Query 012870
Match_columns 454
No_of_seqs 436 out of 3497
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 GTP-binding protein Y 100.0 6.7E-89 1.5E-93 689.3 33.1 361 56-422 2-364 (364)
2 PTZ00258 GTP-binding protein; 100.0 7.2E-87 1.6E-91 681.5 32.8 365 54-422 19-388 (390)
3 TIGR00092 GTP-binding protein 100.0 1.9E-86 4.2E-91 671.5 30.3 360 55-421 1-367 (368)
4 COG0012 Predicted GTPase, prob 100.0 4.2E-86 9.1E-91 659.6 24.8 365 55-422 1-372 (372)
5 KOG1491 Predicted GTP-binding 100.0 2.4E-81 5.1E-86 612.0 25.1 366 53-421 17-390 (391)
6 PRK09602 translation-associate 100.0 2E-57 4.3E-62 468.7 27.7 337 56-419 1-393 (396)
7 cd01900 YchF YchF subfamily. 100.0 2.2E-54 4.8E-59 425.1 20.7 274 59-338 1-274 (274)
8 COG1163 DRG Predicted GTPase [ 100.0 1.3E-38 2.9E-43 310.8 16.5 268 54-386 61-340 (365)
9 PF06071 YchF-GTPase_C: Protei 100.0 4.6E-37 1E-41 245.4 7.1 82 340-421 1-84 (84)
10 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 6.9E-37 1.5E-41 242.8 7.0 81 340-420 1-83 (83)
11 cd01899 Ygr210 Ygr210 subfamil 100.0 1E-35 2.2E-40 299.1 16.5 241 59-308 1-259 (318)
12 KOG1486 GTP-binding protein DR 100.0 5.5E-31 1.2E-35 248.8 13.9 269 54-386 60-339 (364)
13 COG2262 HflX GTPases [General 100.0 2.8E-29 6E-34 253.2 11.1 192 2-233 119-358 (411)
14 COG1159 Era GTPase [General fu 99.9 6.6E-28 1.4E-32 235.0 12.1 188 57-273 7-221 (298)
15 PRK11058 GTPase HflX; Provisio 99.9 2E-25 4.3E-30 233.0 12.5 192 2-232 124-363 (426)
16 COG0536 Obg Predicted GTPase [ 99.9 1.6E-24 3.5E-29 213.8 12.6 107 57-187 160-266 (369)
17 KOG1489 Predicted GTP-binding 99.9 9.7E-25 2.1E-29 213.0 8.0 164 55-308 195-358 (366)
18 PRK12296 obgE GTPase CgtA; Rev 99.9 3E-23 6.4E-28 218.7 16.1 174 55-308 158-331 (500)
19 KOG1487 GTP-binding protein DR 99.9 7.4E-24 1.6E-28 201.4 9.3 263 57-386 60-333 (358)
20 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-23 2.4E-28 215.1 11.0 188 2-229 116-350 (351)
21 PRK12297 obgE GTPase CgtA; Rev 99.9 7.3E-23 1.6E-27 213.0 16.7 91 56-163 158-248 (424)
22 TIGR00436 era GTP-binding prot 99.9 4E-23 8.6E-28 203.9 13.6 186 58-273 2-213 (270)
23 cd01896 DRG The developmentall 99.9 1.1E-22 2.3E-27 196.8 14.2 225 58-346 2-233 (233)
24 PRK12298 obgE GTPase CgtA; Rev 99.9 9.4E-23 2E-27 210.7 14.1 158 57-244 160-347 (390)
25 PRK12299 obgE GTPase CgtA; Rev 99.9 1.6E-22 3.4E-27 205.3 14.9 91 56-163 158-248 (335)
26 TIGR02729 Obg_CgtA Obg family 99.9 1.1E-21 2.4E-26 198.8 14.8 91 56-163 157-247 (329)
27 PRK15494 era GTPase Era; Provi 99.9 1.6E-21 3.6E-26 198.5 13.6 191 55-273 51-265 (339)
28 PRK00089 era GTPase Era; Revie 99.8 2E-20 4.4E-25 186.3 13.3 187 57-272 6-219 (292)
29 PF02421 FeoB_N: Ferrous iron 99.8 5.7E-21 1.2E-25 173.2 7.6 87 57-162 1-89 (156)
30 COG1160 Predicted GTPases [Gen 99.8 2.9E-20 6.2E-25 190.6 10.3 143 57-231 4-165 (444)
31 KOG1423 Ras-like GTPase ERA [C 99.8 7.3E-20 1.6E-24 178.1 11.2 202 54-272 70-319 (379)
32 COG0486 ThdF Predicted GTPase 99.8 8.2E-20 1.8E-24 187.8 9.4 157 45-233 206-378 (454)
33 COG1160 Predicted GTPases [Gen 99.8 1.7E-18 3.8E-23 177.6 11.1 153 55-232 177-352 (444)
34 KOG0410 Predicted GTP binding 99.7 2.7E-18 5.9E-23 168.3 7.0 198 2-231 106-341 (410)
35 cd01898 Obg Obg subfamily. Th 99.7 1.9E-17 4.2E-22 150.1 11.0 143 58-230 2-170 (170)
36 cd01881 Obg_like The Obg-like 99.7 5.7E-17 1.2E-21 147.4 12.6 87 61-164 1-87 (176)
37 COG0370 FeoB Fe2+ transport sy 99.7 3.7E-17 7.9E-22 174.6 10.7 165 56-250 3-183 (653)
38 PRK05291 trmE tRNA modificatio 99.7 3.7E-17 8.1E-22 172.4 7.9 148 50-232 209-371 (449)
39 PF01926 MMR_HSR1: 50S ribosom 99.6 2E-16 4.3E-21 135.8 7.0 88 58-162 1-90 (116)
40 KOG1191 Mitochondrial GTPase [ 99.6 3.5E-16 7.7E-21 160.9 6.8 95 50-161 262-358 (531)
41 COG1084 Predicted GTPase [Gene 99.6 2.3E-15 4.9E-20 148.8 11.0 91 55-163 167-259 (346)
42 TIGR00450 mnmE_trmE_thdF tRNA 99.6 5.5E-15 1.2E-19 155.5 14.0 96 51-163 198-294 (442)
43 cd01897 NOG NOG1 is a nucleola 99.6 1.8E-14 3.8E-19 130.5 15.3 89 57-163 1-91 (168)
44 PRK03003 GTP-binding protein D 99.6 4.7E-15 1E-19 157.6 10.8 147 55-232 37-200 (472)
45 PRK03003 GTP-binding protein D 99.6 1.9E-14 4.1E-19 153.0 14.9 150 55-233 210-384 (472)
46 TIGR03594 GTPase_EngA ribosome 99.6 4.3E-15 9.3E-20 155.6 9.6 144 58-232 1-161 (429)
47 cd01878 HflX HflX subfamily. 99.6 9.6E-15 2.1E-19 137.4 10.7 142 54-230 39-204 (204)
48 TIGR03594 GTPase_EngA ribosome 99.6 1.8E-14 3.9E-19 150.9 13.1 152 55-232 171-345 (429)
49 cd04938 TGS_Obg-like TGS_Obg-l 99.6 5.7E-15 1.2E-19 118.1 6.6 62 340-419 1-75 (76)
50 PRK00093 GTP-binding protein D 99.5 3.3E-14 7.2E-19 149.3 13.0 154 55-232 172-345 (435)
51 cd01868 Rab11_like Rab11-like. 99.5 3.7E-14 8.1E-19 128.1 11.3 83 57-162 4-86 (165)
52 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.9E-14 4.1E-19 127.7 8.9 140 57-230 2-156 (157)
53 PRK09518 bifunctional cytidyla 99.5 1.7E-14 3.6E-19 160.4 10.3 148 55-233 274-438 (712)
54 cd01861 Rab6 Rab6 subfamily. 99.5 1.1E-13 2.3E-18 124.3 13.6 83 57-162 1-83 (161)
55 PRK09554 feoB ferrous iron tra 99.5 4E-14 8.8E-19 157.6 13.0 147 56-232 3-169 (772)
56 cd04171 SelB SelB subfamily. 99.5 4.9E-14 1.1E-18 126.4 11.1 143 57-228 1-163 (164)
57 cd01895 EngA2 EngA2 subfamily. 99.5 8.9E-14 1.9E-18 125.2 12.5 146 56-229 2-173 (174)
58 cd04142 RRP22 RRP22 subfamily. 99.5 1.4E-13 2.9E-18 130.0 14.2 91 57-163 1-92 (198)
59 PRK09518 bifunctional cytidyla 99.5 4.6E-14 1E-18 156.9 12.8 151 55-232 449-622 (712)
60 PRK00093 GTP-binding protein D 99.5 3.1E-14 6.7E-19 149.6 10.6 143 57-230 2-161 (435)
61 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.3E-13 2.9E-18 124.8 12.6 83 57-162 3-85 (166)
62 cd04163 Era Era subfamily. Er 99.5 6.5E-14 1.4E-18 124.7 10.2 146 56-230 3-168 (168)
63 cd01894 EngA1 EngA1 subfamily. 99.5 3.8E-14 8.2E-19 126.0 8.5 139 60-229 1-156 (157)
64 cd04109 Rab28 Rab28 subfamily. 99.5 1E-13 2.2E-18 132.1 11.7 85 57-163 1-85 (215)
65 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.8E-13 4E-18 128.5 12.9 162 57-238 1-192 (196)
66 cd01879 FeoB Ferrous iron tran 99.5 6.6E-14 1.4E-18 124.9 9.1 139 61-231 1-157 (158)
67 cd01867 Rab8_Rab10_Rab13_like 99.5 2.8E-13 6E-18 123.2 12.4 84 56-162 3-86 (167)
68 cd04136 Rap_like Rap-like subf 99.5 3.2E-13 7E-18 121.3 12.2 82 57-162 2-83 (163)
69 cd01866 Rab2 Rab2 subfamily. 99.5 5.4E-13 1.2E-17 121.5 13.6 84 56-162 4-87 (168)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.5 3.8E-13 8.2E-18 120.9 12.3 83 56-162 2-84 (164)
71 cd04175 Rap1 Rap1 subgroup. T 99.5 9.3E-13 2E-17 119.0 14.8 82 57-162 2-83 (164)
72 TIGR03598 GTPase_YsxC ribosome 99.5 9.5E-14 2.1E-18 128.3 8.1 90 54-163 16-112 (179)
73 cd04119 RJL RJL (RabJ-Like) su 99.5 8.3E-13 1.8E-17 118.7 13.9 84 57-163 1-84 (168)
74 COG0218 Predicted GTPase [Gene 99.5 2.1E-13 4.6E-18 127.1 10.0 148 55-231 23-197 (200)
75 cd04122 Rab14 Rab14 subfamily. 99.5 8.8E-13 1.9E-17 119.7 13.9 149 57-305 3-152 (166)
76 cd04138 H_N_K_Ras_like H-Ras/N 99.5 4.5E-13 9.7E-18 119.7 11.7 82 57-162 2-83 (162)
77 PRK00454 engB GTP-binding prot 99.5 3.5E-13 7.5E-18 125.4 11.0 148 55-232 23-195 (196)
78 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.5E-12 3.2E-17 122.6 15.3 155 57-306 1-157 (201)
79 cd01863 Rab18 Rab18 subfamily. 99.5 1.8E-12 3.9E-17 116.5 15.1 83 57-162 1-83 (161)
80 cd01865 Rab3 Rab3 subfamily. 99.5 6E-13 1.3E-17 120.8 12.0 83 57-162 2-84 (165)
81 cd04112 Rab26 Rab26 subfamily. 99.4 4.8E-13 1E-17 124.8 11.3 83 57-162 1-84 (191)
82 PRK04213 GTP-binding protein; 99.4 7.8E-13 1.7E-17 124.0 11.6 87 55-163 8-102 (201)
83 cd01862 Rab7 Rab7 subfamily. 99.4 3E-12 6.4E-17 116.0 14.9 83 57-162 1-83 (172)
84 smart00175 RAB Rab subfamily o 99.4 1.9E-12 4.2E-17 116.2 13.4 83 57-162 1-83 (164)
85 cd04127 Rab27A Rab27a subfamil 99.4 1.2E-12 2.6E-17 120.1 12.2 94 56-162 4-97 (180)
86 cd04176 Rap2 Rap2 subgroup. T 99.4 4.2E-12 9.1E-17 114.4 15.4 83 57-163 2-84 (163)
87 cd04106 Rab23_lke Rab23-like s 99.4 8E-13 1.7E-17 118.7 10.4 83 57-162 1-85 (162)
88 cd04144 Ras2 Ras2 subfamily. 99.4 3.1E-12 6.7E-17 119.3 14.2 82 58-163 1-82 (190)
89 cd04111 Rab39 Rab39 subfamily. 99.4 2.3E-12 5E-17 122.7 13.5 85 56-162 2-86 (211)
90 TIGR00437 feoB ferrous iron tr 99.4 4.4E-13 9.5E-18 145.9 9.2 81 63-162 1-83 (591)
91 cd04113 Rab4 Rab4 subfamily. 99.4 1.5E-12 3.2E-17 117.2 10.7 84 57-163 1-84 (161)
92 cd04158 ARD1 ARD1 subfamily. 99.4 1.4E-12 3.1E-17 119.1 10.4 140 58-236 1-166 (169)
93 cd04116 Rab9 Rab9 subfamily. 99.4 2.5E-12 5.4E-17 116.9 11.8 86 55-163 4-89 (170)
94 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.6E-12 3.4E-17 123.5 10.7 82 58-163 1-112 (208)
95 cd00880 Era_like Era (E. coli 99.4 1.9E-12 4.1E-17 113.5 10.0 146 61-229 1-162 (163)
96 cd04123 Rab21 Rab21 subfamily. 99.4 8.3E-12 1.8E-16 111.4 14.1 84 57-163 1-84 (162)
97 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1.3E-12 2.9E-17 117.8 9.0 144 57-230 1-165 (168)
98 PRK15467 ethanolamine utilizat 99.4 1.3E-12 2.8E-17 118.8 8.8 132 58-232 3-148 (158)
99 cd04125 RabA_like RabA-like su 99.4 5.7E-12 1.2E-16 117.0 13.2 83 57-162 1-83 (188)
100 cd04120 Rab12 Rab12 subfamily. 99.4 6.4E-12 1.4E-16 119.1 13.7 84 57-163 1-84 (202)
101 smart00173 RAS Ras subfamily o 99.4 2E-12 4.3E-17 116.6 9.6 141 57-231 1-162 (164)
102 cd00881 GTP_translation_factor 99.4 1.1E-12 2.4E-17 120.3 8.1 142 58-231 1-187 (189)
103 cd01889 SelB_euk SelB subfamil 99.4 1.9E-12 4.1E-17 121.0 9.7 159 57-231 1-186 (192)
104 PLN03118 Rab family protein; P 99.4 1.2E-11 2.6E-16 117.3 15.3 85 55-163 13-97 (211)
105 cd04139 RalA_RalB RalA/RalB su 99.4 1.3E-11 2.9E-16 110.5 14.5 82 57-162 1-82 (164)
106 PLN03108 Rab family protein; P 99.4 1.1E-11 2.4E-16 117.8 14.5 152 56-306 6-157 (210)
107 cd04140 ARHI_like ARHI subfami 99.4 6.6E-12 1.4E-16 113.9 12.4 83 57-163 2-84 (165)
108 COG3596 Predicted GTPase [Gene 99.4 1.2E-12 2.7E-17 126.8 7.9 164 54-234 37-225 (296)
109 cd04160 Arfrp1 Arfrp1 subfamil 99.4 2.2E-12 4.7E-17 116.6 9.0 136 58-227 1-165 (167)
110 cd01864 Rab19 Rab19 subfamily. 99.4 2.5E-12 5.3E-17 116.5 9.4 143 56-230 3-165 (165)
111 cd04117 Rab15 Rab15 subfamily. 99.4 5.8E-12 1.3E-16 114.1 11.6 84 57-163 1-84 (161)
112 cd00154 Rab Rab family. Rab G 99.3 6.8E-12 1.5E-16 110.8 11.3 83 57-162 1-83 (159)
113 PLN03110 Rab GTPase; Provision 99.3 1.2E-11 2.7E-16 118.0 13.6 85 55-162 11-95 (216)
114 cd04121 Rab40 Rab40 subfamily. 99.3 1E-11 2.3E-16 116.4 12.7 152 55-306 5-156 (189)
115 KOG0092 GTPase Rab5/YPT51 and 99.3 7.9E-12 1.7E-16 115.1 11.5 153 56-307 5-157 (200)
116 cd01860 Rab5_related Rab5-rela 99.3 3.7E-12 8E-17 114.5 9.0 141 57-230 2-162 (163)
117 cd01891 TypA_BipA TypA (tyrosi 99.3 1.4E-11 3.1E-16 115.2 13.3 83 57-163 3-100 (194)
118 cd04146 RERG_RasL11_like RERG/ 99.3 2.6E-11 5.6E-16 109.8 14.4 83 58-163 1-83 (165)
119 PTZ00369 Ras-like protein; Pro 99.3 1.1E-11 2.4E-16 115.5 12.1 84 56-163 5-88 (189)
120 cd04124 RabL2 RabL2 subfamily. 99.3 8.9E-12 1.9E-16 112.8 10.9 139 57-232 1-159 (161)
121 cd04148 RGK RGK subfamily. Th 99.3 2.3E-11 5.1E-16 116.6 14.4 82 57-163 1-84 (221)
122 cd01890 LepA LepA subfamily. 99.3 6.6E-12 1.4E-16 114.9 10.0 144 58-231 2-177 (179)
123 cd00877 Ran Ran (Ras-related n 99.3 2.3E-11 5E-16 111.0 13.5 83 57-162 1-83 (166)
124 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.1E-11 2.3E-16 113.2 11.2 84 57-162 3-86 (170)
125 TIGR02528 EutP ethanolamine ut 99.3 4.6E-12 9.9E-17 111.8 8.1 74 58-164 2-75 (142)
126 cd04154 Arl2 Arl2 subfamily. 99.3 7.7E-12 1.7E-16 114.5 9.8 136 54-227 12-171 (173)
127 cd04114 Rab30 Rab30 subfamily. 99.3 5.9E-12 1.3E-16 114.0 8.9 142 56-230 7-168 (169)
128 smart00178 SAR Sar1p-like memb 99.3 4.6E-12 1E-16 117.7 8.1 143 55-228 16-182 (184)
129 cd04101 RabL4 RabL4 (Rab-like4 99.3 8.2E-12 1.8E-16 112.5 9.5 141 57-230 1-163 (164)
130 cd04110 Rab35 Rab35 subfamily. 99.3 8.7E-12 1.9E-16 117.3 10.0 144 55-231 5-167 (199)
131 TIGR00231 small_GTP small GTP- 99.3 4.8E-12 1E-16 110.9 7.7 90 57-162 2-91 (161)
132 KOG0394 Ras-related GTPase [Ge 99.3 1.1E-11 2.5E-16 113.2 10.2 160 53-305 6-166 (210)
133 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 2.4E-11 5.3E-16 111.6 12.5 83 57-163 3-85 (172)
134 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.7E-11 3.6E-16 113.8 11.0 142 56-231 3-170 (183)
135 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 1.4E-11 3E-16 113.6 10.0 144 57-233 23-187 (221)
136 cd04135 Tc10 TC10 subfamily. 99.3 2.5E-11 5.4E-16 110.5 11.8 148 57-229 1-172 (174)
137 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 1E-11 2.2E-16 114.0 9.1 142 58-232 2-166 (170)
138 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.4E-11 2.9E-16 113.3 9.9 134 56-227 15-172 (174)
139 cd00879 Sar1 Sar1 subfamily. 99.3 1.4E-11 3E-16 114.3 10.0 138 55-230 18-190 (190)
140 cd04137 RheB Rheb (Ras Homolog 99.3 6.8E-11 1.5E-15 108.5 14.0 82 57-162 2-83 (180)
141 cd01892 Miro2 Miro2 subfamily. 99.3 2.8E-11 6.1E-16 110.8 11.2 145 55-231 3-166 (169)
142 cd04151 Arl1 Arl1 subfamily. 99.3 1.7E-11 3.7E-16 110.3 9.4 133 58-228 1-157 (158)
143 cd04118 Rab24 Rab24 subfamily. 99.3 2.4E-11 5.2E-16 113.1 10.7 146 57-231 1-166 (193)
144 cd04149 Arf6 Arf6 subfamily. 99.3 9.5E-12 2.1E-16 113.9 7.7 135 55-227 8-166 (168)
145 cd04155 Arl3 Arl3 subfamily. 99.3 1.7E-11 3.6E-16 111.6 9.2 137 54-228 12-172 (173)
146 cd04178 Nucleostemin_like Nucl 99.3 6.6E-12 1.4E-16 116.1 6.5 59 53-131 114-172 (172)
147 cd04177 RSR1 RSR1 subgroup. R 99.3 2.9E-11 6.2E-16 110.0 10.6 141 57-230 2-163 (168)
148 cd00876 Ras Ras family. The R 99.3 1.3E-11 2.8E-16 110.0 8.1 138 58-229 1-159 (160)
149 cd00878 Arf_Arl Arf (ADP-ribos 99.3 2.4E-11 5.1E-16 109.0 9.8 133 58-228 1-157 (158)
150 smart00177 ARF ARF-like small 99.3 2.5E-11 5.3E-16 111.8 10.1 138 55-230 12-173 (175)
151 cd01874 Cdc42 Cdc42 subfamily. 99.3 3.7E-11 8E-16 110.8 11.2 147 57-228 2-172 (175)
152 cd04126 Rab20 Rab20 subfamily. 99.3 9E-11 2E-15 112.7 14.2 79 57-163 1-79 (220)
153 PRK12317 elongation factor 1-a 99.3 3.8E-11 8.2E-16 126.1 12.4 86 54-163 4-119 (425)
154 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 6.1E-11 1.3E-15 108.0 12.1 79 58-163 1-79 (164)
155 cd01870 RhoA_like RhoA-like su 99.2 6.4E-11 1.4E-15 108.0 12.2 148 57-229 2-173 (175)
156 cd04156 ARLTS1 ARLTS1 subfamil 99.2 2E-11 4.4E-16 109.5 8.6 134 58-228 1-159 (160)
157 smart00174 RHO Rho (Ras homolo 99.2 5.2E-11 1.1E-15 108.5 11.2 147 59-230 1-171 (174)
158 cd04143 Rhes_like Rhes_like su 99.2 2.1E-10 4.6E-15 112.0 16.1 83 57-163 1-83 (247)
159 cd01876 YihA_EngB The YihA (En 99.2 3E-11 6.4E-16 107.9 9.2 86 58-163 1-93 (170)
160 PLN03071 GTP-binding nuclear p 99.2 6.2E-11 1.3E-15 113.5 12.0 86 55-163 12-97 (219)
161 KOG0084 GTPase Rab1/YPT1, smal 99.2 1.3E-11 2.8E-16 114.1 6.9 152 55-305 8-160 (205)
162 cd04147 Ras_dva Ras-dva subfam 99.2 3.3E-11 7.2E-16 113.2 9.7 149 58-238 1-170 (198)
163 cd01893 Miro1 Miro1 subfamily. 99.2 5.4E-11 1.2E-15 108.1 10.8 140 58-230 2-163 (166)
164 cd04150 Arf1_5_like Arf1-Arf5- 99.2 3.5E-11 7.6E-16 109.0 9.5 133 57-227 1-157 (159)
165 cd00157 Rho Rho (Ras homology) 99.2 4.9E-11 1.1E-15 107.9 10.4 147 57-228 1-170 (171)
166 cd04128 Spg1 Spg1p. Spg1p (se 99.2 2.8E-11 6.1E-16 112.5 9.0 147 57-233 1-168 (182)
167 cd04130 Wrch_1 Wrch-1 subfamil 99.2 7.5E-11 1.6E-15 107.9 11.6 146 57-226 1-169 (173)
168 cd01871 Rac1_like Rac1-like su 99.2 6E-11 1.3E-15 109.3 10.8 148 57-229 2-173 (174)
169 cd04157 Arl6 Arl6 subfamily. 99.2 1.9E-11 4.1E-16 109.6 7.3 80 58-163 1-80 (162)
170 PTZ00133 ADP-ribosylation fact 99.2 3.5E-11 7.5E-16 111.8 9.1 139 55-231 16-178 (182)
171 KOG0078 GTP-binding protein SE 99.2 1.3E-10 2.7E-15 108.8 12.5 154 54-306 10-163 (207)
172 PLN00223 ADP-ribosylation fact 99.2 7.1E-11 1.5E-15 109.7 10.4 138 55-231 16-178 (181)
173 cd04159 Arl10_like Arl10-like 99.2 8.5E-11 1.8E-15 103.9 10.4 134 58-228 1-158 (159)
174 cd04132 Rho4_like Rho4-like su 99.2 5.4E-11 1.2E-15 110.0 9.3 148 57-232 1-168 (187)
175 PF00009 GTP_EFTU: Elongation 99.2 4E-11 8.6E-16 111.8 8.1 147 56-231 3-187 (188)
176 PRK09866 hypothetical protein; 99.2 1.1E-10 2.4E-15 125.1 12.3 40 55-95 68-107 (741)
177 KOG1490 GTP-binding protein CR 99.2 6.1E-12 1.3E-16 129.8 2.6 102 55-176 167-293 (620)
178 TIGR02836 spore_IV_A stage IV 99.2 3.7E-10 7.9E-15 115.8 15.2 74 53-138 14-108 (492)
179 cd01884 EF_Tu EF-Tu subfamily. 99.2 9.6E-11 2.1E-15 110.5 9.9 97 57-177 3-131 (195)
180 cd04134 Rho3 Rho3 subfamily. 99.2 2.1E-10 4.5E-15 106.9 12.1 151 57-232 1-175 (189)
181 PF00071 Ras: Ras family; Int 99.2 2.5E-10 5.4E-15 102.6 12.1 149 58-305 1-149 (162)
182 cd01858 NGP_1 NGP-1. Autoanti 99.2 2.8E-11 6.1E-16 109.6 5.8 57 55-131 101-157 (157)
183 KOG0087 GTPase Rab11/YPT3, sma 99.2 2.5E-10 5.5E-15 106.6 11.7 153 54-305 12-164 (222)
184 cd04131 Rnd Rnd subfamily. Th 99.2 2.5E-10 5.4E-15 105.8 11.1 143 57-228 2-173 (178)
185 cd04161 Arl2l1_Arl13_like Arl2 99.1 4E-11 8.7E-16 109.5 5.5 78 58-163 1-78 (167)
186 KOG0073 GTP-binding ADP-ribosy 99.1 3.7E-10 8E-15 101.5 11.4 87 48-162 8-94 (185)
187 cd01875 RhoG RhoG subfamily. 99.1 2.4E-10 5.3E-15 106.8 10.7 150 57-231 4-177 (191)
188 KOG0098 GTPase Rab2, small G p 99.1 2.2E-10 4.7E-15 105.0 9.8 153 55-306 5-157 (216)
189 TIGR00475 selB selenocysteine- 99.1 1.8E-10 3.8E-15 125.4 10.9 146 57-232 1-167 (581)
190 cd01886 EF-G Elongation factor 99.1 8.7E-10 1.9E-14 109.1 14.5 82 58-163 1-99 (270)
191 COG1161 Predicted GTPases [Gen 99.1 6.7E-11 1.4E-15 119.9 6.4 63 54-136 130-192 (322)
192 TIGR00487 IF-2 translation ini 99.1 2.3E-10 5E-15 124.3 10.9 146 54-228 85-247 (587)
193 cd04133 Rop_like Rop subfamily 99.1 6.5E-10 1.4E-14 103.1 12.3 148 57-230 2-172 (176)
194 cd01853 Toc34_like Toc34-like 99.1 7.7E-11 1.7E-15 115.3 6.4 93 52-161 27-124 (249)
195 cd04104 p47_IIGP_like p47 (47- 99.1 4.5E-10 9.8E-15 105.7 10.5 157 56-233 1-186 (197)
196 PRK09563 rbgA GTPase YlqF; Rev 99.1 1.1E-10 2.4E-15 116.5 6.5 62 54-135 119-180 (287)
197 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 5.7E-10 1.2E-14 107.3 11.0 148 57-228 2-173 (222)
198 cd01849 YlqF_related_GTPase Yl 99.1 1.7E-10 3.7E-15 104.4 6.4 58 54-131 98-155 (155)
199 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 5.1E-10 1.1E-14 108.4 9.9 148 55-231 12-188 (232)
200 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 6.9E-10 1.5E-14 103.4 10.4 149 55-228 4-177 (182)
201 CHL00189 infB translation init 99.1 3.4E-10 7.4E-15 125.2 9.7 152 53-230 241-409 (742)
202 PF00025 Arf: ADP-ribosylation 99.1 5.6E-10 1.2E-14 103.1 9.7 137 54-228 12-173 (175)
203 cd01888 eIF2_gamma eIF2-gamma 99.1 7.5E-10 1.6E-14 104.7 10.6 100 121-233 83-201 (203)
204 PRK05306 infB translation init 99.1 4E-10 8.7E-15 125.6 10.0 146 53-228 287-449 (787)
205 PRK10512 selenocysteinyl-tRNA- 99.1 5.9E-10 1.3E-14 121.9 10.7 146 58-232 2-167 (614)
206 TIGR00991 3a0901s02IAP34 GTP-b 99.1 2.4E-10 5.1E-15 114.3 7.0 90 54-161 36-128 (313)
207 TIGR03596 GTPase_YlqF ribosome 99.0 2.5E-10 5.5E-15 113.2 6.6 61 55-135 117-177 (276)
208 cd01873 RhoBTB RhoBTB subfamil 99.0 2.4E-09 5.1E-14 100.9 12.8 47 257-305 120-184 (195)
209 CHL00071 tufA elongation facto 99.0 9E-10 2E-14 115.2 10.8 101 54-178 10-142 (409)
210 TIGR00491 aIF-2 translation in 99.0 1.3E-09 2.8E-14 118.5 10.8 112 56-178 4-135 (590)
211 TIGR00483 EF-1_alpha translati 99.0 1.8E-09 4E-14 113.4 11.6 87 54-164 5-121 (426)
212 KOG0095 GTPase Rab30, small G 99.0 2.5E-09 5.4E-14 94.7 10.5 144 55-231 6-169 (213)
213 KOG0080 GTPase Rab18, small G 99.0 1.2E-09 2.6E-14 97.9 8.2 86 55-163 10-95 (209)
214 cd01855 YqeH YqeH. YqeH is an 99.0 3.3E-10 7.2E-15 105.7 4.9 56 56-131 127-190 (190)
215 cd01883 EF1_alpha Eukaryotic e 99.0 1.3E-09 2.9E-14 104.3 8.8 82 58-163 1-112 (219)
216 PRK12735 elongation factor Tu; 99.0 1.8E-09 4E-14 112.4 10.3 86 54-163 10-110 (396)
217 cd04103 Centaurin_gamma Centau 99.0 2.8E-09 6E-14 96.8 10.1 135 57-229 1-157 (158)
218 PLN03127 Elongation factor Tu; 99.0 4E-09 8.7E-14 111.4 12.7 103 52-178 57-191 (447)
219 PRK05506 bifunctional sulfate 99.0 1.9E-09 4.1E-14 118.8 10.7 102 54-162 22-138 (632)
220 PF10662 PduV-EutP: Ethanolami 99.0 1.9E-09 4.1E-14 96.3 8.4 126 57-227 2-142 (143)
221 cd00882 Ras_like_GTPase Ras-li 99.0 1.6E-09 3.4E-14 93.4 7.8 81 61-164 1-81 (157)
222 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 7.8E-10 1.7E-14 98.5 5.9 56 58-133 85-140 (141)
223 PF04548 AIG1: AIG1 family; I 99.0 3.2E-09 6.9E-14 101.3 10.3 90 57-163 1-95 (212)
224 smart00176 RAN Ran (Ras-relate 99.0 5.9E-09 1.3E-13 98.7 12.0 79 62-163 1-79 (200)
225 PRK05124 cysN sulfate adenylyl 99.0 4.5E-09 9.7E-14 111.9 12.1 87 53-163 24-142 (474)
226 cd04129 Rho2 Rho2 subfamily. 99.0 6.1E-09 1.3E-13 96.8 11.5 150 57-231 2-173 (187)
227 PF00350 Dynamin_N: Dynamin fa 99.0 1.1E-09 2.4E-14 99.5 6.3 101 59-163 1-140 (168)
228 PRK12736 elongation factor Tu; 98.9 3.1E-09 6.7E-14 110.7 10.4 150 53-231 9-201 (394)
229 PTZ00132 GTP-binding nuclear p 98.9 9.1E-09 2E-13 97.8 12.7 145 55-236 8-173 (215)
230 cd04168 TetM_like Tet(M)-like 98.9 2.3E-08 5.1E-13 97.1 15.2 82 58-163 1-99 (237)
231 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.9E-09 4.2E-14 86.2 6.1 50 351-417 22-73 (76)
232 KOG1424 Predicted GTP-binding 98.9 7.9E-10 1.7E-14 114.9 4.6 61 56-136 314-374 (562)
233 TIGR01393 lepA GTP-binding pro 98.9 3.7E-09 8E-14 115.4 9.8 144 57-232 4-181 (595)
234 PRK00007 elongation factor G; 98.9 1.8E-08 3.8E-13 112.2 14.3 84 56-163 10-110 (693)
235 cd01856 YlqF YlqF. Proteins o 98.9 2.5E-09 5.3E-14 98.4 6.0 58 55-132 114-171 (171)
236 TIGR00484 EF-G translation elo 98.9 1.5E-08 3.3E-13 112.7 12.9 98 56-177 10-140 (689)
237 PRK00049 elongation factor Tu; 98.9 8.2E-09 1.8E-13 107.6 10.1 86 54-163 10-110 (396)
238 KOG0093 GTPase Rab3, small G p 98.8 3.7E-09 8E-14 93.5 5.6 154 55-307 20-173 (193)
239 TIGR00485 EF-Tu translation el 98.8 1.4E-08 2.9E-13 105.9 10.8 86 54-163 10-110 (394)
240 cd01666 TGS_DRG_C TGS_DRG_C: 98.8 3.3E-09 7.2E-14 84.5 4.5 45 340-384 1-49 (75)
241 TIGR02034 CysN sulfate adenyly 98.8 1.3E-08 2.8E-13 106.4 10.2 83 57-163 1-115 (406)
242 KOG0091 GTPase Rab39, small G 98.8 4E-09 8.6E-14 94.9 5.2 153 56-305 8-161 (213)
243 PLN03126 Elongation factor Tu; 98.8 2E-08 4.3E-13 106.9 11.3 103 52-178 77-211 (478)
244 PRK04004 translation initiatio 98.8 2.5E-08 5.4E-13 108.7 12.3 112 55-177 5-136 (586)
245 PF08477 Miro: Miro-like prote 98.8 5.5E-09 1.2E-13 89.2 5.5 83 58-164 1-86 (119)
246 TIGR00993 3a0901s04IAP86 chlor 98.8 7.6E-09 1.6E-13 111.5 7.8 92 54-162 116-212 (763)
247 PRK12739 elongation factor G; 98.8 2.1E-08 4.6E-13 111.6 11.6 98 56-177 8-138 (691)
248 KOG2423 Nucleolar GTPase [Gene 98.8 3.4E-09 7.3E-14 107.0 4.5 82 35-136 285-367 (572)
249 KOG2484 GTPase [General functi 98.8 3.7E-09 8E-14 107.1 4.6 74 44-137 240-313 (435)
250 PRK13796 GTPase YqeH; Provisio 98.8 3.9E-09 8.4E-14 108.9 4.7 59 56-134 160-223 (365)
251 TIGR03680 eif2g_arch translati 98.8 1.9E-08 4E-13 105.3 9.5 164 55-231 3-196 (406)
252 KOG0079 GTP-binding protein H- 98.8 8.9E-09 1.9E-13 91.2 5.7 86 56-164 8-93 (198)
253 TIGR03597 GTPase_YqeH ribosome 98.8 5.6E-09 1.2E-13 107.5 5.0 58 57-134 155-217 (360)
254 cd04170 EF-G_bact Elongation f 98.7 1.8E-08 3.8E-13 99.4 7.2 83 58-164 1-100 (268)
255 KOG0075 GTP-binding ADP-ribosy 98.7 1.4E-08 3.1E-13 89.8 5.3 84 55-165 19-102 (186)
256 PRK05433 GTP-binding protein L 98.7 6.1E-08 1.3E-12 106.0 11.2 146 56-232 7-185 (600)
257 cd04169 RF3 RF3 subfamily. Pe 98.7 2.6E-08 5.6E-13 98.5 7.2 96 57-163 3-106 (267)
258 PRK04000 translation initiatio 98.7 3.4E-08 7.4E-13 103.5 8.3 165 54-232 7-202 (411)
259 cd01859 MJ1464 MJ1464. This f 98.7 2.1E-08 4.7E-13 90.4 5.8 57 55-131 100-156 (156)
