BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012870
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 182/378 (48%), Positives = 253/378 (66%), Gaps = 16/378 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPN G+V +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE++DIVHV GK+
Sbjct: 60 PERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL +DLD E+ +++L K+ K D ++K E + +EKI L +
Sbjct: 120 DPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF----ELSVMEKILPVLENA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
RSV L+ E +IK LT+KP +Y+ANV E + NP+++ V +A+ +
Sbjct: 176 GMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFEN---NPYLDRVREIAAKEGAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL EE+VE+L LG+ E GL +IR+ Y+LL L+TYFT+G KE +A
Sbjct: 233 VVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRA 292
Query: 354 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA 413
WT+ G TAP+AA VIH+DFEKGFIRAE +AY+DF+ A+E G W L
Sbjct: 293 WTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAG--KW-----RLE 345
Query: 414 SYKYFHWNSYMLRYFFSL 431
Y + ++ + F++
Sbjct: 346 GKDYIVQDGDVMHFRFNV 363
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/352 (51%), Positives = 234/352 (66%), Gaps = 11/352 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS-GLSKS 115
L GIVGLPNVGKSTLFNA+ A AAN+PF TI+ NVG+V + D RL+ L +K
Sbjct: 2 LAVGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKG 60
Query: 116 QKA---VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
++ VP VEFVDIAGLVKGA +GEGLGN+FL+HIREV +I V+RCF D D+VHV G
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+VDP D +V+ EL+ +DL +E+R+E+L+K +A + L E A E + L
Sbjct: 121 RVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPLLE-----AAEGLYVHLQ 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ ++ +K+ LLT KP+IYVANVAE DL D NP V V A +
Sbjct: 176 EGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAEL EL EE E LA+ G+ ESGL L R+ Y L L T+FT+GEKE
Sbjct: 236 AEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT+R G AP+AAG IHSD E+GFIRAE + +D V AG A A+E+G V
Sbjct: 296 RAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWV 347
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 332 bits (850), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 181/352 (51%), Positives = 234/352 (66%), Gaps = 11/352 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS-GLSKS 115
L GIVGLPNVGKSTLFNA+ A AAN+PF TI+ NVG+V + D RL+ L +K
Sbjct: 2 LAVGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKG 60
Query: 116 QKA---VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
++ VP VEFVDIAGLVKGA +GEGLGN+FL+HIREV +I V+RCF D D+VHV G
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+VDP D +V+ EL+ +DL +E+R+E+L+K +A + L E A E + L
Sbjct: 121 RVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPLLE-----AAEGLYVHLQ 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ ++ +K+ LLT KP+IYVANVAE DL D NP V V A +
Sbjct: 176 EGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAEL EL EE E LA+ G+ ESGL L R+ Y L L T+FT+GEKE
Sbjct: 236 AEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEV 295
Query: 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLV 403
+AWT+R G AP+AAG IHSD E+GFIRAE + +D V AG A A+E+G V
Sbjct: 296 RAWTVRRGTKAPRAAGEIHSDXERGFIRAEVIPWDKLVEAGGWARAKERGWV 347
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 209/354 (59%), Gaps = 9/354 (2%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
+ SL+ GIVGLPNVGKST FN V+ N +A A NFPFCTI+PN V VPD R L
Sbjct: 18 RFGTSLKIGIVGLPNVGKSTFFN-VLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQ 76
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
K +PA + VDIAGLVKGA G+GLGN FLSHI D I + R FED+DI HV
Sbjct: 77 YHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVE 136
Query: 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
G VDP D+++I+ EL D + I ++KL+K + KLK E + K++ ++
Sbjct: 137 GSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK--PEYDIMCKVKSWVI 194
Query: 232 D-GKPARSV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
D KP R ND E + + + LT KP++Y+ N++E D N + ++
Sbjct: 195 DQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR-KKNKWLIKIKEWVDK 253
Query: 290 LQSGRVTI--SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347
G + I S +E +L EL +EER +YL + +++S L +I++ ++ L L +FT+G
Sbjct: 254 YDPGALVIPFSGALELKLQELSAEERQKYLEA-NMTQSALPKIIKAGFAALQLEYFFTAG 312
Query: 348 EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E +AWTIR G APQAAG IH+DFEKGFI AE + Y+DF GS A + G
Sbjct: 313 PDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAG 366
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/352 (42%), Positives = 202/352 (57%), Gaps = 9/352 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L+ GIVG PNVGKST F A+ ++ AN+P+ TI+P VAVPD R L K
Sbjct: 20 NLKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 79
