (73%), Gaps = 6/352 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV+G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR----AELPLLERIIEGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R+ L + E + IK+L LLT KP +YVAN++E +++D +N +V V A +
Sbjct: 176 EAKPVRAQGLEEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEYVKRVEEYAKNEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E
Sbjct: 236 AGIVVVSARIESEIAELSEEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGLV
Sbjct: 296 RAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLV 347
>gi|407718854|ref|YP_006796259.1| GTP-binding protein YchF [Leuconostoc carnosum JB16]
gi|407242610|gb|AFT82260.1| GTP-binding protein YchF [Leuconostoc carnosum JB16]
Length = 366
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 249/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D+D IN EL+ +DL+ IEKR K+ + K D ++K AE LEKI+ L G
Sbjct: 120 NPLDDIDTINTELILADLETIEKRYAKVARAAKGPDKEAK----AEFGVLEKIKPVLESG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K R++ N+ ++ +K L LLT KP++YVAN+AE D+ADP S+ H N++ + A+ +
Sbjct: 176 KSVRTIDFNEDDQKIVKGLFLLTAKPVLYVANLAEDDMADPESSKHFNDIKDFAATEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ +L E++ E+L GV E GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEEIAQLADEDKAEFLEMAGVEEPGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT +AGM APQAAGVIHSDFE+GFIRAET+A+ D GS+ A +E G
Sbjct: 296 WTFKAGMKAPQAAGVIHSDFERGFIRAETIAFQDLDQMGSVKAVKEAG 343
>gi|193213388|ref|YP_001999341.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobaculum
parvum NCIB 8327]
gi|193086865|gb|ACF12141.1| GTP-binding protein YchF [Chlorobaculum parvum NCIB 8327]
Length = 363
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/347 (57%), Positives = 245/347 (70%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPD RL L+ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDKRLGELASVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA +E VDIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFED+DIVHV GK+
Sbjct: 60 TPVIVPAVLEIVDIAGLVKGASKGEGLGNQFLSHIREVDAIIHVVRCFEDSDIVHVEGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ I EL+ +DLD +EKRM+KL+K K+ + D EKI L DG
Sbjct: 120 DPVDDIATIETELMLADLDSMEKRMDKLRKNARKEKELLPLVDLA----EKIIAGLGDGV 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R +T D ER+ +Q LLT KPI+Y ANVAE+DL P N + +V +A+ +
Sbjct: 176 PVRRITETDEEREQARQFFLLTSKPILYAANVAENDL--PEGNDYSAKVAEIAAANGANM 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA+ EA++ ELP EER E+L SLG+ SGL LIR Y LLGL YFT+G KE AW
Sbjct: 234 LVISAKAEADIAELPEEERPEFLESLGLEMSGLDRLIREAYDLLGLHNYFTAGVKEVHAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G AP+AA IH+DFEKGFIRAE +AYDD ++ GS A+E G
Sbjct: 294 TIRKGAAAPEAAAAIHTDFEKGFIRAEVIAYDDLISLGSEQKAKEAG 340
>gi|197119138|ref|YP_002139565.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter
bemidjiensis Bem]
gi|197088498|gb|ACH39769.1| GTP-dependent translational factor YchF, putative [Geobacter
bemidjiensis Bem]
Length = 364
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 250/349 (71%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIVAVPDPR+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVAVPDPRMDRLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+IL VVRCF++ ++VHV+G V
Sbjct: 60 PERMQPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D++VI EL +DLD +EKR+++ +K +A+ K KED + K++ L G
Sbjct: 120 SPVRDIEVIQTELALADLDTVEKRLQRTEK-QARSGDKKAKEDVDFCL--KVKSTLEQGL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R + + E+ ++ + L+T KP++YVANVAE DL G +P+V EV LA+ +G
Sbjct: 177 SPRDMAETEDEKLILRDMHLMTAKPVLYVANVAEDDL--EGKHPYVEEVRQLAAKEGNGV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I +EAE++EL EE+ +L +G++ESGL LIRS Y LLGL TYFT+G KE +AW
Sbjct: 235 VFICGSIEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G AP AAGVIHSDFEKGFIRAE +AY D++A+G A A+EKGL+
Sbjct: 295 TITKGTKAPGAAGVIHSDFEKGFIRAEVIAYQDYIASGGEAGAKEKGLM 343
>gi|291614808|ref|YP_003524965.1| GTP-binding protein YchF [Sideroxydans lithotrophicus ES-1]
gi|291584920|gb|ADE12578.1| GTP-binding protein YchF [Sideroxydans lithotrophicus ES-1]
Length = 363
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/349 (56%), Positives = 254/349 (72%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPR+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRMDELAKIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHV GKV
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +DL +E+ ++ + GK S K DA+K A LE++ L +
Sbjct: 120 DPISDIEVILTELALADLAVVERTIQ--RDGKKAKSGDK---DAQKLVAVLERLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR+ L D E+ IK LCLLT+KP +YV NV E +NPH++++ A+ +
Sbjct: 175 GKPARTFGLTDEEKLLIKPLCLLTVKPAMYVGNVLEDGFE---NNPHLDKLREHAAKEGA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A++EAEL +L ++ E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVALCAKIEAELADLDDADKKEFLADLGLDEPGLNRLIRTGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFEKGFIRA+T++Y DF+A G A A+EKG
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFEKGFIRAQTISYVDFIACGGEAGAKEKG 340
>gi|262368446|ref|ZP_06061775.1| translation-associated GTPase [Acinetobacter johnsonii SH046]
gi|262316124|gb|EEY97162.1| translation-associated GTPase [Acinetobacter johnsonii SH046]
Length = 367
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 255/377 (67%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DL+ + K + +L K + L A KA L+KI L +GK
Sbjct: 124 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAL---ATKAVLDKILPLLDEGK 180
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 181 PARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L +LG+ E GL +IR+ Y LLGL+TYFT+G +E +AW
Sbjct: 238 VPLCNQIEAEISLLEDEDRAEFLEALGMEEPGLNVVIRAGYGLLGLQTYFTAGVQEVRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G W L
Sbjct: 298 TVKVGATAPQAAGVIHTDFEKGFIRAECVAYNDFVQYNGEAGAKEAG--KW-----RLEG 350
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 351 KTYIVQDGDVLHFRFNV 367
>gi|88800288|ref|ZP_01115855.1| predicted GTPase, probable translation factor [Reinekea blandensis
MED297]
gi|88777003|gb|EAR08211.1| predicted GTPase, probable translation factor [Reinekea sp. MED297]
Length = 363
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/378 (49%), Positives = 264/378 (69%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPR ++ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTQAG-IDAENFPFCTIEPNTGVVPVPDPRQDKIAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK++ ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF++++++HV+ +V
Sbjct: 60 PQKSIATTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDNDNVIHVSNQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DL+ ++K++ KL KK K +D ++K D LEKI+ AL D
Sbjct: 120 DPASDIEVINTELALADLESVDKQLLKLQKKAKGQDKEAKRLAD----LLEKIKPALDDA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RSV L D E+ +KQ LLT KP +Y+ANV E +NP++++V +A++ +
Sbjct: 176 KPVRSVDLTDDEKADLKQFNLLTTKPTLYIANVNEDGFE---NNPYLDKVRAIAAEENAE 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++E+E+ EL +E+ E+LA LG+ E GL +IR+ Y LLGL+T+FT+G KE +A
Sbjct: 233 VVAICNKLESEIVELEDDEKAEFLADLGMEEPGLNRVIRAAYQLLGLQTFFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAP AAGVIH+DFEKGFIRAETVAYDDF+ + A+E G W L
Sbjct: 293 WTVKIGATAPNAAGVIHTDFEKGFIRAETVAYDDFITYNGESGAKEAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 346 GKDYIVKDGDVMHFRFNV 363
>gi|381195902|ref|ZP_09903244.1| GTP-binding protein YchF [Acinetobacter lwoffii WJ10621]
Length = 363
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 255/377 (67%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL +DL+ + K + +L K + L A KA L+KI L +GK
Sbjct: 120 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAL---ATKAVLDKILPLLDEGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 177 PARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + Q+EAE++ L E+R E+L +LG+ E GL +IR+ Y LLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEALGMEEPGLNVVIRAGYGLLGLQTYFTAGVQEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G W L
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECVAYNDFVQYNGEAGAKEAG--KW-----RLEG 346
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 347 KTYIVQDGDVLHFRFNV 363
>gi|254466908|ref|ZP_05080319.1| GTP-binding protein YchF [Rhodobacterales bacterium Y4I]
gi|206687816|gb|EDZ48298.1| GTP-binding protein YchF [Rhodobacterales bacterium Y4I]
Length = 365
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 246/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVAVPDARLDKLAEIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D +VI EL+ +DL+ IEKR L +K K D +++ ++ AA Q L DG
Sbjct: 121 DPVADAEVIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAAA----QAMLEDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++ + + K L LLT KP++YV NV ES+ + N H +V +A+ +
Sbjct: 177 KPARLVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVE--GNAHSAKVAEMAAAQGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L EE +L +G+SE+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAQIEEEISQLDPEEAQMFLEEMGLSEAGLDRLIRAGYDLLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AYDDFVA G A+E G
Sbjct: 295 WTIRQGTAAPQAAGVIHGDFEKGFIRAETIAYDDFVAMGGEQGAKEAG 342
>gi|171915805|ref|ZP_02931275.1| translation-associated GTPase [Verrucomicrobium spinosum DSM 4136]
Length = 371
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/351 (57%), Positives = 249/351 (70%), Gaps = 10/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAV KA+AAN+PFCTIEPN G+V VPD RL LS +S SQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVTRTRKAEAANYPFCTIEPNQGVVVVPDERLEALSKISGSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE +DI HV+G VDP
Sbjct: 62 KLIPAAIEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFESSDIHHVDGNVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGKP 235
D++VIN EL+ +D+D + KR K KD++ KE AE A EK+ L GKP
Sbjct: 122 VRDIEVINTELILADMDSVAKR----KSRSEKDAKRGNKEAQAEFALCEKLVPHLDAGKP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA----DPGSNPHVNEVMNL-ASDL 290
A ++ L D E +K LL+ KP IY NV+ES+LA +P +P V++V +
Sbjct: 178 AVTLELGDEEAKLLKSFFLLSGKPCIYACNVSESELAAASNEPDKHPLVSKVREYVSHAH 237
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V +SA +E+EL +L EE YL LGV +SG+ LI+S +SLLGL+TY T+GEKE
Sbjct: 238 AASAVVVSAAIESELIDLSDEEAAAYLTDLGVKDSGVSRLIKSVFSLLGLQTYLTTGEKE 297
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T+AWTI GM APQAAGVIHSDFE+GFI AE VA+ D GS A REKG
Sbjct: 298 TRAWTIVKGMKAPQAAGVIHSDFERGFIAAEIVAFTDLSELGSYAKCREKG 348
>gi|381184198|ref|ZP_09892850.1| GTP-binding protein YchF, partial [Listeriaceae bacterium TTU
M1-001]
gi|380315902|gb|EIA19369.1| GTP-binding protein YchF, partial [Listeriaceae bacterium TTU
M1-001]
Length = 329
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/335 (57%), Positives = 246/335 (73%), Gaps = 10/335 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDERLNKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCFED +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFEDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ ++KR+ EKL K K KD+ AE L K+++A
Sbjct: 120 DPLDDISTINLELILADLETVDKRIGRVEKLSKQKDKDAV------AEFNVLSKLKEAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR+V N+ E +K L LLT KP++YVANV+E D++DP SNP+V +V A+
Sbjct: 174 NDKPARAVEFNEEEEKIVKNLFLLTKKPVLYVANVSEEDVSDPASNPYVQKVQEFAASEG 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E++ E+L +LG+ ESGL LIRS YSLLGL TYFT+G +E
Sbjct: 234 SEVIAVCARAEEEIAELEDEDKREFLEALGIEESGLDKLIRSAYSLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYD 386
+AWT R GM APQ AG+IH+DFE+GFIRAE VAYD
Sbjct: 294 RAWTFRKGMKAPQCAGIIHTDFERGFIRAEVVAYD 328
>gi|253700100|ref|YP_003021289.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter sp. M21]
gi|251774950|gb|ACT17531.1| GTP-binding protein YchF [Geobacter sp. M21]
Length = 364
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 250/349 (71%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIVAVPDPR+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVAVPDPRMDRLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+IL VVRCF++ ++VHV+G V
Sbjct: 60 PERMQPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D++VI EL +DLD +EKR+++ +K +A+ K KED + K++ L G
Sbjct: 120 SPVRDIEVIQTELALADLDTVEKRLQRTEK-QARSGDKKAKEDVDFCL--KVKSTLEKGL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R + + E+ ++ + L+T KP++YVANVAE DL G +P+V EV LA+ +G
Sbjct: 177 SPRDLAETEDEKLILRDMHLMTAKPVLYVANVAEDDL--EGKHPYVEEVRQLAAKEGNGV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I +EAE++EL EE+ +L +G++ESGL LIRS Y LLGL TYFT+G KE +AW
Sbjct: 235 VFICGSIEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G AP AAGVIHSDFEKGFIRAE +AY D++A+G A A+EKGL+
Sbjct: 295 TITRGTKAPGAAGVIHSDFEKGFIRAEVIAYQDYIASGGEAGAKEKGLM 343
>gi|422414329|ref|ZP_16491288.1| GTP-binding protein YchF [Listeria innocua FSL S4-378]
gi|313616512|gb|EFR89383.1| GTP-binding protein YchF [Listeria innocua FSL S4-378]
Length = 366
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E++VE+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKVEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|426404604|ref|YP_007023575.1| GTP-dependent nucleic acid-binding protein EngD [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425861272|gb|AFY02308.1| GTP-dependent nucleic acid-binding protein EngD [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 366
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/347 (53%), Positives = 252/347 (72%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPDPR+ ++ K
Sbjct: 1 MALQVGIVGLPNVGKSTLFNALT-SAKAEAANYPFCTIDPNVGVVTVPDPRMDKITEFIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP ++EFVDIAG+VKGASQGEGLGN+FLSHIR+ D+I+ VVRCF+D +I+HV G V
Sbjct: 60 PQKVVPTTMEFVDIAGIVKGASQGEGLGNQFLSHIRQTDAIVHVVRCFDDPNIIHVAGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D+++IN EL+ +DLD +EKR+++ +K + KLK D E A +KI++AL G
Sbjct: 120 EPIRDIEIINTELLLADLDSVEKRLQRTEKQAKNSTDKKLKLDVEVA--KKIKEALGKGL 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARSVTL++ E+ ++K++ LLT KP++Y NV ++D A G N V A++ +
Sbjct: 178 PARSVTLDEMEQVALKEMHLLTAKPVLYAMNVNDADFA-AGGNDWTKAVEARAAEENNKT 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ I + +EAE+ LP EER ++L +LG E GL LIR Y+LLGL+TYFT+G E +AW
Sbjct: 237 ILICSAMEAEIALLPPEERKDFLDALGAEEPGLNRLIREAYTLLGLQTYFTAGVTEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIRA APQAAGVIH+DFE+GFI+AET +D S A ++ G
Sbjct: 297 TIRANTKAPQAAGVIHTDFERGFIKAETYHCEDLFKYKSEQAIKDAG 343
>gi|255319209|ref|ZP_05360426.1| GTP-binding protein YchF [Acinetobacter radioresistens SK82]
gi|421465005|ref|ZP_15913693.1| GTP-binding protein YchF [Acinetobacter radioresistens WC-A-157]
gi|255303602|gb|EET82802.1| GTP-binding protein YchF [Acinetobacter radioresistens SK82]
gi|400204267|gb|EJO35251.1| GTP-binding protein YchF [Acinetobacter radioresistens WC-A-157]
Length = 363
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 258/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRIIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA +
Sbjct: 174 EGKPARAADLSDDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRKLAEEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+E+E++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIESEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G W
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYNDFVQYNGEAGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + ++ + F++
Sbjct: 344 LEGKTYIVQDGDVMHFRFNV 363
>gi|433679032|ref|ZP_20510816.1| Obg-like ATPase 1 [Xanthomonas translucens pv. translucens DSM
18974]
gi|430815856|emb|CCP41361.1| Obg-like ATPase 1 [Xanthomonas translucens pv. translucens DSM
18974]
Length = 363
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 253/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGELARIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD+D I+ EL +DLD +EK R E+ KG KD+ ++ K AL K+Q AL
Sbjct: 120 DPISDIDTIDTELALADLDSVEKALNRAERSAKGGDKDAAAR------KPALAKLQAALA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGK RS L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+
Sbjct: 174 DGKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRARAATEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG++E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDTFLADLGLAEPGLNRVIRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+AY DF+ A ARE G
Sbjct: 291 RAWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYADFIKYKGEAGAREAG 340
>gi|357418245|ref|YP_004931265.1| GTP-binding protein YchF [Pseudoxanthomonas spadix BD-a59]
gi|355335823|gb|AER57224.1| GTP-binding protein YchF [Pseudoxanthomonas spadix BD-a59]
Length = 363
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLKALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP +VEFVDIAGLV GA+ GEGLGNKFLSHIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PHRVVPTAVEFVDIAGLVAGAASGEGLGNKFLSHIREVDAIAHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG K++ ++ K L ++Q AL
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR------KPVLARLQAALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DG PAR L++ +R ++ L LLT+KP++Y+ANV E + NPH++ V A
Sbjct: 174 DGIPARRAGLDEEQRALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRARAEQEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL +L +R +LA LG+ E GL +I + Y LLGL+TYFT+G +E
Sbjct: 231 ARVVPVSAAIEEELAQLDDADRDAFLADLGLEEPGLNRVIYAAYQLLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAP+AA VIH+DFEKGFIRAET++YDDF+ A +E G
Sbjct: 291 RAWTVKAGSTAPKAAAVIHTDFEKGFIRAETMSYDDFIKYKGEAGCKEAG 340
>gi|424741588|ref|ZP_18169932.1| GTP-binding protein YchF [Acinetobacter baumannii WC-141]
gi|422944646|gb|EKU39635.1| GTP-binding protein YchF [Acinetobacter baumannii WC-141]
Length = 363
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++
Sbjct: 174 EGKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 340
>gi|381400268|ref|ZP_09925245.1| GTP-binding protein YchF [Kingella kingae PYKK081]
gi|380834750|gb|EIC14578.1| GTP-binding protein YchF [Kingella kingae PYKK081]
Length = 363
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/349 (55%), Positives = 252/349 (72%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKSG-IEAANYPFCTIEPNVGIVEVPDPRMDELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++I+HV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK + L++GK S K DA+K A LEK+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--LREGKRAKSGDK---DAQKLVAILEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP R+ L+ E IK L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRAFGLDKEEMALIKPLFLLTAKPAMYVGNVAEDGFEN---NPHLARLQELAARENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL E+VE+LA +G++E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAALESEIAELNDAEKVEFLAEMGLAEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDF+A G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFIALGGEAKAKEAG 340
>gi|259415679|ref|ZP_05739600.1| GTP-binding protein YchF [Silicibacter sp. TrichCH4B]
gi|259348909|gb|EEW60671.1| GTP-binding protein YchF [Silicibacter sp. TrichCH4B]
Length = 365
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 247/350 (70%), Gaps = 11/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ +++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLEKLAEIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D D I EL+ +DL+ IEKR L KG K++Q + + AE A+ L
Sbjct: 121 DPVADADTIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAEAQAM------LE 174
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGKPAR V ++ ++ + L LLT KP++YV NV ES+ + N H +V +A+
Sbjct: 175 DGKPARLVEVDAEDQKAWTMLQLLTTKPVLYVCNVGESESVE--GNAHSTKVAEMAAAQG 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISAQ+E E+++L EE +L +G++E+GL LIR+ Y LL L TYFT G KE
Sbjct: 233 NAHVIISAQIEEEISQLEPEEAQMFLDEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEA 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTIR+G APQAAGVIH DFEKGFIRAET+AYDD+VA G A A+E G
Sbjct: 293 RAWTIRSGTAAPQAAGVIHGDFEKGFIRAETIAYDDYVACGGEAGAKEAG 342
>gi|303256351|ref|ZP_07342367.1| GTP-binding protein YchF [Burkholderiales bacterium 1_1_47]
gi|302861080|gb|EFL84155.1| GTP-binding protein YchF [Burkholderiales bacterium 1_1_47]
Length = 364
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 249/351 (70%), Gaps = 14/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MGLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRLAKLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I +VRCF D++IVHV G V
Sbjct: 60 PQRIVPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAIAHIVRCFNDDNIVHVAGHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK----AALEKIQQAL 230
DP D+ VIN+EL +DL ++K++ K K Q++ D E LEKI+ L
Sbjct: 120 DPLEDISVINMELALADLASVDKQLNKYTK------QARSGGDKEALKLVTVLEKIRPVL 173
Query: 231 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
+GKPARSV L+ E+ IKQLCLLTMKP++YVANV E + N + EV + +
Sbjct: 174 NEGKPARSVDLSKDEKAVIKQLCLLTMKPVMYVANVEEDGFEN---NALLEEVKAVGVEE 230
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
++ V + A++EAE+++LP EE+ +L +G+ E GL +IR+ Y LLGL TYFT+G KE
Sbjct: 231 KAPVVAVCAKIEAEISDLPDEEKQIFLEDIGMHEPGLNRVIRAAYQLLGLETYFTAGVKE 290
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAAGVIH+DFE+GFIRA+T++YDDFV A A+E G
Sbjct: 291 VRAWTIHKGDLAPQAAGVIHTDFERGFIRAQTISYDDFVQYKGEAGAKEAG 341
>gi|169796230|ref|YP_001714023.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AYE]
gi|260555292|ref|ZP_05827513.1| GTPase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|384142928|ref|YP_005525638.1| putative GTP-binding protein [Acinetobacter baumannii MDR-ZJ06]
gi|169149157|emb|CAM87036.1| putative GTP-binding protein [Acinetobacter baumannii AYE]
gi|260411834|gb|EEX05131.1| GTPase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|347593421|gb|AEP06142.1| putative GTP-binding protein [Acinetobacter baumannii MDR-ZJ06]
Length = 366
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 247/352 (70%), Gaps = 13/352 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VNPQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPL 174
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +GKPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 175 LDEGKPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAE 231
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +
Sbjct: 232 ENAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQ 291
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 292 EVRAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 343
>gi|56460040|ref|YP_155321.1| GTP-dependent nucleic acid-binding protein EngD [Idiomarina
loihiensis L2TR]
gi|56179050|gb|AAV81772.1| Predicted GTPase, probable translation factor [Idiomarina
loihiensis L2TR]
Length = 363
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/378 (50%), Positives = 260/378 (68%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPDPRL L+ +
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I VVRCFED++IVHV+G +
Sbjct: 60 PERVIPTTMEFVDIAGLVKGASKGEGLGNQFLANIRETDAIGHVVRCFEDDNIVHVSGGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL +DLD ++K + +L KK K DSQ+K AE A LEK++ AL +G
Sbjct: 120 DPADDIDTINTELALADLDSVDKSLYRLSKKAKGGDSQAK----AEIAVLEKLKPALDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARSV L+ ER +I+ LLT+KP +Y+ANV E +NPH+++V +A+ +
Sbjct: 176 QMARSVELSKDERATIRSYNLLTLKPTMYIANVNEDGFE---NNPHLDKVREIAATENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL ++ E+L+ LG E GL +IR Y LL L TYFT+G KE +A
Sbjct: 233 VVPVCAAIESEIAELDEADKEEFLSELGQDEPGLNRVIRGGYELLNLHTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAG IH+DFEKGFIRAE V YDD++A A++ G W L
Sbjct: 293 WTVKVGSTAPQAAGRIHTDFEKGFIRAEIVGYDDYIANNGEQGAKDAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 346 GKEYIVKDGDVIHFRFNV 363
>gi|241895292|ref|ZP_04782588.1| GTP-binding translation factor YchF [Weissella paramesenteroides
ATCC 33313]
gi|241871598|gb|EER75349.1| GTP-binding translation factor YchF [Weissella paramesenteroides
ATCC 33313]
Length = 367
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 251/349 (71%), Gaps = 7/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+D+DI HV+GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMD 232
DP D++ IN ELV +DL+ I+KR +++K AKD ++ AE A LE+++ AL
Sbjct: 120 DPLEDIETINTELVLADLESIDKRYSRVEKSAKSAKDKEAI----AELAVLEQLKPALEA 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARS+ ++ E+ I L LLT KP++YVANV+E D+ADP + + ++ A +
Sbjct: 176 GKPARSIDWDEDEQKIIHNLFLLTSKPVLYVANVSEDDMADPSESEYYQQIKQYAESEGA 235
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ ISA+ E E+ E+ E++ E++ G+SE GL LIR+ Y +L LRT+FT+G KET+
Sbjct: 236 DVIGISARAEEEIAEMDDEDKAEFMELQGISEPGLNRLIRAAYHMLDLRTFFTAGGKETR 295
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWT RAGM APQ AGVIHSDFE+GFIRAETV+++D S+ A +E G
Sbjct: 296 AWTFRAGMKAPQVAGVIHSDFERGFIRAETVSFEDLDKYASMKAIKEAG 344
>gi|262379712|ref|ZP_06072868.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262299169|gb|EEY87082.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 367
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 258/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRIIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 124 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 177
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA +
Sbjct: 178 EGKPARAADLSDDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRKLAEEEN 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+E+E++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 235 AIVVPLCNQIESEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEV 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G W
Sbjct: 295 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYNDFVQYNGEAGAKEAG--KW-----R 347
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + ++ + F++
Sbjct: 348 LEGKTYIVQDGDVMHFRFNV 367
>gi|166032702|ref|ZP_02235531.1| hypothetical protein DORFOR_02417 [Dorea formicigenerans ATCC
27755]
gi|346306750|ref|ZP_08848904.1| GTP-binding protein YchF [Dorea formicigenerans 4_6_53AFAA]
gi|166027059|gb|EDR45816.1| GTP-binding protein YchF [Dorea formicigenerans ATCC 27755]
gi|345908108|gb|EGX77776.1| GTP-binding protein YchF [Dorea formicigenerans 4_6_53AFAA]
Length = 366
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 264/350 (75%), Gaps = 8/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+++IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K K A++ ++ K E A LEKI+ L DG+ A
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTTK-VARNDKAAAK---ELALLEKIKAHLEDGRLA 175
Query: 237 RS--VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
++ ++ E + +K LLT KP+IY ANV+E DLAD G SN V V A+ +S
Sbjct: 176 KTFDAVEDEEEEEWLKSYNLLTYKPVIYAANVSEDDLADDGASNAGVQAVREYAAKEESE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ A++EAE++EL +E+ +L LG++ESGL LI+++Y LLGL +Y T+GE E +A
Sbjct: 236 VFVVCAEIEAEISELDDDEKKMFLEDLGLTESGLEKLIKASYKLLGLISYLTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G APQAAG IHSDFE+GFIRAE V+YDD +A GS AAA+EKGL+
Sbjct: 296 WTITEGTKAPQAAGKIHSDFERGFIRAEVVSYDDLIACGSHAAAKEKGLI 345
>gi|424715609|ref|YP_007016324.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes serotype 4b str. LL195]
gi|424014793|emb|CCO65333.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes serotype 4b str. LL195]
Length = 382
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 17 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 75
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 76 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 135
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 136 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 189
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 190 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASEN 249
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 250 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 309
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 310 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 361
>gi|167769139|ref|ZP_02441192.1| hypothetical protein ANACOL_00462 [Anaerotruncus colihominis DSM
17241]
gi|167668779|gb|EDS12909.1| GTP-binding protein YchF [Anaerotruncus colihominis DSM 17241]
Length = 365
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N AQ+AN+PFCTIEPNVG+VAVPD RL L+ L
Sbjct: 1 MKLGIVGLPNVGKSTLFNAIT-NAGAQSANYPFCTIEPNVGMVAVPDSRLDALAKLYDPD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLV+GAS+GEGLGNKFLSHIREVD+++ VVRCFED +IVHV+G++ P
Sbjct: 60 KFTPAVIEFVDIAGLVRGASKGEGLGNKFLSHIREVDAVVHVVRCFEDGEIVHVDGEIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
+ D++ I LEL+FSD+D +++++++ LK K D + D L +++ L +GKP
Sbjct: 120 RRDIETIGLELIFSDIDIVDRKIDRSLKAAKGGDKALAAQAD----TLRRLKAHLEEGKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGR 294
ARS + ER ++ + LL+ KP+IY AN++E D SN NEV +A+ +
Sbjct: 176 ARSFDCDGEERAALDDMPLLSAKPVIYAANMSEFDFTSGIKSNKFYNEVEEIAASEHAEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ I A++E E+T++P E+++ +L +G+ ESGL LI+ +Y LLGL +Y T+G++E +AW
Sbjct: 236 LPICAKIEEEITDMPPEDKLLFLEEMGLHESGLDRLIKKSYDLLGLISYLTAGKQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAG IHSDFEKGFIRAE V++D+ +A GS+AAA+EKGLV
Sbjct: 296 TITKGTKAPQAAGKIHSDFEKGFIRAEIVSFDELMACGSMAAAKEKGLV 344
>gi|253750929|ref|YP_003024070.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
SC84]
gi|253752828|ref|YP_003025968.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
P1/7]
gi|253754653|ref|YP_003027793.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
BM407]
gi|386578986|ref|YP_006075391.1| GTP-binding protein [Streptococcus suis JS14]
gi|386581053|ref|YP_006077457.1| GTP-binding protein [Streptococcus suis SS12]
gi|386587287|ref|YP_006083688.1| GTP-binding protein [Streptococcus suis A7]
gi|403060709|ref|YP_006648925.1| GTP-binding protein YchF [Streptococcus suis S735]
gi|251815218|emb|CAZ50782.1| putative GTP-binding protein [Streptococcus suis SC84]
gi|251817117|emb|CAZ54838.1| putative GTP-binding protein [Streptococcus suis BM407]
gi|251819073|emb|CAR44087.1| putative GTP-binding protein [Streptococcus suis P1/7]
gi|319757178|gb|ADV69120.1| GTP-binding protein [Streptococcus suis JS14]
gi|353733199|gb|AER14209.1| GTP-binding protein [Streptococcus suis SS12]
gi|354984448|gb|AER43346.1| GTP-binding protein [Streptococcus suis A7]
gi|402808035|gb|AFQ99526.1| GTP-binding protein YchF [Streptococcus suis S735]
Length = 371
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/355 (54%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELII 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP + +V ++ +
Sbjct: 174 KPVLEDGKSARTVEFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPEAISYVQQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLMTYGSEKAVKEAG 348
>gi|169633723|ref|YP_001707459.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii SDF]
gi|169152515|emb|CAP01489.1| putative GTP-binding protein [Acinetobacter baumannii]
Length = 366
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 247/352 (70%), Gaps = 13/352 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VNPQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPL 174
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L +GKPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 175 LDEGKPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAE 231
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +
Sbjct: 232 ENAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQ 291
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 292 EVRAWTLKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 343
>gi|299144033|ref|ZP_07037113.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518518|gb|EFI42257.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 364
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 255/348 (73%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+V VPD RL VLS +S S
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTKAG-AEAANYPFATIEPNIGVVNVPDERLKVLSEMSNSD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE+ +I+HV+G VDP
Sbjct: 60 KTVYTNIEFFDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+QIEKR+ K +K D KL + E L+K++ L GKPA
Sbjct: 120 LRDIENINLELIFSDLEQIEKRLSKTEKQLKGD--KKLLPEVE--LLKKLKDVLEKGKPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRV 295
R+V L++ E IK LL+ KPIIYVANV+E D+ ++ N V +V A+ V
Sbjct: 176 RNVELSEDEEKLIKNYALLSSKPIIYVANVSEDDISSNIDENKFVKKVREYATSQGDETV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISA +EAE+ L +E+ +L LG+ SGL LI+S+Y LLGL ++ T+G E++AWT
Sbjct: 236 VISAAIEAEIQSLDDDEKEMFLKELGLDSSGLDKLIKSSYKLLGLISFLTTGPMESRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G APQAAG IHSD E+GFI+AET++YDD ++ GS+A+AREKGL+
Sbjct: 296 IIKGSKAPQAAGKIHSDIERGFIKAETISYDDLISCGSMASAREKGLI 343
>gi|194334595|ref|YP_002016455.1| GTP-dependent nucleic acid-binding protein EngD [Prosthecochloris
aestuarii DSM 271]
gi|194312413|gb|ACF46808.1| GTP-binding protein YchF [Prosthecochloris aestuarii DSM 271]
Length = 363
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/347 (55%), Positives = 250/347 (72%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPN+G V VPD R+ L+ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNIGTVLVPDERMQELASIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ +PA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCF+D D++HV+GKV
Sbjct: 60 TPTIIPATLEIVDIAGLVRGASKGEGLGNQFLSHIREVDAIVHVVRCFDDGDVIHVHGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ I EL+ +DL+ +EKRM+KL+K K+ + L E A EK+ + L DG
Sbjct: 120 DPADDISTIETELMLADLESMEKRMDKLRKNARKEKE--LLPLVELA--EKVIKGLSDGI 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR++ D E+ Q LL+ KPI+Y ANV+E+DL P N + EV +A + S
Sbjct: 176 PARALMETDEEKALGSQFFLLSAKPILYAANVSENDL--PDGNAYTAEVQRIAEEAGSKM 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISAQ EAE+ ELP EER E+L SLG+ SGL +I+S Y LLGL TYFT+G KE +AW
Sbjct: 234 LIISAQTEAEIAELPEEERPEFLESLGLPMSGLDRIIQSAYDLLGLHTYFTAGVKEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G AP+AA IH+DFEKGFIRAE +AY+D + GS A+E G
Sbjct: 294 TIRKGAAAPEAAAAIHTDFEKGFIRAEVIAYNDMITYGSEQKAKEAG 340
>gi|254429140|ref|ZP_05042847.1| GTP-binding protein YchF [Alcanivorax sp. DG881]
gi|196195309|gb|EDX90268.1| GTP-binding protein YchF [Alcanivorax sp. DG881]
Length = 363
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/380 (51%), Positives = 254/380 (66%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPRL LS +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPVPDPRLDKLSAIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D +++HV+GKV
Sbjct: 60 PERVMPATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDENVIHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
P D+ VIN EL +DLD +EK R K KG+ KD++ L L+K+ AL
Sbjct: 120 SPLDDIAVINTELALADLDTVEKAHLRATKAAKGQDKDAKGLL------PVLDKVLPALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G PARSV L D ER +IK L LLT+KP +Y+ANV E D N ++ V LA
Sbjct: 174 EGDPARSVELTDDERKAIKSLNLLTLKPTMYIANVDEGGFED---NALLDAVRELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S V I A++E+E+ EL EE+ ++LA LG+ E GL +IR+ + LLGL+TYFT+G KE
Sbjct: 231 SSVVPICAKIESEIAELDDEEKADFLADLGMEEPGLNRVIRAGFDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT+R G TAPQAAGVIH+DFEKGFIRAE YDD++ A+E G W
Sbjct: 291 RAWTVRVGATAPQAAGVIHTDFEKGFIRAEVTGYDDYIDNNGEQGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 344 LEGKEYIVKDGDVVHFRFNV 363
>gi|421856340|ref|ZP_16288707.1| putative GTP-binding protein [Acinetobacter radioresistens DSM 6976
= NBRC 102413]
gi|403188279|dbj|GAB74908.1| putative GTP-binding protein [Acinetobacter radioresistens DSM 6976
= NBRC 102413]
Length = 363
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 257/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRIIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA +
Sbjct: 174 EGKPARAANLADDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRKLAEEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+E+E++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIESEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G W
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYNDFVQYNGEAGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + ++ + F++
Sbjct: 344 LEGKTYIVQDGDVMHFRFNV 363
>gi|184157841|ref|YP_001846180.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii ACICU]
gi|213157036|ref|YP_002319081.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB0057]
gi|215483685|ref|YP_002325906.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii AB307-0294]
gi|239504034|ref|ZP_04663344.1| translation-associated GTPase [Acinetobacter baumannii AB900]
gi|301346799|ref|ZP_07227540.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB056]
gi|301511723|ref|ZP_07236960.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB058]
gi|301596979|ref|ZP_07241987.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB059]
gi|332855472|ref|ZP_08435892.1| GTP-binding protein YchF [Acinetobacter baumannii 6013150]
gi|332866631|ref|ZP_08437118.1| GTP-binding protein YchF [Acinetobacter baumannii 6013113]
gi|332872482|ref|ZP_08440452.1| GTP-binding protein YchF [Acinetobacter baumannii 6014059]
gi|384131936|ref|YP_005514548.1| Putative GTP-binding protein [Acinetobacter baumannii 1656-2]
gi|385237232|ref|YP_005798571.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii TCDC-AB0715]
gi|387124201|ref|YP_006290083.1| GTP-binding protein YchF [Acinetobacter baumannii MDR-TJ]
gi|403677138|ref|ZP_10938944.1| GTP-binding protein YchF [Acinetobacter sp. NCTC 10304]
gi|407932550|ref|YP_006848193.1| GTP-binding protein YchF [Acinetobacter baumannii TYTH-1]
gi|416145965|ref|ZP_11600815.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB210]
gi|417547115|ref|ZP_12198201.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC032]
gi|417547745|ref|ZP_12198827.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-18]
gi|417553186|ref|ZP_12204256.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-81]
gi|417561522|ref|ZP_12212401.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC137]
gi|417563693|ref|ZP_12214567.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC143]
gi|417568098|ref|ZP_12218961.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC189]
gi|417573813|ref|ZP_12224667.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC-5]
gi|417578774|ref|ZP_12229607.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-17]
gi|417869761|ref|ZP_12514741.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH1]
gi|417873223|ref|ZP_12518099.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH2]
gi|417878635|ref|ZP_12523244.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH3]
gi|417883249|ref|ZP_12527503.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH4]
gi|421197872|ref|ZP_15655041.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC109]
gi|421204537|ref|ZP_15661658.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC12]
gi|421456205|ref|ZP_15905548.1| GTP-binding protein YchF [Acinetobacter baumannii IS-123]
gi|421536429|ref|ZP_15982675.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC30]
gi|421622055|ref|ZP_16062965.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC074]
gi|421624774|ref|ZP_16065638.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC098]
gi|421629437|ref|ZP_16070169.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC180]
gi|421632797|ref|ZP_16073442.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-13]
gi|421644923|ref|ZP_16085397.1| GTP-binding protein YchF [Acinetobacter baumannii IS-235]
gi|421648479|ref|ZP_16088882.1| GTP-binding protein YchF [Acinetobacter baumannii IS-251]
gi|421652988|ref|ZP_16093336.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC0162]
gi|421653438|ref|ZP_16093771.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-72]
gi|421657123|ref|ZP_16097398.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-83]
gi|421661764|ref|ZP_16101934.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC110]
gi|421668835|ref|ZP_16108868.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC087]
gi|421669988|ref|ZP_16109999.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC099]
gi|421676555|ref|ZP_16116462.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC065]
gi|421678646|ref|ZP_16118530.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC111]
gi|421687611|ref|ZP_16127332.1| GTP-binding protein YchF [Acinetobacter baumannii IS-143]
gi|421691054|ref|ZP_16130718.1| GTP-binding protein YchF [Acinetobacter baumannii IS-116]
gi|421697035|ref|ZP_16136614.1| GTP-binding protein YchF [Acinetobacter baumannii WC-692]
gi|421699521|ref|ZP_16139045.1| GTP-binding protein YchF [Acinetobacter baumannii IS-58]
gi|421703366|ref|ZP_16142830.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1122]
gi|421707089|ref|ZP_16146489.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1219]
gi|421788213|ref|ZP_16224522.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-82]
gi|421791155|ref|ZP_16227339.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-2]
gi|421798424|ref|ZP_16234446.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-21]
gi|421798584|ref|ZP_16234601.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC1]
gi|421804930|ref|ZP_16240826.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-694]
gi|421809204|ref|ZP_16245044.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC035]
gi|424052635|ref|ZP_17790167.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab11111]
gi|424060168|ref|ZP_17797659.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab33333]
gi|424064115|ref|ZP_17801600.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab44444]
gi|425748905|ref|ZP_18866887.1| GTP-binding protein YchF [Acinetobacter baumannii WC-348]
gi|425751752|ref|ZP_18869694.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-113]
gi|445406667|ref|ZP_21431944.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-57]
gi|445445763|ref|ZP_21443204.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-92]
gi|445458869|ref|ZP_21447409.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC047]
gi|445469493|ref|ZP_21451150.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC338]
gi|445475563|ref|ZP_21453453.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-78]
gi|445488674|ref|ZP_21458283.1| GTP-binding protein YchF [Acinetobacter baumannii AA-014]
gi|183209435|gb|ACC56833.1| predicted GTPase, probable translation factor [Acinetobacter
baumannii ACICU]
gi|193077132|gb|ABO11909.2| putative GTP-binding protein [Acinetobacter baumannii ATCC 17978]
gi|213056196|gb|ACJ41098.1| GTP-binding protein YchF [Acinetobacter baumannii AB0057]
gi|213987424|gb|ACJ57723.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii AB307-0294]
gi|322508156|gb|ADX03610.1| Putative GTP-binding protein [Acinetobacter baumannii 1656-2]
gi|323517730|gb|ADX92111.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii TCDC-AB0715]
gi|332727446|gb|EGJ58876.1| GTP-binding protein YchF [Acinetobacter baumannii 6013150]
gi|332734505|gb|EGJ65618.1| GTP-binding protein YchF [Acinetobacter baumannii 6013113]
gi|332739288|gb|EGJ70145.1| GTP-binding protein YchF [Acinetobacter baumannii 6014059]
gi|333366524|gb|EGK48538.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB210]
gi|342229633|gb|EGT94492.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH1]
gi|342231930|gb|EGT96722.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH2]
gi|342232279|gb|EGT97059.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH3]
gi|342236146|gb|EGU00688.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH4]
gi|385878693|gb|AFI95788.1| GTP-binding protein YchF [Acinetobacter baumannii MDR-TJ]
gi|395524104|gb|EJG12193.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC137]
gi|395554393|gb|EJG20395.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC189]
gi|395555449|gb|EJG21450.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC143]
gi|395566378|gb|EJG28021.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC109]
gi|395567912|gb|EJG28586.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-17]
gi|398325940|gb|EJN42097.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC12]
gi|400209381|gb|EJO40351.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC-5]
gi|400211303|gb|EJO42266.1| GTP-binding protein YchF [Acinetobacter baumannii IS-123]
gi|400385003|gb|EJP43681.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC032]
gi|400389494|gb|EJP52565.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-18]
gi|400393445|gb|EJP60491.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-81]
gi|404560768|gb|EKA66010.1| GTP-binding protein YchF [Acinetobacter baumannii WC-692]
gi|404563205|gb|EKA68415.1| GTP-binding protein YchF [Acinetobacter baumannii IS-116]
gi|404564411|gb|EKA69591.1| GTP-binding protein YchF [Acinetobacter baumannii IS-143]
gi|404571222|gb|EKA76282.1| GTP-binding protein YchF [Acinetobacter baumannii IS-58]
gi|404668120|gb|EKB36029.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab33333]
gi|404671192|gb|EKB39048.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab11111]
gi|404673496|gb|EKB41282.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab44444]
gi|407192377|gb|EKE63557.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1122]
gi|407192778|gb|EKE63953.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1219]
gi|407901131|gb|AFU37962.1| GTP-binding protein YchF [Acinetobacter baumannii TYTH-1]
gi|408503937|gb|EKK05689.1| GTP-binding protein YchF [Acinetobacter baumannii IS-235]
gi|408504405|gb|EKK06156.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC0162]
gi|408512791|gb|EKK14429.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-72]
gi|408515313|gb|EKK16901.1| GTP-binding protein YchF [Acinetobacter baumannii IS-251]
gi|408696569|gb|EKL42102.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC074]
gi|408700468|gb|EKL45919.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC098]
gi|408701423|gb|EKL46852.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC180]
gi|408707905|gb|EKL53184.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-13]
gi|408714265|gb|EKL59417.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-83]
gi|408715256|gb|EKL60384.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC110]
gi|409985680|gb|EKO41887.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC30]
gi|410378969|gb|EKP31578.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC087]
gi|410379622|gb|EKP32225.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC065]
gi|410386950|gb|EKP39412.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC099]
gi|410392209|gb|EKP44571.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC111]
gi|410394288|gb|EKP46624.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-21]
gi|410403651|gb|EKP55734.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-2]
gi|410403655|gb|EKP55737.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-82]
gi|410410315|gb|EKP62229.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-694]
gi|410412575|gb|EKP64432.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC1]
gi|410414988|gb|EKP66780.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC035]
gi|425489886|gb|EKU56187.1| GTP-binding protein YchF [Acinetobacter baumannii WC-348]
gi|425499759|gb|EKU65790.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-113]
gi|444760958|gb|ELW85386.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-92]
gi|444767510|gb|ELW91757.1| GTP-binding protein YchF [Acinetobacter baumannii AA-014]
gi|444774155|gb|ELW98243.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC338]
gi|444775278|gb|ELW99348.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC047]
gi|444778902|gb|ELX02902.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-78]
gi|444781314|gb|ELX05233.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-57]
gi|452953474|gb|EME58893.1| GTP-binding protein YchF [Acinetobacter baumannii MSP4-16]
Length = 363
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 246/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV------ATKAVLEKIQPLLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 174 EGKPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 231 AIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAG 340
>gi|189425648|ref|YP_001952825.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter lovleyi
SZ]
gi|189421907|gb|ACD96305.1| GTP-binding protein YchF [Geobacter lovleyi SZ]
Length = 364
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 248/349 (71%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPDPR+ LS + K
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNAITSAG-AESANYPFCTIDPNVGIVQVPDPRIDQLSAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK ++EFVDIAGLVKGAS GEGLGN+FL HIR VD+++ VVRCF+D+++VHV GKV
Sbjct: 60 PQKCQFTTIEFVDIAGLVKGASAGEGLGNQFLGHIRSVDAVVHVVRCFDDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+++IN EL SDLD +EK++ + +K A+ K KE E A E+I+ L GK
Sbjct: 120 SPADDIEIINTELALSDLDTLEKKVLRAEK-LARSGDKKAKE--EVALYERIKGLLEQGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R N+ ER ++ L LLT KP++YVANVAE DL G +P V +V +A+ +G
Sbjct: 177 KVRDCAENEDERIWLRDLHLLTAKPVLYVANVAEDDL--EGKHPFVAQVREIAAAEGAGV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I ++EAE+ EL +E++ +L +G+ ESGL LIR+ Y LLGL TYFT+G KE +AW
Sbjct: 235 VVICGKIEAEIAELDGDEKLAFLQEMGLQESGLDRLIRAGYDLLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAGVIHSDFEKGFIRAE + ++D++A + A+EKGL+
Sbjct: 295 TITRGTKAPQAAGVIHSDFEKGFIRAEVIGFEDYIACNGESGAKEKGLM 343
>gi|223933457|ref|ZP_03625442.1| GTP-binding protein YchF [Streptococcus suis 89/1591]
gi|302023113|ref|ZP_07248324.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
05HAS68]
gi|330831855|ref|YP_004400680.1| GTP-binding protein YchF [Streptococcus suis ST3]
gi|386583133|ref|YP_006079536.1| GTP-binding protein YchF [Streptococcus suis D9]
gi|223897895|gb|EEF64271.1| GTP-binding protein YchF [Streptococcus suis 89/1591]
gi|329306078|gb|AEB80494.1| GTP-binding protein YchF [Streptococcus suis ST3]
gi|353735279|gb|AER16288.1| GTP-binding protein YchF [Streptococcus suis D9]
Length = 371
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S ++ ++ +
Sbjct: 174 KPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPESISYIQKIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLMTYGSEKAVKEAG 348
>gi|304385708|ref|ZP_07368052.1| GTP-binding protein YchF [Pediococcus acidilactici DSM 20284]
gi|304328212|gb|EFL95434.1| GTP-binding protein YchF [Pediococcus acidilactici DSM 20284]
Length = 368
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 263/374 (70%), Gaps = 14/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++ IN+EL +DL+ +EKR+ K++ KG+ KD+ ++L A LEK+ L
Sbjct: 120 DPIEDIETINMELSLADLESVEKRLAKVQRAAKGRDKDALAEL------AVLEKLHPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--D 289
GKPAR+V ++ E +K L LLT KP++YVAN+AE D+ADP S+ + E+ + + D
Sbjct: 174 AGKPARAVEFDEAEMQIVKGLFLLTTKPVLYVANIAEDDMADPESSKYFKEIKDYVAEVD 233
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ + ISA+ E E+ EL +E+ E+L + G+ E GL LI+++Y+LLGL+T+FT+G K
Sbjct: 234 PDAQVLGISAETEQEIAELEDDEKAEFLEAEGIEEPGLNRLIQASYNLLGLQTFFTAGGK 293
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG--LVSWLH 407
ET+AWT + GMTAPQ AG+IHSDFE+GFIRAETV++DD GS+ A RE G +
Sbjct: 294 ETRAWTFKKGMTAPQTAGIIHSDFERGFIRAETVSFDDLDKYGSMQAVREAGRLRLEGKD 353
Query: 408 YHEHLASYKYFHWN 421
YH F +N
Sbjct: 354 YHVQDGDIIEFRFN 367
>gi|358067512|ref|ZP_09153990.1| GTP-binding protein YchF [Johnsonella ignava ATCC 51276]
gi|356694165|gb|EHI55828.1| GTP-binding protein YchF [Johnsonella ignava ATCC 51276]
Length = 365
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 254/349 (72%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A AAN+PFCTI+PNVG+VAVPD RL +L L KS+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AAAANYPFCTIDPNVGVVAVPDKRLKLLGDLYKSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA ++FVDIAGLVKGAS+GEGLGN+FLS+IRE D+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KVTPAVIDFVDIAGLVKGASKGEGLGNQFLSNIRECDAIVHVVRCFEDENVVHVDGTVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+F+D++ +E+R+ K K D + K + D +++++ L GKPA
Sbjct: 120 IRDIETINLELIFADIEILERRIAKTAKSAVNDKKLKKELD----IMKELKDILESGKPA 175
Query: 237 RSVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+ +D E D + L L+T P+IY ANVAE+DL D G +N +V EV LAS+ S
Sbjct: 176 KIFITDDDEISDFVSSLGLITYMPVIYAANVAENDLIDEGENNKYVKEVRKLASETSSKV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ A++E E+ +L +E+ EYL +LG+ ESGL LI ++Y LLGL ++ TSGE ET+AW
Sbjct: 236 FLVCAKIEEEIAQLDDDEKSEYLEALGIKESGLDKLISASYDLLGLLSFLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G AP AAG IHSDFE+GFIRAE + + D + GS AAA++KGL+
Sbjct: 296 TIKKGTKAPGAAGKIHSDFERGFIRAEVINFQDLIDCGSSAAAKDKGLM 344
>gi|403052551|ref|ZP_10907035.1| GTP-binding protein YchF [Acinetobacter bereziniae LMG 1003]
gi|445424458|ref|ZP_21436939.1| GTP-binding protein YchF [Acinetobacter sp. WC-743]
gi|444754509|gb|ELW79123.1| GTP-binding protein YchF [Acinetobacter sp. WC-743]
Length = 363
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/378 (50%), Positives = 256/378 (67%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ IN EL +DL+ + K + +L K K D ++ A KA L+KI L +G
Sbjct: 120 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAV----ATKAVLDKILPLLDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ L+D ER ++ L+T+KP +Y+ANVAE +NPH+ V LA++ +
Sbjct: 176 KPARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFE---NNPHLEAVKKLAAEENAI 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + Q+EAE++ L E+R E+L +LG+ E GL +IR+ YSLLGL+TYFT+G +E +A
Sbjct: 233 VVPLCNQIEAEISLLDDEDRAEFLEALGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAGVIH+DFEKGFIRAE +AYDDF+ A+E G W L
Sbjct: 293 WTVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFIQFNGENGAKEAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + +L + F++
Sbjct: 346 GKTYIVQDGDVLHFRFNV 363
>gi|433449079|ref|ZP_20411944.1| GTP-binding protein YchF [Weissella ceti NC36]
gi|429539468|gb|ELA07505.1| GTP-binding protein YchF [Weissella ceti NC36]
Length = 366
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/347 (53%), Positives = 251/347 (72%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQELVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+V++I+ VVR F+D+DI HV+G V
Sbjct: 60 AEKLVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ IN EL+ +DL+ ++KR+ K++K K ++ + AE A L +I+ AL GK
Sbjct: 120 DPLDDIETINTELILADLEAVDKRISKVEKLAKKGDKASV---AEFAVLSEIKPALEAGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RS+ N+ ++ ++ L LLT KP++YVANVAE D+ADP + + ++ A+ +
Sbjct: 177 PVRSLEFNEDDQAVVQGLFLLTSKPVLYVANVAEDDMADPEAGSYYQQIAEYAAAENAQV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA+ E E+ E+ E++ E++ G++E GL LIRS Y LL LRTYFT+G KET+AW
Sbjct: 237 IGISARAEEEIAEMDDEDKAEFMELQGITEPGLNRLIRSAYHLLDLRTYFTAGGKETRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T RAGM APQ AGVIHSDFE+GFIRAETVA+ D GS+ A +E G
Sbjct: 297 TFRAGMKAPQTAGVIHSDFERGFIRAETVAFADLDEFGSMKAVKEAG 343
>gi|114704352|ref|ZP_01437260.1| hypothetical protein FP2506_05446 [Fulvimarina pelagi HTCC2506]
gi|114539137|gb|EAU42257.1| hypothetical protein FP2506_05446 [Fulvimarina pelagi HTCC2506]
Length = 367
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 250/352 (71%), Gaps = 13/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPD RL ++G++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGDVAVPDSRLKNIAGIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV GK+
Sbjct: 61 SANVIPTRITFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDEDIAHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D + + EL+ +DL+ +E+R+ +K GK K++ ++L +EK +AL
Sbjct: 121 DPVADAETVETELMIADLESLERRVVNTRKKATGKDKEALAQLP------VMEKALEALN 174
Query: 232 DGKPARSVT--LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
DGKP R++ L+ +R +++ L LLT KP++YV NVAE+D A N H +V +A
Sbjct: 175 DGKPVRTIVEDLDPEDRRTLRALNLLTSKPVLYVCNVAENDAAT--GNHHAADVAKMAES 232
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+G V ISA +EAE+ +L E E+L ++G++E GL LIR+ Y LL L TYFT+G K
Sbjct: 233 QGAGAVVISAAIEAEIAQLDEAETSEFLETMGLTEPGLDRLIRAGYDLLDLITYFTAGPK 292
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWT+ G APQAAGVIH+DFEKGFIRA+T+AYDD+V G A++ G
Sbjct: 293 ETRAWTVHNGAKAPQAAGVIHTDFEKGFIRAQTIAYDDYVTLGGEVPAKDAG 344
>gi|375088033|ref|ZP_09734376.1| GTP-binding protein YchF [Dolosigranulum pigrum ATCC 51524]
gi|374563300|gb|EHR34620.1| GTP-binding protein YchF [Dolosigranulum pigrum ATCC 51524]
Length = 366
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 252/350 (72%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGVVEVPDSRLNRLTELVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I VVRCF+D +I HV G+V
Sbjct: 60 PNKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICHVVRCFDDGNITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP++D++ INLEL+ +DLD ++KR+EK K KGK ++ L LEK++ AL
Sbjct: 120 DPEADMNTINLELILADLDSVDKRLEKTKRAAKGKDPEALELL------PVLEKLKPALE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DG PAR++ ++ E+ ++ L LL+ KP++Y+ANVAE +A+P + H V LA +
Sbjct: 174 DGIPARALDWSEEEKPILRSLFLLSSKPVLYIANVAEEHVANPEESDHFQTVKRLADEEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +E E+ L EER +L L + E GL +IR +Y+LL L TYFT+G KE
Sbjct: 234 AEVVGISAAIEEEIAALDDEERDMFLEDLEIKEPGLHRVIRKSYNLLNLGTYFTAGVKEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT + GMTAPQAAG+IHSDF++GFIRAET+A+DD+ GS A RE G
Sbjct: 294 RAWTFKKGMTAPQAAGIIHSDFQRGFIRAETIAFDDYDRLGSEKAVREAG 343
>gi|71730263|gb|EAO32348.1| Conserved hypothetical protein 92 [Xylella fastidiosa Ann-1]
Length = 363
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE +I+HV GKV
Sbjct: 60 PQKLLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGEIIHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D+++I+ EL+ +DLD +EK R+ + KG K++ ++ K+ LE++Q AL
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRIMRAAKGGGKEAIAR------KSVLERLQVALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + AS
Sbjct: 174 EGKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLEALRVRASSDN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE
Sbjct: 231 AQLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G
Sbjct: 291 RAWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAG 340
>gi|423101198|ref|ZP_17088902.1| GTP-binding protein YchF [Listeria innocua ATCC 33091]
gi|370792313|gb|EHN60190.1| GTP-binding protein YchF [Listeria innocua ATCC 33091]
Length = 376
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 11 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 69
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 70 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 129
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 130 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 183
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 184 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEKDVSSPDDNKYVQQVREFAASEN 243
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 244 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 303
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 304 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 355
>gi|430004267|emb|CCF20058.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Rhizobium sp.]
Length = 367
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/375 (50%), Positives = 259/375 (69%), Gaps = 15/375 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQKLAQIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGNKFL++IREVD+I+ V+RCFED DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAIVHVLRCFEDTDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D + I EL+ +DL+ +E+R+E+ +K GK K+S ++L +E + + L
Sbjct: 121 DPVGDAETIETELMLADLESLERRVEQTRKRATGKDKESLAQLP------VMEAVIKLLQ 174
Query: 232 DGKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
DGKPAR + T++ E D +K L LLT P++YV NVAE+D A N H V +A++
Sbjct: 175 DGKPARLLLKTMSPEEIDILKGLNLLTSHPVLYVCNVAEADAAT--GNAHTEAVSKMAAE 232
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISA +EAE+ +LP +E E+L++LG+ E+GL LIR+ Y+LL L TYFT G K
Sbjct: 233 QGAECVIISAAIEAEVAQLPEDEATEFLSALGLEEAGLDRLIRAGYNLLDLITYFTVGPK 292
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE--KGLVSWLH 407
ET+AWTI G APQAAGVIH+DFE+GFIRA T+ YDD++A A+E KG
Sbjct: 293 ETRAWTIVRGTKAPQAAGVIHTDFERGFIRAFTIGYDDYIAYKGEVGAKEAGKGRDEGKE 352
Query: 408 YHEHLASYKYFHWNS 422
Y H +F +N+
Sbjct: 353 YVVHDGDVIHFRFNT 367
>gi|224003407|ref|XP_002291375.1| GTP binding protein [Thalassiosira pseudonana CCMP1335]
gi|220973151|gb|EED91482.1| GTP binding protein [Thalassiosira pseudonana CCMP1335]
Length = 363
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 250/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ IVGLPNVGKSTLFNA+ E A+AAN+PFCTIEPN GIV VPD RL VL ++
Sbjct: 1 MKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNTGIVEVPDIRLEVLGKINN 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VP ++EFVD+AGLVKGAS GEGLGN+FL+ IR+ D+I+ VVRCFED +++HV+G V
Sbjct: 61 SVKVVPTTLEFVDVAGLVKGASDGEGLGNQFLATIRQCDAIVHVVRCFEDENVIHVDGTV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D ++INLEL +DL Q+EKRM K+KK + DS AE +ALEK+ L + +
Sbjct: 121 DPVRDAELINLELALADLAQVEKRMLKVKKERKMDS-------AEGSALEKVAAVLNNDE 173
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L++ E SI+ L LLT K +IY ANVA+SDLA N + A+ +
Sbjct: 174 PARNADLSEEEDASIRGLGLLTRKKMIYAANVADSDLAT--GNDMSERLAEQAAKEGATM 231
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVS--ESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V +SAQVEAEL +L +++R ++L SLGV+ + GL +IR YS+L L+TYFTSG ET+
Sbjct: 232 VLVSAQVEAELVDLDADDRADFLDSLGVTIDDCGLRRVIREAYSILNLQTYFTSGPTETR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G APQAAGVIH DFE+GFIRAET++Y+D V GS A +++G
Sbjct: 292 AWTIGKGWKAPQAAGVIHGDFERGFIRAETISYEDLVDCGSEAEVKKQG 340
>gi|341820468|emb|CCC56748.1| GTP-binding translation factor YchF [Weissella thailandensis
fsh4-2]
Length = 367
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/347 (53%), Positives = 252/347 (72%), Gaps = 3/347 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+D+DI HV+GK+
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ IN ELV +DL+ I+KR +++K AK ++ K AE A LE+++ AL GK
Sbjct: 120 DPLEDIETINTELVLADLESIDKRYSRVEK-SAKSAKDK-DAIAELAVLEQLKPALEAGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ ++ E+ I L LLT KP++YVANV+E D+ADP + + ++ A +G
Sbjct: 178 PARSIDWDEDEQKIIHDLFLLTSKPVLYVANVSEDDMADPSESEYYQQIQQYAESEGAGV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA+ E E+ E+ E++ E++ G++E GL LIR+ Y +L LRT+FT+G KET+AW
Sbjct: 238 IGISARAEEEIAEMDDEDKAEFMELQGITEPGLNRLIRAAYHMLDLRTFFTAGGKETRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T RAGM APQ AGVIHSDFE+GFIRAETV+++D S+ A +E G
Sbjct: 298 TFRAGMKAPQVAGVIHSDFERGFIRAETVSFEDLDNYVSMKAIKEAG 344
>gi|253580154|ref|ZP_04857421.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848673|gb|EES76636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 365
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLKLLGDFYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++++HV+G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNVIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K+ K D ++ + D L+K++ L DGK A
Sbjct: 120 IRDIETINLELIFSDLEILERRIAKVTKTARMDKEAAKELD----FLQKVKTHLEDGKMA 175
Query: 237 RSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
++ + N+ E + LLT KP+IY ANVAE DLAD G SN HV V A++ S
Sbjct: 176 ITMEMENEDEEAWMSTYNLLTWKPVIYAANVAEGDLADDGESNSHVQAVRKYAAEQNSEI 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I A++E E++EL +E+ +L LG++ESGL L++++Y LLGL ++ TSGE ET+AW
Sbjct: 236 FVICAEIEEEISELDDDEKKMFLEDLGLTESGLEKLVKASYHLLGLMSFLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGLV
Sbjct: 296 TIKIGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLV 344
>gi|160880614|ref|YP_001559582.1| GTP-binding protein YchF [Clostridium phytofermentans ISDg]
gi|160429280|gb|ABX42843.1| GTP-binding protein YchF [Clostridium phytofermentans ISDg]
Length = 365
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 256/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PN+GIV VPD RL VLS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNIGIVPVPDVRLKVLSDLYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +I+HV+G VDP
Sbjct: 60 KILPAAIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDGNIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R K+ KG D L ++AE L +++ L DGK A
Sbjct: 120 LRDIETINLELIFSDLEILERRNSKVVKGAKNDKL--LAKEAE--LLTRLKAHLEDGKLA 175
Query: 237 RS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+ VT ++ E + + LLT KP+IY ANV + +LAD N V +V A + S
Sbjct: 176 KGFVTEDEEELEMLSSYNLLTYKPVIYAANVKDDELADDAKDNQFVGQVREFAKNENSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+E E+ EL +E+ +L LG++ESGL LIR++Y +LGL +Y T+G KET+AW
Sbjct: 236 FVICAQIEQEIAELDDDEKKMFLEELGLTESGLEKLIRASYHILGLISYLTAGPKETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI GM APQAAG IH+DFE+GFIRAE V+YD+ V GS +A+EKGLV
Sbjct: 296 TITKGMKAPQAAGKIHTDFERGFIRAEIVSYDNLVGCGSFNSAKEKGLV 344
>gi|110833376|ref|YP_692235.1| GTP-dependent nucleic acid-binding protein EngD [Alcanivorax
borkumensis SK2]
gi|110646487|emb|CAL15963.1| GTP-binding protein YchF [Alcanivorax borkumensis SK2]
Length = 363
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 255/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPRL L +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPVPDPRLDKLEAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D +++HV+GKV
Sbjct: 60 PERVLPATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDENVIHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
P D+ VIN EL +DLD +EK R K KG+ KD++ L L+K+ AL
Sbjct: 120 SPLDDIAVINTELALADLDTVEKAHFRATKAAKGQDKDAKGLL------PVLDKVLPALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G PARSV L D ER +IK L LLT+KP +Y+ANV E D N ++ V +LA
Sbjct: 174 EGDPARSVELTDDERKAIKSLNLLTLKPTMYIANVDEGGFED---NALLDAVRDLAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S V I A++E+E+ EL EE+ ++LA LG+ E GL +IR+ + LLGL+TYFT+G KE
Sbjct: 231 SSVVPICAKIESEIAELDDEEKADFLADLGMEEPGLNRVIRAGFDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT+R G TAPQAAGVIH+DFEKGFIRAE Y+D++A A+E G W
Sbjct: 291 RAWTVRVGATAPQAAGVIHTDFEKGFIRAEVTGYEDYIANNGEQGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 344 LEGKEYIVKDGDVVHFRFNV 363
>gi|16801978|ref|NP_472246.1| GTP-dependent nucleic acid-binding protein EngD [Listeria innocua
Clip11262]
gi|16804816|ref|NP_466301.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes EGD-e]
gi|46908969|ref|YP_015358.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092669|ref|ZP_00230456.1| GTP-binding protein YchF [Listeria monocytogenes str. 4b H7858]
gi|47095586|ref|ZP_00233194.1| GTP-binding protein YchF [Listeria monocytogenes str. 1/2a F6854]
gi|217966014|ref|YP_002351692.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes HCC23]
gi|226225332|ref|YP_002759439.1| GTP-binding protein [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824852|ref|ZP_05229853.1| translation-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|254827347|ref|ZP_05232034.1| translation-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|254851914|ref|ZP_05241262.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-503]
gi|254913034|ref|ZP_05263046.1| GTP-binding protein YchF [Listeria monocytogenes J2818]
gi|254930944|ref|ZP_05264303.1| translation-associated GTPase [Listeria monocytogenes HPB2262]
gi|254937415|ref|ZP_05269112.1| translation-associated GTPase [Listeria monocytogenes F6900]
gi|254992807|ref|ZP_05274997.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J2-064]
gi|255016987|ref|ZP_05289113.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL F2-515]
gi|255025148|ref|ZP_05297134.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J2-003]
gi|255029443|ref|ZP_05301394.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes LO28]
gi|255521559|ref|ZP_05388796.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J1-175]
gi|290891961|ref|ZP_06554958.1| translation-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|300763460|ref|ZP_07073458.1| GTP-binding protein YchF [Listeria monocytogenes FSL N1-017]
gi|386009560|ref|YP_005927838.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L99]
gi|386028186|ref|YP_005948962.1| putative GTP-binding protein [Listeria monocytogenes M7]
gi|386045085|ref|YP_005963890.1| GTP-binding protein YchF [Listeria monocytogenes 10403S]
gi|386048512|ref|YP_005966844.1| GTP-binding protein YchF [Listeria monocytogenes J0161]
gi|386051762|ref|YP_005969753.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-561]
gi|386054966|ref|YP_005972524.1| GTP-binding protein YchF [Listeria monocytogenes Finland 1998]
gi|386733482|ref|YP_006206978.1| GTP-binding protein YchF [Listeria monocytogenes 07PF0776]
gi|404282355|ref|YP_006683253.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2755]
gi|404285288|ref|YP_006686185.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2372]
gi|404288168|ref|YP_006694754.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|404409162|ref|YP_006691877.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2376]
gi|404412029|ref|YP_006697617.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC5850]
gi|404414856|ref|YP_006700443.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC7179]
gi|405751128|ref|YP_006674594.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
ATCC 19117]
gi|405754001|ref|YP_006677466.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2378]
gi|405759844|ref|YP_006689120.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2479]
gi|406705522|ref|YP_006755876.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L312]
gi|417313986|ref|ZP_12100692.1| GTP-binding protein YchF [Listeria monocytogenes J1816]
gi|417318811|ref|ZP_12105374.1| GTP-binding protein YchF [Listeria monocytogenes J1-220]
gi|422417264|ref|ZP_16494221.1| GTP-binding protein YchF [Listeria innocua FSL J1-023]
gi|424824532|ref|ZP_18249545.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes str. Scott A]
gi|16412279|emb|CAD00992.1| lmo2779 [Listeria monocytogenes EGD-e]
gi|16415460|emb|CAC98144.1| lin2919 [Listeria innocua Clip11262]
gi|46882242|gb|AAT05535.1| GTP-binding protein YchF [Listeria monocytogenes serotype 4b str.