260 cd04167 Snu114p Snu114p subfam 98.7 4.9E-08 1.1E-12 92.9 8.4 87 58-163 2-106 (213)
261 PRK10218 GTP-binding protein; 98.7 8.4E-08 1.8E-12 104.8 11.0 145 56-232 5-196 (607)
262 cd01851 GBP Guanylate-binding 98.7 3.5E-08 7.7E-13 95.0 6.8 91 56-161 7-101 (224)
263 COG1100 GTPase SAR1 and relate 98.7 1.8E-07 3.8E-12 88.5 11.4 152 57-231 6-185 (219)
264 KOG0088 GTPase Rab21, small G 98.7 3E-08 6.5E-13 88.8 5.2 94 54-172 11-106 (218)
265 cd04105 SR_beta Signal recogni 98.6 4.1E-08 9E-13 93.0 6.5 83 57-163 1-84 (203)
266 TIGR01394 TypA_BipA GTP-bindin 98.6 1.3E-07 2.8E-12 103.2 10.8 143 58-232 3-192 (594)
267 cd01850 CDC_Septin CDC/Septin. 98.6 1.4E-07 3E-12 93.7 9.8 30 55-84 3-32 (276)
268 PF09439 SRPRB: Signal recogni 98.6 1.3E-07 2.9E-12 88.0 8.3 82 56-163 3-87 (181)
269 PRK12289 GTPase RsgA; Reviewed 98.6 4.2E-08 9.1E-13 100.5 5.0 58 58-135 174-238 (352)
270 PRK13768 GTPase; Provisional 98.6 9.5E-08 2.1E-12 93.7 7.1 111 121-234 97-250 (253)
271 cd04102 RabL3 RabL3 (Rab-like3 98.6 9E-08 2E-12 90.8 6.3 90 57-164 1-90 (202)
272 PRK13351 elongation factor G; 98.6 4.6E-07 1E-11 100.9 12.9 98 56-177 8-138 (687)
273 PRK00741 prfC peptide chain re 98.6 3.9E-07 8.4E-12 98.2 11.8 111 55-176 9-143 (526)
274 PRK12288 GTPase RsgA; Reviewed 98.6 4.7E-08 1E-12 100.1 4.4 57 58-134 207-270 (347)
275 KOG0070 GTP-binding ADP-ribosy 98.6 4E-07 8.6E-12 83.8 9.7 83 54-164 15-97 (181)
276 cd04165 GTPBP1_like GTPBP1-lik 98.5 3.6E-07 7.7E-12 88.1 9.7 21 58-78 1-21 (224)
277 PTZ00141 elongation factor 1- 98.5 3.3E-07 7.2E-12 97.0 10.2 86 54-163 5-120 (446)
278 COG2229 Predicted GTPase [Gene 98.5 9.4E-07 2E-11 81.4 11.2 87 55-164 9-104 (187)
279 KOG0097 GTPase Rab14, small G 98.5 9.5E-07 2.1E-11 77.8 10.5 151 55-305 10-161 (215)
280 KOG2485 Conserved ATP/GTP bind 98.5 1.6E-07 3.4E-12 93.0 6.1 75 46-137 133-212 (335)
281 cd01885 EF2 EF2 (for archaea a 98.5 2.9E-07 6.3E-12 88.6 7.8 93 58-164 2-109 (222)
282 KOG0086 GTPase Rab4, small G p 98.5 1.7E-07 3.8E-12 83.5 5.5 87 55-164 8-94 (214)
283 smart00053 DYNc Dynamin, GTPas 98.5 5.6E-07 1.2E-11 87.6 9.6 105 55-163 25-174 (240)
284 PLN00023 GTP-binding protein; 98.5 2.9E-07 6.3E-12 92.8 7.5 98 56-163 21-118 (334)
285 TIGR00157 ribosome small subun 98.5 1.5E-07 3.3E-12 91.8 4.7 57 57-134 121-184 (245)
286 KOG0395 Ras-related GTPase [Ge 98.4 1.3E-06 2.9E-11 82.5 10.8 151 56-305 3-153 (196)
287 KOG0462 Elongation factor-type 98.4 1.9E-06 4.2E-11 90.6 12.7 144 57-233 61-237 (650)
288 TIGR00503 prfC peptide chain r 98.4 6.1E-07 1.3E-11 96.8 9.4 111 55-176 10-144 (527)
289 PRK12740 elongation factor G; 98.4 1.2E-06 2.7E-11 97.2 10.9 92 62-177 1-125 (668)
290 PTZ00327 eukaryotic translatio 98.4 1.1E-06 2.3E-11 93.2 9.6 165 55-232 33-234 (460)
291 PF05049 IIGP: Interferon-indu 98.4 3.4E-07 7.4E-12 94.0 5.4 84 54-160 33-123 (376)
292 cd01882 BMS1 Bms1. Bms1 is an 98.4 5.3E-07 1.1E-11 86.9 5.9 79 54-163 37-115 (225)
293 PLN00043 elongation factor 1-a 98.3 1.7E-06 3.6E-11 91.7 9.6 49 258-308 146-204 (447)
294 PRK00098 GTPase RsgA; Reviewed 98.3 4.5E-07 9.8E-12 91.1 4.8 57 57-133 165-228 (298)
295 PF03193 DUF258: Protein of un 98.3 5E-07 1.1E-11 82.5 3.8 57 57-133 36-99 (161)
296 KOG1145 Mitochondrial translat 98.3 3E-06 6.6E-11 89.2 9.9 146 54-228 151-313 (683)
297 PRK09435 membrane ATPase/prote 98.3 9.7E-07 2.1E-11 89.8 5.8 96 120-231 148-260 (332)
298 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 1.9E-06 4.2E-11 83.4 7.0 87 58-162 1-87 (232)
299 KOG0076 GTP-binding ADP-ribosy 98.2 1.5E-06 3.2E-11 79.3 5.6 87 55-165 16-106 (197)
300 COG0481 LepA Membrane GTPase L 98.2 3.7E-06 8E-11 87.3 9.2 144 58-232 11-187 (603)
301 COG0532 InfB Translation initi 98.2 6.3E-06 1.4E-10 87.0 9.9 146 55-227 4-166 (509)
302 KOG0083 GTPase Rab26/Rab37, sm 98.2 9.5E-07 2.1E-11 77.2 3.0 79 61-162 2-81 (192)
303 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.8E-06 3.8E-11 86.3 4.5 57 57-133 162-225 (287)
304 TIGR00490 aEF-2 translation el 98.1 2.7E-06 5.9E-11 95.2 6.2 102 56-177 19-151 (720)
305 PF08438 MMR_HSR1_C: GTPase of 98.1 2.5E-06 5.4E-11 72.7 3.9 77 263-347 1-108 (109)
306 PTZ00416 elongation factor 2; 98.1 3.4E-06 7.3E-11 95.9 6.1 95 56-164 19-128 (836)
307 COG5257 GCD11 Translation init 98.1 1.9E-05 4.1E-10 78.7 10.2 165 55-232 9-203 (415)
308 COG5256 TEF1 Translation elong 98.1 4.4E-06 9.6E-11 85.7 5.8 85 55-164 6-121 (428)
309 KOG0074 GTP-binding ADP-ribosy 98.1 9.1E-06 2E-10 71.9 6.7 83 54-163 15-97 (185)
310 KOG0090 Signal recognition par 98.1 3.8E-06 8.2E-11 79.2 4.3 86 53-163 35-120 (238)
311 KOG4252 GTP-binding protein [S 98.1 3.4E-06 7.3E-11 77.3 3.8 142 56-230 20-180 (246)
312 PF03029 ATP_bind_1: Conserved 98.0 3.9E-06 8.5E-11 81.7 4.4 56 122-178 92-170 (238)
313 KOG0393 Ras-related small GTPa 98.0 1.9E-05 4.2E-10 74.2 8.3 86 56-164 4-89 (198)
314 PLN00116 translation elongatio 98.0 1.5E-05 3.2E-10 90.8 8.0 115 55-177 18-163 (843)
315 TIGR00073 hypB hydrogenase acc 97.9 3.6E-05 7.8E-10 73.0 8.8 31 48-78 14-44 (207)
316 COG4917 EutP Ethanolamine util 97.9 3E-05 6.5E-10 67.4 7.3 128 57-227 2-142 (148)
317 PRK07560 elongation factor EF- 97.9 1.7E-05 3.7E-10 89.0 7.2 101 56-176 20-151 (731)
318 KOG3883 Ras family small GTPas 97.9 0.00012 2.7E-09 65.6 10.7 91 51-161 4-94 (198)
319 KOG1532 GTPase XAB1, interacts 97.9 4.6E-05 1E-09 74.5 8.5 176 55-233 18-266 (366)
320 TIGR00750 lao LAO/AO transport 97.9 6.6E-05 1.4E-09 75.5 9.8 25 54-78 32-56 (300)
321 TIGR00101 ureG urease accessor 97.8 5.4E-05 1.2E-09 71.7 7.9 23 56-78 1-23 (199)
322 COG1162 Predicted GTPases [Gen 97.8 1.3E-05 2.8E-10 79.8 3.6 28 58-85 166-193 (301)
323 KOG0081 GTPase Rab27, small G 97.8 2.2E-05 4.7E-10 70.7 4.2 95 57-165 10-104 (219)
324 KOG0448 Mitofusin 1 GTPase, in 97.7 5.2E-05 1.1E-09 81.9 6.8 121 54-179 107-276 (749)
325 KOG0077 Vesicle coat complex C 97.7 4.7E-05 1E-09 69.2 4.6 82 55-164 19-100 (193)
326 KOG2655 Septin family protein 97.7 0.0006 1.3E-08 69.7 13.2 74 47-133 12-91 (366)
327 PTZ00099 rab6; Provisional 97.7 0.00012 2.6E-09 67.8 7.5 96 121-233 29-144 (176)
328 PF02824 TGS: TGS domain; Int 97.7 4.9E-05 1.1E-09 58.0 3.9 41 341-384 1-41 (60)
329 KOG1707 Predicted Ras related/ 97.7 0.00032 6.9E-09 74.8 11.1 170 55-256 8-204 (625)
330 KOG1547 Septin CDC10 and relat 97.6 0.0011 2.4E-08 63.9 13.2 67 54-134 44-117 (336)
331 KOG0071 GTP-binding ADP-ribosy 97.6 0.00058 1.3E-08 60.6 9.8 82 55-164 16-97 (180)
332 PF00735 Septin: Septin; Inte 97.5 9.1E-05 2E-09 73.9 5.0 26 56-81 4-29 (281)
333 PRK10463 hydrogenase nickel in 97.5 0.00023 4.9E-09 71.1 7.1 30 49-78 97-126 (290)
334 PRK01889 GTPase RsgA; Reviewed 97.5 5.8E-05 1.3E-09 77.7 3.0 32 56-87 195-226 (356)
335 PRK14845 translation initiatio 97.5 0.0004 8.8E-09 80.0 9.4 101 67-177 472-591 (1049)
336 KOG0458 Elongation factor 1 al 97.4 0.00035 7.5E-09 74.5 7.9 98 56-164 177-291 (603)
337 KOG0072 GTP-binding ADP-ribosy 97.4 0.00028 6.1E-09 62.8 6.0 142 55-232 17-180 (182)
338 KOG2486 Predicted GTPase [Gene 97.4 0.00034 7.3E-09 68.7 6.6 89 55-163 135-231 (320)
339 COG3276 SelB Selenocysteine-sp 97.4 0.0008 1.7E-08 69.9 9.4 141 58-231 2-162 (447)
340 PF03308 ArgK: ArgK protein; 97.4 0.00033 7.2E-09 68.5 6.1 24 54-77 27-50 (266)
341 KOG1954 Endocytosis/signaling 97.3 0.0011 2.3E-08 67.5 9.1 120 56-178 58-225 (532)
342 COG4108 PrfC Peptide chain rel 97.3 0.00054 1.2E-08 71.0 7.1 108 57-188 13-162 (528)
343 COG5019 CDC3 Septin family pro 97.3 0.00052 1.1E-08 69.8 6.7 69 53-134 20-95 (373)
344 cd03112 CobW_like The function 97.2 0.00024 5.3E-09 64.6 3.6 43 120-162 86-129 (158)
345 KOG0461 Selenocysteine-specifi 97.2 0.0025 5.4E-08 64.3 9.9 93 57-164 8-106 (522)
346 KOG1144 Translation initiation 97.0 0.0029 6.3E-08 69.2 9.6 112 55-177 474-605 (1064)
347 COG1703 ArgK Putative periplas 97.0 0.001 2.3E-08 66.1 5.6 24 54-77 49-72 (323)
348 COG0378 HypB Ni2+-binding GTPa 97.0 0.0022 4.9E-08 60.1 7.2 95 121-228 97-198 (202)
349 COG0480 FusA Translation elong 96.9 0.0023 4.9E-08 71.2 7.7 84 55-163 9-111 (697)
350 KOG0468 U5 snRNP-specific prot 96.9 0.0021 4.5E-08 69.6 7.0 101 57-176 129-261 (971)
351 TIGR01425 SRP54_euk signal rec 96.9 0.0018 4E-08 68.0 6.5 22 56-77 100-121 (429)
352 KOG3886 GTP-binding protein [S 96.8 0.00055 1.2E-08 65.6 1.9 87 55-164 3-94 (295)
353 COG1217 TypA Predicted membran 96.8 0.0053 1.2E-07 64.2 8.8 106 57-175 6-131 (603)
354 PF05783 DLIC: Dynein light in 96.5 0.12 2.5E-06 55.4 17.0 41 55-99 24-64 (472)
355 TIGR03263 guanyl_kin guanylate 96.5 0.0018 3.8E-08 59.5 2.5 41 58-98 3-43 (180)
356 COG5192 BMS1 GTP-binding prote 96.3 0.0033 7.1E-08 66.9 3.8 77 55-162 68-144 (1077)
357 COG0050 TufB GTPases - transla 96.3 0.039 8.4E-07 55.0 10.7 106 54-183 10-147 (394)
358 PRK14722 flhF flagellar biosyn 96.2 0.0027 5.8E-08 65.8 2.7 23 56-78 137-159 (374)
359 cd00071 GMPK Guanosine monopho 96.2 0.0031 6.7E-08 56.0 2.7 40 59-98 2-42 (137)
360 PF00448 SRP54: SRP54-type pro 96.2 0.0013 2.9E-08 62.1 0.2 21 57-77 2-22 (196)
361 COG2895 CysN GTPases - Sulfate 96.2 0.01 2.2E-07 60.3 6.4 24 55-78 5-28 (431)
362 KOG4423 GTP-binding protein-li 96.1 0.0013 2.9E-08 61.0 -0.4 89 54-164 23-111 (229)
363 KOG1673 Ras GTPases [General f 96.0 0.03 6.6E-07 50.7 7.9 86 56-164 20-105 (205)
364 PRK11889 flhF flagellar biosyn 96.0 0.0041 9E-08 64.7 2.8 23 56-78 241-263 (436)
365 PRK12726 flagellar biosynthesi 95.9 0.0023 4.9E-08 66.3 0.5 24 55-78 205-228 (407)
366 PRK14721 flhF flagellar biosyn 95.9 0.0094 2E-07 62.7 4.8 24 56-79 191-214 (420)
367 cd03114 ArgK-like The function 95.9 0.01 2.2E-07 53.5 4.4 20 59-78 2-21 (148)
368 PRK14737 gmk guanylate kinase; 95.9 0.0072 1.6E-07 56.6 3.6 44 56-99 4-47 (186)
369 COG1116 TauB ABC-type nitrate/ 95.8 0.007 1.5E-07 58.9 3.3 23 58-80 31-53 (248)
370 PF13207 AAA_17: AAA domain; P 95.7 0.0066 1.4E-07 51.8 2.4 21 58-78 1-21 (121)
371 PRK00300 gmk guanylate kinase; 95.7 0.0085 1.8E-07 56.2 3.4 44 55-98 4-47 (205)
372 PRK05703 flhF flagellar biosyn 95.7 0.0067 1.5E-07 64.0 2.8 22 57-78 222-243 (424)
373 PRK10416 signal recognition pa 95.6 0.0069 1.5E-07 61.5 2.6 23 56-78 114-136 (318)
374 COG3840 ThiQ ABC-type thiamine 95.6 0.0079 1.7E-07 56.1 2.6 35 57-103 26-60 (231)
375 PRK14974 cell division protein 95.6 0.011 2.4E-07 60.5 3.7 23 55-77 139-161 (336)
376 TIGR00064 ftsY signal recognit 95.5 0.01 2.2E-07 58.9 3.3 22 56-77 72-93 (272)
377 PF00005 ABC_tran: ABC transpo 95.5 0.0085 1.8E-07 52.3 2.4 25 55-79 10-34 (137)
378 COG1618 Predicted nucleotide k 95.5 0.016 3.5E-07 53.0 4.0 24 54-77 3-26 (179)
379 PRK14738 gmk guanylate kinase; 95.5 0.013 2.7E-07 55.7 3.5 43 55-97 12-54 (206)
380 PF03205 MobB: Molybdopterin g 95.3 0.01 2.2E-07 53.0 2.2 22 57-78 1-22 (140)
381 PRK07261 topology modulation p 95.3 0.011 2.4E-07 54.4 2.4 21 57-77 1-21 (171)
382 KOG1533 Predicted GTPase [Gene 95.2 0.013 2.8E-07 56.6 2.5 21 57-77 3-23 (290)
383 PRK12724 flagellar biosynthesi 95.1 0.007 1.5E-07 63.5 0.6 22 57-78 224-245 (432)
384 COG0194 Gmk Guanylate kinase [ 95.1 0.012 2.6E-07 54.9 1.9 44 55-99 3-46 (191)
385 TIGR00691 spoT_relA (p)ppGpp s 95.1 0.047 1E-06 61.1 6.9 43 339-384 360-402 (683)
386 cd01983 Fer4_NifH The Fer4_Nif 95.0 0.03 6.5E-07 44.8 3.9 67 59-161 2-68 (99)
387 COG1136 SalX ABC-type antimicr 95.0 0.017 3.6E-07 55.8 2.7 24 57-80 32-55 (226)
388 cd03115 SRP The signal recogni 95.0 0.018 3.8E-07 52.7 2.7 20 58-77 2-21 (173)
389 PRK06731 flhF flagellar biosyn 94.9 0.015 3.4E-07 57.6 2.3 24 55-78 74-97 (270)
390 TIGR03499 FlhF flagellar biosy 94.8 0.012 2.6E-07 58.7 1.2 23 56-78 194-216 (282)
391 cd02019 NK Nucleoside/nucleoti 94.7 0.019 4.2E-07 44.6 2.1 19 59-77 2-20 (69)
392 cd02042 ParA ParA and ParB of 94.7 0.036 7.8E-07 46.1 3.9 69 59-161 2-71 (104)
393 PF02263 GBP: Guanylate-bindin 94.7 0.046 1E-06 53.9 5.2 65 56-133 21-86 (260)
394 COG0563 Adk Adenylate kinase a 94.7 0.021 4.6E-07 53.1 2.5 21 57-77 1-21 (178)
395 KOG0447 Dynamin-like GTP bindi 94.6 0.13 2.9E-06 55.0 8.3 45 55-99 307-351 (980)
396 PF13521 AAA_28: AAA domain; P 94.5 0.017 3.6E-07 52.4 1.4 21 58-78 1-21 (163)
397 PRK08118 topology modulation p 94.5 0.026 5.5E-07 51.9 2.5 21 57-77 2-22 (167)
398 cd03261 ABC_Org_Solvent_Resist 94.4 0.024 5.1E-07 54.6 2.3 24 56-79 26-49 (235)
399 cd03225 ABC_cobalt_CbiO_domain 94.4 0.029 6.4E-07 52.9 2.9 24 56-79 27-50 (211)
400 PRK00771 signal recognition pa 94.4 0.027 5.9E-07 59.6 2.9 23 55-77 94-116 (437)
401 TIGR00960 3a0501s02 Type II (G 94.4 0.024 5.3E-07 53.7 2.3 24 56-79 29-52 (216)
402 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.025 5.3E-07 53.7 2.3 25 55-79 29-53 (218)
403 PRK10078 ribose 1,5-bisphospho 94.4 0.027 5.9E-07 52.3 2.6 22 57-78 3-24 (186)
404 KOG0466 Translation initiation 94.4 0.049 1.1E-06 54.4 4.3 99 121-232 125-242 (466)
405 KOG3859 Septins (P-loop GTPase 94.3 0.056 1.2E-06 53.4 4.6 68 54-137 40-111 (406)
406 PRK14530 adenylate kinase; Pro 94.3 0.028 6E-07 53.5 2.6 22 56-77 3-24 (215)
407 PF13671 AAA_33: AAA domain; P 94.3 0.026 5.7E-07 49.4 2.2 19 59-77 2-20 (143)
408 PF13238 AAA_18: AAA domain; P 94.3 0.027 5.8E-07 48.0 2.2 20 59-78 1-20 (129)
409 PRK13541 cytochrome c biogenes 94.3 0.03 6.6E-07 52.3 2.7 25 55-79 25-49 (195)
410 cd03265 ABC_DrrA DrrA is the A 94.3 0.026 5.7E-07 53.7 2.3 24 56-79 26-49 (220)
411 TIGR02673 FtsE cell division A 94.3 0.026 5.7E-07 53.3 2.3 24 56-79 28-51 (214)
412 PRK10872 relA (p)ppGpp synthet 94.3 0.076 1.6E-06 59.6 6.2 41 339-382 404-444 (743)
413 TIGR03608 L_ocin_972_ABC putat 94.3 0.032 7E-07 52.3 2.8 24 56-79 24-47 (206)
414 PF13555 AAA_29: P-loop contai 94.3 0.03 6.5E-07 43.0 2.1 20 58-77 25-44 (62)
415 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.03 6.5E-07 49.9 2.5 25 55-79 25-49 (144)
416 PRK03839 putative kinase; Prov 94.2 0.028 6E-07 51.7 2.3 21 57-77 1-21 (180)
417 PRK10751 molybdopterin-guanine 94.2 0.03 6.4E-07 52.0 2.4 24 55-78 5-28 (173)
418 TIGR00235 udk uridine kinase. 94.2 0.028 6.1E-07 53.1 2.3 23 56-78 6-28 (207)
419 TIGR01166 cbiO cobalt transpor 94.2 0.031 6.8E-07 51.9 2.6 24 56-79 18-41 (190)
420 KOG1707 Predicted Ras related/ 94.2 0.15 3.2E-06 55.0 7.8 88 51-163 420-507 (625)
421 PRK14723 flhF flagellar biosyn 94.2 0.021 4.6E-07 64.0 1.7 22 57-78 186-207 (767)
422 PRK05480 uridine/cytidine kina 94.2 0.033 7.1E-07 52.6 2.7 24 55-78 5-28 (209)
423 cd03264 ABC_drug_resistance_li 94.2 0.032 7E-07 52.7 2.6 22 58-79 27-48 (211)
424 PRK12727 flagellar biosynthesi 94.2 0.025 5.4E-07 61.0 2.0 24 55-78 349-372 (559)
425 cd03260 ABC_PstB_phosphate_tra 94.1 0.029 6.3E-07 53.6 2.3 25 55-79 25-49 (227)
426 cd02023 UMPK Uridine monophosp 94.1 0.027 5.9E-07 52.6 2.0 20 59-78 2-21 (198)
427 cd03222 ABC_RNaseL_inhibitor T 94.1 0.036 7.7E-07 51.6 2.7 25 55-79 24-48 (177)
428 cd03269 ABC_putative_ATPase Th 94.1 0.031 6.7E-07 52.7 2.3 24 56-79 26-49 (210)
429 COG0411 LivG ABC-type branched 94.1 0.014 3E-07 56.7 -0.1 23 57-79 31-53 (250)
430 cd03218 ABC_YhbG The ABC trans 94.1 0.037 8.1E-07 53.0 2.9 24 56-79 26-49 (232)
431 cd03259 ABC_Carb_Solutes_like 94.1 0.031 6.7E-07 52.8 2.3 24 56-79 26-49 (213)
432 cd03263 ABC_subfamily_A The AB 94.1 0.035 7.6E-07 52.7 2.7 23 57-79 29-51 (220)
433 cd01130 VirB11-like_ATPase Typ 94.0 0.035 7.5E-07 51.7 2.5 24 55-78 24-47 (186)
434 TIGR02315 ABC_phnC phosphonate 94.0 0.031 6.8E-07 53.9 2.3 24 56-79 28-51 (243)
435 TIGR02211 LolD_lipo_ex lipopro 94.0 0.039 8.6E-07 52.4 2.9 25 55-79 30-54 (221)
436 cd03262 ABC_HisP_GlnQ_permease 94.0 0.04 8.6E-07 52.0 2.9 24 56-79 26-49 (213)
437 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.032 7E-07 53.1 2.3 24 56-79 30-53 (220)
438 cd03226 ABC_cobalt_CbiO_domain 94.0 0.039 8.4E-07 51.9 2.8 25 55-79 25-49 (205)
439 PRK14242 phosphate transporter 94.0 0.032 6.9E-07 54.3 2.3 25 55-79 31-55 (253)
440 cd03292 ABC_FtsE_transporter F 94.0 0.038 8.3E-07 52.1 2.8 24 56-79 27-50 (214)
441 TIGR02322 phosphon_PhnN phosph 94.0 0.031 6.7E-07 51.3 2.1 21 58-78 3-23 (179)
442 PF09547 Spore_IV_A: Stage IV 94.0 0.95 2.1E-05 47.6 13.0 26 53-78 14-39 (492)
443 cd03257 ABC_NikE_OppD_transpor 94.0 0.04 8.6E-07 52.5 2.9 24 56-79 31-54 (228)
444 PRK06217 hypothetical protein; 94.0 0.035 7.7E-07 51.4 2.4 21 57-77 2-22 (183)
445 cd03216 ABC_Carb_Monos_I This 94.0 0.042 9.1E-07 50.0 2.9 25 55-79 25-49 (163)
446 cd03224 ABC_TM1139_LivF_branch 94.0 0.04 8.6E-07 52.3 2.8 24 56-79 26-49 (222)
447 PRK13540 cytochrome c biogenes 94.0 0.041 8.9E-07 51.6 2.9 25 55-79 26-50 (200)
448 cd03231 ABC_CcmA_heme_exporter 94.0 0.042 9.1E-07 51.6 2.9 25 55-79 25-49 (201)
449 cd03215 ABC_Carb_Monos_II This 93.9 0.042 9.1E-07 50.8 2.8 24 56-79 26-49 (182)
450 cd03229 ABC_Class3 This class 93.9 0.042 9.1E-07 50.6 2.9 24 56-79 26-49 (178)
451 COG1120 FepC ABC-type cobalami 93.9 0.073 1.6E-06 52.4 4.6 22 57-78 29-50 (258)
452 COG1134 TagH ABC-type polysacc 93.9 0.039 8.4E-07 53.6 2.6 24 55-78 52-75 (249)
453 COG0488 Uup ATPase components 93.9 0.035 7.5E-07 60.2 2.6 26 55-80 28-53 (530)
454 cd03258 ABC_MetN_methionine_tr 93.9 0.043 9.4E-07 52.6 2.9 24 56-79 31-54 (233)
455 cd03266 ABC_NatA_sodium_export 93.9 0.035 7.7E-07 52.6 2.3 24 56-79 31-54 (218)
456 PRK13543 cytochrome c biogenes 93.9 0.042 9.2E-07 52.2 2.8 25 55-79 36-60 (214)
457 PRK11264 putative amino-acid A 93.9 0.035 7.7E-07 53.8 2.3 24 56-79 29-52 (250)
458 TIGR01978 sufC FeS assembly AT 93.9 0.036 7.9E-07 53.4 2.4 24 56-79 26-49 (243)
459 TIGR01189 ccmA heme ABC export 93.8 0.045 9.8E-07 51.2 2.9 25 55-79 25-49 (198)
460 cd03301 ABC_MalK_N The N-termi 93.8 0.044 9.5E-07 51.7 2.8 24 56-79 26-49 (213)
461 KOG0054 Multidrug resistance-a 93.8 0.032 6.9E-07 66.1 2.2 24 54-77 1164-1187(1381)
462 PRK11124 artP arginine transpo 93.8 0.044 9.5E-07 52.9 2.8 24 56-79 28-51 (242)
463 cd03254 ABCC_Glucan_exporter_l 93.8 0.046 1E-06 52.2 2.9 24 56-79 29-52 (229)
464 cd03235 ABC_Metallic_Cations A 93.8 0.045 9.7E-07 51.8 2.8 24 56-79 25-48 (213)
465 PRK14262 phosphate ABC transpo 93.8 0.037 8.1E-07 53.7 2.3 24 56-79 29-52 (250)
466 cd03256 ABC_PhnC_transporter A 93.8 0.038 8.1E-07 53.2 2.3 24 56-79 27-50 (241)
467 PRK14247 phosphate ABC transpo 93.8 0.038 8.2E-07 53.7 2.3 24 56-79 29-52 (250)
468 cd02038 FleN-like FleN is a me 93.7 0.083 1.8E-06 46.8 4.3 33 121-162 45-77 (139)
469 PRK12723 flagellar biosynthesi 93.7 0.061 1.3E-06 56.1 3.9 22 56-77 174-195 (388)
470 PRK14269 phosphate ABC transpo 93.7 0.039 8.4E-07 53.5 2.3 24 56-79 28-51 (246)
471 cd03214 ABC_Iron-Siderophores_ 93.7 0.05 1.1E-06 50.2 2.9 25 55-79 24-48 (180)
472 PRK11629 lolD lipoprotein tran 93.7 0.04 8.6E-07 53.0 2.3 24 56-79 35-58 (233)
473 cd03219 ABC_Mj1267_LivG_branch 93.7 0.038 8.2E-07 53.0 2.2 24 56-79 26-49 (236)
474 PRK14239 phosphate transporter 93.7 0.039 8.5E-07 53.5 2.3 24 56-79 31-54 (252)
475 PRK04040 adenylate kinase; Pro 93.7 0.047 1E-06 51.2 2.7 22 56-77 2-23 (188)
476 PRK14241 phosphate transporter 93.7 0.04 8.7E-07 53.8 2.3 24 56-79 30-53 (258)
477 PRK10584 putative ABC transpor 93.7 0.046 1E-06 52.2 2.6 25 55-79 35-59 (228)
478 PRK10908 cell division protein 93.6 0.049 1.1E-06 51.9 2.8 25 55-79 27-51 (222)
479 PRK11248 tauB taurine transpor 93.6 0.05 1.1E-06 53.3 2.9 24 56-79 27-50 (255)
480 TIGR01360 aden_kin_iso1 adenyl 93.6 0.049 1.1E-06 50.0 2.7 22 56-77 3-24 (188)
481 cd03247 ABCC_cytochrome_bd The 93.6 0.053 1.2E-06 49.9 2.9 24 56-79 28-51 (178)
482 cd03233 ABC_PDR_domain1 The pl 93.6 0.04 8.7E-07 51.9 2.1 24 56-79 33-56 (202)
483 TIGR03864 PQQ_ABC_ATP ABC tran 93.6 0.049 1.1E-06 52.4 2.8 24 56-79 27-50 (236)
484 cd03268 ABC_BcrA_bacitracin_re 93.6 0.046 1E-06 51.4 2.6 24 56-79 26-49 (208)
485 cd03217 ABC_FeS_Assembly ABC-t 93.6 0.042 9.1E-07 51.6 2.3 24 56-79 26-49 (200)
486 COG3638 ABC-type phosphate/pho 93.6 0.042 9E-07 53.3 2.2 34 58-103 32-65 (258)
487 cd01858 NGP_1 NGP-1. Autoanti 93.6 0.16 3.5E-06 45.6 6.0 72 146-230 3-94 (157)
488 PRK13539 cytochrome c biogenes 93.6 0.053 1.1E-06 51.2 2.9 25 55-79 27-51 (207)
489 PRK10895 lipopolysaccharide AB 93.6 0.051 1.1E-06 52.4 2.9 25 55-79 28-52 (241)
490 PRK08233 hypothetical protein; 93.6 0.048 1E-06 49.8 2.5 23 56-78 3-25 (182)
491 PRK15177 Vi polysaccharide exp 93.6 0.055 1.2E-06 51.5 3.1 24 56-79 13-36 (213)
492 cd03296 ABC_CysA_sulfate_impor 93.6 0.05 1.1E-06 52.5 2.8 24 56-79 28-51 (239)
493 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.061 1.3E-06 52.8 3.4 22 57-78 31-52 (254)
494 COG1124 DppF ABC-type dipeptid 93.6 0.098 2.1E-06 50.9 4.7 26 56-81 33-58 (252)
495 cd03236 ABC_RNaseL_inhibitor_d 93.6 0.051 1.1E-06 53.4 2.9 24 56-79 26-49 (255)
496 TIGR02323 CP_lyasePhnK phospho 93.6 0.052 1.1E-06 52.8 2.9 25 55-79 28-52 (253)
497 PRK10575 iron-hydroxamate tran 93.5 0.041 9E-07 54.1 2.2 25 55-79 36-60 (265)
498 TIGR03410 urea_trans_UrtE urea 93.5 0.053 1.1E-06 51.9 2.9 24 56-79 26-49 (230)
499 PRK14273 phosphate ABC transpo 93.5 0.043 9.4E-07 53.4 2.3 25 55-79 32-56 (254)
500 PRK14274 phosphate ABC transpo 93.5 0.043 9.3E-07 53.7 2.3 24 56-79 38-61 (259)
No 1
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=6.7e-89 Score=689.34 Aligned_cols=361 Identities=57% Similarity=0.907 Sum_probs=339.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|||||+||||||||||+||+. .+.++++||||++|+.|.+.+++.|++.|+++++|++.+++++.++||||+++++
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~-~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKA-GAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-CCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 479999999999999999999954 4899999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
+.+++++++|++++++||+++||||+|.++.+.|+.+..||++|++.++.||.++|.+.++++++++.+..+... +.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~---~~ 157 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD---KE 157 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc---hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654322 12
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
...+.+++++|.+.|+++.|++..+||+++.+.+++++++|.||++|++|+++.|+.+. +++.+++++|+.+++.++|
T Consensus 158 ~~~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~--~~~~~~i~~~~~~~~~~~i 235 (364)
T PRK09601 158 AKAELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADG--NPYVKKVREIAAKEGAEVV 235 (364)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccc--cHHHHHHHHHHHHcCCeEE
Confidence 24566789999999999999998899999999999999999999999999998887644 7899999999988888999
Q ss_pred EechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhh
Q 012870 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEK 375 (454)
Q Consensus 296 ~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~k 375 (454)
++||++|.+|.+|+++++++||+++|+.+||++++++++|++||||+|||+|++|+|||||++||||+||||+|||||+|
T Consensus 236 ~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~k 315 (364)
T PRK09601 236 VICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEK 315 (364)
T ss_pred EEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEehh
Q 012870 376 GFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWNS 422 (454)
Q Consensus 376 gFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~~ 422 (454)
|||||||++|+||+++||++.||++||+|+||++|.+| |+.+|+||.
T Consensus 316 gFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 316 GFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred ccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 99999999999999999999999999999999999999 999999983
No 2