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+ VPA + DIAGL KGAS G GLGN FLSH+R VD+I QVVR F+D +I+HV G VD
Sbjct: 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVD 139
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS---KLKEDAEKAALEKIQQALMD 232
P D+ +I EL+ D + +EK +E L+K ++ + + K K++ E+A +EK+ Q L +
Sbjct: 140 PIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKKE-EQAIIEKVYQYLTE 198
Query: 233 GK-PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
K P R ++ E + I L LLT KP+IY+ N +E D N ++ ++ +
Sbjct: 199 TKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNXSERDFLR-QKNKYLPKIKKWIDENS 257
Query: 292 SGRVTISAQV--EAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
G I V E LT EE +E L ++S L +I + Y+ L L YFT GE
Sbjct: 258 PGDTLIPXSVAFEERLTNFTEEEAIEECKKLN-TKSXLPKIIVTGYNALNLINYFTCGED 316
Query: 350 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401
E ++WTIR G APQAAGVIH+DFEK F+ E Y D + A R G
Sbjct: 317 EVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIXHYQDLFDYKTENACRAAG 368
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 66/127 (51%), Gaps = 21/127 (16%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-AVPDPRLHVLSGLSKSQK- 117
G+VG PNVGKST F+A + AN+PF TIE NVG+ A+ D L Q
Sbjct: 4 GVVGKPNVGKSTFFSAATLV-DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 118 -------AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
+P V+ VD+AGLV GA +G GLGNKFL +R +++ VV
Sbjct: 63 EYRNGLALIP--VKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDA--------- 111
Query: 171 NGKVDPK 177
GK DP+
Sbjct: 112 TGKTDPE 118
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 24/128 (18%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G+VG P+VGKSTL +VV + K + A++ F T+ PN+G V D R V +
Sbjct: 162 GLVGFPSVGKSTLL-SVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXA--------- 211
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
D+ GL++GA QG GLG++FL HI I+ V+ D + G+ DP D
Sbjct: 212 -------DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVI------DXSGLEGR-DPYDD 257
Query: 180 VDVINLEL 187
IN EL
Sbjct: 258 YLTINQEL 265
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 17/100 (17%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G+VG PN GKS+L A+ + A +PF T+ PN+G+V V + L+
Sbjct: 161 GLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSEEERFTLA--------- 210
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVV 159
DI G+++GAS+G+GLG +FL HI +L V+
Sbjct: 211 -------DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVL 243
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL-- 109
+I+ +++ IVG PNVGKSTLFNA++ +A + P T +P V + D R +V
Sbjct: 176 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVD 234
Query: 110 -SGLSKSQKAVPASVE 124
+GL + + P +VE
Sbjct: 235 TAGLRRKSRVEPRTVE 250
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP 94
IVG PNVGKSTLFN +V+ KA + T +P
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP 39
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 18/91 (19%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G VG P+VGKSTL + + +++AA + F T+ V VP G+ + + A
Sbjct: 76 GFVGFPSVGKSTLLSKLT-GTESEAAEYEFTTL------VTVP--------GVIRYKGA- 119
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIR 150
++ +D+ G++ GA G G G + ++ R
Sbjct: 120 --KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
++ + G PNVGK++LFNA+ K AN+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGV 46
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
++ + G PNVGK++LFNA+ K AN+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGV 46
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
++ + G PNVGK++LFNA+ K AN+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGV 46
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97
A ++G PN GK+TLFNA+ N + N+P T+E G
Sbjct: 3 HALLIGNPNCGKTTLFNALT-NANQRVGNWPGVTVEKKTG 41
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
IVG PNVGKS+LFN +++ A A+ P T + G+V
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVV 44
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97
I G PNVGKSTL A+ K + A++PF T NVG
Sbjct: 172 IAGHPNVGKSTLLKALT-TAKPEIASYPFTTRGINVG 207
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
++RA I+G+PNVGKSTL N + + A+ + P T
Sbjct: 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 155
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 26/146 (17%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT---IEPNVGIVAVPDPRLHVLSGLS 113
L+ IVG PNVGKS+L NA ++ +A + P T +E + + +P
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP----------- 273
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
V+ +D AG+ + + Q E +G + R+ + +V D G
Sbjct: 274 ---------VQVLDTAGIRETSDQVEKIG---VERSRQAANTADLVLLTIDAATGWTTGD 321
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRM 199
+ V L LV + +D +EK++
Sbjct: 322 QEIYEQVKHRPLILVMNKIDLVEKQL 347
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