F2365]
gi|47016016|gb|EAL06941.1| GTP-binding protein YchF [Listeria monocytogenes str. 1/2a F6854]
gi|47018964|gb|EAL09710.1| GTP-binding protein YchF [Listeria monocytogenes str. 4b H7858]
gi|217335284|gb|ACK41078.1| GTP-binding protein YchF [Listeria monocytogenes HCC23]
gi|225877794|emb|CAS06509.1| Putative GTP-binding protein [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258599725|gb|EEW13050.1| translation-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|258605210|gb|EEW17818.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-503]
gi|258610017|gb|EEW22625.1| translation-associated GTPase [Listeria monocytogenes F6900]
gi|290558555|gb|EFD92072.1| translation-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|293582491|gb|EFF94523.1| translation-associated GTPase [Listeria monocytogenes HPB2262]
gi|293591034|gb|EFF99368.1| GTP-binding protein YchF [Listeria monocytogenes J2818]
gi|293594094|gb|EFG01855.1| translation-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|300515737|gb|EFK42786.1| GTP-binding protein YchF [Listeria monocytogenes FSL N1-017]
gi|307572370|emb|CAR85549.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L99]
gi|313621924|gb|EFR92583.1| GTP-binding protein YchF [Listeria innocua FSL J1-023]
gi|328468257|gb|EGF39263.1| GTP-binding protein YchF [Listeria monocytogenes J1816]
gi|328469124|gb|EGF40072.1| GTP-binding protein YchF [Listeria monocytogenes J1-220]
gi|332313212|gb|EGJ26307.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes str. Scott A]
gi|336024767|gb|AEH93904.1| putative GTP-binding protein [Listeria monocytogenes M7]
gi|345535503|gb|AEO04944.1| GTP-binding protein YchF [Listeria monocytogenes J0161]
gi|345538319|gb|AEO07759.1| GTP-binding protein YchF [Listeria monocytogenes 10403S]
gi|346425608|gb|AEO27133.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-561]
gi|346647617|gb|AEO40242.1| GTP-binding protein YchF [Listeria monocytogenes Finland 1998]
gi|384392240|gb|AFH81310.1| GTP-binding protein YchF [Listeria monocytogenes 07PF0776]
gi|404220328|emb|CBY71692.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
ATCC 19117]
gi|404223201|emb|CBY74564.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2378]
gi|404228990|emb|CBY50395.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2755]
gi|404231855|emb|CBY53259.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC5850]
gi|404234790|emb|CBY56193.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2372]
gi|404237726|emb|CBY59128.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2479]
gi|404240555|emb|CBY61956.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC7179]
gi|404243311|emb|CBY64711.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2376]
gi|404247097|emb|CBY05322.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406362552|emb|CBY68825.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L312]
Length = 366
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|85713255|ref|ZP_01044280.1| Predicted GTPase, probable translation factor [Idiomarina baltica
OS145]
gi|85692924|gb|EAQ30897.1| Predicted GTPase, probable translation factor [Idiomarina baltica
OS145]
Length = 363
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/378 (50%), Positives = 258/378 (68%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+VAVPDPRL VL +
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVAVPDPRLDVLESIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I VVRCFED++IVHV+G +
Sbjct: 60 PQKVIPTTMEFVDIAGLVKGASKGEGLGNQFLANIRETDAIGHVVRCFEDDNIVHVSGGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D+D IN EL +DLD ++K + +L KK K D+Q+K AE A LEK++ AL +G
Sbjct: 120 NPADDIDTINTELALADLDSVDKSLHRLGKKAKGGDAQAK----AEIAVLEKLKPALDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARSV L D E+ I+ LLT+KP +Y+ANV E +NPH+ V +A+ +
Sbjct: 176 EMARSVHLTDDEKAVIRSYNLLTLKPTMYIANVNEDGFE---NNPHLETVRQIAAKENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL +++ +L LG +E GL +IR Y LL L+TYFT+G KE +A
Sbjct: 233 VVPVCAAIESEIAELDDDDKAAFLEELGQAEPGLNRVIRGGYQLLNLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G +APQAAG IH+DFEKGFIRAE V YDD+V A++ G W L
Sbjct: 293 WTVKIGASAPQAAGRIHTDFEKGFIRAEVVGYDDYVEYNGEQGAKDAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 346 GKEYIVKDGDVIHFRFNV 363
>gi|71275256|ref|ZP_00651543.1| Conserved hypothetical protein 92 [Xylella fastidiosa Dixon]
gi|170731254|ref|YP_001776687.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
M12]
gi|71164065|gb|EAO13780.1| Conserved hypothetical protein 92 [Xylella fastidiosa Dixon]
gi|71728033|gb|EAO30244.1| Conserved hypothetical protein 92 [Xylella fastidiosa Ann-1]
gi|167966047|gb|ACA13057.1| GTP-binding protein [Xylella fastidiosa M12]
Length = 363
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/350 (53%), Positives = 255/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE +I+HV GKV
Sbjct: 60 PQKLLPTAIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGEIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D+++I+ EL+ +DLD +EK R+ + KG K++ ++ K+ LE++Q AL
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRIMRAAKGGGKEAIAR------KSVLERLQVALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + A+
Sbjct: 174 EGKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLETLRVRAASDN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE
Sbjct: 231 AQLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G
Sbjct: 291 RAWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAG 340
>gi|255263027|ref|ZP_05342369.1| GTP-binding protein YchF [Thalassiobium sp. R2A62]
gi|255105362|gb|EET48036.1| GTP-binding protein YchF [Thalassiobium sp. R2A62]
Length = 365
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 245/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDARLDKLAAIAS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGASQGEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQVIPTRMTFVDIAGLVKGASQGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D I EL+ +DL+ IEKRM+ L +K + D ++ +E+ L+K Q AL DG
Sbjct: 121 NPVEDASTIETELMLADLESIEKRMQGLVRKVRGGDKEAVQQEE----LLKKAQAALEDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++D + + K L LLT KP++YV NV E + A N H V +A+ +
Sbjct: 177 KPARVVEVDDEDLKAWKMLQLLTTKPVLYVCNVGEDESAT--GNAHSTAVAEMAAAEGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L ++E +L+ +G+ E GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAQIEEEISQLEADEAKMFLSEMGLDEPGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G +AP+AAGVIH DFEKGFIRAET+AYD+FV G A+E G
Sbjct: 295 WTIREGTSAPKAAGVIHGDFEKGFIRAETIAYDEFVTLGGEQPAKEAG 342
>gi|405756911|ref|YP_006680375.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2540]
gi|404226111|emb|CBY77473.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2540]
Length = 366
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDYRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|394990506|ref|ZP_10383338.1| GTP-binding protein YchF [Sulfuricella denitrificans skB26]
gi|393790771|dbj|GAB72977.1| GTP-binding protein YchF [Sulfuricella denitrificans skB26]
Length = 363
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVGIV VPDPR+ L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNAITSAGIA-AENYPFCTIEPNVGIVEVPDPRIDALTVIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK A +EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE+ D++HV GK+
Sbjct: 60 PQKVQHAIMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFENVDVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++VIN EL +DL+ +EK R KL K KD+ + A LEK++ L
Sbjct: 120 DPISDIEVINTELALADLETVEKAVLRTNKLAKSGDKDAVRMM------ALLEKVRATLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
G+PAR++ + E +K LCL+TMKP +Y+ANV E+ + NPH+++V LA+
Sbjct: 174 QGQPARNLNPDKEEAALLKPLCLMTMKPTMYIANVDEAGFTN---NPHLDKVAELAAREG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S V I A +E E+ +L ++ E+LA +G+ E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 SPVVAICAAIEGEIADLDEADKKEFLADMGLEEPGLNRVIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DFVA A+E G
Sbjct: 291 RAWTIHIGDTAPQAAGVIHTDFERGFIRAQTIAYEDFVACNGEHGAKEAG 340
>gi|260427023|ref|ZP_05781002.1| GTP-binding protein YchF [Citreicella sp. SE45]
gi|260421515|gb|EEX14766.1| GTP-binding protein YchF [Citreicella sp. SE45]
Length = 365
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 247/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDARLDTLASIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED+D+ HV+G+V
Sbjct: 61 SQSIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDDDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD + I EL+ +D++ +EKR++ + +K + D ++ +E KAALE ++Q G
Sbjct: 121 DPVSDAETIETELIIADMESLEKRLQNIVRKVRGGDKEAVQQERLMKAALEMLEQ----G 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++ + K L LLT KP++YV NV E + A N V +A++ +
Sbjct: 177 KPARLVEVDAEDLKQWKMLQLLTSKPVLYVCNVDEDEAAT--GNALSEAVARMAAEQGNA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++L +EE +L+ LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVVISAKIEEEISQLDAEEAEMFLSELGLEEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AY+DFVA A A+E G
Sbjct: 295 WTIRKGTLAPQAAGVIHGDFEKGFIRAETIAYEDFVANKGEAGAKEAG 342
>gi|260588072|ref|ZP_05853985.1| GTP-binding protein YchF [Blautia hansenii DSM 20583]
gi|331082359|ref|ZP_08331485.1| GTP-binding protein YchF [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541599|gb|EEX22168.1| GTP-binding protein YchF [Blautia hansenii DSM 20583]
gi|330400845|gb|EGG80446.1| GTP-binding protein YchF [Lachnospiraceae bacterium 6_1_63FAA]
Length = 365
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 256/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIVAVPD RL +L +S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVAVPDERLKLLGDFYQSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDENVIHVDGCIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K K D ++ E L++++ L DGKPA
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTTKTARMDKEAA----KELEFLKQVKAHLEDGKPA 175
Query: 237 RSVTLNDFERD-SIKQLCLLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASDLQSGR 294
S+ L+ E++ +K+ LLT KP+IY ANV+E DLA D SN +V +V A + S
Sbjct: 176 SSMELDGEEQELYMKEYNLLTWKPVIYAANVSEDDLADDAASNEYVAKVREYAKETGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ A++E E++EL +E+ E+L LG+ +SGL LI ++Y LLGL ++ T+GE ET+AW
Sbjct: 236 FALCAEIEQEISELEEDEKKEFLEDLGIQQSGLEKLIVASYRLLGLLSFLTAGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLV 344
>gi|424780793|ref|ZP_18207663.1| GTP-binding and nucleic acid-binding protein YchF [Catellicoccus
marimammalium M35/04/3]
gi|422842718|gb|EKU27167.1| GTP-binding and nucleic acid-binding protein YchF [Catellicoccus
marimammalium M35/04/3]
Length = 366
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 259/350 (74%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPNVGIV VPD RL L+ L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIEPNVGIVEVPDARLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLS+IR VD+I VVRCF+D +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSNIRNVDAICHVVRCFDDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ ++KR+ +++K K KD+++ E L KI++AL +
Sbjct: 120 DPLSDIETINLELILADLESVDKRITRVQKIAKTKDAEAV----KEYNVLVKIKEALENN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PARSV + + E+ ++ L LLT KP++YVANVAE DLAD +N ++ V A++ +
Sbjct: 176 LPARSVEITEEEQPIVRNLFLLTSKPVLYVANVAEEDLADLENNAYLQSVKEYAANEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A+ E E+ EL +E+ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GEKE +A
Sbjct: 236 VIAVCARAEEEIAELEEDEKQEFLEALGIEESGLDQLIRAAYHLLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AG+IHSDFE+GFIRAETV++DD + GS+ A+E G V
Sbjct: 296 WTFKRGMKAPQTAGIIHSDFERGFIRAETVSFDDLMKYGSMTKAKEAGRV 345
>gi|21673124|ref|NP_661189.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobium tepidum
TLS]
gi|21646199|gb|AAM71531.1| GTP-binding protein [Chlorobium tepidum TLS]
Length = 363
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/349 (56%), Positives = 247/349 (70%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPDPRL L+ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDPRLSELARVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA +E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCFED +I+HV GK+
Sbjct: 60 TPVIVPAVLEIVDIAGLVRGASKGEGLGNQFLSHIREVDAIIHVVRCFEDPNIIHVEGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMD 232
DP D+ I EL+ +DLD +EKR++KL+KG K KD Q+ + EKI L +
Sbjct: 120 DPAGDIATIETELMLADLDSMEKRIDKLRKGARKEKDQQALVD------LAEKIVAGLGE 173
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G P RS+ ND ER KQ L+T KP+++ ANVAE+DL P N H V +A++ S
Sbjct: 174 GVPVRSILENDEERAMAKQFFLITAKPVLFAANVAETDL--PDGNEHTATVAKIAAENGS 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ ISA+ EA++ ELP EER ++L SLG+ SGL LI + Y+LLGL YFT+G KE
Sbjct: 232 KMLIISAKAEADIAELPEEERPDFLESLGLEMSGLDRLIMAAYNLLGLHNYFTAGVKEVH 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTIR G AP+AA IHSDFEKGFIRAE +AY+D + GS +E G
Sbjct: 292 AWTIRKGAAAPEAAAAIHSDFEKGFIRAEVMAYEDLITLGSEQKVKEAG 340
>gi|291522691|emb|CBK80984.1| GTP-binding protein YchF [Coprococcus catus GD/7]
Length = 366
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 258/350 (73%), Gaps = 8/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIVAVPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVAVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++I+HV+G VDP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDNIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K+ K +AK ++ K E + ++ L DGK A
Sbjct: 120 ARDIETINLELIFSDIEILERRIAKIAK-QAKMDKAYAK---ELELTQAVKAHLEDGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
R+ ++D E + I K LLT KP IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 176 RTFEVSDDEDEQIWFKNYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMAKEEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL +L +E+ EYL LGVS SGL L+ ++YSLLGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELADLDDDEKKEYLEDLGVSSSGLDKLVAASYSLLGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AA+EKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLSAAKEKGIV 345
>gi|99080065|ref|YP_612219.1| GTP-dependent nucleic acid-binding protein EngD [Ruegeria sp.
TM1040]
gi|99036345|gb|ABF62957.1| hypothetical protein TM1040_0224 [Ruegeria sp. TM1040]
Length = 365
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 247/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ +++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D D I EL+ +DL+ IEKR L +K K D +++ ++ AA Q L DG
Sbjct: 121 DPVADADTIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAAA----QAMLEDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++ ++ + L LLT KP++YV NV ES+ + N H +V +A+ +
Sbjct: 177 KPARLVEVDAEDQKAWTMLQLLTTKPVLYVCNVGESESVE--GNAHSAKVAEMAAAQGNA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L EE +L +G++E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAQIEEEISQLEPEEAQMFLDEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR+G APQAAGVIH DFEKGFIRAET+AYDD++A G + A+E G
Sbjct: 295 WTIRSGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIACGGESGAKEAG 342
>gi|94269203|ref|ZP_01291399.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
gi|93451308|gb|EAT02188.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
Length = 364
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 256/350 (73%), Gaps = 8/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ G ++AN+PFCTIEPNVG+V VPD RL L+ +++
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAAG-IESANYPFCTIEPNVGMVPVPDHRLDALAAMAR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ V A +EFVDIAGLV GAS+GEGLGN+FL HIR+VD+I VVRCF D++IVHV+ +
Sbjct: 60 TRNKVNAKMEFVDIAGLVSGASRGEGLGNQFLGHIRQVDAIAHVVRCFTDDNIVHVDSGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D +VIN EL+ +DL+ I KR++K + K+ D SK + A LE +++ L G
Sbjct: 120 DPLRDREVINTELILADLETIRKRIQKTANQAKSGDKTSK----QQLAILEAMEKHLDQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR++ L+D R+ ++++ LL+ KP++YVANV ES++ G NP V ++ A+ Q+
Sbjct: 176 QPARTLELDDGGRELLREIFLLSAKPVLYVANVLESEI--NGGNPWVAKLQEAAATEQAS 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V IS +E EL+ L ++ER +LA +G++E GL LIR+ Y LLGL T+FT GEKET+A
Sbjct: 234 VVVISGAIEEELSNLETDERQAFLADMGLTEPGLNRLIRTGYQLLGLVTFFTVGEKETRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI AG APQAAGVIHSDFE+GFIRAE ++ DD +A GS A A+EKGL+
Sbjct: 294 WTIAAGSKAPQAAGVIHSDFERGFIRAEVISCDDLLACGSEAKAKEKGLL 343
>gi|270290034|ref|ZP_06196260.1| GTP-binding protein YchF [Pediococcus acidilactici 7_4]
gi|418069979|ref|ZP_12707256.1| GTPase, translation factor [Pediococcus acidilactici MA18/5M]
gi|270281571|gb|EFA27403.1| GTP-binding protein YchF [Pediococcus acidilactici 7_4]
gi|357536510|gb|EHJ20541.1| GTPase, translation factor [Pediococcus acidilactici MA18/5M]
Length = 368
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 263/374 (70%), Gaps = 14/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++ IN+EL +DL+ +EKR+ K++ KG+ KD+ ++L A LEK+ L
Sbjct: 120 DPIEDIETINMELSLADLESVEKRLAKVQRAAKGRDKDALAEL------AVLEKLHPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--D 289
GKPAR+V ++ E +K L LLT KP++YVAN+AE D+ADP S+ + E+ + + D
Sbjct: 174 AGKPARAVEFDEAEMPIVKGLFLLTTKPVLYVANIAEDDMADPESSKYFKEIKDYVAEVD 233
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ + ISA+ E E+ EL +E+ E+L + G+ E GL LI+++Y+LLGL+T+FT+G K
Sbjct: 234 PDAQVLGISAETEQEIAELEDDEKAEFLEAEGIEEPGLNRLIQASYNLLGLQTFFTAGGK 293
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG--LVSWLH 407
ET+AWT + GMTAPQ AG+IHSDFE+GFIRAETV++DD GS+ A RE G +
Sbjct: 294 ETRAWTFKKGMTAPQTAGIIHSDFERGFIRAETVSFDDLDKYGSMQAVREAGRLRLEGKD 353
Query: 408 YHEHLASYKYFHWN 421
YH F +N
Sbjct: 354 YHVQDGDIIEFRFN 367
>gi|56695719|ref|YP_166070.1| GTP-dependent nucleic acid-binding protein EngD [Ruegeria pomeroyi
DSS-3]
gi|56677456|gb|AAV94122.1| GTP-binding protein YchF [Ruegeria pomeroyi DSS-3]
Length = 365
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 242/350 (69%), Gaps = 11/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG V VPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D + I EL+ +DL+ IEKR L KG KD+Q + + L Q AL
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKDAQQQDR------LLAVAQAALE 174
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGKPAR V ++D + + K L LLT KP++YV NV E++ A+ N H V +A+
Sbjct: 175 DGKPARVVEVSDEDAKAWKMLQLLTTKPVLYVCNVGEAEAAE--GNAHSARVAEMAAAQG 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISAQ+E E+++L +E +L +G+ E+GL LI++ Y+LL L TYFT G KE
Sbjct: 233 NSHVIISAQIEEEISQLEDDEAAMFLEEMGLEEAGLDRLIKAGYALLHLETYFTVGPKEA 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTIR G APQAAGVIH DFEKGFIRAET+AYDD++A A+E G
Sbjct: 293 RAWTIRQGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIACNGEQGAKEAG 342
>gi|330999046|ref|ZP_08322771.1| GTP-binding protein YchF [Parasutterella excrementihominis YIT
11859]
gi|329575788|gb|EGG57314.1| GTP-binding protein YchF [Parasutterella excrementihominis YIT
11859]
Length = 364
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 249/351 (70%), Gaps = 14/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MGLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRLAKLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I +VRCF D++IVHV G V
Sbjct: 60 PQRIVPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAIAHIVRCFNDDNIVHVAGHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK----AALEKIQQAL 230
P D+ VIN+EL +DL ++K++ K K Q++ D E LEKI+ AL
Sbjct: 120 APLEDISVINMELALADLASVDKQLNKYTK------QARSGGDKEALKLVTVLEKIRPAL 173
Query: 231 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
+GKPARSV L+ E+ IKQLCLLTMKP++YVANV E + N + EV + +
Sbjct: 174 NEGKPARSVDLSKDEKAVIKQLCLLTMKPVMYVANVEEDGFEN---NALLEEVKAVGVEE 230
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
++ V + A++EAE+++LP EE+ +L +G+ E GL +IR+ Y LLGL TYFT+G KE
Sbjct: 231 KAPVVAVCAKIEAEISDLPDEEKQIFLEDIGMHEPGLNRVIRAAYQLLGLETYFTAGVKE 290
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAAGVIH+DFE+GFIRA+T++YDDFV A A+E G
Sbjct: 291 VRAWTIHKGDLAPQAAGVIHTDFERGFIRAQTISYDDFVQYKGEAGAKEAG 341
>gi|260888784|ref|ZP_05900047.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
gi|330839824|ref|YP_004414404.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
gi|260861537|gb|EEX76037.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
gi|329747588|gb|AEC00945.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
Length = 368
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 256/370 (69%), Gaps = 9/370 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL + +S
Sbjct: 3 NLDVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLAVLHEMYQS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLV GAS+GEGLGNKFL HIR+VD+I VVRCFED +I HV +D
Sbjct: 62 KKTTPASVRFVDIAGLVAGASKGEGLGNKFLEHIRQVDAIAHVVRCFEDTNITHVAATID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGK 234
P D++ I EL +DL+ +EKR+ KL AK ++S KE AE L +I+ L +GK
Sbjct: 122 PVRDIETILTELCLADLEVLEKRIMKL----AKLAKSGSKEAKAEDEVLRRIKACLEEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
ARS+ L + E I+++ LT+KP++YVANVAE + A G+ N HV V + A+ S
Sbjct: 178 SARSLDLTEDELSLIREMNFLTLKPMLYVANVAEDEAAKDGAGNAHVAAVRDYAAKEGSE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA+VE+E+ EL +E+ +L LG++ESGL LI++ + LLGL T+ T+G E +A
Sbjct: 238 VVVVSARVESEIAELDAEDAKSFLEELGLTESGLDRLIKAAFELLGLLTFLTAGPDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WTI G TAP+AAG IHSD E+GFIRAE V YDD VAAGS AAAREKG V Y
Sbjct: 298 WTIVRGTTAPKAAGKIHSDIERGFIRAEIVNYDDLVAAGSTAAAREKGQVRLEGKDYVMQ 357
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 358 DGDVTYFRFN 367
>gi|86160752|ref|YP_467537.1| GTP-dependent nucleic acid-binding protein EngD [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197124853|ref|YP_002136804.1| GTP-dependent nucleic acid-binding protein EngD [Anaeromyxobacter
sp. K]
gi|85777263|gb|ABC84100.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|196174702|gb|ACG75675.1| GTP-binding protein YchF [Anaeromyxobacter sp. K]
Length = 370
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/348 (56%), Positives = 247/348 (70%), Gaps = 2/348 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA++ +A AAN+PFCTIEPNVG+V VPD RL LS L K
Sbjct: 1 MGLSIGIVGLPNVGKSTLFNALLGAAQAAAANYPFCTIEPNVGVVPVPDARLDALSALFK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K P ++EFVDIAGLV GAS+GEGLGN+FL++IREVD+I V+RCFED D+VHV GKV
Sbjct: 61 PKKTTPTTLEFVDIAGLVAGASKGEGLGNQFLANIREVDAIAHVLRCFEDPDVVHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP+ D DV+ EL+ DLD +EK+ E+ LK KA +L + E AAL++++ L G
Sbjct: 121 DPRGDRDVVETELMLKDLDSVEKKRERALKNTKAAGKAGELAK-LEVAALDRVKAGLEAG 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R+ L+D +R ++K L LLT KP++Y+ANV ES L ++P + V LA +
Sbjct: 180 TPVRAQPLSDEDRAAVKDLFLLTSKPVLYIANVDESQLGKEATDPSILAVKALADAEGAP 239
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V IS +VE+EL EL ER EYLASLG+ E GL L+ + Y LLGL TYFTSGE E +A
Sbjct: 240 MVEISGKVESELVELAPPERAEYLASLGLEEPGLHRLVHAGYRLLGLMTYFTSGEDECRA 299
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R G APQAAGVIH+DFEKGFI+AE + +D + + AA REKG
Sbjct: 300 WTVRQGSRAPQAAGVIHTDFEKGFIKAEVIRIEDLLELKTEAACREKG 347
>gi|402834090|ref|ZP_10882695.1| GTP-binding protein YchF [Selenomonas sp. CM52]
gi|402278920|gb|EJU27970.1| GTP-binding protein YchF [Selenomonas sp. CM52]
Length = 368
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 256/370 (69%), Gaps = 9/370 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL + +S
Sbjct: 3 NLDVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLAVLHEMYQS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLV GAS+GEGLGNKFL HIR+VD+I VVRCFED +I HV +D
Sbjct: 62 KKTTPASVRFVDIAGLVAGASKGEGLGNKFLEHIRQVDAIAHVVRCFEDTNITHVAATID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGK 234
P D++ I EL +DL+ +EKR+ KL AK ++S KE AE L +I+ L +GK
Sbjct: 122 PVRDIETILTELCLADLEVLEKRIMKL----AKLAKSGSKEAKAEDEVLRRIKACLEEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
ARS+ L + E I+++ LT+KP++YVANVAE + A G+ N HV V + A+ S
Sbjct: 178 SARSLDLTEDELSLIREMNFLTLKPMLYVANVAEDEAAKDGAGNAHVAAVRDYAAKEGSE 237
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA+VE+E+ EL +E+ +L LG++ESGL LI++ + LLGL T+ T+G E +A
Sbjct: 238 VVVVSARVESEIAELDAEDAKAFLEELGLTESGLDRLIKAAFELLGLLTFLTAGPDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYHEH 411
WTI G TAP+AAG IHSD E+GFIRAE V YDD VAAGS AAAREKG V Y
Sbjct: 298 WTIVRGTTAPKAAGKIHSDIERGFIRAEIVNYDDLVAAGSTAAAREKGQVRLEGKDYVMQ 357
Query: 412 LASYKYFHWN 421
YF +N
Sbjct: 358 DGDVTYFRFN 367
>gi|284800335|ref|YP_003412200.1| translation-associated GTPase [Listeria monocytogenes 08-5578]
gi|284993520|ref|YP_003415288.1| translation-associated GTPase [Listeria monocytogenes 08-5923]
gi|284055897|gb|ADB66838.1| translation-associated GTPase [Listeria monocytogenes 08-5578]
gi|284058987|gb|ADB69926.1| translation-associated GTPase [Listeria monocytogenes 08-5923]
Length = 366
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 252/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A
Sbjct: 174 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAESEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|435855257|ref|YP_007316576.1| GTP-binding protein YchF [Halobacteroides halobius DSM 5150]
gi|433671668|gb|AGB42483.1| GTP-binding protein YchF [Halobacteroides halobius DSM 5150]
Length = 365
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/370 (51%), Positives = 257/370 (69%), Gaps = 9/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ E G A + N+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGMKCGIVGLPNVGKSTLFNAITEAG-ADSENYPFCTIDPNVGIVDVPDKRLDNLTEIID 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGNKFL +IREVD+I+ VVRCF+++DI HV G V
Sbjct: 60 PQETIPTAIEFVDIAGLVKGASKGEGLGNKFLGNIREVDAIVHVVRCFQNDDITHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+++I +EL+ +DL+ + + EK +K K KE E LEK++ L +G
Sbjct: 120 DPLRDIEIIEMELILADLESVTNKKEKTEK-MLKTGDKMYKEQFE--VLEKVEAVLEEGN 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR + L+D E+ IK L LLT+KP++Y ANV E D+ S P V ++ N A+ +
Sbjct: 177 PARMLDLSDKEKKLIKDLNLLTLKPVLYAANVGEDDIT-KDSIPLVEKIENKAAQEDAEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+SA VEAE+ EL E+ +L LG+ ESGL LI++ Y LLGL T+FT+GEKE +AW
Sbjct: 236 VTVSAGVEAEIAELEGAEKELFLEELGIEESGLDKLIKAGYKLLGLITFFTAGEKEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHL-- 412
T+ G TAP+AAGVIHSD E+GFIRAE ++Y++ VA GS A+AR G + L +++
Sbjct: 296 TVNKGATAPEAAGVIHSDMERGFIRAEVISYEELVAVGSFASARNAGTLR-LEGKDYIIK 354
Query: 413 -ASYKYFHWN 421
YF +N
Sbjct: 355 DGDVCYFKFN 364
>gi|220919571|ref|YP_002494875.1| GTP-dependent nucleic acid-binding protein EngD [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219957425|gb|ACL67809.1| GTP-binding protein YchF [Anaeromyxobacter dehalogenans 2CP-1]
Length = 370
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/348 (56%), Positives = 247/348 (70%), Gaps = 2/348 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA++ +A AAN+PFCTIEPNVG+V VPD RL LS L K
Sbjct: 1 MGLSIGIVGLPNVGKSTLFNALLGAAQAAAANYPFCTIEPNVGVVPVPDARLDALSALFK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K P ++EFVDIAGLV GAS+GEGLGN+FL++IREVD+I V+RCFED D+VHV GKV
Sbjct: 61 PKKTTPTTLEFVDIAGLVAGASKGEGLGNQFLANIREVDAIAHVLRCFEDPDVVHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP+ D DV+ EL+ DLD +EK+ E+ LK KA +L + E AAL++++ L G
Sbjct: 121 DPRGDRDVVETELMLKDLDSVEKKRERALKNTKAAGKAGELAK-LEVAALDRVKAGLEAG 179
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R+ L+D +R ++K L LLT KP++Y+ANV ES L ++P + V LA +
Sbjct: 180 TPVRAQPLSDDDRAAVKDLFLLTSKPVLYIANVDESQLGKEATDPSILAVKALADAEGAP 239
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V IS +VE+EL EL ER EYLASLG+ E GL L+ + Y LLGL TYFTSGE E +A
Sbjct: 240 MVEISGKVESELVELAPPERAEYLASLGLEEPGLHRLVHAGYRLLGLMTYFTSGEDECRA 299
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R G APQAAGVIH+DFEKGFI+AE + +D + + AA REKG
Sbjct: 300 WTVRQGSRAPQAAGVIHTDFEKGFIKAEVIRIEDLLELKTEAACREKG 347
>gi|187734952|ref|YP_001877064.1| GTP-binding protein YchF [Akkermansia muciniphila ATCC BAA-835]
gi|187425004|gb|ACD04283.1| GTP-binding protein YchF [Akkermansia muciniphila ATCC BAA-835]
Length = 373
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/353 (54%), Positives = 256/353 (72%), Gaps = 12/353 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAV KAQAAN+PFCTI+PNVG+V VPDPRL VLS +S S+
Sbjct: 2 LQAGIVGLPNVGKSTLFNAVTRTRKAQAANYPFCTIDPNVGMVTVPDPRLQVLSDMSGSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +P +EFVDIAGLVKGAS+G GLGN+FL++IREVD+I+QVVRCF+++DI+H G VDP
Sbjct: 62 KIIPTLIEFVDIAGLVKGASEGAGLGNQFLANIREVDAIVQVVRCFDNDDIIHELGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRM-EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D+D+IN EL+ +D+ +EKR+ + +K ++ D ++K AE A + K+ L +G P
Sbjct: 122 LRDIDIINSELILADIATMEKRLSSRERKARSGDKEAK----AEVALITKLLPHLNEGNP 177
Query: 236 ARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD----PGSNPHVNEVMNLASD 289
A ++ L+D ER + LL+ K I+ NV E +LAD P ++P+V++V ++
Sbjct: 178 ALTLEPQLDDDERKLLHSFQLLSDKKSIFACNVNEDELADAISNPDAHPYVSQVKKYVAE 237
Query: 290 LQSGR-VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + ISA++E EL ++ EE E+L SLGV +SG+ +LIR+ Y LLGLRTY T+G
Sbjct: 238 HHNAEAIVISARIEEELIDVSEEESREFLESLGVKDSGVSDLIRAVYHLLGLRTYLTTGI 297
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KET+AWTI AG APQAAGVIH+DFE+GFI AE V YDD V+ G A ARE G
Sbjct: 298 KETRAWTIPAGAKAPQAAGVIHTDFERGFIAAEVVHYDDLVSCGGKAGAREHG 350
>gi|42524125|ref|NP_969505.1| GTP-dependent nucleic acid-binding protein EngD [Bdellovibrio
bacteriovorus HD100]
gi|39576333|emb|CAE80498.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 366
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/347 (53%), Positives = 251/347 (72%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPDPR+ ++ K
Sbjct: 1 MALQVGIVGLPNVGKSTLFNALT-SAKAEAANYPFCTIDPNVGVVTVPDPRMDKITEFIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP ++EFVDIAG+VKGASQGEGLGN+FLSHIR+ D+I+ VVRCF+D +I+HV G V
Sbjct: 60 PQKVVPTTMEFVDIAGIVKGASQGEGLGNQFLSHIRQTDAIVHVVRCFDDPNIIHVAGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D+++IN EL+ +DLD +EKR+++ +K + KLK D E A +KI++AL G
Sbjct: 120 EPIRDIEIINTELLLADLDSVEKRLQRTEKQAKNSTDKKLKLDVEVA--KKIKEALGKGL 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+V L++ E+ ++K++ LLT KP++Y NV ++D A G N V A++ +
Sbjct: 178 PARAVVLDEMEQVALKEMHLLTAKPVLYAMNVNDADFA-AGGNDWTKAVEARAAEENNKT 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ I + +EAE+ LP EER ++L +LG E GL LIR Y+LLGL+TYFT+G E +AW
Sbjct: 237 ILICSAMEAEIALLPPEERKDFLDALGAEEPGLNRLIREAYTLLGLQTYFTAGVTEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIRA APQAAGVIHSDFE+GFI+AET +D S A ++ G
Sbjct: 297 TIRANTKAPQAAGVIHSDFERGFIKAETYHCEDLFKYKSEQAIKDAG 343
>gi|406671619|ref|ZP_11078858.1| GTP-binding protein YchF [Facklamia hominis CCUG 36813]
gi|405580869|gb|EKB54928.1| GTP-binding protein YchF [Facklamia hominis CCUG 36813]
Length = 366
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 255/374 (68%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL ++ +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDERLENIAKIYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P +VEF DIAG+VKGAS+GEGLGNKFL++IR+VD+I QVVRCFED +I HV GK+
Sbjct: 60 PQRILPTTVEFTDIAGIVKGASKGEGLGNKFLANIRQVDAICQVVRCFEDPNITHVTGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ +EKR+ K++K K KD ++ L E L K++ AL
Sbjct: 120 DPIDDIETINLELILADLETVEKRLAKVQKIAKTKDKEAVL----EYEVLIKVKDALERN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ A S+ + ++ L LLT K ++Y+AN++E + +P SNP++ EV LA +
Sbjct: 176 QLANSLEFYPEQEPYVRNLFLLTRKKMLYIANISEEEAGNPESNPYLKEVEELAHSQGAQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+ E EE+ L+ G+ ESGL LIRS Y LLGL TYFT+GEKE +A
Sbjct: 236 VVPISARIEEEIAEFDDEEKESLLSDYGIKESGLDRLIRSVYHLLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT GM APQAAGVIHSDFE+GFIRAET++Y+D + GS A +E G HY
Sbjct: 296 WTFHQGMKAPQAAGVIHSDFERGFIRAETMSYEDLMTYGSEQAVKEAG-----HYRSEGK 350
Query: 414 SYKYFHWNSYMLRY 427
Y + + R+
Sbjct: 351 EYLVQDGDIMLFRF 364
>gi|58039605|ref|YP_191569.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
oxydans 621H]
gi|58002019|gb|AAW60913.1| GTP-binding protein [Gluconobacter oxydans 621H]
Length = 364
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 12/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPN G VAVPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNTGRVAVPDPRLDELARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + VP S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SIRKVPTSLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D D+I EL+ +DL+ +EKR ++K +G +++Q++L+ +E + AL
Sbjct: 121 DPVRDADIIETELMLADLESLEKRQVGLQKRARGNDREAQAQLE------LMEPLLAALR 174
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGKPAR+ + E ++ +L LLT KP++YV NV E+ A N V A
Sbjct: 175 DGKPARTAVPKEQEAEA-SRLQLLTTKPVLYVCNVEEASAAT--GNAFSEAVRKRAEAEG 231
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V +SA +EAE+++LP E+R E+L LG+++SGL +I + Y LLGLRTYFT G KE+
Sbjct: 232 AGVVVVSAAIEAEVSQLPQEDRTEFLEGLGLTDSGLDRVIAAGYKLLGLRTYFTVGPKES 291
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI AG APQAA VIH+DFE+GFI ETVA+DD+VA A A+E G
Sbjct: 292 RAWTITAGTKAPQAAAVIHNDFERGFIACETVAFDDYVACNGEAGAKEAG 341
>gi|296315350|ref|ZP_06865291.1| GTP-binding protein YchF [Neisseria polysaccharea ATCC 43768]
gi|296837700|gb|EFH21638.1| GTP-binding protein YchF [Neisseria polysaccharea ATCC 43768]
Length = 363
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERSMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|225028102|ref|ZP_03717294.1| hypothetical protein EUBHAL_02372 [Eubacterium hallii DSM 3353]
gi|224954572|gb|EEG35781.1| GTP-binding protein YchF [Eubacterium hallii DSM 3353]
Length = 365
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 258/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PN+GIVAVPD RL VLS + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNIGIVAVPDQRLKVLSDMYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ IN EL+FSD++ +++R+ K A+ + + K AE L+K++ L DG+ A
Sbjct: 120 LRDIETINFELIFSDIEVLDRRISK----SARAAHNDKKIAAEVEFLKKVKAHLEDGQLA 175
Query: 237 RSVTLNDFERDSIKQLC-LLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
++ D + ++ C LLT KP+I+ ANV+E DLAD G+ N +V +V A ++
Sbjct: 176 KTFVTEDEDEQALLNECNLLTAKPVIFAANVSEDDLADDGAENDYVQKVREYAKSCEAEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++YSLLGL +Y T+G E+KAW
Sbjct: 236 FVVCAQIEQEIAELDDDEKAMFLEDLGLKESGLEKLIKASYSLLGLISYLTAGPIESKAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAG IHSDFE+GFI+A+ ++Y+D +A GS+ AAR+KGLV
Sbjct: 296 TITRGTKAPQAAGKIHSDFERGFIKADVISYEDLIANGSMTAARDKGLV 344
>gi|110681032|ref|YP_684039.1| GTP-dependent nucleic acid-binding protein EngD [Roseobacter
denitrificans OCh 114]
gi|109457148|gb|ABG33353.1| GTP-binding protein YchF [Roseobacter denitrificans OCh 114]
Length = 365
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 249/351 (70%), Gaps = 13/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVDSI V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDSIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME----KLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230
DP +D + I EL+ +DL+ IEKR++ K++ G + Q + +A KAALE
Sbjct: 121 DPVADAETIETELMLADLESIEKRLQNIVRKVRGGDKEAVQQQRLMEAAKAALE------ 174
Query: 231 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
DG+PAR V ++ +R + L LLT KP+++V NV E++ A N H +V +A+
Sbjct: 175 -DGRPARVVEVDAEDRKAWNMLQLLTSKPVLFVCNVGEAEAAT--GNAHSAKVAEMAAAQ 231
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V ISAQ+E E+++L EE +L +G+SE+GL LI++ Y+LL L TYFT G KE
Sbjct: 232 GNSHVVISAQIEEEISQLEPEEAEMFLDEMGLSEAGLDRLIQAGYALLHLETYFTVGPKE 291
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAP+AAGVIH DFEKGFIRAET+AYDDFV+ G +AA+E G
Sbjct: 292 ARAWTIPQGTTAPKAAGVIHGDFEKGFIRAETIAYDDFVSLGGESAAKEAG 342
>gi|168186148|ref|ZP_02620783.1| GTP-binding protein YchF [Clostridium botulinum C str. Eklund]
gi|169295641|gb|EDS77774.1| GTP-binding protein YchF [Clostridium botulinum C str. Eklund]
Length = 365
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 254/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYDTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF D++IVHV G ++P
Sbjct: 60 KKVYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFNDDNIVHVEGSINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGKP 235
D++ INLEL+ +DL+ IE+R EK A+ ++S +KE AE LEK+++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TARSARSGVKEAKAELPVLEKVKEHLESNKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS+ L+ E++ ++ L+T KPI+YV+N+ E DL + N V +V A D S
Sbjct: 176 VRSLELDKEEQEIVRGFFLITSKPILYVSNICEDDLVSENTENEFVKKVKEYAKDEDSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNKLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI G AP+AA IH+D E+GFIRAE ++YDD + GS AAA+EKG+
Sbjct: 296 TIVKGTKAPKAASKIHTDIERGFIRAEVISYDDLIECGSEAAAKEKGV 343
>gi|365093248|ref|ZP_09330315.1| GTP-binding protein YchF [Acidovorax sp. NO-1]
gi|363414631|gb|EHL21779.1| GTP-binding protein YchF [Acidovorax sp. NO-1]
Length = 364
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 248/349 (71%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLQQLAEIIS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV GKV
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +D+ +EK + + K AK K DA K A L +IQ AL +
Sbjct: 120 DPISDIEVIQTELCLADMGTVEKALNRYTKA-AKSGNDK---DAAKLVALLTRIQAALNE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + A+ +
Sbjct: 176 GKPARSVEVTKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKEYAASQNA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ E+ E+R +LA +G +E GL LIR + LLGL+TYFT+G KE +
Sbjct: 233 PVVAICAKMEAEMAEMSDEDRDMFLAEMGQTEPGLARLIRGAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH DFE+GFIRA+T+A+DDF+A A++ G
Sbjct: 293 AWTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFDDFIAYKGEQGAKDAG 341
>gi|154485079|ref|ZP_02027527.1| hypothetical protein EUBVEN_02802 [Eubacterium ventriosum ATCC
27560]
gi|149734032|gb|EDM50151.1| GTP-binding protein YchF [Eubacterium ventriosum ATCC 27560]
Length = 395
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/351 (53%), Positives = 258/351 (73%), Gaps = 7/351 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
+ ++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD R+ L+ L
Sbjct: 29 LIMKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERIDKLTALYN 87
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+K +PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +
Sbjct: 88 SKKTIPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSI 147
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ IN EL+FSD++ +E+R+ K +G D + D + ++++ L +G
Sbjct: 148 DPIRDIETINYELIFSDVEILERRIAKTTRGARNDKALAKELDFQ----QRMKAFLEEGN 203
Query: 235 PA-RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQS 292
A + T ++ E + + LLT KP+I+ ANV+E DLAD G SNPHV V A++ S
Sbjct: 204 LAIKYETEDEDELAWLAEYNLLTYKPVIFAANVSEDDLADDGNSNPHVEAVRKFAAENGS 263
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
ISA++E E++EL +E+ +L LG+SESGL LI+++YSLLGL +Y TSGE ET+
Sbjct: 264 EVFVISAEIEQEISELDDDEKQMFLEDLGISESGLDKLIKASYSLLGLISYLTSGEAETR 323
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IH+DFE+GFI AE VAY D + GSLA A+EKGLV
Sbjct: 324 AWTIKKGTKAPQAAGKIHTDFERGFICAEVVAYKDLIECGSLAKAKEKGLV 374
>gi|159043506|ref|YP_001532300.1| GTP-dependent nucleic acid-binding protein EngD [Dinoroseobacter
shibae DFL 12]
gi|157911266|gb|ABV92699.1| GTP-binding protein YchF [Dinoroseobacter shibae DFL 12]
Length = 365
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 250/349 (71%), Gaps = 9/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPDPRL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDPRLDRLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQVIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D I EL+ +D++ IEKR++ + +K + D ++ +E +AA+ AL +G
Sbjct: 121 DPIADAATIETELMLADMESIEKRLQNIVRKVRGGDKEAVQQERLMRAAM----AALEEG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQS 292
KPAR+V ++ + + + L LLT KPI+YV NV D A GS N H V +A++ +
Sbjct: 177 KPARAVAVDAEDAKAWRMLQLLTTKPILYVCNV---DEASAGSGNAHSKAVATMAAEQGA 233
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISAQ+E E+++L EE +L+ +G+ E+GL LI++ Y+LL L TYFT+G KE +
Sbjct: 234 AHVVISAQIEEEISQLDPEEAEMFLSEMGLEEAGLDRLIKAGYALLHLETYFTAGPKEAR 293
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI AG APQAAGVIH DFE+GFIRAET+AYDD+VA G AA+E G
Sbjct: 294 AWTIPAGTHAPQAAGVIHGDFERGFIRAETIAYDDYVALGGEQAAKEAG 342
>gi|222054666|ref|YP_002537028.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter daltonii
FRC-32]
gi|221563955|gb|ACM19927.1| GTP-binding protein YchF [Geobacter daltonii FRC-32]
Length = 364
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 255/349 (73%), Gaps = 6/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD R+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDERMKKLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAIVHVVRCFEDENVVHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P +D++VI EL +DLD +EK++ +++K AK K+K++A+ ++++ A+ GK
Sbjct: 120 NPVNDIEVIKTELGLADLDSVEKKLVRVEK-LAKSGDKKVKDEAD--FYQRLKGAVEQGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
+ V +D E+ + L LLT KP++YVANV+E DL G +P V V LA+ +
Sbjct: 177 RPQDVVTSDDEKLWLYDLHLLTDKPVLYVANVSEDDL--EGKHPFVARVQELAAAEGARV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VTI ++EAE++EL +E+ +LA +G+ ESGL LIRS Y LLGL TYFT+G KE +AW
Sbjct: 235 VTICGRIEAEISELDGDEKEAFLAEMGLKESGLDRLIRSGYELLGLITYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAGVIHSDFEKGFIRAE +AY DF+AAG A A+EKGL+
Sbjct: 295 TITRGTKAPQAAGVIHSDFEKGFIRAEVIAYSDFIAAGGEAGAKEKGLM 343
>gi|115373528|ref|ZP_01460825.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
gi|310825288|ref|YP_003957646.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
gi|115369534|gb|EAU68472.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
gi|309398360|gb|ADO75819.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
Length = 369
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/369 (50%), Positives = 257/369 (69%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ G AQAAN+PFCTIEPNVG+V VPD RL LS L K
Sbjct: 1 MALSIGIVGLPNVGKSTLFNALSSAG-AQAANYPFCTIEPNVGVVPVPDERLDKLSALIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K +P S+EFVDIAGLV+GAS+GEGLGN+FL++IR+VD++L V+RCFED+++ HV G V
Sbjct: 60 PLKKIPTSLEFVDIAGLVRGASKGEGLGNQFLANIRQVDAVLHVLRCFEDDNVTHVEGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D DV+++EL DL+ +EKR E+ ++ ++ + AE A L++I+ L
Sbjct: 120 NPVRDRDVVDIELCLKDLETVEKRRERAQRNAKTGGKAGDEAKAELALLDRIKAGLDASI 179
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R+ LN+ ER +I++L LLT KP++YVAN+ ES + + HV V +A+ +G
Sbjct: 180 TVRAQKLNEDERAAIRELFLLTDKPVLYVANIGESQIGKEDDSVHVKAVREMAAKEGAGV 239
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ++A +EAE+ +LP EER +L S G++E GL ++R+ Y LLGL+TYFT GE+E +AW
Sbjct: 240 VVLAAAMEAEIQQLPEEERPGFLESAGLTEPGLHKVVRAGYKLLGLQTYFTVGEQECRAW 299
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL--VSWLHYHEHL 412
TI G APQAAGVIHSDFE+GFI+AE + ++D + GS +A +EKGL V Y
Sbjct: 300 TIHTGFKAPQAAGVIHSDFERGFIKAEVMRWEDLIKLGSESAVKEKGLLRVEGKEYVVQD 359
Query: 413 ASYKYFHWN 421
+F +N
Sbjct: 360 GDCMHFRFN 368
>gi|387601732|ref|YP_005733253.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
ST398]
gi|283469670|emb|CAQ48881.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
ST398]
Length = 365
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/378 (49%), Positives = 261/378 (69%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+YF + ++ + F++
Sbjct: 348 GKEYFMQDGDIVHFRFNV 365
>gi|341615439|ref|ZP_08702308.1| GTP-binding protein YchF [Citromicrobium sp. JLT1363]
Length = 366
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 246/349 (70%), Gaps = 8/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG V+VPD RL L+ +SK
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNVGQVSVPDERLEKLAAISK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HVN KV
Sbjct: 61 SAKIIPTQLAFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDIQHVNNKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D +V+ EL+ +DL+ +EKR+E K + D ++K A + L + + L DG
Sbjct: 121 DPIADAEVVETELMLADLESVEKRVENAKRRATGGDKEAK----ALASVLGQALEFLKDG 176
Query: 234 KPARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR V D E + +Q LLT KP++YV NVAE D A+ N V A +
Sbjct: 177 KPARLVEPGDDEEARLFEQAQLLTAKPVLYVCNVAEEDAAE--GNALSKLVAEKAEAEGA 234
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V +SA +EAEL E+ +R EYLA LG++ESGL +IR+ Y LLGL+T+FT G KE +
Sbjct: 235 QSVVVSAAIEAELVEMEEADRAEYLAELGLTESGLSKIIRAGYKLLGLQTFFTVGPKEAR 294
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWT AG APQAAG IH+DFE+GFIRAET+AYDD++A G A A++ G
Sbjct: 295 AWTFPAGAKAPQAAGEIHTDFERGFIRAETIAYDDYIALGGEAGAKDAG 343
>gi|260585088|ref|ZP_05852829.1| GTP-binding protein YchF [Granulicatella elegans ATCC 700633]
gi|260157176|gb|EEW92251.1| GTP-binding protein YchF [Granulicatella elegans ATCC 700633]
Length = 366
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 253/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDERLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ ++KR+ ++ K K KD + AE A LEKI+ L DG
Sbjct: 120 DPIADIETINLELVLADLESVDKRIARVAKIAKTKDKDAV----AELAVLEKIKPVLEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ AR++ D E +K L LLT KP++Y+AN++E D+A+ G N +V V A+ +
Sbjct: 176 QLARTIEFTDEELPIVKGLFLLTTKPMLYIANISEDDVAEGGHNQYVQLVEEYAAKEDAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A+VE E+ EL EE+ +L +G+ SGL LI+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VVVICARVEEEVAELEEEEKQVFLEEMGIETSGLDILIQKAYHLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IHSDFE+GFIRAETVAY D + GS+ AA+E G V
Sbjct: 296 WTFRRGMKAPQCAGIIHSDFERGFIRAETVAYADLLEFGSMGAAKENGKV 345
>gi|254474875|ref|ZP_05088261.1| GTP-binding protein YchF [Ruegeria sp. R11]
gi|214029118|gb|EEB69953.1| GTP-binding protein YchF [Ruegeria sp. R11]
Length = 365
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 244/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPDPRL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDPRLDKLAAIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I EL+ +DL+ IEKR L +K K D +++ ++ L Q L G
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKEAQQQD----RLLATAQDMLESG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++ + + K L LLT KP++YV NV ES+ D N H +V ++A+ +
Sbjct: 177 KPARLVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVD--GNEHSAKVADMATAQGNA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L EE +L+ +G++E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAQIEEEISQLEPEEAEMFLSEMGLAEAGLDRLIRAGYELLKLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AYDD++AA A+E G
Sbjct: 295 WTIRTGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIAANGEQGAKEAG 342
>gi|291563995|emb|CBL42811.1| GTP-binding protein YchF [butyrate-producing bacterium SS3/4]
Length = 365
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/349 (54%), Positives = 254/349 (72%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDFRLKLLSDLYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ I++R+ K+ KG A S L + E L+ +++ L +G A
Sbjct: 120 LRDIETINLELIFSDIEVIDRRIAKMGKGAA--SNKALAK--ELNILKAVKEHLENGNLA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+S D E + + L LLT KP+I+ ANV E DLAD G SNPHV V AS+ S
Sbjct: 176 KSFECEDDEEQAFVASLDLLTWKPVIFAANVGEDDLADDGASNPHVQAVRKFASENDSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E E++EL +E+ +L LG+ ESGL LI ++Y LLGL +Y T+GEKET+AW
Sbjct: 236 FVVCAQIEEEISELDDDEKKMFLDDLGLKESGLDKLIAASYRLLGLISYLTAGEKETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GS A+EKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDCGSYNGAKEKGLV 344
>gi|347550107|ref|YP_004856435.1| putative GTP-binding protein [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346983178|emb|CBW87230.1| Putative GTP-binding protein [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 366
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 252/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K++ A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEFNVLVKLRDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ +D E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAIEFSDDEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAAGEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E++VE+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKVEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|225389948|ref|ZP_03759672.1| hypothetical protein CLOSTASPAR_03698 [Clostridium asparagiforme
DSM 15981]
gi|225043987|gb|EEG54233.1| hypothetical protein CLOSTASPAR_03698 [Clostridium asparagiforme
DSM 15981]
Length = 365
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 258/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDARLDKLTAMYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +++HV+G VDP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K KG A +++ K E + L+ I+ L DGK A
Sbjct: 120 LRDIETINLELIFSDIEILERRISKQSKG-AFNNKDLAK---EVSLLKAIKAHLEDGKLA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS T +D + + I L LLT KP+I+ ANVAESDLAD + N +VN V AS+
Sbjct: 176 RSFTPDDEDDNEFIASLNLLTGKPVIFAANVAESDLADDAANNQYVNAVREFASENGCEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I A++E E+ EL +E+ +L LG++ESGL LI ++Y LLGL +Y T+G +E++AW
Sbjct: 236 FVICAEIEQEIAELDEDEKKMFLEDLGITESGLEKLIAASYRLLGLISYLTAGPQESRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFIRAE VAYDD ++ G + AA+EKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHSDFERGFIRAEVVAYDDLMSCGGMTAAKEKGLV 344
>gi|392329383|ref|ZP_10274000.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
canis FSL Z3-227]
gi|391420185|gb|EIQ82995.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
canis FSL Z3-227]
Length = 371
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 256/355 (72%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 AAFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ + E+ +KQL LLT KP++YVANV E +ADPG +V ++ +
Sbjct: 174 KPVLEDGKSARTIAFTEEEQRIVKQLFLLTTKPVLYVANVDEDKVADPGDIDYVKQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL +++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDDDKTEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD +A GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMAYGSEKAVKEAG 348
>gi|163816699|ref|ZP_02208062.1| hypothetical protein COPEUT_02889 [Coprococcus eutactus ATCC 27759]
gi|158447956|gb|EDP24951.1| GTP-binding protein YchF [Coprococcus eutactus ATCC 27759]
Length = 365
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/349 (53%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIVAVPD RL L+ + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVAVPDERLDRLTEMYNSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K +G D + D + ++I+ L DGK A
Sbjct: 120 IRDIETINLELIFSDIEVLDRRIAKTIRGARNDKMLAKELDFQ----QRIKAHLEDGKLA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+++ + D + + I++ LLT KP+I+ ANV E D+AD G SN +V +V A D +
Sbjct: 176 KTIEVTDEDEQAWIEEYNLLTWKPVIFAANVGEDDIADDGASNENVQKVKAYAKDFDAEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E EL EL EE+ +L LGV ESGL LI+++YSLLGL +Y T+GE E++AW
Sbjct: 236 FVVCAQIEQELAELDDEEKKMFLEDLGVKESGLDKLIKASYSLLGLISYLTAGETESRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G AP AAG IHSDFE+GFI+AE V+Y D + GS+ AA+EKGLV
Sbjct: 296 TIKKGTKAPGAAGKIHSDFERGFIKAEVVSYKDLMDCGSMLAAKEKGLV 344
>gi|429765539|ref|ZP_19297824.1| GTP-binding protein YchF [Clostridium celatum DSM 1785]
gi|429185990|gb|EKY26953.1| GTP-binding protein YchF [Clostridium celatum DSM 1785]
Length = 365
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 252/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYGTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V +VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VRCFED ++VHV G VDP
Sbjct: 60 RKVYTAVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHAVRCFEDENVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+F+DL+ +E+RMEK +K ++ D ++K AE +EK++ L KP
Sbjct: 120 IRDIETINLELIFADLEVLERRMEKGVKLARSGDKKAK----AEYEIMEKVKAHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESD-LADPGSNPHVNEVMNLASDLQSGR 294
R++ L + E +K L ++T KP++Y N++E D +A N +V V A++ SG
Sbjct: 176 IRTLELTEDEEVFVKSLFMITSKPVLYSCNISEDDMMAGNLENDYVKMVKEYAANENSGV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A++E EL+ L EE+ E L G++ESGL LIR++Y LLGL +Y T+G +E +AW
Sbjct: 236 VVVCAKLEEELSGLEDEEKAEMLEEYGLTESGLDKLIRASYKLLGLISYLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI+ G AP AAG IHSD E+GFIRAE VAYDD V GS AAA+EKGL
Sbjct: 296 TIKEGTKAPAAAGKIHSDIERGFIRAEVVAYDDLVECGSEAAAKEKGL 343
>gi|126731981|ref|ZP_01747784.1| translation-associated GTPase [Sagittula stellata E-37]
gi|126707513|gb|EBA06576.1| translation-associated GTPase [Sagittula stellata E-37]
Length = 361
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/343 (53%), Positives = 251/343 (73%), Gaps = 7/343 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+G++ S++ +
Sbjct: 2 GIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGDVAVPDTRLDKLAGIAGSKQII 61
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED+D+ HV+G+VDP SD
Sbjct: 62 PTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDDDVTHVDGRVDPVSD 121
Query: 180 VDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
D I EL+ +D++ +EKR++ + +K + D ++ +E K ALE ++Q GKPAR
Sbjct: 122 ADTIETELIIADMESLEKRLQNIVRKVRGGDKEAVQQERLMKMALEVLEQ----GKPARV 177
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
V ++ + + + L LLT KP++YV NV E D ++ N +V +A++ + V IS
Sbjct: 178 VEVDAEDAKAWRMLQLLTAKPVLYVCNVDEGDASE--GNALSAKVFEMAAEQGNSAVVIS 235
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A++E E+++L ++E E+L LG+ E+GL LI++ Y+LLGL+TYFT G KE +AWTIR
Sbjct: 236 AKIEEEISQLDADEAQEFLGELGLEEAGLDRLIKAGYALLGLQTYFTVGPKEARAWTIRE 295
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
G APQAAGVIH DFEKGFIRAET+AYDD+V G A++ G
Sbjct: 296 GTGAPQAAGVIHGDFEKGFIRAETIAYDDYVTLGGEGPAKDAG 338
>gi|225847929|ref|YP_002728092.1| GTP-dependent nucleic acid-binding protein EngD
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643635|gb|ACN98685.1| GTP-binding protein YchF [Sulfurihydrogenibium azorense Az-Fu1]
Length = 370
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 254/373 (68%), Gaps = 10/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKST+FNA+ E KA AN+PFCTI+PNVGIV VPD RL+ L+ + K
Sbjct: 1 MKMNVGIVGLPNVGKSTIFNALTETAKASVANYPFCTIDPNVGIVNVPDERLYKLAEIEK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ VPA++EFVDIAGLV+GAS+GEGLGN+FL++IR+V +I VVRCF+D DI+HV G V
Sbjct: 61 SKNIVPATIEFVDIAGLVRGASKGEGLGNQFLANIRQVSAIAHVVRCFDDPDIIHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D ++I EL+ +DL IEKR+EK K AK + K + E LEK + L D K
Sbjct: 121 NPVRDAEIIETELILADLQSIEKRLEKSTKA-AKTGSKEAKFEVE--VLEKAKAILEDLK 177
Query: 235 PARSVTLNDFERDSI----KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
P R+ T + FE++ + K L +T+KP++YVAN+ E DL D +NP++ ++ A
Sbjct: 178 PLRTNT-DKFEKEELEWLNKTLFPITIKPLMYVANIPEEDLPDGKNNPYLQQLKEKAEKE 236
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
S V + +VE EL ELP EER E+L +LG+ E GL +I++ YSLLGL TYFT+GEKE
Sbjct: 237 GSPVVVLCGKVEQELIELPKEERKEFLNALGLEEPGLNKMIKTGYSLLGLITYFTAGEKE 296
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHY 408
+AWTI+ G APQAAG IHSD E+GFI AE + Y+D + GS+ A+E GLV Y
Sbjct: 297 ARAWTIKKGTKAPQAAGEIHSDIERGFIAAEIINYEDLIKIGSIQKAKELGLVRIEGKDY 356
Query: 409 HEHLASYKYFHWN 421
YF +N
Sbjct: 357 EVKDGDVIYFRFN 369
>gi|114331141|ref|YP_747363.1| GTP-dependent nucleic acid-binding protein EngD [Nitrosomonas
eutropha C91]
gi|114308155|gb|ABI59398.1| GTP-binding protein YchF [Nitrosomonas eutropha C91]
Length = 363
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/349 (56%), Positives = 251/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPD RL LS +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDSRLAELSKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHV GKV
Sbjct: 60 PQRVQPAIVEFVDIAGLVAGASRGEGLGNQFLANIRETDAIVNVVRCFDDPNVVHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQ-SKLKEDAEKAALEKIQQALMD 232
DP +D+++I EL +DL +EK + + KK K+ D + SKL A LEK+ L
Sbjct: 120 DPLADIEIILTELALADLATVEKAIVRDSKKMKSGDKEASKL-----VAVLEKLVLHLNQ 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G+PAR+ L+D ER+ IK LCLLT+KP +YV NV E + NPH++ + A+ +
Sbjct: 175 GQPARTFPLSDEEREIIKSLCLLTIKPAMYVGNVLEDGFEN---NPHLDRLREYAAKENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A++EAEL +L ++ E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVALCAKIEAELADLDEADKKEFLADLGLEEPGLNRLIRTGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAG IH+DFEKGFIRA+TV+Y DF+A G A A+EKG
Sbjct: 292 AWTIHRGDTAPQAAGAIHTDFEKGFIRAQTVSYADFIACGGEAGAKEKG 340
>gi|28199875|ref|NP_780189.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
Temecula1]
gi|182682627|ref|YP_001830787.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
M23]
gi|28057996|gb|AAO29838.1| GTP-binding protein [Xylella fastidiosa Temecula1]
gi|182632737|gb|ACB93513.1| GTP-binding protein YchF [Xylella fastidiosa M23]
Length = 363
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/350 (53%), Positives = 254/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V+VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVSVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE +I+HV GKV
Sbjct: 60 PQKLLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGEIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D+++I+ EL+ +DLD +EK R+ + KG ++ ++ K+ LE++Q AL
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRIMRAAKGGGGEAIAR------KSVLERLQVALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + AS
Sbjct: 174 EGKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLEALRVRASSDN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE
Sbjct: 231 AQLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G
Sbjct: 291 RAWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAG 340
>gi|116874141|ref|YP_850922.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116743019|emb|CAK22143.1| GTP-binding protein YchF [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 366
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/352 (54%), Positives = 252/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K++ A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLRDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAAAEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|358053799|ref|ZP_09147456.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
simiae CCM 7213]
gi|357256785|gb|EHJ07110.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
simiae CCM 7213]
Length = 365
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/378 (49%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDTRLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L KI++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIQKMARQKDKTAEM----EVRILTKIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + A+ +S
Sbjct: 176 KPVRSLEFNDEDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAAKEESE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIAMLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|116617474|ref|YP_817845.1| GTPase, translation factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096321|gb|ABJ61472.1| Predicted GTPase, probable translation factor [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 366
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 247/348 (70%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDTRLARIQEVVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ IN EL+ +DL+ ++KR K+ + K D +K AE LEKI+ L G
Sbjct: 120 DPLDDIETINTELILADLEAVDKRYSKVARAAKGNDKNAK----AEFVVLEKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++T + E+ +K L LLT KPI+YVAN+AE D+ADP + + N++ A+ +
Sbjct: 176 KSARTITFTEEEQKIVKGLFLLTTKPILYVANLAEDDMADPMGSKYFNQIKEFAATEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ +LP EE+ E+L GV E+GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEEIAQLPEEEKAEFLEMAGVEEAGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT AG APQAAGVIHSDFE+GFIRAET+A+ D GS+ A +E G
Sbjct: 296 WTFTAGSKAPQAAGVIHSDFERGFIRAETIAFSDLDELGSVKAVKEAG 343
>gi|226939278|ref|YP_002794349.1| GTP-dependent nucleic acid-binding protein EngD [Laribacter
hongkongensis HLHK9]
gi|226714202|gb|ACO73340.1| YchF [Laribacter hongkongensis HLHK9]
Length = 363
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 249/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL LS +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDPRLDELSKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCFED +IVHV GKV
Sbjct: 60 PQRVQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFEDPNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ I EL +DL +EK + + KK KA D ++ A A LEK+ L G
Sbjct: 120 DPIADIETIGTELALADLSAVEKALNREGKKAKAGDKDAR----ALVAVLEKLVPHLDQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ L+ E +K LCLLT+KP +YVANVAE AD N H++ + LA +
Sbjct: 176 KPARSLELSPEELAIVKPLCLLTIKPAMYVANVAEDGFAD---NAHLDRLKALADAEGAP 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ +L ++ ++LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCASIESEIADLDDADKTDFLAEMGLEEPGLNRLIRAGYKLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAGVIH+DFE+GFIRA+T+++ DF+ G A A+E G
Sbjct: 293 WTIHVGDTAPQAAGVIHTDFERGFIRAQTISFADFIQYGGEAKAKEAG 340
>gi|317133094|ref|YP_004092408.1| GTP-binding protein YchF [Ethanoligenens harbinense YUAN-3]
gi|315471073|gb|ADU27677.1| GTP-binding protein YchF [Ethanoligenens harbinense YUAN-3]
Length = 364
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 249/348 (71%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N A++AN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAIT-NAGAESANYPFCTIEPNVGVVAVPDERLKVLTDMYHAV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEFVDIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFE D++HV G VDP
Sbjct: 60 KTTPAVVEFVDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEGTDVIHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R++K K + K ++E LE+++ AL G PA
Sbjct: 120 VRDMETINLELIFSDLEMVERRLDK----DKKLLKGDKKYESEIVLLERVKAALESGLPA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRV 295
RSV + + + LL+ KP+IY AN++E D A NPH + A +G +
Sbjct: 176 RSVERTPEDDAVLATVALLSEKPVIYAANLSEEDFKAGYEKNPHFTRLRAQAEKEGAGVL 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E EL+ + EE+ +LA LG+ +SGL LIR +Y+LLGL +Y T+GE E +AWT
Sbjct: 236 PICAKIEEELSSMDEEEKDLFLADLGLEQSGLDRLIRESYALLGLISYLTAGEPEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G APQAAG IH+DFE+GFIRAE VAYDD V GSLAAAREKGL+
Sbjct: 296 ITRGTKAPQAAGKIHTDFERGFIRAEVVAYDDLVRCGSLAAAREKGLL 343
>gi|85373990|ref|YP_458052.1| GTP-dependent nucleic acid-binding protein EngD [Erythrobacter
litoralis HTCC2594]
gi|84787073|gb|ABC63255.1| GTPase [Erythrobacter litoralis HTCC2594]
Length = 366
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 245/349 (70%), Gaps = 8/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL ++ ++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNVGQVAVPDERLDKIAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K + + FVDIAGLVKGASQGEGLGN+FL +IREVD+I+ V+RCFED+DI HV+ +V
Sbjct: 61 SAKVIATQLAFVDIAGLVKGASQGEGLGNQFLGNIREVDAIVHVLRCFEDDDIQHVSNRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D +V+ EL+ +DL+ +EKR+ K+ A D ++KL ALE L +G
Sbjct: 121 DPLADAEVVETELMLADLESLEKRVPNAEKRATAGDKEAKLTASVLGQALE----LLREG 176
Query: 234 KPARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR D E I +Q LLT KP++YV NVAE D A+ N +V A +
Sbjct: 177 KPARLTEPKDDEEARIFQQAQLLTAKPVLYVCNVAEEDAAE--GNDLSAQVFAKADAEGA 234
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V +SA +EAEL + E+R EYLA LG+ ESGL +IR+ Y+LLGL+T+FT+G KE++
Sbjct: 235 QAVVVSAAIEAELVGMEPEDRAEYLAELGLKESGLARVIRAGYTLLGLQTFFTAGPKESR 294
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWT G APQAAG IH+DFEKGFIRAET+AYDD+V+ G AAARE G
Sbjct: 295 AWTFPTGAKAPQAAGEIHTDFEKGFIRAETIAYDDYVSLGGEAAAREAG 343
>gi|357236157|ref|ZP_09123500.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
criceti HS-6]
gi|356884139|gb|EHI74339.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
criceti HS-6]
Length = 371
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/355 (53%), Positives = 255/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDSRLQKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 GAFVDPLADIDTINLELILADLESINKRYARVEKIARTQKDKDSI------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR+V + E+ +K L LLT KP++YVANV E +ADP S +V ++ +
Sbjct: 174 KPVLEDGKSARTVEFTEEEQKIVKGLFLLTAKPVLYVANVNEDQVADPDSINYVKQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G+SESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKGEFLEAMGLSESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLITYGSEKAVKEAG 348
>gi|86751266|ref|YP_487762.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris HaA2]
gi|86574294|gb|ABD08851.1| GTP-binding protein [Rhodopseudomonas palustris HaA2]
Length = 365
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/351 (55%), Positives = 241/351 (68%), Gaps = 13/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALM-- 231
P +D+D I EL+ +DLD +EKR++ L KK K D SK + LE + +AL
Sbjct: 121 APIADIDTIETELMLADLDSLEKRVDNLTKKAKGGDKDSKEQ-------LELVTRALTLL 173
Query: 232 -DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
+G+PAR + E + + L LLT KP++YV NV E A+ N VM A D
Sbjct: 174 REGRPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNAFSQAVMARAKDE 231
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 232 GAVAVVISAKIESEIATLSKEERVDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKE 291
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD+ G A AR+ G
Sbjct: 292 ARAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYTTLGGEAGARDGG 342
>gi|365155937|ref|ZP_09352279.1| GTP-dependent nucleic acid-binding protein engD [Bacillus smithii
7_3_47FAA]
gi|363627862|gb|EHL78706.1| GTP-dependent nucleic acid-binding protein engD [Bacillus smithii
7_3_47FAA]
Length = 366
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 250/350 (71%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL+ L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGMVEVPDQRLNRLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D +I HV GKV
Sbjct: 60 PKKIVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL+ +DL+ +EKR+ K++K K KD + AE L K+++A
Sbjct: 120 DPIVDIETINLELILADLETVEKRIGKVEKIAKQKDKAAM----AEFEVLSKLKEAFEAE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V + + +K LLTMKP++YVANV E D AD +N +V +V A +
Sbjct: 176 KPARTVEFTEEQEKLVKGFQLLTMKPVLYVANVGEDDAADASNNQYVQQVREFAEKDNAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+GE E +A
Sbjct: 236 VIVVCAKIEEEIAELEDEEKAMFLQELGIEESGLDQLIRAAYHLLGLATYFTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM AP+ AG+IHSDFE+GFIRAE V+Y+D + AGS+ ARE G V
Sbjct: 296 WTFKKGMKAPECAGIIHSDFERGFIRAEVVSYEDLIEAGSMVGAREAGKV 345
>gi|302393059|ref|YP_003828879.1| GTP-binding protein YchF [Acetohalobium arabaticum DSM 5501]
gi|302205136|gb|ADL13814.1| GTP-binding protein YchF [Acetohalobium arabaticum DSM 5501]
Length = 365
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 260/369 (70%), Gaps = 7/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ E G A A N+PFCTI+PN+GIV VPD RL VL+ +
Sbjct: 1 MGMKCGIVGLPNVGKSTLFNAITEVG-AGAENYPFCTIDPNMGIVKVPDKRLEVLTEIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ P ++EFVDIAGLVKGAS GEGLGNKFLSHIREVD+I+ VVRCFED+DI HV G +
Sbjct: 60 PQETTPTAIEFVDIAGLVKGASDGEGLGNKFLSHIREVDAIIHVVRCFEDSDITHVEGDI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ IN EL+ +DL+ +E ++EK ++ K + K KE+ E LEKI+ AL +G+
Sbjct: 120 DPLRDIGTINTELILADLETVENKIEKTER-MLKSGEKKYKEEME--VLEKIKTALDNGQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+V L+ E++ I+ LLT+KP +YVANV+E ++ S HV + N A+ ++
Sbjct: 177 PARNVELSSKEKERIRDCHLLTLKPTLYVANVSEDEIGKEESR-HVQAIRNHAASEEAEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+T+SA+VEAE+ EL + E +L LG+ ESGL LI++ Y LLGL T+FT+G KE +AW
Sbjct: 236 ITVSAEVEAEVAELSTTEEELFLEELGIEESGLDKLIKAGYKLLGLITFFTAGPKEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL--VSWLHYHEHL 412
T++ G TAP+AAG IH+D +KGFIRAE V YD V AGS A AR++G+ V Y
Sbjct: 296 TVKKGSTAPEAAGKIHTDMQKGFIRAEVVTYDKLVEAGSFADARDEGVLRVEGKDYIIQD 355
Query: 413 ASYKYFHWN 421
YF +N
Sbjct: 356 GDVCYFRFN 364
>gi|289207533|ref|YP_003459599.1| GTP-binding protein YchF [Thioalkalivibrio sp. K90mix]
gi|288943164|gb|ADC70863.1| GTP-binding protein YchF [Thioalkalivibrio sp. K90mix]
Length = 364
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/371 (52%), Positives = 255/371 (68%), Gaps = 12/371 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + A N+PFCTI+PNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALT-RAEIAAENYPFCTIDPNVGVVEVPDPRLARLTEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + +VEFVDIAGLV GA+QGEGLGN+FL+HIRE D+I QVVRCFED+DIVHV GKV
Sbjct: 60 PERTLATTVEFVDIAGLVAGAAQGEGLGNQFLAHIRETDAIAQVVRCFEDDDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +D++ I+ EL+ +DL+ K + +L +A SQ K KAA EK+ L G
Sbjct: 120 DPLADIETISTELMLADLETANKALTRL--ARAAKSQDKTAIAQLKAA-EKVAAGLDQGV 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+ L++ ER + L LLT+KP++Y+ANV E+ LA G N V V A++ +
Sbjct: 177 PARAQDLDEDERRLLYDLHLLTIKPLMYIANVDEASLA--GGNAMVEAVQAKAAEEGAEV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V++ A +EAE+ L EERVE+LA LG+ E GL +IR+ Y LL L+T+FT+GEKE +AW
Sbjct: 235 VSVCAAIEAEIAVLDPEERVEFLADLGLEEPGLDRVIRTAYRLLDLQTFFTAGEKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWL----HYHE 410
T+R G TAPQAAGVIH+DFE+GFIRAE V YDDFVA A++ G W Y
Sbjct: 295 TVRRGSTAPQAAGVIHTDFERGFIRAEVVGYDDFVANNGEQGAKDAG--KWRLEGKEYLM 352
Query: 411 HLASYKYFHWN 421
H +F +N
Sbjct: 353 HEGDVVHFRFN 363
>gi|381335950|ref|YP_005173725.1| GTPase, translation factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356643916|gb|AET29759.1| GTPase, translation factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 366
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 247/348 (70%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDTRLARIQEVVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ IN EL+ +DL+ ++KR K+ + K D +K AE LEKI+ L G
Sbjct: 120 DPLDDIETINTELILADLEAVDKRYSKVARAAKGNDKNAK----AEFVVLEKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++T + E+ +K L LLT KPI+YVAN+AE D+ADP + + N++ A+ +
Sbjct: 176 KSARTITFTEEEQKIVKGLFLLTTKPILYVANLAEDDMADPMGSKYFNQIKEFAATEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ +LP EE+ E+L GV E+GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEEIAQLPEEEKAEFLEMAGVEEAGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT AG APQAAGVIHSDFE+GFIRAET+A+ D GS+ A +E G
Sbjct: 296 WTFTAGSKAPQAAGVIHSDFERGFIRAETIAFSDLDELGSVRAVKEAG 343
>gi|293375545|ref|ZP_06621819.1| GTP-binding protein YchF [Turicibacter sanguinis PC909]
gi|325845113|ref|ZP_08168424.1| GTP-binding protein YchF [Turicibacter sp. HGF1]
gi|292645762|gb|EFF63798.1| GTP-binding protein YchF [Turicibacter sanguinis PC909]
gi|325488855|gb|EGC91253.1| GTP-binding protein YchF [Turicibacter sp. HGF1]
Length = 366
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/374 (52%), Positives = 261/374 (69%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-IEAANYPFATIDPNVGVVEVPDERLNKLTELVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAGLV+GAS GEGLGNKFL++IREVD+I QVVRCFED +I+HV G V
Sbjct: 60 PKKTVPTTFEFTDIAGLVRGASNGEGLGNKFLANIREVDAITQVVRCFEDGNIIHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP DV+VINLEL+ +D++Q+++R+ +L K+ K+ D +K AE A LEK+++
Sbjct: 120 DPVRDVEVINLELILADMEQVDRRLTRLAKQAKSGDKDAK----AEVAVLEKVKEGFDQE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR++ L+D ++ +IK L LLT+KPI+YVANV E DL N +V ++ A +
Sbjct: 176 LPARAMDLSDDDKAAIKHLQLLTLKPILYVANVGEDDLMAGEDNEYVKALVEYADREGAK 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A++E E+++L EE+ +L LG+ ESGL LIR Y LLGL TYFT+G +E +A
Sbjct: 236 VIKVCARIEEEISQLEEEEKAAFLEELGIKESGLDQLIREAYDLLGLATYFTAGVQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT GMTAPQ AG+IHSDFE+GFIRAETV++DD V GS AARE G Y
Sbjct: 296 WTFIKGMTAPQCAGIIHSDFERGFIRAETVSFDDLVKYGSELAAREAG-----RYRLEGK 350
Query: 414 SYKYFHWNSYMLRY 427
SY + + R+
Sbjct: 351 SYIVQDGDVMLFRF 364
>gi|258424584|ref|ZP_05687461.1| GTP-binding protein YchF [Staphylococcus aureus A9635]
gi|417890672|ref|ZP_12534744.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21200]
gi|418283769|ref|ZP_12896508.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21202]
gi|418309151|ref|ZP_12920725.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21194]
gi|418560277|ref|ZP_13124796.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21252]
gi|418888280|ref|ZP_13442419.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|418993090|ref|ZP_13540731.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG290]
gi|257845179|gb|EEV69216.1| GTP-binding protein YchF [Staphylococcus aureus A9635]