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=7.2e-87 Score=681.49 Aligned_cols=365 Identities=46% Similarity=0.742 Sum_probs=340.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|||||+||||||||||+|| +..+.++++||||++|+.|.+.++|.|++.|+.+++|++.+++++.|+||||+++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt-~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC-KQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh-cCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 466899999999999999999999 5568999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+++.+++++++|++++++||+++||||+++++++.|+.+..||++|++.+++||.++|.+.++++++++.+..+... ..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~-~~ 176 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKK-KK 176 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccc-ch
Confidence 99988999999999999999999999999999999999999999999999999999999999999999887632111 11
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEecccccc-CCCCCCccHHHHHHHHhhc-C
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDL-Q 291 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~-~~~~~~~~~~~i~~~~~~~-~ 291 (454)
+......++++++.+.|+++.|++..+||++|.+++++++++|.||++|++|+++.|+ ..+ +.+.+++++++.++ +
T Consensus 177 ~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~--~~~~~~l~~~~~~~~~ 254 (390)
T PTZ00258 177 KEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQK--NKWLAKIKEWVGEKGG 254 (390)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccc--hHHHHHHHHHHHhcCC
Confidence 2334567889999999999999998899999999999999999999999999998777 333 67899999998877 4
Q ss_pred CcEEEechhhhHHhcCC-CHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhhhc
Q 012870 292 SGRVTISAQVEAELTEL-PSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIH 370 (454)
Q Consensus 292 ~~~v~iSA~~E~~l~~l-~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~IH 370 (454)
.++|++||+.|.+|++| +++++.+||++||+.+||++++++++|++||||+|||+||+|+|||||++||||+||||+||
T Consensus 255 ~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~aAg~IH 334 (390)
T PTZ00258 255 GPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIH 334 (390)
T ss_pred CeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHHHhhhh
Confidence 78999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEehh
Q 012870 371 SDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWNS 422 (454)
Q Consensus 371 sD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~~ 422 (454)
|||+|||||||||+|+||+++||+++||++||+|+||++|.+| |+.+|+||-
T Consensus 335 sD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fnv 388 (390)
T PTZ00258 335 SDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNV 388 (390)
T ss_pred hHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999 999999994
No 3
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=1.9e-86 Score=671.51 Aligned_cols=360 Identities=47% Similarity=0.676 Sum_probs=334.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc-ccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~-~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
|.+++||||+||+|||||||+||+ ..+ .+++|||||.+|+.|++.++|+|++.|+.+++|++.+++++.++|+||+++
T Consensus 1 m~lk~GivGlPn~GKSTlfnaLT~-~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 1 MGLSGGIVGLPNVGKSTLFAATTN-LLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred CCceEEEECCCCCChHHHHHHHhC-CCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 348999999999999999999994 456 899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+++++++++++||+++|++|+++||||+|+++.+.|+.+..||.+|+.+++.||.++|.+.++++++++.+..+..
T Consensus 80 gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~---- 155 (368)
T TIGR00092 80 GASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG---- 155 (368)
T ss_pred chhcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhh---c
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD---L 290 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~---~ 290 (454)
+....+..+++++.++|++++|++...|++++..+++.++++|.||++|++|++++++.++ ++.+...++ |+.+ .
T Consensus 156 k~~~~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~-n~~~~~~~~-~~~~~~~~ 233 (368)
T TIGR00092 156 KDKKEELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNL-NNNYLLIVE-WIAAYSKG 233 (368)
T ss_pred hhhHHHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhc-ccHHHHHHH-HHhhcCcC
Confidence 2334567899999999999999998789999999999999999999999999998776432 144555555 8776 4
Q ss_pred CCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCc-hHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhhh
Q 012870 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSES-GLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVI 369 (454)
Q Consensus 291 ~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~-~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~I 369 (454)
+.+++++||+.|.++.+|++||+.+||+++|+.+| |++++++.+|++|||++|||+|++|+|||||++|+||+||||+|
T Consensus 234 ~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~I 313 (368)
T TIGR00092 234 DPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGII 313 (368)
T ss_pred CCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCc
Confidence 67799999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred chhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEeh
Q 012870 370 HSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWN 421 (454)
Q Consensus 370 HsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~ 421 (454)
||||+||||||||++|+||+++||+++||++||+|+|||+|.+| |+++|+||
T Consensus 314 HsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fn 367 (368)
T TIGR00092 314 HTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFN 367 (368)
T ss_pred ccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999 99999998
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-86 Score=659.59 Aligned_cols=365 Identities=53% Similarity=0.827 Sum_probs=341.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhccccc-CccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK-SQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~-~~~~~~~~i~lvDtpGl~~ 133 (454)
|.+++||||+||||||||||||| ...+.++||||||++||.|++.++|.|++.|+++++ |+++++..+.|+|+||+++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT-~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALT-KAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHH-cCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 56899999999999999999999 555999999999999999999999999999999999 7999999999999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
++|+|+||||+||+++|++|+|+||||||+++++.|+.+.+||++|+++++.||++||.+.++++++++.+..+.+..-.
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~ 159 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLD 159 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876432112
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCC---CCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARS---VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~---~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~ 290 (454)
+.......+++.+.+.|.++.+.+. ..|++++...+++++++|.||++|++||++.+..+. +++++.++++++++
T Consensus 160 k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~--n~~~~~i~~~~~~~ 237 (372)
T COG0012 160 KELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANL--NEYVKRLKELAAKE 237 (372)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccch--hHHHHHHHHHhhhc
Confidence 4445566788899999999888663 379999999999999999999999999998887654 67899999999888
Q ss_pred CCcEEEechhhhHHhcCCCH-HHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhhh
Q 012870 291 QSGRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVI 369 (454)
Q Consensus 291 ~~~~v~iSA~~E~~l~~l~~-ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~I 369 (454)
+.++||+||+.|.+|++|++ +++.+|+..+|+..+|+++++.+.|.+|||++|||+|++|+|||||++|+||+|+||.|
T Consensus 238 ~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~I 317 (372)
T COG0012 238 NAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVI 317 (372)
T ss_pred CCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCcc
Confidence 88999999999999999987 88999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEehh
Q 012870 370 HSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWNS 422 (454)
Q Consensus 370 HsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~~ 422 (454)
||||++|||+|+|++|+||+.+||++.||++||+|+||++|.+| |+++|+||+
T Consensus 318 h~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 318 HPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred ccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999 999999985
No 5
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=2.4e-81 Score=611.98 Aligned_cols=366 Identities=47% Similarity=0.733 Sum_probs=338.3
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
.++.+++||||+||||||||||+|| +..+.++|+||||+||+.+.+.++|.|++.|+.+|+|++.+|+.+.+.|++|++
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT-~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALT-KSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHh-cCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 3467899999999999999999999 777779999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcc
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vS 212 (454)
+++|.|+|+||+||+++|.||+|+||||+|++.++.|+.+.+||++|++++++||.++|.+.++++++++.+......-+
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~~ 175 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKSN 175 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776433211
Q ss_pred --ccchHHHHHHHHHHHHhhhCCC-CCCC-CCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHh
Q 012870 213 --KLKEDAEKAALEKIQQALMDGK-PARS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288 (454)
Q Consensus 213 --ak~~~~~~~ll~~i~~~L~~~~-~~~~-~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~ 288 (454)
.+..+-...+++++.+.|.+++ +..+ ..|++++.+++.+++++|.||++|++|+++.|+.++ ++.++..+++|.+
T Consensus 176 ~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~-knk~l~~i~~w~~ 254 (391)
T KOG1491|consen 176 LETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARK-KNKKLPKIKEWVD 254 (391)
T ss_pred HHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhH-HHHHHhhhhhhhh
Confidence 1333344678899999886554 4344 489999999999999999999999999999988765 5889999999987
Q ss_pred hc--CCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHh
Q 012870 289 DL--QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAA 366 (454)
Q Consensus 289 ~~--~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aA 366 (454)
++ |..++|.|+.+|.++.+|.+||+.+++++++.. ++|+++|.+.|+.|+||.|||+|++|||+|||++|++|++||
T Consensus 255 ~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~-s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~gt~ap~aa 333 (391)
T KOG1491|consen 255 EVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDS-SALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKGTKAPQAA 333 (391)
T ss_pred ccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccc-cchhHHHHHHHHhhCceEEEeeCCchheeeehhhcccccccc
Confidence 65 678999999999999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEeh
Q 012870 367 GVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWN 421 (454)
Q Consensus 367 g~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~ 421 (454)
|+|||||++|||.|+|+.|+||+.+||+.++|.+||.|.+|+.|.++ |+.+|+||
T Consensus 334 gvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~ 390 (391)
T KOG1491|consen 334 GVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFN 390 (391)
T ss_pred ceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEeec
Confidence 99999999999999999999999999999999999999999999998 99999998
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=2e-57 Score=468.71 Aligned_cols=337 Identities=29% Similarity=0.401 Sum_probs=272.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeee----CCCccchhccccc---CccccCceeEEEec
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLSK---SQKAVPASVEFVDI 128 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~----~d~r~~~l~~~~~---~~~~~~~~i~lvDt 128 (454)
+++|||||+||||||||||+|| +..+.++++||||++|+.|++.+ ++.|++.++...+ +.+..+++++++||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt-~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAAT-LADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHh-CCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 3699999999999999999999 55678899999999999999887 5567777655444 44466788999999
Q ss_pred CCccCCCCcccccccccccchhccceEEEEEeccCCc---ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhc
Q 012870 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN---DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG 205 (454)
Q Consensus 129 pGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~---~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~ 205 (454)
||++++++.+++++++|++++++||+++||||++.+. ...+..+..||++|+++++.||.++|.+.++++++++.+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999543 2333378899999999999999999999999999988765
Q ss_pred ccCCCcc-ccchHHHHHHH----HHHHHhhh-CCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCcc
Q 012870 206 KAKDSQS-KLKEDAEKAAL----EKIQQALM-DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH 279 (454)
Q Consensus 206 ~~~~~vS-ak~~~~~~~ll----~~i~~~L~-~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~ 279 (454)
.+.+... .........++ +.|.+.|+ .+.+.+...|++++...++++.+++.||++||+||.| ..+. +..
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D--~~~~--~~~ 235 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKAD--LPPA--EEN 235 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchh--cccc--hHH
Confidence 4332200 00111111222 67888897 4677776689999999999999999999999999986 3222 334
Q ss_pred HHHHHHHHhhcCCcEEEechhhhHHhcC---------------------CCHHHH------HHHHHHcCCCCchHHHHH-
Q 012870 280 VNEVMNLASDLQSGRVTISAQVEAELTE---------------------LPSEER------VEYLASLGVSESGLGNLI- 331 (454)
Q Consensus 280 ~~~i~~~~~~~~~~~v~iSA~~E~~l~~---------------------l~~ee~------~e~l~~~gl~~~~l~~li- 331 (454)
+.++.++ .+..++++||+.|.++.+ ++++++ ++||..+|+ ||+++++
T Consensus 236 l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~--~~~~~~i~ 310 (396)
T PRK09602 236 IERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG--TGVQEAIN 310 (396)
T ss_pred HHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 5555554 345699999999998866 554431 388999998 8999999
Q ss_pred HHHHhHhCCeEEecCCC----------CCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcC
Q 012870 332 RSTYSLLGLRTYFTSGE----------KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 401 (454)
Q Consensus 332 ~~~~~~L~li~ffT~g~----------~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~g 401 (454)
+++|++||||+|||+++ +++|||++++|+||+|+|++|||||+++||||+. ||
T Consensus 311 ~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~--------------~~--- 373 (396)
T PRK09602 311 TAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID--------------AR--- 373 (396)
T ss_pred HHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--------------cc---
Confidence 89999999999999976 5677999999999999999999999999999992 33
Q ss_pred Ceeecccccccc--eeeEEE
Q 012870 402 LVSWLHYHEHLA--SYKYFH 419 (454)
Q Consensus 402 k~r~eg~~~~~~--~~~~~~ 419 (454)
+.|.+|++|.++ |++.|.
T Consensus 374 ~~~~~g~~~~l~dgDiv~i~ 393 (396)
T PRK09602 374 TKRRIGEDYELKDGDVIKIV 393 (396)
T ss_pred CCcccCCCcEecCCCEEEEE
Confidence 578999999999 565553
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=2.2e-54 Score=425.07 Aligned_cols=274 Identities=58% Similarity=0.915 Sum_probs=252.8
Q ss_pred EEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCcc
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (454)
|||||+||||||||||+||+ ....++++||||++|+.|.+.+++.|++.|+++++|+|.+++++.++||||++++++.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~-~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK-AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhC-CCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 68999999999999999995 45599999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccchHH
Q 012870 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA 218 (454)
Q Consensus 139 ~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~~~~ 218 (454)
++++++|++++++||+++||||+|+++++.|+.+.+||++|+..++.||.+||.+.++++++++.+..+.+. +....
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~---~~~~~ 156 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD---KEAKA 156 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc---HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987654322 23456
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEEEec
Q 012870 219 EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298 (454)
Q Consensus 219 ~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~iS 298 (454)
+.++++++.++|+++.|++...||+++.+.+++++++|.||++|++|++++|+.+. +...+++..++...+.++|++|
T Consensus 157 e~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~--~~~~~~~~~~~~~~~~~~i~~s 234 (274)
T cd01900 157 ELELLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANG--NNKVLKVREIAAKEGAEVIPIS 234 (274)
T ss_pred HHHHHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccc--cHHHHHHHHHHhcCCCeEEEee
Confidence 77899999999999999998899999999999999999999999999998887644 5566777777777788899999
Q ss_pred hhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHh
Q 012870 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 338 (454)
Q Consensus 299 A~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L 338 (454)
|++|.+|++|+++|+++|++++|+.+|+++++|+++|++|
T Consensus 235 a~~E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 235 AKIEAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999987
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=310.84 Aligned_cols=268 Identities=28% Similarity=0.396 Sum_probs=198.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
+...+|++||+||||||||+|+|| +....+++|||||+.|++|++.+.+ ++|+++|+||++.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LT-nt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~ 122 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLT-NTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIE 122 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHh-CCCccccccCceecccccceEeecC-----------------ceEEEEcCccccc
Confidence 345799999999999999999999 7889999999999999999999985 8999999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHH--HHhcccCCCc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK--LKKGKAKDSQ 211 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~--~~~~~~~~~v 211 (454)
+++.+.+.|.++++.+|+||+|++|+|++.+. ..++.+..||.-..+-. .+.... +++. ..+.|
T Consensus 123 gas~g~grG~~vlsv~R~ADlIiiVld~~~~~------------~~~~~i~~ELe~~GIrl-nk~~p~V~I~kk-~~gGI 188 (365)
T COG1163 123 GASSGRGRGRQVLSVARNADLIIIVLDVFEDP------------HHRDIIERELEDVGIRL-NKRPPDVTIKKK-ESGGI 188 (365)
T ss_pred CcccCCCCcceeeeeeccCCEEEEEEecCCCh------------hHHHHHHHHHHhcCeEe-cCCCCceEEEEe-ccCCE
Confidence 99999999999999999999999999986542 12566666654332211 111111 1111 11222
Q ss_pred cccchHHH-HHHHHHHHHhhhCCCCCCCC-----CCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHH
Q 012870 212 SKLKEDAE-KAALEKIQQALMDGKPARSV-----TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN 285 (454)
Q Consensus 212 Sak~~~~~-~~ll~~i~~~L~~~~~~~~~-----~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~ 285 (454)
....-..+ .--.+.+...|.+.+.+... +.|-++..-.- ...+.++|.+|++||.| ... .+.+..
T Consensus 189 ~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l-~~nrvY~p~l~v~NKiD--~~~------~e~~~~ 259 (365)
T COG1163 189 RINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDAL-EGNRVYKPALYVVNKID--LPG------LEELER 259 (365)
T ss_pred EEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHH-hhcceeeeeEEEEeccc--ccC------HHHHHH
Confidence 21111111 12356777888888766652 56654322111 23478999999999984 332 333444
Q ss_pred HHhhcCCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCC----eeeEEecCCCC
Q 012870 286 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE----TKAWTIRAGMT 361 (454)
Q Consensus 286 ~~~~~~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e----~raw~i~~Gst 361 (454)
..+. ...+++||+... +++.|.+.+|+.||+|++||+.+++ ..+.++++|||
T Consensus 260 l~~~--~~~v~isa~~~~----------------------nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsT 315 (365)
T COG1163 260 LARK--PNSVPISAKKGI----------------------NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGST 315 (365)
T ss_pred HHhc--cceEEEecccCC----------------------CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCc
Confidence 3332 258999988653 4578889999999999999998876 37899999999
Q ss_pred HHHHhhhhchhhhhCceEEEEeehh
Q 012870 362 APQAAGVIHSDFEKGFIRAETVAYD 386 (454)
Q Consensus 362 a~~aAg~IHsD~~kgFi~AeV~~~~ 386 (454)
+.|+|.+||+||.+.|.||.||+-+
T Consensus 316 V~Dvc~~IH~~l~~~FryA~VWGkS 340 (365)
T COG1163 316 VGDVCRKIHRDLVENFRYARVWGKS 340 (365)
T ss_pred HHHHHHHHHHHHHHhcceEEEeccC
Confidence 9999999999999999999999974
No 9
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=4.6e-37 Score=245.38 Aligned_cols=82 Identities=59% Similarity=0.866 Sum_probs=74.3
Q ss_pred CeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeE
Q 012870 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKY 417 (454)
Q Consensus 340 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~ 417 (454)
||+|||+||+|+||||+++|+||+||||+|||||+||||+|||++|+||+++||+++||++||+|+||++|++| |+++
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEeh
Q 012870 418 FHWN 421 (454)
Q Consensus 418 ~~~~ 421 (454)
|+||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
No 10
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=6.9e-37 Score=242.79 Aligned_cols=81 Identities=51% Similarity=0.807 Sum_probs=79.1
Q ss_pred CeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeE
Q 012870 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKY 417 (454)
Q Consensus 340 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~ 417 (454)
|++|||+||+|+|||||++|+||+||||+|||||+||||+|||++|+||+++||+++||++||+|+|||+|++| |+++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred EEe
Q 012870 418 FHW 420 (454)
Q Consensus 418 ~~~ 420 (454)
|+|
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 886
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=1e-35 Score=299.12 Aligned_cols=241 Identities=30% Similarity=0.441 Sum_probs=192.4
Q ss_pred EEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeee----CCCccchhccc-----ccCccccCceeEEEecC
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGL-----SKSQKAVPASVEFVDIA 129 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~----~d~r~~~l~~~-----~~~~~~~~~~i~lvDtp 129 (454)
|||||+||||||||||+|| +..+.++++||||++|+.|.+.+ ++.|++.++.. .++.+. .++++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt-~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~--v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT-LADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY--VPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHh-CCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc--ceEEEEECC
Confidence 6899999999999999999 56689999999999999999887 67888888754 233333 459999999
Q ss_pred CccCCCCcccccccccccchhccceEEEEEeccCCcc---eEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcc
Q 012870 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (454)
Q Consensus 130 Gl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~---v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~ 206 (454)
|++++++.+.+++++|++++++||+++||+|++++.+ +.|+.+..||.+|++++++||.+||.+.++++++++.+..