+VG PNVGK+T+FNA+ + N+P T+E GI+
Sbjct: 6 VALVGNPNVGKTTIFNALT-GLRQHVGNWPGVTVEKKEGIM 45
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
++ LR IVG PNVGKSTL N ++ +A + P T
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT 278
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E GI A D
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLT-GARQRVGNWAGVTVERKEGIFATTD 49
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
IVG PNVGKSTL N ++ A + P T + GI L++ ++
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI-------------LTEGRR-- 55
Query: 120 PASVEFVDIAGLVKGA-SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS 178
+ FVD GL K + GE + + + +V++++ VV D+ H P +
Sbjct: 56 --QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVV------DLRH------PPT 101
Query: 179 DVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
D ELV L + ++ L G D+ +K E+A KA E + +A +P
Sbjct: 102 PED----ELVARALKPLVGKVPILLVGNKLDA-AKYPEEAMKAYHELLPEA----EPRML 152
Query: 239 VTLNDFERDSIKQ--LCLLTMKPIIYVANVAESD 270
L++ + +K L L+ P Y + A+SD
Sbjct: 153 SALDERQVAELKADLLALMPEGPFFYPEDYAKSD 186
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 47
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 43
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 43
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 4 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 44
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P T+E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPAEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P T+E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 152 VDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202
+D Q+ RCF D D+ + D + D ++LE+ F +++ + + E+L
Sbjct: 212 LDRYFQIARCFRDEDL-----RADRQPDFTQLDLEMSFVEVEDVLELNERL 257
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
++G PN GK++LFN + + + + N+P T+E G+V
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLV 45
>pdb|2XMI|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Complexed With Citrate
pdb|2Y1P|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Complexed With Citrate
pdb|2Y3X|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2Y3X|B Chain B, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2Y3X|E Chain E, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2YDB|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With 2',3'-Cyclic Nadp
pdb|2YDD|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With 2',3'-Cyclic Amp
pdb|2YDC|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With Gtp
Length = 221
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGN 143
P R HV G + + V ++ +DI VKG SQGE +G
Sbjct: 147 PGSRAHVTLGCAADVQPVQTGLDLLDILQQVKGGSQGEAVGE 188
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P ++E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVSVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E G + D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTD 49
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E G + D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTD 49
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E G + D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTD 49
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P +E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVAVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 61 IVGLPNVGKSTLFNAV 76
IVG PNVGKST+FN +
Sbjct: 8 IVGRPNVGKSTIFNRI 23
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 61 IVGLPNVGKSTLFNAV 76
IVG PNVGKST+FN +
Sbjct: 28 IVGRPNVGKSTIFNRI 43
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G P GK++LFN + + + + N+P T+E SGL K K
Sbjct: 7 ALIGNPASGKTSLFNLITGHNQ-RVGNWPGVTVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
I G PN GKSTL N ++ +A ++ P T
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTT 268
>pdb|2ILX|A Chain A, Solution Structure Of Catalytic Domain Of Rat
2',3'-Cyclic- Nucleotide 3'-Phosphodiesterase (Cnp)
Protein
Length = 219
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGN 143
P R HV G + + V ++ ++I VKG SQGE +G
Sbjct: 145 PGSRAHVTLGCAADVQPVQTGLDLLEILQQVKGGSQGEEVGE 186
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 153 DSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202
D Q+V+CF D D+ + D + + I++E F Q+ + ME L
Sbjct: 207 DRYYQIVKCFRDEDL-----RADRQPEFTQIDVETSFMTAPQVREVMEAL 251
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 153 DSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202
D Q+V+CF D D+ + D + + I++E F Q+ + ME L
Sbjct: 207 DRYYQIVKCFRDEDL-----RADRQPEFTQIDVETSFMTAPQVREVMEAL 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,641,353
Number of Sequences: 62578
Number of extensions: 510621
Number of successful extensions: 1606
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1554
Number of HSP's gapped (non-prelim): 61
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)