gi|341854445|gb|EGS95315.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21200]
gi|365166298|gb|EHM57965.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21202]
gi|365234999|gb|EHM75921.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21194]
gi|371972404|gb|EHO89785.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21252]
gi|377748075|gb|EHT72038.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377756893|gb|EHT80790.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 365
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/378 (49%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNDEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|339500973|ref|YP_004699008.1| GTP-binding protein YchF [Spirochaeta caldaria DSM 7334]
gi|338835322|gb|AEJ20500.1| GTP-binding protein YchF [Spirochaeta caldaria DSM 7334]
Length = 369
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/353 (56%), Positives = 256/353 (72%), Gaps = 13/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKST+F+A+ A+AAN+PFCTI PNVGIV VPD RL L+ + K
Sbjct: 1 MALNCGIVGLPNVGKSTIFSALT-RAPAEAANYPFCTINPNVGIVDVPDNRLKKLAEIFK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PASVEFVDIAGLVKGASQGEGLGN+FLSHIREV I QVVRCFE+ DI+HV+ KV
Sbjct: 60 PKRVIPASVEFVDIAGLVKGASQGEGLGNQFLSHIREVGVIAQVVRCFENPDIIHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK----LK-KGKAKDSQSKLKEDAEKAALEKIQQA 229
DP+SD++ IN+EL +DLD + KR EK LK +GK + Q++L +AL+K+Q A
Sbjct: 120 DPESDMETINVELALADLDTVAKRREKAVRALKVQGKDQQKQAELL----ISALDKVQPA 175
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
L GKPARSV L+D ER ++ L+TMKP +YV NV E + + N +V+ V A+
Sbjct: 176 LEQGKPARSVPLSDDERAALYDSHLITMKPQLYVCNVDEEGMRN--GNRYVDMVKARAAA 233
Query: 290 LQSGRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
S V I + EAEL +L S EER+ +L+ LG++ESGL +LI + Y LLGLRT+FT+GE
Sbjct: 234 ENSEAVVICGKFEAELADLESEEERLAFLSELGLAESGLASLIHAAYRLLGLRTFFTAGE 293
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWTI AG APQAAGVIH+DFEKGFI+AE +Y+D + GS A +E G
Sbjct: 294 DECRAWTIHAGDKAPQAAGVIHTDFEKGFIKAEVYSYEDLLTYGSEAKIKEAG 346
>gi|15839230|ref|NP_299918.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
9a5c]
gi|9107872|gb|AAF85438.1|AE004071_6 GTP-binding protein [Xylella fastidiosa 9a5c]
Length = 363
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE I+HV GKV
Sbjct: 60 PQKLLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGQIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D+++I+ EL+ +DLD +EK RM + KG K++ A K+ LE++Q AL
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRMMRAAKGGDKEAI------ACKSVLERLQVALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + A+
Sbjct: 174 EGKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLEALRVRAASDN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE
Sbjct: 231 AQLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G
Sbjct: 291 RAWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAG 340
>gi|254804334|ref|YP_003082555.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis alpha14]
gi|421538810|ref|ZP_15984982.1| GTP-binding protein EngD [Neisseria meningitidis 93003]
gi|254667876|emb|CBA03961.1| predicted GTPase translation factor [Neisseria meningitidis
alpha14]
gi|402315517|gb|EJU51080.1| GTP-binding protein EngD [Neisseria meningitidis 93003]
Length = 363
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|345874961|ref|ZP_08826758.1| hypothetical protein l11_08420 [Neisseria weaveri LMG 5135]
gi|417957437|ref|ZP_12600359.1| hypothetical protein l13_07680 [Neisseria weaveri ATCC 51223]
gi|343968269|gb|EGV36500.1| hypothetical protein l13_07680 [Neisseria weaveri ATCC 51223]
gi|343969681|gb|EGV37890.1| hypothetical protein l11_08420 [Neisseria weaveri LMG 5135]
Length = 363
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 250/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK + ++GK S K DA+K A EK+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--TREGKRAKSGDK---DAQKLVALCEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP RS L+ E ++ L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEELAMLRPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL EE+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAALESEIAELEDEEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVTLGGEAKAKEAG 340
>gi|19704700|ref|NP_604262.1| GTP-dependent nucleic acid-binding protein EngD [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19715014|gb|AAL95561.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 364
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 262/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGVVTVPDERLNELAKIINPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEF+DIAGLVKGAS+GEG GNKFLS+IR +I QVVRCF+D++I HV+G VDP D
Sbjct: 65 PATVEFIDIAGLVKGASKGEGRGNKFLSNIRSTSAICQVVRCFDDDNITHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + S V +S
Sbjct: 181 LDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVREFTKSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VE+EL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVESELQEMDEESKQEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDNFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|422111114|ref|ZP_16380875.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378315|emb|CBX23061.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 363
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 251/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DF+A G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFIALGGEAKAKEAG 340
>gi|163858314|ref|YP_001632612.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella petrii
DSM 12804]
gi|163262042|emb|CAP44344.1| putative GTP binding protein [Bordetella petrii]
Length = 363
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 248/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLQKLAEIVG 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE D+I+ VVRCFED +++HV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++VI EL +DL EK + + +K ++S KE A++ AALEK AL
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHR----HSKTARSGDKE-AQRLVAALEKCIAALNQ 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KP RSV L+D E IKQLC +T KP +YV NV++ + NP + + A+ +
Sbjct: 175 AKPVRSVDLSDEEAALIKQLCFITAKPAMYVGNVSDDGFTN---NPLLERLTEFAAARNA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A +E+E+ +LP E+R +LA +G+ E GL LIR+ + LLGL+TYFT+G KE +
Sbjct: 232 PVVAICAAIESEIVDLPDEDRQAFLADMGMDEPGLNRLIRAAFKLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+T+++DDF+A A+E G
Sbjct: 292 AWTIPIGATAPQAAGVIHTDFERGFIRAQTISFDDFIACKGEQGAKEAG 340
>gi|357639709|ref|ZP_09137582.1| GTP-binding protein YchF [Streptococcus urinalis 2285-97]
gi|418416915|ref|ZP_12990113.1| GTP-binding protein YchF [Streptococcus urinalis FB127-CNA-2]
gi|357588163|gb|EHJ57571.1| GTP-binding protein YchF [Streptococcus urinalis 2285-97]
gi|410872971|gb|EKS20907.1| GTP-binding protein YchF [Streptococcus urinalis FB127-CNA-2]
Length = 371
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 257/355 (72%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLTKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FL++IR+VD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLANIRQVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DLD + KR +++K K KDS AE L+KI
Sbjct: 120 DAFVDPIADIDTINLELILADLDSVNKRYARVEKIARTQKDKDSL------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ N+ E+ +K L LLT KP++YVANV E ++DP S +VN++
Sbjct: 174 KPVLEDGKSARTIDFNEEEQKIVKGLFLLTTKPVLYVANVDEDKVSDPDSIDYVNQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
AS + V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 ASTENAEVVVISARAEEEISELDDEDKMEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD ++ GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLISYGSEKAVKEAG 348
>gi|347531305|ref|YP_004838068.1| GTP-binding protein YchF [Roseburia hominis A2-183]
gi|345501453|gb|AEN96136.1| GTP-binding protein YchF [Roseburia hominis A2-183]
Length = 366
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 256/351 (72%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PN+GIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNIGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K E +E ++ L DGK A
Sbjct: 120 ARDIETINLELIFSDIEILDRRIAKIAK-QARMDKTLAK---ELELVEAVKAHLEDGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
RS + D E I K LLT KP IY ANVAE DLAD G SNPHV +V +A++ +
Sbjct: 176 RSFEVPDDEDAQIWFKGYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMATEEGAK 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL EL EE+ EYL LGV SGL L+ ++YS+LGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELAELSEEEKKEYLDDLGVESSGLDKLVAASYSILGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLAAAREKGIVG 346
>gi|78484740|ref|YP_390665.1| GTP-dependent nucleic acid-binding protein EngD [Thiomicrospira
crunogena XCL-2]
gi|78363026|gb|ABB40991.1| GTP-binding protein, HSR1-related [Thiomicrospira crunogena XCL-2]
Length = 363
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 260/351 (74%), Gaps = 13/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ N ++AN+PFCTIEPNVG+V VPDPR L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALT-NAGIESANYPFCTIEPNVGVVPVPDPREQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + A+V+F+DIAGLV+GAS+GEGLGNKFL++IRE D+I+QVVRCFE++DIVHV GKV
Sbjct: 60 PERILSATVDFMDIAGLVEGASKGEGLGNKFLANIRETDAIVQVVRCFENDDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD+++IN+EL+ +D++ +EK ++K ++ K+ D ++ A++A EK+ + + G
Sbjct: 120 DPLSDIEIINMELILADMESLEKAVQKVIRVAKSGDKEAL----AKQALYEKVLKEVEGG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K R V L D ER ++ L LLT+KP++Y+ANV E +NP+++ V +A + +
Sbjct: 176 KLVRLVELTDDERKMLQDLHLLTIKPMMYIANVNEDGFE---NNPYLDAVQKVAEEQGAI 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E ++ EL E++ E+LA +G E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPISAEIEEQVAELDEEDKAEFLAEMGQEEPGLNRLIRAAYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVA----AGSLAAAREK 400
WT++ G TAPQAAGVIH+DFEKGFIRAE AYDDF+ AG+ AA +++
Sbjct: 293 WTVKKGATAPQAAGVIHTDFEKGFIRAEVTAYDDFIEYKGDAGAKAAGKQR 343
>gi|91978460|ref|YP_571119.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris BisB5]
gi|91684916|gb|ABE41218.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 365
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 243/350 (69%), Gaps = 11/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM--- 231
P +D++ I EL+ +DLD +EKR++ L K KAK + KE LE + +AL
Sbjct: 121 APIADIETIETELMLADLDSLEKRVDNLTK-KAKGNDKDAKEQ-----LELVNRALTLLR 174
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR + E + + L LLT KP++YV NV E A+ N +VM A +
Sbjct: 175 EGKPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNSFSEQVMARAKEEG 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 233 AVAVVISAKIESEIATLSREERVDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKEA 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD+V G A AR+ G
Sbjct: 293 RAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYVTLGGEAGARDGG 342
>gi|23100935|ref|NP_694402.1| GTP-dependent nucleic acid-binding protein EngD [Oceanobacillus
iheyensis HTE831]
gi|22779170|dbj|BAC15436.1| GTP-binding protein [Oceanobacillus iheyensis HTE831]
Length = 366
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 264/352 (75%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGIVEVPDERLNKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+++INLEL+ +DLD + KR +EKL + K KD+ AE+A L +++ L
Sbjct: 120 DPIDDIEIINLELILADLDTVNKRYQRVEKLARQKDKDAV------AEQAVLAIVKEGLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R++ ++ + +K L LLT KP +YVANV+E ++ADP N +V +V A+D
Sbjct: 174 NDKPVRALEFSEDQWKIVKGLHLLTSKPTLYVANVSEDEVADPDGNEYVQKVKAHAADEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + + A++E E+ EL +EE+ E+L LG++ESGL LI+++Y+LLGL TYFT+GE+E
Sbjct: 234 AEVIIVCARIEEEIAELEAEEKEEFLEDLGIAESGLDQLIKASYNLLGLATYFTAGEQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT R G+ APQAAG+IH+DFE+GFIRAETV+Y D V A ++ ARE+G V
Sbjct: 294 RAWTFRKGIKAPQAAGIIHTDFERGFIRAETVSYTDLVEAENMTTARERGKV 345
>gi|407940639|ref|YP_006856280.1| GTP-binding protein YchF [Acidovorax sp. KKS102]
gi|407898433|gb|AFU47642.1| GTP-binding protein YchF [Acidovorax sp. KKS102]
Length = 364
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 249/349 (71%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLQQLAEIIH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +DL +EK + + K AK K DA K A L +IQ AL +
Sbjct: 120 DPISDIEVIQTELCLADLGTVEKALNRYTKA-AKSGNDK---DAAKLVALLTRIQAALNE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + + A+ +
Sbjct: 176 GKPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKDYAASQNA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ E+ E+R +LA +G +E GL LIR + LLGL+TYFT+G KE +
Sbjct: 233 PVVAICAKMEAEMAEMSDEDRDMFLAEMGQTEPGLARLIRGAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH DFE+GFIRA+T+A++DF+A A++ G
Sbjct: 293 AWTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFEDFIAYKGEQGAKDAG 341
>gi|313888117|ref|ZP_07821791.1| GTP-binding protein YchF [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845807|gb|EFR33194.1| GTP-binding protein YchF [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 362
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 255/348 (73%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PF TIEPNVG+V VPD RL VLS L+ SQ
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTSAG-AEAANYPFATIEPNVGVVNVPDERLEVLSKLNNSQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ + ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +I+HV+G VDP
Sbjct: 60 RIIYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDENIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+Q+E R K+ KK +A+ + +K E+ LEKI+ AL +G+
Sbjct: 120 LRDIENINLELIFSDLEQVENRYGKVAKKARAEKNLAK-----ERDLLEKIKTALEEGRS 174
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V L++ E+ IK LL+ KP+IYV NVAE +L N +V EV A V
Sbjct: 175 AREVELDEEEKKIIKNYSLLSAKPVIYVCNVAEGELT-KDDNKYVKEVREYAEKTGDEVV 233
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISA++E+E+ L +E+ +L LG+ SGL LI+S+Y LLGL ++ T+GE ET+AWT
Sbjct: 234 VISAEIESEIAALDEDEKELFLEELGLDSSGLDKLIKSSYKLLGLISFITTGEMETRAWT 293
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
++ G AP AAG IH+D E+GFI+A+T++Y D V +GS+A AR+KGL+
Sbjct: 294 VKKGSKAPVAAGKIHTDMERGFIKADTISYKDLVDSGSMANARDKGLI 341
>gi|220933715|ref|YP_002512614.1| GTP-dependent nucleic acid-binding protein EngD [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219995025|gb|ACL71627.1| GTP-binding protein YchF [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 363
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 248/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ G QA N+PFCTI+PNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTRAG-IQAENYPFCTIDPNVGVVPVPDPRLDALAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P ++EFVDIAGLV GASQGEGLGN+FL+HIRE D+I VVRCFE++D++HV G+V
Sbjct: 60 PEKLIPTAMEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIAHVVRCFENDDVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DL+ +EK + +L + K+ D ++ A K EK+Q L +G
Sbjct: 120 DPLSDIEVINTELALADLETVEKALNRLTRSAKSGDKEAV----ARKNVAEKVQAVLAEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR+ L+D ER +++ L+T KP +Y+ANV E + NP ++ V A+ +
Sbjct: 176 KAARAADLDDEERKLLREFHLITAKPAMYIANVNEDGFEN---NPLLDRVREYAAAEHAQ 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +EAE+ +L +E+ E+LA +G+ E GL +IR+ Y LLGL+T+FT+G KE +A
Sbjct: 233 VVPVCAAIEAEIAQLEDDEKTEFLAEMGLDEPGLNRVIRAAYELLGLQTFFTAGPKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT++ G TAP+AA VIH+DFEKGFIRAE V Y+DF+A A++ G
Sbjct: 293 WTVKRGATAPKAAAVIHTDFEKGFIRAEVVGYEDFIAGKGEQGAKDAG 340
>gi|296327680|ref|ZP_06870222.1| GTP-binding protein YchF [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296155211|gb|EFG95986.1| GTP-binding protein YchF [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 364
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 262/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGVVTVPDERLNELAKIINPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEF+DIAGLVKGAS+GEG GNKFLS+IR +I QVVRCF+D++I HV+G VDP D
Sbjct: 65 PATVEFIDIAGLVKGASKGEGRGNKFLSNIRSTSAICQVVRCFDDDNITHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ I+K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETIDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + S V +S
Sbjct: 181 LDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVREFTRSIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VE+EL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVESELQEMDEESKQEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G++ L Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDNFIKNSGWKMSQENGVL-------RLEGKDYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|338971772|ref|ZP_08627154.1| GTP-binding and nucleic acid-binding protein YchF
[Bradyrhizobiaceae bacterium SG-6C]
gi|338235080|gb|EGP10188.1| GTP-binding and nucleic acid-binding protein YchF
[Bradyrhizobiaceae bacterium SG-6C]
Length = 365
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 242/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SAQIIPTQLTFVDIAGLVRGASKGEGLGNQFLANIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DLD +EKR++ L KK K D SK + D +E+ + L DG
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDNLSKKAKGGDKDSKEQLD----LVERALKLLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP R + E + + L LLT KP++YV NV ES A N V + A +
Sbjct: 177 KPTRGMERKSEEERNFRMLGLLTSKPVLYVCNVEESSAAT--GNSFSQAVFDHAKKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVVISAKIESEIATLSREERVDFLDTLGLEEAGLDRLIRAGYELLHLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AY+D+VA A AR+ G
Sbjct: 295 WTITKGTKAPAAAGVIHTDFEKGFIRAETIAYEDYVALNGEAGARDAG 342
>gi|289436045|ref|YP_003465917.1| GTP-binding protein YchF [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|422420385|ref|ZP_16497340.1| GTP-binding protein YchF [Listeria seeligeri FSL N1-067]
gi|422423522|ref|ZP_16500475.1| GTP-binding protein YchF [Listeria seeligeri FSL S4-171]
gi|289172289|emb|CBH28835.1| GTP-binding protein YchF [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|313631466|gb|EFR98777.1| GTP-binding protein YchF [Listeria seeligeri FSL N1-067]
gi|313635832|gb|EFS01823.1| GTP-binding protein YchF [Listeria seeligeri FSL S4-171]
Length = 366
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 252/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K++ A
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEFNVLVKLRDAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR+V ++ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAVEFSEDEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAAGEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E++VE+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKVEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|297585579|ref|YP_003701359.1| GTP-binding protein YchF [Bacillus selenitireducens MLS10]
gi|297144036|gb|ADI00794.1| GTP-binding protein YchF [Bacillus selenitireducens MLS10]
Length = 366
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL L+ +
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLDKLTQMVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PDKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFSDDNITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+ VINLEL+ +D++ +EKR+ K++K + KD + + D L K+++A D
Sbjct: 120 DPIRDIQVINLELILADMESVEKRIGKVEKMARQKDKDAVFEYDV----LVKLREAFEDE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ + + + LLTMKP++YVANV E ++ D N HV +V A + S
Sbjct: 176 KPARSIDFTKEQAKLVHGMHLLTMKPVLYVANVGEDEILDIDGNEHVQKVRAFAEEENSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ EL EE+ E+L LG++ESGL LI++ Y+LLGL T+FT+G++E +A
Sbjct: 236 VIVISAKIEEEIAELEGEEKQEFLDDLGIAESGLDQLIKAAYNLLGLDTFFTAGKQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTIR G APQAAGVIH+DFE+GFIRAE V+Y+D AGS+ AA+E G V
Sbjct: 296 WTIRRGTKAPQAAGVIHTDFERGFIRAEVVSYEDLTDAGSMNAAKEAGNV 345
>gi|110634508|ref|YP_674716.1| GTP-dependent nucleic acid-binding protein EngD [Chelativorans sp.
BNC1]
gi|110285492|gb|ABG63551.1| GTP-binding protein YchF [Chelativorans sp. BNC1]
Length = 367
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 248/352 (70%), Gaps = 13/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPRL ++ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLKKIAEIAA 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ VP + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKETVPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D D + EL+ +DL+ +E+R+ +++K GK K++ S L +E+ + L
Sbjct: 121 DPVADADTVETELMLADLESLERRIVQVRKRATGKEKEAMSILP------VMEEALKLLQ 174
Query: 232 DGKPARSVT--LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
DGKP R V L+ ++ L LLT KP++YV NVAE D A N H + V +A
Sbjct: 175 DGKPVRLVAAELDPEGMRILRSLNLLTSKPVLYVCNVAEGDAAT--GNAHTSAVEKMAEA 232
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISA +EAE+ +LP EE EYL ++G+ E GL LIR+ Y LL L T+FT+G K
Sbjct: 233 QGARTVIISAAIEAEVAQLPQEEAAEYLEAMGLHEPGLDRLIRAGYELLDLITFFTAGPK 292
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWT++ G APQAAGVIH+DFE+GFIRA+T+AYDDFV G AARE G
Sbjct: 293 EARAWTVQKGAKAPQAAGVIHTDFERGFIRAQTIAYDDFVQLGGETAAREAG 344
>gi|329118941|ref|ZP_08247636.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
bacilliformis ATCC BAA-1200]
gi|327464969|gb|EGF11259.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
bacilliformis ATCC BAA-1200]
Length = 363
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 251/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D +IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDENIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK + +++GK S K DA+K A LE + L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--VREGKRAKSGDK---DAQKLVALLESLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP RS L+ + ++ L LLT+KP +YVANVAE +NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEQTALLRPLFLLTVKPAMYVANVAEDGF---DNNPHLARLQELAAKENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL EE+ E+LA +G+ E GL L+R+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVALCAAMESEIAELEDEEKAEFLAEMGLEEPGLNRLVRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DFVA G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVALGGEAKAKEAG 340
>gi|260431156|ref|ZP_05785127.1| GTP-binding protein YchF [Silicibacter lacuscaerulensis ITI-1157]
gi|260414984|gb|EEX08243.1| GTP-binding protein YchF [Silicibacter lacuscaerulensis ITI-1157]
Length = 365
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 243/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGDVAVPDARLDKLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I EL+ +DL+ IEKR L +K K D +++ ++ AA QQ L DG
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAAA----QQMLEDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++D + + K L LLT KP++YV NV+E D A N + V +A++ +
Sbjct: 177 KPARLVEVSDEDAKAWKNLQLLTTKPVLYVCNVSEEDAAT--GNEYSERVAKMAAEQGNA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E++ L +E +L +G+ E GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAKIEEEISLLEPDEAQMFLQEMGLEEPGLDRLIRAGYDLLKLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AYDDFVA A+E G
Sbjct: 295 WTIRRGTLAPQAAGVIHGDFEKGFIRAETIAYDDFVACNGEQGAKEAG 342
>gi|259047764|ref|ZP_05738165.1| GTP-dependent nucleic acid-binding protein EngD [Granulicatella
adiacens ATCC 49175]
gi|259035955|gb|EEW37210.1| GTP-dependent nucleic acid-binding protein EngD [Granulicatella
adiacens ATCC 49175]
Length = 366
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 253/350 (72%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDLRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ INLELV +DL+ ++KR+ ++ K K KD + AE A LEKI+ L +G
Sbjct: 120 DPIADIETINLELVLADLESVDKRIARVAKIAKTKDKDAV----AELAVLEKIKPVLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ AR++ D E +K L LLT KP++Y+AN++E D+ + G N +V V + A+ +
Sbjct: 176 QLARTIEFTDEELPIVKGLFLLTTKPMLYIANISEDDVMEGGHNQYVQLVEDYAAKEDAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A++E E+ EL EE+ +L +G+ SGL LI+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VVVICAKIEEEVAELEEEEKQAFLEEMGIEVSGLDILIQKAYHLLGLATYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT R GM APQ AG+IHSDFE+GFIRAETVAY D + GS+ AA+E G V
Sbjct: 296 WTFRRGMKAPQCAGIIHSDFERGFIRAETVAYADLLEYGSMTAAKENGKV 345
>gi|322386428|ref|ZP_08060057.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
cristatus ATCC 51100]
gi|321269514|gb|EFX52445.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
cristatus ATCC 51100]
Length = 376
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/359 (53%), Positives = 255/359 (71%), Gaps = 15/359 (4%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 2 EKIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLT 60
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 61 ELIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMRE 120
Query: 171 NGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAA 222
G+ VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE
Sbjct: 121 QGRESDFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNV 174
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
L+KI+ L DG AR+V + E+ +K L LLT KP++YVANV+E ++ADP + +V +
Sbjct: 175 LQKIKPVLEDGLSARTVEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQ 234
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
+ A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL T
Sbjct: 235 IREFAATENAEVVVISARAEEEISELDDEDKAEFLEAIGLTESGVDKLTRAAYHLLGLGT 294
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
YFT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 295 YFTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 353
>gi|418403967|ref|ZP_12977442.1| GTP-binding protein YchF [Sinorhizobium meliloti CCNWSX0020]
gi|359502107|gb|EHK74694.1| GTP-binding protein YchF [Sinorhizobium meliloti CCNWSX0020]
Length = 367
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 249/353 (70%), Gaps = 15/353 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
P D D I EL+ +DLD +E+R E+ +K GK K+S ++L +E + L
Sbjct: 121 HPVEDADTIETELMLADLDSLERRAEQTRKRATGKDKESMAQL------PIMEASLKLLQ 174
Query: 232 DGKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
+GKP R++ L+ + D ++ L LLT P++YV NVAESD A N H V +A
Sbjct: 175 EGKPVRTL-LSKLDADELRILQSLNLLTSHPVLYVCNVAESDAAT--GNEHTRAVEKMAR 231
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + V ISA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ Y LL L TYFT G
Sbjct: 232 EQGAETVVISAAIESEVAQLPEEEAKEFLAALGLEEAGLDRLIRAGYKLLDLITYFTVGP 291
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KET+AWTI G APQAAGVIHSDFE+GFIR+ T+AYDD++A G A+E G
Sbjct: 292 KETRAWTIPRGTKAPQAAGVIHSDFERGFIRSNTIAYDDYIAYGGENGAKEAG 344
>gi|209966681|ref|YP_002299596.1| GTP-binding protein YchF [Rhodospirillum centenum SW]
gi|209960147|gb|ACJ00784.1| GTP-binding protein YchF [Rhodospirillum centenum SW]
Length = 365
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 245/367 (66%), Gaps = 7/367 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ A+AAN+PFCTIEPNVG V VPDPRL L+ ++K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTSTAAAEAANYPFCTIEPNVGRVGVPDPRLDRLAVIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VP +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G V
Sbjct: 61 SAKTVPTQLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D + + EL+ +DLD +EKR+ L KK K D ++K D +E+ L DG
Sbjct: 121 DPVRDAETVETELMLADLDSLEKRLPPLQKKAKGGDKEAKATAD----LMERALTVLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V L+ E +Q+ LLT KP++YV NV E+ A N V +A +
Sbjct: 177 KPARTVELSPEEVSGFRQMQLLTGKPVLYVCNVEEASAA--AGNAFSARVEAMAKAQGAA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA +EAE+++LP E++ EYLAS+G+ E GL LIR+ Y LL L T+FT G KE +A
Sbjct: 235 SVVISAAIEAEVSQLPPEDKAEYLASMGLEEPGLNRLIRAGYGLLNLLTFFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT+R G AP+AAGVIH+DFE+GFI+AET+ ++ +V G A+E G + +
Sbjct: 295 WTVRRGAKAPEAAGVIHTDFERGFIKAETIDFETYVTLGGEGPAKEAGKMRMEGKEYVVQ 354
Query: 414 SYKYFHW 420
FH+
Sbjct: 355 DGDIFHF 361
>gi|150390656|ref|YP_001320705.1| GTP-binding protein YchF [Alkaliphilus metalliredigens QYMF]
gi|149950518|gb|ABR49046.1| GTP-binding protein YchF [Alkaliphilus metalliredigens QYMF]
Length = 364
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 260/348 (74%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPN+G+VAVPD RL L + SQ
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNIGVVAVPDYRLSNLKEMYNSQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EF DIAGLVKGAS+GEGLGNKFLSHIREV+SI+ VVRCFED+++ HV+G VDP
Sbjct: 60 KVIPAAIEFYDIAGLVKGASKGEGLGNKFLSHIREVESIVHVVRCFEDSNVTHVDGNVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+ SDL+ +EKR+ KL+K + K +S L E L ++Q L G A
Sbjct: 120 LRDIETINLELILSDLESVEKRIPKLEK-QVKLDKSLL---PELELLHQLQGVLEQGLSA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 295
RS LN+ ++ +K+ LL+ KPIIYVANV+E ++ D GS NPHV + A + S V
Sbjct: 176 RSQDLNEDQQKMLKEFTLLSAKPIIYVANVSEDEVGDGGSDNPHVTTLREFAMEEGSEVV 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++EAE++EL EE+ +L LG+++SGL L++++YSLLGL +Y T+G KE +AWT
Sbjct: 236 VICAKIEAEISELEEEEKQGFLEDLGLTQSGLDRLVQASYSLLGLISYLTAGPKEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I GM APQAAG IH+DFE+GFIRAE VA+D + AGS AA+EKG V
Sbjct: 296 ITRGMKAPQAAGKIHTDFERGFIRAEVVAFDKLMEAGSHTAAKEKGHV 343
>gi|15966110|ref|NP_386463.1| GTP-dependent nucleic acid-binding protein EngD [Sinorhizobium
meliloti 1021]
gi|334317114|ref|YP_004549733.1| GTP-binding protein YchF [Sinorhizobium meliloti AK83]
gi|384530242|ref|YP_005714330.1| GTP-binding protein YchF [Sinorhizobium meliloti BL225C]
gi|384535277|ref|YP_005719362.1| putative GTP-dependent nucleic acid-binding protein engD
[Sinorhizobium meliloti SM11]
gi|407721416|ref|YP_006841078.1| GTP-dependent nucleic acid-binding protein engD [Sinorhizobium
meliloti Rm41]
gi|433614182|ref|YP_007190980.1| GTP-binding protein YchF [Sinorhizobium meliloti GR4]
gi|15075380|emb|CAC46936.1| Putative GTP-dependent nucleic acid-binding protein EngD
[Sinorhizobium meliloti 1021]
gi|333812418|gb|AEG05087.1| GTP-binding protein YchF [Sinorhizobium meliloti BL225C]
gi|334096108|gb|AEG54119.1| GTP-binding protein YchF [Sinorhizobium meliloti AK83]
gi|336032169|gb|AEH78101.1| putative GTP-dependent nucleic acid-binding protein engD
[Sinorhizobium meliloti SM11]
gi|407319648|emb|CCM68252.1| GTP-dependent nucleic acid-binding protein engD [Sinorhizobium
meliloti Rm41]
gi|429552372|gb|AGA07381.1| GTP-binding protein YchF [Sinorhizobium meliloti GR4]
Length = 367
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 248/353 (70%), Gaps = 15/353 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
P D D I EL+ +DLD +E+R E+ +K GK K+S ++L +E + L
Sbjct: 121 HPVEDADTIETELMLADLDSLERRAEQTRKRATGKDKESMAQL------PIMEASLKLLQ 174
Query: 232 DGKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
+GKP R++ L+ + D ++ L LLT P++YV NVAESD A N H V +A
Sbjct: 175 EGKPVRTL-LSKLDADELRILQSLNLLTSHPVLYVCNVAESDAAT--GNEHTRAVEKMAR 231
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + V ISA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ Y LL L TYFT G
Sbjct: 232 EQGAETVVISAAIESEVAQLPEEEAKEFLAALGLEEAGLDRLIRAGYKLLDLITYFTVGP 291
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KET+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++ G A+E G
Sbjct: 292 KETRAWTIPRGTKAPQAAGVIHSDFERGFIRANTIAYDDYIGYGGENGAKEAG 344
>gi|429727315|ref|ZP_19262089.1| GTP-binding protein YchF [Peptostreptococcus anaerobius VPI 4330]
gi|429152767|gb|EKX95577.1| GTP-binding protein YchF [Peptostreptococcus anaerobius VPI 4330]
Length = 365
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 261/349 (74%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+VL L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDQRLNVLKDLYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+++VHV+G ++
Sbjct: 60 KIVQTAIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSNVVHVDGSINS 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K K D + E L+ +++ L +GK
Sbjct: 120 LRDIETINLELIFSDMEILDRRITKTTKALKADKTLQ----GELDILKNLKETLEEGKSI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 295
R++ L++ E + L LL+ KP+IYVANV+E DLA+ G+ N V V A+ S V
Sbjct: 176 RTMDLSEDEWKFVNGLDLLSSKPVIYVANVSEDDLANDGADNQMVAAVREFAATENSEVV 235
Query: 296 TISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+EAE++EL + EE++E+L +LG+ +SGL LI+S+Y LLGL ++ T+G +E +AW
Sbjct: 236 VICAQIEAEISELETDEEKLEFLETLGLEQSGLDKLIKSSYHLLGLISFLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIR G AP+A G IHSD E+GFI+AET+AY+D + G++AAA+EKGLV
Sbjct: 296 TIRNGAKAPEAGGKIHSDIERGFIKAETIAYEDLIEHGTMAAAKEKGLV 344
>gi|421527417|ref|ZP_15974019.1| GTP-binding protein YchF [Fusobacterium nucleatum ChDC F128]
gi|402256452|gb|EJU06932.1| GTP-binding protein YchF [Fusobacterium nucleatum ChDC F128]
Length = 364
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGVVTVPDERLNELAKIINPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEF+DIAGLVKGAS+GEG GNKFLS+IR +I QVVRCF+D++I HV+G VDP D
Sbjct: 65 AATVEFIDIAGLVKGASKGEGRGNKFLSNIRSTSAICQVVRCFDDDNITHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ ++K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETVDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V A + S V +S
Sbjct: 181 LDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVREFAKGIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VE+EL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVESELQEMDEESKKEFLEALGVQEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVL-------RLEGKEYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VHDGDLMEFLFNV 364
>gi|365859125|ref|ZP_09399003.1| GTP-binding protein YchF [Acetobacteraceae bacterium AT-5844]
gi|363713024|gb|EHL96683.1| GTP-binding protein YchF [Acetobacteraceae bacterium AT-5844]
Length = 364
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 243/348 (69%), Gaps = 8/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPNVG VAVPD RL ++ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTQTASAQAANYPFCTIEPNVGRVAVPDARLQTIAKIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K +P S+EFVDIAGLV+GAS+GEGLGN+FL++IRE D+I+ V+RCFED D+ HV G V
Sbjct: 61 SAKIIPTSLEFVDIAGLVRGASKGEGLGNQFLANIRETDAIVHVLRCFEDGDVTHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D D+I EL+ +D+D +EKR L K+ + D ++ A+ A +E I AL DG
Sbjct: 121 DPLRDADIIETELMLADMDSLEKRSVNLAKRARGGDKEAS----AQMALIEPILAALRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+ + E + +++L LLT KP++YV NV E A+ N H +V A +
Sbjct: 177 KPART-AIPKGEEEGVRRLQLLTSKPVLYVCNVEEGSAAE--GNAHSAKVFERAKAEGAK 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA +EAE++++ +R E+L LG+S+SGL +I + Y LLGL TYFT G KE +A
Sbjct: 234 AVVVSAAIEAEISQMDEADRGEFLEGLGLSDSGLDRVIAAGYGLLGLITYFTVGPKEARA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI GM APQAAGVIH DFE+GFI AET+AYDD+VA G AA+E G
Sbjct: 294 WTIIKGMKAPQAAGVIHGDFERGFIAAETIAYDDYVALGGEQAAKEAG 341
>gi|335032162|ref|ZP_08525568.1| GTP-binding protein YchF [Streptococcus anginosus SK52 = DSM 20563]
gi|333767713|gb|EGL44940.1| GTP-binding protein YchF [Streptococcus anginosus SK52 = DSM 20563]
Length = 371
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/355 (53%), Positives = 255/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SNFVDPMADIETINLELILADLESINKRYARVEKVARTQKDKDSV------AEFHVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L +G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++
Sbjct: 174 KPVLENGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIEYVQQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++VE+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKVEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT R GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFRRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|261855771|ref|YP_003263054.1| GTP-binding protein YchF [Halothiobacillus neapolitanus c2]
gi|261836240|gb|ACX96007.1| GTP-binding protein YchF [Halothiobacillus neapolitanus c2]
Length = 364
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/347 (53%), Positives = 250/347 (72%), Gaps = 6/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + QA N+PFCTIEPNVGIVA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTK-ANIQAENYPFCTIEPNVGIVAMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I QVVRCF+++DI+HV GKV
Sbjct: 60 PERVLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETDAIAQVVRCFDNDDIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+D+IN ELV +DLD + + +++ KA S + A KA LEKI L + K
Sbjct: 120 DPLSDIDIINTELVLADLDIVTRNLDRAI--KASKSGVNKEAIARKAVLEKIMVGLNEVK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R++ L+ E I+ L LLT+KPI+Y+ANV+E + NP++ V A+ +
Sbjct: 178 PVRALGLSSEELAVIRDLQLLTVKPIMYIANVSEDGFTN---NPYLEAVEAHAAKENAPV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A +EAE+ +L E+R E+L+ +G SE GL +IR+ Y+LLGL+TYFT+G KE +AW
Sbjct: 235 VPVCATIEAEIMQLDDEDRDEFLSEIGQSEPGLNRVIRAGYALLGLQTYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G TAPQAAGVIH+DFE+GFIRA+T+AYDDF+ A+E G
Sbjct: 295 TIHKGDTAPQAAGVIHTDFERGFIRAQTIAYDDFILYKGEQGAKEAG 341
>gi|422340098|ref|ZP_16421053.1| GTP-binding protein YchF [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370343|gb|EHG17728.1| GTP-binding protein YchF [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 364
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 263/373 (70%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGVVTVPDERLNELAKIINPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEF+DIAGLVKGAS+GEG GNKFLS+IR +I QVVRCF+D++I HV+G VDP D
Sbjct: 65 AATVEFIDIAGLVKGASKGEGRGNKFLSNIRSTSAICQVVRCFDDDNITHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
+DVIN EL+F+D++ ++K +EK K +++K+KE E + L K+++ L + K ++
Sbjct: 125 IDVINTELIFADIETVDKAIEK----HEKLARNKIKESVELMSVLPKVKKHLEEFKLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V A + S V +S
Sbjct: 181 LDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVREFAKGIGSEVVVVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VE+EL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 239 AKVESELQEMDEESKKEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIRI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVL-------RLEGKEYI 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VHDGDLMEFLFNV 364
>gi|210617177|ref|ZP_03291444.1| hypothetical protein CLONEX_03666 [Clostridium nexile DSM 1787]
gi|210149452|gb|EEA80461.1| hypothetical protein CLONEX_03666 [Clostridium nexile DSM 1787]
Length = 365
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 258/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KIVPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K K A++ ++ K E LE+I+ L + K A
Sbjct: 120 IRDIETINLELIFSDIEMLERRIAKAVK-VARNDKAVAK---ELELLERIKAHLEENKMA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS T+ND + + ++ LLT KP+I+ ANV E DLA+ G+ N V V A
Sbjct: 176 RSFTVNDEDEQALLESYNLLTYKPVIFAANVTEDDLANDGADNDGVQAVKEYAEKEGCEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++YSLLGL +Y T+GE+E +AW
Sbjct: 236 FVVCAQIEQEIAELDDDEKKMFLEDLGLEESGLEKLIKASYSLLGLISYLTAGEQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFIRAE V+YDD + G+ AA+EKGLV
Sbjct: 296 TIKKGTKAPQAAGKIHSDFERGFIRAEIVSYDDLMDCGTYTAAKEKGLV 344
>gi|333375790|ref|ZP_08467590.1| GTP-dependent nucleic acid-binding protein EngD [Kingella kingae
ATCC 23330]
gi|332969578|gb|EGK08596.1| GTP-dependent nucleic acid-binding protein EngD [Kingella kingae
ATCC 23330]
Length = 363
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 251/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKSG-IEAANYPFCTIEPNVGIVEVPDPRMDELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++I+HV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK + L++GK S K DA+K A LEK+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--LREGKRAKSGDK---DAQKLVAILEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP R+ L+ E IK L LLT KP +YV NVAE + N H+ + LA+ +
Sbjct: 175 GKPVRAFGLDKEEMALIKPLFLLTAKPAMYVGNVAEDGFEN---NSHLARLQELAARENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL E+VE+LA +G++E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAALESEIAELDDAEKVEFLAEMGLAEPGLNRLIRAGYDLLGLQTYFTAGVKEIR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDF+A G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFIALGGEAKAKEAG 340
>gi|422810821|ref|ZP_16859232.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J1-208]
gi|378751026|gb|EHY61617.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J1-208]
Length = 366
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 252/352 (71%), Gaps = 10/352 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
P D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A
Sbjct: 120 APLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV------AEYNVLVKLREAFE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+
Sbjct: 174 NDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E
Sbjct: 234 SEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G V
Sbjct: 294 RAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKV 345
>gi|351729050|ref|ZP_08946741.1| GTP-binding protein YchF [Acidovorax radicis N35]
Length = 364
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 248/349 (71%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLQQLAEIIS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +D+ +EK + + K AK K DA K A L +IQ AL +
Sbjct: 120 DPISDIEVIQTELCLADMGTVEKALNRYTKA-AKSGNDK---DAAKLVALLTRIQAALNE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + A+ +
Sbjct: 176 GKPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKEYAASQNA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ E+ E+R +LA +G +E GL LIR + LLGL+TYFT+G KE +
Sbjct: 233 PVVAICAKMEAEMAEMSDEDRDMFLAEMGQTEPGLARLIRGAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH DFE+GFIRA+T+A++DF+A A++ G
Sbjct: 293 AWTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFEDFIALKGEQGAKDAG 341
>gi|421566169|ref|ZP_16011926.1| GTP-binding protein EngD [Neisseria meningitidis NM3081]
gi|402340886|gb|EJU76075.1| GTP-binding protein EngD [Neisseria meningitidis NM3081]
Length = 363
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVG+V VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGVVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|326796208|ref|YP_004314028.1| GTP-binding protein YchF [Marinomonas mediterranea MMB-1]
gi|326546972|gb|ADZ92192.1| GTP-binding protein YchF [Marinomonas mediterranea MMB-1]
Length = 363
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 250/347 (72%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN GIVA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGIVAMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + ++EFVDIAGLV+GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV +V
Sbjct: 60 PERVLATTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P +D++VINLEL+F+DL+ I+K++ + K ++ + A KA LE I+Q L DGK
Sbjct: 120 NPTADIEVINLELIFADLESIDKQIFRTAKTAKSGNKDAI---AHKAFLESIKQHLEDGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R++ D + +KQL LLT KP +Y+ANV+E + NPH+ V +A+ +
Sbjct: 177 PVRTMEFTDDQAKEVKQLHLLTTKPTMYIANVSEDGFEN---NPHLEVVTKIAASEGAMV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I Q+EAE++EL +EE ++L +G+SE GL +IR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VPICNQLEAEISELDAEEMQDFLDEMGMSEPGLDRVIRAGYELLGLQTYFTAGVKEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T++ G TAPQ+AGVIH+DFEKGFIRAE V+YDDF+ A++ G
Sbjct: 294 TVKQGATAPQSAGVIHTDFEKGFIRAEVVSYDDFIQYQGENGAKDAG 340
>gi|331269344|ref|YP_004395836.1| GTP-binding protein YchF [Clostridium botulinum BKT015925]
gi|329125894|gb|AEB75839.1| GTP-binding protein YchF [Clostridium botulinum BKT015925]
Length = 365
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 252/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + +++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYETK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF+D++IVHV G +DP
Sbjct: 60 KKIYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFQDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGKP 235
D++ INLEL+ +DL+ IE+R EK + ++S +KE AE LEK++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TVRSARSGVKEAKAELPVLEKVKAHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS+ L E++ +K L+T KPI+YV+N+ E DL + N V +V A + S
Sbjct: 176 VRSLELTKDEQEIVKGFFLITSKPILYVSNICEDDLVSGNTENDFVKKVKQYAKEEDSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+T+ A++E EL+ L EER E L+ G+ E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLKEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI G AP+AAG IH+D E+GFIRAE V+YD V GS AAA+EKGL
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYDALVECGSEAAAKEKGL 343
>gi|421499818|ref|ZP_15946848.1| GTP-binding protein YchF [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|402269350|gb|EJU18688.1| GTP-binding protein YchF [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 364
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 261/373 (69%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ + + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLQALAKIIQPQRIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA+QGEGLGNKFLS+IR +I QVVRCFED ++VHV+G VDP D
Sbjct: 65 AATVEFVDIAGLVKGAAQGEGLGNKFLSNIRSTAAICQVVRCFEDENVVHVDGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+DL+ ++K +EK K K +Q+K+KE E + L K + L + + ++
Sbjct: 125 IEVINTELIFADLETVDKAIEKHK----KLAQNKIKESVELMSVLPKAKAHLENFQLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ + E+ +K LLT+KP+I+ ANVAE DLA+ N +V +V A + S V +S
Sbjct: 181 FSFTEAEKVLLKNYQLLTLKPMIFAANVAEDDLAE--GNSYVEKVKEYAEKMGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E R E+L SLGV E+GL LIR+ + LLGL+TYFT+G KE +AWTI
Sbjct: 239 AKVEAELQEMDEESRQEFLESLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIHI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+Y DF+ A+E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYQDFIQYKGWKGAQEVGVL-------RLEGKEYT 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|386815304|ref|ZP_10102522.1| GTP-binding protein YchF [Thiothrix nivea DSM 5205]
gi|386419880|gb|EIJ33715.1| GTP-binding protein YchF [Thiothrix nivea DSM 5205]
Length = 363
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/347 (54%), Positives = 253/347 (72%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G QAAN+PFCTIEPNVGIV +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IQAANYPFCTIEPNVGIVPMPDPRLDALATIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GASQGEGLGNKFL+HIRE D+I QVVRCFE++DI+HV GK+
Sbjct: 60 PERIVPTTMEFVDIAGLVAGASQGEGLGNKFLAHIRETDAIAQVVRCFENDDIIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+D IN ELV +DL+ EK + +L + AK L A+KA E++ + L DG
Sbjct: 120 DPASDIDTINTELVLADLETAEKAVNRLTR-SAKSGDKDLV--AQKAMAERMYKHLSDGN 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
ARS+ + ER +++L L+T+KP++++ANV E + NP ++ V +A+ +
Sbjct: 177 SARSLEMTPEERLLLRELHLITIKPLMFIANVNEDGFEN---NPFLDVVQEIAAREGAEV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A +E EL++L ER E+LAS+G+ E GL +IR+ YSLLGL+TYFT+G KE +AW
Sbjct: 234 VPVCASIEEELSQLEDVERDEFLASMGLEEPGLNRVIRAGYSLLGLQTYFTAGVKEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T+R TAPQAAGVIH+DFE+GFIRA+T+AYDDF+A A+E G
Sbjct: 294 TVRKNATAPQAAGVIHTDFERGFIRAQTIAYDDFIAYRGEQGAKEAG 340
>gi|395005592|ref|ZP_10389467.1| GTP-binding protein YchF [Acidovorax sp. CF316]
gi|394316519|gb|EJE53243.1| GTP-binding protein YchF [Acidovorax sp. CF316]
Length = 364
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 248/349 (71%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAQLASIIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +DL ++K + + K AK K DA K A L +IQ AL +
Sbjct: 120 DPISDIEVIQTELCLADLGTVDKALNRYSKA-AKSGNDK---DAAKLVALLTRIQAALNE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + A+ +
Sbjct: 176 GKPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKEYAASQNA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ E+ E+R +LA +G SE GL LIR + LLGL+TYFT+G KE +
Sbjct: 233 PVVAICAKMEAEMAEMGDEDRDMFLAEMGQSEPGLARLIRGAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH DFE+GFIRA+T+A+DD++A A++ G
Sbjct: 293 AWTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFDDYIALKGEQGAKDAG 341
>gi|70727630|ref|YP_254546.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
haemolyticus JCSC1435]
gi|68448356|dbj|BAE05940.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 365
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ + K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLNKLTEMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L +I++AL +G
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPRIEKMARQKDKTAEM----EMRILSRIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 DPVRSLDFNEEDQRYVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAAKEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E+R +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDREMFLEDLGIEEPGLDVLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT R GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G + L
Sbjct: 295 WTFRQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEHGGEQGAKEAG-------KQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|334132964|ref|ZP_08506719.1| GTP-dependent nucleic acid-binding protein EngD [Methyloversatilis
universalis FAM5]
gi|333441874|gb|EGK69846.1| GTP-dependent nucleic acid-binding protein EngD [Methyloversatilis
universalis FAM5]
Length = 363
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 253/349 (72%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPRL LS + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRLAQLSEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHVNG+V
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDENVVHVNGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +E+ + + GK S K DA+K A LEK+ L +
Sbjct: 120 DPIADIETIVTELALADLAAVERTIA--RDGKKAKSGDK---DAQKLVAVLEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR++ L+D ++ IK LCLLT+KP +YV NV E +NP+++ + A+ +
Sbjct: 175 GKPARTLGLSDDDKVIIKPLCLLTIKPAMYVGNVLEDGFE---NNPYLDRLREFAAKEGA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V++ A++EAEL +L E++ +LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVSVCAKIEAELADLEDEDKKAFLADLGLDEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+T+A++DF+A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQTIAFEDFIAYKGEQGAKEAG 340
>gi|39937414|ref|NP_949690.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris CGA009]
gi|192293197|ref|YP_001993802.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris TIE-1]
gi|39651273|emb|CAE29795.1| putative GTP-binding protein [Rhodopseudomonas palustris CGA009]
gi|192286946|gb|ACF03327.1| GTP-binding protein YchF [Rhodopseudomonas palustris TIE-1]
Length = 365
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/351 (54%), Positives = 242/351 (68%), Gaps = 13/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALM-- 231
P +D++ I EL+ SDL+ +EKR++ L KK K D SK + LE + +AL
Sbjct: 121 APLADIETIETELMLSDLESLEKRVDNLTKKAKGGDKDSKEQ-------LELVTRALTLL 173
Query: 232 -DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
DGKPAR + E + + L LLT KP++YV NV E A+ N +VM A +
Sbjct: 174 RDGKPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNKFSEQVMARAKEE 231
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V ISA++E+E+ L EER ++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 232 GAVAVVISAKIESEIATLSKEERTDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKE 291
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD++ G A AR+ G
Sbjct: 292 ARAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYIRLGGEAGARDGG 342
>gi|379794860|ref|YP_005324858.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|386830035|ref|YP_006236689.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|417799617|ref|ZP_12446753.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21310]
gi|418657098|ref|ZP_13218877.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-105]
gi|334272932|gb|EGL91284.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21310]
gi|356871850|emb|CCE58189.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|375031636|gb|EHS24910.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-105]
gi|385195427|emb|CCG15036.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 365
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILNTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|153809805|ref|ZP_01962473.1| hypothetical protein RUMOBE_00186 [Ruminococcus obeum ATCC 29174]
gi|149833983|gb|EDM89063.1| GTP-binding protein YchF [Ruminococcus obeum ATCC 29174]
Length = 371
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 254/349 (72%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +L S+
Sbjct: 7 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLKLLGDFYHSK 65
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +DP
Sbjct: 66 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDPNVIHVDGSIDP 125
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K+ K D ++ + D L+++++ L DG A
Sbjct: 126 LRDIETINLELIFSDIEILERRIAKVTKTARMDKEAAKELD----FLQRVKKHLEDGNMA 181
Query: 237 RSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
++ L N+ E + LLT KP+IY ANV+E DLAD G SN HV V A++ +S
Sbjct: 182 ITMELENEDEEAWMGTYNLLTWKPVIYAANVSEDDLADDGESNAHVQAVRKYAAEQKSEV 241
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I A++E E++EL +E+ +L LG+ ESGL L+R++Y LLGL ++ TSGE ET+AW
Sbjct: 242 FVICAEIEEEISELDDDEKKMFLEDLGLKESGLEKLVRASYRLLGLMSFLTSGEDETRAW 301
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGLV
Sbjct: 302 TIKIGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLV 350
>gi|416350635|ref|ZP_11680937.1| GTP-binding protein YchF [Clostridium botulinum C str. Stockholm]
gi|338196200|gb|EGO88408.1| GTP-binding protein YchF [Clostridium botulinum C str. Stockholm]
Length = 365
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 253/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + +++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYETK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF+D++IVHV G +DP
Sbjct: 60 KKIYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFQDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGKP 235
D++ INLEL+ +DL+ IE+R EK + ++S +KE E LEK++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TVRSARSGVKEAKIELPILEKVKAHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS+ L E++ +K L+T KPI+YV+N+ E DL + N V +V A + S
Sbjct: 176 VRSLELTKDEQEIVKGFFLITSKPILYVSNICEDDLVSGNTENEFVKKVKEYAKEEDSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI G AP+AAG IH+D E+GFIRAE V+Y+D V GS AAA+EKGL
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYNDLVECGSEAAAKEKGL 343
>gi|350572069|ref|ZP_08940378.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
wadsworthii 9715]
gi|349790657|gb|EGZ44560.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
wadsworthii 9715]
Length = 363
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 249/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK + ++GK S K DA+K EK+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--TREGKRAKSGDK---DAQKLVTLCEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP RS L+ E ++ L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEELAMLRPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL EE+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAALESEIAELEDEEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVTLGGEAKAKEAG 340
>gi|385337426|ref|YP_005891299.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis WUE 2594]
gi|433476262|ref|ZP_20433597.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
88050]
gi|433516331|ref|ZP_20473094.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2004090]
gi|433518274|ref|ZP_20475014.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
96023]
gi|433524770|ref|ZP_20481425.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97020]
gi|433527609|ref|ZP_20484221.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3652]
gi|433531054|ref|ZP_20487636.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3642]
gi|433531996|ref|ZP_20488563.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2007056]
gi|433535241|ref|ZP_20491773.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2001212]
gi|319409840|emb|CBY90149.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis WUE 2594]
gi|432208117|gb|ELK64096.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
88050]
gi|432251452|gb|ELL06819.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2004090]
gi|432252012|gb|ELL07372.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
96023]
gi|432257821|gb|ELL13114.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97020]
gi|432264636|gb|ELL19836.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3642]
gi|432266509|gb|ELL21692.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3652]
gi|432268641|gb|ELL23808.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2007056]
gi|432269873|gb|ELL25021.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2001212]
Length = 363
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|326791428|ref|YP_004309249.1| GTP-binding protein YchF [Clostridium lentocellum DSM 5427]
gi|326542192|gb|ADZ84051.1| GTP-binding protein YchF [Clostridium lentocellum DSM 5427]
Length = 364
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 250/348 (71%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + SQ
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTKAG-AESANYPFCTIEPNVGVVAVPDKRLEVLKNMYNSQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA++EFVDIAGL+KGAS+GEGLGN+FLSHIREVD+I+QVVRCFED++IVHV+ VDP
Sbjct: 60 RVLPAAIEFVDIAGLIKGASKGEGLGNQFLSHIREVDAIVQVVRCFEDDNIVHVDKTVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL F+D++ +E+R+ K AK +++ AE A L++I L GK A
Sbjct: 120 IRDIETINLELAFADMEVLERRIAK----SAKVAKTDKTIAAEVAILQEIYSTLESGKAA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
R++ D ++D+ I L L+T KP++Y AN++E DL N +V V + +S S
Sbjct: 176 RTLLGEDADKDAFIGSLGLITAKPMLYAANISEEDLIGDVENDYVKRVKDFSSAEGSETF 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A +E EL+EL EE+ +L LG+ +G L+ ++Y LLGL +Y T+G +E +AWT
Sbjct: 236 VICASIEQELSELDDEEKQVFLQDLGLESTGFDRLVAASYKLLGLISYLTAGPQEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G AP AAG IHSDFE+GFIRAE V +DD VA GS AA+EKGLV
Sbjct: 296 ITVGTKAPGAAGKIHSDFERGFIRAEIVNFDDLVACGSYTAAKEKGLV 343
>gi|407478655|ref|YP_006792532.1| GTP-binding protein YchF [Exiguobacterium antarcticum B7]
gi|407062734|gb|AFS71924.1| GTP-binding protein YchF [Exiguobacterium antarcticum B7]
Length = 366
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/374 (52%), Positives = 256/374 (68%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDARLRKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICQVVRCFIDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
P D++ INLEL+ +DL+ +EKR+++++K K++D + E ALE I L D
Sbjct: 120 SPIDDIETINLELILADLELVEKRIQRVQKQVKSRDKNAA----GELEALEIILALLEDE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR LN+ + +K LLTMKP++YVANV E ++AD SN +V V A+ +
Sbjct: 176 KPARLAELNEDQAAIVKHFQLLTMKPMLYVANVGEDEVADADSNENVQLVREFAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E+ EL EER E+L LG+ ESGL LI + Y+ LGL TYFT+GEKE +A
Sbjct: 236 VIIICARIEEEIAELEPEERQEFLVDLGIEESGLDQLIHAAYNTLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GM APQ AGVIHSDFE+GFIRAE VAYDD AAG++A +E+G Y
Sbjct: 296 WTFKKGMKAPQCAGVIHSDFERGFIRAEVVAYDDLAAAGNMATVKEQG-----RYRSEGK 350
Query: 414 SYKYFHWNSYMLRY 427
Y + + R+
Sbjct: 351 EYVFQDGDVVTFRF 364
>gi|421557831|ref|ZP_16003728.1| putative GTP-binding protein [Neisseria meningitidis 80179]
gi|402333550|gb|EJU68852.1| putative GTP-binding protein [Neisseria meningitidis 80179]
Length = 363
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRTRSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE +NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFE---NNPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|15923353|ref|NP_370887.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926064|ref|NP_373597.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus N315]
gi|21282068|ref|NP_645156.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MW2]
gi|49482593|ref|YP_039817.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49485243|ref|YP_042464.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57652623|ref|YP_185326.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus COL]
gi|87160850|ref|YP_493078.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88194145|ref|YP_498935.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148266850|ref|YP_001245793.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus JH9]
gi|150392896|ref|YP_001315571.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus JH1]
gi|151220567|ref|YP_001331389.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156978691|ref|YP_001440950.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus Mu3]
gi|161508634|ref|YP_001574293.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221142671|ref|ZP_03567164.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253316536|ref|ZP_04839749.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. CF-Marseille]
gi|253730726|ref|ZP_04864891.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253735105|ref|ZP_04869270.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|255005158|ref|ZP_05143759.2| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus Mu50-omega]
gi|257424507|ref|ZP_05600936.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427176|ref|ZP_05603578.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429812|ref|ZP_05606199.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257432516|ref|ZP_05608879.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257435418|ref|ZP_05611469.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M876]
gi|257794198|ref|ZP_05643177.1| GTP-binding protein YchF [Staphylococcus aureus A9781]
gi|258413517|ref|ZP_05681792.1| translation-associated GTPase [Staphylococcus aureus A9763]
gi|258421359|ref|ZP_05684286.1| GTP-binding protein YchF [Staphylococcus aureus A9719]
gi|258436940|ref|ZP_05689280.1| translation-associated GTPase [Staphylococcus aureus A9299]
gi|258444343|ref|ZP_05692677.1| translation-associated GTPase [Staphylococcus aureus A8115]
gi|258444880|ref|ZP_05693201.1| translation-associated GTPase [Staphylococcus aureus A6300]
gi|258448085|ref|ZP_05696214.1| translation-associated GTPase [Staphylococcus aureus A6224]
gi|258453044|ref|ZP_05701037.1| translation-associated GTPase [Staphylococcus aureus A5948]
gi|258455918|ref|ZP_05703873.1| translation-associated GTPase [Staphylococcus aureus A5937]
gi|262048925|ref|ZP_06021805.1| hypothetical protein SAD30_0771 [Staphylococcus aureus D30]
gi|262052850|ref|ZP_06025035.1| hypothetical protein SA930_1148 [Staphylococcus aureus 930918-3]
gi|269202011|ref|YP_003281280.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ED98]
gi|282893523|ref|ZP_06301756.1| GTP-binding protein YchF [Staphylococcus aureus A8117]
gi|282902948|ref|ZP_06310841.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C160]
gi|282907346|ref|ZP_06315194.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282907689|ref|ZP_06315531.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282912596|ref|ZP_06320392.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913221|ref|ZP_06321013.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M899]
gi|282915685|ref|ZP_06323456.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus D139]
gi|282921660|ref|ZP_06329378.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C427]
gi|282922336|ref|ZP_06330027.1| GTP-binding protein YchF [Staphylococcus aureus A9765]
gi|282922848|ref|ZP_06330538.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C101]
gi|282927417|ref|ZP_06335035.1| GTP-binding protein YchF [Staphylococcus aureus A10102]
gi|283768091|ref|ZP_06341006.1| ychF translation-associated GTPase [Staphylococcus aureus subsp.
aureus H19]
gi|283959801|ref|ZP_06377242.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284023372|ref|ZP_06377770.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus 132]
gi|293498270|ref|ZP_06666124.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
58-424]
gi|293509211|ref|ZP_06667929.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M809]
gi|293550475|ref|ZP_06673147.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
M1015]
gi|294850011|ref|ZP_06790749.1| GTP-binding protein YchF [Staphylococcus aureus A9754]
gi|295405635|ref|ZP_06815445.1| GTP-binding protein YchF [Staphylococcus aureus A8819]
gi|295426897|ref|ZP_06819536.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275190|ref|ZP_06857697.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MR1]
gi|297209124|ref|ZP_06925523.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245542|ref|ZP_06929410.1| GTP-binding protein YchF [Staphylococcus aureus A8796]
gi|297588891|ref|ZP_06947532.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus MN8]
gi|300911125|ref|ZP_07128574.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH70]
gi|304380328|ref|ZP_07363048.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379013677|ref|YP_005289913.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus VC40]
gi|379020146|ref|YP_005296808.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus subsp. aureus M013]
gi|384546650|ref|YP_005735903.1| hypothetical protein SAOV_0387 [Staphylococcus aureus subsp. aureus
ED133]
gi|384861006|ref|YP_005743726.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384863718|ref|YP_005749077.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384866018|ref|YP_005746214.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH60]
gi|384868921|ref|YP_005751635.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
T0131]
gi|385780647|ref|YP_005756818.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
11819-97]
gi|386728143|ref|YP_006194526.1| hypothetical protein ST398NM01_0443 [Staphylococcus aureus subsp.
aureus 71193]
gi|387142056|ref|YP_005730449.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387149546|ref|YP_005741110.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus 04-02981]
gi|387779533|ref|YP_005754331.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|404477751|ref|YP_006709181.1| ychF, translation-associated GTPase [Staphylococcus aureus
08BA02176]
gi|415683422|ref|ZP_11448655.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|415687110|ref|ZP_11451078.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|415692461|ref|ZP_11454422.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|416842286|ref|ZP_11904932.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus O11]
gi|417650212|ref|ZP_12299986.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21189]
gi|417652045|ref|ZP_12301801.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21172]
gi|417654025|ref|ZP_12303753.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21193]
gi|417795863|ref|ZP_12443081.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21305]
gi|417887508|ref|ZP_12531633.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21195]
gi|417893768|ref|ZP_12537791.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21201]
gi|417897152|ref|ZP_12541091.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21235]
gi|417898597|ref|ZP_12542516.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21259]
gi|417904789|ref|ZP_12548608.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21269]
gi|418279792|ref|ZP_12892970.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21178]
gi|418285229|ref|ZP_12897915.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21209]
gi|418311695|ref|ZP_12923217.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21331]
gi|418313478|ref|ZP_12924966.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21334]
gi|418316317|ref|ZP_12927758.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21340]
gi|418317444|ref|ZP_12928863.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21232]
gi|418320612|ref|ZP_12931966.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
VCU006]
gi|418423555|ref|ZP_12996706.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS1]
gi|418426497|ref|ZP_12999529.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS2]
gi|418429426|ref|ZP_13002363.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418432322|ref|ZP_13005126.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436032|ref|ZP_13007855.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS5]
gi|418438930|ref|ZP_13010656.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS6]
gi|418441916|ref|ZP_13013537.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445039|ref|ZP_13016535.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS8]
gi|418447984|ref|ZP_13019393.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS9]
gi|418450810|ref|ZP_13022155.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS10]
gi|418453824|ref|ZP_13025101.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418456729|ref|ZP_13027947.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418562869|ref|ZP_13127321.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21262]
gi|418566251|ref|ZP_13130633.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21264]
gi|418567803|ref|ZP_13132167.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21272]
gi|418569917|ref|ZP_13134220.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21283]
gi|418573653|ref|ZP_13137839.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21333]
gi|418578288|ref|ZP_13142384.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418581036|ref|ZP_13145121.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597872|ref|ZP_13161390.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21342]
gi|418598099|ref|ZP_13161612.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21343]
gi|418602879|ref|ZP_13166275.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21345]
gi|418639042|ref|ZP_13201312.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-3]
gi|418642401|ref|ZP_13204592.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-24]
gi|418644309|ref|ZP_13206456.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-55]
gi|418647318|ref|ZP_13209383.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-88]
gi|418650014|ref|ZP_13212041.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-91]
gi|418652603|ref|ZP_13214570.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-99]
gi|418658516|ref|ZP_13220235.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871017|ref|ZP_13425407.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-125]
gi|418874406|ref|ZP_13428674.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418877272|ref|ZP_13431512.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880073|ref|ZP_13434295.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883019|ref|ZP_13437221.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418885650|ref|ZP_13439803.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418890884|ref|ZP_13445006.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|418893844|ref|ZP_13447947.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|418896748|ref|ZP_13450823.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418899666|ref|ZP_13453729.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|418902616|ref|ZP_13456659.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418905209|ref|ZP_13459236.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418908085|ref|ZP_13462099.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418911030|ref|ZP_13465015.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG547]
gi|418913615|ref|ZP_13467589.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418916207|ref|ZP_13470171.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418919201|ref|ZP_13473149.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418921993|ref|ZP_13475913.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418926136|ref|ZP_13480036.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|418927659|ref|ZP_13481548.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|418931661|ref|ZP_13485501.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|418933348|ref|ZP_13487174.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|418947694|ref|ZP_13500039.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-157]
gi|418951358|ref|ZP_13503460.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955042|ref|ZP_13506991.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-189]
gi|418979097|ref|ZP_13526895.1| hypothetical protein ST398NM02_0443 [Staphylococcus aureus subsp.