T Consensus 78 Glv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999899999999999999999999999997544 4788899999999999999999999999999999988765
Q ss_pred cCCCcc-ccchHHHHHHH----HHHHHhhhCCC-CCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccH
Q 012870 207 AKDSQS-KLKEDAEKAAL----EKIQQALMDGK-PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 280 (454)
Q Consensus 207 ~~~~vS-ak~~~~~~~ll----~~i~~~L~~~~-~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~ 280 (454)
..+... .....+...++ +.+.+.|+++. +.+...|++++.+.+.++++++.||++|++||.| +.+. +...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~D--l~~~--~~~~ 233 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKAD--IPDA--ENNI 233 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHH--ccCh--HHHH
Confidence 433211 11223333444 77888887755 5555589999999999999999999999999985 4433 3344
Q ss_pred HHHHHHHhhcCCcEEEechhhhHHhcCC
Q 012870 281 NEVMNLASDLQSGRVTISAQVEAELTEL 308 (454)
Q Consensus 281 ~~i~~~~~~~~~~~v~iSA~~E~~l~~l 308 (454)
+.++. .....+++++||+.|.++.+|
T Consensus 234 ~~l~~--~~~~~~iI~iSA~~e~~L~~L 259 (318)
T cd01899 234 SKLRL--KYPDEIVVPTSAEAELALRRA 259 (318)
T ss_pred HHHHh--hCCCCeEEEEeCcccccHHHH
Confidence 43332 222457999999999887655
No 12
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-31 Score=248.82 Aligned_cols=269 Identities=23% Similarity=0.304 Sum_probs=195.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
+...+|++||+|+||||||+..+| .-....+.|.|||....+|++.+.+ +.|+++|.||++.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT-~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIie 121 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKIT-STHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIE 121 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhh-cchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCccccc
Confidence 345799999999999999999999 6678889999999999999999985 7799999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+++++.|.+++..+..|.||+|++|+|+...+ .+...+++||....+..-.++..-.-+..+.+.+|.
T Consensus 122 GAsqgkGRGRQviavArtaDlilMvLDatk~e------------~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f 189 (364)
T KOG1486|consen 122 GASQGKGRGRQVIAVARTADLILMVLDATKSE------------DQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISF 189 (364)
T ss_pred ccccCCCCCceEEEEeecccEEEEEecCCcch------------hHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEE
Confidence 99999999999999999999999999986432 234566666543222111111000011111222332
Q ss_pred cchHHHHH-HHHHHHHhhhCCCCCCC-----CCCCHHH-HHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHH
Q 012870 214 LKEDAEKA-ALEKIQQALMDGKPARS-----VTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286 (454)
Q Consensus 214 k~~~~~~~-ll~~i~~~L~~~~~~~~-----~~lt~ee-~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~ 286 (454)
..-...-. --..+...|.+.+.... .+.|.++ ...+ .+...+-|++||-||.| ...++++...
T Consensus 190 ~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi--~gnr~Y~~ClYvYnKID--------~vs~eevdrl 259 (364)
T KOG1486|consen 190 NTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVI--EGNRVYIKCLYVYNKID--------QVSIEEVDRL 259 (364)
T ss_pred eeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHH--hccceEEEEEEEeeccc--------eecHHHHHHH
Confidence 11111111 11234445666554443 2455443 2222 35668899999999984 3457888888
Q ss_pred HhhcCCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCC----eeeEEecCCCCH
Q 012870 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE----TKAWTIRAGMTA 362 (454)
Q Consensus 287 ~~~~~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e----~raw~i~~Gsta 362 (454)
++..+ .+++|+.+.. +++++++.+|+.|+|.++||+.++. .++.++++|+|+
T Consensus 260 Ar~Pn--svViSC~m~l----------------------nld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tv 315 (364)
T KOG1486|consen 260 ARQPN--SVVISCNMKL----------------------NLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTV 315 (364)
T ss_pred hcCCC--cEEEEecccc----------------------CHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcH
Confidence 87544 4777765432 4589999999999999999998665 579999999999
Q ss_pred HHHhhhhchhhhhCceEEEEeehh
Q 012870 363 PQAAGVIHSDFEKGFIRAETVAYD 386 (454)
Q Consensus 363 ~~aAg~IHsD~~kgFi~AeV~~~~ 386 (454)
.|+|..||.||+..|.||-||+-.
T Consensus 316 e~~C~~iHr~l~~qfkyAlVWGtS 339 (364)
T KOG1486|consen 316 EDVCHRIHRTLAAQFKYALVWGTS 339 (364)
T ss_pred HHHHHHHHHHHHHhhceeeEeccc
Confidence 999999999999999999999864
No 13
>COG2262 HflX GTPases [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=253.20 Aligned_cols=192 Identities=26% Similarity=0.333 Sum_probs=153.4
Q ss_pred ccccccccccccccCCCCCCchhhhhhhccccCCCCCCcc----h--------------------hhhhhhhhccccCCc
Q 012870 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTT----S--------------------SRRRFSSASKISMSL 57 (454)
Q Consensus 2 v~lA~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~g~~~~----~--------------------~~~~~~~~~~~~~~~ 57 (454)
||||||+|++|||.+.++.++ +.|||+|.+|||+. + .+...|.+|.....+
T Consensus 119 VeLAqL~Y~lpRl~~~~~~l~-----~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p 193 (411)
T COG2262 119 VELAQLRYELPRLVGSGSHLS-----RLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIP 193 (411)
T ss_pred hhHHhhhhhhhHhHhhhhhcc-----cccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 899999999999999999884 57899999999981 1 124455666667789
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
.|++|||+|||||||||+|| +....+.+..|+|.||....+.+++ +.++.+.||.||+...++
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT-~~~~~~~d~LFATLdpttR~~~l~~----------------g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALT-GADVYVADQLFATLDPTTRRIELGD----------------GRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred eEEEEeeccccHHHHHHHHh-ccCeeccccccccccCceeEEEeCC----------------CceEEEecCccCcccCCh
Confidence 99999999999999999999 7788899999999999999999987 357999999999987764
Q ss_pred cccccccc---ccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 138 GEGLGNKF---LSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 138 ~~~l~~~f---l~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.+...| |.+..+||+++||||+|++. +++.+.|++|.+.+...
T Consensus 257 --~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~------------ 322 (411)
T COG2262 257 --PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI------------ 322 (411)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh------------
Confidence 477777 56678899999999999842 45666677665544321
Q ss_pred HHHHHHHHHhccc-CCCccccchHHHHHHHHHHHHhhhCC
Q 012870 195 IEKRMEKLKKGKA-KDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 195 l~~~~~~~~~~~~-~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
+..+....+ ...+||+++.|++.|.+.|.+.++..
T Consensus 323 ----~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 323 ----LAELERGSPNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred ----hhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 112222222 23489999999999999999988754
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=6.6e-28 Score=234.98 Aligned_cols=188 Identities=30% Similarity=0.318 Sum_probs=152.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
..|+|||+||||||||+|+|.|.+.+.+|++|+||+....|.++.++ .|+.|+||||+.++.+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcch
Confidence 46899999999999999999999999999999999999999998774 7999999999998865
Q ss_pred c-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 137 ~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
. ++.|.+...+.+.+||++++|+|+.+. .+++.+.|++|.+.+-..+ ....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l------------~~~~ 137 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVL------------LKLI 137 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHH------------HHHH
Confidence 4 666667778899999999999999872 2556677777765443321 2222
Q ss_pred HHHHhcc---cCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HHHHHH-HHhhhccCcEEEEEecccc
Q 012870 200 EKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (454)
Q Consensus 200 ~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~e~lr-~~~~lt~kpi~~v~N~~~~ 269 (454)
+.+.... ...++||++|.|++.|++.+.+.|++++++|+. .+||. ..|++| ++++.+..++||++.+..+
T Consensus 138 ~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe 217 (298)
T COG1159 138 AFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIE 217 (298)
T ss_pred HHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEE
Confidence 2222222 234699999999999999999999999999997 45655 688899 8889999999999999877
Q ss_pred ccCC
Q 012870 270 DLAD 273 (454)
Q Consensus 270 d~~~ 273 (454)
++.+
T Consensus 218 ~~~~ 221 (298)
T COG1159 218 EFEE 221 (298)
T ss_pred EEEe
Confidence 6643
No 15
>PRK11058 GTPase HflX; Provisional
Probab=99.92 E-value=2e-25 Score=233.03 Aligned_cols=192 Identities=24% Similarity=0.290 Sum_probs=134.3
Q ss_pred ccccccccccccccCCCCCCchhhhhhhccccCCCCCCcch----hh--------------------hhhhhhccccCCc
Q 012870 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS----SR--------------------RRFSSASKISMSL 57 (454)
Q Consensus 2 v~lA~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~g~~~~~----~~--------------------~~~~~~~~~~~~~ 57 (454)
||||||+|++|||.+.+.++ ++++||+|.+|+|+.. ++ ...+..+.....+
T Consensus 124 velA~l~y~~prl~~~~~~l-----~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p 198 (426)
T PRK11058 124 VELAQLRHLATRLVRGWTHL-----ERQKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVP 198 (426)
T ss_pred HHHHhhhhhhhhhhccccch-----hhhcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC
Confidence 89999999999999988877 5688999999999821 11 1111122223447
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+|||+||||||||||+|++.. ..+++.||+|+++..+.+.+++ ..++.+|||||+.+..+.
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~-~~v~~~~~tTld~~~~~i~l~~----------------~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEAR-VYAADQLFATLDPTLRRIDVAD----------------VGETVLADTVGFIRHLPH 261 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-eeeccCCCCCcCCceEEEEeCC----------------CCeEEEEecCcccccCCH
Confidence 99999999999999999999655 4488999999999998887764 236899999999654332
Q ss_pred cccccccc---ccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 138 GEGLGNKF---LSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 138 ~~~l~~~f---l~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.+...| +..+++||++++|+|++++. +++.+.|+.|...+..
T Consensus 262 --~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~------------- 326 (426)
T PRK11058 262 --DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE------------- 326 (426)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-------------
Confidence 223334 56678999999999998742 2344445555332110
Q ss_pred HHHHHHHHHhccc-CCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRMEKLKKGKA-KDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~~~~~~~~-~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..........+ ...+||++|.|+++|++.+.+.+..
T Consensus 327 --~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 327 --PRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred --HHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 00010111111 1338999999999999999888753
No 16
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=213.80 Aligned_cols=107 Identities=44% Similarity=0.704 Sum_probs=96.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
..||+||+||||||||+|+++ .+...+++|||||+.|+.|++.+.+ ...+++-|+||++++++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS-~AkPKIadYpFTTL~PnLGvV~~~~----------------~~sfv~ADIPGLIEGAs 222 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVS-AAKPKIADYPFTTLVPNLGVVRVDG----------------GESFVVADIPGLIEGAS 222 (369)
T ss_pred cccccccCCCCcHHHHHHHHh-hcCCcccCCccccccCcccEEEecC----------------CCcEEEecCcccccccc
Confidence 458999999999999999999 8999999999999999999999854 34699999999999999
Q ss_pred cccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhh
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLEL 187 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el 187 (454)
.+.+++.+||+|+.+|-+++||||++..+ ..||.+++..|+.||
T Consensus 223 ~G~GLG~~FLrHIERt~vL~hviD~s~~~-------~~dp~~~~~~i~~EL 266 (369)
T COG0536 223 EGVGLGLRFLRHIERTRVLLHVIDLSPID-------GRDPIEDYQTIRNEL 266 (369)
T ss_pred cCCCccHHHHHHHHhhheeEEEEecCccc-------CCCHHHHHHHHHHHH
Confidence 99999999999999999999999997643 267888888877665
No 17
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.91 E-value=9.7e-25 Score=213.01 Aligned_cols=164 Identities=31% Similarity=0.486 Sum_probs=127.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
....||+||+||||||||+|+|+ ++...+++|||||+.|+.|.+.++| ..++.+-|+||++++
T Consensus 195 siadvGLVG~PNAGKSTLL~als-~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALS-RAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVADIPGIIEG 257 (366)
T ss_pred eecccceecCCCCcHHHHHHHhh-ccCCcccccceeeeccccceeeccc----------------cceeEeccCcccccc
Confidence 34679999999999999999999 8889999999999999999998887 567999999999999
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
+|.+++++-+||+|+++|+.+++|||++.... ..|..++..+..|+.+ +
T Consensus 258 Ah~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~------------y------------ 306 (366)
T KOG1489|consen 258 AHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELEL------------Y------------ 306 (366)
T ss_pred ccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHH------------H------------
Confidence 99999999999999999999999999976532 3455555554443221 0
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
+ .-++.+|.++|+||.| .+++ .+..++++.+..+ +..+
T Consensus 307 ----------------e---------------------k~L~~rp~liVaNKiD--~~ea-e~~~l~~L~~~lq--~~~V 344 (366)
T KOG1489|consen 307 ----------------E---------------------KGLADRPALIVANKID--LPEA-EKNLLSSLAKRLQ--NPHV 344 (366)
T ss_pred ----------------h---------------------hhhccCceEEEEeccC--chhH-HHHHHHHHHHHcC--CCcE
Confidence 0 1247999999999985 4333 1233455554433 2349
Q ss_pred EEechhhhHHhcCC
Q 012870 295 VTISAQVEAELTEL 308 (454)
Q Consensus 295 v~iSA~~E~~l~~l 308 (454)
+++||+.+.++.+|
T Consensus 345 ~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 345 VPVSAKSGEGLEEL 358 (366)
T ss_pred EEeeeccccchHHH
Confidence 99999998766443
No 18
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3e-23 Score=218.72 Aligned_cols=174 Identities=32% Similarity=0.480 Sum_probs=128.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+|||+||||||||+|+|+ ...+.++++||||++|+.+.+.+.+ .++.++||||++++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls-~akpkIadypfTTl~P~lGvv~~~~-----------------~~f~laDtPGlieg 219 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALS-AAKPKIADYPFTTLVPNLGVVQAGD-----------------TRFTVADVPGLIPG 219 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHh-cCCccccccCcccccceEEEEEECC-----------------eEEEEEECCCCccc
Confidence 34689999999999999999999 5677889999999999999998874 46999999999999
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
++.+.+++..|+.++++||+|+||||+++.. ...||+.++..+.+||......
T Consensus 220 as~g~gLg~~fLrhieradvLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~~--------------------- 272 (500)
T PRK12296 220 ASEGKGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAPA--------------------- 272 (500)
T ss_pred cchhhHHHHHHHHHHHhcCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhhc---------------------
Confidence 9888889999999999999999999987521 1235666666655443211100
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
+.. + ..+..+..+|+++|+||.| +++. ....+.+++...+.+.++
T Consensus 273 ---------------l~~-----~-----------~~~~~l~~kP~IVVlNKiD--L~da--~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 273 ---------------LDG-----D-----------LGLGDLAERPRLVVLNKID--VPDA--RELAEFVRPELEARGWPV 317 (500)
T ss_pred ---------------ccc-----c-----------chhhhhcCCCEEEEEECcc--chhh--HHHHHHHHHHHHHcCCeE
Confidence 000 0 0011235799999999984 4433 233344444444557889
Q ss_pred EEechhhhHHhcCC
Q 012870 295 VTISAQVEAELTEL 308 (454)
Q Consensus 295 v~iSA~~E~~l~~l 308 (454)
+++||+...+|.+|
T Consensus 318 f~ISA~tgeGLdEL 331 (500)
T PRK12296 318 FEVSAASREGLREL 331 (500)
T ss_pred EEEECCCCCCHHHH
Confidence 99999988777555
No 19
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.90 E-value=7.4e-24 Score=201.38 Aligned_cols=263 Identities=22% Similarity=0.295 Sum_probs=187.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|+|++|||||++.|+ +...+++.+-|||...+.|+..+. ++++++.|.||+++++.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~-g~~s~vasyefttl~~vpG~~~y~-----------------gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT-GTFSEVAAYEFTTLTTVPGVIRYK-----------------GAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc-CCCCccccccceeEEEecceEecc-----------------ccceeeecCcchhcccc
Confidence 589999999999999999999 667889999999999999998777 46799999999999999
Q ss_pred cccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccch
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE 216 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~~ 216 (454)
.+.+.+.+.+...|.|.+|++|+|+ ..|+....++++||.-..+..-.....-..+....+.++.+
T Consensus 122 dgkgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt-- 187 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLT-- 187 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeee--
Confidence 9999999999999999999999997 45777778888876533322111100000000011222221
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCC-----CCCHHH-HHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhc
Q 012870 217 DAEKAALEKIQQALMDGKPARSV-----TLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (454)
Q Consensus 217 ~~~~~ll~~i~~~L~~~~~~~~~-----~lt~ee-~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~ 290 (454)
+..--++.+...+.+.+..... +-|.++ ...+. +.+.+-|.+|++|+.+. .+++++.-...
T Consensus 188 -~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVe--gnr~yVp~iyvLNkIds--------ISiEELdii~~-- 254 (358)
T KOG1487|consen 188 -GTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVE--GNRIYVPCIYVLNKIDS--------ISIEELDIIYT-- 254 (358)
T ss_pred -cchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhc--cCceeeeeeeeecccce--------eeeeccceeee--
Confidence 1112345566666666544432 223221 22221 33578899999999853 22333432211
Q ss_pred CCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCe----eeEEec-CCCCHHHH
Q 012870 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET----KAWTIR-AGMTAPQA 365 (454)
Q Consensus 291 ~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~----raw~i~-~Gsta~~a 365 (454)
-...+|+||..++++ +.+++.+++.|+|.++||..++.. .+-.++ .-+|+.|+
T Consensus 255 iphavpISA~~~wn~----------------------d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~df 312 (358)
T KOG1487|consen 255 IPHAVPISAHTGWNF----------------------DKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDF 312 (358)
T ss_pred ccceeecccccccch----------------------HHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHH
Confidence 234799999988765 678889999999999999986653 344444 55899999
Q ss_pred hhhhchhhhhCceEEEEeehh
Q 012870 366 AGVIHSDFEKGFIRAETVAYD 386 (454)
Q Consensus 366 Ag~IHsD~~kgFi~AeV~~~~ 386 (454)
|.+||+++.+.|.+|-||+..
T Consensus 313 c~~ih~~~~~~fk~alvwg~s 333 (358)
T KOG1487|consen 313 CNKIHKSILKQFKYALVWGSS 333 (358)
T ss_pred HHHHHHHHHHhhhhheEeccc
Confidence 999999999999999999875
No 20
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.1e-23 Score=215.06 Aligned_cols=188 Identities=28% Similarity=0.355 Sum_probs=131.8
Q ss_pred ccccccccccccccCCCCCCchhhhhhhccccCCCCCCcch----hh--------------------hhhhhhccccCCc
Q 012870 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS----SR--------------------RRFSSASKISMSL 57 (454)
Q Consensus 2 v~lA~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~g~~~~~----~~--------------------~~~~~~~~~~~~~ 57 (454)
||||+|+|.+|++.+.+..+ ++.++++|.+||++.. ++ ...+..|.....+
T Consensus 116 v~la~l~~~l~r~~~~~~~l-----~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~ 190 (351)
T TIGR03156 116 VELAQLKYLLPRLVGGWTHL-----SRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVP 190 (351)
T ss_pred HHHHhccchhhhhhhhHHHH-----HhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 79999999999998866544 5678889999988721 11 1122233334569
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+|||+||||||||+|+|++.. +.++++||+|+||....+.+++ +.++.||||||+++..+.
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~----------------~~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPD----------------GGEVLLTDTVGFIRDLPH 253 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCC----------------CceEEEEecCcccccCCH
Confidence 99999999999999999999554 7789999999999999998865 346999999999764332
Q ss_pred cccccc---ccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 138 GEGLGN---KFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 138 ~~~l~~---~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.+.+ ..+..+++||++++|+|++++. +++.+.|+.|...+ ..
T Consensus 254 --~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-------------~~ 318 (351)
T TIGR03156 254 --ELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-------------PR 318 (351)
T ss_pred --HHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-------------Hh
Confidence 1223 3356688999999999998642 23444455553221 11
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
+.. .. ....+...+||+++.|++++++.+.+.
T Consensus 319 v~~-~~--~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 IER-LE--EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHH-HH--hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 111 00 011112348999999999999888654
No 21
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=7.3e-23 Score=212.96 Aligned_cols=91 Identities=45% Similarity=0.754 Sum_probs=82.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
...|+|||+||||||||+|+|+ +..+.++++||||++|+.+.+.+++ ..++.++||||+..++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt-~ak~kIa~ypfTTl~PnlG~v~~~~----------------~~~~~laD~PGliega 220 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVS-NAKPKIANYHFTTLVPNLGVVETDD----------------GRSFVMADIPGLIEGA 220 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHH-cCCCccccCCcceeceEEEEEEEeC----------------CceEEEEECCCCcccc
Confidence 3589999999999999999999 6667889999999999999988764 2469999999999988
Q ss_pred CcccccccccccchhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.+.+++..|+.+++++|+++||+|+++
T Consensus 221 ~~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 221 SEGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred cccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 8888899999999999999999999864
No 22
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=4e-23 Score=203.88 Aligned_cols=186 Identities=23% Similarity=0.160 Sum_probs=138.7
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|+||||||||+|+|+|...+.++++|+||+++..+....+ ..++.||||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-----------------~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-----------------ASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-----------------CcEEEEEECcCCCCCcch
Confidence 699999999999999999998888889999999999887776544 357999999999765332
Q ss_pred -ccccccccccchhccceEEEEEeccCCc---------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHH
Q 012870 138 -GEGLGNKFLSHIREVDSILQVVRCFEDN---------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK 201 (454)
Q Consensus 138 -~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~ 201 (454)
.+.+...+...+++||++++|+|+++.. +++.+.|+.|....- . +...+..
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~-~------------~~~~~~~ 131 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKD-K------------LLPLIDK 131 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHH-H------------HHHHHHH
Confidence 2223344567789999999999987632 345566666654211 1 1111122
Q ss_pred HHhcc---cCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HHHHHH-HHhhhccCcEEEEEecccccc
Q 012870 202 LKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDL 271 (454)
Q Consensus 202 ~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~e~lr-~~~~lt~kpi~~v~N~~~~d~ 271 (454)
+.... +..++||++|.|++++++.+.+.+++++++++. .+|+. ..|++| +++..+.+++||.+.+..+.+
T Consensus 132 ~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~ 211 (270)
T TIGR00436 132 YAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERK 211 (270)
T ss_pred HHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEE
Confidence 21111 234599999999999999999999999998886 34544 588888 778899999999999987766
Q ss_pred CC
Q 012870 272 AD 273 (454)
Q Consensus 272 ~~ 273 (454)
.+
T Consensus 212 ~~ 213 (270)
T TIGR00436 212 SF 213 (270)
T ss_pred EE
Confidence 43
No 23
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.89 E-value=1.1e-22 Score=196.80 Aligned_cols=225 Identities=25% Similarity=0.360 Sum_probs=146.4
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.||+|||||+|+|+| ....++++||+|.++..|.+.+++ .++++|||||+.+....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg-~~~~v~~~~~tT~~~~~g~~~~~~-----------------~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN-TKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCccccCCCCccccceEEEEEECC-----------------eEEEEEECCCccccccc
Confidence 799999999999999999994 456789999999999999988764 57999999999887765
Q ss_pred ccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcc-cCCCcccc-c
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK-AKDSQSKL-K 215 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~-~~~~vSak-~ 215 (454)
..++..+++..++++|++++|+|+++. .++...+.+++....+. +.+....+.-.. ..+.++.. +
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~------------~~~~~~~~~~l~~~gi~-l~~~~~~v~~~~~~~ggi~~~~~ 130 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKP------------EGHREILERELEGVGIR-LNKRPPNITIKKKKKGGINITST 130 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcc------------hhHHHHHHHHHHHcCce-ecCCCCeEEEEEEecCCEEEecc
Confidence 556777888899999999999998642 22344444444322220 111110000000 01112110 1
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCC-----CCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhc
Q 012870 216 EDAEKAALEKIQQALMDGKPARSV-----TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~-----~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~ 290 (454)
+.....-.+.+.+.|.+.+...+. +.|-++.+-.- +..+.+.|+++|+||.| ... .++++.+++.
T Consensus 131 ~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~-~~~~~y~p~iiV~NK~D--l~~------~~~~~~~~~~- 200 (233)
T cd01896 131 VPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVI-EGNRVYIPCLYVYNKID--LIS------IEELDLLARQ- 200 (233)
T ss_pred CCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHH-hCCceEeeEEEEEECcc--CCC------HHHHHHHhcC-
Confidence 111112235666677766654442 34433221111 23468899999999985 322 2334445443
Q ss_pred CCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecC
Q 012870 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (454)
Q Consensus 291 ~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~ 346 (454)
.+++++||+.. .|++++.+.+++.|++|++||+
T Consensus 201 -~~~~~~SA~~g----------------------~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 201 -PNSVVISAEKG----------------------LNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred -CCEEEEcCCCC----------------------CCHHHHHHHHHHHhCcEEEecC
Confidence 35889998764 4678889999999999999995
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=9.4e-23 Score=210.73 Aligned_cols=158 Identities=28% Similarity=0.431 Sum_probs=121.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
..|||||+||||||||+|+|+ +..+.++++||||+.|+.+.+..++ ..++.|+||||+.++++
T Consensus 160 adValVG~PNaGKSTLln~Lt-~~k~~vs~~p~TT~~p~~Giv~~~~----------------~~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVS-AAKPKVADYPFTTLVPNLGVVRVDD----------------ERSFVVADIPGLIEGAS 222 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHh-CCcccccCCCCCccCcEEEEEEeCC----------------CcEEEEEeCCCcccccc
Confidence 479999999999999999999 5567999999999999999998875 23599999999999888
Q ss_pred cccccccccccchhccceEEEEEeccC---C----------------------cceEEecCccCCCChhHHHhHhhhccc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE---D----------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~---~----------------------~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
.+.+++.+|+.+++++|++++|+|++. . .+++.+.|+.|....
T Consensus 223 ~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------------ 290 (390)
T PRK12298 223 EGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE------------ 290 (390)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh------------
Confidence 877899999999999999999999872 1 123444555554321
Q ss_pred HHHHHHHHHHHHhcc----cCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH
Q 012870 192 LDQIEKRMEKLKKGK----AKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF 244 (454)
Q Consensus 192 ~~~l~~~~~~~~~~~----~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e 244 (454)
+.+...+..+.+.. +..++||+++.++.++++.+.+.+++++++++. .+|+.
T Consensus 291 -~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~ 347 (390)
T PRK12298 291 -EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPE 347 (390)
T ss_pred -HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCc
Confidence 11122222222211 223589999999999999999999999888875 45544
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.6e-22 Score=205.28 Aligned_cols=91 Identities=46% Similarity=0.782 Sum_probs=82.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
...|+|||+||||||||+|+|+ ...+.++++||||++|+.+.+.+++ ..++.+|||||+++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls-~a~~~va~ypfTT~~p~~G~v~~~~----------------~~~~~i~D~PGli~ga 220 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLHPNLGVVRVDD----------------YKSFVIADIPGLIEGA 220 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHH-cCCCccCCCCCceeCceEEEEEeCC----------------CcEEEEEeCCCccCCC
Confidence 4679999999999999999999 5667899999999999999998854 3469999999999999
Q ss_pred CcccccccccccchhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.+.+++.+|++++++||+++||+|+++
T Consensus 221 ~~~~gLg~~flrhie~a~vlI~ViD~s~ 248 (335)
T PRK12299 221 SEGAGLGHRFLKHIERTRLLLHLVDIEA 248 (335)
T ss_pred CccccHHHHHHHHhhhcCEEEEEEcCCC
Confidence 9888899999999999999999999864
No 26
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=1.1e-21 Score=198.77 Aligned_cols=91 Identities=45% Similarity=0.783 Sum_probs=82.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
...|+|||+||||||||+|+|+ .....++++||||+.|+.+.+.+++ ..++.++||||+.+++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt-~~~~~va~y~fTT~~p~ig~v~~~~----------------~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVIADIPGLIEGA 219 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHh-cCCccccCCCCCccCCEEEEEEeCC----------------ceEEEEEeCCCcccCC
Confidence 4679999999999999999999 5667899999999999999998764 2569999999999998
Q ss_pred CcccccccccccchhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.+.+++..|++++++||++++|+|+++
T Consensus 220 ~~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 220 SEGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred cccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 8888899999999999999999999864
No 27
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=1.6e-21 Score=198.45 Aligned_cols=191 Identities=20% Similarity=0.218 Sum_probs=140.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+++|.||||||||+|+|+|...+.+++.|+||++...+.+..++ .++.||||||+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-----------------~qi~~~DTpG~~~~ 113 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-----------------TQVILYDTPGIFEP 113 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-----------------eEEEEEECCCcCCC
Confidence 3469999999999999999999988888899999999998888887764 57999999999654
Q ss_pred CCc-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 135 ASQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
.+. ...+.+.....+++||++++|+|+.+. .+.+.+.|+.|.... . ...+.+
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--~---------~~~~~~ 182 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--Y---------LNDIKA 182 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--c---------HHHHHH
Confidence 322 223344445668899999999998652 123345556553211 0 011111
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HHHHHH-HHhhhccCcEEEEEeccccc
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESD 270 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~e~lr-~~~~lt~kpi~~v~N~~~~d 270 (454)
.+..........++||++|.|++++++.+.+.+++++|+|+. .+||. ..|++| +++..+.+++||.+.+..+.
T Consensus 183 ~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~ 262 (339)
T PRK15494 183 FLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEK 262 (339)
T ss_pred HHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEE
Confidence 111111111234599999999999999999999999999986 45655 588899 88889999999999998776
Q ss_pred cCC
Q 012870 271 LAD 273 (454)
Q Consensus 271 ~~~ 273 (454)
+.+
T Consensus 263 ~~~ 265 (339)
T PRK15494 263 WED 265 (339)
T ss_pred EEE
Confidence 653
No 28
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=2e-20 Score=186.28 Aligned_cols=187 Identities=28% Similarity=0.317 Sum_probs=139.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
..|+|+|.||||||||+|+|+|...+.+++.|.||++...+....+ ..++.|+||||+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-----------------~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-----------------DAQIIFVDTPGIHKPKR 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-----------------CceEEEEECCCCCCchh
Confidence 4699999999999999999998888899999999998888776543 25799999999976543
Q ss_pred c-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 137 ~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
. ++.+.......+.++|++++|+|+++. .+++.+.|+.|...+... +...+
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~------------l~~~~ 136 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEE------------LLPLL 136 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHH------------HHHHH
Confidence 2 222333445667899999999999761 245566677775532222 22223
Q ss_pred HHHHhcc---cCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HHHHHH-HHhhhccCcEEEEEecccc
Q 012870 200 EKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (454)
Q Consensus 200 ~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~e~lr-~~~~lt~kpi~~v~N~~~~ 269 (454)
+.+.... +..++||+++.|+.++++.+.+.+++++++++. .+|+. ..|++| +++..+.+++||.+.+..+
T Consensus 137 ~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~ 216 (292)
T PRK00089 137 EELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIE 216 (292)
T ss_pred HHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEE
Confidence 3333222 223589999999999999999999999998885 34443 577888 7778899999999999876
Q ss_pred ccC
Q 012870 270 DLA 272 (454)
Q Consensus 270 d~~ 272 (454)
.+.
T Consensus 217 ~~~ 219 (292)
T PRK00089 217 KFE 219 (292)
T ss_pred EEE
Confidence 664
No 29
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=5.7e-21 Score=173.19 Aligned_cols=87 Identities=38% Similarity=0.571 Sum_probs=67.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|.||||||||||+|||.. +.++|+|++|+++..|.+.+.+ .++.++||||+..-.+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccCCC
Confidence 479999999999999999999555 8899999999999999998874 5799999999865433
Q ss_pred --cccccccccccchhccceEEEEEecc
Q 012870 137 --QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 --~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
..+.+...++. -...|++++|+|++
T Consensus 63 ~s~ee~v~~~~l~-~~~~D~ii~VvDa~ 89 (156)
T PF02421_consen 63 KSEEERVARDYLL-SEKPDLIIVVVDAT 89 (156)
T ss_dssp SSHHHHHHHHHHH-HTSSSEEEEEEEGG
T ss_pred CCcHHHHHHHHHh-hcCCCEEEEECCCC
Confidence 23444445544 36799999999984
No 30
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2.9e-20 Score=190.65 Aligned_cols=143 Identities=27% Similarity=0.262 Sum_probs=112.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC-
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA- 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~- 135 (454)
+.|+|||+||||||||||+|+|+..+.|+++||+|+|+..+.+.+.+ ..+.++||+|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~-----------------~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG-----------------REFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC-----------------ceEEEEECCCCCcCCc
Confidence 68999999999999999999999999999999999999999998874 569999999998655
Q ss_pred -CcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 136 -SQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 136 -~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
...+.+..+.+..+.+||++|+|||+.. ..+++.|.|+.|-...-...
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~--------------- 131 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELA--------------- 131 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhH---------------
Confidence 3355566788999999999999999865 24677777887754211110
Q ss_pred HHHHHhc-ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 199 MEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 199 ~~~~~~~-~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+.++-- ....++||..|.|+.+|++.+.+.|+
T Consensus 132 ~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 132 YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 1111100 11235999999999999999999984
No 31
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=7.3e-20 Score=178.11 Aligned_cols=202 Identities=19% Similarity=0.157 Sum_probs=148.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...+.||+||.||||||||.|.+.|...++++.++.||+..+.|.+..++ .|+.|+||||++.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs 132 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVS 132 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccc
Confidence 34689999999999999999999999999999999999999999998774 7899999999986
Q ss_pred CCCc-cccccc----ccccchhccceEEEEEeccCC-----------------cceEEecCccCCCChhHHHhHhhhccc
Q 012870 134 GASQ-GEGLGN----KFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 134 ~~~~-~~~l~~----~fl~~ir~aD~il~VvD~~~~-----------------~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
..+. ...+.. .....+..||+++.|+|+++. .+.+.++|++|.+.....+.+-.+...
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLT 212 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhcc
Confidence 5432 222333 334567889999999999952 134568899997766554433222222
Q ss_pred HHHHHH-HHHHHHh--ccc----------C------CCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HH
Q 012870 192 LDQIEK-RMEKLKK--GKA----------K------DSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ER 246 (454)
Q Consensus 192 ~~~l~~-~~~~~~~--~~~----------~------~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~ 246 (454)
.+.+.+ .++-.++ ..+ . ..+||++|.+++++-+.+....+.++|-++. ..|++ -.
T Consensus 213 ~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~ 292 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCS 292 (379)
T ss_pred ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHH
Confidence 222322 1111111 111 1 2389999999999999999999999999986 34544 36
Q ss_pred HHHH-HHhhhccCcEEEEEeccccccC
Q 012870 247 DSIK-QLCLLTMKPIIYVANVAESDLA 272 (454)
Q Consensus 247 e~lr-~~~~lt~kpi~~v~N~~~~d~~ 272 (454)
+++| +++-.+..++||-+.....++.
T Consensus 293 e~VReklLd~~pqEVPY~lq~~i~~w~ 319 (379)
T KOG1423|consen 293 ESVREKLLDHLPQEVPYNLQVRILSWK 319 (379)
T ss_pred HHHHHHHHhhCccccCcceEEEEEEee
Confidence 6777 6677799999999988766664
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=8.2e-20 Score=187.76 Aligned_cols=157 Identities=27% Similarity=0.318 Sum_probs=119.0
Q ss_pred hhhhhhccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeE
Q 012870 45 RRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVE 124 (454)
Q Consensus 45 ~~~~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~ 124 (454)
....+.+..+..++++|+|.||||||||+|+|++++.++|++.||||+|.....+.+. +..+.
T Consensus 206 ~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~-----------------G~pv~ 268 (454)
T COG0486 206 ATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN-----------------GIPVR 268 (454)
T ss_pred HhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC-----------------CEEEE
Confidence 4455667778899999999999999999999999999999999999999999999988 46799
Q ss_pred EEecCCccCCCCcccccc-cccccchhccceEEEEEeccCC---------------cceEEecCccCCCChhHHHhHhhh
Q 012870 125 FVDIAGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFED---------------NDIVHVNGKVDPKSDVDVINLELV 188 (454)
Q Consensus 125 lvDtpGl~~~~~~~~~l~-~~fl~~ir~aD~il~VvD~~~~---------------~~v~~v~~~~dp~~di~~l~~el~ 188 (454)
++||+|+.+....-+..| ++..+.+.+||++++|+|++++ .+++.+.|+.|.......
T Consensus 269 l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~------ 342 (454)
T COG0486 269 LVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIEL------ 342 (454)
T ss_pred EEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhccccccc------
Confidence 999999986655545554 6778889999999999999883 123445555554322210
Q ss_pred cccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 189 FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 189 l~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
... ++....+...+|+++++|++.|.+.+.+.+...
T Consensus 343 -------~~~--~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 343 -------ESE--KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -------chh--hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 100 111111123489999999999999998888654
No 33
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=1.7e-18 Score=177.59 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=114.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|||||+||||||||+|+|+|+.++.+++.|+||+|+....+..++ ..+.++||+|+-+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-----------------~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-----------------RKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-----------------eEEEEEECCCCCcc
Confidence 4699999999999999999999999999999999999999999998875 46999999999665
Q ss_pred CCccccc----ccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGL----GNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l----~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
..-.++. ..+.+..+..||++++|+|++++ ..++.+.|++|.++.-... .+.
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~--------~~~ 311 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEAT--------MEE 311 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhH--------HHH
Confidence 4322222 24557889999999999999883 3467788999977541111 111
Q ss_pred HHHHHHHHHhcc---cCCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..+.+.+.-... +...+||+++.++..+++.+.+....
T Consensus 312 ~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 312 FKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 222222211111 12338999999999999998887765
No 34
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.73 E-value=2.7e-18 Score=168.25 Aligned_cols=198 Identities=21% Similarity=0.213 Sum_probs=132.5
Q ss_pred ccccccccccccccCCCCCCchhhhhhhccccCCCCCCcc----hh-------------------hhh-hhhhccccCCc
Q 012870 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTT----SS-------------------RRR-FSSASKISMSL 57 (454)
Q Consensus 2 v~lA~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~g~~~~----~~-------------------~~~-~~~~~~~~~~~ 57 (454)
|.+|+..|..|++....+...+ ..|++ -.|.|+. +. +.. .+.++.....+
T Consensus 106 valAempy~~~rl~r~~~hl~r-----~~g~~-v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~p 179 (410)
T KOG0410|consen 106 VALAEMPYVGGRLERELQHLRR-----QSGGQ-VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSP 179 (410)
T ss_pred hhhhcCccccchHHHHHHHHHh-----cCCCc-ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCc
Confidence 6789999999999887776633 22333 3455541 11 011 22333344568
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
.|++|||+|+|||||+|+|| .......+..|.|.||+......|. +..+.+.||-||+...+.
T Consensus 180 viavVGYTNaGKsTLikaLT-~Aal~p~drLFATLDpT~h~a~Lps----------------g~~vlltDTvGFisdLP~ 242 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALT-KAALYPNDRLFATLDPTLHSAHLPS----------------GNFVLLTDTVGFISDLPI 242 (410)
T ss_pred eEEEEeecCccHHHHHHHHH-hhhcCccchhheeccchhhhccCCC----------------CcEEEEeechhhhhhCcH
Confidence 99999999999999999999 7777788999999999999998887 456999999999977664
Q ss_pred cccccccc---ccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcc--------
Q 012870 138 GEGLGNKF---LSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK-------- 206 (454)
Q Consensus 138 ~~~l~~~f---l~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~-------- 206 (454)
++...| |.++.+||+++||+|.|++..-.+ .++.....+++...+...+...++--++..
T Consensus 243 --~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q-------~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~ 313 (410)
T KOG0410|consen 243 --QLVAAFQATLEEVAEADLLLHVVDISHPNAEEQ-------RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE 313 (410)
T ss_pred --HHHHHHHHHHHHHhhcceEEEEeecCCccHHHH-------HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc
Confidence 466666 778889999999999988642111 111222222233333333332222111111
Q ss_pred -c--CCCccccchHHHHHHHHHHHHhhh
Q 012870 207 -A--KDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 207 -~--~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+ ..++||++|.+.+++++.+...+.
T Consensus 314 E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0 123899999999999988766654
No 35
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=1.9e-17 Score=150.06 Aligned_cols=143 Identities=38% Similarity=0.635 Sum_probs=100.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
.|++||.||||||||+|+|++ ....++.+|++|.+|+.+.+.+++ ..++.+|||||+......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~-~~~~v~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~~~~ 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVVADIPGLIEGASE 64 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc-CCccccCCCccccCCcceEEEcCC----------------CCeEEEEecCcccCcccc
Confidence 589999999999999999995 455788999999999999887654 236999999999755444
Q ss_pred ccccccccccchhccceEEEEEeccCC-c----------------------ceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED-N----------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~-~----------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.+.+...|+..++.||++++|+|+++. . +++.+.|+.|.... ..
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------------~~ 131 (170)
T cd01898 65 GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE-------------EE 131 (170)
T ss_pred cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc-------------hh
Confidence 445667788888899999999999865 1 12334444443221 11
Q ss_pred HHHHHHHH-Hh--cccCCCccccchHHHHHHHHHHHHhh
Q 012870 195 IEKRMEKL-KK--GKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 195 l~~~~~~~-~~--~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
........ .. ..+...+||+++.++.++++.+.+.|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 132 LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 11111111 11 11223489999999999998887653
No 36
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.72 E-value=5.7e-17 Score=147.40 Aligned_cols=87 Identities=59% Similarity=1.009 Sum_probs=71.5
Q ss_pred EEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCcccc
Q 012870 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (454)
Q Consensus 61 ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 140 (454)
|+|.||||||||+|+|++... .++++|++|++|+.+.+.+++ +.++.+|||||+.......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPD----------------GARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCC----------------CCeEEEEeccccchhhhcCCC
Confidence 589999999999999996544 788999999999998877662 246899999999765555555
Q ss_pred cccccccchhccceEEEEEeccCC
Q 012870 141 LGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 141 l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
+...|+..++.+|++++|+|+++.
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~ 87 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASED 87 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccCC
Confidence 666788888999999999998653
No 37
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.7e-17 Score=174.64 Aligned_cols=165 Identities=23% Similarity=0.328 Sum_probs=121.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC--
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK-- 133 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~-- 133 (454)
..+||++|.||||||||||+|| +....++|+||+|++-..|.+...+ .++.++|+||...
T Consensus 3 ~~~valvGNPNvGKTtlFN~LT-G~~q~VgNwpGvTVEkkeg~~~~~~-----------------~~i~ivDLPG~YSL~ 64 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALT-GANQKVGNWPGVTVEKKEGKLKYKG-----------------HEIEIVDLPGTYSLT 64 (653)
T ss_pred cceEEEecCCCccHHHHHHHHh-ccCceecCCCCeeEEEEEEEEEecC-----------------ceEEEEeCCCcCCCC
Confidence 3579999999999999999999 6789999999999999999998875 4699999999953
Q ss_pred CCCcccccccccccchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
..+.+|....+|+.. .++|+++.|+|+++ +.+++.+.|..|..+. +-...|.+.+++.+
T Consensus 65 ~~S~DE~Var~~ll~-~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~------~Gi~ID~~~L~~~L 137 (653)
T COG0370 65 AYSEDEKVARDFLLE-GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKK------RGIRIDIEKLSKLL 137 (653)
T ss_pred CCCchHHHHHHHHhc-CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHh------cCCcccHHHHHHHh
Confidence 446677777888763 46899999999987 3456777777664322 12233444445443
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK 250 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr 250 (454)
. .+-.++||++|.|++++++.+.+..+.+...+...+.++-.+.++
T Consensus 138 G-----vPVv~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i~ 183 (653)
T COG0370 138 G-----VPVVPTVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIK 183 (653)
T ss_pred C-----CCEEEEEeecCCCHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence 1 123458999999999999999888877654222355555334443
No 38
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=3.7e-17 Score=172.38 Aligned_cols=148 Identities=23% Similarity=0.303 Sum_probs=104.0
Q ss_pred hccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 50 ~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
.+.....++|+++|+||||||||+|+|++...+.+++.|++|+++....+.+++ ..+.+||||
T Consensus 209 ~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~i~l~DT~ 271 (449)
T PRK05291 209 GEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-----------------IPLRLIDTA 271 (449)
T ss_pred HHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-----------------eEEEEEeCC
Confidence 344456789999999999999999999987777899999999999988887753 468999999
Q ss_pred CccCCCCcccccc-cccccchhccceEEEEEeccCCc--------------ceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 130 GLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDN--------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 130 Gl~~~~~~~~~l~-~~fl~~ir~aD~il~VvD~~~~~--------------~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
|+.......+..+ .+.+..+++||++++|+|++++. +++.+.|+.|..... .
T Consensus 272 G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~-------------~ 338 (449)
T PRK05291 272 GIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEI-------------D 338 (449)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccc-------------h
Confidence 9964332211111 23466789999999999997642 233344444422110 0
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.. .....+...+||+++.|++++++.+.+.+..
T Consensus 339 ~~-----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 339 LE-----EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred hh-----hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 00 0001112348999999999999999888764
No 39
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=2e-16 Score=135.79 Aligned_cols=88 Identities=38% Similarity=0.494 Sum_probs=73.6
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+|+|.||||||||+|+|++...+.+++.|++|+++..+.+.+++ ..+.|+||||+..+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN-----------------KKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT-----------------EEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece-----------------eeEEEEeCCCCcccchh
Confidence 6999999999999999999976788999999999999887777753 56899999999876544
Q ss_pred cc--ccccccccchhccceEEEEEecc
Q 012870 138 GE--GLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 138 ~~--~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. .....+++.++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~ 90 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDAS 90 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECC
Confidence 32 23456888889999999999963
No 40
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.5e-16 Score=160.86 Aligned_cols=95 Identities=32% Similarity=0.430 Sum_probs=80.2
Q ss_pred hccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 50 ~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
....+.+++|+|+|+||||||||+|+|+..+++.|++.||||+|.....+++. +.++.++||+
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~-----------------G~~v~L~DTA 324 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN-----------------GVPVRLSDTA 324 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC-----------------CeEEEEEecc
Confidence 34455679999999999999999999999999999999999999999999876 4679999999
Q ss_pred CccCCC-Ccccccc-cccccchhccceEEEEEec
Q 012870 130 GLVKGA-SQGEGLG-NKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 130 Gl~~~~-~~~~~l~-~~fl~~ir~aD~il~VvD~ 161 (454)
|+.+.. ...+.++ ++....+++||++++|+|+
T Consensus 325 GiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 325 GIREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred ccccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 998733 3333443 5556678999999999998
No 41
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=2.3e-15 Score=148.77 Aligned_cols=91 Identities=24% Similarity=0.334 Sum_probs=71.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+.|.|.|+||||||||+++|| .+...+++|||||...+.|.+..+. ..++++||||+.+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT-~AkpEvA~YPFTTK~i~vGhfe~~~-----------------~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT-TAKPEVAPYPFTTKGIHVGHFERGY-----------------LRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh-cCCCccCCCCccccceeEeeeecCC-----------------ceEEEecCCcccCC
Confidence 45799999999999999999999 8899999999999999999998874 45999999999753
Q ss_pred CC-cccccccccccchh-ccceEEEEEeccC
Q 012870 135 AS-QGEGLGNKFLSHIR-EVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~-~~~~l~~~fl~~ir-~aD~il~VvD~~~ 163 (454)
.- +-..+..+....++ =+++|+|++|.|.
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se 259 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSE 259 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc
Confidence 22 11112223322233 2578999999886
No 42
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.61 E-value=5.5e-15 Score=155.46 Aligned_cols=96 Identities=28% Similarity=0.416 Sum_probs=76.7
Q ss_pred ccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 51 ~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
+..+..++|+|+|.||||||||+|+|++...+.++++|+||+++..+.+.+++ .++.+|||||
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-----------------~~v~l~DTaG 260 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-----------------ILIKLLDTAG 260 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-----------------EEEEEeeCCC
Confidence 55567799999999999999999999977778899999999999988887763 5689999999
Q ss_pred ccCCCCcccccc-cccccchhccceEEEEEeccC
Q 012870 131 LVKGASQGEGLG-NKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 131 l~~~~~~~~~l~-~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.......+..+ .+....+++||++++|+|+++
T Consensus 261 ~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~ 294 (442)
T TIGR00450 261 IREHADFVERLGIEKSFKAIKQADLVIYVLDASQ 294 (442)
T ss_pred cccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 965332212121 344567889999999999853
No 43
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=1.8e-14 Score=130.49 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=62.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||||||||+|+|++ ....++++|++|.++..+.+..+ ..++.+|||||+.....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~-~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTR-AKPEVAPYPFTTKSLFVGHFDYK-----------------YLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhc-CCCccCCCCCcccceeEEEEccC-----------------ceEEEEEECCCcCCccc
Confidence 4799999999999999999995 44567788999999888776554 25699999999854321
Q ss_pred ccc-ccccccccch-hccceEEEEEeccC
Q 012870 137 QGE-GLGNKFLSHI-REVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~-~l~~~fl~~i-r~aD~il~VvD~~~ 163 (454)
... .+....+..+ ..+|++++|+|+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~ 91 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSE 91 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCc
Confidence 111 0101111111 23689999999854
No 44
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=4.7e-15 Score=157.56 Aligned_cols=147 Identities=22% Similarity=0.207 Sum_probs=104.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|||.||||||||+|+|++...+.+++.|++|++...+.+.+.+ .++.+|||||+...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 99 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-----------------RRFTVVDTGGWEPD 99 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-----------------cEEEEEeCCCcCCc
Confidence 4479999999999999999999977778889999999998888877653 46899999998632
Q ss_pred CCc-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 135 ASQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
... ...+.......+++||++++|+|+++. .+++.|.|+.|....- .+ ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~----~~--------~~~ 167 (472)
T PRK03003 100 AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE----AD--------AAA 167 (472)
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc----hh--------hHH
Confidence 211 112233445568899999999999862 3577788888853210 00 000
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.. .. ......++||++|.|+.++++.+.+.+++
T Consensus 168 ~~-~~-g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 168 LW-SL-GLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred HH-hc-CCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 00 00 00011349999999999999999988865
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1.9e-14 Score=152.98 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=105.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||||||||+|+|++...+.+++.|+||+++....+.+.+ .++.+|||||+.+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-----------------~~~~l~DTaG~~~~ 272 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-----------------KTWRFVDTAGLRRR 272 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-----------------EEEEEEECCCcccc
Confidence 4589999999999999999999977777899999999999888887763 45889999999654
Q ss_pred CCccccccccc------ccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccH
Q 012870 135 ASQGEGLGNKF------LSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 135 ~~~~~~l~~~f------l~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
.... .+..+ ...++.||++++|+|+++. .+++.+.|+.|....-..
T Consensus 273 ~~~~--~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~---------- 340 (472)
T PRK03003 273 VKQA--SGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRR---------- 340 (472)
T ss_pred cccc--chHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHH----------
Confidence 3321 11111 2357899999999998763 246677788876431100
Q ss_pred HHHHHHHH-HHHh--cccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 193 DQIEKRME-KLKK--GKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 193 ~~l~~~~~-~~~~--~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
..+...+. .+.. ..+...+||++|.|+.++++.+.+.++..
T Consensus 341 ~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 341 YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 00111111 1111 11223489999999999999999988753
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=4.3e-15 Score=155.61 Aligned_cols=144 Identities=26% Similarity=0.266 Sum_probs=104.2
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+|||.||||||||+|+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-----------------~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-----------------REFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-----------------eEEEEEECCCCCCcchh
Confidence 5899999999999999999988878899999999999999887764 46999999998543211
Q ss_pred -ccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHH
Q 012870 138 -GEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (454)
Q Consensus 138 -~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~ 200 (454)
.+.+..+....+++||++++|+|+.+ ..+++.+.|+.|-...-... .. ..
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~------------~~-~~ 130 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA------------AE-FY 130 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH------------HH-HH
Confidence 12334556677899999999999875 23466777777743211100 00 00
Q ss_pred HHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 201 ~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+ ...+..++||+.|.++.++++.+.+.++.
T Consensus 131 ~l-g~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 131 SL-GFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred hc-CCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 11 00112348999999999999999988865
No 47
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.57 E-value=9.6e-15 Score=137.40 Aligned_cols=142 Identities=30% Similarity=0.432 Sum_probs=95.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+|+|.||||||||+|+|++ ....+.+.+++|.++..+.+.+++ ..++.+|||||+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~i~Dt~G~~~ 101 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTG-ADVYAEDQLFATLDPTTRRLRLPD----------------GREVLLTDTVGFIR 101 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhc-chhccCCccceeccceeEEEEecC----------------CceEEEeCCCcccc
Confidence 4568999999999999999999995 445677888999999888776654 13699999999965
Q ss_pred CCCccccccccc---ccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcc
Q 012870 134 GASQGEGLGNKF---LSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 134 ~~~~~~~l~~~f---l~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
..+.. +...+ +..++.+|++++|+|+++.. +++.+.|+.|....-.
T Consensus 102 ~~~~~--~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~--------- 170 (204)
T cd01878 102 DLPHQ--LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE--------- 170 (204)
T ss_pred CCCHH--HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---------
Confidence 43321 22222 34467899999999987632 2344445555332211
Q ss_pred cHHHHHHHHHHHHhc-ccCCCccccchHHHHHHHHHHHHhh
Q 012870 191 DLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 191 d~~~l~~~~~~~~~~-~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.. ...... .+...+||+++.|+.++++.+.+.|
T Consensus 171 ----~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 171 ----LE---ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ----HH---HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 11 111111 1123489999999999998876653
No 48
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.57 E-value=1.8e-14 Score=150.94 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=107.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||+|||||+|+|++.....+++.|+||+++....+...+ ..+.+|||||+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~liDT~G~~~~ 233 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-----------------KKYLLIDTAGIRRK 233 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-----------------cEEEEEECCCcccc
Confidence 4579999999999999999999988888899999999999888776653 45899999999765
Q ss_pred CCcccccc----cccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~----~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
....+.+. .+.+..++.||++++|+|+++. .+++.+.|+.|.+.+-... +.
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~---------~~ 304 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTR---------EE 304 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHH---------HH
Confidence 54322221 2335678999999999998862 3466777887765211111 11
Q ss_pred HHHHHHH-HHh--cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRMEK-LKK--GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~~-~~~--~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.+.+.. +.. ..+...+||++|.|+.++++.+.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 305 FKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1111111 111 0122348999999999999998887754
No 49
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.56 E-value=5.7e-15 Score=118.09 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=54.6
Q ss_pred CeEEecCC-----------CCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeeccc
Q 012870 340 LRTYFTSG-----------EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHY 408 (454)
Q Consensus 340 li~ffT~g-----------~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~ 408 (454)
||++||+. +++.+||++++|+||+|+|++||+||+++|++|+||+ .+.+|+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 68899964 4568999999999999999999999999999999999 588999
Q ss_pred ccccc--eeeEEE
Q 012870 409 HEHLA--SYKYFH 419 (454)
Q Consensus 409 ~~~~~--~~~~~~ 419 (454)
++.++ |+.-|.
T Consensus 63 d~~l~d~DVv~i~ 75 (76)
T cd04938 63 DVILGKNDILKFK 75 (76)
T ss_pred CEEecCCCEEEEE
Confidence 99998 666554
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=3.3e-14 Score=149.32 Aligned_cols=154 Identities=23% Similarity=0.293 Sum_probs=106.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||||||||+|+|++.....+++.|++|++.....+...+ ..+.+|||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-----------------QKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-----------------eeEEEEECCCCCCC
Confidence 4689999999999999999999988888999999999998877766543 45899999999765
Q ss_pred CCcccccc----cccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~----~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.+....+. .+.+..++.||++++|+|++++ .+++.+.|+.|...+- .. +++ .+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~-~~-~~~----~~~ 308 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK-TM-EEF----KKE 308 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH-HH-HHH----HHH
Confidence 54432221 2345678899999999999863 3456677888765221 10 000 001
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+...+..+ ...+...+||+++.|+.++++.+.+....
T Consensus 309 ~~~~l~~~-~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 309 LRRRLPFL-DYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred HHHhcccc-cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11111110 01122338999999999999988877654
No 51
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.54 E-value=3.7e-14 Score=128.12 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=59.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|.||||||||+|+|+++ .......|.++.+.....+..++. ...+.+|||||......
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN-EFNLDSKSTIGVEFATRSIQIDGK---------------TIKAQIWDTAGQERYRA 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHHHHH
Confidence 69999999999999999999944 444555677776665555655532 24589999999743221
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+. ...++.+|++++|+|++
T Consensus 68 ----~~---~~~~~~~~~~i~v~d~~ 86 (165)
T cd01868 68 ----IT---SAYYRGAVGALLVYDIT 86 (165)
T ss_pred ----HH---HHHHCCCCEEEEEEECc
Confidence 11 23457899999999975
No 52
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.54 E-value=1.9e-14 Score=127.74 Aligned_cols=140 Identities=24% Similarity=0.245 Sum_probs=95.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||+|||||+|+|++...+.+++.|++|.++..+.+...+ ..+.+|||||+.....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-----------------EEEEEEECCCcCCCcc
Confidence 58999999999999999999987777788999999988877765542 4689999999865432
Q ss_pred c-ccccccccccchhccceEEEEEeccCCc--------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHH
Q 012870 137 Q-GEGLGNKFLSHIREVDSILQVVRCFEDN--------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK 201 (454)
Q Consensus 137 ~-~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~ 201 (454)
. .....+.....+.++|++++|+|+++.. +++.+.|+.|..... .. ..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~-------------~~----~~ 127 (157)
T cd04164 65 EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDS-------------EL----LS 127 (157)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcc-------------cc----cc
Confidence 2 1111234456678999999999998522 334444555432110 00 00
Q ss_pred HHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 202 LKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 202 ~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.....+...+||+++.++.++++.+.+.+
T Consensus 128 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 128 LLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 00111223489999999999998887654
No 53
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.54 E-value=1.7e-14 Score=160.40 Aligned_cols=148 Identities=20% Similarity=0.160 Sum_probs=104.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|+|+||||||||||+|+|...+.+++.|++|++...+.....+ ..+.+|||||+...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~-----------------~~~~liDT~G~~~~ 336 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-----------------TDFKLVDTGGWEAD 336 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC-----------------EEEEEEeCCCcCCC
Confidence 3478999999999999999999987778899999999998887776553 46999999998643
Q ss_pred CCc-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 135 ASQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
... ...+.++....++.||++++|+|+.+. .+++.+.|+.|....... ...