aureus DR10]
gi|418981267|ref|ZP_13528983.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418984860|ref|ZP_13532553.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|418987320|ref|ZP_13534995.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|418990278|ref|ZP_13537941.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|419774694|ref|ZP_14300652.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
CO-23]
gi|419784311|ref|ZP_14310086.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-M]
gi|421149158|ref|ZP_15608817.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|422743786|ref|ZP_16797768.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422747379|ref|ZP_16801296.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424777372|ref|ZP_18204337.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus CM05]
gi|424784201|ref|ZP_18211017.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus CN79]
gi|440706490|ref|ZP_20887223.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21282]
gi|440736381|ref|ZP_20915982.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443635476|ref|ZP_21119605.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21236]
gi|443638363|ref|ZP_21122409.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21196]
gi|448740125|ref|ZP_21722110.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/314250]
gi|13700277|dbj|BAB41575.1| SA0351 [Staphylococcus aureus subsp. aureus N315]
gi|14246131|dbj|BAB56525.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21203504|dbj|BAB94204.1| MW0339 [Staphylococcus aureus subsp. aureus MW2]
gi|49240722|emb|CAG39383.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49243686|emb|CAG42110.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286809|gb|AAW38903.1| conserved hypothetical protein TIGR00092 [Staphylococcus aureus
subsp. aureus COL]
gi|87126824|gb|ABD21338.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201703|gb|ABD29513.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147739919|gb|ABQ48217.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus JH9]
gi|149945348|gb|ABR51284.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus JH1]
gi|150373367|dbj|BAF66627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156720826|dbj|BAF77243.1| hypothetical protein SAHV_0360 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160367443|gb|ABX28414.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253725570|gb|EES94299.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253726905|gb|EES95634.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|257273525|gb|EEV05627.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276807|gb|EEV08258.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
65-1322]
gi|257280293|gb|EEV10880.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257283395|gb|EEV13527.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257286014|gb|EEV16130.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M876]
gi|257788170|gb|EEV26510.1| GTP-binding protein YchF [Staphylococcus aureus A9781]
gi|257839764|gb|EEV64233.1| translation-associated GTPase [Staphylococcus aureus A9763]
gi|257842783|gb|EEV67205.1| GTP-binding protein YchF [Staphylococcus aureus A9719]
gi|257848731|gb|EEV72718.1| translation-associated GTPase [Staphylococcus aureus A9299]
gi|257850602|gb|EEV74550.1| translation-associated GTPase [Staphylococcus aureus A8115]
gi|257856198|gb|EEV79112.1| translation-associated GTPase [Staphylococcus aureus A6300]
gi|257858600|gb|EEV81474.1| translation-associated GTPase [Staphylococcus aureus A6224]
gi|257859254|gb|EEV82109.1| translation-associated GTPase [Staphylococcus aureus A5948]
gi|257862130|gb|EEV84903.1| translation-associated GTPase [Staphylococcus aureus A5937]
gi|259159251|gb|EEW44310.1| hypothetical protein SA930_1148 [Staphylococcus aureus 930918-3]
gi|259162997|gb|EEW47559.1| hypothetical protein SAD30_0771 [Staphylococcus aureus D30]
gi|262074301|gb|ACY10274.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ED98]
gi|269939943|emb|CBI48315.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282315069|gb|EFB45455.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C101]
gi|282316075|gb|EFB46459.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C427]
gi|282320501|gb|EFB50840.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus D139]
gi|282323321|gb|EFB53640.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M899]
gi|282324292|gb|EFB54608.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328594|gb|EFB58865.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330245|gb|EFB59766.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590741|gb|EFB95817.1| GTP-binding protein YchF [Staphylococcus aureus A10102]
gi|282593462|gb|EFB98457.1| GTP-binding protein YchF [Staphylococcus aureus A9765]
gi|282597407|gb|EFC02366.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C160]
gi|282764209|gb|EFC04336.1| GTP-binding protein YchF [Staphylococcus aureus A8117]
gi|283461970|gb|EFC09054.1| ychF translation-associated GTPase [Staphylococcus aureus subsp.
aureus H19]
gi|283789393|gb|EFC28220.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285816085|gb|ADC36572.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus 04-02981]
gi|290919522|gb|EFD96598.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
M1015]
gi|291097201|gb|EFE27459.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
58-424]
gi|291467963|gb|EFF10471.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M809]
gi|294823145|gb|EFG39576.1| GTP-binding protein YchF [Staphylococcus aureus A9754]
gi|294969710|gb|EFG45729.1| GTP-binding protein YchF [Staphylococcus aureus A8819]
gi|295129349|gb|EFG58976.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296886057|gb|EFH24991.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177528|gb|EFH36779.1| GTP-binding protein YchF [Staphylococcus aureus A8796]
gi|297577402|gb|EFH96115.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus MN8]
gi|298693701|gb|ADI96923.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300887304|gb|EFK82500.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH70]
gi|302750235|gb|ADL64412.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304341309|gb|EFM07228.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312436523|gb|ADQ75594.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH60]
gi|312828885|emb|CBX33727.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315130010|gb|EFT85999.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194822|gb|EFU25211.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|315198044|gb|EFU28376.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320139329|gb|EFW31208.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142879|gb|EFW34675.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323438823|gb|EGA96561.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus O11]
gi|329313056|gb|AEB87469.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
T0131]
gi|329724230|gb|EGG60743.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21189]
gi|329725875|gb|EGG62354.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21172]
gi|329732584|gb|EGG68934.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21193]
gi|334270794|gb|EGL89194.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21305]
gi|341839899|gb|EGS81441.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21235]
gi|341845810|gb|EGS87010.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21269]
gi|341848119|gb|EGS89286.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21259]
gi|341853275|gb|EGS94156.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21201]
gi|341857665|gb|EGS98476.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21195]
gi|344176635|emb|CCC87094.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359829455|gb|AEV77433.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus subsp. aureus M013]
gi|364521636|gb|AEW64386.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
11819-97]
gi|365170052|gb|EHM61137.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21178]
gi|365171016|gb|EHM61897.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21209]
gi|365226402|gb|EHM67618.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
VCU006]
gi|365233806|gb|EHM74749.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21331]
gi|365235830|gb|EHM76740.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21334]
gi|365241566|gb|EHM82311.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21340]
gi|365245321|gb|EHM85963.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21232]
gi|371970975|gb|EHO88386.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21264]
gi|371972937|gb|EHO90304.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21262]
gi|371981323|gb|EHO98505.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21333]
gi|371982448|gb|EHO99608.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21272]
gi|371985222|gb|EHP02306.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21283]
gi|374362374|gb|AEZ36479.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus VC40]
gi|374393282|gb|EHQ64596.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21342]
gi|374394406|gb|EHQ65692.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21345]
gi|374400162|gb|EHQ71284.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21343]
gi|375016893|gb|EHS10527.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-24]
gi|375019668|gb|EHS13220.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-3]
gi|375021958|gb|EHS15453.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-99]
gi|375026085|gb|EHS19475.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-55]
gi|375029234|gb|EHS22564.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-91]
gi|375030177|gb|EHS23500.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-88]
gi|375038242|gb|EHS31233.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-111]
gi|375369360|gb|EHS73241.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-125]
gi|375371715|gb|EHS75480.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-189]
gi|375373230|gb|EHS76921.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-160]
gi|375374692|gb|EHS78318.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-157]
gi|377697967|gb|EHT22320.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377698186|gb|EHT22536.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377700361|gb|EHT24700.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|377706885|gb|EHT31180.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377708538|gb|EHT32827.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377708939|gb|EHT33219.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377712831|gb|EHT37047.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714251|gb|EHT38454.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|377717245|gb|EHT41422.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377720735|gb|EHT44890.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|377724278|gb|EHT48395.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377726897|gb|EHT51007.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377727736|gb|EHT51839.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377733831|gb|EHT57872.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377734049|gb|EHT58089.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377736533|gb|EHT60549.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377740215|gb|EHT64214.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377743513|gb|EHT67494.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|377743629|gb|EHT67608.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377752436|gb|EHT76359.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377757308|gb|EHT81197.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG149]
gi|377759658|gb|EHT83539.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377762970|gb|EHT86831.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377764509|gb|EHT88359.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377768253|gb|EHT92038.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|377772354|gb|EHT96104.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|377773522|gb|EHT97268.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|379993035|gb|EIA14483.1| hypothetical protein ST398NM02_0443 [Staphylococcus aureus subsp.
aureus DR10]
gi|383364515|gb|EID41829.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-M]
gi|383971503|gb|EID87577.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
CO-23]
gi|384229436|gb|AFH68683.1| hypothetical protein ST398NM01_0443 [Staphylococcus aureus subsp.
aureus 71193]
gi|387721536|gb|EIK09398.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387721622|gb|EIK09481.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS2]
gi|387722857|gb|EIK10637.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS1]
gi|387728211|gb|EIK15708.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS4]
gi|387730114|gb|EIK17525.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS5]
gi|387732084|gb|EIK19334.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS6]
gi|387738881|gb|EIK25897.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS8]
gi|387739893|gb|EIK26874.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS9]
gi|387740258|gb|EIK27218.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS7]
gi|387747558|gb|EIK34265.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS10]
gi|387748569|gb|EIK35239.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387749556|gb|EIK36180.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11b]
gi|394331260|gb|EJE57348.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|402346451|gb|EJU81538.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus CM05]
gi|404439240|gb|AFR72433.1| ychF, translation-associated GTPase [Staphylococcus aureus
08BA02176]
gi|408422850|emb|CCJ10261.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408424838|emb|CCJ12225.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408426827|emb|CCJ14190.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408428815|emb|CCJ25980.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408430803|emb|CCJ18118.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408432797|emb|CCJ20082.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408434786|emb|CCJ22046.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408436771|emb|CCJ24014.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|421957567|gb|EKU09886.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus CN79]
gi|436430148|gb|ELP27512.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436507027|gb|ELP42762.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21282]
gi|443409493|gb|ELS67988.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21236]
gi|443409642|gb|ELS68136.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21196]
gi|445549183|gb|ELY17424.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/314250]
Length = 365
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|448743595|ref|ZP_21725502.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/Y21]
gi|445562880|gb|ELY19044.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/Y21]
Length = 365
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVKYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|260655680|ref|ZP_05861153.1| GTP-binding protein YchF [Jonquetella anthropi E3_33 E1]
gi|424845427|ref|ZP_18270038.1| GTP-binding protein YchF [Jonquetella anthropi DSM 22815]
gi|260629597|gb|EEX47791.1| GTP-binding protein YchF [Jonquetella anthropi E3_33 E1]
gi|363986865|gb|EHM13695.1| GTP-binding protein YchF [Jonquetella anthropi DSM 22815]
Length = 362
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 257/348 (73%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKST+FNA+ + G A+A+N+PFCTIEPNVG+VAVPD RL VL+ + +S+
Sbjct: 1 MKLGIVGLPNVGKSTIFNAITQAG-AEASNYPFCTIEPNVGMVAVPDERLDVLARMYESK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA+V+F DIAGLVKGAS+GEGLGN+FLSHIREV++I VVRCFED+++ HV+G VDP
Sbjct: 60 KITPATVQFFDIAGLVKGASKGEGLGNQFLSHIREVNAICHVVRCFEDSNVTHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ I LEL+ SDL+ +E+ + K +K KA S + E E++++ L G+
Sbjct: 120 MRDIETIELELILSDLEMVERAVAKTEKLAKADRSLAPTLE-----LFEQVKKTLEAGQL 174
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
R+++L D ++ +K + LL+ KP++YVANV+E DLA G + V A+ +G V
Sbjct: 175 IRTLSLTDEQKLILKGMNLLSDKPMLYVANVSEDDLAG-GLGEYAAAVQRFAASQGAGFV 233
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
IS +VE++L EL EER E+LA LG+ +GL LI + YSLLGL ++ T+GEKET+AWT
Sbjct: 234 AISGKVESDLAELEPEERKEFLADLGLESAGLDRLISAGYSLLGLMSFLTAGEKETRAWT 293
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I G APQAAGVIH+DFE+GFIRA+ V+Y+D VA GS+A AR +GL+
Sbjct: 294 IPVGTKAPQAAGVIHTDFERGFIRAQIVSYNDLVACGSVAEARARGLL 341
>gi|289423068|ref|ZP_06424883.1| GTP-binding protein YchF [Peptostreptococcus anaerobius 653-L]
gi|289156399|gb|EFD05049.1| GTP-binding protein YchF [Peptostreptococcus anaerobius 653-L]
Length = 365
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 261/349 (74%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+VL L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDQRLNVLKDLYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+++VHV+G ++
Sbjct: 60 KIVQTAIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSNVVHVDGSINS 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K K D + E L+ +++ L +GK
Sbjct: 120 LRDIETINLELIFSDMEILDRRITKTTKALKADKTLQ----GELDILKNLKETLEEGKSI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSGRV 295
R++ L++ E + L LL+ KP+IYVANV+E DLA+ G++ V V A+ S V
Sbjct: 176 RTMDLSEDEWKFVNGLDLLSSKPVIYVANVSEDDLANDGADSQMVAAVREFAATENSEVV 235
Query: 296 TISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+EAE++EL + EE++E+L +LG+ +SGL LI+S+Y LLGL ++ T+G +E +AW
Sbjct: 236 VICAQIEAEISELETDEEKLEFLETLGLEQSGLDKLIKSSYHLLGLISFLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TIR G AP+A G IHSD E+GFI+AET+AY+D + G++AAA+EKGLV
Sbjct: 296 TIRNGAKAPEAGGKIHSDIERGFIKAETIAYEDLIEHGTMAAAKEKGLV 344
>gi|229917469|ref|YP_002886115.1| GTP-binding protein YchF [Exiguobacterium sp. AT1b]
gi|229468898|gb|ACQ70670.1| GTP-binding protein YchF [Exiguobacterium sp. AT1b]
Length = 366
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 253/348 (72%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDARLDRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I QVVRCFED +I HV G+V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICQVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
P D+ INLEL+ +DL+Q++KR+ +++K KAKD + E ALE ++ L
Sbjct: 120 SPIDDITTINLELILADLEQVDKRIARVQKMVKAKDKGAV----QELEALEIVRDVLESE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR L++ + +K LLTMKP++YVANV+E ++AD SN V V + A+ S
Sbjct: 176 RPARVAELSEDQLAIVKHFQLLTMKPMLYVANVSEDEVADADSNEFVQAVRDHAATEGSK 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E++EL EER+E+L LG+ ESGL LIR+ YS LGL TYFT+GEKE +A
Sbjct: 236 VIVICARIEEEISELEPEERLEFLQDLGIEESGLDQLIRAAYSTLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + GM APQ AGVIHSDFE+GFIRAE V+Y+D AAG++ +E+G
Sbjct: 296 WTFKQGMKAPQCAGVIHSDFERGFIRAEVVSYEDLSAAGNMTTVKEQG 343
>gi|153855364|ref|ZP_01996513.1| hypothetical protein DORLON_02527 [Dorea longicatena DSM 13814]
gi|149752184|gb|EDM62115.1| GTP-binding protein YchF [Dorea longicatena DSM 13814]
Length = 366
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 258/350 (73%), Gaps = 8/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+++IVHV+G ++P
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENSNIVHVDGSINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K+ K A++ +S K E L K++ L DGK A
Sbjct: 120 LRDIETINLELIFSDLEILERRISKVSK-VARNDKSAAK---ELGLLNKVKAHLEDGKLA 175
Query: 237 RSVTLNDFERDS--IKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSG 293
++ D E + ++ LLT KP+IY ANV+E DLAD +N V V A QS
Sbjct: 176 KTFEEVDDEEEQAWLESYNLLTYKPVIYAANVSEDDLADDAANNEGVQAVREYAKGEQSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ A++EAE++EL +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +A
Sbjct: 236 VFVVCAEIEAEISELDDDEKKMFLEDLGLKESGLEKLIKASYKLLGLISYLTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G APQAAG IHSDFE+GFIRAE V+YDD +A GS AA+EKGL+
Sbjct: 296 WTITEGTKAPQAAGKIHSDFERGFIRAEVVSYDDLIACGSHTAAKEKGLI 345
>gi|419841468|ref|ZP_14364837.1| GTP-binding protein YchF [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386904994|gb|EIJ69775.1| GTP-binding protein YchF [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 364
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/373 (51%), Positives = 261/373 (69%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ + + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLQALAEIIQPQRIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA+QGEGLGNKFLS+IR +I QVVRCFED ++VHV+G VDP D
Sbjct: 65 AATVEFVDIAGLVKGAAQGEGLGNKFLSNIRSTAAICQVVRCFEDENVVHVDGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+DL+ ++K +EK K K +Q+K+KE E + L K + L + ++
Sbjct: 125 IEVINTELIFADLETVDKAIEKHK----KLAQNKIKESVELMSVLPKAKAHLESFQLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ ++ E+ +K LLT+KP+I+ ANVAE DLA+ N +V +V A + S V +S
Sbjct: 181 FSFSEAEKALLKNYQLLTLKPMIFAANVAEDDLAE--GNSYVEKVKEYAEKMGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E R E+L SLGV E+GL LIR+ + LLGL+TYFT+G KE +AWTI
Sbjct: 239 AKVEAELQEMDEESRQEFLESLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIHI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+Y DF+ A+E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYQDFIQYKGWKGAQEVGVL-------RLEGKEYT 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|420154842|ref|ZP_14661716.1| GTP-binding protein YchF [Clostridium sp. MSTE9]
gi|394760125|gb|EJF42749.1| GTP-binding protein YchF [Clostridium sp. MSTE9]
Length = 367
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 252/348 (72%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N AQ+AN+PFCTIEPNVG+VAVPD RL L+ + +
Sbjct: 4 MKLGIVGLPNVGKSTLFNAIT-NAGAQSANYPFCTIEPNVGVVAVPDKRLDKLAEMYHPE 62
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ VVRCFED+DI+HV+G VDP
Sbjct: 63 KYTPATIEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVVRCFEDDDIIHVDGSVDP 122
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
DV+ INLEL+ SD++ +++R++K +K D K E E+++ L G A
Sbjct: 123 ARDVETINLELILSDMEVLDRRLDKTRKMLKADK----KYQTECEFFERVRAELDAGHTA 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRV 295
RSV + E + + + LLT K +IY AN++++D +NP+ + LA +G +
Sbjct: 179 RSVECTEEEAELLATVSLLTNKLVIYAANMSDADFKGGVENNPYFAVIEKLARQENAGVL 238
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A+VEAE++ + EE+ +L +G+SESGL LIR Y+LLGL +Y T+G +E +AWT
Sbjct: 239 PICAEVEAEISGMEPEEKQMFLEDMGLSESGLDRLIRECYTLLGLISYLTAGPQEVRAWT 298
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IH+DFE+GFIRAE VAYDD +A G++AAA+EKGLV
Sbjct: 299 IKEGTKAPQAAGKIHTDFERGFIRAEVVAYDDLMACGTMAAAKEKGLV 346
>gi|255282557|ref|ZP_05347112.1| GTP-binding protein YchF [Bryantella formatexigens DSM 14469]
gi|255266850|gb|EET60055.1| GTP-binding protein YchF [Marvinbryantia formatexigens DSM 14469]
Length = 365
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 259/350 (74%), Gaps = 7/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD RL L+ L S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERLQKLAALYNSV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D +++HV+G VDP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K+ +G A++ +++ K E L ++++ L G+ A
Sbjct: 120 VRDIETINLELIFSDIEILERRIAKVSRG-ARNDKAQAK---ELELLNRLKEHLEQGRLA 175
Query: 237 RSVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+ +D E++ + LLT KP+I+ ANVAE DLAD G SN +V EV A + S
Sbjct: 176 ITFKTDDEDEQEWLSGYNLLTGKPVIFAANVAEDDLADDGASNKYVQEVREFAKEQGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+E E+ EL +E+ +L LG+++SGL LI+++Y +LGL +Y TSGE ET+AW
Sbjct: 236 FVICAQIEQEIAELEEDEKKMFLEDLGIAQSGLEKLIQASYHILGLISYLTSGEPETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
TI+ G APQAAG IHSDFE+GFIRAE V Y D + GS+AAA+EKGLV
Sbjct: 296 TIKKGTKAPQAAGKIHSDFERGFIRAEVVNYQDLLDCGSIAAAKEKGLVG 345
>gi|388457342|ref|ZP_10139637.1| GTP-binding protein YchF [Fluoribacter dumoffii Tex-KL]
Length = 363
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 251/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDPRLDALSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +PA+++FVDIAG+VKGAS+GEGLGN+FL++IRE D+I VVRCFE+ D+VHV GKV
Sbjct: 60 PQQVLPATMQFVDIAGIVKGASKGEGLGNQFLANIRETDAIAHVVRCFENTDVVHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
P SD++VIN EL +D++ +EK + LK G K+S+S KE E LEKI+ L +G
Sbjct: 120 HPLSDIEVINTELALADMETLEKAI--LKAG--KNSRSGNKEAIFEMKTLEKIKAHLDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ L+ E ++L LLT KP++Y+ANV + + NP +++V NLA+ ++
Sbjct: 176 YPVRTLELSAEEEPVARRLFLLTAKPVLYIANVDDEGYEN---NPLLDQVRNLAAQEKAS 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A EAEL EL +R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVALCAATEAELVELDEADRQEFMEDLGLSEPGLHRVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAGVIHSDFEKGFIRAE +AYD F+A A+E G
Sbjct: 293 WTIPKGATAPQAAGVIHSDFEKGFIRAEVIAYDAFIACKGEQGAKEAG 340
>gi|126727677|ref|ZP_01743509.1| translation-associated GTPase [Rhodobacterales bacterium HTCC2150]
gi|126703093|gb|EBA02194.1| translation-associated GTPase [Rhodobacterales bacterium HTCC2150]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 244/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVG+PNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD R+ VL+ ++
Sbjct: 1 MGFKTGIVGMPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDARIDVLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +P + FVDIAGLVKGASQGEGLGN+FL++IRE D+I V+RCFED+D+ HV+G+V
Sbjct: 61 SKSIIPTRMTFVDIAGLVKGASQGEGLGNQFLANIRECDTIAHVLRCFEDDDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I EL+ +DL+ IEKR+ L +K + D ++ L+ + L + + AL DG
Sbjct: 121 DPVADAETIETELMLADLESIEKRLTNLVRKTRGGDKEALLQVE----LLTRAKVALEDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V + + E + + L LLT KPI+YV NV ES+ D N H V +A +
Sbjct: 177 QPARNVEIAEDEAKAWEMLQLLTTKPILYVCNVEESNAGD--GNAHSARVAEMAKAQGAA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA +E E+++L E+ +L+ +G+ E GL LIR+ Y LLGL TYFT G KE +A
Sbjct: 235 SVVISAAIEEEISQLDDEDAEMFLSEIGLEEPGLDRLIRAGYELLGLATYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAGVIH DFEKGFIRAET+AYDDFVA ++E G
Sbjct: 295 WTIHQGWTAPQAAGVIHGDFEKGFIRAETIAYDDFVAFNGEQGSKEAG 342
>gi|421543085|ref|ZP_15989184.1| putative GTP-binding protein [Neisseria meningitidis NM255]
gi|402315755|gb|EJU51313.1| putative GTP-binding protein [Neisseria meningitidis NM255]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 250/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|385324797|ref|YP_005879236.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis 8013]
gi|385855857|ref|YP_005902370.1| GTP-binding protein EngD [Neisseria meningitidis M01-240355]
gi|416184788|ref|ZP_11613105.1| GTP-binding protein EngD [Neisseria meningitidis M13399]
gi|421555558|ref|ZP_16001488.1| putative GTP-binding protein [Neisseria meningitidis 98008]
gi|433469969|ref|ZP_20427377.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
98080]
gi|433522843|ref|ZP_20479522.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
61103]
gi|254671615|emb|CBA09307.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|261393184|emb|CAX50802.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis 8013]
gi|325133488|gb|EGC56151.1| GTP-binding protein EngD [Neisseria meningitidis M13399]
gi|325204798|gb|ADZ00252.1| GTP-binding protein EngD [Neisseria meningitidis M01-240355]
gi|402329795|gb|EJU65149.1| putative GTP-binding protein [Neisseria meningitidis 98008]
gi|432201562|gb|ELK57642.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
98080]
gi|432257358|gb|ELL12661.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
61103]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE +NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFE---NNPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|340749834|ref|ZP_08686682.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium
mortiferum ATCC 9817]
gi|229419477|gb|EEO34524.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium
mortiferum ATCC 9817]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/376 (50%), Positives = 265/376 (70%), Gaps = 19/376 (5%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL LS + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDSRLDELSKIINPQRVV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA++GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 QATVEFVDIAGLVKGAAKGEGLGNKFLSNIRTTAAICQVVRCFEDDNVIHVSGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
++VIN EL+F+D++ ++K +EK KK K K+S + + LEK + L + +
Sbjct: 125 IEVINTELIFADMETVDKAIEKHKKLAMNKNKESMALM------PVLEKCKTHLENFQLL 178
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
+++++ND E + ++ LLT+KP+I+ ANV+E DLA N +V +V A +L S V
Sbjct: 179 KTLSMNDEELELVRTYQLLTLKPMIFAANVSEDDLAT--GNEYVEKVREYAKELGSEVVI 236
Query: 297 ISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SA+VEAEL E+ EE + EYL +LGV E+GL LIR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 237 VSAKVEAELQEMDDEESKKEYLEALGVEEAGLNRLIRAGYKLLGLQTYFTAGVKEVRAWT 296
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASY 415
I+ G TAP+AAG IH+DFEKGFIRA+ V++DDF+ A+E G++ L
Sbjct: 297 IKIGDTAPKAAGEIHTDFEKGFIRAKVVSFDDFIKYSGWKGAQEAGVL-------RLEGK 349
Query: 416 KYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 350 EYIVQDGDLMEFLFNV 365
>gi|333398341|ref|ZP_08480154.1| GTP-binding protein YchF [Leuconostoc gelidum KCTC 3527]
gi|406600534|ref|YP_006745880.1| GTP-binding protein YchF [Leuconostoc gelidum JB7]
gi|406372069|gb|AFS40994.1| GTP-binding protein YchF [Leuconostoc gelidum JB7]
Length = 366
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/348 (52%), Positives = 248/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIIHVVRAFDGDDIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL+ +DL+ ++KR K+ + + D +K AE L+KI+ L G
Sbjct: 120 DPLDDIDTINTELILADLETVDKRYAKVVRAARGSDKLAK----AELLVLDKIKPTLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ RS+ D E+ +K L LLT KP++YVAN+AE D+ADP S+ + N++ A+ ++
Sbjct: 176 QSVRSINFTDEEQKVVKGLFLLTSKPVLYVANLAEDDMADPESSRYFNDIKAFAATEKAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E ++ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEDIAQLAEEDKAEFLEMAGVAEPGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT ++GM APQ AGVIHSDFE+GFIRAET+A+DD GS+ A +E G
Sbjct: 296 WTFKSGMKAPQTAGVIHSDFERGFIRAETIAFDDLNTFGSVKAVKEAG 343
>gi|59800527|ref|YP_207239.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae FA 1090]
gi|194097672|ref|YP_002000712.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae NCCP11945]
gi|240013377|ref|ZP_04720290.1| translation-associated GTPase [Neisseria gonorrhoeae DGI18]
gi|240015820|ref|ZP_04722360.1| translation-associated GTPase [Neisseria gonorrhoeae FA6140]
gi|240120449|ref|ZP_04733411.1| translation-associated GTPase [Neisseria gonorrhoeae PID24-1]
gi|254492971|ref|ZP_05106142.1| translation-associated GTPase [Neisseria gonorrhoeae 1291]
gi|268594048|ref|ZP_06128215.1| translation-associated GTPase [Neisseria gonorrhoeae 35/02]
gi|268596097|ref|ZP_06130264.1| translation-associated GTPase [Neisseria gonorrhoeae FA19]
gi|268598223|ref|ZP_06132390.1| translation-associated GTPase [Neisseria gonorrhoeae MS11]
gi|268600569|ref|ZP_06134736.1| translation-associated GTPase [Neisseria gonorrhoeae PID18]
gi|268602887|ref|ZP_06137054.1| translation-associated GTPase [Neisseria gonorrhoeae PID1]
gi|268681351|ref|ZP_06148213.1| translation-associated GTPase [Neisseria gonorrhoeae PID332]
gi|268683521|ref|ZP_06150383.1| translation-associated GTPase [Neisseria gonorrhoeae SK-92-679]
gi|291044621|ref|ZP_06570330.1| translation-associated GTPase [Neisseria gonorrhoeae DGI2]
gi|293397740|ref|ZP_06641946.1| GTP-binding protein YchF [Neisseria gonorrhoeae F62]
gi|385334939|ref|YP_005888886.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae TCDC-NG08107]
gi|59717422|gb|AAW88827.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090]
gi|193932962|gb|ACF28786.1| putative GTP-binding protein [Neisseria gonorrhoeae NCCP11945]
gi|226512011|gb|EEH61356.1| translation-associated GTPase [Neisseria gonorrhoeae 1291]
gi|268547437|gb|EEZ42855.1| translation-associated GTPase [Neisseria gonorrhoeae 35/02]
gi|268549885|gb|EEZ44904.1| translation-associated GTPase [Neisseria gonorrhoeae FA19]
gi|268582354|gb|EEZ47030.1| translation-associated GTPase [Neisseria gonorrhoeae MS11]
gi|268584700|gb|EEZ49376.1| translation-associated GTPase [Neisseria gonorrhoeae PID18]
gi|268587018|gb|EEZ51694.1| translation-associated GTPase [Neisseria gonorrhoeae PID1]
gi|268621635|gb|EEZ54035.1| translation-associated GTPase [Neisseria gonorrhoeae PID332]
gi|268623805|gb|EEZ56205.1| translation-associated GTPase [Neisseria gonorrhoeae SK-92-679]
gi|291011515|gb|EFE03511.1| translation-associated GTPase [Neisseria gonorrhoeae DGI2]
gi|291611686|gb|EFF40755.1| GTP-binding protein YchF [Neisseria gonorrhoeae F62]
gi|317163482|gb|ADV07023.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNRFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERALLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|300173930|ref|YP_003773096.1| GTP-binding protein YchF [Leuconostoc gasicomitatum LMG 18811]
gi|333447802|ref|ZP_08482744.1| GTP-binding protein YchF [Leuconostoc inhae KCTC 3774]
gi|299888309|emb|CBL92277.1| GTP-binding protein YchF [Leuconostoc gasicomitatum LMG 18811]
Length = 366
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/348 (52%), Positives = 248/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIIHVVRAFDGDDIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL+ +DL+ ++KR K+ + + D +K AE L+KI+ L G
Sbjct: 120 DPLDDIDTINTELILADLETVDKRYAKVVRAARGSDKLAK----AELLVLDKIKPTLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ RS++ D E +K L LLT KP++YVAN+AE D+ADP S+ + N++ A+ ++
Sbjct: 176 QSVRSISFTDEEEKLVKGLFLLTSKPVLYVANLAEDDMADPESSRYFNDIKAFAATEKAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E ++ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASAEEDIAQLAEEDKAEFLEMAGVTEPGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT ++GM APQ AGVIHSDFE+GFIRAET+A+DD GS+ A +E G
Sbjct: 296 WTFKSGMKAPQTAGVIHSDFERGFIRAETIAFDDLNTFGSVKAVKEAG 343
>gi|359411172|ref|ZP_09203637.1| GTP-binding protein YchF [Clostridium sp. DL-VIII]
gi|357170056|gb|EHI98230.1| GTP-binding protein YchF [Clostridium sp. DL-VIII]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/347 (53%), Positives = 250/347 (72%), Gaps = 7/347 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEEMYSTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+ +E+RMEK +K ++ D +K E +E+I+ L KP
Sbjct: 120 IRDIETINLELIFSDLEVLERRMEKSIKLARSGDKTAKF----EYGVMERIKAQLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
AR++ + D E IK L L+T KP++Y N++E D+ + N +V +V A+D S
Sbjct: 176 ARTLEVTDEEEAFIKGLFLITSKPVLYACNISEDDVMEGNFDNDYVKKVKEYAADENSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ +SA++E EL+ L EE+ E L G+ ESGL LI ++Y LLGL ++ T+G +E +AW
Sbjct: 236 MVVSAKIEEELSGLEDEEKAEMLGEYGLKESGLDKLIEASYKLLGLMSFLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI+ G APQAAG IHSD E+GFIRAE V+YDD V GS A+A+EKG
Sbjct: 296 TIKRGTKAPQAAGKIHSDIERGFIRAEIVSYDDLVECGSEASAKEKG 342
>gi|336316601|ref|ZP_08571494.1| GTP-binding protein YchF [Rheinheimera sp. A13L]
gi|335879105|gb|EGM77011.1| GTP-binding protein YchF [Rheinheimera sp. A13L]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 247/348 (70%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPD RL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDLRLQQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGNKFL++IRE D+I VVRCF+D +I+HV GK+
Sbjct: 60 PQRILPTTMEFVDIAGLVKGASKGEGLGNKFLANIRETDAIGHVVRCFDDENIIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN+ELV SD+D +K + ++ KK KA D +K AE LEK+++ L G
Sbjct: 120 DPADDIDTINMELVLSDMDSADKAIFRVSKKAKAGDKDAK----AEMEVLEKVKKHLESG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
R + L+D E+ + + LT+KP +Y+ANV E + NPH++ V +A+ +
Sbjct: 176 LTLRQLDLSDDEKALVSYMNFLTIKPTMYIANVLEDGFEN---NPHLDVVKAIAAKEGAI 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V+I A +E+E+ EL EE+ E+L S+G+ E GL +IR YSLL L TYFT+G KE +A
Sbjct: 233 VVSICAAIESEIAELEDEEKAEFLESMGLEEPGLNRVIRGGYSLLNLHTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAGVIH+DFE+GFIRA+ V+YDDF+A A A+E G
Sbjct: 293 WTIPVGATAPQAAGVIHTDFERGFIRAQVVSYDDFIACKGEAGAKEAG 340
>gi|241764112|ref|ZP_04762149.1| GTP-binding protein YchF [Acidovorax delafieldii 2AN]
gi|241366576|gb|EER61064.1| GTP-binding protein YchF [Acidovorax delafieldii 2AN]
Length = 364
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 249/349 (71%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLKQLAEIIS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++VI EL +D+ ++K + + K AK K DA K A L +IQ AL +
Sbjct: 120 DPIADIEVIQTELCLADMGTVDKALNRYTKA-AKSGNDK---DAAKLVALLTRIQAALNE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + + A+ +
Sbjct: 176 GKPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKDYAASQNA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ E+ E+R +LA +G SE GL LIR + LLGL+TYFT+G KE +
Sbjct: 233 PVVAICAKMEAEMAEMSDEDRDMFLAEMGQSEPGLARLIRGAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH DFE+GFIRA+T+++DDF+A A++ G
Sbjct: 293 AWTIHIGDTAPQAAGVIHGDFERGFIRAQTISFDDFIAYKGEQGAKDAG 341
>gi|418325769|ref|ZP_12936974.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU071]
gi|365227793|gb|EHM68981.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU071]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 259/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM----ELRILTQIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 176 KPVRSIDFNDDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|242243296|ref|ZP_04797741.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|416127780|ref|ZP_11597097.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis FRI909]
gi|418329498|ref|ZP_12940559.1| GTP-binding protein YchF [Staphylococcus epidermidis 14.1.R1.SE]
gi|418615066|ref|ZP_13178018.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU118]
gi|418631213|ref|ZP_13193682.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU128]
gi|420176509|ref|ZP_14682929.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM061]
gi|420178351|ref|ZP_14684683.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM057]
gi|420180842|ref|ZP_14687051.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM053]
gi|420192499|ref|ZP_14698358.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM023]
gi|242233245|gb|EES35557.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|319399806|gb|EFV88054.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis FRI909]
gi|365230294|gb|EHM71403.1| GTP-binding protein YchF [Staphylococcus epidermidis 14.1.R1.SE]
gi|374818496|gb|EHR82653.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU118]
gi|374835599|gb|EHR99198.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU128]
gi|394241053|gb|EJD86474.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM061]
gi|394246541|gb|EJD91797.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM057]
gi|394248321|gb|EJD93559.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM053]
gi|394261229|gb|EJE06029.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM023]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 259/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM----ELRILTQIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQHGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|209886300|ref|YP_002290157.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM5]
gi|337740156|ref|YP_004631884.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM5]
gi|386029173|ref|YP_005949948.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM4]
gi|209874496|gb|ACI94292.1| GTP-binding protein YchF [Oligotropha carboxidovorans OM5]
gi|336094241|gb|AEI02067.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM4]
gi|336097820|gb|AEI05643.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM5]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 240/348 (68%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLAEVAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD++ VVRCFED+DI HV G++
Sbjct: 61 SAQIIPTQLTFVDIAGLVKGASKGEGLGNQFLATIREVDAVAHVVRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P D++ I EL+ +DL+ +EKR++ L KK K D SK + D +E+ + L DG
Sbjct: 121 APLEDIETIETELMLADLESLEKRVDNLSKKAKGGDKDSKEQLD----LVERALKLLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + E + + L LLT KP++YV NV E AD N V A +
Sbjct: 177 KPARFLERKAEEERAFRMLGLLTSKPVLYVCNVEEGAAAD--GNAFSKAVFEHAKKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVAISAKIESEIATLSREERVDFLETLGLEEAGLDRLIRAGYDLLHLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AYDD+V G A AR+ G
Sbjct: 295 WTITKGTKAPAAAGVIHTDFEKGFIRAETIAYDDYVTLGGEAGARDAG 342
>gi|225574506|ref|ZP_03783116.1| hypothetical protein RUMHYD_02583 [Blautia hydrogenotrophica DSM
10507]
gi|225038293|gb|EEG48539.1| GTP-binding protein YchF [Blautia hydrogenotrophica DSM 10507]
Length = 365
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 249/349 (71%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD RL +L +S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERLRLLGDFYQSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G V P
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVAP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+RM K K D ++ E L+K++ L +GK A
Sbjct: 120 LRDIETINLELIFSDLEILERRMAKTTKVARNDKEAA----KELEFLKKVKAHLEEGKMA 175
Query: 237 RSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
++ L + E I LLT KP+IY ANV E DLAD G S +V EV N A + S
Sbjct: 176 ITMKLETEDELAYIGSYNLLTYKPVIYAANVCEDDLADDGHSCAYVQEVRNYAQEQNSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL ++ TSGE ET+AW
Sbjct: 236 FVICAQIEQEIAELDDDEKKMFLEDLGLEESGLEKLIKASYRLLGLISFLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLV 344
>gi|422881141|ref|ZP_16927597.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK355]
gi|332365098|gb|EGJ42863.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK355]
Length = 376
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/358 (53%), Positives = 255/358 (71%), Gaps = 15/358 (4%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAAL 223
G+ VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNVL 175
Query: 224 EKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEV 283
+KI+ L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++
Sbjct: 176 QKIKPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQI 235
Query: 284 MNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTY 343
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TY
Sbjct: 236 RKFAATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRTAYHLLGLGTY 295
Query: 344 FTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
FT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 296 FTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAG 353
>gi|161869377|ref|YP_001598544.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis 053442]
gi|161594930|gb|ABX72590.1| GTP-binding protein, putative [Neisseria meningitidis 053442]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|416189052|ref|ZP_11615068.1| GTP-binding protein EngD [Neisseria meningitidis M0579]
gi|325135622|gb|EGC58239.1| GTP-binding protein EngD [Neisseria meningitidis M0579]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMVELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|384921601|ref|ZP_10021576.1| GTP-dependent nucleic acid-binding protein EngD [Citreicella sp.
357]
gi|384464507|gb|EIE49077.1| GTP-dependent nucleic acid-binding protein EngD [Citreicella sp.
357]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 245/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ +++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDTLARIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED+D+ HV+G+V
Sbjct: 61 SKSIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDDDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD + I EL+ +D++ +EKR+ + +K + D + +E + AL ++Q G
Sbjct: 121 DPVSDAETIETELIIADMESLEKRLTNITRKVRGGDKDAVQQERLMRDALAMLEQ----G 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V ++D + + L LLT KP++YV NV ES+ A N V +A++ +
Sbjct: 177 KPARAVEVDDDDVRQWRMLQLLTAKPVLYVCNVDESEAAT--GNALSQAVAAMAAEQGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++L EE +L+ LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVVISAKIEEEISQLDPEEAEMFLSELGLEEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AYDDF+AAG A+E G
Sbjct: 295 WTIRKGTQAPQAAGVIHGDFEKGFIRAETIAYDDFIAAGGEQPAKEAG 342
>gi|316935873|ref|YP_004110855.1| GTP-binding protein YchF [Rhodopseudomonas palustris DX-1]
gi|315603587|gb|ADU46122.1| GTP-binding protein YchF [Rhodopseudomonas palustris DX-1]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/375 (52%), Positives = 253/375 (67%), Gaps = 17/375 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALM-- 231
P +D++ I EL+ +DL+ +EKR++ L KK K D SK + LE + +AL
Sbjct: 121 APLADIETIETELMLADLESLEKRVDNLTKKAKGGDKDSKEQ-------LELVTRALTLL 173
Query: 232 -DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
DGKPAR + E + + L LLT KP++YV NV E A+ N +VM A +
Sbjct: 174 RDGKPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNKFSEQVMARAKEE 231
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V ISA++E+E+ L EER ++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 232 GAVAVVISAKIESEIATLSKEERTDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKE 291
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHE 410
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD++ G A AR+ G + L E
Sbjct: 292 ARAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYIRLGGEAGARDGGKLR-LEGKE 350
Query: 411 HLAS---YKYFHWNS 422
++ + +F +N+
Sbjct: 351 YIVADGDVMHFRFNT 365
>gi|268685828|ref|ZP_06152690.1| translation-associated GTPase [Neisseria gonorrhoeae SK-93-1035]
gi|268626112|gb|EEZ58512.1| translation-associated GTPase [Neisseria gonorrhoeae SK-93-1035]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERALLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|407473741|ref|YP_006788141.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
acidurici 9a]
gi|407050249|gb|AFS78294.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
acidurici 9a]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/347 (53%), Positives = 243/347 (70%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A++AN+PFCTIEPNVG+V+VPD RL L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITSAG-AESANYPFCTIEPNVGVVSVPDERLEGLRLLFDSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED +I HV G++ P
Sbjct: 60 KCVPTAIEFFDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDENITHVEGRISP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL+ +DL+ + KR+E+ +K D + + D L KI+ L DG
Sbjct: 120 IEDIEIINLELILADLEVVTKRIERAQKLLKSDKSLQKEVDL----LIKIKGTLEDGNSV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS+ +D E +K LL+ KPI+YV N++E D+ N +V EV AS S V
Sbjct: 176 RSLEFDDDEVTIVKSFNLLSNKPILYVTNISEEDVISNPENEYVKEVQEYASKEHSQAVI 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISAQ+EAE++EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+G KE +AWTI
Sbjct: 236 ISAQIEAEVSELDDEEKKAFLNDLGLKESGLDKLIKASYKLLGLMSYLTAGPKEVRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G APQAAG IH+D E+GFIRAE + Y D + G A+EKGLV
Sbjct: 296 KIGTKAPQAAGKIHTDMERGFIRAEVINYGDLIECGGYPKAKEKGLV 342
>gi|195977161|ref|YP_002122405.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225867622|ref|YP_002743570.1| GTP-binding protein [Streptococcus equi subsp. zooepidemicus]
gi|414562961|ref|YP_006041922.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|195973866|gb|ACG61392.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225700898|emb|CAW97559.1| putative GTP-binding protein [Streptococcus equi subsp.
zooepidemicus]
gi|338846026|gb|AEJ24238.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 371
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/355 (52%), Positives = 256/355 (72%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPLADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L +GK AR+++ D E+ ++QL LLT KP++YVANV E +A P + +V ++ +
Sbjct: 174 KPVLEEGKSARTISFTDDEQKIVRQLFLLTTKPVLYVANVDEDKVATPDAIDYVKQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKLEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|222086601|ref|YP_002545135.1| GTP-dependent nucleic acid-binding protein EngD [Agrobacterium
radiobacter K84]
gi|398378250|ref|ZP_10536416.1| GTP-binding protein YchF [Rhizobium sp. AP16]
gi|221724049|gb|ACM27205.1| GTP-binding protein [Agrobacterium radiobacter K84]
gi|397725463|gb|EJK85914.1| GTP-binding protein YchF [Rhizobium sp. AP16]
Length = 367
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 249/352 (70%), Gaps = 13/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMEQLAQIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKELIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
+P +D + I EL+ SDL+ +E+R E+ +K GK K+S + L +E + L
Sbjct: 121 NPVADAETIETELMLSDLESLERRTEQTRKRATGKDKESMAMLP------LMEASLKLLN 174
Query: 232 DGKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
+GKP R++ L+D E +K L LLT P++YV NVAE+D N H V +A +
Sbjct: 175 EGKPVRTLLSKLDDEELRILKSLNLLTSHPVLYVCNVAEADAV--AGNEHTAAVAAMAKE 232
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
S V ISA +EAE+ +LP++E +E+L+ LG+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 233 QNSEVVIISAAIEAEVAQLPADEAMEFLSELGLKEAGLDQLIRAGYKLLHLITYFTVGPK 292
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWTI G APQAAGVIHSDFE+GFIRA+T+AY D++A A+E G
Sbjct: 293 ETRAWTIEEGTKAPQAAGVIHSDFERGFIRAQTIAYSDYIAFKGEVGAKENG 344
>gi|126735039|ref|ZP_01750785.1| hypothetical protein RCCS2_14219 [Roseobacter sp. CCS2]
gi|126715594|gb|EBA12459.1| hypothetical protein RCCS2_14219 [Roseobacter sp. CCS2]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 247/350 (70%), Gaps = 11/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGDVAVPDARLDKLAAIAS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED+DI HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRECDAIAHVLRCFEDDDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL---KKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D +VI EL+ +DL+ IEKR++ L +G K++ ++K LE Q AL
Sbjct: 121 DPVEDAEVIETELMLADLESIEKRLQNLVRKVRGGDKEAVQQVK------LLELAQAALE 174
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+V ++D + + K L LLT KP++YV NV E D A G N V +A+
Sbjct: 175 NGKPARTVEVDDDDAKAWKMLQLLTTKPVLYVCNV-EEDSAGSG-NSQSARVAEMAAAQG 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA++E E+++L +EE +L +G+ E+GL LIR+ Y LL L+TYFT G KE
Sbjct: 233 NSHVVISARIEEEISQLEAEEAEMFLEEMGLEEAGLDRLIRAGYELLHLQTYFTVGPKEA 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI+ G +APQAAGVIH DFE+GFIRAET+AYDDFV G A+E G
Sbjct: 293 RAWTIKEGTSAPQAAGVIHGDFERGFIRAETIAYDDFVTLGGEQPAKEAG 342
>gi|422872073|ref|ZP_16918566.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1087]
gi|328945178|gb|EGG39333.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1087]
Length = 376
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/359 (52%), Positives = 255/359 (71%), Gaps = 15/359 (4%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 2 EKIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLT 60
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 61 ELIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMRE 120
Query: 171 NGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAA 222
G+ VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE
Sbjct: 121 QGRESEFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNV 174
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
L+KI+ L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V +
Sbjct: 175 LQKIKPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQ 234
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
+ A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL T
Sbjct: 235 IREFAATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGT 294
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
YFT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 295 YFTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVYYGSEKAVKEAG 353
>gi|238854401|ref|ZP_04644743.1| GTP-binding protein YchF [Lactobacillus jensenii 269-3]
gi|260665094|ref|ZP_05865944.1| translation-associated GTPase [Lactobacillus jensenii SJ-7A-US]
gi|238833023|gb|EEQ25318.1| GTP-binding protein YchF [Lactobacillus jensenii 269-3]
gi|260561148|gb|EEX27122.1| translation-associated GTPase [Lactobacillus jensenii SJ-7A-US]
Length = 366
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 245/350 (70%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPDPRL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDPRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAGLVKGAS+GEGLGNKFL +IR+ D+I+ VVR F+D++I V GKV
Sbjct: 60 AKKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP+ D++ INLEL +DLD + +R+ EKL KG KD++++L A LEKI+ L
Sbjct: 120 DPEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAEL------AVLEKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK RS+ D E+ +K L LLT KP+IYVAN+AE +ADP S+ + V A
Sbjct: 174 EGKAVRSIDFKDDEKKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYFQIVKKHAESEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G + ISA E E+ L +E+ E+L + GV+ESGL LI++ Y LLGLRT+FT+G ET
Sbjct: 234 AGAIAISAATEEEIAGLDDDEKQEFLEAEGVTESGLDRLIKAAYHLLGLRTFFTAGGPET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT GM APQ AGVIHSDFE+GFIRAE V++DD S+ +E G
Sbjct: 294 RAWTFHEGMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKYESMQKVKEAG 343
>gi|422849794|ref|ZP_16896470.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK115]
gi|422863857|ref|ZP_16910487.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK408]
gi|422864849|ref|ZP_16911474.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1058]
gi|422880554|ref|ZP_16927017.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1059]
gi|422883019|ref|ZP_16929468.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK49]
gi|422929983|ref|ZP_16962923.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis ATCC 29667]
gi|422930432|ref|ZP_16963363.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK340]
gi|325689358|gb|EGD31364.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK115]
gi|327471612|gb|EGF17055.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK408]
gi|327490342|gb|EGF22129.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1058]
gi|332363610|gb|EGJ41391.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1059]
gi|332364168|gb|EGJ41945.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK49]
gi|339613616|gb|EGQ18352.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis ATCC 29667]
gi|339621217|gb|EGQ25780.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK340]
Length = 376
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/359 (52%), Positives = 255/359 (71%), Gaps = 15/359 (4%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 2 EKIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLT 60
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 61 ELIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMRE 120
Query: 171 NGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAA 222
G+ VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE
Sbjct: 121 QGRESEFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNV 174
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
L+KI+ L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V +
Sbjct: 175 LQKIKPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQ 234
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
+ A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL T
Sbjct: 235 IREFAATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGT 294
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
YFT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 295 YFTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAG 353
>gi|416174189|ref|ZP_11609150.1| GTP-binding protein EngD [Neisseria meningitidis OX99.30304]
gi|325129577|gb|EGC52401.1| GTP-binding protein EngD [Neisseria meningitidis OX99.30304]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|210622326|ref|ZP_03293095.1| hypothetical protein CLOHIR_01043 [Clostridium hiranonis DSM 13275]
gi|210154314|gb|EEA85320.1| hypothetical protein CLOHIR_01043 [Clostridium hiranonis DSM 13275]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/349 (53%), Positives = 250/349 (71%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PN+G+V+VPDPRL L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNIGVVSVPDPRLDKLKELYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KIVQTAIEFCDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDPNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K K D + E L + L D K
Sbjct: 120 LRDIETINLELIFSDIEVLERRLVKTTKALKADKTLQ----GEVDILNSLMATLEDNKCI 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 295
R++ ++ +K L LLT KP+IYVANV E DLAD G +N V +V A S V
Sbjct: 176 RTMEFDEDTAAFVKSLNLLTSKPVIYVANVCEDDLADDGATNAMVAKVREFAETEGSDTV 235
Query: 296 TISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+EAE++EL + EE+ E+L +LG+ +SGL LIR++Y LLGL ++ T+GE E +AW
Sbjct: 236 VVCAQIEAEISELETDEEKKEFLETLGLEQSGLDKLIRASYHLLGLISFLTAGEMEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQA G IHSD E+GFI+AET+AY+D + G++ AA+EKG V
Sbjct: 296 TIKNGTKAPQAGGKIHSDIERGFIKAETIAYEDLIQYGNMTAAKEKGAV 344
>gi|405382030|ref|ZP_11035852.1| GTP-binding protein YchF [Rhizobium sp. CF142]
gi|397321518|gb|EJJ25934.1| GTP-binding protein YchF [Rhizobium sp. CF142]
Length = 367
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/352 (53%), Positives = 244/352 (69%), Gaps = 13/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPD R+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDERMQKLANIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G++
Sbjct: 61 SKEIIPTRINFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D + I EL+ +DLD +E+R E+ +K GK KDS + L +E L
Sbjct: 121 DPVADAETIETELMLADLDSLERRTEQTRKRATGKDKDSMAMLP------IMEASLALLQ 174
Query: 232 DGKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
DGKP R++ L+ E +K L LLT P++YV NVAE D A N + V +A
Sbjct: 175 DGKPVRTLLSKLDAEETTILKGLNLLTSHPVLYVCNVAEGDAAT--GNQYTEAVAAMAKA 232
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ VTISA +E+E+ +LP EE E+L++LG+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 233 QGAETVTISAAIESEVAQLPDEEAKEFLSALGLDEAGLDRLIRAGYKLLHLITYFTVGPK 292
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++ G A+E G
Sbjct: 293 ETRAWTIERGTKAPQAAGVIHSDFERGFIRANTIAYDDYIQFGGEVGAKEAG 344
>gi|387813297|ref|YP_005428779.1| GTP-dependent nucleic acid-binding protein which may act as a
translation factor [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381338309|emb|CCG94356.1| GTP-dependent nucleic acid-binding protein which may act as a
translation factor [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 251/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLTKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCFED +++HV KV
Sbjct: 60 PERVVPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFEDGNVIHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DLD +EK ++++++ K+ D ++K A+ EK+ L +G
Sbjct: 120 DPASDIEVINTELALADLDTVEKAIKRVQRVAKSGDKEAK----AQLEMFEKLLPVLNEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ L+ + I++LCLLT+KP +Y+ANV E + NPH+++V +A+ +
Sbjct: 176 KPVRSMGLDKDQMTLIRELCLLTVKPTMYIANVNEDGFEN---NPHLDKVREIAASENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++EAE++EL EE+ +L +G+ E GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPICNKLEAEISELEDEEKSMFLDEMGMEEPGLDRVIRAGYGLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R G TAPQAAGVIH+DFE+GFIRAE V+YDDFV A A++ G
Sbjct: 293 WTVRIGATAPQAAGVIHTDFERGFIRAEVVSYDDFVQYNGEAGAKDAG 340
>gi|117924131|ref|YP_864748.1| GTP-binding protein YchF [Magnetococcus marinus MC-1]
gi|117607887|gb|ABK43342.1| GTP-binding protein YchF [Magnetococcus marinus MC-1]
Length = 369
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 251/351 (71%), Gaps = 9/351 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKST FNA+ G A++AN+PFCTIEPNVG+V VPDPRL LS +
Sbjct: 1 MALQCGIVGLPNVGKSTTFNALTAAG-AESANYPFCTIEPNVGVVVVPDPRLDALSAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EF+DIAGLV GAS+GEGLGN+FL HIR+VD+I+ +VRCFED+DI HV +
Sbjct: 60 PQRVLPTTMEFLDIAGLVAGASKGEGLGNQFLGHIRQVDAIVHLVRCFEDDDITHVANSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+++I+ EL+ +D+ EKR +KK K+ D +SK++ D ALEK+ G
Sbjct: 120 DPLRDIEIIDTELILADMASAEKRYNSVVKKAKSGDKESKIQAD----ALEKVIAGFNAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA---DPGSNPHVNEVMNLASDL 290
KP R++ L+ E+ ++ +L LT KP++Y+ NV+ES +A PGS+ V++V A
Sbjct: 176 KPMRNLDLSKEEQATLAELFFLTNKPVLYLCNVSESLVAAAQTPGSHALVDQVREHAKGE 235
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V + +EAE+ EL +E+ +L LG+ ESGL LI++ Y LLGL+TYFT+G KE
Sbjct: 236 GAEVVAVCGSIEAEIAELEGDEKAAFLEDLGLHESGLDRLIQAAYRLLGLQTYFTAGVKE 295
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAP+AAGVIH+DF+KGFIRAE +YDDF+A A A+EKG
Sbjct: 296 VRAWTVKQGATAPEAAGVIHTDFQKGFIRAEVTSYDDFIACKGEAGAKEKG 346
>gi|433501499|ref|ZP_20458480.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM174]
gi|432233340|gb|ELK88968.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM174]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER IK L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMIKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|34499510|ref|NP_903725.1| GTP-dependent nucleic acid-binding protein EngD [Chromobacterium
violaceum ATCC 12472]
gi|34105360|gb|AAQ61715.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 251/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDHRLGELAKIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D +IVHV GKV
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDPNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D++ I EL +DL +EK + + KK KA D ++ A A LEK+ L +G
Sbjct: 120 DPIADIETILTELALADLSAVEKAIAREGKKAKAGDKDAR----ALIAILEKLVPHLNEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ L+D ++ IK LCLLT+KP +YVANVAE +D NP + +V A+ +
Sbjct: 176 KPARSLGLSDEDKALIKPLCLLTIKPAMYVANVAEDGFSD---NPLLAKVEEYAAKEGAP 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL ++ E+L +LG+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAAIESEIAELEDADKAEFLETLGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAGVIH+DFE+GFIRA+T+++ DFV G A A+E G
Sbjct: 293 WTIHVGDTAPQAAGVIHTDFERGFIRAQTISFQDFVTLGGEAKAKEAG 340
>gi|242372650|ref|ZP_04818224.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
gi|242349705|gb|EES41306.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 247/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ ++KR+ K++K + KD +++ E L KI++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVDKRLPKIEKMARQKDKTAEM----ELRILTKIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAEKEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT R GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G
Sbjct: 295 WTFRQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEYGGENGAKEAG 342
>gi|414160172|ref|ZP_11416443.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878822|gb|EKS26692.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 250/350 (71%), Gaps = 11/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLDALADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKVLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++VIN+ELV +DL+ ++K R+EK+ + K KD+ ++++ LE+I++AL
Sbjct: 120 DPLDDIEVINMELVLADLESVDKRLPRLEKMARQKDKDALNEVR------ILERIKEALE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+P RS+ N+ + +KQ LLT KP+IY+ANV E D + N V + A
Sbjct: 174 NGEPIRSLEFNEEDAKYVKQAQLLTSKPMIYIANVGE-DEVNEADNEKVQTIKEYADKEG 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + ISA++E E+ L E++ +L LG+ E GL LIRSTY+LLGL TYFT+G +E
Sbjct: 233 SEVIVISAKIEEEIATLDDEDKDMFLEDLGIEEPGLNRLIRSTYNLLGLATYFTAGVQEV 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V A+E G
Sbjct: 293 RAWTFKKGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVENNGEQGAKEAG 342
>gi|187930207|ref|YP_001900694.1| GTP-dependent nucleic acid-binding protein EngD [Ralstonia
pickettii 12J]
gi|187727097|gb|ACD28262.1| GTP-binding protein YchF [Ralstonia pickettii 12J]
Length = 364
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 247/349 (70%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPD RL L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDARLQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GKV
Sbjct: 60 PERVLPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++VIN EL +DL +EK +++ K ++S ++A K A LEK Q+ L +
Sbjct: 120 DPIADIEVINTELALADLATVEKALQRYTKA----AKSGNDKEAAKLVAVLEKAQKVLDE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KP R + L D E +IK LCL+T KP +YVANV E + NPH++ V N A+ S
Sbjct: 176 AKPVRGLNLTDDEWATIKPLCLITAKPTMYVANVREDGFEN---NPHLDAVRNYAAQTNS 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +EAE+ +L ++ E+LA +G+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 233 PVVAVCAAIEAEIADLDDADKAEFLADIGMDEPGLNRVIRAAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAP+AA IH+DFE+GFIRA+T++YDDF+ A+E G
Sbjct: 293 AWTIHIGDTAPRAAAAIHTDFERGFIRAQTISYDDFIQYKGEQGAKEAG 341
>gi|253681986|ref|ZP_04862783.1| GTP-binding protein YchF [Clostridium botulinum D str. 1873]
gi|253561698|gb|EES91150.1| GTP-binding protein YchF [Clostridium botulinum D str. 1873]
Length = 365
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 252/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + +++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYETK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF+D++IVHV G +DP
Sbjct: 60 KKIYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFQDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALMDGKP 235
D++ INLEL+ +DL+ IE+R EK + ++S +KE E LEK++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TVRSARSGVKEAKIELPILEKVKAHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
RS+ L E++ +K L+T KPI+YV+N+ E DL N V +V A + S
Sbjct: 176 VRSLELTKDEQEIVKGFFLITSKPILYVSNICEDDLVSGNIENEFVKKVKEYAKEEDSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI G AP+AAG IH+D E+GFIRAE V+Y+D V GS AAA+EKGL
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYNDLVECGSEAAAKEKGL 343
>gi|120555280|ref|YP_959631.1| GTP-dependent nucleic acid-binding protein EngD [Marinobacter
aquaeolei VT8]
gi|120325129|gb|ABM19444.1| GTP-binding protein YchF [Marinobacter aquaeolei VT8]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 251/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLTKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCFED +++HV KV
Sbjct: 60 PERVVPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFEDGNVIHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DLD +EK ++++++ K+ D ++K A+ EK+ L +G
Sbjct: 120 DPASDIEVINTELALADLDTVEKAIKRVQRVAKSGDKEAK----AQLEMFEKLLPVLNEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ L+ + I++LCLLT+KP +Y+ANV E + NPH+++V +A+ +
Sbjct: 176 KPVRSMGLDKDQMALIRELCLLTVKPTMYIANVNEDGFEN---NPHLDKVREIAASENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++EAE++EL EE+ +L +G+ E GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPICNKLEAEISELEDEEKSMFLDEMGMEEPGLDRVIRAGYGLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R G TAPQAAGVIH+DFE+GFIRAE V+YDDFV A A++ G
Sbjct: 293 WTVRIGATAPQAAGVIHTDFERGFIRAEVVSYDDFVQYNGEAGAKDAG 340
>gi|408374417|ref|ZP_11172104.1| GTP-binding protein YchF [Alcanivorax hongdengensis A-11-3]
gi|407765692|gb|EKF74142.1| GTP-binding protein YchF [Alcanivorax hongdengensis A-11-3]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/350 (53%), Positives = 246/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPRL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPVPDPRLDKLAAIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D ++VHV GKV
Sbjct: 60 PERVMPATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDENVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
P D+ VIN EL +DLD +EK R K KG+ KD++ L L+K+ AL
Sbjct: 120 SPLDDIAVINTELALADLDTVEKAHLRATKAAKGQDKDAKGLLP------VLDKLLPALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+PARSV L+ ER ++K L LLT+KP +Y+ANV E +N ++ V LA
Sbjct: 174 EGEPARSVELDSDERKTLKSLNLLTLKPTMYIANVDEDGFE---NNALLDAVRALAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A++E+E+ EL EE+ ++LA LG+ E GL +IR+ + LLGL+TYFT+G+KE
Sbjct: 231 ASVVPICAKIESEIAELDDEEKADFLADLGMEEPGLNRVIRAGFDLLGLQTYFTAGKKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAAGVIH+DFEKGFIRAE AYDD++ + A++ G
Sbjct: 291 RAWTVRVGATAPQAAGVIHTDFEKGFIRAEVTAYDDYIEHNGESGAKDAG 340
>gi|336450043|ref|ZP_08620500.1| GTP-binding protein YchF [Idiomarina sp. A28L]
gi|336283200|gb|EGN76407.1| GTP-binding protein YchF [Idiomarina sp. A28L]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/378 (50%), Positives = 254/378 (67%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G AANFPFCTIEPN G+V+VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAANFPFCTIEPNTGVVSVPDTRLTQLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I VVRCFED +IVHV GKV
Sbjct: 60 PQRVIPTTMEFVDIAGLVKGASKGEGLGNQFLANIRETDAIGHVVRCFEDENIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL +DLD +EK + +L KK K D Q+K E A LEK+ AL +G
Sbjct: 120 DPLEDIDTINTELALADLDSVEKAVYRLSKKAKGGDKQAK----DEVAVLEKLLPALAEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARSV L+D ++ I+ LLT+KP +Y+ NVAE +NPH+ V LA + +
Sbjct: 176 HMARSVELSDDDKKVIRSFNLLTLKPTMYICNVAEDGFE---NNPHLETVRKLAENENAI 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL +E+ E+L S+G+ E GL +IR+ Y LL L TYFT+G KE +A
Sbjct: 233 VVPVCAAIESEIAELEDDEKAEFLDSMGLEEPGLNRVIRAGYELLNLHTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ TAPQAAG IH+DFEKGFIRAE V +DDF+ A++ G W L
Sbjct: 293 WTVKKRSTAPQAAGRIHTDFEKGFIRAEIVGFDDFINNNGEQGAKDAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 346 GKEYIVKDGDVIHFRFNV 363
>gi|240146616|ref|ZP_04745217.1| GTP-binding protein YchF [Roseburia intestinalis L1-82]
gi|257201239|gb|EEU99523.1| GTP-binding protein YchF [Roseburia intestinalis L1-82]
Length = 366
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 257/351 (73%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K E +E +++ L DGK A
Sbjct: 120 ARDIETINLELIFSDIEILDRRISKIAK-QARMDKTLAK---ELELVEAVKKHLEDGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
R+ + D + I K LLT KP+IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 176 RTFEVPDDDDAQIWFKGYNLLTAKPMIYAANVAEDDLADDGASNPHVAKVREMAKEEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL EL +E+ EYL LGV SGL L+ ++YSLLGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELAELDEDEKKEYLEDLGVESSGLDKLVAASYSLLGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLSAAREKGIVG 346
>gi|163744221|ref|ZP_02151581.1| GTP-binding protein YchF [Oceanibulbus indolifex HEL-45]
gi|161381039|gb|EDQ05448.1| GTP-binding protein YchF [Oceanibulbus indolifex HEL-45]
Length = 365
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 247/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDTLAEIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKSIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I+ EL+ +D++ IEKR++ + +K + D ++ +E + ALE AL G
Sbjct: 121 DPVADAETIDTELMLADIESIEKRLQNIVRKVRGGDKEAVQQERLMRKALE----ALEAG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR V +++ + + + L LLT KP++YV NV E++ A+ N H +V +A+ +
Sbjct: 177 NPARVVEVDEDDAKAWRMLQLLTTKPVLYVCNVGEAEAAE--GNDHSAKVAEMAAAQGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L +EE +L +G+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVVISAQIEEEISQLEAEEAEMFLEEMGLKEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI+ G +AP+AAGVIH DFEKGFIRAET+AYDDF+ G A+E G
Sbjct: 295 WTIKTGTSAPKAAGVIHGDFEKGFIRAETIAYDDFIGLGGEGPAKEAG 342
>gi|431930972|ref|YP_007244018.1| GTP-binding protein YchF [Thioflavicoccus mobilis 8321]
gi|431829275|gb|AGA90388.1| GTP-binding protein YchF [Thioflavicoccus mobilis 8321]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/347 (53%), Positives = 244/347 (70%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+VA+PDPRL V++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTQATIA-AENYPFCTIDPNVGVVALPDPRLDVIAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +++FVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED+D+VHV+G+V
Sbjct: 60 PQKVIPTTMQFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDDVVHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++VIN EL +DL+ +EK +++ + + L KA LE++++ L G
Sbjct: 120 DPVGDIEVINTELALADLESVEKALDRAVRAAKTGDKRVL---GRKALLERVREQLDRGL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R++ L+D R+ ++ L LLT KP +YVANVAE D NP + V LA+D +
Sbjct: 177 PVRAMGLDDEAREELRDLFLLTAKPTMYVANVAEDGFTD---NPLLGAVEALAADEGAEV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A +EAEL L ER ++LA LG+SE GL ++R+ Y LLGL TYFT G KE +AW
Sbjct: 234 VPVCAAIEAELVALEEAERADFLAELGLSEPGLNRVVRAGYRLLGLETYFTVGPKEARAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI APQAAGVIHSDFE+GFIRAE + Y+DFVA A+E+G
Sbjct: 294 TIPRSAKAPQAAGVIHSDFERGFIRAEVIGYEDFVACRGEQGAKEQG 340
>gi|414168419|ref|ZP_11424478.1| GTP-binding protein YchF [Afipia clevelandensis ATCC 49720]
gi|410887691|gb|EKS35498.1| GTP-binding protein YchF [Afipia clevelandensis ATCC 49720]
Length = 365
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 241/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SAQIIPTQLTFVDIAGLVRGASKGEGLGNQFLANIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DLD +EKR++ L KK K D SK + D +E+ + L DG
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDNLSKKAKGGDKDSKEQLD----LVERALKLLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP R + E + + L LLT KP++YV NV E A N V + A +
Sbjct: 177 KPTRGMERKPEEERNFRMLGLLTSKPVLYVCNVEEGSAAT--GNSFSQAVFDHAKKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVVISAKIESEIATLSREERVDFLDTLGLEEAGLDRLIRAGYELLHLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AY+D+VA A AR+ G
Sbjct: 295 WTITKGTKAPAAAGVIHTDFEKGFIRAETIAYEDYVALNGEAGARDAG 342
>gi|260437309|ref|ZP_05791125.1| GTP-binding protein YchF [Butyrivibrio crossotus DSM 2876]
gi|292810221|gb|EFF69426.1| GTP-binding protein YchF [Butyrivibrio crossotus DSM 2876]
Length = 365
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V+VPD RL +LS L S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVSVPDERLQLLSDLYNSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA +EFVDIAGLVKGAS+GEGLGN+FLSHIRE D+I+ VVRCFE+++IVHV+G +DP
Sbjct: 60 KIVPAVIEFVDIAGLVKGASKGEGLGNQFLSHIRETDAIVHVVRCFENSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D INLEL+FSD+D I++R+ K+ +G D E LE+++ L DGK A
Sbjct: 120 LRDIDTINLELIFSDIDIIDRRIAKVSRGARNDKALA----KELELLEELKAHLEDGKAA 175
Query: 237 RS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
RS VT +D ++ + LLT KP+IY ANV+E DLAD G SN +V +V A+ S
Sbjct: 176 RSFVTDDDDKKALLSTYDLLTFKPVIYAANVSEDDLADDGASNENVAKVREFAASEGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E E++EL +E+ +L LG+ ESGL LI+++Y LLGL ++ T+G ET+AW
Sbjct: 236 FVVCAQIEEEISELEDDEKKMFLEDLGLKESGLDKLIKASYKLLGLISFLTAGPTETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G AP AAG IHSDFE+GFI+AE V Y D + GS AAA+EKGLV
Sbjct: 296 TIKKGTKAPGAAGKIHSDFERGFIKAEVVYYKDLLECGSYAAAKEKGLV 344
>gi|421568334|ref|ZP_16014060.1| GTP-binding protein EngD [Neisseria meningitidis NM3001]
gi|402342062|gb|EJU77233.1| GTP-binding protein EngD [Neisseria meningitidis NM3001]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|456062478|ref|YP_007501448.1| GTP-binding protein YchF [beta proteobacterium CB]
gi|455439775|gb|AGG32713.1| GTP-binding protein YchF [beta proteobacterium CB]
Length = 364
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/347 (53%), Positives = 249/347 (71%), Gaps = 6/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GK+
Sbjct: 60 PERILPATVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDANVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD+ VI+ EL SDL +EK ++ + KA S + + A A L K+Q L +
Sbjct: 120 DPISDIAVIDTELALSDLTTVEKTLQ--RSSKAAKSGNDKEAAALVAVLTKVQAHLDQAQ 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RS+ L+D E +K LCL+T KP +Y+ANV E +NPH+ V+ A+ +
Sbjct: 178 PVRSLKLSDEENLLLKPLCLITAKPAMYIANVKEDGF---DNNPHLEAVIQHAAKEGAPV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A +EAE+ +L +++E+LA LG+ ESGL +IR+ Y LLGL+TYFT+G KE +AW
Sbjct: 235 VAVCAAIEAEIADLDDADKLEFLADLGMEESGLDRVIRAGYKLLGLQTYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G TAPQAAGVIH+DFE+GFIRA+T+A++DF+ + A+E G
Sbjct: 295 TIHQGDTAPQAAGVIHTDFERGFIRAQTIAFEDFIQFKGESGAKEAG 341
>gi|429745224|ref|ZP_19278658.1| GTP-binding protein YchF [Neisseria sp. oral taxon 020 str. F0370]
gi|429161058|gb|EKY03498.1| GTP-binding protein YchF [Neisseria sp. oral taxon 020 str. F0370]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMDALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIAREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DFVA G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVALGGEAKAKEAG 340
>gi|225569225|ref|ZP_03778250.1| hypothetical protein CLOHYLEM_05307 [Clostridium hylemonae DSM
15053]
gi|225162024|gb|EEG74643.1| hypothetical protein CLOHYLEM_05307 [Clostridium hylemonae DSM
15053]
Length = 366
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 257/350 (73%), Gaps = 8/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDGNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K K A++ ++ K E A LEKI+ L + + A
Sbjct: 120 LRDIETINLELIFSDLEILERRISKTAK-VARNDKTAAK---ELALLEKIKAHLEENRLA 175
Query: 237 RSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
++ T ++ E + +K LLT KP+IY ANVAE DLAD G+ N V V AS S
Sbjct: 176 KTFDKTEDEEEEEWLKSYNLLTYKPVIYAANVAEDDLADDGAENAGVQAVREYASKEASE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ AQ+E E+ EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +A
Sbjct: 236 VFVVCAQIEQEIAELDDEEKKMFLEELGLEESGLEKLIKASYRLLGLISYLTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G APQAAG IH+DFE+GFIRAE V+YDD + GS AA+EKGLV
Sbjct: 296 WTITEGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMECGSHGAAKEKGLV 345
>gi|160893902|ref|ZP_02074681.1| hypothetical protein CLOL250_01457 [Clostridium sp. L2-50]
gi|156864280|gb|EDO57711.1| GTP-binding protein YchF [Clostridium sp. L2-50]
Length = 389
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 256/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD RL L+ + S
Sbjct: 25 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERLDKLTEMYHSA 83
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 84 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVDP 143
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K +G D + D + ++I+ L +GK A
Sbjct: 144 IRDIETINLELIFSDIEVLDRRIAKTIRGARNDKMLAKELDFQ----QRIKAHLEEGKLA 199
Query: 237 RSVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+++ + D E+ I++ LLT KP+I+ ANV+E D+AD G SN +V +V A + S
Sbjct: 200 KTLEVTDEDEQGWIEEYNLLTWKPVIFAANVSEDDVADDGASNEYVQKVKEYAKEFDSEV 259
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E EL EL EE+ +L LGV ESGL LI+++YSLLGL +Y T+GE E++AW
Sbjct: 260 FVVCAQIEQELAELDDEEKKMFLEDLGVKESGLDKLIKASYSLLGLISYLTAGETESRAW 319
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G AP AAG IHSDFE+GFI+AE V+Y D + G++ AA+EKGLV
Sbjct: 320 TIKKGTKAPGAAGKIHSDFERGFIKAEVVSYKDLMECGNMVAAKEKGLV 368
>gi|54298643|ref|YP_125012.1| GTP-dependent nucleic acid-binding protein EngD [Legionella
pneumophila str. Paris]
gi|53752428|emb|CAH13860.1| hypothetical protein lpp2707 [Legionella pneumophila str. Paris]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/348 (54%), Positives = 249/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSNIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ V A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVVHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
DP SD++VIN EL +D++ +EK + K+ K+S+S KE E LEKI+ L G
Sbjct: 120 DPLSDIEVINTELALADMETLEKSLLKV----GKNSKSGNKEAIFELKTLEKIKAHLDAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS +
Sbjct: 176 YPVRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVQALASQENAS 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G
Sbjct: 293 WTIRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAG 340
>gi|345876540|ref|ZP_08828308.1| GTP-binding and nucleic acid-binding protein YchF [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344226507|gb|EGV52842.1| GTP-binding and nucleic acid-binding protein YchF [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 389
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 255/349 (73%), Gaps = 9/349 (2%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+V +PDPRL ++G+
Sbjct: 26 NMGFKCGIVGLPNVGKSTLFNALTKATIA-AENYPFCTIDPNVGVVPLPDPRLDAIAGIV 84
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
Q +P +++FVDIAGLV+GAS+GEGLGNKFL++IRE D++ QVVRCFE++D+VHV GK
Sbjct: 85 NPQAVLPTTMQFVDIAGLVEGASKGEGLGNKFLANIRETDAVAQVVRCFENDDVVHVAGK 144
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232
+DP +DV VIN EL +DL+ +EK ++K +++ K D K A KA LE+I+ L D
Sbjct: 145 IDPLADVQVINNELALADLESVEKALDKTIRQAKTGDK----KVLARKALLERIRDHLYD 200
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GK RS+ L+D E I++L LLT+KPI+Y+ANVAE D NPH++ + LAS +
Sbjct: 201 GKSVRSMALSDDELQEIRELFLLTVKPILYIANVAEDGFED---NPHLDALNTLASAEGA 257
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V++ A +EAE+ EL +ER E+L+ LG+ E GL ++R+ Y LLGL TYFT+GEKE +
Sbjct: 258 EVVSVCAAIEAEIVELEEDEREEFLSDLGLDEPGLNRVVRAGYQLLGLETYFTAGEKEVR 317
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI A +APQAAGVIH+DFE+GFIRAE ++YDDFV ARE G
Sbjct: 318 AWTIPANASAPQAAGVIHTDFERGFIRAEVISYDDFVKFRGEQGAREAG 366
>gi|295109199|emb|CBL23152.1| GTP-binding protein YchF [Ruminococcus obeum A2-162]
Length = 365
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLKLIGDFYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDPNVIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K+ K D ++ + D L+K+++ L DG A
Sbjct: 120 LRDIETINLELIFSDIEILERRIAKVTKTARMDKEAAKELD----FLQKVKKHLEDGNMA 175
Query: 237 RSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
++ L ++ E + LLT KP+IY ANV+E DLAD G SN HV V A++ +S
Sbjct: 176 ITMELESEDEEGWMGTYNLLTWKPVIYAANVSEDDLADDGESNAHVQAVRKYAAEQKSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I A++E E++EL +E+ +L LG+ ESGL L++++YSLLGL ++ TSGE ET+AW
Sbjct: 236 FVICAEIEEEISELDDDEKKMFLEDLGLKESGLEKLVKASYSLLGLMSFLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGLV
Sbjct: 296 TIKTGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLV 344
>gi|295697819|ref|YP_003591057.1| GTP-binding protein YchF [Kyrpidia tusciae DSM 2912]
gi|295413421|gb|ADG07913.1| GTP-binding protein YchF [Kyrpidia tusciae DSM 2912]
Length = 359
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/345 (56%), Positives = 243/345 (70%), Gaps = 10/345 (2%)
Query: 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121
+GLPNVGKSTLFNA+ G A+ AN+PFCTI+PNVG+V VPD RL L+ L K VPA
Sbjct: 1 MGLPNVGKSTLFNAITRAG-AETANYPFCTIDPNVGVVQVPDERLVRLAELFHPGKVVPA 59
Query: 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD 181
EFVDIAGLVKGAS GEGLGN+FLSHIREVD+I+ VVRCFED DI HV G+V P D++
Sbjct: 60 VFEFVDIAGLVKGASHGEGLGNQFLSHIREVDAIVHVVRCFEDPDITHVAGRVSPVDDIE 119
Query: 182 VINLELVFSDLDQIEKRMEK---LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
IN+EL +DL+ +E+R+EK L+KG K + D E A LE+IQ+ L +GK R
Sbjct: 120 TINVELNLADLETVERRIEKTRRLRKGGDK------RYDWELALLERIQRLLAEGKGVRG 173
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
++ E + L LLT KP+ YVANV E D+A +P V EV A + + +S
Sbjct: 174 QGWSEEESQFLSDLHLLTAKPVFYVANVDERDVATAWEHPMVQEVRRHARVEGAEVIPVS 233
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A++EAE+ EL E+R +LA G+ ESGL + R+ Y LLGL TYFT+G+KE KAWTI
Sbjct: 234 ARLEAEIAELEGEDRDLFLAEAGLQESGLDRITRAAYKLLGLITYFTAGDKEVKAWTIVK 293
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G APQAAGVIHSDFE+GFIRAE ++Y+D V AGS AAARE+GL+
Sbjct: 294 GTKAPQAAGVIHSDFERGFIRAEVISYEDLVRAGSTAAAREQGLL 338
>gi|261401572|ref|ZP_05987697.1| GTP-binding protein YchF [Neisseria lactamica ATCC 23970]
gi|269208342|gb|EEZ74797.1| GTP-binding protein YchF [Neisseria lactamica ATCC 23970]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDLLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|319781880|ref|YP_004141356.1| GTP-binding protein YchF [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167768|gb|ADV11306.1| GTP-binding protein YchF [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 367
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/351 (52%), Positives = 247/351 (70%), Gaps = 11/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPRL ++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + + EL+ +DLD +E+R+ + K+ +KD ++ +AALE +Q G
Sbjct: 121 DPVADAETVETELMLADLDSLERRIVQFRKRAGSKDKEATSVLPMMEAALELLQA----G 176
Query: 234 KPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
KP R + L D + ++ L LLT P++YV NVAE+D A N H V +A+
Sbjct: 177 KPTR-ILLKDISAEDLRILQGLNLLTSHPVLYVCNVAEADAAT--GNEHTRAVEKMATAQ 233
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+G V ISA +EAE+ +L EE +E+L+SLG+ E GL +IR+ Y LL L TYFT G KE
Sbjct: 234 GAGTVVISAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKIIRAGYDLLHLITYFTVGPKE 293
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T+AWTI G APQAAGVIH+DFE+GFIRA+T+AY+DFV G AA+E G
Sbjct: 294 TRAWTIHKGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVTLGGEVAAKEAG 344
>gi|313669061|ref|YP_004049345.1| hypothetical protein NLA_17840 [Neisseria lactamica 020-06]
gi|313006523|emb|CBN87987.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|90418286|ref|ZP_01226198.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
gi|90337958|gb|EAS51609.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
Length = 367
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 250/350 (71%), Gaps = 9/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + A AAN+PFCTIEPN G V VPDPRL ++G++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKTAAAAAANYPFCTIEPNTGDVPVPDPRLKDIAGIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+D+VHV G+V
Sbjct: 61 SANILPTRITFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDVVHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM-EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + + EL+ SDL+ +E+R+ KK KD ++ +AAL K+Q +G
Sbjct: 121 DPVADAETVETELMLSDLESLERRIVATRKKATGKDKEAIQALPVMEAALAKLQ----NG 176
Query: 234 KPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+P R + ++ ER +K L LLT KP++YV NVAE D A N H V +A
Sbjct: 177 EPVRVLLAGMDAEERSELKTLNLLTSKPVLYVCNVAEDDAAS--GNAHSQAVAAMAQKQG 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +EAE+ +LP+EE +YL ++G++E GL LI++ YSLL L TYFT+G KET
Sbjct: 235 AKSVVISAAIEAEIAQLPAEEVGDYLEAMGLTEPGLDRLIQAGYSLLDLITYFTAGPKET 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G APQAAGVIH+DFEKGFIRA+T+A+DDFV+ G AA+E G
Sbjct: 295 RAWTVRRGAKAPQAAGVIHTDFEKGFIRAQTIAFDDFVSLGGEVAAKEAG 344
>gi|225869492|ref|YP_002745439.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. equi 4047]
gi|225698896|emb|CAW91880.1| putative GTP-binding protein [Streptococcus equi subsp. equi 4047]
Length = 371
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 255/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE A LEKI
Sbjct: 120 DAFVDPLADIDTINLELILADLESINKRYARVEKMARTQKDKDSV------AEFAVLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L +GK AR+++ D E+ ++QL LLT KP++YVANV E +A P + +V ++ +
Sbjct: 174 KPVLEEGKSARTISFTDDEQKIVRQLFLLTTKPVLYVANVDEDKVAIPDAIDYVKQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDRSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|417902675|ref|ZP_12546540.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21266]
gi|341842651|gb|EGS83886.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21266]
Length = 365
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 259/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINTELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|282856257|ref|ZP_06265540.1| GTP-binding protein YchF [Pyramidobacter piscolens W5455]
gi|282586016|gb|EFB91301.1| GTP-binding protein YchF [Pyramidobacter piscolens W5455]
Length = 363
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/347 (54%), Positives = 247/347 (71%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A A+N+PFCTIEPNVG+V VPDPRL VLS + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITAAG-ADASNYPFCTIEPNVGVVEVPDPRLKVLSDMFHSV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEF DIAGLV+GAS+GEGLGNKFL++IRE +I+QVVRCFE+ +IVHV+G V+P
Sbjct: 60 KITPAVVEFYDIAGLVRGASKGEGLGNKFLANIREASAIVQVVRCFENPNIVHVDGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I LEL+ SDL+ +E+ + KL+K D KL D E L + + L GK
Sbjct: 120 ARDIETIELELILSDLEMVERNLAKLEKLAKADK--KLAPDLE--LLRRAKATLEAGKLV 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ LND E+ ++ L LL+ KP++YVAN+AE ++ N + V + A + VT
Sbjct: 176 RTLALNDEEKQHLRGLNLLSDKPMLYVANIAEDEIGATALNEYAQVVCDHAKAEGAEFVT 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
I AQVEAE+ EL E+ EYL +LG+ E+GL LI + Y LLGL ++ T+GEKE++AW I
Sbjct: 236 ICAQVEAEIAELDDAEKTEYLEALGLKEAGLDRLISAGYRLLGLISFLTAGEKESRAWPI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
R G APQAAG IHSDFE+GFIRA+ V YDD +A GS+A A+ KGL+
Sbjct: 296 RRGTLAPQAAGTIHSDFERGFIRAQIVGYDDLIACGSVAEAKAKGLL 342
>gi|422822810|ref|ZP_16870999.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK405]
gi|422825227|ref|ZP_16873406.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK678]
gi|422852628|ref|ZP_16899292.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK160]
gi|422856239|ref|ZP_16902896.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1]
gi|324991862|gb|EGC23785.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK405]
gi|324996248|gb|EGC28158.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK678]
gi|325698028|gb|EGD39909.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK160]
gi|327458486|gb|EGF04836.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1]
Length = 376
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/359 (52%), Positives = 255/359 (71%), Gaps = 15/359 (4%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 2 EKIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDVRLDKLT 60
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 61 ELIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMRE 120
Query: 171 NGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAA 222
G+ VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE
Sbjct: 121 QGRESEFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNV 174
Query: 223 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
L+KI+ L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V +
Sbjct: 175 LQKIKPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQ 234
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 342
+ A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL T
Sbjct: 235 IREFAATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGT 294
Query: 343 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
YFT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 295 YFTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAG 353
>gi|225377860|ref|ZP_03755081.1| hypothetical protein ROSEINA2194_03519 [Roseburia inulinivorans DSM
16841]
gi|225210298|gb|EEG92652.1| hypothetical protein ROSEINA2194_03519 [Roseburia inulinivorans DSM
16841]
Length = 366
Score = 370 bits (949), Expect = e-99, Method: Compositional matrix adjust.