T Consensus 337 ~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------------~~~ 404 (712)
T PRK09518 337 VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------------AAE 404 (712)
T ss_pred CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------------HHH
Confidence 211 122334455668899999999998652 345667777774321100 011
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.. .+ ......++||++|.|+.++++.+.+.++..
T Consensus 405 ~~-~l-g~~~~~~iSA~~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 405 FW-KL-GLGEPYPISAMHGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred HH-Hc-CCCCeEEEECCCCCCchHHHHHHHHhcccc
Confidence 00 00 001123489999999999999999888653
No 54
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.54 E-value=1.1e-13 Score=124.30 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.||||||||+|+|++ .....+..|++|.+.....+.+++.. .++.+|||||.....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~~~- 63 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMY-DTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQERFR- 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-CCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcHHHH-
Confidence 3799999999999999999994 44455778888888888777766422 468999999964321
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
......++.+|++++|+|.+
T Consensus 64 ------~~~~~~~~~~~~ii~v~d~~ 83 (161)
T cd01861 64 ------SLIPSYIRDSSVAVVVYDIT 83 (161)
T ss_pred ------HHHHHHhccCCEEEEEEECc
Confidence 12233467899999999974
No 55
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.53 E-value=4e-14 Score=157.62 Aligned_cols=147 Identities=20% Similarity=0.293 Sum_probs=100.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..+|+++|.||||||||||+|+| ....++|+|++|++...+.+..++ .++.+|||||+....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg-~~~~vgn~pGvTve~k~g~~~~~~-----------------~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG-ARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC-CCCccCCCCCceEeeEEEEEEcCc-----------------eEEEEEECCCccccc
Confidence 46899999999999999999995 456899999999999999887653 569999999996543
Q ss_pred Cc------ccccccccccchhccceEEEEEeccCC--------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 136 SQ------GEGLGNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 136 ~~------~~~l~~~fl~~ir~aD~il~VvD~~~~--------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
.. ++.+...++. ..++|++++|+|+++. .+++.+.|+.|..+.... ..+.+.+
T Consensus 65 ~~~~~~s~~E~i~~~~l~-~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i------~id~~~L 137 (772)
T PRK09554 65 TISSQTSLDEQIACHYIL-SGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNI------RIDIDAL 137 (772)
T ss_pred cccccccHHHHHHHHHHh-ccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCc------HHHHHHH
Confidence 21 2222222221 2479999999999862 345666777774321110 0011111
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
++.+ . .+..++||+++.|++++.+.+.+..+.
T Consensus 138 ~~~L---G--~pVvpiSA~~g~GIdeL~~~I~~~~~~ 169 (772)
T PRK09554 138 SARL---G--CPVIPLVSTRGRGIEALKLAIDRHQAN 169 (772)
T ss_pred HHHh---C--CCEEEEEeecCCCHHHHHHHHHHhhhc
Confidence 1111 1 123458999999999999999887653
No 56
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.53 E-value=4.9e-14 Score=126.39 Aligned_cols=143 Identities=19% Similarity=0.184 Sum_probs=86.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCc--cccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~--~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
|.|+++|.||||||||+|+|+|... ......+++|.+.....+.+++ ..++.+|||||..+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~~~- 63 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGHEK- 63 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCChHH-
Confidence 4699999999999999999996432 2223356778777666655542 24699999999732
Q ss_pred CCcccccccccccchhccceEEEEEeccCC-----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~-----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
+.......++.||++++|+|+.+. .+++.+.|+.|...... ... ..+.+..
T Consensus 64 ------~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~-----~~~~~~~ 131 (164)
T cd04171 64 ------FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LEL-----VEEEIRE 131 (164)
T ss_pred ------HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-HHH-----HHHHHHH
Confidence 223344557889999999998651 13445556665432110 000 0001111
Q ss_pred HHHHHH-hcccCCCccccchHHHHHHHHHHHH
Q 012870 198 RMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 198 ~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+.... ...+..++||+++.|+.++++.+.+
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 132 LLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 111100 0112334899999999998887653
No 57
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.53 E-value=8.9e-14 Score=125.16 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=96.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||+|||||+|+|++......++.|++|++.....+...+ ..+.+|||||+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-----------------eeEEEEECCCCcccc
Confidence 478999999999999999999976667788899999888777666543 358899999997554
Q ss_pred Ccccccc----cccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 136 SQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 136 ~~~~~l~----~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
+....+. ...+..++.+|++++|+|+.++ .+++.+.|+.|....-. ...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-----------~~~ 133 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS-----------KTM 133 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH-----------HHH
Confidence 3222221 2234556789999999998763 23455556665432210 011
Q ss_pred HHHHHHHHhc------ccCCCccccchHHHHHHHHHHHHh
Q 012870 196 EKRMEKLKKG------KAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 196 ~~~~~~~~~~------~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
......+... .+..++||+++.|+.++++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 134 KEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 1111112111 122347999999999888877654
No 58
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.53 E-value=1.4e-13 Score=129.97 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+|+|.||||||||+|+++++. ......|.++.+.....+.+++. ...+.+|||||+.+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGR---------------VYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCE---------------EEEEEEEeCCCcccCCc
Confidence 489999999999999999999543 33334555554433333444432 14588999999864321
Q ss_pred c-ccccccccccchhccceEEEEEeccC
Q 012870 137 Q-GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~-~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. +..........++.||++++|+|+++
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~ 92 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICS 92 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCC
Confidence 1 11111122345789999999999753
No 59
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.53 E-value=4.6e-14 Score=156.89 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=105.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||||||||+|+|++.....++++|+||+++....+.+++ .++.+|||||+.+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-----------------~~~~liDTaG~~~~ 511 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-----------------EDWLFIDTAGIKRR 511 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-----------------CEEEEEECCCcccC
Confidence 3589999999999999999999987777889999999999988877764 46889999999654
Q ss_pred CCccccc---c-cccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGL---G-NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l---~-~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.....+. . .+.+..++.||++++|+|+++. .+++.+.|+.|...+-. .+.
T Consensus 512 ~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~----------~~~ 581 (712)
T PRK09518 512 QHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR----------RQR 581 (712)
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhH----------HHH
Confidence 3321111 0 1123457899999999998763 24566777777543211 011
Q ss_pred HHHHHHH-HHh--cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRMEK-LKK--GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~~-~~~--~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+++.+.. +.. ..+..++||++|.|+.++++.+.+.++.
T Consensus 582 ~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 582 LERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred HHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1211111 111 0111348999999999999999998875
No 60
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=3.1e-14 Score=149.56 Aligned_cols=143 Identities=25% Similarity=0.215 Sum_probs=101.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+|||.||||||||+|+|++...+.+++.|++|++...+.+.+.+ .++.+|||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-----------------REFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-----------------cEEEEEECCCCCCcch
Confidence 68999999999999999999987777899999999999988887764 4699999999975222
Q ss_pred -cccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 137 -QGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 137 -~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
....+..++...+++||++++|+|+.+. .+++.+.|+.|....-.. ... .
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~------------~~~-~ 131 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEAD------------AYE-F 131 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhh------------HHH-H
Confidence 1112334456678899999999998762 346667777774321000 000 0
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
..+. .....++||++|.|+.++++.+.+.+
T Consensus 132 ~~lg-~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 132 YSLG-LGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred HhcC-CCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 0010 00123489999999999999887744
No 61
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.52 E-value=1.3e-13 Score=124.79 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=58.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|++++ ........|..+.+.....+.+++. ..++.+|||||..+...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~ 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIRTIELDGK---------------TIKLQIWDTAGQERFRT 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc-CCCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHhHHH
Confidence 6899999999999999999994 4444445555555555555544432 24689999999754322
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.....++++|++++|+|++
T Consensus 67 -------~~~~~~~~~~~ii~v~d~~ 85 (166)
T cd01869 67 -------ITSSYYRGAHGIIIVYDVT 85 (166)
T ss_pred -------HHHHHhCcCCEEEEEEECc
Confidence 1123467899999999974
No 62
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.51 E-value=6.5e-14 Score=124.67 Aligned_cols=146 Identities=34% Similarity=0.358 Sum_probs=96.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||+|||||+|+|+|...+.+++.+.+|..........+ ...+.+|||||+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD-----------------DAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC-----------------CeEEEEEECCCCCcch
Confidence 46899999999999999999998877778888888877766655433 2458999999996544
Q ss_pred Cc-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 136 ~~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
.. .+.+.......+..+|++++|+|+.+. .++..+.|+.|...+ .+.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~ 133 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------------KEDLLPL 133 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------------HHHHHHH
Confidence 32 122223345567899999999999764 123444455543311 1222222
Q ss_pred HHHHHhccc---CCCccccchHHHHHHHHHHHHhh
Q 012870 199 MEKLKKGKA---KDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 199 ~~~~~~~~~---~~~vSak~~~~~~~ll~~i~~~L 230 (454)
...+....+ ...+|++++.+++++++.+.+.|
T Consensus 134 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 134 LEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred HHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 233322221 23378999999998888876543
No 63
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=3.8e-14 Score=126.00 Aligned_cols=139 Identities=26% Similarity=0.239 Sum_probs=94.2
Q ss_pred EEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC-cc
Q 012870 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS-QG 138 (454)
Q Consensus 60 ~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~-~~ 138 (454)
+++|.||||||||+|+|++.....+++.|++|.+.....+...+ ..+.+|||||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCchhHHH
Confidence 58999999999999999976666778899999888777766543 4699999999965443 12
Q ss_pred cccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHH
Q 012870 139 EGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202 (454)
Q Consensus 139 ~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~ 202 (454)
..+.+.+...++.+|++++|+|+.+. .+++.+.|+.|....-.. ...+..+
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-------------~~~~~~~ 130 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-------------AAEFYSL 130 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-------------HHHHHhc
Confidence 22334445667899999999998652 234556666664322111 0111111
Q ss_pred HhcccCCCccccchHHHHHHHHHHHHh
Q 012870 203 KKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 203 ~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
. ..+...+|++++.+++++++.+.+.
T Consensus 131 ~-~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 131 G-FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred C-CCCeEEEecccCCCHHHHHHHHHhh
Confidence 0 0112348999999999999888764
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.51 E-value=1e-13 Score=132.11 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=61.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||++||.+|||||||+|+|++ ........|+.+.+.....+.+++.. ...+.+|||||...+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~-~~~~~~~~~T~~~d~~~~~i~~~~~~--------------~~~~~i~Dt~G~~~~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK-EGFGKSYKQTIGLDFFSKRVTLPGNL--------------NVTLQVWDIGGQSIGGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc-CCCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCcHHHHH
Confidence 4899999999999999999994 44555556766667666666665421 25689999999743222
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.. ..+++||++++|+|+++
T Consensus 66 ----l~~---~~~~~ad~iilV~D~t~ 85 (215)
T cd04109 66 ----MLD---KYIYGAHAVFLVYDVTN 85 (215)
T ss_pred ----HHH---HHhhcCCEEEEEEECCC
Confidence 222 23678999999999753
No 65
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.50 E-value=1.8e-13 Score=128.49 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=100.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCC-CCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~-~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
++|+|||.||||||||+|+|+|...+.++. .+++|.+++.+...+. +.++.++||||+....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD-----------------GRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC-----------------CeEEEEEECcCCCCcc
Confidence 379999999999999999999877665553 5678888888877665 3579999999997654
Q ss_pred Ccccc----cccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhccc
Q 012870 136 SQGEG----LGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 136 ~~~~~----l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
...+. +...+......+|++++|+|+.+.. .++.+.+..|.+.+- .+.+.+.. .
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~-~ 141 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLEN-S 141 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHh-c
Confidence 32112 2222233356789999999976511 123344444433221 11111111 1
Q ss_pred HHHHHHHHHHHHhcc-c---CCCccccchHHHHHHHHHHHHhhhC-CCCCCC
Q 012870 192 LDQIEKRMEKLKKGK-A---KDSQSKLKEDAEKAALEKIQQALMD-GKPARS 238 (454)
Q Consensus 192 ~~~l~~~~~~~~~~~-~---~~~vSak~~~~~~~ll~~i~~~L~~-~~~~~~ 238 (454)
...+...+++..... . ..+ ++..+.++.+|++.|.+.+++ +.+.|.
T Consensus 142 ~~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~ 192 (196)
T cd01852 142 CEALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYT 192 (196)
T ss_pred cHHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 122333333322221 1 112 467788999999999999987 555553
No 66
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.50 E-value=6.6e-14 Score=124.94 Aligned_cols=139 Identities=25% Similarity=0.337 Sum_probs=93.2
Q ss_pred EEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc--c
Q 012870 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--G 138 (454)
Q Consensus 61 ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~ 138 (454)
|+|.+|||||||+|++++. .+.++++|++|++.....+.++. ..+.+|||||+...... .
T Consensus 1 l~G~~~~GKssl~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA-RQKVGNWPGVTVEKKEGRFKLGG-----------------KEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC-cccccCCCCcccccceEEEeeCC-----------------eEEEEEECCCccccCCCChh
Confidence 5899999999999999954 47888999999999888877653 46899999999654322 2
Q ss_pred cccccccccchhccceEEEEEeccCCc--------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHh
Q 012870 139 EGLGNKFLSHIREVDSILQVVRCFEDN--------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (454)
Q Consensus 139 ~~l~~~fl~~ir~aD~il~VvD~~~~~--------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~ 204 (454)
..+...++.. ..+|++++|+|+.+.. +++.+.|+.|....... ......+..
T Consensus 63 ~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~-------------~~~~~~~~~ 128 (158)
T cd01879 63 EKVARDFLLG-EKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGI-------------KIDLDKLSE 128 (158)
T ss_pred HHHHHHHhcC-CCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccc-------------hhhHHHHHH
Confidence 2233444443 6899999999987632 34555566654321100 001111111
Q ss_pred c--ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 205 G--KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 205 ~--~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
. .+..++||+++.++.++++.+.+.++
T Consensus 129 ~~~~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 129 LLGVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred hhCCCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 1 12345899999999999988877643
No 67
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.49 E-value=2.8e-13 Score=123.21 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=57.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..||+++|.||||||||+|++++ ..+.....|..+.+.....+.+++. ...+.+|||||.....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~-~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE-DSFNPSFISTIGIDFKIRTIELDGK---------------KIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh-CcCCcccccCccceEEEEEEEECCE---------------EEEEEEEeCCchHHHH
Confidence 47999999999999999999994 4444444454444444444444431 1468999999974322
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. .....+++||++++|+|+.
T Consensus 67 ~-------~~~~~~~~ad~~i~v~d~~ 86 (167)
T cd01867 67 T-------ITTAYYRGAMGIILVYDIT 86 (167)
T ss_pred H-------HHHHHhCCCCEEEEEEECc
Confidence 2 1224467899999999974
No 68
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.48 E-value=3.2e-13 Score=121.25 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=55.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|++.++. . +..++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQIEVDGQ---------------QCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCchhhhEEEEEEECCE---------------EEEEEEEECCCccccch
Confidence 689999999999999999999443 2 234444444444444444432 24578999999854432
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+. -..++++|++++|+|++
T Consensus 65 ----~~---~~~~~~~~~~ilv~d~~ 83 (163)
T cd04136 65 ----MR---DLYIKNGQGFVLVYSIT 83 (163)
T ss_pred ----HH---HHHhhcCCEEEEEEECC
Confidence 11 22367899999999974
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.48 E-value=5.4e-13 Score=121.53 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=58.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|++||.||||||||+|++++. .......|..+.+.....+..... ..++.+|||||..+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~-- 65 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK-RFQPVHDLTIGVEFGARMITIDGK---------------QIKLQIWDTAGQES-- 65 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHH--
Confidence 379999999999999999999944 433333444455555555544432 24689999999642
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+.......++.+|++++|+|++
T Consensus 66 -----~~~~~~~~~~~~d~il~v~d~~ 87 (168)
T cd01866 66 -----FRSITRSYYRGAAGALLVYDIT 87 (168)
T ss_pred -----HHHHHHHHhccCCEEEEEEECC
Confidence 2222234567899999999974
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.48 E-value=3.8e-13 Score=120.91 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=56.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.||||||||+|++.+.. . ++.++.++.+.....+.+.+. ..++.+|||||..+..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 64 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY-F-VTDYDPTIEDSYTKQCEIDGQ---------------WAILDILDTAGQEEFS 64 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC-C-CcccCCCccceEEEEEEECCE---------------EEEEEEEECCCCcchh
Confidence 3699999999999999999999543 2 345555554433333333321 2468899999975432
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. +. ...++.+|++++|+|++
T Consensus 65 ~----~~---~~~~~~~~~~ilv~d~~ 84 (164)
T cd04145 65 A----MR---EQYMRTGEGFLLVFSVT 84 (164)
T ss_pred H----HH---HHHHhhCCEEEEEEECC
Confidence 2 22 23467899999999974
No 71
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.48 E-value=9.3e-13 Score=118.97 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=55.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.||||||||+++++. ... +.+++.|+.+.....+.+.+. ...+.+|||||......
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~-~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ-GIF-VEKYDPTIEDSYRKQVEVDGQ---------------QCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh-CCC-CcccCCcchheEEEEEEECCE---------------EEEEEEEECCCcccchh
Confidence 6899999999999999999993 332 344555555444334444321 13578999999854333
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+. -..++.+|++++|+|++
T Consensus 65 ----~~---~~~~~~~d~~ilv~d~~ 83 (164)
T cd04175 65 ----MR---DLYMKNGQGFVLVYSIT 83 (164)
T ss_pred ----HH---HHHHhhCCEEEEEEECC
Confidence 11 22467899999999974
No 72
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.47 E-value=9.5e-14 Score=128.28 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=64.1
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
...++|+|+|.+|+|||||+|+|++.. ...+++.+++|.++....+ + .++.+|||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCc
Confidence 355899999999999999999999764 5677888999887654433 1 248999999985
Q ss_pred CCCCcc------cccccccccchhccceEEEEEeccC
Q 012870 133 KGASQG------EGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 133 ~~~~~~------~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...... ..+...++.....+|++++|+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH 112 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC
Confidence 432211 1112234444446789999999865
No 73
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.47 E-value=8.3e-13 Score=118.66 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=56.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||||||||+|+|+++ .......|..+.+.....+.+.+. ...+.+|||||......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG-RFVSKYLPTIGIDYGVKKVSVRNK---------------EVRVNFFDLSGHPEYLE 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCccceeEEEEEEEECCe---------------EEEEEEEECCccHHHHH
Confidence 48999999999999999999954 343344454444443444444332 24689999999843221
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+. ...++++|++++|+|.++
T Consensus 65 ----~~---~~~~~~~d~~ilv~D~~~ 84 (168)
T cd04119 65 ----VR---NEFYKDTQGVLLVYDVTD 84 (168)
T ss_pred ----HH---HHHhccCCEEEEEEECCC
Confidence 22 223578999999999753
No 74
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=127.09 Aligned_cols=148 Identities=23% Similarity=0.217 Sum_probs=95.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..+.|+++|++|||||||+|+|+|+. .+.+|..||.|+.+|...+. ..+.|||.||+--
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--------------------~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--------------------DELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--------------------CcEEEEeCCCccc
Confidence 45799999999999999999999744 59999999999999888762 3489999999832
Q ss_pred CC-C-----cccccccccccchhccceEEEEEeccCCc----------------ceEEecCccCCCChhHHHhHhhhccc
Q 012870 134 GA-S-----QGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 134 ~~-~-----~~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
-. + +...+...|+..=.+-.++++++|+.+.. ++..+.++.|.+.+-+.-+.
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~------ 156 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ------ 156 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH------
Confidence 11 1 12223344554434567889999987632 35556677776654322111
Q ss_pred HHHHHHHHHHHHhcccCC----CccccchHHHHHHHHHHHHhhh
Q 012870 192 LDQIEKRMEKLKKGKAKD----SQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~----~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+....+.+....+.. ..|+.++.|++++...|.+.+.
T Consensus 157 ---l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 157 ---LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ---HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 111111111111111 1567777788888888877664
No 75
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.46 E-value=8.8e-13 Score=119.66 Aligned_cols=149 Identities=21% Similarity=0.178 Sum_probs=90.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccc-cceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI-EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~-~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
+||+++|.+|||||||+++++++ ... ..+|.|+. +.....+.+.+. ..++.+|||||..+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~-~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK-KFM-ADCPHTIGVEFGTRIIEVNGQ---------------KIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-CCC-CCCCcccceeEEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 69999999999999999999944 332 33343322 222222333321 2468999999974322
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....++++|++++|+|+++.. .+..+ ..
T Consensus 66 ~-------~~~~~~~~~~~~ilv~d~~~~~-------------s~~~~------------~~------------------ 95 (166)
T cd04122 66 A-------VTRSYYRGAAGALMVYDITRRS-------------TYNHL------------SS------------------ 95 (166)
T ss_pred H-------HHHHHhcCCCEEEEEEECCCHH-------------HHHHH------------HH------------------
Confidence 1 2234578999999999975321 01111 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.++.+.. . .....|+++++||.| +.+. .....++.++++++.+.+++
T Consensus 96 ------~~~~~~~-----------------------~-~~~~~~iiiv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 96 ------WLTDARN-----------------------L-TNPNTVIFLIGNKAD--LEAQ-RDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred ------HHHHHHH-----------------------h-CCCCCeEEEEEECcc--cccc-cCcCHHHHHHHHHHcCCEEE
Confidence 0110000 0 013568999999984 4332 13345677788887788999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
.+||+...++
T Consensus 143 e~Sa~~~~~i 152 (166)
T cd04122 143 ECSAKTGENV 152 (166)
T ss_pred EEECCCCCCH
Confidence 9999987666
No 76
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.46 E-value=4.5e-13 Score=119.70 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|+++++. . ...++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH-F-VDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-cCCcCCcchheEEEEEEECCE---------------EEEEEEEECCCCcchHH
Confidence 689999999999999999999543 2 233343443333333334321 13478999999754322
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+. -..++.+|++++|+|++
T Consensus 65 ----l~---~~~~~~~~~~i~v~~~~ 83 (162)
T cd04138 65 ----MR---DQYMRTGEGFLCVFAIN 83 (162)
T ss_pred ----HH---HHHHhcCCEEEEEEECC
Confidence 22 23466899999999974
No 77
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=3.5e-13 Score=125.37 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|++.. .+.+++.+++|+++..... ..++.+|||||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--------------------NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--------------------CCeEEEeCCCCCCC
Confidence 45899999999999999999999654 5778888888876544332 13699999999754
Q ss_pred CCCcc------cccccccccchhccceEEEEEeccCCc----------------ceEEecCccCCCChhHHHhHhhhccc
Q 012870 134 GASQG------EGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 134 ~~~~~------~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
..... ..+...++.....++++++|+|+.... ++..+.|+.|...+-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~--------- 153 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGER--------- 153 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHH---------
Confidence 22111 112233445555668899999876421 23344455554321110
Q ss_pred HHHHHHHHH-HHHh-cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 192 LDQIEKRME-KLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 192 ~~~l~~~~~-~~~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.+...+. .+.. ..+..++||+++.++.++++.+.+.+.+
T Consensus 154 -~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 154 -KKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred -HHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 00001111 1111 1223358999999999999999888764
No 78
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=1.5e-12 Score=122.55 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=94.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeC-CCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~-d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
+||+++|.+|||||||+|++++ ........|..+.+.....+.++ +. ...+.+|||||.....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~-~~~~~~~~~t~~~d~~~~~v~~~~~~---------------~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH-GIFSQHYKATIGVDFALKVIEWDPNT---------------VVRLQLWDIAGQERFG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-CCCCCCCCCceeEEEEEEEEEECCCC---------------EEEEEEEECCCchhhh
Confidence 4899999999999999999994 33333334444444444444444 21 2468999999984322
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....+++||++++|+|+++... ++.+ ..
T Consensus 65 ~-------~~~~~~~~a~~~ilv~D~t~~~s-------------~~~~------------~~------------------ 94 (201)
T cd04107 65 G-------MTRVYYRGAVGAIIVFDVTRPST-------------FEAV------------LK------------------ 94 (201)
T ss_pred h-------hHHHHhCCCCEEEEEEECCCHHH-------------HHHH------------HH------------------
Confidence 1 12334678999999999743211 1111 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcC-CcE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ-SGR 294 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~-~~~ 294 (454)
.++.+...+. +......|+++++||.| +.+. .....++++++++..+ .++
T Consensus 95 ------~~~~i~~~~~--------------------~~~~~~~piilv~NK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 145 (201)
T cd04107 95 ------WKADLDSKVT--------------------LPNGEPIPCLLLANKCD--LKKR-LAKDGEQMDQFCKENGFIGW 145 (201)
T ss_pred ------HHHHHHHhhc--------------------ccCCCCCcEEEEEECCC--cccc-cccCHHHHHHHHHHcCCceE
Confidence 0000100000 00114679999999985 4321 1445677888888777 689
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 146 ~e~Sak~~~~v~ 157 (201)
T cd04107 146 FETSAKEGINIE 157 (201)
T ss_pred EEEeCCCCCCHH
Confidence 999999876653
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.46 E-value=1.8e-12 Score=116.48 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=53.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.||||||||+|+|++.. ......|..+.+.....+.++.. ..++.+|||||..+...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDT-FDPDLAATIGVDFKVKTLTVDGK---------------KVKLAIWDTAGQERFRT 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCcccCCcccceEEEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 489999999999999999999543 33323343333333333333221 24689999999744322
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+ ....++.+|++++|+|.+
T Consensus 65 ----~---~~~~~~~~d~~i~v~d~~ 83 (161)
T cd01863 65 ----L---TSSYYRGAQGVILVYDVT 83 (161)
T ss_pred ----h---hHHHhCCCCEEEEEEECC
Confidence 1 123357899999999974
No 80
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.45 E-value=6e-13 Score=120.78 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=54.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||+|+|+++ .......|.++.+.....+..++. ...+.+|||||..+...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD-SFTSAFVSTVGIDFKVKTVFRNDK---------------RVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHHHHH
Confidence 68999999999999999999944 333333343332222222222221 24689999999753222
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.....++.+|++++|+|++
T Consensus 66 -------~~~~~~~~~~~~l~v~d~~ 84 (165)
T cd01865 66 -------ITTAYYRGAMGFILMYDIT 84 (165)
T ss_pred -------HHHHHccCCcEEEEEEECC
Confidence 2234468899999999974
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=4.8e-13 Score=124.84 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=55.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCccc-ccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT-~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.||+++|.+|||||||++++++ .....+.++.|+ .+.....+.+++.. .++.+|||||.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 64 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD-GAFLNGNFIATVGIDFRNKVVTVDGVK---------------VKLQIWDTAGQERFR 64 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-CCCCccCcCCcccceeEEEEEEECCEE---------------EEEEEEeCCCcHHHH
Confidence 4899999999999999999994 444444444333 23333334444322 468999999964322
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. .....++.+|++++|+|++
T Consensus 65 ~-------~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 65 S-------VTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred H-------hhHHHccCCCEEEEEEECC
Confidence 1 1223467899999999974
No 82
>PRK04213 GTP-binding protein; Provisional
Probab=99.43 E-value=7.8e-13 Score=124.01 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=59.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC-
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK- 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~- 133 (454)
..++|+++|.||||||||+|+|+|. .+.++..|++|.++....+ ..+.+|||||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~-~~~~~~~~~~t~~~~~~~~---------------------~~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGK-KVRVGKRPGVTRKPNHYDW---------------------GDFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCceeeCceEEee---------------------cceEEEeCCccccc
Confidence 3579999999999999999999954 4678889999987654322 1489999999722
Q ss_pred -CCCc--cccccc---ccc-cchhccceEEEEEeccC
Q 012870 134 -GASQ--GEGLGN---KFL-SHIREVDSILQVVRCFE 163 (454)
Q Consensus 134 -~~~~--~~~l~~---~fl-~~ir~aD~il~VvD~~~ 163 (454)
+.+. .+.+.. .++ ..+..+|++++|+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcc
Confidence 1111 011111 122 23456789999999853
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.43 E-value=3e-12 Score=116.00 Aligned_cols=83 Identities=24% Similarity=0.185 Sum_probs=55.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|+|++ ........+..+.+.....+.+++. ..++.+|||||......
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN-KKFSNQYKATIGADFLTKEVTVDDK---------------LVTLQIWDTAGQERFQS 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-CCCCcCcCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHHHHh
Confidence 4899999999999999999994 4433333343444444444444432 24688999999743221
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.....+++||++++|+|+.
T Consensus 65 -------~~~~~~~~~d~~i~v~d~~ 83 (172)
T cd01862 65 -------LGVAFYRGADCCVLVYDVT 83 (172)
T ss_pred -------HHHHHhcCCCEEEEEEECC
Confidence 2234467899999999974
No 84
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.43 E-value=1.9e-12 Score=116.17 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=56.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|+|++. .......|..+.+.....+..++. ..++.+|||||......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG-KFSEQYKSTIGVDFKTKTIEVDGK---------------RVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHHHHH
Confidence 48999999999999999999944 344444555555544444444321 14689999999743221
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+. ...++.+|++++|+|+.
T Consensus 65 ----~~---~~~~~~~d~~ilv~d~~ 83 (164)
T smart00175 65 ----IT---SSYYRGAVGALLVYDIT 83 (164)
T ss_pred ----HH---HHHhCCCCEEEEEEECC
Confidence 11 22356799999999974
No 85
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.43 E-value=1.2e-12 Score=120.10 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.+|||||||+|++++ ........|..+.+.....+.+....... . ........+.+|||||..+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~i~Dt~G~~~~~ 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTD-NKFNPKFITTVGIDFREKRVVYNSSGPGG---T--LGRGQRIHLQLWDTAGQERFR 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc-CCCCccCCCccceEEEEEEEEEcCccccc---c--ccCCCEEEEEEEeCCChHHHH
Confidence 47999999999999999999994 44443334444334433334332210000 0 000012468999999974322
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. .....++++|++++|+|++
T Consensus 78 ~-------~~~~~~~~~~~~i~v~d~~ 97 (180)
T cd04127 78 S-------LTTAFFRDAMGFLLIFDLT 97 (180)
T ss_pred H-------HHHHHhCCCCEEEEEEECC
Confidence 1 1233467899999999974
No 86
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.43 E-value=4.2e-12 Score=114.45 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=54.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|.||||||||++++.++. ... .++.|+.+.....+.+++. +..+.+|||||..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT-FIE-KYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC-CCCCchhheEEEEEEECCE---------------EEEEEEEECCCcccccc
Confidence 689999999999999999999443 322 2233333333334444321 23588999999754433
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. .-..++++|++++|+|+++
T Consensus 65 ~-------~~~~~~~ad~~i~v~d~~~ 84 (163)
T cd04176 65 M-------RDLYIKNGQGFIVVYSLVN 84 (163)
T ss_pred h-------HHHHHhhCCEEEEEEECCC
Confidence 1 1223678999999999743
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.42 E-value=8e-13 Score=118.72 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=54.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeC--CCccchhcccccCccccCceeEEEecCCccCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP--DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~--d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
+||+++|.+|+|||||+|+++++ .......|..+.+.....+.++ +. ...+.+|||||..+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG-IFTKDYKKTIGVDFLEKQIFLRQSDE---------------DVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCcEEEEEEEEEEEEcCCCC---------------EEEEEEeeCCchHHH
Confidence 48999999999999999999943 3333333444444333333333 11 246999999997432
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. .....++.+|++++|+|+.
T Consensus 65 ~~-------~~~~~~~~~~~~v~v~d~~ 85 (162)
T cd04106 65 DA-------ITKAYYRGAQACILVFSTT 85 (162)
T ss_pred HH-------hHHHHhcCCCEEEEEEECC
Confidence 21 1233467899999999974
No 88
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.42 E-value=3.1e-12 Score=119.29 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=54.4
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.+|||||||+|+|+++. . ...++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-F-VETYDPTIEDSYRKQVVVDGQ---------------PCMLEVLDTAGQEEYTA- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-C-CccCCCchHhhEEEEEEECCE---------------EEEEEEEECCCchhhHH-
Confidence 58999999999999999999443 2 233444544443333333321 13588999999754332
Q ss_pred ccccccccccchhccceEEEEEeccC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+ ....++.+|++++|+|+++
T Consensus 63 ---~---~~~~~~~ad~~ilv~d~~~ 82 (190)
T cd04144 63 ---L---RDQWIREGEGFILVYSITS 82 (190)
T ss_pred ---H---HHHHHHhCCEEEEEEECCC
Confidence 1 1234678999999999743
No 89
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=2.3e-12 Score=122.69 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.+|||||||+|+|+++. ......|.++.+.....+.+.+.. ...+.+|||||.....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~~~ti~~d~~~~~i~~~~~~--------------~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR-FAEVSDPTVGVDFFSRLIEIEPGV--------------RIKLQLWDTAGQERFR 66 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCceeceEEEEEEEEECCCC--------------EEEEEEEeCCcchhHH
Confidence 3799999999999999999999544 332233444444444444443211 2468999999974322
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. .....++++|++++|+|++
T Consensus 67 ~-------~~~~~~~~~d~iilv~D~~ 86 (211)
T cd04111 67 S-------ITRSYYRNSVGVLLVFDIT 86 (211)
T ss_pred H-------HHHHHhcCCcEEEEEEECC
Confidence 1 1223467899999999974
No 90
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=4.4e-13 Score=145.86 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=62.3
Q ss_pred ecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc--ccc
Q 012870 63 GLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--GEG 140 (454)
Q Consensus 63 G~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~~ 140 (454)
|.||||||||+|+|+| ....++++|++|++...+.+.+++ .++.+|||||+.+.... .+.
T Consensus 1 G~pNvGKSSL~N~Ltg-~~~~v~n~pG~Tv~~~~~~i~~~~-----------------~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG-ANQTVGNWPGVTVEKKEGKLGFQG-----------------EDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHhC-CCCeecCCCCeEEEEEEEEEEECC-----------------eEEEEEECCCccccCccchHHH
Confidence 8999999999999995 456899999999999998887764 46899999999754332 222
Q ss_pred cccccccchhccceEEEEEecc
Q 012870 141 LGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 141 l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+...++. .+.+|++++|+|++
T Consensus 63 v~~~~l~-~~~aDvvI~VvDat 83 (591)
T TIGR00437 63 VARDYLL-NEKPDLVVNVVDAS 83 (591)
T ss_pred HHHHHHh-hcCCCEEEEEecCC
Confidence 3333322 24789999999974
No 91
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.40 E-value=1.5e-12 Score=117.17 Aligned_cols=84 Identities=25% Similarity=0.207 Sum_probs=56.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|+|++. .......|..+.+.....+.+++. ...+.+|||||......
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVEN-KFKEDSQHTIGVEFGSKIIRVGGK---------------RVKLQIWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCceeeeEEEEEEEECCE---------------EEEEEEEECcchHHHHH
Confidence 48999999999999999999944 333334444444444444444432 14589999999743221
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.....++.+|++++|+|+++
T Consensus 65 -------~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04113 65 -------VTRSYYRGAAGALLVYDITN 84 (161)
T ss_pred -------hHHHHhcCCCEEEEEEECCC
Confidence 12234678999999999753
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.40 E-value=1.4e-12 Score=119.10 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=88.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.+|||||||+|+|++.. . .. +.+|+.+....+... +.++.+|||||......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~-~~--~~~T~~~~~~~~~~~-----------------~~~i~l~Dt~G~~~~~~- 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F-MQ--PIPTIGFNVETVEYK-----------------NLKFTIWDVGGKHKLRP- 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C-CC--cCCcCceeEEEEEEC-----------------CEEEEEEECCCChhcch-
Confidence 58999999999999999999542 2 22 344554444444333 35799999999854322
Q ss_pred ccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
.+...++++|++++|+|+++. .+++.+.|+.|..... +.+.+.
T Consensus 59 ------~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~~~~ 122 (169)
T cd04158 59 ------LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL----------SVEEMT 122 (169)
T ss_pred ------HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC----------CHHHHH
Confidence 233456889999999998763 2355566676643211 111111
Q ss_pred HHHHHHHhc-----ccCCCccccchHHHHHHHHHHHHhhhCCCCC
Q 012870 197 KRMEKLKKG-----KAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236 (454)
Q Consensus 197 ~~~~~~~~~-----~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~ 236 (454)
..+ ..... ....++||++|.|+.++++.+.+.+.++.++
T Consensus 123 ~~~-~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 123 ELL-SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred HHh-CCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence 111 01000 0112379999999999999999888777654
No 93
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.39 E-value=2.5e-12 Score=116.89 Aligned_cols=86 Identities=24% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||||||||+++++ .........|..+.+.....+.+.+. ...+.+|||||..+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYV-TNKFDTQLFHTIGVEFLNKDLEVDGH---------------FVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHH-cCCCCcCcCCceeeEEEEEEEEECCe---------------EEEEEEEeCCChHHH
Confidence 34799999999999999999999 44444444444443333333434332 246889999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. + ....++.+|++++|+|+.+
T Consensus 68 ~~----~---~~~~~~~~d~~i~v~d~~~ 89 (170)
T cd04116 68 RS----L---RTPFYRGSDCCLLTFAVDD 89 (170)
T ss_pred HH----h---HHHHhcCCCEEEEEEECCC
Confidence 22 1 1234678999999999743
No 94
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.39 E-value=1.6e-12 Score=123.50 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=58.0
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCC------------------------------CCcccccceeeeeeeCCCccc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDPRLH 107 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~------------------------------~p~tT~~~~~~~~~~~d~r~~ 107 (454)
+|+|||.||+|||||+|+|++...+..++ .+++|+++....+...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 58999999999999999998654443321 1456666655555443
Q ss_pred hhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.++.||||||..+ +.......++.+|++++|+|+.+
T Consensus 76 ------------~~~~~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 76 ------------KRKFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred ------------CceEEEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCC
Confidence 35799999999743 22233455789999999999853
No 95
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.38 E-value=1.9e-12 Score=113.51 Aligned_cols=146 Identities=22% Similarity=0.218 Sum_probs=94.0
Q ss_pred EEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCcccc
Q 012870 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (454)
Q Consensus 61 ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 140 (454)
|+|.+|+|||||+|+|++......++.+++|.++........+ ...+.+|||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999976666688889999888777765542 245999999999766544333
Q ss_pred cccccccchhccceEEEEEeccCCc----------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHh
Q 012870 141 LGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (454)
Q Consensus 141 l~~~fl~~ir~aD~il~VvD~~~~~----------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~ 204 (454)
....+...++.+|++++|+|+.... +++.+.|+.|...+-..... .. ..........
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~------~~-~~~~~~~~~~ 137 (163)
T cd00880 65 REELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEEL------LE-LRLLILLLLL 137 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHH------HH-HHHhhccccc
Confidence 2345556678999999999987632 34555566665432111100 00 0000000011
Q ss_pred cccCCCccccchHHHHHHHHHHHHh
Q 012870 205 GKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 205 ~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
..+...+|++++.++.++++.+.+.
T Consensus 138 ~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 138 GLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CCceEEEeeeccCCHHHHHHHHHhh
Confidence 1112237899999998888877654
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.38 E-value=8.3e-12 Score=111.44 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=54.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|+|||||+|+|++... .....+.++.+.....+.+... ...+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKF-NEKHESTTQASFFQKTVNIGGK---------------RIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCccceeEEEEEEEECCE---------------EEEEEEEECCchHHHHH
Confidence 4899999999999999999995433 2233333333333333433321 24689999999743322
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+... .++++|++++|+|+++
T Consensus 65 ----~~~~---~~~~~~~~i~v~d~~~ 84 (162)
T cd04123 65 ----LGPI---YYRDADGAILVYDITD 84 (162)
T ss_pred ----hhHH---HhccCCEEEEEEECCC
Confidence 2222 2467999999999743
No 97
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.38 E-value=1.3e-12 Score=117.79 Aligned_cols=144 Identities=16% Similarity=0.063 Sum_probs=87.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+.|+|+|.+|||||||+|+|++. .......+++|.+.....+..... .+..+.+|||||.....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~iiDtpG~~~~~- 64 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT-NVAAGEAGGITQHIGAFEVPAEVL--------------KIPGITFIDTPGHEAFT- 64 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc-ccccccCCCeEEeeccEEEecccC--------------CcceEEEEeCCCcHHHH-
Confidence 46999999999999999999944 444455667777655444443200 02469999999974321
Q ss_pred cccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCCh-hHHHhHhhhcccHHHHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD-VDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~d-i~~l~~el~l~d~~~l~~~~ 199 (454)
......++.+|++++|+|+++. .+++.+.|+.|.... ...+..++ ....
T Consensus 65 ------~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~--------~~~~ 130 (168)
T cd01887 65 ------NMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNEL--------SELG 130 (168)
T ss_pred ------HHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHH--------HHhh
Confidence 1112345789999999998762 234556677774321 11111100 0000
Q ss_pred H----HHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 200 E----KLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 200 ~----~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
. ......+..++|++++.|+.++++.+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 131 LQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 0 000011223489999999999998886654
No 98
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.38 E-value=1.3e-12 Score=118.80 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=78.1
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.||||||||+|+|+|.... + ...+.+.+.. . .+|||||+......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~-----~~~~~v~~~~-----------------~--~~iDtpG~~~~~~~ 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----A-----RKTQAVEFND-----------------K--GDIDTPGEYFSHPR 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----C-----ccceEEEECC-----------------C--CcccCCccccCCHH
Confidence 7999999999999999999954311 0 1122222221 1 26999998543321
Q ss_pred ccccccccccchhccceEEEEEeccCCcc--------------eEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDND--------------IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~~--------------v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~ 203 (454)
+.......+++||++++|+|+++... ++.+.|+.|... .+.+.+........
T Consensus 54 ---~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~-----------~~~~~~~~~~~~~~ 119 (158)
T PRK15467 54 ---WYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPD-----------ADVAATRKLLLETG 119 (158)
T ss_pred ---HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCc-----------ccHHHHHHHHHHcC
Confidence 22333445789999999999976432 233334444211 01111122222211
Q ss_pred hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 204 KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 204 ~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
...+...+||+++.|+.++++.+.+.+.+
T Consensus 120 ~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 120 FEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 11123348999999999999999887753
No 99
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=5.7e-12 Score=117.01 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=55.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|+++++ .......|..+.+.....+.+++. ...+.+|||||......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~g~~~~~~ 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED-EFSESTKSTIGVDFKIKTVYIENK---------------IIKLQIWDTNGQERFRS 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCCcHHHHh
Confidence 48999999999999999999944 333323344443333334444332 24588999999743221
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.....++++|++++|+|++
T Consensus 65 -------~~~~~~~~~d~iilv~d~~ 83 (188)
T cd04125 65 -------LNNSYYRGAHGYLLVYDVT 83 (188)
T ss_pred -------hHHHHccCCCEEEEEEECc
Confidence 2233467899999999974
No 100
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.38 E-value=6.4e-12 Score=119.09 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=58.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|.++|.+|||||||++++. .........|..+.+.....+.+++.. .++.+|||||..+...
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~-~~~f~~~~~~Ti~~~~~~~~i~~~~~~---------------v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFT-DDTFCEACKSGVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERFNS 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHH-hCCCCCcCCCcceeEEEEEEEEECCEE---------------EEEEEEeCCCchhhHH
Confidence 479999999999999999999 444433333444445555555554422 4689999999864332
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+ .-..+++||++++|+|+++
T Consensus 65 ----l---~~~y~~~ad~iIlVfDvtd 84 (202)
T cd04120 65 ----I---TSAYYRSAKGIILVYDITK 84 (202)
T ss_pred ----H---HHHHhcCCCEEEEEEECcC
Confidence 1 2234779999999999854
No 101
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.37 E-value=2e-12 Score=116.56 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=85.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.||||||||+|++++.. .. ..++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~ 63 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH-FV-DDYDPTIEDSYRKQIEIDGE---------------VCLLDILDTAGQEEFSA 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc-CC-cccCCchhhhEEEEEEECCE---------------EEEEEEEECCCcccchH
Confidence 489999999999999999999543 22 23333443333333333321 24688999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
+. ...++.+|++++|+|+.+. .+++.+.|+.|...+... ..+..
T Consensus 64 ----~~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--------~~~~~ 128 (164)
T smart00173 64 ----MR---DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV--------STEEG 128 (164)
T ss_pred ----HH---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceE--------cHHHH
Confidence 11 2336789999999998762 245566677774322111 01111
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
........ .+..++||+++.|+.++++.+.+.+.
T Consensus 129 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 129 KELARQWG--CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHcC--CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 11111111 22345899999999999998887664
No 102
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.37 E-value=1.1e-12 Score=120.29 Aligned_cols=142 Identities=21% Similarity=0.225 Sum_probs=87.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccC---------------CCCcccccceeeeeeeCCCccchhcccccCccccCce
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs---------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~ 122 (454)
+|+++|.||||||||+|+|++....... ..+++|.+.....+... ...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 63 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP-----------------DRR 63 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC-----------------CEE
Confidence 4899999999999999999965433211 12234444333333222 356
Q ss_pred eEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCCh--hHHHh
Q 012870 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD--VDVIN 184 (454)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~d--i~~l~ 184 (454)
+.||||||... +...+...++.+|++++|+|+++. .++..+.|+.|.... ....
T Consensus 64 ~~liDtpG~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~- 135 (189)
T cd00881 64 VNFIDTPGHED-------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEV- 135 (189)
T ss_pred EEEEeCCCcHH-------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHH-
Confidence 99999999743 223344557799999999998752 345667788775531 1111
Q ss_pred HhhhcccHHHHHHHHHHHH------------hcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 185 LELVFSDLDQIEKRMEKLK------------KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 185 ~el~l~d~~~l~~~~~~~~------------~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+.+.+.+.... ...+..++||+++.|+.++++.+.+.++
T Consensus 136 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 136 -------LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred -------HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 111111111111 0111234899999999999999888775
No 103
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.37 E-value=1.9e-12 Score=120.95 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=93.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC------CccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~------~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
.+|+++|.+|+|||||+|+|++. .....+..+++|++.....+.+...... .....+ +.-..++.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL--RELINP-GEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc--cccccc-cccCceEEEEECCC
Confidence 37999999999999999999952 2233344567888777665554310000 000000 01135799999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.. .+...+...+..+|++++|+|+.+. .+++.+.|+.|....-. ... ..+.
T Consensus 78 ~~-------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-~~~-----~~~~ 144 (192)
T cd01889 78 HA-------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEE-RER-----KIEK 144 (192)
T ss_pred cH-------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-HHH-----HHHH
Confidence 83 2444555667789999999998752 23455667776542110 000 0111
Q ss_pred HHHHHHH-HH----hcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEK-LK----KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~-~~----~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+.+.+.. +. ...+..++||+++.|+.+|++.+....+
T Consensus 145 ~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 145 MKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1121111 11 1112345899999999999988866554
No 104
>PLN03118 Rab family protein; Provisional
Probab=99.37 E-value=1.2e-11 Score=117.28 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=56.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||+|+|.+|||||||+|+|+++..... .|.++.+.....+.+++. ..++.||||||..+.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL--APTIGVDFKIKQLTVGGK---------------RLKLTIWDTAGQERF 75 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc--CCCceeEEEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 458999999999999999999996543322 233332233333333321 146899999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. + ....++.+|++++|+|+++
T Consensus 76 ~~----~---~~~~~~~~d~~vlv~D~~~ 97 (211)
T PLN03118 76 RT----L---TSSYYRNAQGIILVYDVTR 97 (211)
T ss_pred HH----H---HHHHHhcCCEEEEEEECCC
Confidence 32 2 1234678999999999753
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.37 E-value=1.3e-11 Score=110.48 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=54.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||+|+|++... +..+..++.+........+.. ...+.+|||||......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~ 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------DVQLNILDTAGQEDYAA 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCE---------------EEEEEEEECCChhhhhH
Confidence 4899999999999999999994332 234555554443333333321 23589999999754322
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+.. ..++.+|++++|+|+.
T Consensus 64 ----~~~---~~~~~~~~~i~v~d~~ 82 (164)
T cd04139 64 ----IRD---NYHRSGEGFLLVFSIT 82 (164)
T ss_pred ----HHH---HHhhcCCEEEEEEECC
Confidence 222 2356789999999974
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=117.79 Aligned_cols=152 Identities=18% Similarity=0.139 Sum_probs=95.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+|+|.+|||||||+|+|++. .......|..+.+.....+.+++.. ..+.+|||||.....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~-~~~~~~~~ti~~~~~~~~i~~~~~~---------------i~l~l~Dt~G~~~~~ 69 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDK-RFQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESFR 69 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCCccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHH
Confidence 479999999999999999999954 3333344544444445555554322 358899999975322
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....++.+|++++|+|+++.. .+..+ ..
T Consensus 70 ~-------~~~~~~~~ad~~vlv~D~~~~~-------------s~~~l------------~~------------------ 99 (210)
T PLN03108 70 S-------ITRSYYRGAAGALLVYDITRRE-------------TFNHL------------AS------------------ 99 (210)
T ss_pred H-------HHHHHhccCCEEEEEEECCcHH-------------HHHHH------------HH------------------
Confidence 1 2234467899999999974211 01110 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.++.+.. . .....|+++++||.| +.+. +....++.++++++++.+++
T Consensus 100 ------~~~~~~~-----------------------~-~~~~~piiiv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 100 ------WLEDARQ-----------------------H-ANANMTIMLIGNKCD--LAHR-RAVSTEEGEQFAKEHGLIFM 146 (210)
T ss_pred ------HHHHHHH-----------------------h-cCCCCcEEEEEECcc--Cccc-cCCCHHHHHHHHHHcCCEEE
Confidence 0000000 0 013679999999984 4332 13355677788887888999
Q ss_pred EechhhhHHhc
Q 012870 296 TISAQVEAELT 306 (454)
Q Consensus 296 ~iSA~~E~~l~ 306 (454)
.+||+...++.
T Consensus 147 e~Sa~~~~~v~ 157 (210)
T PLN03108 147 EASAKTAQNVE 157 (210)
T ss_pred EEeCCCCCCHH
Confidence 99999876663
No 107
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.36 E-value=6.6e-12 Score=113.91 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=51.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|||||||+|+++++. ......| ++.......+..... ...+.+|||||......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIP-TIEDTYRQVISCSKN---------------ICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCC-cchheEEEEEEECCE---------------EEEEEEEECCCCCcchH
Confidence 689999999999999999999543 3222222 111111111222211 24689999999854322
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+. ...++.+|++++|+|+++
T Consensus 65 ----~~---~~~~~~~~~~ilv~d~~~ 84 (165)
T cd04140 65 ----MQ---RLSISKGHAFILVYSVTS 84 (165)
T ss_pred ----HH---HHHhhcCCEEEEEEECCC
Confidence 11 233568999999999743
No 108
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=126.84 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=109.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++.|-|+|.++||||||+|||.++...+++..+-+|..++.....++. ..+.+|||||+.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gd 99 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGD 99 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCccc
Confidence 35677889999999999999999977788888888777666666655553 3599999999988
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC------------------cceEEecCccC---CCChhHHHhHhhhcccH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVD---PKSDVDVINLELVFSDL 192 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~------------------~~v~~v~~~~d---p~~di~~l~~el~l~d~ 192 (454)
+...+..+...+.+.+...|++++++|+.+. .+++.+.+..| |.++...-.....-.-.
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 7776666777788889999999999998762 23444555444 22111111110111112
Q ss_pred HHHHHHHHHHHhccc-CCC---ccccchHHHHHHHHHHHHhhhCCC
Q 012870 193 DQIEKRMEKLKKGKA-KDS---QSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 193 ~~l~~~~~~~~~~~~-~~~---vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
+.++++.+.+.+... ..| +|...+.|+..++..+.+.+|...
T Consensus 180 qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 180 QFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 334444444433332 223 455777888888888888887543
No 109
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.36 E-value=2.2e-12 Score=116.61 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=83.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCcc---ccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~---~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
+|+++|.+|||||||+|+|++.... .....+.+|+..+.+.+.++ +.++.+|||||....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG-----------------NARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC-----------------CEEEEEEECCCChhh
Confidence 4899999999999999999853221 11223355666666666554 256999999998532
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++.+|++++|+|+++. .+++.+.|+.|-..... .+
T Consensus 64 ~~-------~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~----------~~ 126 (167)
T cd04160 64 RS-------LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS----------VE 126 (167)
T ss_pred HH-------HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC----------HH
Confidence 22 233457789999999998753 24566667777432110 01
Q ss_pred HHHHHHHHHH-----hcccCCCccccchHHHHHHHHHHH
Q 012870 194 QIEKRMEKLK-----KGKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 194 ~l~~~~~~~~-----~~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
.+...+.... ...+..++||++|.|+.++++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 1111111110 001223489999999998887764
No 110
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=2.5e-12 Score=116.47 Aligned_cols=143 Identities=12% Similarity=0.090 Sum_probs=83.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.+|||||||++++.++. ......+..+.+.....+.++.. ..++.+|||||.....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEIEGK---------------RVKLQIWDTAGQERFR 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 4799999999999999999998433 22222233333333333433321 1368999999964321
Q ss_pred CcccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
......++.+|++++|+|+++.. +++.+.|+.|....-+. ..+..
T Consensus 67 -------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~ 131 (165)
T cd01864 67 -------TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREV--------LFEEA 131 (165)
T ss_pred -------HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccccc--------CHHHH
Confidence 12233467899999999987732 24455566664321111 00111
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.. +.+........++||++|.|+.++++.+.+.|
T Consensus 132 ~~-~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 132 CT-LAEKNGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred HH-HHHHcCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 11 11111111123489999999999998887643
No 111
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.36 E-value=5.8e-12 Score=114.13 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=55.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+++++++ .......|..+.+.....+.+++. ...+.+|||||.....+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDN-EFHSSHISTIGVDFKMKTIEVDGI---------------KVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcHhHHh
Confidence 47999999999999999999943 343333443333333334444432 24688999999754322
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.....++.+|++++|+|+++
T Consensus 65 -------~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04117 65 -------ITKQYYRRAQGIFLVYDISS 84 (161)
T ss_pred -------hHHHHhcCCcEEEEEEECCC
Confidence 12234678999999999743
No 112
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.35 E-value=6.8e-12 Score=110.77 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=55.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||||||||+|+|++... .....|..+.+.....+..+.. ...+.+|||||......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 64 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF-DENYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQERFRS 64 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-CCccCCceeeeeEEEEEEECCE---------------EEEEEEEecCChHHHHH
Confidence 4799999999999999999995443 3334444444444444443321 24689999999843221
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.....++++|++++|+|++
T Consensus 65 -------~~~~~~~~~d~ii~v~d~~ 83 (159)
T cd00154 65 -------ITPSYYRGAHGAILVYDIT 83 (159)
T ss_pred -------HHHHHhcCCCEEEEEEECC
Confidence 2234467899999999974
No 113
>PLN03110 Rab GTPase; Provisional
Probab=99.34 E-value=1.2e-11 Score=118.03 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||++||.+|||||||+++|++ ........|..+.+.....+.+++. ...+.+|||||....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~-~~~~~~~~~t~g~~~~~~~v~~~~~---------------~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTR-NEFCLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQERY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc-CCCCCCCCCceeEEEEEEEEEECCE---------------EEEEEEEECCCcHHH
Confidence 457999999999999999999994 4444444555555555556655542 246899999997532
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. .....++.+|++++|+|.+
T Consensus 75 ~~-------~~~~~~~~~~~~ilv~d~~ 95 (216)
T PLN03110 75 RA-------ITSAYYRGAVGALLVYDIT 95 (216)
T ss_pred HH-------HHHHHhCCCCEEEEEEECC
Confidence 21 2234567899999999974
No 114
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.34 E-value=1e-11 Score=116.37 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=95.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...||+++|.++||||||++++.++ .......|..+.+.....+.+++. ...+.+|||||....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~-~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~iwDt~G~~~~ 68 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG-STESPYGYNMGIDYKTTTILLDGR---------------RVKLQLWDTSGQGRF 68 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCcceeEEEEEEEEECCE---------------EEEEEEEeCCCcHHH
Confidence 4589999999999999999999943 332222233333333333444432 246899999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .+...++.||++++|+|+++... ++.+ ..
T Consensus 69 ~~-------l~~~~~~~ad~illVfD~t~~~S-------------f~~~------------~~----------------- 99 (189)
T cd04121 69 CT-------IFRSYSRGAQGIILVYDITNRWS-------------FDGI------------DR----------------- 99 (189)
T ss_pred HH-------HHHHHhcCCCEEEEEEECcCHHH-------------HHHH------------HH-----------------
Confidence 32 22344689999999999854211 1111 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.++.+.+ . ...-|+++++||.| +.+. +....++++.++++++.++
T Consensus 100 -------w~~~i~~-----------------------~--~~~~piilVGNK~D--L~~~-~~v~~~~~~~~a~~~~~~~ 144 (189)
T cd04121 100 -------WIKEIDE-----------------------H--APGVPKILVGNRLH--LAFK-RQVATEQAQAYAERNGMTF 144 (189)
T ss_pred -------HHHHHHH-----------------------h--CCCCCEEEEEECcc--chhc-cCCCHHHHHHHHHHcCCEE
Confidence 0111100 0 02569999999985 4332 2345678889998889999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+.+||+...++.
T Consensus 145 ~e~SAk~g~~V~ 156 (189)
T cd04121 145 FEVSPLCNFNIT 156 (189)
T ss_pred EEecCCCCCCHH
Confidence 999999876663
No 115
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=7.9e-12 Score=115.05 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=101.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..||+++|..|||||||+-++. .+.+....-|.+..-.....+.+++.. .++.+|||+|+.+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfv-k~~F~e~~e~TIGaaF~tktv~~~~~~---------------ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFV-KDQFHENIEPTIGAAFLTKTVTVDDNT---------------IKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhh-hCccccccccccccEEEEEEEEeCCcE---------------EEEEEEEcCCccccc
Confidence 4799999999999999999999 544443333433333444556665533 468899999998877
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
+..+.+ +|+|+++|+|.|+.+.+ .+.+ ....