Identities = 193/351 (54%), Positives = 255/351 (72%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K E +E I+ L GK A
Sbjct: 120 ARDIETINLELIFSDIEILDRRIAKISK-QARMDKTLAK---ELELVEAIKAHLEAGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
RS + D E I K LLT KP IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 176 RSFEVPDDEDAEIWFKGYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMAKEEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL EL +E+ EYL LGV+ SGL L+ ++YSLLGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELAELDEDEKKEYLDDLGVTSSGLDKLVAASYSLLGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLAAAREKGIVG 346
>gi|237749586|ref|ZP_04580066.1| GTP-dependent nucleic acid-binding protein EngD [Oxalobacter
formigenes OXCC13]
gi|229380948|gb|EEO31039.1| GTP-dependent nucleic acid-binding protein EngD [Oxalobacter
formigenes OXCC13]
Length = 363
Score = 370 bits (949), Expect = e-99, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 250/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A N+PFCTIEPNVGIV VPD RL+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IPAENYPFCTIEPNVGIVEVPDNRLNDLASIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL+HIRE D+I+QVVRCF+++++VHV GKV
Sbjct: 60 PERILPAVVEFVDIAGLVAGASKGEGLGNQFLAHIRETDAIVQVVRCFQNDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKA-ALEKIQQALMDG 233
DP SD++VI EL +DL+ +E+ + + + K +QS KE A LE++ L
Sbjct: 120 DPLSDIEVIQTELALADLNTVERTIAR----EIKKAQSGNKESARLCNILERVAAHLNKA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RS+ L+ E + I+ LCL+T KP +YVANV+E D NP ++++ A +
Sbjct: 176 EPVRSMGLDKEEMELIRPLCLITAKPTMYVANVSEDGFTD---NPLLDQLKQYAESQNAP 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I A +E+E+ ELP E+R E+L+ +G+ E GL LIR+ + LLGL+TYFT+G KE +A
Sbjct: 233 IVAICAAIESEIVELPEEDRAEFLSDMGMDEPGLNRLIRAAFKLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAGVIH+DFE+GFIRA+T+++DD++ A+E G
Sbjct: 293 WTIHIGDTAPQAAGVIHTDFERGFIRAQTISFDDYITCKGEVGAKEAG 340
>gi|145588330|ref|YP_001154927.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046736|gb|ABP33363.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 364
Score = 370 bits (949), Expect = e-99, Method: Compositional matrix adjust.
Identities = 187/347 (53%), Positives = 245/347 (70%), Gaps = 6/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GK+
Sbjct: 60 PERVLPAAVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDPNVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +D+ VI+ EL SDL +EK + + KA S + + A A L K+Q L
Sbjct: 120 DPIADIGVIDTELALSDLATVEKTLN--RSSKAAKSGNDKEAAALVAVLTKVQAHLDSAL 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RS+ L D E+ IK LCL+T KP +YVANV E + NPH+ V A+ +
Sbjct: 178 PVRSMNLTDDEKLLIKPLCLITAKPAMYVANVKEDGFEN---NPHLEAVKQHAAKENAPV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A +EAE+ +L ++ E+LA LG++E GL +IR+ Y+LLGL TYFT+G KE +AW
Sbjct: 235 VAVCAAIEAEIADLDDVDKTEFLADLGMAEPGLDRVIRAGYALLGLHTYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G TAPQAAGVIH+DFE+GFIRA+T+AYDDF+ + A+E G
Sbjct: 295 TIHQGDTAPQAAGVIHTDFERGFIRAQTIAYDDFIQFKGESGAKEAG 341
>gi|309782972|ref|ZP_07677692.1| GTP-binding protein YchF [Ralstonia sp. 5_7_47FAA]
gi|404397670|ref|ZP_10989460.1| GTP-dependent nucleic acid-binding protein engD [Ralstonia sp.
5_2_56FAA]
gi|308918396|gb|EFP64073.1| GTP-binding protein YchF [Ralstonia sp. 5_7_47FAA]
gi|348612559|gb|EGY62173.1| GTP-dependent nucleic acid-binding protein engD [Ralstonia sp.
5_2_56FAA]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 247/349 (70%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPD RL L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDARLQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GKV
Sbjct: 60 PERVLPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++VIN EL +DL +EK +++ K ++S ++A K A LEK Q+ L +
Sbjct: 120 DPIADIEVINTELALADLSTVEKALQRYTKA----AKSGNDKEAAKLVAVLEKAQKVLDE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KP R + L D E ++K LCL+T KP +YVANV E + NPH++ V N A+ S
Sbjct: 176 AKPVRGLNLTDDEWATLKPLCLITAKPTMYVANVREDGFEN---NPHLDAVRNYAAQTNS 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +EAE+ +L ++ E+LA +G+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 233 PVVAVCAAIEAEIADLDDADKAEFLADIGMDEPGLNRVIRAAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAP+AA IH+DFE+GFIRA+T++YDDF+ A+E G
Sbjct: 293 AWTIHIGDTAPRAAAAIHTDFERGFIRAQTISYDDFIQYKGEQGAKEAG 341
>gi|416207687|ref|ZP_11620993.1| GTP-binding protein EngD [Neisseria meningitidis 961-5945]
gi|325141641|gb|EGC64103.1| GTP-binding protein EngD [Neisseria meningitidis 961-5945]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|15677674|ref|NP_274835.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis MC58]
gi|218767578|ref|YP_002342090.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis Z2491]
gi|385339416|ref|YP_005893288.1| GTP-binding protein EngD [Neisseria meningitidis G2136]
gi|385853894|ref|YP_005900408.1| GTP-binding protein EngD [Neisseria meningitidis H44/76]
gi|416198501|ref|ZP_11618977.1| GTP-binding protein EngD [Neisseria meningitidis CU385]
gi|421561864|ref|ZP_16007701.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM2657]
gi|427827764|ref|ZP_18994788.1| GTP-dependent nucleic acid-binding protein engD [Neisseria
meningitidis H44/76]
gi|433465819|ref|ZP_20423290.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM422]
gi|433467886|ref|ZP_20425335.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
87255]
gi|433480407|ref|ZP_20437689.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63041]
gi|433489004|ref|ZP_20446154.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M13255]
gi|433491192|ref|ZP_20448305.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM418]
gi|433505678|ref|ZP_20462611.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9506]
gi|433507826|ref|ZP_20464724.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9757]
gi|433512031|ref|ZP_20468846.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
4119]
gi|433514151|ref|ZP_20470935.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63049]
gi|433520574|ref|ZP_20477285.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
65014]
gi|433541756|ref|ZP_20498198.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63006]
gi|7227093|gb|AAF42173.1| putative GTP-binding protein [Neisseria meningitidis MC58]
gi|121051586|emb|CAM07884.1| hypothetical protein NMA0618 [Neisseria meningitidis Z2491]
gi|316984450|gb|EFV63423.1| GTP-dependent nucleic acid-binding protein engD [Neisseria
meningitidis H44/76]
gi|325139656|gb|EGC62195.1| GTP-binding protein EngD [Neisseria meningitidis CU385]
gi|325197660|gb|ADY93116.1| GTP-binding protein EngD [Neisseria meningitidis G2136]
gi|325200898|gb|ADY96353.1| GTP-binding protein EngD [Neisseria meningitidis H44/76]
gi|402336249|gb|EJU71510.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM2657]
gi|432200915|gb|ELK57003.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM422]
gi|432201438|gb|ELK57519.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
87255]
gi|432214178|gb|ELK70084.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63041]
gi|432221333|gb|ELK77144.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M13255]
gi|432225751|gb|ELK81491.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM418]
gi|432239380|gb|ELK94934.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9757]
gi|432239565|gb|ELK95117.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9506]
gi|432245577|gb|ELL01045.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
4119]
gi|432246038|gb|ELL01500.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63049]
gi|432251911|gb|ELL07272.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
65014]
gi|432275708|gb|ELL30776.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63006]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|331700963|ref|YP_004397922.1| GTP-binding protein YchF [Lactobacillus buchneri NRRL B-30929]
gi|329128306|gb|AEB72859.1| GTP-binding protein YchF [Lactobacillus buchneri NRRL B-30929]
Length = 366
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 250/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDKRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLEL +DLD + KR+ K+++ K D ++K AE A LEKI+ L DG
Sbjct: 120 DPLDDIDTINLELGIADLDSVNKRLGKVQRAAKGNDKEAK----AELAVLEKIKPVLEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
RS+ +D E+ +K L LLT KP++YVAN+AE D+ADP ++ + E+ A+ +
Sbjct: 176 GSVRSIDFDDDEQKIVKGLFLLTSKPVLYVANIAEDDMADPENSKYFPEIREFAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ++A E E+ +L +E+ E+L + GV E GL LIR++Y LLGL+T+FT+G KET+A
Sbjct: 236 AIAVAAGPEEEIAQLDDDEKAEFLEAEGVKEPGLNRLIRASYKLLGLQTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + G APQAAG+IHSDFE+GFIRAE +A+DD + AA +E G
Sbjct: 296 WTFKKGTKAPQAAGIIHSDFERGFIRAEVMAFDDLDKLETPAAVKEAG 343
>gi|83644560|ref|YP_432995.1| GTP-dependent nucleic acid-binding protein EngD [Hahella chejuensis
KCTC 2396]
gi|83632603|gb|ABC28570.1| predicted GTPase, probable translation factor [Hahella chejuensis
KCTC 2396]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/380 (49%), Positives = 256/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN GIVA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTQAG-IDAENFPFCTIEPNSGIVAMPDPRLQKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCF D ++VHV KV
Sbjct: 60 PQKVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFADENVVHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIE---KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D+DVIN EL +DLD +E KR+ ++ KG K ++ +++ +EK+ L
Sbjct: 120 DPAADIDVINTELALADLDTVEKGIKRISRIAKGGDKFAKQQIE------VMEKLLPHLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ KP R++ L+ E I++LCLLT+KP +Y+ANVAE + NPH++ V +A
Sbjct: 174 EAKPVRALNLSAEEMLVIRELCLLTVKPTMYIANVAEDGFEN---NPHLDVVRAIAEKEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I ++E+E+ EL EE+ E+LA LG+ E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 AVVVPICNKLESEIAELEDEEKAEFLADLGMEEPGLDRVIRAGYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G TAPQAAGVIHSDFE+GFIRAE V YDDF + A+E G W
Sbjct: 291 RAWTVKIGATAPQAAGVIHSDFERGFIRAEVVGYDDFTSFNGEQGAKEAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L Y + ++ + F++
Sbjct: 344 LEGKDYIVQDGDVIHFRFNV 363
>gi|255066570|ref|ZP_05318425.1| GTP-binding protein YchF [Neisseria sicca ATCC 29256]
gi|255049154|gb|EET44618.1| GTP-binding protein YchF [Neisseria sicca ATCC 29256]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL IEK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASIEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|308050542|ref|YP_003914108.1| GTP-binding protein YchF [Ferrimonas balearica DSM 9799]
gi|307632732|gb|ADN77034.1| GTP-binding protein YchF [Ferrimonas balearica DSM 9799]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 247/348 (70%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPD RL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDARLDALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS GEGLGNKFL++IRE D+I VVRCFE+++IVHV G V
Sbjct: 60 PQRVLPTTMEFVDIAGLVKGASTGEGLGNKFLANIRETDAIGHVVRCFENDNIVHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN EL +D+D +EK +++L K+ K D +K AE LEK+ L G
Sbjct: 120 NPAEDIEVINTELALADMDAVEKALQRLAKRAKGGDKDAK----AEILVLEKVLPTLEQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
ARSV L E+ I+ + LLT+KP +Y+ANV + + NP++++V +A+ +
Sbjct: 176 GMARSVALEPEEKARIQYMGLLTLKPTMYIANVNDDGFEN---NPYLDQVREIAAKENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A++E+E+ EL EERVE++A LG+ E GL +IRS Y LL L+TYFT+G KE +A
Sbjct: 233 VVPVCAEIESEIAELDDEERVEFMADLGIEEPGLNRVIRSGYELLNLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G T PQAAG IH+DFE+G+IRAE +AYDD++A G AA+E G
Sbjct: 293 WTIPVGATGPQAAGKIHTDFERGYIRAEVIAYDDYIALGGENAAKEAG 340
>gi|307544464|ref|YP_003896943.1| translation-associated GTPase [Halomonas elongata DSM 2581]
gi|307216488|emb|CBV41758.1| translation-associated GTPase [Halomonas elongata DSM 2581]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 252/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A NFPFCTIEPNVGIV +PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSG-IDAENFPFCTIEPNVGIVPMPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE +I VVRCF++++++HV+ +V
Sbjct: 60 PQKVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETQAIAHVVRCFDNDNVIHVSNQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP++D++ INLEL +DLD +E+ +++L + K D ++ A KA L++IQ L +G
Sbjct: 120 DPRADIETINLELALADLDTVERAIQRLARVVKGGDKEAI----ATKAILDRIQPHLAEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RS L+D E+ +K LLT+KP +Y+ANV E +NP+++ V +A++ +
Sbjct: 176 QPLRSFGLDDDEKHQLKSFGLLTLKPTMYIANVNEDGFE---NNPYLDTVNEIAAEEGAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + Q+EAE+ EL EER +L +G+ E GL +IR+ Y+LLGL+TYFT+G KE +A
Sbjct: 233 VVPVCNQIEAEIAELDDEERAMFLDEMGMEEPGLDRVIRAGYALLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT++ G TAP+ AGVIH+DF+KGFIRAE VAYDDFVA G A++ G
Sbjct: 293 WTVKIGATAPEGAGVIHTDFQKGFIRAEVVAYDDFVALGGEQGAKDAG 340
>gi|384917313|ref|ZP_10017441.1| putative Predicted GTPase, translation factor [Methylacidiphilum
fumariolicum SolV]
gi|384525346|emb|CCG93314.1| putative Predicted GTPase, translation factor [Methylacidiphilum
fumariolicum SolV]
Length = 366
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/346 (54%), Positives = 254/346 (73%), Gaps = 5/346 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AG+VGLPNVGKSTLFNA+ ++ KA+AAN+PFCTI+PN+GI+AV D RL L+ +SKS
Sbjct: 2 LKAGLVGLPNVGKSTLFNALTKSKKAEAANYPFCTIDPNIGIIAVADERLEELARISKSI 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++E VDIAGLVKGASQGEGLGN+FL+HIREVD+IL ++RCFE ++ H+ G+VDP
Sbjct: 62 KTIPAAIEIVDIAGLVKGASQGEGLGNQFLAHIREVDAILLILRCFEGTEVHHITGRVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D++ EL +D IEK++EK+K K + +K K + + LEK L G P
Sbjct: 122 VEDLDILLTELSLADFSTIEKQLEKVK----KRASAKGKILIDPSLLEKASHFLSKGIPL 177
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQSGRV 295
S+ L+ E + +KQL LLT KPI+ V NV E++L+ NP V++V++ + + V
Sbjct: 178 FSLNLDQQEMNQLKQLSLLTTKPILLVCNVEENELSLGEKNPLVHKVIDYIKTHPFYDYV 237
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
+SAQ+EA+L +L EE+ EYL SLG+ +SG L++ Y LLGLRT+FT+G KET+AWT
Sbjct: 238 ILSAQLEADLNDLDLEEKKEYLQSLGLKDSGCDQLVQKVYKLLGLRTFFTTGPKETRAWT 297
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
I AG TAP+AAGVIHSDFE+GFI AE + ++DFV GS A A+E G
Sbjct: 298 IHAGDTAPKAAGVIHSDFERGFIAAECLRFEDFVLFGSFAKAKEAG 343
>gi|74316408|ref|YP_314148.1| GTP-dependent nucleic acid-binding protein EngD [Thiobacillus
denitrificans ATCC 25259]
gi|74055903|gb|AAZ96343.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 243/350 (69%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPN G+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQAGIA-AENYPFCTIEPNTGVVEVPDPRLDELAKVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF D +++HV GKV
Sbjct: 60 PQRVVPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAICHVVRCFHDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SDV+ I EL +DL EK R EK + K++Q + AAL+ + AL
Sbjct: 120 DPLSDVETIATELALADLASAEKALARYEKPARAGDKEAQHMV------AALKPVVAALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+PAR+ L+ IK LCL+T+KP +YVANV E D NP ++ + A
Sbjct: 174 EGRPARAAGLDAEGLARIKPLCLMTVKPTLYVANVDEDGFHD---NPLLDALTAFAEKEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +EAEL EL EERVEYL LG E GL LIR+ Y+LLGL+TYFT+G KE
Sbjct: 231 APVVPVCAALEAELQELSPEERVEYLNELGWDEPGLNRLIRAAYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T+++DDF+A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQTISFDDFIACQGEQGAKEAG 340
>gi|421547208|ref|ZP_15993246.1| GTP-binding protein EngD [Neisseria meningitidis NM183]
gi|421553413|ref|ZP_15999375.1| GTP-binding protein EngD [Neisseria meningitidis NM576]
gi|421563930|ref|ZP_16009742.1| GTP-binding protein EngD [Neisseria meningitidis NM2795]
gi|421906272|ref|ZP_16336173.1| putative GTP-binding protein YLF2 [Neisseria meningitidis alpha704]
gi|393292619|emb|CCI72092.1| putative GTP-binding protein YLF2 [Neisseria meningitidis alpha704]
gi|402321571|gb|EJU57044.1| GTP-binding protein EngD [Neisseria meningitidis NM183]
gi|402328090|gb|EJU63470.1| GTP-binding protein EngD [Neisseria meningitidis NM576]
gi|402339549|gb|EJU74763.1| GTP-binding protein EngD [Neisseria meningitidis NM2795]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + L +
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELVAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|344199406|ref|YP_004783732.1| GTP-binding protein YchF [Acidithiobacillus ferrivorans SS3]
gi|343774850|gb|AEM47406.1| GTP-binding protein YchF [Acidithiobacillus ferrivorans SS3]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+VAVPDPRL LS + K
Sbjct: 1 MALACGIVGLPNVGKSTLFNAITRAGIA-AENYPFCTIEPNVGLVAVPDPRLEALSAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK A++EFVDIAGLV GA+QGEGLGN+FL+HIRE D+I V RCFED ++VHV+G V
Sbjct: 60 PQKVQHATMEFVDIAGLVAGAAQGEGLGNQFLAHIRETDAIALVTRCFEDPNVVHVSGHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++V+ EL+ +DL +EK R+ + KG KD+ AE AA+ ++ L
Sbjct: 120 DPVADLEVVLTELILADLSTVEKAQARVARQAKGGNKDAV------AEVAAMTRLLPHLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK A S+ LN E++ ++ LCLLTMKP++ +ANVAE++L D P + A++
Sbjct: 174 EGKAAASLNLNSEEQEHLRSLCLLTMKPLMVIANVAENELQD---GPWRAPLEAWAAEQH 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+EL EL EE+ +L LG+ E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 ASVVPVCAAIESELAELEPEEQNAFLQDLGLEEPGLNRIIRAAYHLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIHSDFE+GFIRA+T+AYDDF+ A+E G
Sbjct: 291 RAWTIPVGATAPQAAGVIHSDFERGFIRAQTIAYDDFIQYQGEHGAKEAG 340
>gi|255020867|ref|ZP_05292923.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus ATCC 51756]
gi|340781436|ref|YP_004748043.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus SM-1]
gi|254969658|gb|EET27164.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus ATCC 51756]
gi|340555589|gb|AEK57343.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus SM-1]
Length = 363
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 249/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPD RL L+ + K
Sbjct: 1 MSLACGIVGLPNVGKSTLFNAITKAGIA-AENYPFCTIEPNVGIVEVPDTRLQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VPA++EFVDIAGLV GA+QGEGLGN+FL+HIRE +I V RCF D+++VHV G+V
Sbjct: 60 PQKVVPATMEFVDIAGLVAGAAQGEGLGNQFLAHIRETAAIALVTRCFVDDNVVHVQGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +D+DV+ EL+ +DL +EK ++++K +AK Q++ + AE A L+++ L G+
Sbjct: 120 DPVADLDVVLTELILADLSTVEKAQQRVQK-QAKGGQAEAR--AELALLQRLLPHLDSGQ 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQSG 293
PA S++L + ER + LCLL+ KP++ +ANV E +L D P P + +D +
Sbjct: 177 PASSLSLTEEERQRLVPLCLLSAKPMLVIANVHEDELRDGPWRQP-----LEAWADARGA 231
Query: 294 RVT-ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
RV + A +EAEL ELP E+ E+L LG++E GL +IRS Y LLGL TYFT+GEKE +
Sbjct: 232 RVVPVCAAIEAELAELPPAEQQEFLQDLGLAEPGLNRIIRSAYGLLGLETYFTAGEKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWT G TAPQAAGVIHSDFE+GFIRAE +A++DFV + ARE G
Sbjct: 292 AWTYPKGATAPQAAGVIHSDFERGFIRAEVIAFEDFVHYRGESGAREAG 340
>gi|94265600|ref|ZP_01289344.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
gi|93453879|gb|EAT04237.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
Length = 364
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 256/350 (73%), Gaps = 8/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ G ++AN+PFCTIEPNVG+V VPD RL L+ +++
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAAG-IESANYPFCTIEPNVGMVPVPDHRLDALAAMAR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ V A +EFVDIAGLV GAS+GEGLGN+FL HIR+VD+I VVRCF D++IVHV+ +
Sbjct: 60 TRNKVNAKMEFVDIAGLVSGASRGEGLGNQFLGHIRQVDAIAHVVRCFTDDNIVHVDSGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D +VIN EL+ +DL+ I KR++K + K+ D SK + A LE +++ L G
Sbjct: 120 DPLRDREVINTELILADLETIRKRIQKTANQAKSGDKTSK----QQLAILEAMEKHLDQG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR++ L+D R+ ++++ LL+ KP++YVANV ES++ G NP V ++ A+ Q+
Sbjct: 176 QPARTLELDDGGRELLREIFLLSAKPVLYVANVLESEIN--GGNPWVAKLQEAAAAEQAS 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V IS +E EL+ L ++ER +LA +G++E GL LIR+ Y LLGL T+FT GEKET+A
Sbjct: 234 VVVISGAIEEELSNLETDERQAFLADMGLTEPGLNRLIRTGYQLLGLVTFFTVGEKETRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI AG APQAAGVIHSDFE+GFIRAE ++ DD +A GS A A+EKGL+
Sbjct: 294 WTIAAGSKAPQAAGVIHSDFERGFIRAEVISCDDLLACGSEAKAKEKGLL 343
>gi|393777958|ref|ZP_10366246.1| GTP-dependent nucleic acid-binding protein EngD [Ralstonia sp. PBA]
gi|392715009|gb|EIZ02595.1| GTP-dependent nucleic acid-binding protein EngD [Ralstonia sp. PBA]
Length = 364
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 249/349 (71%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+G+ K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLDALAGIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF D +++HV GK+
Sbjct: 60 PERIVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFADENVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VIN EL +DL +EK +++ AK ++S ++A + A LE+ + L
Sbjct: 120 DPLSDIEVINTELALADLGTVEKTLQR----NAKAAKSGNDKEAARMVAVLERCVEQLNQ 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KP R + L+D ER +K LCL+T KP +YVANV E + NPH++ V A +
Sbjct: 176 AKPVRGMDLSDEERALLKPLCLITAKPAMYVANVKEDGFEN---NPHLDAVRAYADKENA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +EAE+ ++ +++E+L+ +G+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 233 PVVAVCAAIEAEIADMDDADKLEFLSDMGMDEPGLNRVIRAGFRLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWT+ G TAPQAAGVIH+DFE+GFIRA+T+ +DDF+A A+E G
Sbjct: 293 AWTVPIGATAPQAAGVIHTDFERGFIRAQTIGFDDFIAYKGEQGAKEAG 341
>gi|339502109|ref|YP_004689529.1| GTP-dependent nucleic acid-binding protein EngD [Roseobacter
litoralis Och 149]
gi|338756102|gb|AEI92566.1| GTP-dependent nucleic acid-binding protein EngD [Roseobacter
litoralis Och 149]
Length = 365
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/351 (53%), Positives = 248/351 (70%), Gaps = 13/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDVRLDKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVDSI V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDSIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME----KLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230
DP +D + I EL+ +DL+ IEKR++ K++ G + Q + +A K+ALE
Sbjct: 121 DPVADAETIETELMLADLESIEKRLQNIIRKVRGGDKEAVQQQRLMEAAKSALE------ 174
Query: 231 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
DG+PAR + ++ +R + L LLT KP+++V NV E++ A N H +V +A+
Sbjct: 175 -DGRPARVIDVDAEDRKAWNMLQLLTSKPVLFVCNVGEAEAAT--GNAHSAKVAEMAAAQ 231
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V ISAQ+E E+++L +E +L +G+SE+GL LI++ Y LL L TYFT G KE
Sbjct: 232 GNSHVVISAQIEEEISQLEPDEAEMFLDEMGLSEAGLDRLIQAGYKLLHLETYFTVGPKE 291
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAP+AAGVIH DFEKGFIRAET+AYDDFV+ G +AA+E G
Sbjct: 292 ARAWTIPQGTTAPKAAGVIHGDFEKGFIRAETIAYDDFVSLGGESAAKEAG 342
>gi|84685124|ref|ZP_01013023.1| GTP-binding protein YchF [Maritimibacter alkaliphilus HTCC2654]
gi|84666856|gb|EAQ13327.1| GTP-binding protein YchF [Rhodobacterales bacterium HTCC2654]
Length = 365
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 248/348 (71%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDKLAEIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKEIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D I EL+ +D++ IEKR++ + +K + D ++ +E KAA+E AL G
Sbjct: 121 NPVEDAQTIETELMLADMESIEKRLQNIVRKVRGGDKEAVQQERLMKAAME----ALEAG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V ++ + + K L LLT KPI+YV NV E + A+ N H V +A++ +
Sbjct: 177 QPARTVEVDAEDAKAWKMLQLLTTKPILYVCNVGEDEAAE--GNEHSAAVAEMAAEQGAA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++L +EE+ +L LG+ ++GL LI++ Y LL L+TYFT G KE +A
Sbjct: 235 SVVISAKIEEEISQLDAEEQAMFLDELGLEQAGLDRLIKAGYDLLHLQTYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI+ G APQAAGVIH DFE+GFIRAET+AYDD++A G A++ G
Sbjct: 295 WTIKEGTAAPQAAGVIHGDFERGFIRAETIAYDDYIALGGENGAKDAG 342
>gi|317058963|ref|ZP_07923448.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
gi|313684639|gb|EFS21474.1| GTP-binding protein [Fusobacterium sp. 3_1_5R]
Length = 365
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 260/374 (69%), Gaps = 15/374 (4%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ LS + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNALSEIINPQRVV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA+QGEGLGNKFLS+IR +I QVVRCFED ++VHV+G VDP D
Sbjct: 65 AATVEFVDIAGLVKGAAQGEGLGNKFLSNIRSTAAICQVVRCFEDENVVHVDGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+DL+ ++K MEK K K +Q+K+KE E L K + L + ++
Sbjct: 125 IEVINTELIFADLETVDKAMEKHK----KLAQNKIKESVELMTVLPKAKSHLESFQLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ E+ +K LLT+KP+I+ ANVAE DLA+ N +V +V A L S V +S
Sbjct: 181 FDFTEEEKSLLKNYQLLTLKPMIFAANVAEDDLAE--GNAYVEKVREYAKILGSEVVIVS 238
Query: 299 AQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 357
A+VEAEL E+ EE + E+L SLGV E+GL LIR+ + LLGL+TYFT+G KE +AWTI
Sbjct: 239 AKVEAELQEMDDEESKQEFLESLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIH 298
Query: 358 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKY 417
G TAP+AAG IH+DFEKGFIRA+ V+Y+DF+ A+E G++ L +Y
Sbjct: 299 IGDTAPKAAGEIHTDFEKGFIRAKVVSYEDFIQYRGWKGAQEVGVL-------RLEGKEY 351
Query: 418 FHWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 IVQDGDLMEFLFNV 365
>gi|359786965|ref|ZP_09290038.1| GTP-binding protein YchF [Halomonas sp. GFAJ-1]
gi|359295731|gb|EHK59993.1| GTP-binding protein YchF [Halomonas sp. GFAJ-1]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 260/380 (68%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A NFPFCTIEPNVGIV +PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSG-IDAENFPFCTIEPNVGIVPMPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE +I VVRCF++++++HV +V
Sbjct: 60 PQKILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETQAIAHVVRCFDNDNVIHVANQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL---KKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP++D++ IN+EL +DLD +EK ++L KG KD+ A KA L+KIQ L
Sbjct: 120 DPRADIETINIELALADLDTVEKASQRLLRSVKGGDKDAT------ATKAILDKIQPHLA 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+P RS L D E+ +K LT+KP +Y+ANV E D NP+++ V +A++
Sbjct: 174 EGQPLRSFELTDDEKHQVKSFGFLTLKPTMYIANVNEDGFED---NPYLDIVKEIAAEEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + Q+EAE+ EL EER +LA +G+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AVVVPVCNQLEAEIAELEDEERSMFLAEMGMEEPGLDRVIRAGYALLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G +AP+AAGVIH+DF+KGFIRAE +AYDD+V G A++ G W
Sbjct: 291 RAWTVKQGASAPEAAGVIHTDFQKGFIRAEVIAYDDYVTLGGEQGAKDAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 344 LEGKEYIVKDGDVIHFRFNV 363
>gi|325261907|ref|ZP_08128645.1| GTP-binding protein YchF [Clostridium sp. D5]
gi|324033361|gb|EGB94638.1| GTP-binding protein YchF [Clostridium sp. D5]
Length = 365
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 191/349 (54%), Positives = 256/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KIVPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K K A++ +S K E LE+I+ L + K
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTVK-VARNDKSAAK---ELGLLERIKAHLEENKMG 175
Query: 237 RSV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
+S T +D E++ ++ LLT KP+I+ ANV E LAD G SN V V A +
Sbjct: 176 KSFSTDDDDEQEWLESYNLLTRKPVIFAANVTEDVLADDGASNTGVKAVREYAEQEECEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E E+ EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AW
Sbjct: 236 FVVCAQIEQEIAELDDEEKKMFLEDLGLEESGLEKLIKASYHLLGLISYLTAGEPEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFIRAE V+YDD +A G+ AAA+EKGLV
Sbjct: 296 TIKRGTKAPQAAGKIHSDFERGFIRAEIVSYDDLMACGTHAAAKEKGLV 344
>gi|421545159|ref|ZP_15991223.1| putative GTP-binding protein [Neisseria meningitidis NM140]
gi|421548179|ref|ZP_15994207.1| putative GTP-binding protein [Neisseria meningitidis NM2781]
gi|402321236|gb|EJU56711.1| putative GTP-binding protein [Neisseria meningitidis NM140]
gi|402326901|gb|EJU62299.1| putative GTP-binding protein [Neisseria meningitidis NM2781]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMVELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERSMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|256851850|ref|ZP_05557238.1| translation-associated GTPase [Lactobacillus jensenii 27-2-CHN]
gi|260661889|ref|ZP_05862799.1| translation-associated GTPase [Lactobacillus jensenii 115-3-CHN]
gi|297205474|ref|ZP_06922870.1| GTP-binding protein YchF [Lactobacillus jensenii JV-V16]
gi|256615808|gb|EEU20997.1| translation-associated GTPase [Lactobacillus jensenii 27-2-CHN]
gi|260547358|gb|EEX23338.1| translation-associated GTPase [Lactobacillus jensenii 115-3-CHN]
gi|297150052|gb|EFH30349.1| GTP-binding protein YchF [Lactobacillus jensenii JV-V16]
Length = 366
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 245/350 (70%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPDPRL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDPRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAGLVKGAS+GEGLGNKFL +IR+ D+I+ VVR F+D++I V GKV
Sbjct: 60 AKKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP+ D++ INLEL +DLD + +R+ EKL KG KD++++L A L+KI+ L
Sbjct: 120 DPEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAEL------AVLQKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GK RS+ D E+ +K L LLT KP+IYVAN+AE +ADP S+ + V A
Sbjct: 174 EGKAVRSIDFKDDEKKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYFQIVKKHAESEN 233
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G + ISA E E+ L +E+ E+L + GV+ESGL LI++ Y LLGLRT+FT+G ET
Sbjct: 234 AGAIAISAATEEEIAGLDDDEKQEFLEAEGVTESGLDRLIKAAYHLLGLRTFFTAGGPET 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT GM APQ AGVIHSDFE+GFIRAE V++DD S+ +E G
Sbjct: 294 RAWTFHEGMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKYESMQKVKEAG 343
>gi|92118569|ref|YP_578298.1| GTP-dependent nucleic acid-binding protein EngD [Nitrobacter
hamburgensis X14]
gi|91801463|gb|ABE63838.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 365
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 242/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDQLAAVAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SAQIIPTQLTFVDIAGLVRGASKGEGLGNQFLANIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DLD +EKR++ L KK K D ++K + D +E+ + L +G
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDTLSKKAKGNDKEAKEQLD----LVERALKLLREG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP R + E + + L LLT KP++YV NV E A G N V + A+ +
Sbjct: 177 KPTRGMERKPEEERNFRMLGLLTSKPVLYVCNVEEGSAA--GGNAFSQAVFDHATKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EER ++L +LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVAISAKIESEIATLSREERADFLDTLGLEEAGLDRLIRAGYRLLDLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AY D+ A G A AR+ G
Sbjct: 295 WTITRGTKAPAAAGVIHTDFEKGFIRAETIAYADYAALGGEAGARDAG 342
>gi|384549251|ref|YP_005738503.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302332100|gb|ADL22293.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 365
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 260/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ + N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGED-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|227432678|ref|ZP_03914651.1| GTP-binding translation factor YchF [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351560|gb|EEJ41813.1| GTP-binding translation factor YchF [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 366
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 246/348 (70%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDNRLARIQEVVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ IN EL+ +DL+ ++KR K+ + K D +K AE LEKI+ L G
Sbjct: 120 DPLDDIETINTELILADLEAVDKRYSKVARAAKGNDKNAK----AEFVVLEKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K AR++T + E+ +K L LLT KPI+YVAN+AE D+ADP + + N++ A+ +
Sbjct: 176 KSARTITFTEEEQKIVKGLFLLTTKPILYVANLAEDDMADPMGSKYFNQIKEFAAIEGAD 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA E E+ +LP EE+ E+L GV E+GL LIR+ Y LL LRT+FT+G KET+A
Sbjct: 236 VIGLSASEEEEIAQLPEEEKAEFLEMAGVEEAGLNKLIRAAYHLLDLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT AG APQAAGVIHSDFE+GFIRAET+A+ D GS+ +E G
Sbjct: 296 WTFTAGSKAPQAAGVIHSDFERGFIRAETIAFSDLDELGSVKTVKEAG 343
>gi|194290869|ref|YP_002006776.1| gtp-dependent nucleic acid-binding protein engd [Cupriavidus
taiwanensis LMG 19424]
gi|193224704|emb|CAQ70715.1| putative GTP-binding protein with nucleoside triP hydrolase domain,
engD homolog [Cupriavidus taiwanensis LMG 19424]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 247/348 (70%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAKLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED++++HV G+V
Sbjct: 60 PERILPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAITHVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DL +EK + + +K +A D +++ A LEK Q L
Sbjct: 120 DPLSDIEVINTELALADLATVEKALARYVKPARAGDKEAQRL----VAVLEKAQSVLDQA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K R++ L E D+I+ CL+T KP +YVANV E +NPH++ V A S
Sbjct: 176 KAVRTLDLAPEEWDAIRPFCLITAKPTMYVANVREDGF---DNNPHLDAVREYAKQTDSP 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +EAE+ +L ++ E+LA LG+ E GL +IR+ + LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAAIEAEIADLDDADKAEFLADLGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAP+AAGVIH+DFE+GFIRA+T+AYDDF+A A+E G
Sbjct: 293 WTIHVGDTAPKAAGVIHTDFERGFIRAQTIAYDDFIAFKGETGAKEAG 340
>gi|304311479|ref|YP_003811077.1| GTPase, translation factor [gamma proteobacterium HdN1]
gi|301797212|emb|CBL45432.1| Predicted GTPase, probable translation factor [gamma
proteobacterium HdN1]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 191/380 (50%), Positives = 258/380 (67%), Gaps = 20/380 (5%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A A NFPFCTIEPN GIV +PD RL L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AENFPFCTIEPNTGIVPIPDARLDALAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF+D++++HV GK+
Sbjct: 60 PQKVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDDDNVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ IN EL +D+D +EK R+ KL KG K+SQ++ K LEKI L
Sbjct: 120 DPLADIETINTELALADMDSVEKSLHRLSKLAKGGDKESQAR------KEVLEKILPLLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+PAR+ L+ E +K LLT+KP +Y+ANV E + NP ++ V A +
Sbjct: 174 EGRPARAALLSAEELKLVKSQNLLTIKPTMYIANVEEDGFEN---NPLLDRVREFAVNEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S V I A++EAE+ EL ++VE+LA LG+ E GL +IR+ YSLLGL+TYFT+G KE
Sbjct: 231 SIVVPICAKIEAEIAELDDADKVEFLADLGMEEPGLNRVIRAGYSLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT+ G TAPQAA VIH+DFEKGFIRAE V Y+DFVA A++ G W
Sbjct: 291 RAWTVAVGATAPQAAAVIHTDFEKGFIRAEVVGYEDFVAFKGEQGAKDAG--KW-----R 343
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 344 LEGKEYIVKDGDVMHFRFNV 363
>gi|91775028|ref|YP_544784.1| GTP-dependent nucleic acid-binding protein EngD [Methylobacillus
flagellatus KT]
gi|91709015|gb|ABE48943.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
Length = 361
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/346 (54%), Positives = 247/346 (71%), Gaps = 9/346 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G +AAN+PFCTIEPNVGIV VPDPRL L + Q
Sbjct: 1 MKCGIVGLPNVGKSTLFNAITRAG-IEAANYPFCTIEPNVGIVEVPDPRLKPLIEIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D +IVHV GKVDP
Sbjct: 60 KVQPAIVEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDGNIVHVAGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
+DV+ IN EL +D++ +EK +++ KK K+ D ++ A A LEK+QQ L G P
Sbjct: 120 LADVETINTELALADMETVEKTLQRESKKAKSGDKEAI----ALCAVLEKVQQHLDQGHP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
R++ L++ + IK LCL+T+KP++Y+ANV E +NP + +V+ L + V
Sbjct: 176 VRTLGLDEDQLKLIKPLCLITVKPVMYLANVDEEGF---DNNPLLEKVLELGKKESAPVV 232
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E+E+ +L E++ +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 233 AICAKIESEIADLEDEDKAMFLAELGLEEPGLDRVIRAAYDLLGLQTYFTAGVKEVRAWT 292
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
IR G TAPQAAGVIH+DFE+GFIRAE +AYD++V A+E G
Sbjct: 293 IRKGSTAPQAAGVIHTDFERGFIRAEVIAYDEYVKHKGEKGAQEAG 338
>gi|418974276|ref|ZP_13522189.1| GTP-binding protein YchF [Streptococcus oralis SK1074]
gi|383349316|gb|EID27260.1| GTP-binding protein YchF [Streptococcus oralis SK1074]
Length = 371
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|291536605|emb|CBL09717.1| GTP-binding protein YchF [Roseburia intestinalis M50/1]
gi|291541051|emb|CBL14162.1| GTP-binding protein YchF [Roseburia intestinalis XB6B4]
Length = 366
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 256/351 (72%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K E +E +++ L DGK A
Sbjct: 120 ARDIETINLELIFSDIEILDRRISKIAK-QARMDKTLAK---ELELVEAVKKHLEDGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
R+ + D + I K LLT KP IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 176 RTFEVPDDDDAQIWFKGYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMAKEEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL EL +E+ EYL LGV SGL L+ ++YSLLGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELAELDEDEKKEYLEDLGVESSGLDKLVAASYSLLGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLSAAREKGIVG 346
>gi|306828593|ref|ZP_07461787.1| GTP-binding protein YchF [Streptococcus mitis ATCC 6249]
gi|304429201|gb|EFM32287.1| GTP-binding protein YchF [Streptococcus mitis ATCC 6249]
Length = 371
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|421541140|ref|ZP_15987270.1| putative GTP-binding protein [Neisseria meningitidis 93004]
gi|402315933|gb|EJU51487.1| putative GTP-binding protein [Neisseria meningitidis 93004]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDHLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|238021765|ref|ZP_04602191.1| hypothetical protein GCWU000324_01668 [Kingella oralis ATCC 51147]
gi|237866379|gb|EEP67421.1| hypothetical protein GCWU000324_01668 [Kingella oralis ATCC 51147]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 252/349 (72%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMDALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK M L++GK S K DA+K A EK+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAM--LREGKKAKSGDK---DAQKLVALCEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP RS+ L+ +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSLGLDAESLALLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLRELAAKENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +E+E+ EL +E+ E+LA +G+ E+GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAALESEIAELADDEKAEFLAEMGMEEAGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFVA G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVALGGEAKAKEAG 340
>gi|150397466|ref|YP_001327933.1| GTP-dependent nucleic acid-binding protein EngD [Sinorhizobium
medicae WSM419]
gi|150028981|gb|ABR61098.1| GTP-binding protein YchF [Sinorhizobium medicae WSM419]
Length = 367
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 248/353 (70%), Gaps = 15/353 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRRLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDEDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
P D D I EL+ +DL+ +E+R ++ +K GK K+S ++L +E + L
Sbjct: 121 HPVEDADTIETELMLADLESLERRADQTRKRATGKDKESMAQLP------IMEASLKLLQ 174
Query: 232 DGKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
+GKP R++ L+ + D ++ L LLT P++YV NVAESD A N H V +A
Sbjct: 175 EGKPVRTL-LSRLDADELRILQSLNLLTSHPVLYVCNVAESDAAT--GNEHTRAVEKMAQ 231
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ + V ISA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ Y LL L TYFT G
Sbjct: 232 EQGAETVIISAAIESEVAQLPEEEAHEFLAALGLEEAGLDRLIRAGYKLLDLITYFTVGP 291
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KET+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++A G A+E G
Sbjct: 292 KETRAWTIPRGTKAPQAAGVIHSDFERGFIRANTIAYDDYIAYGGENGAKEAG 344
>gi|400291169|ref|ZP_10793196.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
ratti FA-1 = DSM 20564]
gi|399921960|gb|EJN94777.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
ratti FA-1 = DSM 20564]
Length = 371
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/355 (52%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ + KR +++K K KDS ++ K LEKI
Sbjct: 120 DAFVDPIADIETINLELILADLESVNKRYARVEKIARTQKDKDSVAEFK------VLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ + E+ +K L LLT KP++YVANV E +A+P +V ++ N
Sbjct: 174 KPVLEDGKSARTIDFTEDEQKIVKGLFLLTTKPVLYVANVDEDKVANPDDIEYVQQIRNF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEAVVISARAEEEISELDDEDKGEFLEALGLAESGVDKLTRAAYQLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|121634245|ref|YP_974490.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis FAM18]
gi|304388374|ref|ZP_07370485.1| GTP-binding protein YchF [Neisseria meningitidis ATCC 13091]
gi|416164307|ref|ZP_11607187.1| GTP-binding protein EngD [Neisseria meningitidis N1568]
gi|416179622|ref|ZP_11611058.1| GTP-binding protein EngD [Neisseria meningitidis M6190]
gi|416193252|ref|ZP_11617091.1| GTP-binding protein EngD [Neisseria meningitidis ES14902]
gi|421551479|ref|ZP_15997470.1| GTP-binding protein EngD [Neisseria meningitidis 69166]
gi|421559830|ref|ZP_16005698.1| GTP-binding protein EngD [Neisseria meningitidis 92045]
gi|433472239|ref|ZP_20429617.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
68094]
gi|433474162|ref|ZP_20431517.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97021]
gi|433478392|ref|ZP_20435701.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70012]
gi|433481532|ref|ZP_20438799.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2006087]
gi|433484593|ref|ZP_20441812.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2002038]
gi|433485521|ref|ZP_20442724.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97014]
gi|433493195|ref|ZP_20450281.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM586]
gi|433495311|ref|ZP_20452372.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM762]
gi|433497444|ref|ZP_20454472.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7089]
gi|433497999|ref|ZP_20455015.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7124]
gi|433503575|ref|ZP_20460531.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM126]
gi|433510030|ref|ZP_20466887.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
12888]
gi|433526928|ref|ZP_20483550.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
69096]
gi|433537330|ref|ZP_20493826.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
77221]
gi|433539576|ref|ZP_20496043.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70030]
gi|120865951|emb|CAM09688.1| hypothetical protein NMC0379 [Neisseria meningitidis FAM18]
gi|304337640|gb|EFM03798.1| GTP-binding protein YchF [Neisseria meningitidis ATCC 13091]
gi|325127542|gb|EGC50466.1| GTP-binding protein EngD [Neisseria meningitidis N1568]
gi|325131484|gb|EGC54191.1| GTP-binding protein EngD [Neisseria meningitidis M6190]
gi|325137530|gb|EGC60112.1| GTP-binding protein EngD [Neisseria meningitidis ES14902]
gi|402327356|gb|EJU62746.1| GTP-binding protein EngD [Neisseria meningitidis 69166]
gi|402334596|gb|EJU69880.1| GTP-binding protein EngD [Neisseria meningitidis 92045]
gi|432206865|gb|ELK62866.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
68094]
gi|432207915|gb|ELK63901.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97021]
gi|432213286|gb|ELK69208.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70012]
gi|432218289|gb|ELK74152.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2006087]
gi|432219679|gb|ELK75515.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2002038]
gi|432224010|gb|ELK79783.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97014]
gi|432226798|gb|ELK82521.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM586]
gi|432227943|gb|ELK83645.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM762]
gi|432232218|gb|ELK87868.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7089]
gi|432236766|gb|ELK92370.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7124]
gi|432239045|gb|ELK94605.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM126]
gi|432244968|gb|ELL00447.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
12888]
gi|432258981|gb|ELL14261.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
69096]
gi|432271596|gb|ELL26719.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70030]
gi|432271753|gb|ELL26875.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
77221]
Length = 363
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|171462965|ref|YP_001797078.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192503|gb|ACB43464.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 364
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/347 (53%), Positives = 248/347 (71%), Gaps = 6/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P +VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GK+
Sbjct: 60 SERILPTAVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDPNVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +D+ VI+ EL SDL +EK + + KA S + + A A L K+Q L
Sbjct: 120 DPIADIGVIDTELALSDLATVEKTLN--RSSKAAKSGNDKEAAALVAVLTKVQAHLDSAL 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RS+ L+D E+ IK LCL+T KP +YVANV E ++ N H+ V A+ ++
Sbjct: 178 PVRSLNLSDDEKLLIKPLCLITAKPAMYVANVKEGGFSN---NSHLEAVKQHAAKERAPV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + A +EAE+ +L +++E+LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +AW
Sbjct: 235 IAVCAAIEAEIADLEEADKIEFLADLGMEEPGLDRVIRAGYALLGLQTYFTAGVKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI G TAPQAAGVIH+DFE+GFIRA+T++YDDFV A A+E G
Sbjct: 295 TIHQGDTAPQAAGVIHADFERGFIRAQTISYDDFVQFKGEAGAKEAG 341
>gi|126463250|ref|YP_001044364.1| GTP-dependent nucleic acid-binding protein EngD [Rhodobacter
sphaeroides ATCC 17029]
gi|126104914|gb|ABN77592.1| GTP-binding protein YchF [Rhodobacter sphaeroides ATCC 17029]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 244/349 (69%), Gaps = 9/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL +L+ ++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLEILAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IRE D+I V+RCFED DI HV G++
Sbjct: 61 SKQIIPTRMTFVDIAGLVRGASKGEGLGNQFLANIRECDAIAHVLRCFEDGDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD- 232
DP +D + I EL+ +D+D IE+R+ L +K K D KE A++ L ++ A ++
Sbjct: 121 DPVADAETIETELMLADMDSIERRLANLARKLKGGD-----KEAADQDRLLRVAMAALEA 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G+PARSVT++ ++ + + L LLT KP++YV NV E+ A N V +A +
Sbjct: 176 GRPARSVTVSADDQRAWRMLQLLTSKPVLYVCNVEEASAAK--GNSQSARVAEMARAQGA 233
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISA++E E+ +LP EE +L +G+ E+GL LIR+ Y LLGL+TYFT G KE +
Sbjct: 234 ATVVISARIEEEIAQLPPEEAGMFLEEMGLEEAGLDRLIRAGYELLGLQTYFTVGPKEAR 293
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI GM APQAAGVIH DFEKGFIRAETVAY D+VA A A+E G
Sbjct: 294 AWTITRGMLAPQAAGVIHGDFEKGFIRAETVAYADYVAGRGEAGAKESG 342
>gi|337266798|ref|YP_004610853.1| GTP-binding protein YchF [Mesorhizobium opportunistum WSM2075]
gi|336027108|gb|AEH86759.1| GTP-binding protein YchF [Mesorhizobium opportunistum WSM2075]
Length = 367
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 247/352 (70%), Gaps = 13/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPRL ++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLGKIAAIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + + EL+ +DLD +E+R+ ++ K+ KD ++ +AALE +Q G
Sbjct: 121 DPVADAETVETELMLADLDSLERRIVQIRKRASTKDKEATTVLPMMEAALELLQA----G 176
Query: 234 KPAR----SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
KP R ++ D ++ L LLT P++YV NVAE+D A N H V +A+
Sbjct: 177 KPTRILLKGISAEDLR--ILQGLNLLTSHPVLYVCNVAEADAAT--GNEHTRAVEKMATA 232
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+G V ISA +EAE+ +L EE +E+L+SLG+ E GL +IR+ Y LL L TYFT G K
Sbjct: 233 QGAGTVVISAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPK 292
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWTI G APQAAGVIH+DFE+GFIRA+T+AY+DFVA G AA+E G
Sbjct: 293 ETRAWTIHKGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVALGGEVAAKEAG 344
>gi|115523458|ref|YP_780369.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris BisA53]
gi|115517405|gb|ABJ05389.1| GTP-binding protein YchF [Rhodopseudomonas palustris BisA53]
Length = 387
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 195/372 (52%), Positives = 251/372 (67%), Gaps = 11/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ K
Sbjct: 23 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAAAGK 82
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED+DI HV+GK+
Sbjct: 83 SAQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDSDITHVDGKI 142
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DLD +EKR++ L KK K D +K + D AL L +G
Sbjct: 143 APINDIETIETELMLADLDSLEKRVDNLTKKAKGNDKDAKEQLDLVNRAL----VLLREG 198
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR + E + L LLT KP++YV NV E A+ N VM A + +
Sbjct: 199 RPARFLERKHEEERAFAMLGLLTSKPVLYVCNVEEGSAAE--GNSFSQAVMARAKEEDAV 256
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KET+A
Sbjct: 257 AVVISAKIESEIATLSREERVDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKETRA 316
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WTI G APQAA VIHSDFEKGFIRAET+AY+D++ G A AR+ G + L E++
Sbjct: 317 WTITKGTKAPQAAAVIHSDFEKGFIRAETIAYEDYITLGGEAGARDGGKLR-LEGKEYIV 375
Query: 414 S---YKYFHWNS 422
+ +F +N+
Sbjct: 376 ADGDVMHFRFNT 387
>gi|449127074|ref|ZP_21763348.1| GTP-binding protein YchF [Treponema denticola SP33]
gi|448944742|gb|EMB25619.1| GTP-binding protein YchF [Treponema denticola SP33]
Length = 368
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 248/348 (71%), Gaps = 4/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M++ GIVGLPNVGKST+F+A+ + A+AAN+PFCTI PNVGIV++PD RL L+
Sbjct: 1 MAINCGIVGLPNVGKSTIFSALT-SAPAEAANYPFCTINPNVGIVSLPDARLKKLAEHFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +PA+VEFVDIAGLVKGAS+GEGLGN+FLSHIREV I VVRCF+++DIVHV+GK+
Sbjct: 60 PKKVIPATVEFVDIAGLVKGASKGEGLGNQFLSHIREVGVIAHVVRCFDNDDIVHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD++ IN+EL +DL ++KR E+ +K +++ + A+EKI+ L +GK
Sbjct: 120 DPASDIETINIELALADLASLDKRAERAEKATRMGKEAQKEAAVVMRAIEKIRPLLQEGK 179
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR L D ERD+I L+TMKP +YV NV E+ D SNP++ V +A +
Sbjct: 180 GARLADLTDDERDAIYDTHLITMKPQMYVCNVDETGAQD--SNPYIAAVKKIAESEGADT 237
Query: 295 VTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I + EAEL +L S EER+ +LA +G+ ESGL L R+ Y L+GLRT+FT+GE E +A
Sbjct: 238 VVICGKFEAELADLESEEERLSFLAEVGLEESGLSQLARAAYHLIGLRTFFTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI AG TAP+AAGVIH+DFEKGFI+AE ++DDFV GS +E G
Sbjct: 298 WTIHAGDTAPKAAGVIHTDFEKGFIKAEVYSFDDFVKYGSEQKIKEAG 345
>gi|298370329|ref|ZP_06981645.1| GTP-binding protein YchF [Neisseria sp. oral taxon 014 str. F0314]
gi|340361741|ref|ZP_08684155.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria macacae
ATCC 33926]
gi|298281789|gb|EFI23278.1| GTP-binding protein YchF [Neisseria sp. oral taxon 014 str. F0314]
gi|339888161|gb|EGQ77637.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria macacae
ATCC 33926]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|294668557|ref|ZP_06733654.1| GTP-binding protein YchF [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291309520|gb|EFE50763.1| GTP-binding protein YchF [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIAREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DFVA G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVALGGEAKAKEAG 340
>gi|110801535|ref|YP_699149.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
perfringens SM101]
gi|110682036|gb|ABG85406.1| GTP-binding protein YchF [Clostridium perfringens SM101]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 251/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKIYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDENVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+F+DLD +E+RMEK +K ++ D +K + D +E+++ L KP
Sbjct: 120 IRDIETINLELIFADLDVLERRMEKTMKLVRSGDKTAKFEYD----VMERLKAHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
AR++ + E +K L L+T KP++Y N++E D+ + N +V +V A SG
Sbjct: 176 ARTLEATEDEEAFVKSLFLITSKPVLYACNISEDDMMEGNLDNEYVKKVRAYAETENSGI 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + A++E EL+ L EE+ E L+ G+ ESGL LI+++Y LLGL +Y T+G +E +AW
Sbjct: 236 MVVCAKLEEELSGLDEEEKAEMLSEYGLEESGLDKLIQASYKLLGLMSYLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI+ G APQAAG IHSD E+GFIRAE V+YDD V GS AAA+EKG+
Sbjct: 296 TIKQGTKAPQAAGKIHSDIERGFIRAEVVSYDDLVECGSEAAAKEKGV 343
>gi|86136049|ref|ZP_01054628.1| GTP-binding protein YchF [Roseobacter sp. MED193]
gi|85826923|gb|EAQ47119.1| GTP-binding protein YchF [Roseobacter sp. MED193]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 244/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDSRLDKLAAIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I EL+ +DL+ IEKR L +K K D +++ +E L + Q L +G
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKEAQQQE----RLLAQAQAMLEEG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++D + + K L LL+ KP++YV NV ES+ A+ N H +V +A+ +
Sbjct: 177 KPARLVEVDDEDAKAWKVLQLLSTKPVLYVCNVGESESAE--GNAHSAKVAEMAAAQGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L +EE +L +G+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVVISAQIEEEISQLEAEEAQMFLEEMGLEEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G + PQAAGVIH DFEKGFIRAET+AY+DF+A A+E G
Sbjct: 295 WTIRQGTSGPQAAGVIHGDFEKGFIRAETIAYEDFIACNGEQGAKEAG 342
>gi|18310848|ref|NP_562782.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
perfringens str. 13]
gi|110799604|ref|YP_696549.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
perfringens ATCC 13124]
gi|168206080|ref|ZP_02632085.1| GTP-binding protein YchF [Clostridium perfringens E str. JGS1987]
gi|168210771|ref|ZP_02636396.1| GTP-binding protein YchF [Clostridium perfringens B str. ATCC 3626]
gi|168215225|ref|ZP_02640850.1| GTP-binding protein YchF [Clostridium perfringens CPE str. F4969]
gi|168215495|ref|ZP_02641120.1| GTP-binding protein YchF [Clostridium perfringens NCTC 8239]
gi|169343656|ref|ZP_02864655.1| GTP-binding protein YchF [Clostridium perfringens C str. JGS1495]
gi|182626156|ref|ZP_02953916.1| GTP-binding protein YchF [Clostridium perfringens D str. JGS1721]
gi|422346535|ref|ZP_16427449.1| GTP-binding protein YchF [Clostridium perfringens WAL-14572]
gi|422874786|ref|ZP_16921271.1| GTP-binding protein YchF [Clostridium perfringens F262]
gi|18145530|dbj|BAB81572.1| probable GTP-binding protein [Clostridium perfringens str. 13]
gi|110674251|gb|ABG83238.1| GTP-binding protein YchF [Clostridium perfringens ATCC 13124]
gi|169298216|gb|EDS80306.1| GTP-binding protein YchF [Clostridium perfringens C str. JGS1495]
gi|170662398|gb|EDT15081.1| GTP-binding protein YchF [Clostridium perfringens E str. JGS1987]
gi|170711164|gb|EDT23346.1| GTP-binding protein YchF [Clostridium perfringens B str. ATCC 3626]
gi|170713377|gb|EDT25559.1| GTP-binding protein YchF [Clostridium perfringens CPE str. F4969]
gi|177908593|gb|EDT71118.1| GTP-binding protein YchF [Clostridium perfringens D str. JGS1721]
gi|182382129|gb|EDT79608.1| GTP-binding protein YchF [Clostridium perfringens NCTC 8239]
gi|373226080|gb|EHP48407.1| GTP-binding protein YchF [Clostridium perfringens WAL-14572]
gi|380304427|gb|EIA16716.1| GTP-binding protein YchF [Clostridium perfringens F262]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 251/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKIYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDENVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+F+DLD +E+RMEK +K ++ D +K + D +E+++ L KP
Sbjct: 120 IRDIETINLELIFADLDVLERRMEKTMKLVRSGDKTAKFEYD----VMERLKAHLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
AR++ + E +K L L+T KP++Y N++E D+ + N +V +V A SG
Sbjct: 176 ARTLEATEDEEAFVKSLFLITSKPVLYACNISEDDMMEGNLDNEYVQKVRAYAETENSGI 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + A++E EL+ L EE+ E L+ G+ ESGL LI+++Y LLGL +Y T+G +E +AW
Sbjct: 236 MVVCAKLEEELSGLDEEEKAEMLSEYGLEESGLDKLIQASYKLLGLMSYLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI+ G APQAAG IHSD E+GFIRAE V+YDD V GS AAA+EKG+
Sbjct: 296 TIKQGTKAPQAAGKIHSDIERGFIRAEVVSYDDLVECGSEAAAKEKGV 343
>gi|392405668|ref|YP_006442280.1| GTP-binding protein YchF [Turneriella parva DSM 21527]
gi|390613622|gb|AFM14774.1| GTP-binding protein YchF [Turneriella parva DSM 21527]
Length = 378
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/371 (49%), Positives = 255/371 (68%), Gaps = 9/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKST+FNA+ ++ A+A N+PFCTI+PNVG+VAVPDPR L + +
Sbjct: 12 MPLQCGIVGLPNVGKSTIFNALTKSHSAEAQNYPFCTIDPNVGVVAVPDPRFDYLVKIVE 71
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ +VP +VEFVDIAGLVKGASQGEGLGNKFL HIR+V++IL VVRCF+D ++ HV+G V
Sbjct: 72 PKSSVPVAVEFVDIAGLVKGASQGEGLGNKFLDHIRKVNAILHVVRCFQDENVTHVSGAV 131
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAA-LEKIQQALMD 232
PKSDV++I LEL+ SDLDQ++KR++ LKK K+ D KE E++A LE++ + L
Sbjct: 132 SPKSDVEIIELELILSDLDQVDKRLQNLLKKKKSGD-----KEAVEQSAVLERVAETLKA 186
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPA + L+ +R++IK L LL++KP++++ N+ E LA P +P E+ +A + +
Sbjct: 187 GKPASAAGLSADDREAIKDLALLSLKPVLFIGNIDEKLLAHPEESPEFRELQQVAKERGA 246
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
+ +S ++EAE+ +L EE E+L+ LG+SE GL +IR Y LLG T+FT+GE E +
Sbjct: 247 EAIPLSGKIEAEIGQLSPEEEKEFLSDLGLSEPGLNRVIREAYGLLGYITFFTAGEVEVR 306
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG--LVSWLHYHE 410
AW I G TAPQAAG IHSD E+GFIRAE + G+ A+E G + Y
Sbjct: 307 AWNIVKGETAPQAAGTIHSDIERGFIRAEVTPFSAVEEYGTQKKAQEAGKMRLEGKEYVM 366
Query: 411 HLASYKYFHWN 421
YF +N
Sbjct: 367 QDGDVVYFRFN 377
>gi|188586450|ref|YP_001917995.1| GTP-binding protein YchF [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351137|gb|ACB85407.1| GTP-binding protein YchF [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 250/350 (71%), Gaps = 11/350 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A +ANFPFCTI+PN+G+V VPD RL L+ L +
Sbjct: 1 MQIGIVGLPNVGKSTLFNAITQAG-ADSANFPFCTIDPNIGVVDVPDGRLEKLTELVNPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE DI HV+G +DP
Sbjct: 60 KTTPTAIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFESQDITHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
D++ INLELVFSDL+ +E+R+ EKL K K+ Q E L+++Q+ L +G
Sbjct: 120 IRDIETINLELVFSDLELVERRIEKTEKLMKSGGKEYQK------EHNLLKRLQETLSEG 173
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ ARS+T + E++ +K + LL+ KPI+YVANV E DL SN V +V A + S
Sbjct: 174 RSARSLTFTNEEKEILKSMPLLSTKPILYVANVGEEDLIGD-SNDLVKQVEEYAREEGSE 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A +E+E+ EL +E+ E+L +G+ E GL +I++ Y LLGL T+FT+GEKE +A
Sbjct: 233 VIKVCASIESEIAELDDDEKDEFLNEIGLEEPGLNRVIKAGYKLLGLITFFTAGEKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT++ G TAPQAAG IHSD E+GFIRAE + +DD + S A ARE G++
Sbjct: 293 WTVKEGATAPQAAGKIHSDLERGFIRAEVITFDDILKYESYAKARENGVL 342
>gi|408411187|ref|ZP_11182363.1| Predicted GTPase, probable translation factor [Lactobacillus sp.
66c]
gi|409350893|ref|ZP_11233843.1| Predicted GTPase, probable translation factor [Lactobacillus
equicursoris CIP 110162]
gi|407874641|emb|CCK84169.1| Predicted GTPase, probable translation factor [Lactobacillus sp.
66c]
gi|407877102|emb|CCK85901.1| Predicted GTPase, probable translation factor [Lactobacillus
equicursoris CIP 110162]
Length = 366
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 6/350 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDKRLARIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAGLVKGAS+GEGLGNKFL +IR+ D+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKVVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFDDDNITSVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALMDG 233
DP+ D++ INLELV++DLD +++R+ K++K +Q K KE AE A LEKI+ L G
Sbjct: 120 DPEEDINTINLELVYADLDSVDRRISKVQKM----AQQKDKEAMAEYAVLEKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P RS+ D E +K L LLT KP+IYVAN+AE +ADP ++ + V A +G
Sbjct: 176 DPVRSIKFTDDEAKIVKGLFLLTSKPVIYVANIAEESMADPEADKYYQIVKAHADKEGAG 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA +E E+ L EE+ E LA+ GV ESGL LIR+ Y LLGLRT+FT+G KET+A
Sbjct: 236 CLGISAAIEEEIAGLDDEEKAEMLAAEGVEESGLDRLIRAAYHLLGLRTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WT + GM APQ AG+IHSDFE+GFIRAE V++DD ++ +E G V
Sbjct: 296 WTFKQGMKAPQVAGIIHSDFERGFIRAEVVSFDDLDKYETMQKIKEAGRV 345
>gi|296111120|ref|YP_003621501.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
gi|339491662|ref|YP_004706167.1| GTP-binding protein [Leuconostoc sp. C2]
gi|295832651|gb|ADG40532.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
gi|338853334|gb|AEJ31544.1| GTP-binding protein [Leuconostoc sp. C2]
Length = 366
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 248/347 (71%), Gaps = 4/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIIHVVRAFDGDDIIHVNGIV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D+D IN EL+ +DL+ I+KR K+ + ++ AE + LEKI+ AL GK
Sbjct: 120 NPLDDIDTINTELILADLETIDKRYSKVARAAKGADKAAK---AEFSVLEKIKPALEAGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R++ D E+ +K L LLT KP++YVAN+AE D+ADP ++ + N++ A+ +
Sbjct: 177 SVRTLDFTDEEQKIVKGLFLLTTKPVLYVANLAEDDMADPEASKYFNDIKTFAATEGAEV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ +SA E E+ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+AW
Sbjct: 237 IGLSASAEEEIAQLADEDKAEFLEMAGVTEPGLNKLIRAAYHLLNLRTFFTAGGKETRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T ++GM APQAAGVIHSDFE+GFIRAET+A+DD GS+ A +E G
Sbjct: 297 TFKSGMKAPQAAGVIHSDFERGFIRAETIAFDDLDRLGSVKAVKEAG 343
>gi|452992699|emb|CCQ95860.1| putative GTPase with RNA binding site [Clostridium ultunense Esp]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 247/347 (71%), Gaps = 5/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + KA+A N+PFCTIEPN+GIV+VPD RL +L+ L K +
Sbjct: 1 MKLGIVGLPNVGKSTLFNALT-SAKAEAENYPFCTIEPNIGIVSVPDKRLDILANLVKPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED ++ HV GK+ P
Sbjct: 60 KIVPATIEFFDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDENVTHVEGKISP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+++INLEL+ SDL+ I R+ K++K D + E L+ ++ ++ +P
Sbjct: 120 VDDIEIINLELMLSDLEIINNRLHKVEKLVKGDKTY----NKELELLKILKDSIEKEQPL 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
RS+ +D E +K LL++KP++YV N++E DL N +V V A + S +
Sbjct: 176 RSIDFSDEETILLKNFNLLSLKPVLYVCNISEEDLLQGEDNEYVRSVRKYAFEENSEVIV 235
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
+SA++E+E+++L EE+ E+LA LG+ ESGL LI ++Y LLGL ++ TSG KE +AWTI
Sbjct: 236 VSAKIESEISQLNREEKKEFLAELGLEESGLDKLINASYDLLGLMSFLTSGPKEVRAWTI 295
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+ G AP+AAG IHSD E+GFIRAE V Y D + G A A+EKGLV
Sbjct: 296 KKGTKAPEAAGKIHSDIERGFIRAEVVNYKDLIECGGTAQAKEKGLV 342
>gi|314935010|ref|ZP_07842369.1| GTP-binding protein YchF [Staphylococcus caprae C87]
gi|313652940|gb|EFS16703.1| GTP-binding protein YchF [Staphylococcus caprae C87]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 258/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLFKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ ++KR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVDKRLPKIEKMARQKDKTAEM----ELRILTRIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAEKEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKKMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT R GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFRQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVEHGGENGAKEAG-------KQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMKDGDIVHFRFNV 365
>gi|254673163|emb|CBA08008.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVG+V VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGVVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APIVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|77464409|ref|YP_353913.1| GTP-dependent nucleic acid-binding protein EngD [Rhodobacter
sphaeroides 2.4.1]
gi|332559299|ref|ZP_08413621.1| GTP-binding protein YchF [Rhodobacter sphaeroides WS8N]
gi|77388827|gb|ABA80012.1| Putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1]
gi|332277011|gb|EGJ22326.1| GTP-binding protein YchF [Rhodobacter sphaeroides WS8N]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 244/349 (69%), Gaps = 9/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL +L+ ++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLEILAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IRE D+I V+RCFED DI HV G++
Sbjct: 61 SKQIIPTRMTFVDIAGLVRGASKGEGLGNQFLANIRECDAIAHVLRCFEDGDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD- 232
DP +D + I EL+ +D+D IE+R+ L +K K D KE A++ L ++ A ++
Sbjct: 121 DPVADAETIETELMLADMDSIERRLANLARKLKGGD-----KEAADQDRLLRVAMAALEA 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G+PARSVT++ ++ + + L LLT KP++YV NV E+ A N V +A +
Sbjct: 176 GRPARSVTVSADDQRAWRMLQLLTSKPVLYVCNVEEASAAK--GNSQSARVAEMARAQGA 233
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISA++E E+ +LP EE +L +G+ E+GL LIR+ Y LLGL+TYFT G KE +
Sbjct: 234 ATVVISARIEEEIAQLPPEEAGMFLEEMGLEEAGLDRLIRAGYELLGLQTYFTVGPKEAR 293
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI GM APQAAGVIH DFEKGFIRAETVAY D+VA A A+E G
Sbjct: 294 AWTITRGMLAPQAAGVIHGDFEKGFIRAETVAYADYVAGRGEAGAKEAG 342
>gi|419798586|ref|ZP_14323988.1| GTP-binding protein YchF [Neisseria sicca VK64]
gi|385694265|gb|EIG24877.1| GTP-binding protein YchF [Neisseria sicca VK64]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAGKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|385330445|ref|YP_005884396.1| translation-associated GTPase [Marinobacter adhaerens HP15]
gi|311693595|gb|ADP96468.1| translation-associated GTPase [Marinobacter adhaerens HP15]
Length = 363
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/378 (48%), Positives = 262/378 (69%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A NFPFCTIEPN G+VA+PDPRL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIG-AENFPFCTIEPNAGVVAMPDPRLNKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCFED +++HV KV
Sbjct: 60 PERVVPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFEDGNVIHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DL+ +EK ++++++ K+ D ++K A+ EK+ L +G
Sbjct: 120 DPASDIEVINTELALADLETVEKAIKRVQRVAKSGDKEAK----AQLEMFEKLLPVLNEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ L+ + I++LCLLT+KP +Y+ANV+E + NPH++ V +A +
Sbjct: 176 KPVRSMNLDKDQMALIRELCLLTVKPTMYIANVSEDGFEN---NPHLDTVRKIAESENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++EAE++EL +E+ +L +G+ E GL +IR Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPICNKIEAEISELEDDEKSMFLEEMGMEEPGLDRVIRGGYGLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAGVIH+DFE+GFIRAE V+YDDFV A A++ G W L
Sbjct: 293 WTVKIGATAPQAAGVIHTDFERGFIRAEVVSYDDFVQYNGEAGAKDAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 346 GKEYIVKDGDVIHFRFNV 363
>gi|357636677|ref|ZP_09134552.1| GTP-binding protein YchF [Streptococcus macacae NCTC 11558]
gi|357585131|gb|EHJ52334.1| GTP-binding protein YchF [Streptococcus macacae NCTC 11558]
Length = 371
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 252/355 (70%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIIHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
+DP +D++ INLEL+ SDL+ I KR +++K K KDS ++ K LEKI
Sbjct: 120 SKFIDPIADIETINLELILSDLESINKRYARVEKIARTQKDKDSIAEFK------VLEKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ E+ +K L LLT KP++YVANV E +ADP S +V ++ +
Sbjct: 174 KPVLEDGKSARTIEFTKDEKKIVKGLFLLTTKPVLYVANVDEDKVADPDSIAYVQQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ ++L +G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKTDFLEVMGLNESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A RE G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVREAG 348
>gi|372281935|ref|ZP_09517971.1| GTP-binding protein YchF [Oceanicola sp. S124]
Length = 365
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 246/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+G++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVNVPDRRLDTLAGIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +PA + FVDIAGLVKGASQGEGLGN+FL++IRE D+I V+RCFED DI HV+G+V
Sbjct: 61 SKQIIPARMTFVDIAGLVKGASQGEGLGNQFLANIRETDAIAHVLRCFEDGDITHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D +VI EL+ SDL+ IEKR L +K K D +++ ++ AA ++ DG
Sbjct: 121 DPVADAEVIETELMLSDLESIEKRRANLVRKLKGNDKEAQQQDRLLAAAQAALE----DG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR+V ++ + + K L LLT KP+++V NV E D A N V +A++ +G
Sbjct: 177 KPARTVEVDAEDLKAWKMLQLLTSKPVLFVCNVNEEDAAK--GNDFSAAVEKMAAEQGAG 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++L +EE +L +G+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 TVLISARIEEEISQLDAEEAEMFLGEMGLEEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI+ G APQAAGVIH DFEKGFIRAET+AYDD+VA + A+E G
Sbjct: 295 WTIKQGTMAPQAAGVIHGDFEKGFIRAETIAYDDYVACNGESGAKEAG 342
>gi|329116224|ref|ZP_08244941.1| GTP-binding protein YchF [Streptococcus parauberis NCFD 2020]
gi|333904254|ref|YP_004478125.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parauberis KCTC 11537]
gi|326906629|gb|EGE53543.1| GTP-binding protein YchF [Streptococcus parauberis NCFD 2020]
gi|333119519|gb|AEF24453.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parauberis KCTC 11537]
gi|456369929|gb|EMF48829.1| GTP-binding and nucleic acid-binding protein [Streptococcus
parauberis KRS-02109]
gi|457093934|gb|EMG24489.1| GTP-binding and nucleic acid-binding protein [Streptococcus
parauberis KRS-02083]
Length = 371
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLDKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DLD I KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLDSINKRYARVEKMARTQKDKESL----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ N+ E +K L LLT KP++YVANV E+ +ADP +V ++ A
Sbjct: 176 VLEDGKSARTIEFNEEEAKVVKGLFLLTTKPVLYVANVDENRVADPDDIDYVKQIREFAE 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD +A GS A +E G
Sbjct: 296 KEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMAYGSEKAVKEAG 348
>gi|27469293|ref|NP_765930.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis ATCC 12228]
gi|57865980|ref|YP_187641.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis RP62A]
gi|251811316|ref|ZP_04825789.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282874669|ref|ZP_06283551.1| GTP-binding protein YchF [Staphylococcus epidermidis SK135]
gi|293367629|ref|ZP_06614281.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417647607|ref|ZP_12297442.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU144]
gi|417657512|ref|ZP_12307173.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU028]
gi|417659148|ref|ZP_12308758.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU045]
gi|417909582|ref|ZP_12553318.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU037]
gi|417913028|ref|ZP_12556704.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU109]
gi|418412847|ref|ZP_12986098.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis BVS058A4]
gi|418607218|ref|ZP_13170468.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU057]
gi|418609075|ref|ZP_13172243.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU065]
gi|418612321|ref|ZP_13175365.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU117]
gi|418618443|ref|ZP_13181314.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU120]
gi|418622210|ref|ZP_13184965.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU123]
gi|418624234|ref|ZP_13186911.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU125]
gi|418626612|ref|ZP_13189210.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU126]
gi|418628121|ref|ZP_13190680.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU127]
gi|418634931|ref|ZP_13197322.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU129]
gi|418664470|ref|ZP_13225944.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU081]
gi|419769651|ref|ZP_14295744.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-250]
gi|419770823|ref|ZP_14296889.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-K]
gi|420163689|ref|ZP_14670431.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM095]
gi|420166112|ref|ZP_14672800.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM088]
gi|420168068|ref|ZP_14674719.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM087]
gi|420170912|ref|ZP_14677467.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM070]
gi|420172942|ref|ZP_14679439.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM067]
gi|420185070|ref|ZP_14691169.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM040]
gi|420188925|ref|ZP_14694924.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM039]
gi|420190602|ref|ZP_14696543.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM037]
gi|420196180|ref|ZP_14701957.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM021]
gi|420197552|ref|ZP_14703275.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM020]
gi|420200090|ref|ZP_14705752.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM031]
gi|420202929|ref|ZP_14708516.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM018]
gi|420205758|ref|ZP_14711281.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM015]
gi|420207828|ref|ZP_14713314.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM008]
gi|420209581|ref|ZP_14715017.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM003]
gi|420211528|ref|ZP_14716887.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM001]
gi|420214887|ref|ZP_14720162.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05005]
gi|420216018|ref|ZP_14721241.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05001]
gi|420222727|ref|ZP_14727642.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH08001]
gi|420224686|ref|ZP_14729525.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH06004]
gi|420227692|ref|ZP_14732456.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05003]
gi|420230745|ref|ZP_14735424.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04003]
gi|420235773|ref|ZP_14740309.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051475]
gi|421608583|ref|ZP_16049799.1| GTP-binding protein YchF [Staphylococcus epidermidis AU12-03]
gi|27316843|gb|AAO06018.1|AE016752_51 GTP-binding protein [Staphylococcus epidermidis ATCC 12228]
gi|57636638|gb|AAW53426.1| conserved hypothetical protein TIGR00092 [Staphylococcus
epidermidis RP62A]
gi|251805183|gb|EES57840.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281296593|gb|EFA89105.1| GTP-binding protein YchF [Staphylococcus epidermidis SK135]
gi|291318199|gb|EFE58593.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329723884|gb|EGG60411.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU144]
gi|329734375|gb|EGG70689.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU028]
gi|329736076|gb|EGG72349.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU045]
gi|341652886|gb|EGS76661.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU037]
gi|341656862|gb|EGS80566.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU109]
gi|374405712|gb|EHQ76631.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU057]
gi|374408948|gb|EHQ79753.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU065]
gi|374410458|gb|EHQ81210.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU081]
gi|374815941|gb|EHR80162.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU120]
gi|374819623|gb|EHR83743.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU117]
gi|374827184|gb|EHR91049.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU123]
gi|374827958|gb|EHR91808.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU125]
gi|374831682|gb|EHR95419.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU126]
gi|374836473|gb|EHS00061.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU129]
gi|374838880|gb|EHS02414.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU127]
gi|383357959|gb|EID35421.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-250]
gi|383362650|gb|EID39997.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-K]
gi|394233978|gb|EJD79567.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM095]
gi|394234167|gb|EJD79752.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM088]
gi|394237462|gb|EJD82952.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM087]
gi|394239282|gb|EJD84727.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM070]
gi|394241208|gb|EJD86626.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM067]
gi|394253737|gb|EJD98732.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM039]
gi|394255452|gb|EJE00402.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM040]
gi|394258535|gb|EJE03415.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM037]
gi|394262055|gb|EJE06838.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM021]
gi|394265653|gb|EJE10304.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM020]
gi|394268948|gb|EJE13495.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM018]
gi|394269443|gb|EJE13977.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM015]
gi|394270139|gb|EJE14660.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM031]
gi|394275061|gb|EJE19453.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM008]
gi|394278478|gb|EJE22793.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM003]
gi|394280863|gb|EJE25134.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM001]
gi|394283015|gb|EJE27195.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05005]
gi|394288681|gb|EJE32585.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH08001]
gi|394292717|gb|EJE36456.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05001]
gi|394294366|gb|EJE38049.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH06004]
gi|394296167|gb|EJE39797.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04003]
gi|394296543|gb|EJE40168.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05003]
gi|394302442|gb|EJE45887.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051475]
gi|406655743|gb|EKC82166.1| GTP-binding protein YchF [Staphylococcus epidermidis AU12-03]
gi|410883908|gb|EKS31740.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis BVS058A4]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 259/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM----ELRILTQIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|397665244|ref|YP_006506782.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
gi|395128655|emb|CCD06873.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 249/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSNIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVLHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
DP SD++VIN EL +D++ +EK + K+ K+S+S KE E LEKI+ L G
Sbjct: 120 DPLSDIEVINTELALADMETLEKSLLKV----GKNSKSGNKEAIFELKTLEKIKAHLDAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS +
Sbjct: 176 YPVRTLELTPEEEQISKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVQALASQENAS 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G
Sbjct: 293 WTIRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAG 340
>gi|221640299|ref|YP_002526561.1| GTP-dependent nucleic acid-binding protein EngD [Rhodobacter
sphaeroides KD131]
gi|429206034|ref|ZP_19197302.1| GTP-binding and nucleic acid-binding protein YchF [Rhodobacter sp.
AKP1]
gi|221161080|gb|ACM02060.1| GTP-binding protein YchF [Rhodobacter sphaeroides KD131]
gi|428190755|gb|EKX59299.1| GTP-binding and nucleic acid-binding protein YchF [Rhodobacter sp.
AKP1]
Length = 375
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 244/349 (69%), Gaps = 9/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL +L+ ++
Sbjct: 11 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLEILAEIAG 70
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IRE D+I V+RCFED DI HV G++
Sbjct: 71 SKQIIPTRMTFVDIAGLVRGASKGEGLGNQFLANIRECDAIAHVLRCFEDGDITHVEGRI 130
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD- 232
DP +D + I EL+ +D+D IE+R+ L +K K D KE A++ L ++ A ++
Sbjct: 131 DPVADAETIETELMLADMDSIERRLANLARKLKGGD-----KEAADQDRLLRVAMAALEA 185
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G+PARSVT++ ++ + + L LLT KP++YV NV E+ A N V +A +
Sbjct: 186 GRPARSVTVSADDQRAWRMLQLLTSKPVLYVCNVEEASAAK--GNSQSARVAEMARAQGA 243
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISA++E E+ +LP EE +L +G+ E+GL LIR+ Y LLGL+TYFT G KE +
Sbjct: 244 ATVVISARIEEEIAQLPPEEAGMFLEEMGLEEAGLDRLIRAGYELLGLQTYFTVGPKEAR 303
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI GM APQAAGVIH DFEKGFIRAETVAY D+VA A A+E G
Sbjct: 304 AWTITKGMLAPQAAGVIHGDFEKGFIRAETVAYADYVAGRGEAGAKEAG 352
>gi|417921632|ref|ZP_12565123.1| GTP-binding protein YchF [Streptococcus cristatus ATCC 51100]
gi|342834315|gb|EGU68590.1| GTP-binding protein YchF [Streptococcus cristatus ATCC 51100]
Length = 371
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/355 (53%), Positives = 253/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DG AR+V + E+ +K L LLT KP++YVANV+E ++ADP + +V ++
Sbjct: 174 KPVLEDGLSARTVEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|310814962|ref|YP_003962926.1| GTP-binding protein YchF [Ketogulonicigenium vulgare Y25]
gi|385232517|ref|YP_005793859.1| GTPase [Ketogulonicigenium vulgare WSH-001]
gi|308753697|gb|ADO41626.1| GTP-binding protein YchF [Ketogulonicigenium vulgare Y25]
gi|343461428|gb|AEM39863.1| predicted GTPase, probable translation factor [Ketogulonicigenium
vulgare WSH-001]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 246/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDKLASIAS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL +IRE D+I V+RCFED DI HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASRGEGLGNQFLHNIRETDAIAHVLRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD I +EL+ +DL+ IEKR+ L +K K D ++ +E+ KAA ++AL G
Sbjct: 121 DPVSDAQTIEMELMLADLESIEKRLAGLVRKVKGGDKEAIEQEELLKAA----KEALDAG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+V ++D ++ + L LLT KPI+YV NV ES A N +V +A+ +
Sbjct: 177 RPARTVKVSDDQQKQWRMLQLLTSKPILYVCNVEES--AAATGNAFSAKVAEMAAAEGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++L ++E +L +G+ E+GL LIR+ Y LL L+TYFT G KE +A
Sbjct: 235 HVVISAKIEEEISQLDADEAAMFLDEMGLEEAGLDRLIRAGYELLKLQTYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI AG APQAAGVIH DFE+GFIRAET+AYDD+VA G + AR+ G
Sbjct: 295 WTIPAGTLAPQAAGVIHGDFERGFIRAETIAYDDYVALGGESQARDAG 342
>gi|241759507|ref|ZP_04757611.1| GTP-binding protein YchF [Neisseria flavescens SK114]
gi|241320289|gb|EER56622.1| GTP-binding protein YchF [Neisseria flavescens SK114]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPIRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|407973856|ref|ZP_11154767.1| GTP-binding protein YchF [Nitratireductor indicus C115]
gi|407430916|gb|EKF43589.1| GTP-binding protein YchF [Nitratireductor indicus C115]
Length = 367
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 246/353 (69%), Gaps = 15/353 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPRL +S ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLRKISSVTG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEVIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D + + EL+ +DL+ +E+R + +K GK K++ + L +EK + L
Sbjct: 121 DPVADAETVETELMLADLESLERRTAQTQKRATGKDKEAMTVLP------MMEKALELLQ 174
Query: 232 DGKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
+GKP R + L+ + +K L LLT KP++YV NVAE D A+ N H V +A
Sbjct: 175 NGKPVR-LLLDGIAAEDLKILRGLNLLTSKPVLYVCNVAEGDAAE--GNEHSRAVAAMAE 231
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA +EAE+ +LP E EYL ++G+ E GL LIR+ Y LL L T+FTSG
Sbjct: 232 SQGAMSVVISAAIEAEVAQLPDAEAAEYLEAMGLEEPGLDRLIRAGYELLDLITFFTSGP 291
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KET+AWT++ G APQAAGVIH+DFE+GFIRA+T+ YDDFV G AARE G
Sbjct: 292 KETRAWTVKKGAKAPQAAGVIHTDFERGFIRAQTIGYDDFVTLGGEVAAREAG 344
>gi|377810325|ref|YP_005005546.1| GTPase [Pediococcus claussenii ATCC BAA-344]
gi|361057066|gb|AEV95870.1| GTPase of unknown function family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 368
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 255/352 (72%), Gaps = 12/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLDRIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 ADKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+ IN+EL +DLD I+KR+ K++ KG+ KD+ ++L A LEKI+ L
Sbjct: 120 DPIEDIQTINMELSLADLDAIDKRISKVQRAAKGRDKDAVAEL------AVLEKIKPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--D 289
+GK R++ ++ E+ +K L LLT KP++YVAN+AE D+A+P S+ + N + + + D
Sbjct: 174 EGKAVRTIEFDEMEQSIVKGLFLLTSKPVLYVANIAEDDMAEPESSKYFNTIKDYVAQED 233
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
++ + ISA+ E E+ EL E++ ++L + G+ E GL LIR++Y LLGL+T+FT+G K
Sbjct: 234 PEAEVLGISAETEQEIAELEDEDKADFLEAEGIEEPGLNRLIRASYHLLGLQTFFTAGGK 293
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWT + GMTAPQ AGVIHSDFE+GFIRAETV++DD GS+ +E G
Sbjct: 294 ETRAWTFKKGMTAPQTAGVIHSDFERGFIRAETVSFDDLDKYGSMQGVKEAG 345
>gi|83950130|ref|ZP_00958863.1| GTP-binding protein YchF [Roseovarius nubinhibens ISM]
gi|83838029|gb|EAP77325.1| GTP-binding protein YchF [Roseovarius nubinhibens ISM]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 248/351 (70%), Gaps = 13/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDARLDRLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGA+QGEGLGN+FL++IRE D+I V+RCFED D+ HV G+V
Sbjct: 61 SRQIIPTRMTFVDIAGLVKGAAQGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME----KLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230
DP +D + I EL+ +DL+ IEKR++ K++ G + Q + +A KAALE
Sbjct: 121 DPVADAETIETELMLADLESIEKRLQNIIRKVRGGDKEAVQQQRLLEAAKAALE------ 174
Query: 231 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
+G+PAR+V ++D + + K L LLT KP++YV NV+E + A N H +V +A+
Sbjct: 175 -EGRPARTVAVDDDDMRAWKMLQLLTTKPVLYVCNVSEEEAAT--GNAHSAKVAEMAAAQ 231
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+ V ISA++E E+++L EE +L +G++E+GL LIR+ Y LL L TYFT G KE
Sbjct: 232 GNSHVVISARIEEEISQLDDEEAAMFLDEMGLTEAGLDRLIRAGYELLHLETYFTVGPKE 291
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI+ G +AP+AAGVIH DFEKGFIRAET+AYDDFV+ G A++ G
Sbjct: 292 ARAWTIKTGTSAPKAAGVIHGDFEKGFIRAETIAYDDFVSLGGEQPAKDAG 342
>gi|407803841|ref|ZP_11150673.1| GTP-binding protein YchF [Alcanivorax sp. W11-5]
gi|407022251|gb|EKE34006.1| GTP-binding protein YchF [Alcanivorax sp. W11-5]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 246/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +A NFPFCTIEPN G+V VPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAQNFPFCTIEPNTGMVPVPDPRLEKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GASQGEGLGNKFL++IRE D+I VVRCF+D++I+HV GKV
Sbjct: 60 PERILPATMEFVDIAGLVAGASQGEGLGNKFLANIRETDAIAHVVRCFDDDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
P D+D IN EL +DLD +EK R K KG+ KD+ + + L+K+ AL
Sbjct: 120 SPLDDIDTINTELALADLDSVEKAHLRAAKAAKGQDKDAAALV------TVLDKLLPALS 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
DGKPARSV L+D E ++ LLT+KP +Y+ANV E +N ++ V LA
Sbjct: 174 DGKPARSVALSDDELKRVRSYNLLTLKPTMYIANVTEDGFE---NNALLDAVRALAESEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+G V I A++E+E+ EL +E+ ++L+ +G+ E GL +IR+ Y+LLGL+TYFT+G KE
Sbjct: 231 AGVVAICAKIESEIAELDDDEKADFLSEMGMDEPGLNRVIRAGYNLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAP++AGVIH+DFEKGFIRAE + YDD++ A++ G
Sbjct: 291 RAWTIPVGATAPKSAGVIHTDFEKGFIRAEVIGYDDYIQHNGEQGAKDAG 340
>gi|325266751|ref|ZP_08133425.1| GTP-dependent nucleic acid-binding protein EngD [Kingella
denitrificans ATCC 33394]
gi|324981799|gb|EGC17437.1| GTP-dependent nucleic acid-binding protein EngD [Kingella
denitrificans ATCC 33394]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 252/349 (72%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKSG-IEAANYPFCTIEPNVGIVEVPDPRMDELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++I+HV GKV
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++ I EL +DL +EK + +++GK S K DA+K A LEK+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--IREGKRAKSGDK---DAQKLVAVLEKLLPHLNE 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKP RS L+ E ++ L LLT KP +YVANV+E D NPH + + LA +
Sbjct: 175 GKPVRSFGLDKDELALLRPLFLLTAKPAMYVANVSEDGFTD---NPHFDRLKALAEQENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A +E+++ EL +E+ E+LA +G+ E+GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PIVAICAAIESDIAELEDDEKAEFLAEMGMEEAGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDF+A G A A+E G
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFIALGGEAKAKEAG 340
>gi|223043362|ref|ZP_03613408.1| GTP-binding protein YchF [Staphylococcus capitis SK14]
gi|222443151|gb|EEE49250.1| GTP-binding protein YchF [Staphylococcus capitis SK14]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 258/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLFKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ ++KR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVDKRLPKIEKMARQKDKTAEM----ELRILTRIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAEKEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT R GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFRQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVEHGGENGAKEAG-------KQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMKDGDIVHFRFNV 365
>gi|237747437|ref|ZP_04577917.1| GTP-dependent nucleic acid-binding protein EngD [Oxalobacter
formigenes HOxBLS]
gi|229378788|gb|EEO28879.1| GTP-dependent nucleic acid-binding protein EngD [Oxalobacter
formigenes HOxBLS]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/348 (52%), Positives = 255/348 (73%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A N+PFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IPAENYPFCTIEPNVGIVEVPDPRLNELAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL+HIRE D+I+QVVRCF+++++VHV GKV
Sbjct: 60 PERILPAVVEFVDIAGLVAGASKGEGLGNQFLAHIRETDAIVQVVRCFQNDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD+ VI EL +DL+ +EK +++ +KK + + +S D LEK+ L
Sbjct: 120 DPLSDIAVIQTELALADLNTVEKVIQREIKKAGSGNKESARLCD----LLEKVAAHLNKA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RS+ L+ + + ++ LCL+T KP +YVANV++ + NP ++++ + A +
Sbjct: 176 EPVRSMGLDKEQMELLRPLCLITAKPTMYVANVSDDGFTN---NPLLDQLKHYAVSQNAP 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VTI A +E+E+ ELP E+R E+L+ +G+ E GL LIR+ + LLGL+TYFT+G KE +A
Sbjct: 233 IVTICAAIESEIVELPEEDRAEFLSDMGMEEPGLNRLIRAAFKLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI AG TAP+AAGVIH+DFE+GFIRA+T++++D++A A+E G
Sbjct: 293 WTIHAGDTAPKAAGVIHTDFERGFIRAQTISFEDYIAYKGETGAKEAG 340
>gi|409196696|ref|ZP_11225359.1| GTP-binding protein YchF [Marinilabilia salmonicolor JCM 21150]
Length = 366
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 257/380 (67%), Gaps = 17/380 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFN + N KAQ+ANFPFCTIEPNVG++ VPD RL L L K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNCL-SNAKAQSANFPFCTIEPNVGVITVPDERLVQLEKLVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VE VDIAGLVKGAS+GEGLGNKFL++IRE D+I+ V+RCFED+++ HV+G +
Sbjct: 60 PQKVVPTTVEIVDIAGLVKGASKGEGLGNKFLANIRETDAIIHVLRCFEDDNVTHVDGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMD 232
DP D DVI++EL DL+ I+ R+ K +K +KD ++K D L K + AL
Sbjct: 120 DPVRDKDVIDMELQLKDLETIDGRITKTEKIAKTSKDPEAKRLLD----VLLKYKAALES 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GK AR+V L++ E+ K L LLT KPI+YV NV E+ + N HV V+ D +
Sbjct: 176 GKSARTVELSEQEQKVAKDLFLLTNKPIMYVCNVDEASVI--TGNKHVEAVIENVKDEDA 233
Query: 293 GRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ I+AQ EAE+ EL + EER +L LG+ ESG+ LIRS Y LL L+TYFT+GEKE
Sbjct: 234 QVLVIAAQTEAEIAELETFEERQMFLDDLGLKESGVSKLIRSAYKLLNLKTYFTAGEKEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT AG APQAAGVIH+DFEKGFIR E + YD++V GS A +E G + H
Sbjct: 294 RAWTFPAGALAPQAAGVIHTDFEKGFIRTEVIKYDEYVNLGSEQACKEAGKM-------H 346
Query: 412 LASYKYFHWNSYMLRYFFSL 431
+ +Y + ++ + F++
Sbjct: 347 IEGKEYEVQDGDIMHFRFNV 366
>gi|418940703|ref|ZP_13494057.1| GTP-binding protein YchF [Rhizobium sp. PDO1-076]
gi|375052527|gb|EHS48940.1| GTP-binding protein YchF [Rhizobium sp. PDO1-076]
Length = 367
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/372 (50%), Positives = 253/372 (68%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPR+ L+ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRMQKLASIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGNKFL++IREVD+++ V+RCFED+DI HV GK+
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D + I EL+ +DL+ +E+R+E+ +K A + L A+ +E + + L +GK
Sbjct: 121 NPVGDAETIETELMLADLESLERRVEQTRKRAASKDKESL---AQLPVMEAVIKLLNEGK 177
Query: 235 PARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
PAR + TL E + +K L LLT P++YV NVAESD D N H V +A +
Sbjct: 178 PARILLKTLAADEIEVLKGLNLLTSHPVLYVCNVAESDAVD--GNAHTKAVAEMAKAQGA 235
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISA +EAE+ +LP EE E+L++LG+ E+GL LIR+ Y LL L TYFT G KET+
Sbjct: 236 ECVIISAAIEAEVAQLPDEESKEFLSALGLEEAGLDRLIRAGYHLLDLITYFTVGPKETR 295
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE--KGLVSWLHYHE 410
AWTI G APQAAGVIH+DFE+GFIRA T+++DD++A A+E KG Y
Sbjct: 296 AWTIVRGTKAPQAAGVIHTDFERGFIRAFTISFDDYIAFKGEVGAKEAGKGRDEGKEYVV 355
Query: 411 HLASYKYFHWNS 422
H +F +N+
Sbjct: 356 HDGDVIHFRFNT 367
>gi|406838987|ref|ZP_11098581.1| GTP-binding protein YchF [Lactobacillus vini DSM 20605]
Length = 366
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 248/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDQRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HVN KV
Sbjct: 60 AKKIIHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++ INLEL +DLD I KR K++K + KD + AE A L+KI+ L G
Sbjct: 120 DPLDDIETINLELTVADLDSINKRYAKVEKVARTKDKAAM----AEFAILKKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ + E+ +K L LLT KP++YVAN+AE+D+ADP +V ++ A SG
Sbjct: 176 KPVRSLDFAEDEQKIVKGLFLLTSKPVLYVANIAEADMADPLKCKYVQQIKQYADSEGSG 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ + A+ E E+ +L +++ E+L + GV ESGL LI+++Y LLGL T+FT+G KET+A
Sbjct: 236 MLAVCAKTEEEIAQLDDDDKQEFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT GM APQ AG+IHSDFE+GFIRAETV++ D GSLAA RE G
Sbjct: 296 WTFHQGMKAPQVAGIIHSDFERGFIRAETVSFTDLDKYGSLAAVREAG 343
>gi|154505933|ref|ZP_02042671.1| hypothetical protein RUMGNA_03475 [Ruminococcus gnavus ATCC 29149]
gi|336432647|ref|ZP_08612478.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 2_1_58FAA]
gi|153793951|gb|EDN76371.1| GTP-binding protein YchF [Ruminococcus gnavus ATCC 29149]
gi|336017929|gb|EGN47682.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 256/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDHRLDVLGEMYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KITPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K+ K D + E L++I++ L + K A
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKVVKLSRNDKTAA----KELELLKRIKEHLEENKMA 175
Query: 237 RSVTLND-FERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
+S T +D E++ + LLT KP+I+ ANV E DLA+ G+ N V +V A++
Sbjct: 176 KSFTTDDEEEQEWLTSYNLLTYKPVIFAANVTEDDLANDGADNAGVQKVREYAAEENCEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE+E +AW
Sbjct: 236 FVVCAQIEQEIAELDEDEKKLFLDDLGLEESGLEKLIKASYHLLGLISYLTAGEQECRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI G APQAAG IH+DFE+GFIRAE V+YDD +A G+ AAA+EKGLV
Sbjct: 296 TITKGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMACGTHAAAKEKGLV 344
>gi|385329089|ref|YP_005883392.1| translation-associated GTPase [Neisseria meningitidis alpha710]
gi|418288983|ref|ZP_12901388.1| GTP-binding protein EngD [Neisseria meningitidis NM233]
gi|418291238|ref|ZP_12903272.1| GTP-binding protein EngD [Neisseria meningitidis NM220]
gi|308389941|gb|ADO32261.1| translation-associated GTPase [Neisseria meningitidis alpha710]
gi|372200202|gb|EHP14319.1| GTP-binding protein EngD [Neisseria meningitidis NM220]
gi|372200633|gb|EHP14680.1| GTP-binding protein EngD [Neisseria meningitidis NM233]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|403045020|ref|ZP_10900498.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus sp.
OJ82]
gi|402765084|gb|EJX19168.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus sp.
OJ82]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 259/380 (68%), Gaps = 18/380 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLNKLTEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++VIN+ELV +DL+ +EKR+ EK+ K K KD+ + E L +I++AL
Sbjct: 120 DPVDDIEVINMELVLADLESVEKRLPKAEKMAKQKDKDAVN------EARILARIKEALE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G P RS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + AS
Sbjct: 174 EGNPVRSLEFNDEDQKFVNQAQLLTSKEMLYIANVGEDEIGDE-DNEKVKLIREYASKED 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + ISA++E E+ L E+R +L LG+ E GL LIR+TY LLGL TYFT+G +E
Sbjct: 233 SEVIVISAKIEEEIATLEDEDREMFLEDLGIEEPGLDRLIRTTYDLLGLATYFTAGVQEV 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT +GMTAPQ AG+IH+DFE+GFIRAE +YDD+V A++ G +
Sbjct: 293 RAWTFISGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEFNGENGAKDAG-------KQR 345
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 346 LEGKEYIMKDGDVVHFRFNV 365
>gi|189345890|ref|YP_001942419.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobium
limicola DSM 245]
gi|189340037|gb|ACD89440.1| GTP-binding protein YchF [Chlorobium limicola DSM 245]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 191/347 (55%), Positives = 252/347 (72%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPD R+H+++ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDERMHLIANVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCF+D++I+HV GK+
Sbjct: 60 TPTLVPATLEIVDIAGLVRGASKGEGLGNQFLSHIREVDAIVHVVRCFDDSNIIHVEGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+ I+ EL+ +DLD +E+R+EKL+K K+ + L+ E A E+I L +G
Sbjct: 120 DPADDIATIDTELMLADLDSMERRIEKLRKNARKEKELLLQ--VELA--ERIITGLSEGV 175
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR++ E++ +Q LLT KPI+Y ANV E+DL P N + V +A+ S
Sbjct: 176 PARAIIQGPEEKELARQFFLLTSKPILYAANVGEADL--PAGNAYTERVAEIAASSGSMM 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA+ EA++ ELP EER E+L SLG+ SGL +I++ Y LLGL+TYFT+GEKE AW
Sbjct: 234 LIISAKSEADIAELPEEERPEFLESLGLEMSGLDRVIKTAYDLLGLQTYFTAGEKEVHAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G AP+AAG IHSDFEKGFIRAE ++Y D + GS +E G
Sbjct: 294 TIRKGAAAPEAAGAIHSDFEKGFIRAEVMSYRDLIELGSEQKVKEAG 340
>gi|406658907|ref|ZP_11067047.1| GTP-binding protein YchF [Streptococcus iniae 9117]
gi|405579122|gb|EKB53236.1| GTP-binding protein YchF [Streptococcus iniae 9117]
Length = 372
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/354 (53%), Positives = 253/354 (71%), Gaps = 12/354 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLNKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ I KR +++K KD +S AE A LEKI+
Sbjct: 120 DAFVDPMADIDTINLELILADLESINKRYARVEKMARTQKDKESV----AEFAVLEKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E +KQL LLT KP++YVANV E +ADP +VN + + A+
Sbjct: 176 VLEDGKSARTINFTDEEEKVVKQLFLLTTKPVLYVANVDEDKVADPDDIDYVNIIRDFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347
+ V ISA+ E E++EL EE + E+L ++G++ESG+ L R+ Y LLGL TYFT+G
Sbjct: 236 TENAEVVVISARAEEEISELDDEEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAG 295
Query: 348 EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 296 VKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAG 349
>gi|417905823|ref|ZP_12549620.1| GTP-binding protein YchF [Staphylococcus capitis VCU116]
gi|341598493|gb|EGS40997.1| GTP-binding protein YchF [Staphylococcus capitis VCU116]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 258/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLFKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ ++KR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVDKRLPKIEKMARQKDKTAEM----ELRILTRIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAEKEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRNTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT R GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFRQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVEHGGENGAKEAG-------KQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMKDGDIVHFRFNV 365
>gi|114328982|ref|YP_746139.1| GTP-dependent nucleic acid-binding protein EngD [Granulibacter
bethesdensis CGDNIH1]
gi|114317156|gb|ABI63216.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1]
Length = 364
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 243/348 (69%), Gaps = 8/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPR+ L+ +K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTATVAAQAANYPFCTIEPNVGRVAVPDPRMEKLATAAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK VP S+EFVDIAGLV+GAS+GEGLGN+FL +IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKIVPTSLEFVDIAGLVRGASRGEGLGNQFLGNIREVDAIIHVLRCFEDDDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D + + EL+ +DL+ +EKR+ L KK + D ++ A+ +E I AL G
Sbjct: 121 DPVRDAETVETELMLADLESLEKRVPLLQKKARGNDKEAA----AQLELIEPIITALQAG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+ D +R + +L L+T KP++YVANV E+ A N V +LA+ +
Sbjct: 177 QPARTAIPAD-QRVAASRLQLMTSKPVLYVANVEEASAAS--GNAISARVADLAARQGTR 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA +EAE+++L E+R E+LA LG+ +SGL +IR+ Y LLGL TYFT G KET+A
Sbjct: 234 SVVISAAIEAEVSQLGDEDRAEFLAGLGLVDSGLDRVIRAGYDLLGLLTYFTCGPKETRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G APQAAGVIH DFE+GFI AE + YDD++ G A A+E G
Sbjct: 294 WTIEQGTRAPQAAGVIHGDFERGFIAAEVIGYDDYITLGGEAGAKEAG 341
>gi|404417111|ref|ZP_10998919.1| GTP-binding protein YchF [Staphylococcus arlettae CVD059]
gi|403490545|gb|EJY96082.1| GTP-binding protein YchF [Staphylococcus arlettae CVD059]
Length = 365
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 259/377 (68%), Gaps = 12/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+VL+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDNRLNVLTEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++VIN+EL+ +DL+ +EKR+ KL+K + ++ + E L +++AL +G+
Sbjct: 120 DPIDDIEVINMELILADLESVEKRLPKLEKMARQKDKNAVN---EVRILTTVKEALEEGR 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RS+ N+ ++ I Q LLT K ++Y+ANV E ++ D N V + AS S
Sbjct: 177 PVRSLEFNEEDQKYINQAQLLTSKDMLYIANVGEDEIGDE-DNEKVKAIREYASKEGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA++E E+ L ++R +L LG+ E GL LIR+TY+LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDDDRAMFLEDLGIEEPGLDILIRTTYNLLGLATYFTAGVEEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V A+E G + L
Sbjct: 296 TFKTGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEFNGEHGAKEAG-------KQRLEG 348
Query: 415 YKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 349 KDYIMQDGDVVHFRFNV 365
>gi|116493449|ref|YP_805184.1| GTPase, translation factor [Pediococcus pentosaceus ATCC 25745]
gi|421894881|ref|ZP_16325364.1| GTPase of unknown function family protein [Pediococcus pentosaceus
IE-3]
gi|116103599|gb|ABJ68742.1| Predicted GTPase, probable translation factor [Pediococcus
pentosaceus ATCC 25745]
gi|385272177|emb|CCG90736.1| GTPase of unknown function family protein [Pediococcus pentosaceus
IE-3]
Length = 368
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/382 (48%), Positives = 267/382 (69%), Gaps = 19/382 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDQRLDRIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++ INLEL +DL+ +EKR+ K++ KG+ KD+ ++L A LEK+ L
Sbjct: 120 DPIEDIETINLELSLADLESVEKRLTKVQRAAKGRDKDAVAEL------AVLEKLHPVLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--D 289
GK AR++ ++ E +K L LLT KP++YVAN+AE D+ADP ++ + E+ + + D
Sbjct: 174 AGKAARTIDFDESEMPIVKGLFLLTTKPVLYVANIAEDDMADPEASKYFKEIKDYVAQED 233
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ + ISA+ E E+ EL +E+ E+L + G++E GL LI+++Y+LLGL+T+FT+G K
Sbjct: 234 PDAQVLGISAETEQEIAELEDDEKAEFLEAEGITEPGLNRLIQASYNLLGLQTFFTAGGK 293
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYH 409
ET+AWT + GMTAPQ AGVIHSDFE+GFIRAETV++DD GS+ RE G +
Sbjct: 294 ETRAWTFKKGMTAPQTAGVIHSDFERGFIRAETVSFDDLDKYGSMQGVREAGRL------ 347
Query: 410 EHLASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 348 -RLEGKEYLVQDGDIIEFRFNV 368
>gi|52842860|ref|YP_096659.1| GTP-dependent nucleic acid-binding protein EngD [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|54295492|ref|YP_127907.1| GTP-dependent nucleic acid-binding protein EngD [Legionella
pneumophila str. Lens]
gi|378778549|ref|YP_005186988.1| GTP binding protein [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|52629971|gb|AAU28712.1| GTP binding protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53755324|emb|CAH16820.1| hypothetical protein lpl2579 [Legionella pneumophila str. Lens]
gi|307611529|emb|CBX01206.1| hypothetical protein LPW_29051 [Legionella pneumophila 130b]
gi|364509365|gb|AEW52889.1| GTP binding protein [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 249/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVLHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
DP SD++VIN EL +D++ +EK + K+ K+S+S KE E LEKI+ L G
Sbjct: 120 DPLSDIEVINTELALADMETLEKSLLKV----GKNSKSGNKEAIFELKTLEKIKAHLDAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS +
Sbjct: 176 YPVRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVQALASQENAS 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G
Sbjct: 293 WTIRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAG 340
>gi|407697456|ref|YP_006822244.1| GTPase [Alcanivorax dieselolei B5]
gi|407254794|gb|AFT71901.1| putative GTPase, probable translation factor [Alcanivorax
dieselolei B5]
Length = 363
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/350 (52%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V +PDPR L+ +
Sbjct: 1 MGIQCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPIPDPRQDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF+D +++HV GKV
Sbjct: 60 PERVLPATMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
P D+ VIN EL +DLD +E+ R K KG+ K++Q+ L L+K+ L
Sbjct: 120 SPLDDIGVINTELALADLDTVERAHQRATKAAKGQNKEAQALLP------VLDKVLPMLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+PAR+V L+D ER ++ L LLT+KP +Y+ANV E +NP ++ V LA
Sbjct: 174 EGEPARAVELSDDERKQLRSLNLLTLKPTMYIANVDEDGF---DNNPLLDAVRELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A++EAE+ EL +E+ ++LA LG+ E GL +IR+ Y+LLGL TYFT+G+KE
Sbjct: 231 ASVVPICAKIEAEIAELDDDEKADFLADLGMEEPGLNRVIRAGYTLLGLHTYFTAGKKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G TAPQAAGVIH+DFEKGFIRAE AYDD+VA A++ G
Sbjct: 291 RAWTVKVGATAPQAAGVIHTDFEKGFIRAEVTAYDDYVAYNGEQGAKDAG 340
>gi|224475512|ref|YP_002633118.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420119|emb|CAL26933.1| putative GTP-binding protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 365
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 248/350 (70%), Gaps = 11/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL LS +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLQALSDIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKVIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++VIN+ELV +DL+ ++K R+EK+ + K KD+ ++++ LE+I++AL
Sbjct: 120 DPLDDIEVINMELVLADLESVDKRLPRLEKMARQKDKDAVNEVR------ILERIKEALE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
G P RS+ N+ + +KQ LLT KP+IY+ANV E ++ + N V + A
Sbjct: 174 AGDPVRSLEFNEEDAKYVKQAQLLTSKPMIYIANVGEDEI-NEADNEKVTTIKEYADKEG 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + ISA++E E+ L E++ +L LG++E GL LIRSTY LLGL TYFT+G +E
Sbjct: 233 SEVIVISAKIEEEIATLDEEDKEMFLEDLGITEPGLDRLIRSTYDLLGLATYFTAGVQEV 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT R GMTAPQ AG+IH+DFE+GFIRAE ++ D+V A+E G
Sbjct: 293 RAWTFRKGMTAPQCAGIIHTDFERGFIRAEVTSFKDYVENNGEHGAKEAG 342
>gi|407780095|ref|ZP_11127342.1| GTP-binding protein YchF [Nitratireductor pacificus pht-3B]
gi|407298093|gb|EKF17238.1| GTP-binding protein YchF [Nitratireductor pacificus pht-3B]
Length = 367
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 245/353 (69%), Gaps = 15/353 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPRL +S ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLKKISAITK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D + + EL+ +DL+ +E+R M+K GK K++ + L +E+ L
Sbjct: 121 DPVADAETVETELMLADLESLERRTTQMQKRASGKDKEAMTLLP------MMEQALALLQ 174
Query: 232 DGKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
DGKP R + L+ + +K L LLT KP++YV NVAE+D A+ N H V +A
Sbjct: 175 DGKPVR-LLLDGIAAEDLKILRGLNLLTSKPVLYVCNVAEADAAE--GNAHSQAVATMAD 231
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA +EAE+ +L E EYL ++G+ E GL LIR+ Y LL L T+FTSG
Sbjct: 232 GQGALSVVISAAIEAEVAQLSDAEAAEYLEAMGLEEPGLDRLIRAGYELLDLITFFTSGP 291
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KET+AWT+ G APQAAGVIH+DFE+GFIRA+T+ Y DFVA G AARE G
Sbjct: 292 KETRAWTVHKGAKAPQAAGVIHTDFERGFIRAQTIGYQDFVALGGETAAREAG 344
>gi|222529619|ref|YP_002573501.1| GTP-dependent nucleic acid-binding protein EngD
[Caldicellulosiruptor bescii DSM 6725]
gi|222456466|gb|ACM60728.1| GTP-binding protein YchF [Caldicellulosiruptor bescii DSM 6725]
Length = 362
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 255/350 (72%), Gaps = 12/350 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
+ D+++INLEL+F+D++ +E+R++K +K AK+S+ + E +EKI L GK A
Sbjct: 120 RRDIEIINLELIFADMEMLERRLDKTRK-LAKNSKEAVH---ELEIMEKIYSTLESGKMA 175
Query: 237 RSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
R++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 176 RTLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGSE 231
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +A
Sbjct: 232 VIVICAKIEEEIAALPEEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRA 291
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGLV
Sbjct: 292 WTIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLV 341
>gi|418964259|ref|ZP_13516076.1| GTP-binding protein YchF [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383341295|gb|EID19556.1| GTP-binding protein YchF [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 371
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SNFVDPMADIETINLELILADLESINKRYARVEKVARTQKDKDSV------AEFHVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L +G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++
Sbjct: 174 KPVLENGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPNNIEYVQQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAKVVVISARAEEEISELDDEDKAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|254470562|ref|ZP_05083966.1| GTP-binding protein YchF [Pseudovibrio sp. JE062]
gi|211960873|gb|EEA96069.1| GTP-binding protein YchF [Pseudovibrio sp. JE062]
Length = 366
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/352 (53%), Positives = 251/352 (71%), Gaps = 14/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR ++ +++
Sbjct: 1 MGFQCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGDVAVPDPRQSKIAAIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I V+RCFE++DI HV+GK+
Sbjct: 61 SKEIIPTRLTFVDIAGLVRGASKGEGLGNQFLANIREVDAIAHVLRCFENDDITHVDGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQA---L 230
DP +D + + EL+ SD++ +EKR+ L KK K+ D + KAAL ++QA L
Sbjct: 121 DPIADAETVETELMVSDMESLEKRIAPLEKKAKSGDKDA-------KAALPIMEQALAIL 173
Query: 231 MDGKPARSVTLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
DGKP R++ L D E +K L LLT KP++YV NV E + AD G N +V +A +
Sbjct: 174 QDGKPVRALGLTDPEEIKQLKMLNLLTSKPVLYVCNV-EEEAADKG-NSLSAKVQAMAEE 231
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISA +EAE+ +L EE+ EY+A +G+ E GL LIR+ Y LL L TYFT+G K
Sbjct: 232 QGAASVVISAAIEAEIAQLEDEEQREYMADMGLEEPGLDRLIRAGYGLLELITYFTAGPK 291
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWTI AG APQAAGVIH+DFE+GFIRA+T+AY+D+V G A+E G
Sbjct: 292 ETRAWTIVAGTKAPQAAGVIHTDFERGFIRAQTIAYNDYVELGGETPAKEAG 343
>gi|372270584|ref|ZP_09506632.1| GTP-binding protein YchF [Marinobacterium stanieri S30]
Length = 363
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 179/348 (51%), Positives = 251/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN GIV +PDPRL+ LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNAGIVPMPDPRLNALSEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV ++
Sbjct: 60 PEKVIPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P D++ INLEL +DL+ EK+++++++ K D ++ A KA LEK+ L +G
Sbjct: 120 HPLEDIETINLELALADLESCEKQLQRVQRTAKGGDKEAI----ATKALLEKLIPHLEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RS+ L++ E + L LLT KP +Y+ANV+E D NP++++V LA+ +
Sbjct: 176 QPVRSLALDEAELKLVPTLHLLTTKPTMYIANVSEDGFED---NPYLDQVKELAASENAE 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++E+E++EL +E++E+L +G+ E GL +IR+ YSLLGL+TYFT+G KE +A
Sbjct: 233 VVAICNKLESEISELEDDEKIEFLQDMGMEEPGLDRVIRAGYSLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+R G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ A++ G
Sbjct: 293 WTVRIGATAPQAAGVIHTDFEKGFIRAEVISYDDFIEHKGEQGAKDAG 340
>gi|319940211|ref|ZP_08014564.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
gi|319810682|gb|EFW07012.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 371
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 253/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYARVEKVARTQKDKDSV------AEFHVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L +G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++
Sbjct: 174 KPVLENGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIEYVQQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT R GM APQ AG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFRRGMKAPQVAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|365925854|ref|ZP_09448617.1| GTP-binding protein YchF [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 366
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 247/348 (70%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ N A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAIT-NAGAEMANYPFATIDPNVGMVEVPDQRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV+ KV
Sbjct: 60 AKKIIRTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLEL +DL+ I KR +++K + KD ++ AE L+KI+ L G
Sbjct: 120 DPLDDIDTINLELTLADLESINKRYARVEKVARTKDKEAV----AEFNVLKKIKPVLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ + E+ +K L LLT KP++YVAN+AE D+ADP SN +V ++ A + S
Sbjct: 176 KPVRSLEFEEEEQKIVKGLFLLTSKPVLYVANIAEEDMADPSSNSYVQQIQKFAEEEGSQ 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ +SA+ E E+ +L ++ ++L + GV ESGL LI++ Y LLGL T+FT+G KET+A
Sbjct: 236 MLAVSAKTEEEIAQLDDADKKDFLEAEGVEESGLDRLIKAAYKLLGLATFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + GM APQ AG+IHSDFE+GFIRAET +++D GS+ A RE G
Sbjct: 296 WTFKQGMKAPQVAGIIHSDFERGFIRAETFSFEDLDQYGSVTAVREAG 343
>gi|323350833|ref|ZP_08086492.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis VMC66]
gi|422822785|ref|ZP_16870978.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK353]
gi|422847884|ref|ZP_16894567.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK72]
gi|422850478|ref|ZP_16897148.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK150]
gi|322123007|gb|EFX94710.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis VMC66]
gi|324989582|gb|EGC21528.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK353]
gi|325686481|gb|EGD28510.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK72]
gi|325695764|gb|EGD37663.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK150]
Length = 376
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/358 (52%), Positives = 255/358 (71%), Gaps = 15/358 (4%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAAL 223
G+ VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNVL 175
Query: 224 EKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEV 283
+KI+ L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++
Sbjct: 176 QKIKPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQI 235
Query: 284 MNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTY 343
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TY
Sbjct: 236 REFAATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTY 295
Query: 344 FTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
FT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 FTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYNDLVHYGSEKAVKEAG 353
>gi|82750075|ref|YP_415816.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus RF122]
gi|82655606|emb|CAI80002.1| GTP-binding protein [Staphylococcus aureus RF122]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 258/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFADDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRATYELLGLSTYFTAGVQEVHA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|196228717|ref|ZP_03127583.1| GTP-binding protein YchF [Chthoniobacter flavus Ellin428]
gi|196226998|gb|EDY21502.1| GTP-binding protein YchF [Chthoniobacter flavus Ellin428]
Length = 389
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 258/369 (69%), Gaps = 28/369 (7%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNAV + KAQAAN+PFCTI+PNVG+V VPDPRL LS LS S+
Sbjct: 2 LSAGIVGLPNVGKSTLFNAVTKTQKAQAANYPFCTIDPNVGVVTVPDPRLQALSNLSHSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS GEGLGN+FLSHIREV++I+QVVRCFED DI HV G VDP
Sbjct: 62 KIVPAAIEFVDIAGLVKGASAGEGLGNQFLSHIREVNAIVQVVRCFEDADIHHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++VIN EL+ +DL ++KR ++ K ++ D +K AE A EK+ L GKP
Sbjct: 122 VRDIEVINTELILADLAAVQKRADRQTKAARSGDKAAK----AEIAVCEKLIPHLDAGKP 177
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA-----------DPGSNP------ 278
A ++ L+D E +++ LL+ KP I+ NVAE+DLA + G P
Sbjct: 178 ATTLPLSDEEAKIMREFFLLSGKPTIFACNVAEADLANVVAIVEAAKDNEGVKPSENVEL 237
Query: 279 -----HVNEVMNLA-SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIR 332
+V V + A S + V ISAQ+E+EL L +EE EYLA +GV+ SG+ LIR
Sbjct: 238 TPTARYVQAVQDYARSHFGTEAVVISAQIESELATLAAEEAAEYLAGIGVASSGVDALIR 297
Query: 333 STYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAG 392
+ Y LLGLRTY T+GE+ET+AWTIRAG AP AAGVIH+DFE+GFI AETV +DD ++ G
Sbjct: 298 AVYHLLGLRTYLTTGEQETRAWTIRAGDKAPAAAGVIHTDFERGFIAAETVHFDDLISLG 357
Query: 393 SLAAAREKG 401
S A ARE G
Sbjct: 358 SHAKAREAG 366
>gi|427412720|ref|ZP_18902912.1| GTP-binding protein YchF [Veillonella ratti ACS-216-V-Col6b]
gi|425715536|gb|EKU78522.1| GTP-binding protein YchF [Veillonella ratti ACS-216-V-Col6b]
Length = 368
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 197/372 (52%), Positives = 266/372 (71%), Gaps = 8/372 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD R++ L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDDRINQLAVM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
KS+K +PA++ FVDIAGLV GAS+GEGLGNKFLSHIR+VD+I QVVRCF+D +I HV G
Sbjct: 60 FKSKKIIPAAMRFVDIAGLVAGASKGEGLGNKFLSHIRQVDAIAQVVRCFDDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+DP D+++IN EL +DLD +EKR ++++K K+ D +++ E LEK+ + L
Sbjct: 120 SIDPIRDIEIINTELCLADLDSVEKRKQRIEKIAKSGDKDARI----ELPILEKVIEGLG 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ P R+ L++ E + +K+L LLT K +YVANV+E +++D +N +V V A++
Sbjct: 176 EAIPVRAQGLDEEELEILKELTLLTAKKSLYVANVSEDEISDYEANEYVKHVEEYAANEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
SG V +SA++E+E+ EL EE +L LG++ESGL LI+++YSLLGL +FT+GE E
Sbjct: 236 SGVVVVSARIESEIAELSDEEAAAFLEELGLTESGLTKLIKASYSLLGLINFFTAGEMEA 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV--SWLHYH 409
+AWTI G APQAAG IHSD EKGFIRAE VA+DD VA GS AA+EKGLV Y
Sbjct: 296 RAWTIVEGTKAPQAAGKIHSDIEKGFIRAEIVAFDDLVACGSQNAAKEKGLVRLEGKDYV 355
Query: 410 EHLASYKYFHWN 421
YF +N
Sbjct: 356 MKDGDVTYFRFN 367
>gi|266622037|ref|ZP_06114972.1| GTP-binding protein YchF [Clostridium hathewayi DSM 13479]
gi|288866276|gb|EFC98574.1| GTP-binding protein YchF [Clostridium hathewayi DSM 13479]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 252/349 (72%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GI+GLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ L S
Sbjct: 1 MKLGIIGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDERLGKLAALYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDGNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D+D I+LEL+FSDL+ +E+R+ K K D L ++ E L+ ++ L DGK A
Sbjct: 120 LRDIDTIDLELIFSDLEILERRISKTAKSAFNDKS--LAKELE--ILKAVKAHLEDGKLA 175
Query: 237 RSVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
RS+ +D + ++ + L LLT KP+I+ ANV+E DLAD G SN +V +V A+ S
Sbjct: 176 RSMEFDDDDAQEFVASLNLLTYKPVIFAANVSEDDLADDGASNEYVKQVRGFAAGNGSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+E E+ EL +ER +L LG++ESGL LI ++Y LLGL +Y T+G ET+AW
Sbjct: 236 FVICAQIEQEIAELEEDERKMFLEDLGLTESGLEKLIAASYHLLGLISYLTAGPTETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFI+AE V Y D + G+ AA+EKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHSDFERGFIKAEVVNYQDLLDCGTYTAAKEKGLV 344
>gi|451344564|ref|ZP_21913620.1| GTP-binding protein YchF [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449336726|gb|EMD15898.1| GTP-binding protein YchF [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 366
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 248/349 (71%), Gaps = 4/349 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI PNVG+V VPD RL L L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NSQVEAANYPFATINPNVGVVEVPDHRLDDLRTLFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K + + EF DIAGLVKGAS+GEGLGNKFL++IRE D+I +VVRCF D DI HV+G V
Sbjct: 60 PKKTIYTTFEFTDIAGLVKGASRGEGLGNKFLANIRETDAICEVVRCFRDKDITHVDGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP DV+ I+LELVF+D++ +EKR+ KL++ KAK + + KE+ E L I++ L G
Sbjct: 120 DPIRDVETIHLELVFADIETVEKRISKLER-KAKSGEKEAKEEME--VLTPIKETLEKGL 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+++ + E +KQ LLTMKPIIYVAN+ E D+ +P +NP+ +++ A +
Sbjct: 177 PARTLSFSKEEWVYVKQYNLLTMKPIIYVANMGEEDIENPDNNPYYLQLVEYAHKENADV 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V I A++E+EL L +++ ++ LG+ ESGL LI+ TY LL L+T+FT G E +AW
Sbjct: 237 VPICAKIESELAGLGEDDKAIFMDDLGIKESGLDKLIKETYHLLNLKTFFTVGPDECRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
T + GMTAPQ AG+IH+DFE+GFIRAET +YDD + S A RE G +
Sbjct: 297 TFKDGMTAPQMAGIIHTDFERGFIRAETYSYDDMMIYKSENALREAGKI 345
>gi|397668328|ref|YP_006509865.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
gi|395131739|emb|CCD10032.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
Length = 363
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 248/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVIHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
DP SD++VIN EL +D++ +EK + K+ K+S+S KE E LEKI+ L G
Sbjct: 120 DPLSDIEVINTELALADMETLEKSLLKV----GKNSKSGNKEAIFELKTLEKIKAHLDAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ L E K+L LLT KP++Y+ANV ++ + NP + +V LAS +
Sbjct: 176 YPVRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLAKVQALASQENAS 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G
Sbjct: 293 WTIRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAG 340
>gi|392971048|ref|ZP_10336446.1| putative translation-associated GTPase [Staphylococcus equorum
subsp. equorum Mu2]
gi|392511050|emb|CCI59708.1| putative translation-associated GTPase [Staphylococcus equorum
subsp. equorum Mu2]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/380 (49%), Positives = 259/380 (68%), Gaps = 18/380 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLNKLAEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++VIN+ELV +DL+ +EKR+ EK+ K K KD+ + E L +I++AL
Sbjct: 120 DPVDDIEVINMELVLADLESVEKRLPKAEKMAKQKDKDAVN------EARILARIKEALE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G P RS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + AS
Sbjct: 174 EGNPVRSLEFNDEDQKFVNQAQLLTSKEMLYIANVGEDEIGDE-DNEKVKLIREYASKED 232
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S + ISA++E E+ L E+R +L LG+ E GL LIR+TY LLGL TYFT+G +E
Sbjct: 233 SEVIVISAKIEEEIATLEDEDREMFLEDLGIEEPGLDRLIRTTYDLLGLATYFTAGVQEV 292
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT +GMTAPQ AG+IH+DFE+GFIRAE +YDD+V A++ G +
Sbjct: 293 RAWTFISGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEFNGENGAKDAG-------KQR 345
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 346 LEGKEYIMKDGDVVHFRFNV 365
>gi|417916895|ref|ZP_12560461.1| GTP-binding protein YchF [Streptococcus mitis bv. 2 str. SK95]
gi|342827642|gb|EGU62024.1| GTP-binding protein YchF [Streptococcus mitis bv. 2 str. SK95]
Length = 371
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 251/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR FED +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFEDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPESIDYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|167950645|ref|ZP_02537719.1| translation-associated GTPase [Endoriftia persephone
'Hot96_1+Hot96_2']
gi|345862759|ref|ZP_08814973.1| GTP-dependent nucleic acid-binding protein EngD [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345126101|gb|EGW55967.1| GTP-dependent nucleic acid-binding protein EngD [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 363
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/347 (54%), Positives = 253/347 (72%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+V +PDPRL ++G+
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKATIA-AENYPFCTIDPNVGVVPLPDPRLDAIAGIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q +P +++FVDIAGLV+GAS+GEGLGNKFL++IRE D++ QVVRCFE++D+VHV GK+
Sbjct: 60 PQAVLPTTMQFVDIAGLVEGASKGEGLGNKFLANIRETDAVAQVVRCFENDDVVHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +DV VIN EL +DL+ +EK ++K + +AK K+ A KA LE+I L DGK
Sbjct: 120 DPLADVQVINNELALADLESVEKALDKTIR-QAKTGDKKVL--ARKALLERICDHLYDGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
RS+ L+D E I++L LLT+KPI+Y+ANVAE D NPH++ + LAS +
Sbjct: 177 SVRSMALSDDELQEIRELFLLTVKPILYIANVAEDGFED---NPHLDALNTLASAEGAEV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V++ A +EAE+ EL +ER E+L+ LG+ E GL ++R+ Y LLGL TYFT+GEKE +AW
Sbjct: 234 VSVCAAIEAEIVELEEDEREEFLSDLGLDEPGLNRVVRAGYQLLGLETYFTAGEKEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI A +APQAAGVIH+DFE+GFIRAE ++YDDFV ARE G
Sbjct: 294 TIPANASAPQAAGVIHTDFERGFIRAEVISYDDFVKFRGEQGAREAG 340
>gi|299134269|ref|ZP_07027462.1| GTP-binding protein YchF [Afipia sp. 1NLS2]
gi|298591016|gb|EFI51218.1| GTP-binding protein YchF [Afipia sp. 1NLS2]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 239/348 (68%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSEIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SAQIIPTQLTFVDIAGLVKGASKGEGLGNQFLATIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DL+ +EKR++ L KK K D SK + D +E+ + L DG
Sbjct: 121 APLADIETIETELMLADLESLEKRVDNLSKKAKGGDKDSKEQLD----LVERALKLLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + E + + L LLT KP++YV NV E A N V A +
Sbjct: 177 KPARFLERKPEEERTFRMLGLLTSKPVLYVCNVEEGAAAT--GNAFSQSVFEHAKKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EER ++LA+L + E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVVISAKIESEIATLSREERADFLATLELEEAGLDRLIRAGYDLLHLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AYDD+V G A AR+ G
Sbjct: 295 WTITKGTKAPGAAGVIHTDFEKGFIRAETIAYDDYVTLGGEAGARDAG 342
>gi|418605187|ref|ZP_13168516.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU041]
gi|420220767|ref|ZP_14725725.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04008]
gi|420233195|ref|ZP_14737812.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051668]
gi|374402885|gb|EHQ73900.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU041]
gi|394285806|gb|EJE29876.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04008]
gi|394300403|gb|EJE43907.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051668]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 259/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM----ELRILTQIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYMANVGEDEIGDK-DNDKVKAIREYAANEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|416846992|ref|ZP_11906856.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus O46]
gi|323442580|gb|EGB00208.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus O46]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 259/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM----EVRILTTIKEALENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 KPARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +Y D+V G + A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYGDYVQYGGESGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 348 GKEYIMQDGDIVHFRFNV 365
>gi|358451354|ref|ZP_09161788.1| GTP-binding protein YchF [Marinobacter manganoxydans MnI7-9]
gi|357224587|gb|EHJ03118.1| GTP-binding protein YchF [Marinobacter manganoxydans MnI7-9]
Length = 363
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 181/378 (47%), Positives = 263/378 (69%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A NFPFCTIEPN G+VA+PDPRL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIG-AENFPFCTIEPNAGVVAMPDPRLNKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V ++EFVDIAGLV+GAS+GEGLGN+FL++IR+ D+I VVRCFED++++HV K+
Sbjct: 60 PEKVVATTMEFVDIAGLVEGASKGEGLGNQFLANIRQTDAIAHVVRCFEDDNVIHVANKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD+++IN EL +DL+ +EK ++++++ K+ D ++K A+ EK+ L +G
Sbjct: 120 DPASDIEIINTELALADLETVEKAIKRVQRVAKSGDKEAK----AQLEIFEKLLPVLNEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ L+ + I++LCLLT+KP +Y+ANV+E + NPH++ V +A +
Sbjct: 176 KPVRSMNLDKDQMALIRELCLLTVKPTMYIANVSEDGFQN---NPHLDTVRQIAESENAA 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I ++EAE++EL +E+ +L +G+ E GL +IR Y LLGL+TYFT+G KE +A
Sbjct: 233 LVPICNKIEAEISELEDDEKSMFLEEMGMEEPGLDRVIRGGYGLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT++ G TAPQAAGVIH+DFE+GFIRAE V+YDDFV A A++ G W L
Sbjct: 293 WTVKIGATAPQAAGVIHTDFERGFIRAEVVSYDDFVQYNGEAGAKDAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 346 GKEYIVKDGDVIHFRFNV 363
>gi|401681741|ref|ZP_10813637.1| GTP-binding protein YchF [Streptococcus sp. AS14]
gi|400185746|gb|EJO19971.1| GTP-binding protein YchF [Streptococcus sp. AS14]
Length = 371
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SEFVDPMADIETINLELILADLESINKRYTRVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DG AR++ + E+ ++K L LLT KP++YVANV+E ++ADP + +V ++
Sbjct: 174 KPVLEDGLSARTIEFTEEEQKNVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAG 348
>gi|373454656|ref|ZP_09546521.1| GTP-binding protein YchF [Dialister succinatiphilus YIT 11850]
gi|371935662|gb|EHO63406.1| GTP-binding protein YchF [Dialister succinatiphilus YIT 11850]
Length = 368
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/372 (52%), Positives = 257/372 (69%), Gaps = 8/372 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L+ GIVGLPNVGKSTLFNA+ + G A+AANFPFCTIEPNVG+V VPD R++ L+ +
Sbjct: 1 MSTNLQIGIVGLPNVGKSTLFNAITKAG-AEAANFPFCTIEPNVGVVEVPDHRIYDLAAM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K +K PA FVDIAGLV GAS+GEGLGN+FLSHIRE D+I VVRCFED +I HV G
Sbjct: 60 FKPKKTTPAFTRFVDIAGLVAGASKGEGLGNQFLSHIRETDAIAHVVRCFEDGNITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQALM 231
+DP D+D+IN EL +DL+ ++K+ K AK +Q+ +K+ A+ LEK+ AL
Sbjct: 120 SIDPVRDMDIINTELCLADLESVDKKKTK----TAKLAQAGIKQAKADLPVLEKVYDALQ 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G PAR++TL++ + + +K+L L+T+KP++YV N+AE D+ADP +N V A
Sbjct: 176 NGTPARALTLSEDDLEVLKELNLITLKPVLYVLNMAEDDIADPLANKFVQAASAEAEKEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA++E E++EL EE +L LG E GL LIR+ YS+LGL +FT G E
Sbjct: 236 AKWVPISAEIEEEVSELDGEEAKAFLEDLGEEEPGLNRLIRTAYSMLGLINFFTVGPDEC 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL--VSWLHYH 409
++WT+RAG AP+AAG IHSD E+GFIRAE V+YDD +A GS A REKGL V Y
Sbjct: 296 RSWTVRAGTKAPKAAGKIHSDIERGFIRAEIVSYDDLMACGSYNAVREKGLLRVEGKDYI 355
Query: 410 EHLASYKYFHWN 421
YF +N
Sbjct: 356 IQDGDIAYFRFN 367
>gi|84500096|ref|ZP_00998362.1| GTP-binding protein YchF [Oceanicola batsensis HTCC2597]
gi|84392030|gb|EAQ04298.1| GTP-binding protein YchF [Oceanicola batsensis HTCC2597]
Length = 365
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 242/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+G++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLETLAGIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKEIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + I +EL+ +DL+ IEKR L +K K D ++ ++ AA Q L +G
Sbjct: 121 DPVADAETIEMELMLADLESIEKRRANLVRKLKGNDKEAAQQDRLLAAA----QAVLEEG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR V ++ + + L LL+ KP++YV NVAE + A+ N H V +A+ +
Sbjct: 177 RPARVVEVDAEDAKAWNMLQLLSTKPVLYVCNVAEDEAAE--GNAHSAAVAEMAAAQGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E+++L EE +L +G+ E GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISARIEEEISQLDPEEAEMFLGEMGLEEPGLDRLIRAGYDLLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAETVAYDDFVA A ARE G
Sbjct: 295 WTIRTGTAAPQAAGVIHGDFEKGFIRAETVAYDDFVACNGEAGAREAG 342
>gi|319945978|ref|ZP_08020227.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
australis ATCC 700641]
gi|417919222|ref|ZP_12562759.1| GTP-binding protein YchF [Streptococcus australis ATCC 700641]
gi|319747786|gb|EFW00031.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
australis ATCC 700641]
gi|342834352|gb|EGU68626.1| GTP-binding protein YchF [Streptococcus australis ATCC 700641]
Length = 371
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 251/355 (70%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ + KR +++K K KDS AE L+KI
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ +
Sbjct: 174 KPVLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPDSIEYVKQIRDF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AETENAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|315222840|ref|ZP_07864725.1| GTP-binding protein YchF [Streptococcus anginosus F0211]
gi|421490275|ref|ZP_15937649.1| GTP-binding protein YchF [Streptococcus anginosus SK1138]
gi|315188076|gb|EFU21806.1| GTP-binding protein YchF [Streptococcus anginosus F0211]
gi|400373680|gb|EJP26608.1| GTP-binding protein YchF [Streptococcus anginosus SK1138]
Length = 371
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 254/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYTRVEKVARTQKDKDSV------AEFHVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L +G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++
Sbjct: 174 KPVLENGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIEYVQQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|385341311|ref|YP_005895182.1| GTP-binding protein EngD [Neisseria meningitidis M01-240149]
gi|385856607|ref|YP_005903119.1| GTP-binding protein EngD [Neisseria meningitidis NZ-05/33]
gi|325201517|gb|ADY96971.1| GTP-binding protein EngD [Neisseria meningitidis M01-240149]
gi|325207496|gb|ADZ02948.1| GTP-binding protein EngD [Neisseria meningitidis NZ-05/33]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++Y+DF+A G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAG 340
>gi|322392422|ref|ZP_08065882.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
peroris ATCC 700780]
gi|321144414|gb|EFX39815.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
peroris ATCC 700780]
Length = 371
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 252/355 (70%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 DAFVDPLADIDTINLELILADLESINKRYARVEKIARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++
Sbjct: 174 KPVLEDGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIEYVKQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKCGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|222149342|ref|YP_002550299.1| GTP-dependent nucleic acid-binding protein EngD [Agrobacterium
vitis S4]
gi|221736326|gb|ACM37289.1| GTP-binding protein [Agrobacterium vitis S4]
Length = 367
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 252/373 (67%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPR+ L+ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRMQTLATVAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGNKFL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA-KDSQSKLKEDAEKAALEKIQQALMDG 233
DP D + I EL+ +DL+ +E+R E+ +K A KD +S AL+ +Q+ G
Sbjct: 121 DPVGDAETIETELMLADLESLERRTEQTRKRAASKDKESMTLLPVMDGALKLLQE----G 176
Query: 234 KPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR + +L+ ER+ +K L LLT P++YV NVAE+D N H V +A
Sbjct: 177 KPARLLLASLDAEEREVLKSLNLLTSHPVLYVCNVAEADAVT--GNAHTKAVEEMAKAQG 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +EAE+ +LP EE VE+L++LG+ E+GL LIR+ Y LL L TYFT G KET
Sbjct: 235 AETVIISAAIEAEVAQLPDEEAVEFLSALGLEEAGLDRLIRAGYHLLDLITYFTVGPKET 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE--KGLVSWLHYH 409
+AWTI G AP AAGVIH+DFE+GFIRA T+AYDD++ A+E KG Y
Sbjct: 295 RAWTIPRGTKAPAAAGVIHTDFERGFIRAFTIAYDDYITYKGEVGAKEAGKGRDEGKEYV 354
Query: 410 EHLASYKYFHWNS 422
H +F +N+
Sbjct: 355 VHDGDVIHFRFNT 367
>gi|163761603|ref|ZP_02168674.1| GTP-binding protein [Hoeflea phototrophica DFL-43]
gi|162281199|gb|EDQ31499.1| GTP-binding protein [Hoeflea phototrophica DFL-43]
Length = 367
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 187/350 (53%), Positives = 246/350 (70%), Gaps = 9/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPD RL L+ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDTRLKKLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGNKFL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRIAFVDIAGLVRGASKGEGLGNKFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D D I EL+ SDL+ +E+R E+ K+ AKD +S +AAL+ +Q DG
Sbjct: 121 DPVGDADTIETELMISDLESLERRTEQTRKRAAAKDKESLTVLPMMEAALKLLQ----DG 176
Query: 234 KPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP R++ TL D + + L LLT P++YV NV+E+D A N H V +A++
Sbjct: 177 KPVRTMLKTLADEDLKILHGLNLLTSHPVLYVCNVSEADAAT--GNAHTEAVAKMAAEQG 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ + +SA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ YSLL L TYFT G KET
Sbjct: 235 AESIVVSAAIESEVAQLPDEESEEFLAALGLEEAGLDRLIRAGYSLLDLITYFTVGPKET 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G AP AAGVIH+DFE+GFIRA T+AYDD+V G A+E G
Sbjct: 295 RAWTIERGTKAPGAAGVIHTDFERGFIRAFTIAYDDYVNLGGEVPAKEAG 344
>gi|374332780|ref|YP_005082964.1| translation-associated GTPase [Pseudovibrio sp. FO-BEG1]
gi|359345568|gb|AEV38942.1| translation-associated GTPase [Pseudovibrio sp. FO-BEG1]
Length = 366
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/352 (53%), Positives = 251/352 (71%), Gaps = 14/352 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR ++ +++
Sbjct: 1 MGFQCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGDVAVPDPRQSKIAAIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I V+RCFE++DI HV+GK+
Sbjct: 61 SKEIIPTRLTFVDIAGLVRGASKGEGLGNQFLANIREVDAIAHVLRCFENDDITHVDGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQA---L 230
DP +D + + EL+ SD++ +EKR+ L KK K+ D + KAAL ++QA L
Sbjct: 121 DPIADAETVETELMVSDMESLEKRIAPLEKKAKSGDKDA-------KAALPIMEQALAIL 173
Query: 231 MDGKPARSVTLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
DGKP R++ L D E +K L LLT KP++YV NV E + AD G N +V +A +
Sbjct: 174 QDGKPVRALGLTDPEEIKQLKMLNLLTSKPVLYVCNV-EEESADKG-NSLSAKVQAMAEE 231
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISA +EAE+ +L EE+ EY+A +G+ E GL LIR+ Y LL L TYFT+G K
Sbjct: 232 QGAASVVISAAIEAEIAQLEDEEQREYMADMGLEEPGLDRLIRAGYGLLELITYFTAGPK 291
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
ET+AWTI AG APQAAGVIH+DFE+GFIRA+T+AY+D+V G A+E G
Sbjct: 292 ETRAWTIVAGTKAPQAAGVIHTDFERGFIRAQTIAYNDYVELGGETPAKEAG 343
>gi|399924190|ref|ZP_10781548.1| GTP-binding protein YchF [Peptoniphilus rhinitidis 1-13]
Length = 362
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 193/348 (55%), Positives = 258/348 (74%), Gaps = 8/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PF TIEPNVG+V VPD RL VL+ LS S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTSAG-AEAANYPFATIEPNVGVVNVPDERLDVLAKLSNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +I+HV+G +DP
Sbjct: 60 KVVHTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDENIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+Q+E R K +KK +A+ S +K E+ LEKI+ AL +GK
Sbjct: 120 IRDIENINLELIFSDLEQVENRYGKVVKKSRAEKSLAK-----ERDLLEKIKTALEEGKS 174
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
AR V +++ E IK LL+ KP+IYV NVAE +L++ N +V +V A + V
Sbjct: 175 ARKVEIDEEEEKIIKNYALLSAKPVIYVCNVAEEELSND-DNEYVKKVREYAENAGDEVV 233
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
ISA++EAE+ L +E+ +L LG+ SGL LI+S+Y LLGL ++ T+GE ET+AWT
Sbjct: 234 VISAEIEAEIASLDEDEKELFLEELGLDSSGLDKLIKSSYKLLGLISFLTTGEMETRAWT 293
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G AP AAG IH+D E+GFI+A+TV+Y D V +GS+AAAREKGL+
Sbjct: 294 IKRGSKAPTAAGKIHTDMERGFIKADTVSYKDLVDSGSVAAAREKGLI 341
>gi|344340956|ref|ZP_08771879.1| GTP-binding protein YchF [Thiocapsa marina 5811]
gi|343799201|gb|EGV17152.1| GTP-binding protein YchF [Thiocapsa marina 5811]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 183/347 (52%), Positives = 249/347 (71%), Gaps = 7/347 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+V +PDPRL VL+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKATIA-AENYPFCTIDPNVGVVPLPDPRLDVLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P +++FVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE++D+VHV G+V
Sbjct: 60 PQRVIPTTMQFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFENDDVVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++VIN EL +DL+ + K +++ ++ K K+ A KA LE+I+ L GK
Sbjct: 120 DPLDDIEVINTELALADLESVTKALDRAER-MVKTGDKKIL--ARKAVLEQIRDQLDAGK 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P R++ L+ ++ L LLT KP +Y+ANVAE D NP +++V+ LA + +
Sbjct: 177 PVRAMGLDAEALREVRDLFLLTAKPTLYIANVAEDGFVD---NPILDKVVALAGEEGAEV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V + A +EAE+ +L +ER E+LA LG++E GL ++R+ Y LLGL TYFT+GEKE +AW
Sbjct: 234 VPVCAAIEAEIFDLEDQERDEFLAELGLTEPGLNRVVRAGYRLLGLETYFTAGEKEVRAW 293
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI AG+ APQAA VIH+DFE+GFIRAE +AYDDFVA A+E G
Sbjct: 294 TIPAGVRAPQAAAVIHTDFERGFIRAEVIAYDDFVACKGEQGAKEAG 340
>gi|291543763|emb|CBL16872.1| GTP-binding protein YchF [Ruminococcus champanellensis 18P13]
Length = 364
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 255/348 (73%), Gaps = 6/348 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ N A++AN+PFCTIE NVGIV+VPD RL L+ + +
Sbjct: 1 MKLGMVGLPNVGKSTLFNALT-NAGAESANYPFCTIEKNVGIVSVPDERLDKLAEMYHPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGNKFL+ IREVD+I+ VVRCFE+ DI+HV+G+++P
Sbjct: 60 KFTPATLEFVDIAGLVKGASKGEGLGNKFLADIREVDAIVHVVRCFENIDIIHVDGEINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+++ KK D K AE LE+++ + +G A
Sbjct: 120 ARDIETINLELIFSDIEMLERRIDRAKKASKGDK----KYLAEVDFLERLKAFMEEGHSA 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASDLQSGRV 295
R+ + E + +K LL+ KP+IY AN+ E+D + +NPH +V +A S +
Sbjct: 176 RAFDFTEDELEMLKSTPLLSAKPVIYAANLCEADFVHNIDTNPHYKKVCEIAEAEHSAVL 235
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I AQ+EAE++++ E++ +L+ LG+ SGLG +I+ YSLLGL +Y T+G+ E +AWT
Sbjct: 236 PICAQMEAEISDMSDEDKKLFLSELGLEVSGLGRIIQEGYSLLGLISYLTAGQPEVRAWT 295
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
I+ G APQAAG IH+DFEKGFIRAE V++DD +A G++AAA+EKGLV
Sbjct: 296 IKKGTKAPQAAGKIHTDFEKGFIRAEVVSFDDLMACGTMAAAKEKGLV 343
>gi|315612156|ref|ZP_07887071.1| GTP-binding protein YchF [Streptococcus sanguinis ATCC 49296]
gi|331265442|ref|YP_004325072.1| putative GTP-binding protein [Streptococcus oralis Uo5]
gi|417940547|ref|ZP_12583835.1| GTP-binding protein YchF [Streptococcus oralis SK313]
gi|419783075|ref|ZP_14308868.1| GTP-binding protein YchF [Streptococcus oralis SK610]
gi|315315717|gb|EFU63754.1| GTP-binding protein YchF [Streptococcus sanguinis ATCC 49296]
gi|326682114|emb|CBY99730.1| putative GTP-binding protein [Streptococcus oralis Uo5]
gi|343389428|gb|EGV02013.1| GTP-binding protein YchF [Streptococcus oralis SK313]
gi|383182619|gb|EIC75172.1| GTP-binding protein YchF [Streptococcus oralis SK610]
Length = 371
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIEYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|406026457|ref|YP_006725289.1| GTP-binding translation factor YchF [Lactobacillus buchneri CD034]
gi|405124946|gb|AFR99706.1| GTP-binding translation factor YchF [Lactobacillus buchneri CD034]
Length = 366
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 250/348 (71%), Gaps = 6/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDKRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D INLEL +DLD + KR+ K+++ K D ++K AE A LEKI+ L DG
Sbjct: 120 DPLDDIDTINLELGIADLDSVNKRLGKVQRAAKGNDKEAK----AELAVLEKIKPVLEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
RS+ ++ E+ +K L LLT KP++YVAN+AE D+ADP ++ + E+ A+ +
Sbjct: 176 GSVRSIDFDEDEQKIVKGLFLLTSKPVLYVANIAEDDMADPENSKYFPEIKEFAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ++A E E+ +L +E+ E+L + GV E GL LIR++Y LLGL+T+FT+G KET+A
Sbjct: 236 AIAVAAGPEEEIAQLDDDEKAEFLEAEGVKEPGLNRLIRASYKLLGLQTFFTAGGKETRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT + G APQAAG+IHSDFE+GFIRAE +A+DD + AA +E G
Sbjct: 296 WTFKKGTKAPQAAGIIHSDFERGFIRAEVMAFDDLDKLETPAAVKEAG 343
>gi|313889527|ref|ZP_07823173.1| GTP-binding protein YchF [Streptococcus pseudoporcinus SPIN 20026]
gi|416852391|ref|ZP_11909536.1| GTP-binding protein YchF [Streptococcus pseudoporcinus LQ 940-04]
gi|313122139|gb|EFR45232.1| GTP-binding protein YchF [Streptococcus pseudoporcinus SPIN 20026]
gi|356739880|gb|EHI65112.1| GTP-binding protein YchF [Streptococcus pseudoporcinus LQ 940-04]
Length = 371
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/355 (52%), Positives = 251/355 (70%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLNKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DLD I KR +++K K KDS AE L+KI
Sbjct: 120 DAFVDPMADIDTINLELILADLDSINKRYARVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ D E +K L LLT KP++YVANV E +ADP +V ++
Sbjct: 174 KPVLEDGKSARTIDFTDEEEKVVKGLFLLTTKPVLYVANVDEDRVADPDDIDYVKQIRAF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A + V ISA+ E E++EL +++VE+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 ADTENAEVVVISARAEEEISELDDDDKVEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|33594042|ref|NP_881686.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
pertussis Tohama I]
gi|384205345|ref|YP_005591084.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
pertussis CS]
gi|33564116|emb|CAE43388.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332383459|gb|AEE68306.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
pertussis CS]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/350 (52%), Positives = 240/350 (68%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++VI EL +DL EK R K + KD+Q + LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLV------TVLEKCIAQLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A
Sbjct: 174 QAKPVRGLDLSDEEQTLIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE
Sbjct: 231 APMVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G
Sbjct: 291 RAWTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG 340
>gi|349687299|ref|ZP_08898441.1| GTP-binding protein YchF [Gluconacetobacter oboediens 174Bp2]
Length = 364
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 246/348 (70%), Gaps = 8/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETASAQAANYPFCTIEPNVGRVAVPDARLAELARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKILPTSLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D ++I EL+ +DLD +EKR+ L KK + D ++ A+ +E + +AL +G
Sbjct: 121 DPIRDAEIIETELMLADLDSLEKRIVALQKKARGNDREAA----AQVELMEPLIEALREG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR + + + +++++L L+T KP++YV NV E A N V A + +
Sbjct: 177 RPARK-AIPEGQEEAVRRLQLMTTKPVLYVCNVDEGSAAT--GNEFSERVRARAEEEGAA 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA +EAE+++L +E+RVE+L LG+ +SGL +I + Y LLGL TYFT G KET+A
Sbjct: 234 MVVVSAAIEAEVSQLGAEDRVEFLEGLGLKDSGLDRVIAAGYRLLGLNTYFTVGPKETRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G APQAA VIH+DFE+GFI ET+AYDD++A A ARE G
Sbjct: 294 WTITEGTKAPQAAAVIHNDFERGFIACETIAYDDYIACNGEAGAREAG 341
>gi|167759077|ref|ZP_02431204.1| hypothetical protein CLOSCI_01424 [Clostridium scindens ATCC 35704]
gi|336422094|ref|ZP_08602248.1| GTP-binding protein YchF [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663195|gb|EDS07325.1| GTP-binding protein YchF [Clostridium scindens ATCC 35704]
gi|336009384|gb|EGN39378.1| GTP-binding protein YchF [Lachnospiraceae bacterium 5_1_57FAA]
Length = 366
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 255/350 (72%), Gaps = 8/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G ++P
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDGNIVHVDGSINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K K A++ ++ K E A LEKI+ L +G+ A
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTTK-VARNDKTAAK---ELALLEKIKAHLEEGRLA 175
Query: 237 RSVTLNDFERD--SIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 293
++ + E + + LLT KP+IY ANVAE DLAD G+ N V V A QS
Sbjct: 176 KTFEGAEDEEELAWLTGYNLLTYKPVIYAANVAEDDLADDGAGNVGVQAVREYAGKEQSE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +A
Sbjct: 236 VFVVCAQIEQEIAELDDDEKKMFLEDLGLEESGLEKLIKASYRLLGLISYLTAGEPEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G APQAAG IH+DFE+GFIRAE VAYDD + GS AA+EKGL+
Sbjct: 296 WTITKGTKAPQAAGKIHTDFERGFIRAEVVAYDDLIECGSHNAAKEKGLI 345
>gi|440227380|ref|YP_007334471.1| GTP-binding protein YchF [Rhizobium tropici CIAT 899]
gi|440038891|gb|AGB71925.1| GTP-binding protein YchF [Rhizobium tropici CIAT 899]
Length = 367
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/350 (52%), Positives = 246/350 (70%), Gaps = 9/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKELIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P +D + I EL+ +DL+ +E+R E+ K+ +KD +S A+L +Q+ G
Sbjct: 121 NPVADAETIETELMLADLESLERRTEQTRKRATSKDKESMAMLPIMDASLALLQE----G 176
Query: 234 KPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP R++ L+ E +K L LLT P++YV NVAE D A N H V +A +
Sbjct: 177 KPVRTLLSKLDAEETRILKGLNLLTSHPVLYVCNVAEGDAAT--GNEHTAAVAAMAKEQN 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
S V ISA +EAE+ +LP EE E+L++LG+ E+GL LIR+ Y LL L TYFT G KET
Sbjct: 235 SEVVIISAAIEAEVAQLPDEEAKEFLSALGLDEAGLDRLIRAGYKLLHLITYFTVGPKET 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++A A+E G
Sbjct: 295 RAWTIETGTKAPQAAGVIHSDFERGFIRANTIAYDDYIAYNGETGAKEAG 344
>gi|358063114|ref|ZP_09149737.1| GTP-binding protein YchF [Clostridium hathewayi WAL-18680]
gi|356698675|gb|EHI60212.1| GTP-binding protein YchF [Clostridium hathewayi WAL-18680]
Length = 365
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 252/349 (72%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDERLKLLGDLYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDANVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ I+LEL+FSD++ +++R+ K K A + +S K E L+ ++ L DGK A
Sbjct: 120 LRDIETIDLELIFSDIEILDRRIAKTAKA-ANNDKSLAK---ELVVLKDMKAHLEDGKLA 175
Query: 237 RSVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
RS +D + + I L LLT KP+I+ ANV+E DLAD G +NP+V EV A + S
Sbjct: 176 RSFESDDEDAIAFINSLNLLTWKPVIFAANVSEDDLADDGENNPYVQEVRKFAEENASQV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I AQ+E E+ EL +E+ +L LG+ ESGL LI ++Y LLGL +Y TSGE ET+AW
Sbjct: 236 FVICAQIEQEIAELEEDEKKMFLEELGLKESGLEKLIAASYELLGLISYLTSGEDETRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFIRAE V Y D + + AA+EKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHTDFERGFIRAEVVNYQDLLDCKTYPAAKEKGLV 344
>gi|24372768|ref|NP_716810.1| GTP-binding and nucleic acid-binding protein YchF [Shewanella
oneidensis MR-1]
gi|24346846|gb|AAN54255.1| GTP-binding and nucleic acid-binding protein YchF [Shewanella
oneidensis MR-1]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPDPRL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDPRLDALAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D++IVHV KV
Sbjct: 60 PQRVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFDDDNIVHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D++VIN EL +DLD +E+ R +K KG KD++ +++ LEK++ L
Sbjct: 120 DPARDIEVINTELALADLDSLERAVIRQQKRAKGGDKDAKFEVE------VLEKMRPVLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ K RS+ L+ E +++ L LT+KP +Y+ANVAE +NPH++ V +A
Sbjct: 174 EAKMLRSMDLSKEELEAVAYLNFLTLKPTMYIANVAEDGF---DNNPHLDAVRAIAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V++ A +E+EL E+ +EER E++A LG+ E GL +IR+ Y LL L+TYFT+G KE
Sbjct: 231 AIVVSVCAAIESELAEMDAEERDEFMADLGLEEPGLDRVIRAGYQLLSLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+ G TAPQAAGVIH+DFE+GFIRA+ VA+DDF+A A A+E G
Sbjct: 291 RAWTVSVGATAPQAAGVIHTDFERGFIRAQVVAFDDFIAYKGEAGAKEAG 340
>gi|225077234|ref|ZP_03720433.1| hypothetical protein NEIFLAOT_02289 [Neisseria flavescens
NRL30031/H210]
gi|224951378|gb|EEG32587.1| hypothetical protein NEIFLAOT_02289 [Neisseria flavescens
NRL30031/H210]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NV+E + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAG 340
>gi|228474173|ref|ZP_04058910.1| GTP-binding protein YchF [Staphylococcus hominis SK119]
gi|314935175|ref|ZP_07842528.1| GTP-binding protein YchF [Staphylococcus hominis subsp. hominis
C80]
gi|418618856|ref|ZP_13181708.1| GTP-binding protein YchF [Staphylococcus hominis VCU122]
gi|228271868|gb|EEK13205.1| GTP-binding protein YchF [Staphylococcus hominis SK119]
gi|313656510|gb|EFS20249.1| GTP-binding protein YchF [Staphylococcus hominis subsp. hominis
C80]
gi|374826425|gb|EHR90322.1| GTP-binding protein YchF [Staphylococcus hominis VCU122]
Length = 365
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 248/348 (71%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDTRLNKLTEMVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L +I++AL +G
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPRIEKMARQKDKTAEM----EFRILSRIKEALEEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 176 NPVRSLDFNEEDQKYVNQAQLLTSKKMLYIANVGEDEIGDD-ENDKVKTIREYAAKEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT R GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G
Sbjct: 295 WTFRQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEHGGEQGAKEAG 342
>gi|238923804|ref|YP_002937320.1| translation-associated GTPase [Eubacterium rectale ATCC 33656]
gi|238875479|gb|ACR75186.1| translation-associated GTPase [Eubacterium rectale ATCC 33656]
gi|291528019|emb|CBK93605.1| GTP-binding protein YchF [Eubacterium rectale M104/1]
Length = 366
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 255/351 (72%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G VDP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K E +E ++ L DGK A
Sbjct: 120 ARDIETINLELIFSDVEILDRRIAKIAK-QARMDKTLAK---ELELVEAVKAHLEDGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
R+ + D E + K LLT KP IY ANV+E DLAD G SNPHV +V +A + +
Sbjct: 176 RTFEVPDDEDAQLWFKGYNLLTAKPTIYAANVSEDDLADDGASNPHVAKVREMAKEEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL +L +E+ EYL LGV SGL L+ ++YSLLGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELADLDEDEKKEYLEDLGVESSGLDKLVAASYSLLGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLAAAREKGIVG 346
>gi|83943892|ref|ZP_00956349.1| GTP-binding protein YchF [Sulfitobacter sp. EE-36]
gi|83845139|gb|EAP83019.1| GTP-binding protein YchF [Sulfitobacter sp. EE-36]
Length = 365
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/352 (53%), Positives = 246/352 (69%), Gaps = 15/352 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDSRLDKLAAIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDS--QSKLKEDAEKAALEKIQQA 229
DP +D + I+ EL+ +DL+ IEKR L KG KD+ Q +L L Q+A
Sbjct: 121 DPVADAETIDTELMLADLESIEKRRAGLVRKIKGNDKDAAQQDRL--------LAAAQEA 172
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
+ +GKPAR+V ++ + + + L LLT KP++YV NV ES+ A+ N +V +A+
Sbjct: 173 IENGKPARTVEVDADDAKAWRMLQLLTTKPVLYVCNVGESEAAE--GNALSAKVAEMAAA 230
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISAQ+E E+++L EE +L +G+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 231 QGNSHVVISAQIEEEISQLEPEEASMFLDEMGLEEAGLDRLIRAGYELLHLETYFTVGPK 290
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWTI+AG +AP+AAGVIH DFEKGFIRAET+AYDDFVA G A+E G
Sbjct: 291 EARAWTIKAGTSAPKAAGVIHGDFEKGFIRAETIAYDDFVALGGEGPAKEAG 342
>gi|33599894|ref|NP_887454.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
bronchiseptica RB50]
gi|33567491|emb|CAE31404.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/350 (52%), Positives = 240/350 (68%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIINVVRCFEDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++VI EL +DL EK R K + KD+Q + LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLV------TVLEKCIAQLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A
Sbjct: 174 QAKPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE
Sbjct: 231 APMVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G
Sbjct: 291 RAWTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG 340
>gi|388567586|ref|ZP_10154017.1| hypothetical protein Q5W_2354 [Hydrogenophaga sp. PBC]
gi|388265191|gb|EIK90750.1| hypothetical protein Q5W_2354 [Hydrogenophaga sp. PBC]
Length = 363
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/350 (53%), Positives = 246/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPN G+V VPDPRL L+ + +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNTGVVEVPDPRLAQLAKVVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA VEFVDIAGLV GAS+GEGLGN+FL+HIRE D+ + VVRCFED +++HV GKV
Sbjct: 60 PQRIVPAIVEFVDIAGLVAGASKGEGLGNQFLAHIRETDATVNVVRCFEDPNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++VI EL +DL +EK R +K + K++Q L LEK Q AL
Sbjct: 120 DPIADIEVIQTELCLADLSTVEKSVQRAQKTARAGDKEAQKLL------VVLEKCQAALN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+ +P R++ L+ +R IK L L+T KP ++VANVAE + NP ++ + A Q
Sbjct: 174 EARPVRTLDLSKEDRALIKPLFLITAKPAMFVANVAEDGFEN---NPLLDRLKAYAEAQQ 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A++EAE+ E+ E+R +L +G+ E GL LIR+ Y LLGL+TYFT+GEKE
Sbjct: 231 APVVAICAKLEAEMAEMNDEDRQMFLEEMGLEEPGLHRLIRAAYGLLGLQTYFTAGEKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G T PQAAGVIH+DFEKG+IRA+T+A+DD++A G A+E G
Sbjct: 291 RAWTIHVGDTGPQAAGVIHTDFEKGYIRAQTIAFDDYIAHGGEQGAKEAG 340
>gi|306826190|ref|ZP_07459525.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|322375219|ref|ZP_08049733.1| GTP-binding protein YchF [Streptococcus sp. C300]
gi|358465163|ref|ZP_09175114.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 058 str.
F0407]
gi|414157557|ref|ZP_11413854.1| GTP-binding protein YchF [Streptococcus sp. F0441]
gi|417794545|ref|ZP_12441795.1| GTP-binding protein YchF [Streptococcus oralis SK255]
gi|421488194|ref|ZP_15935587.1| GTP-binding protein YchF [Streptococcus oralis SK304]
gi|304431666|gb|EFM34647.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|321280719|gb|EFX57758.1| GTP-binding protein YchF [Streptococcus sp. C300]
gi|334269068|gb|EGL87498.1| GTP-binding protein YchF [Streptococcus oralis SK255]
gi|357065921|gb|EHI76091.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 058 str.
F0407]
gi|400368940|gb|EJP21946.1| GTP-binding protein YchF [Streptococcus oralis SK304]
gi|410871993|gb|EKS19938.1| GTP-binding protein YchF [Streptococcus sp. F0441]
Length = 371
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|289166913|ref|YP_003445180.1| GTP-binding protein [Streptococcus mitis B6]
gi|288906478|emb|CBJ21308.1| GTP-binding protein [Streptococcus mitis B6]
Length = 371
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAG 348
>gi|152997609|ref|YP_001342444.1| GTP-dependent nucleic acid-binding protein EngD [Marinomonas sp.
MWYL1]
gi|150838533|gb|ABR72509.1| GTP-binding protein YchF [Marinomonas sp. MWYL1]
Length = 363
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 181/348 (52%), Positives = 254/348 (72%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + ++EFVDIAGLV+GAS+GEGLGNKFL++IRE D+I VVRCFED +++HV+ V
Sbjct: 60 PERVLATTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALMDG 233
+PK D++VINLEL+F+D++ I+K++ + AK+++S KE A KA LE I++ L +G
Sbjct: 120 NPKLDIEVINLELIFADIESIDKQLFR----TAKNAKSGNKEAIAHKAFLESIKEHLENG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P RS+ ++D ++ ++ L LLT KP +Y+ANVAE + NPH+++V +A +
Sbjct: 176 LPVRSMEMSDEQKKEVRSLHLLTTKPTMYIANVAEDGFEN---NPHLDQVRAIAEAEGAM 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I Q+EAE++EL +EE E+L +G+ E GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVPICNQLEAEISELDTEEMQEFLDEMGMEEPGLDRVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT++ G T PQAAGVIH+DFEKGFIRAE ++Y+DF+ + A+E G
Sbjct: 293 WTVKQGATGPQAAGVIHTDFEKGFIRAEVISYNDFIQYKGESGAKEAG 340
>gi|83953532|ref|ZP_00962254.1| GTP-binding protein YchF [Sulfitobacter sp. NAS-14.1]
gi|83842500|gb|EAP81668.1| GTP-binding protein YchF [Sulfitobacter sp. NAS-14.1]
Length = 368
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 188/352 (53%), Positives = 246/352 (69%), Gaps = 15/352 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 4 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDSRLDKLAAIAG 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV G+V
Sbjct: 64 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDS--QSKLKEDAEKAALEKIQQA 229
DP +D + I+ EL+ +DL+ IEKR L KG KD+ Q +L L Q+A
Sbjct: 124 DPVADAETIDTELMLADLESIEKRRAGLVRKIKGNDKDAAQQDRL--------LAAAQEA 175
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
+ +GKPAR+V ++ + + + L LLT KP++YV NV ES+ A+ N +V +A+
Sbjct: 176 IENGKPARTVEVDADDAKAWRMLQLLTTKPVLYVCNVGESEAAE--GNALSAKVAEMAAA 233
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISAQ+E E+++L EE +L +G+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 234 QGNSHVVISAQIEEEISQLEPEEASMFLDEMGLEEAGLDRLIRAGYELLHLETYFTVGPK 293
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWTI+AG +AP+AAGVIH DFEKGFIRAET+AYDDFVA G A+E G
Sbjct: 294 EARAWTIKAGTSAPKAAGVIHGDFEKGFIRAETIAYDDFVALGGEGPAKEAG 345
>gi|410418670|ref|YP_006899119.1| hypothetical protein BN115_0874 [Bordetella bronchiseptica MO149]
gi|412339836|ref|YP_006968591.1| hypothetical protein BN112_2537 [Bordetella bronchiseptica 253]
gi|427813137|ref|ZP_18980201.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|427821053|ref|ZP_18988116.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427823704|ref|ZP_18990766.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|408445965|emb|CCJ57630.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|408769670|emb|CCJ54454.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
gi|410564137|emb|CCN21678.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|410572053|emb|CCN20308.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410588969|emb|CCN04032.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 363
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/350 (52%), Positives = 240/350 (68%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++VI EL +DL EK R K + KD+Q + LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLV------TVLEKCIAQLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A
Sbjct: 174 QAKPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE
Sbjct: 231 APMVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G
Sbjct: 291 RAWTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG 340
>gi|401683905|ref|ZP_10815790.1| GTP-binding protein YchF [Streptococcus sp. BS35b]
gi|419780874|ref|ZP_14306712.1| GTP-binding protein YchF [Streptococcus oralis SK100]
gi|383184825|gb|EIC77333.1| GTP-binding protein YchF [Streptococcus oralis SK100]
gi|400186945|gb|EJO21150.1| GTP-binding protein YchF [Streptococcus sp. BS35b]
Length = 371
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 253/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA----LEKI 226
VDP +D+D INLEL+ +DL+ + KR +++K ++ ++D E A L+KI
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK------MARTQKDKESVAEFNILQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++
Sbjct: 174 KPVLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|451817909|ref|YP_007454110.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783888|gb|AGF54856.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 365
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 249/347 (71%), Gaps = 7/347 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+ +E+RMEK +K ++ D +K E +E+I++ L KP
Sbjct: 120 IRDIETINLELIFSDLEVLERRMEKSIKLARSGDKTAKF----EYGVMERIKEHLEASKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
R++ ++D E D IK L L+T KP++Y N++E D+ + N +V +V A+ S
Sbjct: 176 VRTLEVSDEEEDFIKGLFLITSKPVLYACNISEDDVMEGNFDNDYVKKVKEYAASENSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ +SA++E EL+ L EE+ E L G+ ESGL LI ++Y LLGL ++ T+G +E +AW
Sbjct: 236 MVVSAKIEEELSGLEDEEKAEMLGEYGLDESGLDKLIEASYKLLGLMSFLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI+ G AP AAG IHSD E+GFIRAE V Y+D V GS AAA+EKG
Sbjct: 296 TIKRGTKAPAAAGKIHSDIERGFIRAEVVGYEDLVECGSEAAAKEKG 342
>gi|421748003|ref|ZP_16185652.1| GTP-binding protein YchF [Cupriavidus necator HPC(L)]
gi|409773310|gb|EKN55132.1| GTP-binding protein YchF [Cupriavidus necator HPC(L)]
Length = 363
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 247/348 (70%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLKALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GKV
Sbjct: 60 PERVVPATVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDPNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++VIN EL +DL +EK + + +K +A D +++ A LEK Q L
Sbjct: 120 DPLSDIEVINTELALADLATVEKALARYVKPARAGDKEAQRL----VAVLEKAQAVLDQA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K R++ L E D+++ CL+T KP +YVANV E + NPH++ V A +S
Sbjct: 176 KAVRTLDLAPEEWDALRPFCLITAKPTMYVANVREDGFEN---NPHLDAVRKYAETTKSP 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +EAE+ +L E++ +LA LG+ E GL +IR+ + LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAAIEAEIADLEDEDKAVFLADLGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAP+AAGVIH+DFE+GFIRA+T+A++DF+A A+E G
Sbjct: 293 WTIHVGDTAPKAAGVIHTDFERGFIRAQTIAFEDFIAFKGEQGAKEAG 340
>gi|148358611|ref|YP_001249818.1| GTP-dependent nucleic acid-binding protein [Legionella pneumophila
str. Corby]
gi|296108299|ref|YP_003620000.1| GTP binding protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280384|gb|ABQ54472.1| GTP-dependent nucleic acid-binding protein [Legionella pneumophila
str. Corby]
gi|295650201|gb|ADG26048.1| GTP binding protein [Legionella pneumophila 2300/99 Alcoy]
Length = 363
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 249/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVIHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233
DP SD++VIN EL +D++ +EK + K+ K+S+S KE E LEKI+ L G
Sbjct: 120 DPLSDIEVINTELALADMETLEKSLLKV----GKNSKSGNKEAIFELKTLEKIKAHLDTG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
P R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS +
Sbjct: 176 YPVRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVKALASQENAS 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G TAPQAAGVIH+DFEKGFIRAE ++Y+DF+ G A+E G
Sbjct: 293 WTIRKGATAPQAAGVIHTDFEKGFIRAEVISYEDFIRFGGEQGAKEAG 340
>gi|254486367|ref|ZP_05099572.1| GTP-binding protein YchF [Roseobacter sp. GAI101]
gi|214043236|gb|EEB83874.1| GTP-binding protein YchF [Roseobacter sp. GAI101]
Length = 368
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 243/352 (69%), Gaps = 15/352 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 4 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDKLAEIAK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV G+V
Sbjct: 64 SKSIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDS--QSKLKEDAEKAALEKIQQA 229
DP +D + I+ EL+ +DL+ IEKR L KG KD+ Q +L L Q A
Sbjct: 124 DPVADAETIDTELMLADLESIEKRRAGLVRKIKGNDKDAAQQDRL--------LALAQAA 175
Query: 230 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
+ DGKPAR+VT+++ + + + L LLT KP++YV NV ES+ A+ N V +A+
Sbjct: 176 IEDGKPARTVTIDEDDAKAWRMLQLLTTKPVLYVCNVGESEAAE--GNALSTAVGEMAAA 233
Query: 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
+ V ISAQ+E E+++L EE +L +G+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 234 QGNSHVIISAQIEEEISQLDPEEADMFLEEMGLKEAGLNRLIRAGYELLHLETYFTVGPK 293
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWTI+ G +AP+AAGVIH DFEKGFIRAET+AYDDFV G A+E G
Sbjct: 294 EARAWTIKHGTSAPKAAGVIHGDFEKGFIRAETIAYDDFVTLGGEGPAKEAG 345
>gi|302038467|ref|YP_003798789.1| GTP-dependent nucleic acid-binding protein EngD [Candidatus
Nitrospira defluvii]
gi|300606531|emb|CBK42864.1| GTP-dependent nucleic acid-binding protein EngD [Candidatus
Nitrospira defluvii]
Length = 363
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MS++ GIVGLPNVGKSTLFNA+ ++G A A N+PFCTIEPN+GIV VPD R+ L+ + K
Sbjct: 1 MSVKCGIVGLPNVGKSTLFNALTKSGIA-AENYPFCTIEPNIGIVEVPDARMQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ A+ EFVDIAGLV GAS+GEGLGN+FL++IRE D I+ VVRCFED+++VHV GKV
Sbjct: 60 PQRMQYATTEFVDIAGLVAGASKGEGLGNQFLANIRETDGIVNVVRCFEDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD+ I EL +DL +EK E KL + KD+ +KL E L ++ L
Sbjct: 120 DPISDIATIVTELALADLTTVEKAQERNVKLVRSGDKDA-AKLGE-----LLVQVAACLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR++ L+ +R +K LCLLTMKP++YVANVAE + NP + V A+
Sbjct: 174 EGKPARTLKLDPAQRALLKPLCLLTMKPVMYVANVAEKGFTN---NPLLTRVEEYAAHEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A +E+E+ L EE+ E+LA +G++E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAICAALESEIAVLSDEEKREFLADIGMNEPGLNRLIRAAYQLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH DFEKGFIRAE + Y+DF+A A A+EKG
Sbjct: 291 RAWTIHIGDTAPQAAGVIHGDFEKGFIRAEVIGYNDFIACKGEAGAKEKG 340
>gi|390629298|ref|ZP_10257294.1| GTP-binding protein YchF [Weissella confusa LBAE C39-2]
gi|390485500|emb|CCF29642.1| GTP-binding protein YchF [Weissella confusa LBAE C39-2]
Length = 367
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/347 (53%), Positives = 244/347 (70%), Gaps = 3/347 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQELVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+V++I+ VVR F+D+DI HVNGKV
Sbjct: 60 ADKIVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVNGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ INLELV +DL+ +EKR +K + + E L K++ L +GK
Sbjct: 120 DPIDDINTINLELVLADLEAVEKRYATTEKKAKQAKDKDAAAEFE--VLAKLKPVLEEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ N+ E+ ++ LLT KP++YVANVAE D+ADP ++ + ++ A+ +
Sbjct: 178 PARSIDWNEDEQKIVRGFFLLTSKPVLYVANVAEDDMADPEASKYFQQIKEYAAAENADV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA+ E EL + E++ E + G++E GL LIRS Y LL LRT+FT+G KET+AW
Sbjct: 238 IGISARAEEELAGMDDEDKAELMELQGITEPGLNRLIRSAYHLLDLRTFFTAGGKETRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T RAGM APQ AGVIHSDFE+GFIRAETVA+ D GS+ A +E G
Sbjct: 298 TFRAGMKAPQVAGVIHSDFERGFIRAETVAFADLDEYGSMKAVKEAG 344
>gi|325291435|ref|YP_004267616.1| GTP-binding protein YchF [Syntrophobotulus glycolicus DSM 8271]
gi|324966836|gb|ADY57615.1| GTP-binding protein YchF [Syntrophobotulus glycolicus DSM 8271]
Length = 366
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/377 (49%), Positives = 254/377 (67%), Gaps = 11/377 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+LR GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MALRVGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGIVHVPDDRLKQLAKIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA+VEFVDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCF+D ++VHV G +
Sbjct: 60 PDRIVPAAVEFVDIAGLVRGASKGEGLGNQFLSHIREVDAIVHVVRCFQDENVVHVEGFI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ I +EL+ +D+D +++R KL G K K KE E+ L K+ + G
Sbjct: 120 DPVRDIETIKMELILADMDAVQRRQAKLT-GMIKSGDKKAKE--EQTVLTKLMEEFDKGI 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
A + E++ +K + LLT+KP+IY ANV E + ++ ++ V+ +A ++
Sbjct: 177 TANMIDFTPEEKELLKSVSLLTLKPVIYAANVHEESINHVENHSYIQSVVEIARMEKAEI 236
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + AQ+EAE+ EL EE+ +L LG+ ESGL LIRS +SLLGL T+FT+G E +AW
Sbjct: 237 IPVCAQIEAEIAELDEEEKGLFLEELGLKESGLDKLIRSAFSLLGLMTFFTAGTMEVRAW 296
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLAS 414
TIR APQAAG IH+DFE+GFIRAE V+YD F L AREKGLV L
Sbjct: 297 TIRKNTRAPQAAGTIHTDFERGFIRAEVVSYDAFTENNGLNGAREKGLV-------RLEG 349
Query: 415 YKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 350 KEYIMQDGDIVHFRFNV 366
>gi|410727290|ref|ZP_11365511.1| GTP-binding protein YchF [Clostridium sp. Maddingley MBC34-26]
gi|410599018|gb|EKQ53577.1| GTP-binding protein YchF [Clostridium sp. Maddingley MBC34-26]
Length = 365
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 183/347 (52%), Positives = 249/347 (71%), Gaps = 7/347 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEQMYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VD
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDS 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+ +E+RMEK LK ++ D +K E +E++++ L KP
Sbjct: 120 IRDIETINLELIFSDLEVLERRMEKSLKLVRSGDKTAKF----EYGVMERVKEQLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
R++ + + E D IK L L+T KP++Y N++E D+ + N +V +V A+ S
Sbjct: 176 VRTLEVTEEENDFIKGLFLITSKPVLYACNISEDDVMEGNFDNDYVKKVKEYAAAENSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA++E EL+ L EE+ E L+ G+ ESGL L+ ++Y LLGL ++ T+G +E +AW
Sbjct: 236 MVISAKIEEELSGLEDEEKAEMLSEYGLDESGLDKLVETSYRLLGLMSFLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TIR G APQAAG IHSD E+GFIRAE V YDD V GS AAA+EKG
Sbjct: 296 TIRRGTKAPQAAGKIHSDIERGFIRAEVVGYDDLVECGSEAAAKEKG 342
>gi|444351969|ref|YP_007388113.1| GTP-binding and nucleic acid-binding protein YchF [Enterobacter
aerogenes EA1509E]
gi|443902799|emb|CCG30573.1| GTP-binding and nucleic acid-binding protein YchF [Enterobacter
aerogenes EA1509E]
Length = 363
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 248/348 (71%), Gaps = 9/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE ++I VVRCFE+++I+HV GKV
Sbjct: 60 PQRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+DVIN EL SDLD E+ + ++ KK K D +K+ E AALEK L
Sbjct: 120 DPAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKI----ELAALEKCLPQLEKA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
R++ L+ E+D+I+ L LT+KP +Y+ANV E + NP++++V +A S
Sbjct: 176 GMLRALDLSKEEKDAIRYLSFLTLKPTMYIANVNEDGFEN---NPYLDQVRAIAEQEGSV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A VE+++ EL EER E++A LG+ E GL +IR+ Y+LL L+TYFT+G KE +A
Sbjct: 233 VVPVCAAVESDIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G TAPQAAG IH+DFEKGFIRA+T+AY+DF+A A+E G
Sbjct: 293 WTIPVGATAPQAAGKIHTDFEKGFIRAQTIAYEDFIAYKGEQGAKEAG 340
>gi|315917447|ref|ZP_07913687.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
gi|313691322|gb|EFS28157.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 365
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 193/374 (51%), Positives = 260/374 (69%), Gaps = 15/374 (4%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ LS + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNALSEIINPQRVV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA+QGEGLGNKFLS+IR +I QVVRCFED ++VHV+G VDP D
Sbjct: 65 AATVEFVDIAGLVKGAAQGEGLGNKFLSNIRSTAAICQVVRCFEDENVVHVDGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+DL+ ++K +EK K K +Q+K+KE E + L K + L + +
Sbjct: 125 IEVINTELIFADLETVDKAIEKHK----KLAQNKIKESVELMSVLPKAKSHLESFQLLKI 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ E+ +K LLT+KP+I+ ANVAE DLA+ N +V +V A L S V +S
Sbjct: 181 FDFTEEEKSLLKNYQLLTLKPMIFAANVAEDDLAE--GNAYVEKVREYAKTLGSEVVIVS 238
Query: 299 AQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 357
A+VEAEL E+ EE + E+L SLGV E+GL LIR+ + LLGL+TYFT+G KE +AWTI
Sbjct: 239 AKVEAELQEMDDEESKQEFLESLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIH 298
Query: 358 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKY 417
G TAP+AAG IH+DFEKGFIRA+ V+Y+DF+ A+E G++ L +Y
Sbjct: 299 IGDTAPKAAGEIHTDFEKGFIRAKVVSYEDFIQYRGWKGAQEVGVL-------RLEGKEY 351
Query: 418 FHWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 IVQDGDLMEFLFNV 365
>gi|365898283|ref|ZP_09436249.1| putative GTP-dependent nucleic acid-binding protein (engD)
[Bradyrhizobium sp. STM 3843]
gi|365420971|emb|CCE08791.1| putative GTP-dependent nucleic acid-binding protein (engD)
[Bradyrhizobium sp. STM 3843]
Length = 365
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 191/348 (54%), Positives = 239/348 (68%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I VVRCFED+DI HV GK+
Sbjct: 61 SGQIIPTRLTFVDIAGLVRGASKGEGLGNQFLANIREVDAIAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DLD +EKR++ L KK K D +K + + ALE L DG
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDNLAKKAKGNDKDAKEQYELVTRALE----LLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + E + L LLT KP++YV NV ES + N +V A +
Sbjct: 177 KPARLLERKAEEERAFGMLGLLTSKPVLYVCNVEESSAKN--GNSFSRQVFENAEKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EER E+L +LG+ E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVVISAKIESEIATLSREERTEFLDTLGLEEAGLDRLIRAGYQLLDLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AY D+VA A ARE G
Sbjct: 295 WTIHRGTKAPAAAGVIHTDFEKGFIRAETIAYADYVAFNGEAGAREAG 342
>gi|291524591|emb|CBK90178.1| GTP-binding protein YchF [Eubacterium rectale DSM 17629]
Length = 366
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 189/351 (53%), Positives = 255/351 (72%), Gaps = 8/351 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PN+GIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNIGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G VDP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K E +E ++ L DGK A
Sbjct: 120 ARDIETINLELIFSDVEILDRRIAKIAK-QARMDKTLAK---ELELVEAVKAHLEDGKMA 175
Query: 237 RSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 293
R+ + D E + K LLT KP IY ANV+E DLAD G SNPHV +V +A + +
Sbjct: 176 RTFEVPDDEDAQLWFKGYNLLTAKPTIYAANVSEDDLADDGASNPHVAKVREMAKEEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
I AQ+E EL +L +E+ EYL LGV SGL L+ ++YSLLGL ++ T+GE E +A
Sbjct: 236 VFVICAQIEQELADLDEDEKKEYLEDLGVESSGLDKLVAASYSLLGLISFLTAGEDECRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVS 404
WTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKG+V
Sbjct: 296 WTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLAAAREKGIVG 346
>gi|270291825|ref|ZP_06198040.1| GTP-binding protein YchF [Streptococcus sp. M143]
gi|270279353|gb|EFA25195.1| GTP-binding protein YchF [Streptococcus sp. M143]
Length = 371
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKKIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|337282967|ref|YP_004622438.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parasanguinis ATCC 15912]
gi|387878543|ref|YP_006308846.1| hypothetical protein Spaf_0004 [Streptococcus parasanguinis FW213]
gi|419800801|ref|ZP_14326057.1| GTP-binding protein YchF [Streptococcus parasanguinis F0449]
gi|335370560|gb|AEH56510.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parasanguinis ATCC 15912]
gi|385693701|gb|EIG24334.1| GTP-binding protein YchF [Streptococcus parasanguinis F0449]
gi|386792001|gb|AFJ25036.1| hypothetical protein Spaf_0004 [Streptococcus parasanguinis FW213]
Length = 378
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 187/361 (51%), Positives = 254/361 (70%), Gaps = 15/361 (4%)
Query: 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV 108
+ K M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL
Sbjct: 2 NGEKRKMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQK 60
Query: 109 LSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIV 168
L+ + +K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 61 LTEMITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVM 120
Query: 169 HVNGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEK 220
G+ VDP +D+D INLEL+ +DL+ + KR +++K K KDS AE
Sbjct: 121 REQGREDAFVDPLADIDTINLELILADLESVNKRYARVEKIARTQKDKDSV------AEF 174
Query: 221 AALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 280
L+KI+ L DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V
Sbjct: 175 NVLQKIKPVLEDGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIDYV 234
Query: 281 NEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGL 340
++ + A+ + V ISA+ E E++EL ++ E+L ++G++ESG+ L R+ Y LLGL
Sbjct: 235 KQIRDFAATENAEVVVISARAEEEISELDDADKQEFLEAIGLTESGVDKLTRAAYHLLGL 294
Query: 341 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREK 400
TYFT+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E
Sbjct: 295 GTYFTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEA 354
Query: 401 G 401
G
Sbjct: 355 G 355
>gi|417937047|ref|ZP_12580353.1| GTP-binding protein YchF [Streptococcus infantis X]
gi|343399489|gb|EGV12011.1| GTP-binding protein YchF [Streptococcus infantis X]
Length = 371
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 250/353 (70%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPDSIDYVKQIREFAE 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|225024260|ref|ZP_03713452.1| hypothetical protein EIKCOROL_01133 [Eikenella corrodens ATCC
23834]
gi|224943285|gb|EEG24494.1| hypothetical protein EIKCOROL_01133 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MS++ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSMKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +KI L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKILPHLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE +NPH++ + LA
Sbjct: 174 EGKPVRSFGLDADELAMLKPLFLLTAKPAMYVGNVAEDGF---DNNPHLDRLKALAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++Y+DFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYNDFVSLGGEAKAKEAG 340
>gi|146276400|ref|YP_001166559.1| GTP-dependent nucleic acid-binding protein EngD [Rhodobacter
sphaeroides ATCC 17025]
gi|145554641|gb|ABP69254.1| GTP-binding protein YchF [Rhodobacter sphaeroides ATCC 17025]
Length = 365
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 237/347 (68%), Gaps = 5/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL +L+ ++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDILAKIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IRE D+I V+RCFED DI HV G++
Sbjct: 61 SRQIIPTRMTFVDIAGLVRGASRGEGLGNQFLANIRECDAIAHVLRCFEDGDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +D + I EL+ +D+D IE+R+ L + + +D A +A GK
Sbjct: 121 DPVADAETIETELMLADMDSIERRLANLSRKLKGGDKEAADQDRLLRAALAALEA---GK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PAR+V ++ ++ + + L LLT KP++YV NV ES A N V +A +
Sbjct: 178 PARTVAVSADDQRAWRMLQLLTAKPVLYVCNVEESSAAS--GNSQSARVAEMAKAQGAAT 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V ISA++E E+ +LP+EE +L +G+ E+GL LIR+ Y LLGL+TYFT G KE +AW
Sbjct: 236 VVISARIEEEIAQLPAEEAAMFLEEMGLEEAGLDRLIRAGYQLLGLQTYFTVGPKEARAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI GM APQAAGVIH DFEKGFIRAETVAY+D+VA A A+E G
Sbjct: 296 TITKGMLAPQAAGVIHGDFEKGFIRAETVAYEDYVAGQGEAGAKEAG 342
>gi|89069313|ref|ZP_01156672.1| GTP-binding protein YchF [Oceanicola granulosus HTCC2516]
gi|89045080|gb|EAR51151.1| GTP-binding protein YchF [Oceanicola granulosus HTCC2516]
Length = 361
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 187/343 (54%), Positives = 245/343 (71%), Gaps = 7/343 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ +++S++ +
Sbjct: 2 GIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDRLAAIAQSKQII 61
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+VDP +D
Sbjct: 62 PTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRVDPVAD 121
Query: 180 VDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
I EL+ +DL+ IE+R++ + +K + D ++ +E KAA Q L DG+PAR
Sbjct: 122 AQTIETELMLADLESIERRLQNIVRKVRGGDKEAVQQERLLKAA----QAVLEDGRPARV 177
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
V ++D ++ + K L LL+ KP++YV NV E + A G N EV +A+ + V IS
Sbjct: 178 VEVDDEDQKAWKMLQLLSTKPVLYVCNV-EEEAAGTG-NALSAEVAEMAAAQGNSSVVIS 235
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A++E E+++L +EE +L+ +G+ E GL LIR+ Y LL L+TYFT G KE +AWTIR
Sbjct: 236 AKIEEEISQLEAEEAEMFLSEMGLEEPGLDRLIRAGYELLHLQTYFTVGPKEARAWTIRE 295
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
G APQAAGVIH DFEKGFIRAET+AYDDFVA G A+E G
Sbjct: 296 GTAAPQAAGVIHGDFEKGFIRAETIAYDDFVALGGEQPAKEAG 338
>gi|340754565|ref|ZP_08691311.1| GTP-binding protein YchF [Fusobacterium sp. D12]
gi|313685580|gb|EFS22415.1| GTP-binding protein YchF [Fusobacterium sp. D12]
Length = 364
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 190/373 (50%), Positives = 259/373 (69%), Gaps = 14/373 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ + + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLQALAKIIQPQRIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA+QGEGLGNKFLS+IR +I QVVRCFED ++VHV+G VDP D
Sbjct: 65 AATVEFVDIAGLVKGAAQGEGLGNKFLSNIRSTAAICQVVRCFEDENVVHVDGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAE-KAALEKIQQALMDGKPARS 238
++VIN EL+F+DL+ ++K +EK K K +Q+K+KE E + L K + L + + ++
Sbjct: 125 IEVINTELIFADLETVDKAIEKHK----KLAQNKIKESVELMSVLPKAKAHLENFQLLKT 180
Query: 239 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298
+ + E+ +K LLT+KP+I+ ANVAE DLA+ N +V +V A + S V +S
Sbjct: 181 FSFTEAEKVLLKNYQLLTLKPMIFAANVAEDDLAE--GNSYVEKVKEYAEKMGSEVVIVS 238
Query: 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 358
A+VEAEL E+ E R E+L SL E+GL LIR+ + LLGL+TYFT+G KE +AWTI
Sbjct: 239 AKVEAELQEMDEESRQEFLESLRAKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIHI 298
Query: 359 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLASYKYF 418
G TAP+AAG IH+DFEKGFIRA+ V+Y DF+ A+E G++ L +Y
Sbjct: 299 GDTAPKAAGEIHTDFEKGFIRAKVVSYQDFIQYKGWKGAQEVGVL-------RLEGKEYT 351
Query: 419 HWNSYMLRYFFSL 431
+ ++ + F++
Sbjct: 352 VQDGDLMEFLFNV 364
>gi|440781898|ref|ZP_20960126.1| GTP-binding protein YchF [Clostridium pasteurianum DSM 525]
gi|440220616|gb|ELP59823.1| GTP-binding protein YchF [Clostridium pasteurianum DSM 525]
Length = 365
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 192/348 (55%), Positives = 251/348 (72%), Gaps = 7/348 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL + S+
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVDVPDKRLDVLEKMYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V AS+EF DIAGLVKGAS+GEGLGNKFLSHIRE +I+ VVRCFED +IVHV G VDP
Sbjct: 60 RKVHASIEFYDIAGLVKGASKGEGLGNKFLSHIRESAAIVHVVRCFEDENIVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ I+LELVFSDL+ +E+RMEK +K ++ D +K AE +EKI+ L GKP
Sbjct: 120 IRDIETISLELVFSDLEVLERRMEKSIKLARSGDKTAK----AEMEIMEKIKSHLESGKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESD-LADPGSNPHVNEVMNLASDLQSGR 294
R++ L + E+ +K+L LLT KP++Y AN++E D L+ N V +V LA+ +S
Sbjct: 176 VRTLDLTEDEQLFVKELFLLTSKPVLYAANISEDDLLSGNAENEFVKKVRELANSEKSEI 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
VT+ A +E +L+ L EE E L+ G+ ESGL LI S+Y LLGL ++ T+G E +AW
Sbjct: 236 VTVCASLEEQLSTLTEEEEKEMLSEYGLEESGLDKLIASSYKLLGLMSFLTAGTDEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402
TI G AP+AAG IH+D E+GFIRAE V+Y+D + GS AAA+EKGL
Sbjct: 296 TITNGTKAPKAAGKIHTDIERGFIRAEIVSYEDLINCGSEAAAKEKGL 343
>gi|83313445|ref|YP_423709.1| GTP-dependent nucleic acid-binding protein EngD [Magnetospirillum
magneticum AMB-1]
gi|82948286|dbj|BAE53150.1| Predicted GTPase, probable translation factor [Magnetospirillum
magneticum AMB-1]
Length = 367
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 191/380 (50%), Positives = 253/380 (66%), Gaps = 16/380 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPRL L + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTSTAAAQAANYPFCTIEPNVGRVAVPDPRLDRLVVIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G V
Sbjct: 61 SQKEIPTQLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D + I EL+ +DLD +E+R+ L KK K D ++K + D + + L +G
Sbjct: 121 DPVRDAETIETELMLADLDSLERRIVPLEKKAKNGDKEAKAQVD----VMAPLLACLREG 176
Query: 234 KPARSVTLN-DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR++T + + ER K L L+T+KP++Y NV E+ A N V A+ +
Sbjct: 177 KPARTITFDTEEERRIAKTLGLMTVKPVVYACNVDEASAAT--GNKFSEAVAKFAAAEGN 234
Query: 293 GRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
V ISA +E+E+ +L S EER E+L +LG+ E+GL +IR+ Y LL L T+FT G KE
Sbjct: 235 SSVVISAAIESEVAQLASEEERKEFLETLGLEETGLARVIRAGYELLHLITFFTVGPKEA 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G APQAAGVIH+DFE+GFIRAET+AYDDF+A A A+E G +
Sbjct: 295 RAWTLQKGCKAPQAAGVIHTDFERGFIRAETIAYDDFIACNGEAGAKEAGKM-------R 347
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + + + F++
Sbjct: 348 LEGKEYVVQDGDIFHFLFNV 367
>gi|13472408|ref|NP_103975.1| GTP-dependent nucleic acid-binding protein EngD [Mesorhizobium loti
MAFF303099]
gi|14023154|dbj|BAB49761.1| probable GTP-binding protein [Mesorhizobium loti MAFF303099]
Length = 367
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 246/351 (70%), Gaps = 11/351 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPRL ++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D + + EL+ +DLD +E+R+ ++ K+ +KD ++ +AALE +Q G
Sbjct: 121 DPVADAETVETELMLADLDSLERRIVQIRKRAGSKDKEATTVLPMMEAALELLQA----G 176
Query: 234 KPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290
KP R V L + ++ L LLT P++YV NV E+D A N H V +A+
Sbjct: 177 KPTR-VLLKGISAEDLRILQGLNLLTSHPVLYVCNVGEADAAT--GNEHTRAVEKMAAAQ 233
Query: 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 350
+G V ISA +EAE+ +L EE +E+L+SLG+ E GL +IR+ Y LL L TYFT G KE
Sbjct: 234 GAGTVVISAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPKE 293
Query: 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T+AWTI G APQAAGVIH+DFE+GFIRA+T+AY+DFV G AA+E G
Sbjct: 294 TRAWTIHKGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVTLGGEVAAKEAG 344
>gi|73542721|ref|YP_297241.1| GTP-dependent nucleic acid-binding protein EngD [Ralstonia eutropha
JMP134]
gi|72120134|gb|AAZ62397.1| Conserved hypothetical protein 92 [Ralstonia eutropha JMP134]
Length = 387
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 247/349 (70%), Gaps = 9/349 (2%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 24 TMSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAKLAEIV 82
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
K ++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV G+
Sbjct: 83 KPERILPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAITHVVRCFEDENVIHVAGR 142
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP SD++VIN EL +DL +EK + + +K +A D +++ A LEK Q L
Sbjct: 143 VDPLSDIEVINTELALADLGTVEKALARYIKPARAGDKEAQRL----VAVLEKAQAVLDQ 198
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
K R++ L E D+I+ CL+T KP +YVANV E + NPH++ V A S
Sbjct: 199 AKAVRTLDLAPEEWDAIRPFCLITAKPTMYVANVREDGFEN---NPHLDAVREYAKQTNS 255
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +EAE+ +L ++ E+LA LG+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 256 PVVAVCAAIEAEIADLDDADKAEFLADLGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVR 315
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAP+AAGVIH+DFE+GFIRA+T++YDD++A A+E G
Sbjct: 316 AWTIHVGDTAPKAAGVIHTDFERGFIRAQTISYDDYIAFKGETGAKEAG 364
>gi|417911632|ref|ZP_12555333.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU105]
gi|341652603|gb|EGS76389.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU105]
Length = 365
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 258/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM----ELRILTQIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA+ E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKSEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|332523762|ref|ZP_08400014.1| GTP-binding protein YchF [Streptococcus porcinus str. Jelinkova
176]
gi|332315026|gb|EGJ28011.1| GTP-binding protein YchF [Streptococcus porcinus str. Jelinkova
176]
Length = 371
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 186/355 (52%), Positives = 250/355 (70%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLNKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D+D INLEL+ +DLD I KR +++K K KDS AE L+KI
Sbjct: 120 DAFVDPMADIDTINLELILADLDSINKRYARVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DGK AR++ D E +K L LLT KP++YVANV E +ADP +V ++
Sbjct: 174 KPVLEDGKSARTIDFTDEEEKVVKGLFLLTTKPVLYVANVDEDRVADPDDIDYVKQIRAF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A + V ISA+ E E++EL +++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AETENAEVVVISARAEEEISELDDDDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 294 GEKEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|226226614|ref|YP_002760720.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
gi|226089805|dbj|BAH38250.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
Length = 366
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 249/350 (71%), Gaps = 9/350 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LR GIVGLPNVGKSTLFNA+ + KA+AAN+PFCT+EPNVG+V VPD RL L+ + + +
Sbjct: 2 LRLGIVGLPNVGKSTLFNALT-SAKAEAANYPFCTVEPNVGMVEVPDARLTRLAEIVQPK 60
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA V+FVDIAGLVKGASQGEGLGNKFL +IRE D+I+ V+RCF D+D+ HV G+ DP
Sbjct: 61 RTVPAVVQFVDIAGLVKGASQGEGLGNKFLQNIRETDAIVHVIRCFADDDVTHVMGQPDP 120
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D ++I LEL SDL +EKR++K+K+ KA D ++ AE ALE AL +GKP
Sbjct: 121 ARDKEIIELELALSDLATVEKRLDKVKRAAKAADKEAL----AELPALEAANAALSEGKP 176
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN--LASDLQSG 293
L+ + + LL+ KP++Y ANV +++L+ P++ + AS +
Sbjct: 177 LWRAGLDADALAKLSGMQLLSAKPVLYAANVTDAELSGE-EGPYLKALRAAVAASGEHAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V SA++EAEL EL +EERVE+LASLG+ +GL LIR+ Y+LLGL TYFT+GE+E +A
Sbjct: 236 VVPFSAKIEAELAELSTEERVEFLASLGIETAGLDRLIRAGYTLLGLETYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
WTI G TAP AAGVIH+DFEKGFIRAETVA++DF G AREKG V
Sbjct: 296 WTIHRGDTAPVAAGVIHTDFEKGFIRAETVAFNDFSTLGGWKPAREKGAV 345
>gi|261363931|ref|ZP_05976814.1| GTP-binding protein YchF [Neisseria mucosa ATCC 25996]
gi|288567945|gb|EFC89505.1| GTP-binding protein YchF [Neisseria mucosa ATCC 25996]
Length = 363
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 246/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|116490233|ref|YP_809777.1| GTPase, translation factor [Oenococcus oeni PSU-1]
gi|118586489|ref|ZP_01543933.1| GTP-binding protein [Oenococcus oeni ATCC BAA-1163]
gi|290889615|ref|ZP_06552705.1| hypothetical protein AWRIB429_0095 [Oenococcus oeni AWRIB429]
gi|419759238|ref|ZP_14285544.1| GTPase, translation factor [Oenococcus oeni AWRIB304]
gi|419857204|ref|ZP_14379914.1| GTPase, translation factor [Oenococcus oeni AWRIB202]
gi|419858164|ref|ZP_14380842.1| GTPase, translation factor [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421183865|ref|ZP_15641294.1| GTPase, translation factor [Oenococcus oeni AWRIB318]
gi|421187064|ref|ZP_15644443.1| GTPase, translation factor [Oenococcus oeni AWRIB418]
gi|421193330|ref|ZP_15650579.1| GTPase, translation factor [Oenococcus oeni AWRIB553]
gi|421195862|ref|ZP_15653065.1| GTPase, translation factor [Oenococcus oeni AWRIB568]
gi|421196338|ref|ZP_15653527.1| GTPase, translation factor [Oenococcus oeni AWRIB576]
gi|116090958|gb|ABJ56112.1| Predicted GTPase, probable translation factor [Oenococcus oeni
PSU-1]
gi|118433053|gb|EAV39775.1| GTP-binding protein [Oenococcus oeni ATCC BAA-1163]
gi|290480813|gb|EFD89447.1| hypothetical protein AWRIB429_0095 [Oenococcus oeni AWRIB429]
gi|399904160|gb|EJN91622.1| GTPase, translation factor [Oenococcus oeni AWRIB304]
gi|399964355|gb|EJN98997.1| GTPase, translation factor [Oenococcus oeni AWRIB418]
gi|399968502|gb|EJO02935.1| GTPase, translation factor [Oenococcus oeni AWRIB318]
gi|399972534|gb|EJO06734.1| GTPase, translation factor [Oenococcus oeni AWRIB553]
gi|399974988|gb|EJO09057.1| GTPase, translation factor [Oenococcus oeni AWRIB568]
gi|399977538|gb|EJO11518.1| GTPase, translation factor [Oenococcus oeni AWRIB576]
gi|410498269|gb|EKP89725.1| GTPase, translation factor [Oenococcus oeni AWRIB202]
gi|410499088|gb|EKP90525.1| GTPase, translation factor [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 367
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 179/347 (51%), Positives = 250/347 (72%), Gaps = 3/347 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGVVEVPDSRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+ D+I++VVR FED++I HV GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQTDAIIEVVRAFEDSEITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP +D++ IN EL+ +D++QI+KR K++K A +S+ K AE L+KI+ L GK
Sbjct: 120 DPIADIETINTELIIADMEQIDKRYSKIEKA-AVNSKDKAA-IAEYNVLKKIKPVLEAGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
P RS+ ++ E+ + L LT KP++YVAN++E D+ADP S+ + + A+ +
Sbjct: 178 PVRSLQFDEEEKKIVHNLFFLTDKPMLYVANISEGDMADPASSQFYQAISDYAAKDGAEV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ++A+ E E++E+ ++ ++L GVSE GL LIR+ Y LLGLRT+FT+G KET+AW
Sbjct: 238 IGLAAKTEEEISEMDQADKADFLEMAGVSEPGLNKLIRAAYHLLGLRTFFTAGGKETRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T ++GM APQ AG+IHSDFE+GFIRAET+++ D GS+AA + G
Sbjct: 298 TFKSGMKAPQVAGIIHSDFERGFIRAETISFPDLDKLGSVAAVKAAG 344
>gi|23015982|ref|ZP_00055744.1| COG0012: Predicted GTPase, probable translation factor
[Magnetospirillum magnetotacticum MS-1]
Length = 367
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 243/350 (69%), Gaps = 9/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPRL L + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTSTAAAQAANYPFCTIEPNVGRVAVPDPRLDRLVVIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G V
Sbjct: 61 SQKEIPTQLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D + I EL+ +DLD +E+R+ L KK K D ++K + D + + L +G
Sbjct: 121 DPVRDAETIETELMLADLDSLERRIVPLEKKAKNGDKEAKAQVD----VMAPLLAVLREG 176
Query: 234 KPARSVTLN-DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR+VT + + ER K L L+T+KP++Y NV E+ A N V A+ +
Sbjct: 177 KPARTVTFDSEEERRIAKTLGLMTVKPVVYACNVDEASAAT--GNKFSEAVAKFAAAEGN 234
Query: 293 GRVTISAQVEAELTELPSE-ERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
V ISA +E+E+ +L SE ER E+L +LG+ E+GL +IR+ Y LL L T+FT G KE
Sbjct: 235 SSVVISAAIESEVAQLASEDERKEFLETLGLEETGLARVIRAGYELLHLITFFTVGPKEA 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++ G APQAAGVIH+DFE+GFIRAET+AYDDF+A A A+E G
Sbjct: 295 RAWTLQKGCKAPQAAGVIHTDFERGFIRAETIAYDDFIACNGEAGAKEAG 344
>gi|357052491|ref|ZP_09113598.1| GTP-binding protein YchF [Clostridium clostridioforme 2_1_49FAA]
gi|355386678|gb|EHG33715.1| GTP-binding protein YchF [Clostridium clostridioforme 2_1_49FAA]
Length = 365
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 187/349 (53%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDVRLDKLTAMYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +++HV+G ++P
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDPNVIHVDGCINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSD++ +E+R+ K KG + L ++ E L+ I+ L DGK A
Sbjct: 120 LRDIETINLELIFSDIEILERRIAKQSKGAF--NNKDLAKEVE--LLKAIKAHLEDGKLA 175
Query: 237 RSVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 294
RS +D + R+ I L LLT KP+I+ ANVAE DLAD G+ N +V V A +
Sbjct: 176 RSFEPDDDDAREFINTLNLLTWKPVIFAANVAEDDLADDGADNQYVRSVRGFADENNCEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
I A++E E+ EL +E+ +L LG++ESGL LI ++Y +LGL +Y T+G +E++AW
Sbjct: 236 FVICAEIEQEIAELDDDEKKMFLDDLGLTESGLEKLIAASYRILGLMSYLTAGPQESRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IHSDFE+GFIRAE V YDD +A GS+ AA+EKGLV
Sbjct: 296 TIKVGTKAPQAAGKIHSDFERGFIRAEVVNYDDLMACGSMNAAKEKGLV 344
>gi|332639014|ref|ZP_08417877.1| GTP-binding protein YchF [Weissella cibaria KACC 11862]
Length = 367
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 184/347 (53%), Positives = 246/347 (70%), Gaps = 3/347 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQELVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+V++I+ VVR F+D+DI HV+GKV
Sbjct: 60 ADKIVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D++ INLEL+ +DL+ ++KR ++K + + E L K++ L +GK
Sbjct: 120 DPIDDINTINLELILADLESVDKRYATVEKKAKQAKDKDAAAEFE--VLAKLKPVLEEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
PARS+ N+ E+ ++ L LLT KP++YVANVAE D+ADP S+ + ++ A+ +
Sbjct: 178 PARSIDWNEDEQKIVRGLFLLTSKPVLYVANVAEDDMADPESSKYFQQIKEFAAAENADV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ ISA+ E EL + E++ E + G++E GL LIRS Y LL LRT+FT+G KET+AW
Sbjct: 238 IGISARAEEELAGMDDEDKAELMELQGITEPGLNRLIRSAYHLLDLRTFFTAGGKETRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T RAGM APQ AGVIHSDFE+GFIRAETVA+ D GS+ A +E G
Sbjct: 298 TFRAGMKAPQVAGVIHSDFERGFIRAETVAFADLDEYGSMKAVKEAG 344
>gi|322388483|ref|ZP_08062086.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
infantis ATCC 700779]
gi|419843769|ref|ZP_14367075.1| GTP-binding protein YchF [Streptococcus infantis ATCC 700779]
gi|321140796|gb|EFX36298.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
infantis ATCC 700779]
gi|385702468|gb|EIG39612.1| GTP-binding protein YchF [Streptococcus infantis ATCC 700779]
Length = 371
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 251/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPESIDYVKKIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|372324292|ref|ZP_09518881.1| GTP-binding and nucleic acid-binding protein [Oenococcus kitaharae
DSM 17330]
gi|366983100|gb|EHN58499.1| GTP-binding and nucleic acid-binding protein [Oenococcus kitaharae
DSM 17330]
Length = 367
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 244/348 (70%), Gaps = 5/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G AQ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AQMANYPFATIEPNVGVVEVPDVRLVRIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+ D+I+QVVR FED++I HV+GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQTDAIIQVVRAFEDSEITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALMDG 233
DP D++ +N EL+ +DLD + R K++K SK KE AE L+KI+ L G
Sbjct: 120 DPLEDIETLNTELIIADLDHVNNRYSKVEKAAV---NSKDKEAIAEYQLLKKIKPVLEAG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RS+ + E + L LT KP++YVAN+AE D+ADP +P V + A+ +
Sbjct: 177 EPVRSLEFDTDEAKIVHGLFFLTDKPMLYVANIAEDDMADPSQSPLYQVVADYAAKDHAE 236
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ++A+ E E++E+ ++ ++L GV E+GL LIR+ Y LLGLRT+FT+G KET+A
Sbjct: 237 VIGLAAKTEEEISEMAESDKADFLEMAGVQEAGLNRLIRTAYHLLGLRTFFTAGGKETRA 296
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT +AGM APQ AG+IHSDFE+GFIRAETV+Y D GS+AA + G
Sbjct: 297 WTFKAGMKAPQVAGIIHSDFERGFIRAETVSYTDLDQLGSMAAVKAAG 344
>gi|293364519|ref|ZP_06611244.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
oralis ATCC 35037]
gi|307702809|ref|ZP_07639759.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
oralis ATCC 35037]
gi|406577874|ref|ZP_11053455.1| GTP-binding protein YchF [Streptococcus sp. GMD6S]
gi|419778216|ref|ZP_14304111.1| GTP-binding protein YchF [Streptococcus oralis SK10]
gi|291317027|gb|EFE57455.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
oralis ATCC 35037]
gi|307623665|gb|EFO02652.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
oralis ATCC 35037]
gi|383187434|gb|EIC79885.1| GTP-binding protein YchF [Streptococcus oralis SK10]
gi|404459103|gb|EKA05475.1| GTP-binding protein YchF [Streptococcus sp. GMD6S]
Length = 371
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 251/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPDSIEYVKKIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|323142933|ref|ZP_08077643.1| GTP-binding protein YchF [Succinatimonas hippei YIT 12066]
gi|322417286|gb|EFY07910.1| GTP-binding protein YchF [Succinatimonas hippei YIT 12066]
Length = 365
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 249/347 (71%), Gaps = 6/347 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A A NFPFCTIEPN GIV VPD RL ++ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIA-AENFPFCTIEPNTGIVPVPDERLDKIAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP ++EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I VVRCF+D +++HVNGKV
Sbjct: 60 PQKIVPTAMEFVDIAGLVKGASKGEGLGNQFLMNIRETDAIAHVVRCFDDPNVIHVNGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SDV++IN EL +DLD +K +++L+K +A+ K + A+ ALEK + AL +GK
Sbjct: 120 DPISDVEIINTELALADLDVCDKALQRLEK-RARTGGDK-EALAQVVALEKCKPALEEGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R ++ + +++ LT+KP++Y+ANV+E D NP++ ++ + A+ S
Sbjct: 178 MLRQISFTKEDLHALRGFNFLTLKPVMYIANVSEDGFTD---NPYLTKLEDYAAKENSIV 234
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
V +SA +EA+L + E+R E++ SLG+SE GL +IR+ Y LLGL+T+FT+G KE +AW
Sbjct: 235 VPVSAAIEADLASMEPEDRKEFMDSLGISEPGLNRVIRAGYKLLGLQTFFTAGPKEVRAW 294
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T++ G TAPQAAG IHSDFE+GFIRA+T+AYDDF+ G A+E G
Sbjct: 295 TVKVGATAPQAAGKIHSDFERGFIRAQTIAYDDFIKYGGENGAKEAG 341
>gi|375111018|ref|ZP_09757230.1| GTP-binding protein YchF [Alishewanella jeotgali KCTC 22429]
gi|393762745|ref|ZP_10351371.1| GTP-binding protein YchF [Alishewanella agri BL06]
gi|397169687|ref|ZP_10493118.1| GTP-binding protein YchF [Alishewanella aestuarii B11]
gi|374568848|gb|EHR40019.1| GTP-binding protein YchF [Alishewanella jeotgali KCTC 22429]
gi|392606367|gb|EIW89252.1| GTP-binding protein YchF [Alishewanella agri BL06]
gi|396088675|gb|EJI86254.1| GTP-binding protein YchF [Alishewanella aestuarii B11]
Length = 363
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 245/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPD RL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDLRLDKLAQIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGNKFL++IRE D+I VVRCF+D +I+HV GK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVKGASKGEGLGNKFLANIRETDAIGHVVRCFDDENIIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP D+D IN+ELV SD+D E+ R++K KG KD++++L A LEK++ L
Sbjct: 120 DPADDIDTINMELVLSDMDSAERAILRVQKKAKGGDKDAKAEL------AVLEKVKAHLE 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G R + L+ E+ I + LT+KP +Y+ANV E +NPH++ V +A+
Sbjct: 174 NGLTLRQLELDKEEKALIAYMNFLTIKPTMYIANVLEDGF---DNNPHLDVVRGIAAKEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL EE+ E++A +G+ E GL +IR YSLL L TYFT+G KE
Sbjct: 231 AIVVPVCAAIESEIAELDDEEKAEFMADMGLEEPGLNRVIRGGYSLLNLHTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+ G TAPQAAGVIH+DFEKGFIRAE V+YDDFV A A+E G
Sbjct: 291 RAWTVAVGATAPQAAGVIHTDFEKGFIRAEVVSYDDFVQYNGEAGAKEAG 340
>gi|349610327|ref|ZP_08889682.1| GTP-dependent nucleic acid-binding protein engD [Neisseria sp.
GT4A_CT1]
gi|348610210|gb|EGY59908.1| GTP-dependent nucleic acid-binding protein engD [Neisseria sp.
GT4A_CT1]
Length = 363
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 191/350 (54%), Positives = 249/350 (71%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NVAE + NP+++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPYLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|313885419|ref|ZP_07819169.1| GTP-binding protein YchF [Eremococcus coleocola ACS-139-V-Col8]
gi|312619149|gb|EFR30588.1| GTP-binding protein YchF [Eremococcus coleocola ACS-139-V-Col8]
Length = 366
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 184/374 (49%), Positives = 256/374 (68%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL ++ +
Sbjct: 1 MPLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDKRLDDITKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V + EF DIAG+VKGAS+GEGLGNKFLS+IR+VD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTVATTFEFTDIAGIVKGASKGEGLGNKFLSNIRQVDAICHVVRCFEDGNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD++ INLEL+ +DL+ I+KR+ ++ K+ K KD+++ AE L K++ L
Sbjct: 120 DPISDIETINLELILADLESIDKRIGRVEKQAKTKDAEAM----AELEVLTKLKAGLEAN 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+ A ++ + ++ L LLT K ++YVAN+ E ++ADP +NP + +V LA+ +
Sbjct: 176 QMANALEFTKEQEPIVRNLFLLTRKKMLYVANIGEEEVADPSANPFLAQVQELAASQGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E E+ L +E+ +L G+ ESGL LI++TY LLGL TYFT+GE+E +A
Sbjct: 236 VVPVCASLEEEIAVLDDQEKAAFLEDFGMPESGLDRLIQATYHLLGLGTYFTAGEQEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GM APQAAG+IH+DFE+GFIRAET+ YDD +A GS+ AA+E G HY
Sbjct: 296 WTFKQGMKAPQAAGIIHTDFERGFIRAETLHYDDLMAYGSVQAAKEAG-----HYRSEGK 350
Query: 414 SYKYFHWNSYMLRY 427
Y + + R+
Sbjct: 351 EYVVKDGDIMLFRF 364
>gi|452963749|gb|EME68808.1| GTP-dependent nucleic acid-binding protein EngD [Magnetospirillum
sp. SO-1]
Length = 367
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 253/380 (66%), Gaps = 16/380 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPRL L + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTSTAAAQAANYPFCTIEPNVGRVAVPDPRLDRLVVIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G V
Sbjct: 61 SQKEIPTQLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D + I EL+ +DLD +E+R+ L KK K D ++K + D + + L +G
Sbjct: 121 DPVRDAETIETELMLADLDSLERRIVPLEKKAKNGDKEAKAQVD----VMAPLLACLREG 176
Query: 234 KPARSVTLN-DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KPAR+V+ + + ER K L L+T+KP++Y NV E+ A N V A+ +
Sbjct: 177 KPARTVSFDSEEERRIAKTLGLMTVKPVVYACNVDEASAAT--GNKFSEAVAKFAAAEGN 234
Query: 293 GRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
V ISA +E+E+ +L S EER E+L +LG+ E+GL +IR+ Y LL L T+FT G KE
Sbjct: 235 SSVVISAAIESEVAQLASEEERKEFLETLGLEETGLARVIRAGYELLHLITFFTVGPKEA 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT++ G APQAAGVIH+DFE+GFIRAET+AYDDFVA A A+E G +
Sbjct: 295 RAWTLQKGCKAPQAAGVIHTDFERGFIRAETIAYDDFVACNGEAGAKEAGKM-------R 347
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + + + F++
Sbjct: 348 LEGKEYVVQDGDIFHFLFNV 367
>gi|410471587|ref|YP_006894868.1| hypothetical protein BN117_0851 [Bordetella parapertussis Bpp5]
gi|408441697|emb|CCJ48184.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 363
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 240/350 (68%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV G+V
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++VI EL +DL EK R K + KD+Q + LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLV------TVLEKCIAQLN 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A
Sbjct: 174 QAKPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE
Sbjct: 231 APMVAICAAIESEIVDLPEEDRQTFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G
Sbjct: 291 RAWTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG 340
>gi|385261850|ref|ZP_10039967.1| GTP-binding protein YchF [Streptococcus sp. SK643]
gi|385192572|gb|EIF39977.1| GTP-binding protein YchF [Streptococcus sp. SK643]
Length = 371
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 252/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKSLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAA 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAG 348
>gi|346991778|ref|ZP_08859850.1| GTP-binding protein YchF [Ruegeria sp. TW15]
Length = 365
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 243/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGDVAVPDDRLDKLAAIAS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D D I EL+ +DL+ IEKR L +K K D +++ ++ L + Q L +G
Sbjct: 121 DPVADADTIETELMMADLESIEKRRANLVRKLKGNDKEAQQQD----RLLTEAQVMLENG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++D + + K L LLT KP++YV NV+E + A+ N + +V +A+ +
Sbjct: 177 KPARLVEVSDEDAKAWKMLQLLTTKPVLYVCNVSEEEAAE--GNEYSAKVAEMAAAQGNA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E E++ L EE +L +G+ E GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAKIEEEISLLEDEEAQMFLEEMGLEEPGLDRLIRAGYDLLKLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AYDD++AA A+E G
Sbjct: 295 WTIRTGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIAANGEQGAKEAG 342
>gi|342216565|ref|ZP_08709212.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341587455|gb|EGS30855.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 362
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 253/347 (72%), Gaps = 6/347 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPNVG+V VPD RL +LS +S+S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIEPNVGVVNVPDERLKILSKISQSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP S++F DIAGLV+GAS GEGLGN+FL+HIREV++I+ VVRCF+++ I+HV+G +DP
Sbjct: 60 REVPVSIKFFDIAGLVRGASHGEGLGNQFLNHIREVEAIVHVVRCFDNDQIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+ SDLDQ+EKR KL K D K + D +E++ AL +P
Sbjct: 120 IRDIETINLELMLSDLDQLEKRQGKLVKQVKGDKALKPELD----LVERLIGALEKSEPL 175
Query: 237 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296
R++ L++ E I LLT KP+IYVANV+E +L+ S+P++++V A L V
Sbjct: 176 RTMELSEEEEKMISSFNLLTFKPVIYVANVSEDELSQ-DSHPYIDQVKEYAEKLHDEVVP 234
Query: 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 356
ISA++EAE+ L +E+ +L LG+ +SGL LI+++Y LLGL ++ T+G E++AWTI
Sbjct: 235 ISAEIEAEIATLDDDEKQLFLEELGIEQSGLDRLIKASYKLLGLISFLTTGPMESRAWTI 294
Query: 357 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
G APQA G IHSD E+GFI+A+ +++DD V AGS+A ARE+GL+
Sbjct: 295 TDGTKAPQAGGKIHSDIERGFIKADVISFDDLVKAGSMAKAREEGLI 341
>gi|422857307|ref|ZP_16903957.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1057]
gi|422861109|ref|ZP_16907751.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK330]
gi|327463838|gb|EGF10154.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1057]
gi|327467734|gb|EGF13228.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK330]
Length = 371
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 253/355 (71%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SEFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++
Sbjct: 174 KPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVIISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAG 348
>gi|241664357|ref|YP_002982717.1| GTP-dependent nucleic acid-binding protein EngD [Ralstonia
pickettii 12D]
gi|240866384|gb|ACS64045.1| GTP-binding protein YchF [Ralstonia pickettii 12D]
Length = 363
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 246/349 (70%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPD RL L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDARLQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GKV
Sbjct: 60 PERVLPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP +D++VIN EL +DL +EK +++ K AK K +A K A LEK Q+ L +
Sbjct: 120 DPIADIEVINTELALADLATVEKALQRYTKA-AKSGNDK---EAAKLVAVLEKAQKVLDE 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
KP R + L D E ++K LCL+T KP +YVANV E + NPH++ V N A+ S
Sbjct: 176 AKPVRGLNLTDDEWATLKPLCLITAKPTMYVANVREDGFEN---NPHLDAVRNYAAQTNS 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A +EAE+ +L ++ E+LA +G+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 233 PVVAVCAAIEAEIADLDDADKAEFLADIGMEEPGLNRVIRAAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAP+AA IH+DFE+GFIRA+T++Y+D++ A+E G
Sbjct: 293 AWTIHIGDTAPRAAAAIHTDFERGFIRAQTISYEDYIQYKGEQGAKEAG 341
>gi|389606536|emb|CCA45449.1| GTP-dependent nucleic acid-binding protein engD [Neisseria
meningitidis alpha522]
Length = 363
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 247/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q + +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVD------LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+
Sbjct: 174 EGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAG 340
>gi|253999720|ref|YP_003051783.1| GTP-dependent nucleic acid-binding protein EngD [Methylovorus
glucosetrophus SIP3-4]
gi|313201768|ref|YP_004040426.1| GTP-binding protein ychf [Methylovorus sp. MP688]
gi|253986399|gb|ACT51256.1| GTP-binding protein YchF [Methylovorus glucosetrophus SIP3-4]
gi|312441084|gb|ADQ85190.1| GTP-binding protein YchF [Methylovorus sp. MP688]
Length = 361
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/346 (53%), Positives = 248/346 (71%), Gaps = 9/346 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVGIV VPDPRL L + Q
Sbjct: 1 MKCGIVGLPNVGKSTLFNAITRAGIA-AENYPFCTIEPNVGIVEVPDPRLKPLIDIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D ++VHV GKVDP
Sbjct: 60 KVQPAIVEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDGNVVHVAGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ IN EL SD++ +EK +++ KK K+ D ++ A A LEKIQ+ L + KP
Sbjct: 120 LDDIETINTELALSDMETVEKTLQREGKKAKSGDKEAI----ALCAVLEKIQKWLDESKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295
R++ L+ + IK LCL+T+KP++Y+ANV ES + NP +++V+NL + V
Sbjct: 176 VRTLGLDADQLQLIKPLCLITVKPVMYLANVDESGFEN---NPLLDKVVNLGKAENAPVV 232
Query: 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 355
I A++E+E+ +L E++ +L LG+ E GL +IR+ YSLLGL+TYFT+G KE +AWT
Sbjct: 233 AICAKIESEIADLEDEDKAMFLTELGLEEPGLDRVIRAAYSLLGLQTYFTAGVKEVRAWT 292
Query: 356 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
++ G TAPQAAGVIH+DFE+GFIRAE +AY++FV A+E G
Sbjct: 293 VKRGSTAPQAAGVIHTDFERGFIRAEVIAYEEFVKNKGEQGAKEAG 338
>gi|15599868|ref|NP_253362.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa PAO1]
gi|107099660|ref|ZP_01363578.1| hypothetical protein PaerPA_01000678 [Pseudomonas aeruginosa PACS2]
gi|116052818|ref|YP_793135.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218893770|ref|YP_002442639.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa LESB58]
gi|254238587|ref|ZP_04931910.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|355652199|ref|ZP_09056634.1| GTP-dependent nucleic acid-binding protein engD [Pseudomonas sp.
2_1_26]
gi|386060830|ref|YP_005977352.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa M18]
gi|392986342|ref|YP_006484929.1| GTP-binding protein YchF [Pseudomonas aeruginosa DK2]
gi|416855499|ref|ZP_11911530.1| GTP-binding protein YchF [Pseudomonas aeruginosa 138244]
gi|418588023|ref|ZP_13152040.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P1]
gi|418590134|ref|ZP_13154049.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P2]
gi|419754579|ref|ZP_14280939.1| GTP-binding protein YchF [Pseudomonas aeruginosa PADK2_CF510]
gi|420141861|ref|ZP_14649500.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CIG1]
gi|421156099|ref|ZP_15615553.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 14886]
gi|421163232|ref|ZP_15621959.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 25324]
gi|421170458|ref|ZP_15628410.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 700888]
gi|421176926|ref|ZP_15634584.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CI27]
gi|421182735|ref|ZP_15640207.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa E2]
gi|421519231|ref|ZP_15965903.1| GTP-binding protein YchF [Pseudomonas aeruginosa PAO579]
gi|424944550|ref|ZP_18360313.1| putative GTP-binding protein [Pseudomonas aeruginosa NCMG1179]
gi|451985061|ref|ZP_21933292.1| GTP-binding and nucleic acid-binding protein YchF [Pseudomonas
aeruginosa 18A]
gi|9950929|gb|AAG08060.1|AE004881_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115588039|gb|ABJ14054.1| putative GTP-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170518|gb|EAZ56029.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218773998|emb|CAW29813.1| putative GTP-binding protein [Pseudomonas aeruginosa LESB58]
gi|334842856|gb|EGM21455.1| GTP-binding protein YchF [Pseudomonas aeruginosa 138244]
gi|346060996|dbj|GAA20879.1| putative GTP-binding protein [Pseudomonas aeruginosa NCMG1179]
gi|347307136|gb|AEO77250.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa M18]
gi|354824407|gb|EHF08658.1| GTP-dependent nucleic acid-binding protein engD [Pseudomonas sp.
2_1_26]
gi|375041163|gb|EHS33876.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P1]
gi|375051085|gb|EHS43558.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P2]
gi|384398992|gb|EIE45395.1| GTP-binding protein YchF [Pseudomonas aeruginosa PADK2_CF510]
gi|392321847|gb|AFM67227.1| GTP-binding protein YchF [Pseudomonas aeruginosa DK2]
gi|403245418|gb|EJY59235.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CIG1]
gi|404346216|gb|EJZ72567.1| GTP-binding protein YchF [Pseudomonas aeruginosa PAO579]
gi|404519478|gb|EKA30230.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 14886]
gi|404523396|gb|EKA33820.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 700888]
gi|404529480|gb|EKA39516.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 25324]
gi|404530296|gb|EKA40303.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CI27]
gi|404541481|gb|EKA50838.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa E2]
gi|451757235|emb|CCQ85815.1| GTP-binding and nucleic acid-binding protein YchF [Pseudomonas
aeruginosa 18A]
gi|453042723|gb|EME90462.1| GTP-binding protein YchF [Pseudomonas aeruginosa PA21_ST175]
Length = 366
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/350 (52%), Positives = 250/350 (71%), Gaps = 10/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PD RL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDARLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV+ V
Sbjct: 60 PERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVSNSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DPK D+++I+LEL+F+DLD EK+++K+ + + L A+KA LEK+ +GK
Sbjct: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKEAL---AQKALLEKLIPHFTEGK 176
Query: 235 PARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
PARS+ L D E+ ++ LLT KP++Y+ANVAE + NPH++ V +A + +
Sbjct: 177 PARSLLKNLGDEEKRLVRSFHLLTSKPVMYIANVAEDGFEN---NPHLDVVKAIAEEEGA 233
Query: 293 GRVTISAQVEAELTELP-SEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
V + ++EAE+ EL EE+ +L SLG+ E GL +IR+ Y LL L+TYFT+G KE
Sbjct: 234 VVVPVCNKIEAEIAELEDGEEKDMFLESLGLEEPGLNRVIRAGYGLLNLQTYFTAGVKEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT+R G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G
Sbjct: 294 RAWTVRVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFIQFKGEQGAKEAG 343
>gi|335029785|ref|ZP_08523289.1| GTP-binding protein YchF [Streptococcus infantis SK1076]
gi|334268193|gb|EGL86637.1| GTP-binding protein YchF [Streptococcus infantis SK1076]
Length = 371
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 250/353 (70%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ + KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A
Sbjct: 176 VLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPESIDYVKQIREFAE 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G
Sbjct: 296 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAG 348
>gi|418324514|ref|ZP_12935751.1| GTP-binding protein YchF [Staphylococcus pettenkoferi VCU012]
gi|365225931|gb|EHM67167.1| GTP-binding protein YchF [Staphylococcus pettenkoferi VCU012]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/378 (49%), Positives = 256/378 (67%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL VL+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLGVLTDMVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D++VIN+ELV +DL+ +EKR+ KL+K + KD + + E L +I++ L G
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPKLEKMARQKDKNA----ENEVRILTRIKETLEAG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+P RS+ + ++ + Q LLT K ++Y+ANV E ++ D N V + A + S
Sbjct: 176 QPVRSLEFDAEDQKFVNQAQLLTSKQMLYIANVGEDEIGDD-DNEKVKAIREYAENEGSS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA+VE E+ L E+R +L LG+ E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKVEEEIATLDDEDRDMFLEDLGLEEPGLNRLIRTTYDLLGLATYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT R GMTAPQ AGVIH+DFE+GFIRAE +Y+D+V A+E G + L
Sbjct: 295 WTFRKGMTAPQCAGVIHTDFERGFIRAEVTSYEDYVEYNGENGAKEAG-------KQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDVVHFRFNV 365
>gi|330718088|ref|ZP_08312688.1| GTPase, translation factor [Leuconostoc fallax KCTC 3537]
Length = 367
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 251/347 (72%), Gaps = 3/347 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDARLARIQEMVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F++++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLDNIRQVNAIVHVVRAFDNDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
+P D+D IN EL+ +DL+ I+KR +++K +AK+++ K AE A LEKI+ L GK
Sbjct: 120 NPLDDIDTINTELILADLETIDKRFSRVEK-QAKNAKDK-DAIAELAVLEKIKPTLESGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R++T N+ E +K L LLT KP++YVAN++E D+++P ++ + + A+ +
Sbjct: 178 SVRTLTFNEEELLIVKGLFLLTSKPVLYVANISEDDMSNPEASDYFKTIQEFAATEGADV 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ +SA E E+ +L +E+ +YL G+ E GL LIR+ Y LL LRT+FT+G KET+AW
Sbjct: 238 IGLSASAEEEIAQLDDDEKGDYLELAGIEEPGLNKLIRAAYHLLDLRTFFTAGGKETRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T +AGM APQ AGVIHSDFE+GFIRAET+++DD GS+ A RE G
Sbjct: 298 TFKAGMKAPQVAGVIHSDFERGFIRAETISFDDLDQYGSVKAVREAG 344
>gi|121607462|ref|YP_995269.1| GTP-binding protein YchF [Verminephrobacter eiseniae EF01-2]
gi|121552102|gb|ABM56251.1| GTP-binding protein YchF [Verminephrobacter eiseniae EF01-2]
Length = 364
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/349 (53%), Positives = 244/349 (69%), Gaps = 10/349 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V +PDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVELPDPRLGQLAAIVA 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK--AALEKIQQALMD 232
DP SD++VI EL +D+ +EK + + K ++S +DA + A L +I+ AL
Sbjct: 120 DPISDIEVIQTELCLADMATVEKALNR----HTKAAKSGNDKDAARLVALLTRIRTALNQ 175
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G PARSV L E+ +K LCL+T KP ++VANV E + NP + + A+ +
Sbjct: 176 GLPARSVDLAKEEQPLLKPLCLITAKPTMFVANVGEDGFRN---NPFLERLNEYAASQNA 232
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V I A++EAE+ E+ +R +LA +G SE GL LIR + LLGL+TYFT+G KE +
Sbjct: 233 PVVAICAKMEAEMAEMSDADRQLFLAEMGQSEPGLARLIRGAFKLLGLQTYFTAGVKEVR 292
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH DFE+GFIRA+T+A+DDF+A AR+ G
Sbjct: 293 AWTIPIGATAPQAAGVIHGDFERGFIRAQTIAFDDFIACQGEQGARDAG 341
>gi|319787940|ref|YP_004147415.1| GTP-binding protein YchF [Pseudoxanthomonas suwonensis 11-1]
gi|317466452|gb|ADV28184.1| GTP-binding protein YchF [Pseudoxanthomonas suwonensis 11-1]
Length = 363
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 197/350 (56%), Positives = 252/350 (72%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP SD++ I+ EL +DLD +EK R E+ KG K++Q++ K L K+Q AL
Sbjct: 120 DPLSDIETIDTELALADLDSVEKALNRAERSAKGGDKEAQAR------KPVLLKLQAALG 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+G+ ARS L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A
Sbjct: 174 EGRSARSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGF---DNNPHLDAVRAHAQAEG 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE
Sbjct: 231 AEVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWT++AG TAPQAA VIH+DFEKGFIRAET+AYDDF+ A ARE G
Sbjct: 291 RAWTVKAGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYRGEAGAREAG 340
>gi|336426138|ref|ZP_08606151.1| GTP-binding protein YchF [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336011096|gb|EGN41064.1| GTP-binding protein YchF [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/351 (54%), Positives = 260/351 (74%), Gaps = 11/351 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIV VPD RL +L + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVTVPDERLKLLGDMYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED+++VHV+G ++P
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDDNVVHVDGNINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA--LEKIQQALMDGK 234
D++ INLEL+FSD++ +E+R+ K+ K Q+++ + A K A LE+++ L DGK
Sbjct: 120 LRDIETINLELIFSDIEILERRIAKVGK------QARMDKTAAKEAALLERVKALLEDGK 173
Query: 235 PARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQS 292
A + D + ++I L LLT KP+IY ANV+E DLAD G SN V V A++ S
Sbjct: 174 LAMAFQPEDEDEETIFASLNLLTAKPVIYAANVSEDDLADDGASNAGVAAVREYAAESGS 233
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
G I AQ+E E++EL +E+ +L LG+ ESGL L++++Y LLGL ++ TSGE ET+
Sbjct: 234 GVFVICAQIEEEISELEEDEKAMFLEDLGLKESGLDKLVKASYKLLGLISFLTSGEDETR 293
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
AWTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKGLV
Sbjct: 294 AWTIKIGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLEQGSLAAAREKGLV 344
>gi|420181775|ref|ZP_14687936.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM049]
gi|394251006|gb|EJD96131.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM049]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/378 (48%), Positives = 258/378 (68%), Gaps = 14/378 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DG
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM----ELRILTQIKEALEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KP RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 176 KPVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSE 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ ISA++E E+ L E++ +L L + E GL LIR+TY LLGL TYFT+G +E +A
Sbjct: 235 VIVISAKIEEEIATLDDEDKEMFLEDLDIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G + L
Sbjct: 295 WTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAG-------RQRLE 347
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 348 GKDYIMQDGDIVHFRFNV 365
>gi|182417145|ref|ZP_02948518.1| GTP-binding protein YchF [Clostridium butyricum 5521]
gi|237668098|ref|ZP_04528082.1| GTP-binding protein YchF [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378987|gb|EDT76493.1| GTP-binding protein YchF [Clostridium butyricum 5521]
gi|237656446|gb|EEP54002.1| GTP-binding protein YchF [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 250/347 (72%), Gaps = 7/347 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFL++IREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLANIREVAAIVHVVRCFDDENVVHVEGNVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
D++ INLEL+FSDL+ +E+RMEK +K ++ D +K E A +EKI++ L KP
Sbjct: 120 IRDIETINLELIFSDLEMLERRMEKSVKLVRSGDKNAKF----EYAIMEKIKEQLEANKP 175
Query: 236 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 294
AR++ D E+ +K L L+T KP++Y N++E D+ + N +V +V A S
Sbjct: 176 ARTLEFTDEEQVFVKSLFLITSKPVLYACNISEDDVMEGNFDNDYVKKVKEYAISESSEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ +SA++E E++ L +E+VE L+ G+ ESGL LI ++Y LLGL +Y T+G +E +AW
Sbjct: 236 MVVSAKIEEEMSGLEDDEKVEILSEYGLEESGLDKLIETSYRLLGLMSYLTAGVQEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
TI+ G APQAAG IHSD E+GFIRAE V YDD V GS AAA+E G
Sbjct: 296 TIKRGTKAPQAAGKIHSDIERGFIRAEVVGYDDLVECGSEAAAKEHG 342
>gi|76788043|ref|YP_328733.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae A909]
gi|77405626|ref|ZP_00782715.1| GTP-binding protein YchF [Streptococcus agalactiae H36B]
gi|77407685|ref|ZP_00784440.1| GTP-binding protein YchF [Streptococcus agalactiae COH1]
gi|77411310|ref|ZP_00787659.1| GTP-binding protein YchF [Streptococcus agalactiae CJB111]
gi|339300347|ref|ZP_08649503.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae ATCC 13813]
gi|406708529|ref|YP_006763255.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae GD201008-001]
gi|410593716|ref|YP_006950443.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
agalactiae SA20-06]
gi|417006561|ref|ZP_11945131.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae FSL S3-026]
gi|421147717|ref|ZP_15607398.1| GTP-binding protein YchF [Streptococcus agalactiae GB00112]
gi|421532764|ref|ZP_15979112.1| GTP-binding protein YchF [Streptococcus agalactiae STIR-CD-17]
gi|424048444|ref|ZP_17785995.1| GTP-binding protein YchF [Streptococcus agalactiae ZQ0910]
gi|76563100|gb|ABA45684.1| GTP-binding protein YchF [Streptococcus agalactiae A909]
gi|77162646|gb|EAO73608.1| GTP-binding protein YchF [Streptococcus agalactiae CJB111]
gi|77173684|gb|EAO76798.1| GTP-binding protein YchF [Streptococcus agalactiae COH1]
gi|77175770|gb|EAO78550.1| GTP-binding protein YchF [Streptococcus agalactiae H36B]
gi|319746179|gb|EFV98449.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae ATCC 13813]
gi|341576742|gb|EGS27153.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae FSL S3-026]
gi|389650034|gb|EIM71504.1| GTP-binding protein YchF [Streptococcus agalactiae ZQ0910]
gi|401685570|gb|EJS81569.1| GTP-binding protein YchF [Streptococcus agalactiae GB00112]
gi|403641941|gb|EJZ02844.1| GTP-binding protein YchF [Streptococcus agalactiae STIR-CD-17]
gi|406649414|gb|AFS44815.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae GD201008-001]
gi|410517355|gb|AFV71499.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
agalactiae SA20-06]
Length = 371
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 251/353 (71%), Gaps = 11/353 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228
VDP +D+D INLEL+ +DL+ I KR +++K KD +S AE L+KI+
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKDKESV----AEFNVLQKIKP 175
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
L DGK AR++ + E +K L LLT KP++YVANV E +ADP +VN++ A
Sbjct: 176 VLEDGKSARTIEFTEEEAKVVKGLFLLTTKPVLYVANVDEDKVADPDDIDYVNQIRAFAE 235
Query: 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TESAEVVVISARAEEEISELDDEDKLEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 349 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
KE +AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G
Sbjct: 296 KEVRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIQYGSEKAVKEAG 348
>gi|30249777|ref|NP_841847.1| GTP-dependent nucleic acid-binding protein EngD [Nitrosomonas
europaea ATCC 19718]
gi|30180814|emb|CAD85734.1| GTP1/OBG family:Conserved hypothetical protein 92 [Nitrosomonas
europaea ATCC 19718]
Length = 363
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 191/349 (54%), Positives = 251/349 (71%), Gaps = 11/349 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPD RL LS +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDSRLTELSRIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHV GKV
Sbjct: 60 PQRVQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQS-KLKEDAEKAALEKIQQALMD 232
DP +D++VI EL +DL ++K + + KK K+ D ++ KL LEK+ L
Sbjct: 120 DPLADIEVILTELALADLATVDKAIARDGKKAKSGDKEAIKL-----VTVLEKLIPHLNQ 174
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
G+PAR+ L++ E++ I+ LCLLT+KP +YV NV E + NP+++ + A+ +
Sbjct: 175 GQPARTFPLSNEEKEIIRPLCLLTIKPAMYVGNVLEDGFEN---NPYLDRLREYAAKENA 231
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V + A++EAEL +L ++ E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVALCAKIEAELADLDEADKKEFLADLGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTI G TAPQAAGVIH+DFEKGFIRA+TV+Y DF+A G A A+EKG
Sbjct: 292 AWTIHKGNTAPQAAGVIHTDFEKGFIRAQTVSYADFIACGGEAGAKEKG 340
>gi|407794328|ref|ZP_11141355.1| GTP-binding protein YchF [Idiomarina xiamenensis 10-D-4]
gi|407212928|gb|EKE82789.1| GTP-binding protein YchF [Idiomarina xiamenensis 10-D-4]
Length = 363
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/378 (50%), Positives = 255/378 (67%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPD RL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDSRLQKLADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGASQGEGLGNKFL++IRE D+I VVRCFE+++IVHVNG +
Sbjct: 60 PQRVLPTTMEFVDIAGLVKGASQGEGLGNKFLANIRETDAIGHVVRCFENDNIVHVNGTI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL +DLD ++K + +L K+ K D Q+K AE A LEK++ L +G
Sbjct: 120 DPLDDIDTINTELALADLDSVDKALLRLAKRAKGGDKQAK----AEIAVLEKVKPVLDEG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
K ARSV L+ + +I+ LLT+KP +Y+ANV E +NP +++V LA+ +
Sbjct: 176 KMARSVGLDKDDLATIRSYNLLTLKPTMYIANVNEDGFE---NNPFLDKVRELAAGENAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL EE+ ++LA LG SE GL +IR Y LL L+TYFT+G KE +A
Sbjct: 233 VVPVCAAIESEIAELDDEEKADFLAELGQSEPGLNRVIRGGYELLNLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WTI G TAPQAAG IH+DFEKGFIRAE V Y D++ A++ G W L
Sbjct: 293 WTIPVGATAPQAAGRIHTDFEKGFIRAEVVGYQDYIEFNGEQGAKDAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
+Y + ++ + F++
Sbjct: 346 GKEYIVKDGDVIHFRFNV 363
>gi|366089672|ref|ZP_09456038.1| GTP-binding protein YchF [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/347 (52%), Positives = 251/347 (72%), Gaps = 3/347 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLQRIDEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D+++ HV+ K+
Sbjct: 60 AKKIIHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNVTHVSNKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
P D+D INLELV +DL+ + KR K++K A+ ++ K + AE LEKI+ L GK
Sbjct: 120 APLDDIDTINLELVLADLEAVNKRYAKVEK-VARTTKDK-EAVAEFKVLEKIKPVLEAGK 177
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
R++ N+ E+ +K L LLT KP++YVAN+AE D+ADP ++ + EV + A+ S
Sbjct: 178 SVRTLEFNEDEQKIVKGLFLLTAKPVLYVANIAEEDMADPEASKYFKEVQDFAASEGSEA 237
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ + AQ E E+ EL ++R ++L + GV ESGL LI+++Y LLGL T+FT+G KET+AW
Sbjct: 238 LAVCAQTEEEIAELDDDDRQDFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRAW 297
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
T + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G
Sbjct: 298 TFKKGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAG 344
>gi|325293591|ref|YP_004279455.1| GTP-dependent nucleic acid-binding protein engD [Agrobacterium sp.
H13-3]
gi|418407217|ref|ZP_12980535.1| GTP-binding protein YchF [Agrobacterium tumefaciens 5A]
gi|325061444|gb|ADY65135.1| GTP-dependent nucleic acid-binding protein engD [Agrobacterium sp.
H13-3]
gi|358006361|gb|EHJ98685.1| GTP-binding protein YchF [Agrobacterium tumefaciens 5A]
Length = 367
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 249/350 (71%), Gaps = 9/350 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQQLAAIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGNKFL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D D I EL+ +DL+ +E+R+E+ K+ +KD +S A+ +E + L DG
Sbjct: 121 NPVGDADTIETELMLADLESLERRVEQTRKRATSKDKESL----AQLPVMEAVIALLNDG 176
Query: 234 KPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
KPAR + TL D E + +K L LLT P++YV NV+E+D + N H V +A
Sbjct: 177 KPARLLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADAST--GNEHTAAVAEMAKQQG 234
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V ISA +EAE+ +LP++E E+L++LG++E+GL LIR+ Y LL L TYFT G KET
Sbjct: 235 AECVIISAAIEAEVAQLPADEAEEFLSALGLTEAGLDRLIRAGYHLLDLITYFTVGPKET 294
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G AP AAGVIH+DFE+GFIRA T+AYDD++A A+E G
Sbjct: 295 RAWTIVRGTKAPAAAGVIHTDFERGFIRAFTIAYDDYIAYKGEVGAKEAG 344
>gi|339639768|ref|ZP_08661212.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453037|gb|EGP65652.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 371
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 252/355 (70%), Gaps = 15/355 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDERLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKI 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEKMARTQKDKDSV------AEFNVLQKI 173
Query: 227 QQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286
+ L DG AR++ + E+ +K L LLT KP++YVANV E ++ADP + +V ++
Sbjct: 174 KPVLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVGEDEVADPDNIDYVKQIRTF 233
Query: 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346
A+ + V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+
Sbjct: 234 AATENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTA 293
Query: 347 GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G
Sbjct: 294 GEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAG 348
>gi|114769267|ref|ZP_01446893.1| GTP-binding protein YchF [Rhodobacterales bacterium HTCC2255]
gi|114550184|gb|EAU53065.1| GTP-binding protein YchF [Rhodobacterales bacterium HTCC2255]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 244/348 (70%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVG+PNVGKSTLFNA+ AQAANFPFCTIEPN G V+VPD RL +LS ++
Sbjct: 1 MGFKTGIVGMPNVGKSTLFNALTRTAAAQAANFPFCTIEPNTGEVSVPDERLDLLSQIAS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +PA + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCF+D+D+ HV+G+V
Sbjct: 61 SKTIIPARMTFVDIAGLVKGASKGEGLGNQFLANIRECDAIAHVLRCFDDDDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
+P D + I EL+ +DL+ IEKRM+ L +K K D + ++ D L + ++AL G
Sbjct: 121 NPIEDAETIETELMLADLENIEKRMQGLVRKIKGGDKDAVMQND----LLSRAKEALEAG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
PAR+ ++ E KQL LLT KP++YV NV E D A G N H + V +A+D +
Sbjct: 177 MPARTCVIDSDEEKQWKQLTLLTAKPVLYVCNV-EEDNAGKG-NTHSDAVAKMAADQGAA 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA +E E+++L S+E +L LG+ E+GL LI + Y LLGL+TYFT G KE +A
Sbjct: 235 SVVISAAIEEEISQLDSDEAEMFLNELGLKEAGLDRLIAAGYELLGLQTYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR +APQAAGVIH DFE+GFIRAET+A++D+V A+EKG
Sbjct: 295 WTIRKNTSAPQAAGVIHGDFERGFIRAETIAFNDYVECNGEQGAKEKG 342
>gi|319639343|ref|ZP_07994094.1| GTP-binding protein [Neisseria mucosa C102]
gi|317399527|gb|EFV80197.1| GTP-binding protein [Neisseria mucosa C102]
Length = 363
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/350 (54%), Positives = 248/350 (70%), Gaps = 13/350 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
DP +D++ I EL +DL +EK R EK + KD+Q KL E +K+ L
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVE-----LCKKLLPHLD 173
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKP RS L+ E +K L LLT KP +YV NV+E + NPH++ + LA
Sbjct: 174 EGKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAEKEN 230
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE
Sbjct: 231 APVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEV 290
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
+AWTI G TAPQAAGVIH+DFE+GFIRA+ ++Y+DF+A G A A+E G
Sbjct: 291 RAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAG 340
>gi|172059041|ref|YP_001815501.1| GTP-binding protein YchF [Exiguobacterium sibiricum 255-15]
gi|171991562|gb|ACB62484.1| GTP-binding protein YchF [Exiguobacterium sibiricum 255-15]
Length = 366
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/374 (51%), Positives = 255/374 (68%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDARLRKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICQVVRCFIDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMDG 233
P D++ INLEL+ +DL+ +EKR+++++K K++D + E ALE + L D
Sbjct: 120 SPIDDIETINLELILADLELVEKRIQRVQKQVKSRDKNAA----GELEALEIVLALLEDE 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR L + + +K LLTMKP++YVANV E ++AD SN +V V A+ +
Sbjct: 176 KPARLAELTEDQAAIVKHFQLLTMKPMLYVANVGEDEVADADSNENVRLVREFAAKEGAE 235
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
+ I A++E E+ EL EER E+L LG+ ESGL LI + Y+ LGL TYFT+GEKE +A
Sbjct: 236 VIIICARIEEEIAELEPEERQEFLVDLGIEESGLDQLIHAAYNTLGLATYFTAGEKEVRA 295
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT + GM APQ AGVIHSDFE+GFIRAE VAY+D AAG++A +E+G Y
Sbjct: 296 WTFKKGMKAPQCAGVIHSDFERGFIRAEVVAYEDLAAAGNMATVKEQG-----RYRSEGK 350
Query: 414 SYKYFHWNSYMLRY 427
Y + + R+
Sbjct: 351 EYVFQDGDVVTFRF 364
>gi|42525821|ref|NP_970919.1| GTP-dependent nucleic acid-binding protein EngD [Treponema
denticola ATCC 35405]
gi|422340663|ref|ZP_16421604.1| GTP-binding protein YchF [Treponema denticola F0402]
gi|449106272|ref|ZP_21742940.1| GTP-binding protein YchF [Treponema denticola ASLM]
gi|449107933|ref|ZP_21744578.1| GTP-binding protein YchF [Treponema denticola ATCC 33520]
gi|449110464|ref|ZP_21747065.1| GTP-binding protein YchF [Treponema denticola ATCC 33521]
gi|449114728|ref|ZP_21751203.1| GTP-binding protein YchF [Treponema denticola ATCC 35404]
gi|449117299|ref|ZP_21753741.1| GTP-binding protein YchF [Treponema denticola H-22]
gi|449118615|ref|ZP_21755020.1| GTP-binding protein YchF [Treponema denticola H1-T]
gi|449121009|ref|ZP_21757362.1| GTP-binding protein YchF [Treponema denticola MYR-T]
gi|449125112|ref|ZP_21761428.1| GTP-binding protein YchF [Treponema denticola OTK]
gi|451967984|ref|ZP_21921213.1| GTP-binding protein YchF [Treponema denticola US-Trep]
gi|41815871|gb|AAS10800.1| GTP-binding protein YchF [Treponema denticola ATCC 35405]
gi|325475503|gb|EGC78684.1| GTP-binding protein YchF [Treponema denticola F0402]
gi|448940296|gb|EMB21205.1| GTP-binding protein YchF [Treponema denticola OTK]
gi|448951662|gb|EMB32473.1| GTP-binding protein YchF [Treponema denticola MYR-T]
gi|448951692|gb|EMB32502.1| GTP-binding protein YchF [Treponema denticola H-22]
gi|448952557|gb|EMB33360.1| GTP-binding protein YchF [Treponema denticola H1-T]
gi|448955549|gb|EMB36315.1| GTP-binding protein YchF [Treponema denticola ATCC 35404]
gi|448960387|gb|EMB41100.1| GTP-binding protein YchF [Treponema denticola ATCC 33521]
gi|448962302|gb|EMB42993.1| GTP-binding protein YchF [Treponema denticola ATCC 33520]
gi|448965467|gb|EMB46130.1| GTP-binding protein YchF [Treponema denticola ASLM]
gi|451703362|gb|EMD57737.1| GTP-binding protein YchF [Treponema denticola US-Trep]
Length = 368
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 247/348 (70%), Gaps = 4/348 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M++ GIVGLPNVGKST+F+A+ + A+AAN+PFCTI PNVGIV++PD RL L+
Sbjct: 1 MAINCGIVGLPNVGKSTIFSALT-SAPAEAANYPFCTINPNVGIVSLPDARLKKLAEHFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +PA+VEFVDIAGLVKGAS+GEGLGN+FLSHIREV I VVRCF+++DIVHV+GK+
Sbjct: 60 PKKVIPATVEFVDIAGLVKGASKGEGLGNQFLSHIREVGVIAHVVRCFDNDDIVHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP SD++ IN+EL +DL ++KR E+ +K +++ + A+EKI+ L +GK
Sbjct: 120 DPASDIETINIELALADLASLDKRAERAEKASRMGKEAQKEAAVVMRAIEKIRPLLQEGK 179
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
AR L D ER +I L+TMKP +YV NV E+ D SNP++ V +A +
Sbjct: 180 GARLADLTDDERAAIYDTHLITMKPQMYVCNVDETGAQD--SNPYIAAVKKIAESEGADT 237
Query: 295 VTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V I + EAEL +L S EER+ +LA +G+ ESGL L R+ Y L+GLRT+FT+GE E +A
Sbjct: 238 VVICGKFEAELADLESEEERLSFLAEVGLEESGLSQLARAAYHLIGLRTFFTAGEDECRA 297
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI AG TAP+AAGVIH+DFEKGFI+AE ++DDFV GS +E G
Sbjct: 298 WTIHAGDTAPKAAGVIHTDFEKGFIKAEVYSFDDFVKYGSEQKIKEAG 345
>gi|153815666|ref|ZP_01968334.1| hypothetical protein RUMTOR_01902 [Ruminococcus torques ATCC 27756]
gi|317501940|ref|ZP_07960124.1| GTP-binding protein YchF [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088245|ref|ZP_08337164.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336440081|ref|ZP_08619680.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145846907|gb|EDK23825.1| GTP-binding protein YchF [Ruminococcus torques ATCC 27756]
gi|316896620|gb|EFV18707.1| GTP-binding protein YchF [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408489|gb|EGG87955.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014430|gb|EGN44279.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 255/349 (73%), Gaps = 7/349 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+ +IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENTNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236
D++ INLEL+FSDL+ +E+R+ K K D + + D L +++ L D K A
Sbjct: 120 IRDIETINLELIFSDLEILERRIAKTVKLSRNDKAAAKELD----LLNRVKAHLEDNKMA 175
Query: 237 RS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSGR 294
+S VT ++ E++ + LLT KP+I+ ANV+E DLAD G+N V V A+
Sbjct: 176 KSFVTDDEDEQEWLASYNLLTAKPVIFAANVSEDDLADDGANNEGVKAVREYAASEDCEV 235
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 354
+ A++E E+++L +E+ +L LG+ ESGL LIR++Y LLGL +Y T+GE E +AW
Sbjct: 236 FVVCAEIEEEISQLDDDEKAMFLEELGLKESGLEKLIRASYHLLGLISYLTAGEPEVRAW 295
Query: 355 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
TI+ G APQAAG IH+DFE+GFIRAE V+YDD +A G+ AAA+EKGLV
Sbjct: 296 TIKRGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMACGTHAAAKEKGLV 344
>gi|414163816|ref|ZP_11420063.1| GTP-binding protein YchF [Afipia felis ATCC 53690]
gi|410881596|gb|EKS29436.1| GTP-binding protein YchF [Afipia felis ATCC 53690]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/348 (53%), Positives = 239/348 (68%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLAAVAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD++ VVRCFED+DI HV G++
Sbjct: 61 SAQIIPTQLTFVDIAGLVKGASKGEGLGNQFLATIREVDAVAHVVRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
P +D++ I EL+ +DL+ +EKR++ L KK K D SK + D +E+ + L DG
Sbjct: 121 APLADIETIETELMLADLESLEKRVDNLSKKAKGGDKDSKEQLD----LVERALKLLRDG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR + E + + L LLT KP++YV NV E A N V A +
Sbjct: 177 KPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAA--AGNAFSQAVFEHAQKEGAV 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISA++E+E+ L EER ++L++L + E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 AVVISAKIESEIATLSREERADFLSTLELEEAGLDRLIRAGYDLLHLITYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI G AP AAGVIH+DFEKGFIRAET+AYDD+V G A AR+ G
Sbjct: 295 WTITKGTKAPGAAGVIHTDFEKGFIRAETIAYDDYVTLGGEAGARDAG 342
>gi|296114648|ref|ZP_06833301.1| GTP-dependent nucleic acid-binding protein EngD [Gluconacetobacter
hansenii ATCC 23769]
gi|295979004|gb|EFG85729.1| GTP-dependent nucleic acid-binding protein EngD [Gluconacetobacter
hansenii ATCC 23769]
Length = 364
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/348 (53%), Positives = 248/348 (71%), Gaps = 8/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETASAQAANYPFCTIEPNVGRVAVPDPRLAELARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKILPTSLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D ++I EL+ +DL+ +EKR+ L KK + D ++ A+ +E + AL +G
Sbjct: 121 DPLRDAEIIETELMLADLESLEKRIVALQKKARGNDREAA----AQVELMEPLIAALREG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
+PAR+ + + +++++L L+T KP++YV NV E A N ++V A +
Sbjct: 177 QPART-AIPAGQEEAVRRLNLMTSKPVLYVCNVDEGSAAT--GNAFSDKVRARAEAEGAA 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V +SA +EAE+++L +E+R E+L LG+S+SGL +I + Y LLGL TYFT G KET+A
Sbjct: 234 VVIVSAAIEAEVSQLGAEDRAEFLDGLGLSDSGLDRVIAAGYRLLGLSTYFTVGPKETRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTI AGM APQAA VIH+DFE+GFI ETVAYDD++ A A+E G
Sbjct: 294 WTITAGMRAPQAAAVIHNDFERGFIACETVAYDDYIQCNGEAGAKEAG 341
>gi|399991708|ref|YP_006571948.1| GTP-dependent nucleic acid-binding protein EngD [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398656263|gb|AFO90229.1| GTP-dependent nucleic acid-binding protein EngD [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/348 (53%), Positives = 243/348 (69%), Gaps = 7/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGASQGEGLGN+FL++IRE D+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASQGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP +D +VI EL+ SDL+ IEKR L +K K D +++ ++ L Q L +G
Sbjct: 121 DPVADAEVIETELMLSDLESIEKRRANLVRKLKGNDKEAQQQD----RLLADAQAMLEEG 176
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
KPAR V ++ + + K L LLT KP++YV NV ES+ + N + +V +A+ +
Sbjct: 177 KPARLVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVE--GNEYSAKVAEMAAGQGNS 234
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V ISAQ+E E+++L EE +L+ +G++E+GL LIR+ Y LL L TYFT G KE +A
Sbjct: 235 HVIISAQIEEEISQLEPEEAEMFLSEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEARA 294
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WTIR G APQAAGVIH DFEKGFIRAET+AY+DF+A A+E G
Sbjct: 295 WTIRTGTAAPQAAGVIHGDFEKGFIRAETIAYEDFIAHNGEQGAKEAG 342
>gi|400753347|ref|YP_006561715.1| GTP-dependent nucleic acid-binding protein EngD [Phaeobacter
gallaeciensis 2.10]
gi|398652500|gb|AFO86470.1| GTP-dependent nucleic acid-binding protein EngD [Phaeobacter
gallaeciensis 2.10]
Length = 403
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 243/349 (69%), Gaps = 7/349 (2%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ ++
Sbjct: 38 GMGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLDKLAAIA 97
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S++ +P + FVDIAGLVKGASQGEGLGN+FL++IRE D+I V+RCFED D+ HV+G+
Sbjct: 98 GSKQIIPTRMTFVDIAGLVKGASQGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGR 157
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD 232
VDP +D +VI EL+ SDL+ IEKR L +K K D +++ ++ L Q L +
Sbjct: 158 VDPVADAEVIETELMLSDLESIEKRRANLVRKLKGNDKEAQQQDR----LLADAQAMLEE 213
Query: 233 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
GKPAR V ++ + + K L LLT KP++YV NV ES+ + N + +V +A+ +
Sbjct: 214 GKPARLVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVE--GNEYSAKVAEMAAGQGN 271
Query: 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 352
V ISAQ+E E+++L EE +L+ +G++E+GL LIR+ Y LL L TYFT G KE +
Sbjct: 272 SHVIISAQIEEEISQLEPEEAEMFLSEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEAR 331
Query: 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
AWTIR G APQAAGVIH DFEKGFIRAET+AY+DF+A A+E G
Sbjct: 332 AWTIRTGTAAPQAAGVIHGDFEKGFIRAETIAYEDFIAHNGEQGAKEAG 380
>gi|365920142|ref|ZP_09444494.1| GTP-binding protein YchF [Cardiobacterium valvarum F0432]
gi|364578500|gb|EHM55702.1| GTP-binding protein YchF [Cardiobacterium valvarum F0432]
Length = 364
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 250/348 (71%), Gaps = 8/348 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ N A N+PFCTIEPN GIV +PDPRL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALT-NAGIDAQNYPFCTIEPNTGIVYMPDPRLNALAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I QVVRCF+++D+VHV GK+
Sbjct: 60 PERVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAQVVRCFDNDDVVHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP SD+ VI EL+ +D+ +EK ++L + K D +KLK D + ++ L DG
Sbjct: 120 DPLSDIQVIESELILADMASLEKAQQRLTRVAKGGDKDAKLKLD----IIARLTPHLEDG 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
AR++ L D E+ ++++L LLTMKP++YVANV E+ + G N +V +V + A+ +
Sbjct: 176 NLARTLPLADEEKKALRELFLLTMKPMMYVANVDEAHIN--GDNTYVQQVRDKAAQSGAV 233
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
VT+ A +EAEL++L +E+ E LAS G++E GL +IR+ Y LLGL TYFT+G KE +A
Sbjct: 234 VVTVCAAIEAELSQLEGDEQSELLASYGLAEPGLNRVIRAGYDLLGLGTYFTAGVKEVRA 293
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
WT+ A TAPQAAGVIH+DFE+GFIRAE +AYDDF+ A A+E G
Sbjct: 294 WTMPANATAPQAAGVIHTDFERGFIRAEVIAYDDFIRYHGEAGAKEAG 341
>gi|443473464|ref|ZP_21063488.1| GTP-binding and nucleic acid-binding protein YchF [Pseudomonas
pseudoalcaligenes KF707]
gi|442904201|gb|ELS29317.1| GTP-binding and nucleic acid-binding protein YchF [Pseudomonas
pseudoalcaligenes KF707]
Length = 366
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/380 (49%), Positives = 262/380 (68%), Gaps = 17/380 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PDPRL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDPRLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV+ V
Sbjct: 60 PERVIPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVSNSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DPK D+++I+LEL+F+DLD EK+++K+ + + L A+KA LEK+ +GK
Sbjct: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAL---AQKALLEKLIPHFSEGK 176
Query: 235 PARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292
PARS+ L + E+ ++ LLT KP++Y+ANVAE + NPH++ V +A + +
Sbjct: 177 PARSLLKNLGEEEKRLVRGFHLLTSKPVMYIANVAEDGFEN---NPHLDVVRAIAEEEGA 233
Query: 293 GRVTISAQVEAELTEL-PSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
V + ++EAE+ EL EE+ +L +LG+ E GL +IR+ Y LL L+TYFT+G KE
Sbjct: 234 IVVPVCNKIEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYDLLNLQTYFTAGVKEV 293
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEH 411
+AWT+R G TAPQAA VIH+DFEKGFIRAE VAYDDF+ A A+E G W
Sbjct: 294 RAWTVRVGATAPQAAAVIHTDFEKGFIRAEVVAYDDFIQFKGEAGAKEAG--KW-----R 346
Query: 412 LASYKYFHWNSYMLRYFFSL 431
L +Y + ++ + F++
Sbjct: 347 LEGKEYIVKDGDVMHFRFNV 366
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,784,575,747
Number of Sequences: 23463169
Number of extensions: 282864746
Number of successful extensions: 1084195
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7084
Number of HSP's successfully gapped in prelim test: 4994
Number of HSP's that attempted gapping in prelim test: 1053638
Number of HSP's gapped (non-prelim): 12940
length of query: 454
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 308
effective length of database: 8,933,572,693
effective search space: 2751540389444
effective search space used: 2751540389444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)