T Consensus 69 slapMY-------yRgA~AAivvYDit~~~----------------SF~~---------aK~W----------------- 99 (200)
T KOG0092|consen 69 SLAPMY-------YRGANAAIVVYDITDEE----------------SFEK---------AKNW----------------- 99 (200)
T ss_pred ccccce-------ecCCcEEEEEEecccHH----------------HHHH---------HHHH-----------------
Confidence 655444 78999999999974321 1111 0000
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
++.+.+..+ ..--+-+|.||. |+.+. +....++.+.++++.|..|+
T Consensus 100 -------vkeL~~~~~------------------------~~~vialvGNK~--DL~~~-R~V~~~ea~~yAe~~gll~~ 145 (200)
T KOG0092|consen 100 -------VKELQRQAS------------------------PNIVIALVGNKA--DLLER-REVEFEEAQAYAESQGLLFF 145 (200)
T ss_pred -------HHHHHhhCC------------------------CCeEEEEecchh--hhhhc-ccccHHHHHHHHHhcCCEEE
Confidence 010100000 111234589998 46553 36678899999999999999
Q ss_pred EechhhhHHhcC
Q 012870 296 TISAQVEAELTE 307 (454)
Q Consensus 296 ~iSA~~E~~l~~ 307 (454)
.+|||...++.+
T Consensus 146 ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 146 ETSAKTGENVNE 157 (200)
T ss_pred EEecccccCHHH
Confidence 999999877744
No 116
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.34 E-value=3.7e-12 Score=114.52 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=83.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|||||||+|+|+++.... ...|.++.+.....+.+++. ...+.+|||||..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~---------------~~~~~i~D~~G~~~~~~ 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDT---------------TVKFEIWDTAGQERYRS 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCE---------------EEEEEEEeCCchHHHHH
Confidence 689999999999999999999554322 22332222222333444321 24688999999643221
Q ss_pred cccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
.....++++|++++|+|+++.. +++.+.|+.|....... +.+...
T Consensus 66 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--------~~~~~~ 130 (163)
T cd01860 66 -------LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV--------STEEAQ 130 (163)
T ss_pred -------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcC--------CHHHHH
Confidence 1122467899999999987632 23445566664321100 111111
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
+...... ....++||+++.|+.++++.+.+.+
T Consensus 131 ~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 131 EYADENG--LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1111111 2234489999999999999988765
No 117
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.34 E-value=1.4e-11 Score=115.21 Aligned_cols=83 Identities=22% Similarity=0.216 Sum_probs=54.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCC---------------CcccccceeeeeeeCCCccchhcccccCccccCc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANF---------------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~---------------p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~ 121 (454)
.+|+++|.+|||||||+|+|++........+ .++|.+.....+... ..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 65 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-----------------DT 65 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-----------------CE
Confidence 4799999999999999999995222211111 233333332222222 35
Q ss_pred eeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
++.+|||||..+.. ......++.+|++++|+|+++
T Consensus 66 ~~~l~DtpG~~~~~-------~~~~~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 66 KINIVDTPGHADFG-------GEVERVLSMVDGVLLLVDASE 100 (194)
T ss_pred EEEEEECCCcHHHH-------HHHHHHHHhcCEEEEEEECCC
Confidence 68999999985422 223445789999999999853
No 118
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.33 E-value=2.6e-11 Score=109.76 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=54.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.||||||||++++.++ .. ...++.++.......+.+... ..++.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK-RF-IGEYDPNLESLYSRQVTIDGE---------------QVSLEILDTAGQQQADT- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhC-cc-ccccCCChHHhceEEEEECCE---------------EEEEEEEECCCCccccc-
Confidence 5899999999999999999843 22 344555543333333333321 24688999999864211
Q ss_pred ccccccccccchhccceEEEEEeccC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
......++.+|++++|+|+++
T Consensus 63 -----~~~~~~~~~~d~~i~v~d~~~ 83 (165)
T cd04146 63 -----EQLERSIRWADGFVLVYSITD 83 (165)
T ss_pred -----chHHHHHHhCCEEEEEEECCC
Confidence 112334678999999999853
No 119
>PTZ00369 Ras-like protein; Provisional
Probab=99.33 E-value=1.1e-11 Score=115.52 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.||||||||++++.++. .. ..+..|+.+.....+.+++. ...+.+|||||.....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNH-FI-DEYDPTIEDSYRKQCVIDEE---------------TCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CC-cCcCCchhhEEEEEEEECCE---------------EEEEEEEeCCCCccch
Confidence 4899999999999999999999543 22 22222222222333344432 1358899999985433
Q ss_pred CcccccccccccchhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. +. ...++.+|++++|+|+++
T Consensus 68 ~----l~---~~~~~~~d~iilv~D~s~ 88 (189)
T PTZ00369 68 A----MR---DQYMRTGQGFLCVYSITS 88 (189)
T ss_pred h----hH---HHHhhcCCEEEEEEECCC
Confidence 2 21 234678999999999754
No 120
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.33 E-value=8.9e-12 Score=112.81 Aligned_cols=139 Identities=15% Similarity=0.137 Sum_probs=80.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.||||||||++++.++. ......|....+.....+.++.. ...+.+|||||......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGK---------------TILVDFWDTAGQERFQT 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCchhhhh
Confidence 489999999999999999999443 32221121111111111222211 24688999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC-------------------cceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~-------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
.....++++|++++|+|+++. .+++.+.|+.|.... .. +.
T Consensus 65 -------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~~------------~~ 123 (161)
T cd04124 65 -------MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--VT------------QK 123 (161)
T ss_pred -------hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--HH------------HH
Confidence 222346789999999998763 234455566553211 00 00
Q ss_pred HHHHHHh-cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 198 RMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 198 ~~~~~~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
....... ..+...+||+++.|+.++++.+.+...+
T Consensus 124 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 124 KFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 0010111 1122348999999999999988776543
No 121
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.33 E-value=2.3e-11 Score=116.63 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=51.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCccc-ccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT-~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
+||+++|.||||||||+++++++.. ....++.+. .+.....+.+... ..++.+|||||...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~-- 62 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEY-DDHAYDASGDDDTYERTVSVDGE---------------ESTLVVIDHWEQEM-- 62 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCc-CccCcCCCccccceEEEEEECCE---------------EEEEEEEeCCCcch--
Confidence 4899999999999999999984332 212222211 1333333444321 25689999999851
Q ss_pred Ccccccccccccchh-ccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIR-EVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir-~aD~il~VvD~~~ 163 (454)
.+...+ ++ .+|++++|+|+++
T Consensus 63 ----~~~~~~---~~~~ad~iilV~d~td 84 (221)
T cd04148 63 ----WTEDSC---MQYQGDAFVVVYSVTD 84 (221)
T ss_pred ----HHHhHH---hhcCCCEEEEEEECCC
Confidence 111122 34 8999999999854
No 122
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.32 E-value=6.6e-12 Score=114.89 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=82.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccC--------------CCCcccccceeeeeeeCCCccchhcccccCccccCcee
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs--------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i 123 (454)
.|++||.+|||||||+|+|++...+... ...++|..+....+.+. +...-..++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~------------~~~~~~~~~ 69 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYK------------AKDGQEYLL 69 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEe------------cCCCCcEEE
Confidence 5899999999999999999953221100 01123333222222221 000013568
Q ss_pred EEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhh
Q 012870 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLEL 187 (454)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el 187 (454)
.||||||+.+... .....++.+|++++|+|+++. .+++.+.|+.|.....
T Consensus 70 ~l~Dt~G~~~~~~-------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~------- 135 (179)
T cd01890 70 NLIDTPGHVDFSY-------EVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD------- 135 (179)
T ss_pred EEEECCCChhhHH-------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC-------
Confidence 8999999964322 233457889999999998763 1345566777643210
Q ss_pred hcccHHHHHHHHHHHHhcc--cCCCccccchHHHHHHHHHHHHhhh
Q 012870 188 VFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 188 ~l~d~~~l~~~~~~~~~~~--~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.......+....... ...++||++|.|+.++++.+.+.++
T Consensus 136 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 136 ----PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ----HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 000111111111111 1235899999999999999887764
No 123
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.32 E-value=2.3e-11 Score=110.98 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=51.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|||||||+|+++.+. ...... .|.........+.... ....+.+|||||......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE-FEKKYV--ATLGVEVHPLDFHTNR-------------GKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCC--CceeeEEEEEEEEECC-------------EEEEEEEEECCCChhhcc
Confidence 489999999999999999998432 222212 2322222222221100 024689999999854322
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+.+. .++.+|++++|+|++
T Consensus 65 ----~~~~---~~~~~d~~i~v~d~~ 83 (166)
T cd00877 65 ----LRDG---YYIGGQCAIIMFDVT 83 (166)
T ss_pred ----ccHH---HhcCCCEEEEEEECC
Confidence 2222 356899999999975
No 124
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.32 E-value=1.1e-11 Score=113.23 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=54.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|.+|||||||++++++. .......|..+.+.....+.++.. ...+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG-RFPERTEATIGVDFRERTVEIDGE---------------RIKVQLWDTAGQERFRK 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-CCCCccccceeEEEEEEEEEECCe---------------EEEEEEEeCCChHHHHH
Confidence 69999999999999999999943 333333333333333444444432 24689999999743221
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.+ .-..++++|++++|+|++
T Consensus 67 ---~~---~~~~~~~~d~~i~v~d~~ 86 (170)
T cd04115 67 ---SM---VQHYYRNVHAVVFVYDVT 86 (170)
T ss_pred ---hh---HHHhhcCCCEEEEEEECC
Confidence 11 122357899999999974
No 125
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.31 E-value=4.6e-12 Score=111.85 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=47.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||++||.||||||||+|+|++.... ++ .|. .+.+. -.+|||||.....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~--------------------~~~iDt~G~~~~~-- 49 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYN--------------------DGAIDTPGEYVEN-- 49 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEc--------------------CeeecCchhhhhh--
Confidence 7999999999999999999955321 11 111 11111 2589999983111
Q ss_pred ccccccccccchhccceEEEEEeccCC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
..+.......+++||++++|+|+++.
T Consensus 50 -~~~~~~~~~~~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 50 -RRLYSALIVTAADADVIALVQSATDP 75 (142)
T ss_pred -HHHHHHHHHHhhcCCEEEEEecCCCC
Confidence 11112222457899999999998543
No 126
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.31 E-value=7.7e-12 Score=114.47 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=80.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|++....... .|.......+.+. ...+.+|||||...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~----~t~g~~~~~~~~~-----------------~~~l~l~D~~G~~~ 70 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTIS----PTLGFQIKTLEYE-----------------GYKLNIWDVGGQKT 70 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEEC-----------------CEEEEEEECCCCHH
Confidence 34589999999999999999999965322111 1222222223222 24689999999853
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
... .....++.+|++++|+|+++. .+++.+.|+.|..... ..
T Consensus 71 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~ 133 (173)
T cd04154 71 LRP-------YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL----------SE 133 (173)
T ss_pred HHH-------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC----------CH
Confidence 221 223446789999999998763 1345556666643211 11
Q ss_pred HHHHHHHHHH---HhcccCCCccccchHHHHHHHHHHH
Q 012870 193 DQIEKRMEKL---KKGKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 193 ~~l~~~~~~~---~~~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
+.+...+... ....+...+||++|.|+.++++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 134 EEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 1112111110 0111223489999999999888764
No 127
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.31 E-value=5.9e-12 Score=114.01 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=86.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..+|+++|.+|||||||+++|++ ........|+.+.+.....+.+.+.. ..+.+|||||.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~ 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQ-GLFPPGQGATIGVDFMIKTVEIKGEK---------------IKLQIWDTAGQERFR 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHh-CCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCCcHHHH
Confidence 47999999999999999999994 33333444555555555555554321 358899999974322
Q ss_pred CcccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
. .....++.+|++++|+|+++.. +++.+.|+.|.....++. ...
T Consensus 71 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~---------~~~ 134 (169)
T cd04114 71 S-------ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS---------QQR 134 (169)
T ss_pred H-------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC---------HHH
Confidence 2 1123467899999999987522 234455666632211110 001
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.+.+.+... .....+||+++.|+.++++.+.+.+
T Consensus 135 ~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 135 AEEFSDAQD-MYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 111111111 1223489999999999999887643
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.31 E-value=4.6e-12 Score=117.70 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=86.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+++|.+|||||||+|+|+++....+ .+|..++...+.+. +.++.+|||||....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~~~ 74 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIG-----------------NIKFTTFDLGGHQQA 74 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 348999999999999999999996543222 34556666655544 256899999998532
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCC--hhHHHhHhhhccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKS--DVDVINLELVFSD 191 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~--di~~l~~el~l~d 191 (454)
.. .+...++++|++++|+|+++. .+++.+.|+.|... +.+.+.+.+.+.+
T Consensus 75 ~~-------~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~ 147 (184)
T smart00178 75 RR-------LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTN 147 (184)
T ss_pred HH-------HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCc
Confidence 21 223456789999999998763 24566777777432 1222222221111
Q ss_pred HHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHH
Q 012870 192 LDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 192 ~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.. ....... +...-.++||+++.|+.++++.+.+
T Consensus 148 ~~---~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 148 TT---GSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cc---ccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00 0000000 0011234899999999998887754
No 129
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.31 E-value=8.2e-12 Score=112.49 Aligned_cols=141 Identities=20% Similarity=0.200 Sum_probs=82.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCccc-ccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT-~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
+||+++|.+|||||||+++|.++......++..++ .+.....+.+++.. ..++.+|||||.....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDN--------------TVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCC--------------EEEEEEEECCCHHHHH
Confidence 48999999999999999999843322233343333 23322333333211 2569999999974322
Q ss_pred CcccccccccccchhccceEEEEEeccCC-------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~-------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
.+.. ..++++|++++|+|.++. .+++.+.|+.|...+.++ ...
T Consensus 67 ----~~~~---~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--------~~~--- 128 (164)
T cd04101 67 ----DMVS---NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEV--------TDA--- 128 (164)
T ss_pred ----HHHH---HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCC--------CHH---
Confidence 1222 345789999999998763 234555566664322110 000
Q ss_pred HHHHHHHhc--ccCCCccccchHHHHHHHHHHHHhh
Q 012870 197 KRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 197 ~~~~~~~~~--~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
....+... .+...+||+++.|+.++++.+.+.+
T Consensus 129 -~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 129 -QAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred -HHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 00111111 1223489999999999998887653
No 130
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.31 E-value=8.7e-12 Score=117.30 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=86.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||++++.+. .......|..+.+.....+.+++. ...+.+|||||....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN-TFSGSYITTIGVDFKIRTVEINGE---------------RVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCCCcCccccceeEEEEEEECCE---------------EEEEEEEeCCCchhH
Confidence 4589999999999999999999943 332233333333333333333321 135889999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCc-------------------ceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN-------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~-------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
.. .....++++|++++|+|+++.. +++.+.|+.|......+ +.+..
T Consensus 69 ~~-------~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~--------~~~~~ 133 (199)
T cd04110 69 RT-------ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV--------ETEDA 133 (199)
T ss_pred HH-------HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc--------CHHHH
Confidence 22 2234467899999999987632 34556666664321111 11111
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+...... .+...+||+++.|+.++++.+.+.+.
T Consensus 134 ~~~~~~~~--~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 134 YKFAGQMG--ISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHHHHcC--CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 11111111 12234899999999999998877664
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.31 E-value=4.8e-12 Score=110.95 Aligned_cols=90 Identities=24% Similarity=0.217 Sum_probs=60.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||+|||||+|+|++.. ...+..|++|.+.....+..++.. .++.+|||||......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCcccchH
Confidence 689999999999999999999555 778888999988777666655311 4588999999654433
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
............+..+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~ 91 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVE 91 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhh
Confidence 22111222223334455555555543
No 132
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=113.19 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=106.3
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
.+..+||.|.|.+|||||||+|.++ .....-..+.....|.....+.+++.. ..+++|||+|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv-~~kF~~qykaTIgadFltKev~Vd~~~---------------vtlQiWDTAGQE 69 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYV-NKKFSQQYKATIGADFLTKEVQVDDRS---------------VTLQIWDTAGQE 69 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHH-HHHHHHHhccccchhheeeEEEEcCeE---------------EEEEEEecccHH
Confidence 3567899999999999999999999 444444444445556666667777533 579999999998
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcc
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vS 212 (454)
+..+.+ -. .+|.||.+++|.|+....+ .+.++...+|+. ..
T Consensus 70 RFqsLg----~a---FYRgaDcCvlvydv~~~~S----------fe~L~~Wr~EFl--------------~q-------- 110 (210)
T KOG0394|consen 70 RFQSLG----VA---FYRGADCCVLVYDVNNPKS----------FENLENWRKEFL--------------IQ-------- 110 (210)
T ss_pred Hhhhcc----cc---eecCCceEEEEeecCChhh----------hccHHHHHHHHH--------------Hh--------
Confidence 877643 23 3789999999999743221 111211111110 00
Q ss_pred ccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhc-C
Q 012870 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL-Q 291 (454)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~-~ 291 (454)
.-+. .| ...|.+++.||.+-+-... +....++.+.||..+ +
T Consensus 111 ----------------a~~~----~P-----------------e~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 111 ----------------ASPQ----DP-----------------ETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGN 152 (210)
T ss_pred ----------------cCCC----CC-----------------CcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCC
Confidence 0000 11 4789999999985432111 255778899999866 5
Q ss_pred CcEEEechhhhHHh
Q 012870 292 SGRVTISAQVEAEL 305 (454)
Q Consensus 292 ~~~v~iSA~~E~~l 305 (454)
+|+..+|||--.++
T Consensus 153 ipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 153 IPYFETSAKEATNV 166 (210)
T ss_pred ceeEEecccccccH
Confidence 89999999976655
No 133
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.30 E-value=2.4e-11 Score=111.63 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=53.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|.+|||||||++++.++. ... .+..|+.+.....+.+++. ...+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~-f~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS-FPD-YHDPTIEDAYKQQARIDNE---------------PALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCC-CcCCcccceEEEEEEECCE---------------EEEEEEEeCCCchhhHH
Confidence 689999999999999999999443 322 2222222222223333321 24689999999854332
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+. ...++.+|++++|+|+++
T Consensus 66 ----l~---~~~~~~~d~~ilv~d~~~ 85 (172)
T cd04141 66 ----MR---DQYMRCGEGFIICYSVTD 85 (172)
T ss_pred ----Hh---HHHhhcCCEEEEEEECCc
Confidence 22 234678999999999754
No 134
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.29 E-value=1.7e-11 Score=113.76 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=84.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..+|+++|.+|||||||+++++++.. +...|+.+.+.....+.+.+.. ..++.+|||||.....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSK--------------GITFHFWDVGGQEKLR 66 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCC--------------ceEEEEEECCCcHhHH
Confidence 47999999999999999999995443 2334544333322223221100 3569999999974322
Q ss_pred CcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
. .+...+++||++++|+|+++. .+++.+.|+.|...+. ..+.
T Consensus 67 ~-------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~----------~~~~ 129 (183)
T cd04152 67 P-------LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL----------SVSE 129 (183)
T ss_pred H-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC----------CHHH
Confidence 1 223346789999999998763 2345555666533211 1111
Q ss_pred HHHHHHHHHhcc-----cCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEKLKKGK-----AKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~~~~~~-----~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
++..+. +.... +..++||+++.|+.++++.+.+.+.
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 130 VEKLLA-LHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred HHHHhC-ccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 111111 11111 1234899999999999998887774
No 135
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.4e-11 Score=113.61 Aligned_cols=144 Identities=21% Similarity=0.145 Sum_probs=105.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.|+.++|..+||||||+++.. .+.+.-...|...+|.....+.+.|.. ..+++|||+|+.+..+
T Consensus 23 ~KlVflGdqsVGKTslItRf~-yd~fd~~YqATIGiDFlskt~~l~d~~---------------vrLQlWDTAGQERFrs 86 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFM-YDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS 86 (221)
T ss_pred EEEEEEccCccchHHHHHHHH-HhhhcccccceeeeEEEEEEEEEcCcE---------------EEEEEEecccHHHHhh
Confidence 799999999999999999999 777777777888888888888887743 5799999999987766
Q ss_pred cccccccccccchhccceEEEEEeccCCc---------------------ceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
..+ +.+|++.+++.|.|..+.. -+..|.|+.|....-++...| -
T Consensus 87 lip-------sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE--------g 151 (221)
T KOG0094|consen 87 LIP-------SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE--------G 151 (221)
T ss_pred hhh-------hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH--------H
Confidence 332 3489999999999987622 245667777766443332221 1
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
++.-..+.. ..-.+||+.|.|+..++.+|...|++.
T Consensus 152 ~~kAkel~a--~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 152 ERKAKELNA--EFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHhCc--EEEEecccCCCCHHHHHHHHHHhccCc
Confidence 111111111 112389999999999999999999864
No 136
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.29 E-value=2.5e-11 Score=110.55 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=82.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|+|||||+|+++++. .. .++..++.+.....+.+++.. ..+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA-FP-EEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDR 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CC-CCCCCceeeeeEEEEEECCEE---------------EEEEEEeCCCcccccc
Confidence 489999999999999999999543 22 223333333333334444321 3478999999855332
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhh----cccH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV----FSDL 192 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~----l~d~ 192 (454)
. .. ..++.+|++++|+|+.+. .+++.+.|+.|...+-........ ....
T Consensus 64 ~----~~---~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 136 (174)
T cd04135 64 L----RP---LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTV 136 (174)
T ss_pred c----cc---ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCH
Confidence 1 11 125689999999997653 234556677664332211111000 0111
Q ss_pred HHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHh
Q 012870 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
+........+. ..+...+||+++.|+.++++.+.+.
T Consensus 137 ~~~~~~~~~~~-~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 137 EQGQKLAKEIG-AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHHHHHcC-CCEEEEecCCcCCCHHHHHHHHHHH
Confidence 11111111111 0112348999999999999887653
No 137
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.29 E-value=1e-11 Score=113.97 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=86.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||++||.+|||||||++++.+ ........|..+.+.....+.+.+. ..++.+|||||..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~-~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK-DVFDKNYKATIGVDFEMERFEILGV---------------PFSLQLWDTAGQERFKC- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEeCCChHHHHh-
Confidence 799999999999999999994 4444333444444444444444432 24699999999854322
Q ss_pred ccccccccccchhccceEEEEEeccCCc---------------------ceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
.....+++||++++|+|+++.. +++.+.|+.|....... ...+
T Consensus 65 ------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~----------~~~~ 128 (170)
T cd04108 65 ------IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY----------ALME 128 (170)
T ss_pred ------hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccc----------cccH
Confidence 1234477899999999987621 24456666663221110 0001
Q ss_pred HHHHHHHhc--ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 197 KRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 197 ~~~~~~~~~--~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.....+.+. .+...+||+++.|+.++++.+.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 129 QDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 111111111 112348999999999999988877643
No 138
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.29 E-value=1.4e-11 Score=113.27 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=82.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..+|+++|.+|||||||+++|+++.... . ..|..++...+.+. ..++.+|||||...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~--~~t~~~~~~~~~~~-----------------~~~~~l~D~~G~~~-- 71 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--T--SPTIGSNVEEIVYK-----------------NIRFLMWDIGGQES-- 71 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--c--CCccccceEEEEEC-----------------CeEEEEEECCCCHH--
Confidence 4799999999999999999998544332 2 23434444444443 25699999999843
Q ss_pred CcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
+...+...++.||++++|+|+++. .+++.+.|+.|..... +.+.
T Consensus 72 -----~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~----------~~~~ 136 (174)
T cd04153 72 -----LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM----------TPAE 136 (174)
T ss_pred -----HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC----------CHHH
Confidence 222334457899999999998753 2345556666643211 1111
Q ss_pred HHHHHH--HHH-hcccCCCccccchHHHHHHHHHHH
Q 012870 195 IEKRME--KLK-KGKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 195 l~~~~~--~~~-~~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
+.+.+. ... ...+..++||+++.|++++++.+.
T Consensus 137 i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 137 ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred HHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 111111 000 011123589999999999988764
No 139
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.29 E-value=1.4e-11 Score=114.27 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=87.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+++|.+|||||||+|+|++.... ....|..+..+.+.+++ ..+.+|||||....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~----~~~~T~~~~~~~i~~~~-----------------~~~~l~D~~G~~~~ 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA----QHVPTLHPTSEELTIGN-----------------IKFKTFDLGGHEQA 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc----ccCCccCcceEEEEECC-----------------EEEEEEECCCCHHH
Confidence 3579999999999999999999954432 12346666666666553 46889999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
. ..+...++.+|++++|+|+++. .+++.+.|+.|..... +.+
T Consensus 77 ~-------~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~----------~~~ 139 (190)
T cd00879 77 R-------RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV----------SEE 139 (190)
T ss_pred H-------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc----------CHH
Confidence 1 1223456789999999998752 2456666777743211 111
Q ss_pred HHHHHHHHHH--------------hcccCCCccccchHHHHHHHHHHHHhh
Q 012870 194 QIEKRMEKLK--------------KGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 194 ~l~~~~~~~~--------------~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.+...+.... ......++||+++.|+.++++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1111111000 001123479999999999999886653
No 140
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.28 E-value=6.8e-11 Score=108.52 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=53.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+|+|.||||||||++++++. ..... ++.++.+.....+.++.. ...+.+|||||..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~-~~~~~-~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG-HFVES-YYPTIENTFSKIIRYKGQ---------------DYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-CCccc-cCcchhhhEEEEEEECCE---------------EEEEEEEECCChHhhHH
Confidence 58999999999999999999943 33333 333444433444443321 13578999999854321
Q ss_pred cccccccccccchhccceEEEEEecc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+. -.....+|++++|+|++
T Consensus 65 ----~~---~~~~~~~~~~i~v~d~~ 83 (180)
T cd04137 65 ----LP---QKYSIGIHGYILVYSVT 83 (180)
T ss_pred ----HH---HHHHhhCCEEEEEEECC
Confidence 11 12356799999999974
No 141
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=2.8e-11 Score=110.82 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=85.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCccc-ccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT-~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+++++++. ..+.++..|+ .+.....+.+++.. ..+.+|||+|...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~---------------~~l~~~d~~g~~~ 66 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQE---------------KYLILREVGEDEV 66 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeE---------------EEEEEEecCCccc
Confidence 45799999999999999999999543 3323343333 22233344444321 3588999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
... .....+++||++++|+|+++.. +++.+.|+.|...+.... ....+.+
T Consensus 67 ~~~-------~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~-----~~~~~~~ 134 (169)
T cd01892 67 AIL-------LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRY-----EVQPDEF 134 (169)
T ss_pred ccc-------cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccccc-----ccCHHHH
Confidence 322 1122357899999999987632 345555666643221110 0011111
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+ .+ .......+||+++.|+.++++.+.+.+-
T Consensus 135 ~~---~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 135 CR---KL-GLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HH---Hc-CCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 11 11 1111234899999999999998877653
No 142
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.27 E-value=1.7e-11 Score=110.26 Aligned_cols=133 Identities=19% Similarity=0.218 Sum_probs=79.7
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.||||||||+|+|+.+... ...| |...+...+... +.++.+|||||.....
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~-- 57 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYK-----------------NLKFQVWDLGGQTSIR-- 57 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEEC-----------------CEEEEEEECCCCHHHH--
Confidence 6899999999999999999844332 2222 333333333322 3569999999985322
Q ss_pred ccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
..+...++.+|++++|+|+++. .+++.+.|+.|..+.. ....+.
T Consensus 58 -----~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~----------~~~~i~ 122 (158)
T cd04151 58 -----PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL----------SEAEIS 122 (158)
T ss_pred -----HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC----------CHHHHH
Confidence 1223446789999999998652 2455566666643211 011111
Q ss_pred HHHHHHH---hcccCCCccccchHHHHHHHHHHHH
Q 012870 197 KRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 197 ~~~~~~~---~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
..+.... ...+..++||+++.|+.++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 123 EKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 1111000 0012345899999999999887753
No 143
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.27 E-value=2.4e-11 Score=113.06 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=85.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCccccc-ceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE-PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~-~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
+||+++|.||||||||+|++++ .....+++..|+.. .....+.+++.. ..+.+|||||.....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~ 64 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH-HRFLVGPYQNTIGAAFVAKRMVVGERV---------------VTLGIWDTAGSERYE 64 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh-CCcCCcCcccceeeEEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 4899999999999999999994 44444334333322 222334444322 357899999984332
Q ss_pred CcccccccccccchhccceEEEEEeccCC-------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~-------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
. +.. ..++.+|++++|+|+++. .+++.+.|+.|....-.. ......+.+.
T Consensus 65 ~----~~~---~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~----~~~v~~~~~~ 133 (193)
T cd04118 65 A----MSR---IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS----LRQVDFHDVQ 133 (193)
T ss_pred h----hhH---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc----cCccCHHHHH
Confidence 2 211 235689999999998652 245566677774321100 0000111111
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+..... ..+...+||+++.++.++++.+.+.+-
T Consensus 134 ~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 134 DFADEI--KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111 011234899999999999998877663
No 144
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.27 E-value=9.5e-12 Score=113.92 Aligned_cols=135 Identities=14% Similarity=0.187 Sum_probs=80.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+++|+.+.. ....|.++.+ ...+... ..++.+|||||..+.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~--~~~~~t~g~~--~~~~~~~-----------------~~~~~l~Dt~G~~~~ 66 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVGFN--VETVTYK-----------------NVKFNVWDVGGQDKI 66 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC--ccccCCcccc--eEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 357999999999999999999984432 2223433322 2222222 356999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....+++||++++|+|+++. .+++.+.|+.|..... ..+
T Consensus 67 ~~-------~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~ 129 (168)
T cd04149 67 RP-------LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM----------KPH 129 (168)
T ss_pred HH-------HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC----------CHH
Confidence 22 122346789999999998873 2345566666643210 111
Q ss_pred HHHHHHH--HHHh-cccCCCccccchHHHHHHHHHHH
Q 012870 194 QIEKRME--KLKK-GKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 194 ~l~~~~~--~~~~-~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
.+...+. +... .....++||++|.|+.++++.+.
T Consensus 130 ~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 130 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred HHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 1121111 1110 01123489999999999888664
No 145
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.26 E-value=1.7e-11 Score=111.60 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=81.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|++....... .|...+...+... +..+.+|||||...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~-----------------~~~~~~~D~~G~~~ 70 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSD-----------------GFKLNVWDIGGQRA 70 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEEC-----------------CEEEEEEECCCCHH
Confidence 44689999999999999999999965332221 1222222233333 24689999999743
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCCh--hHHHhHhhhcc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFS 190 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~d--i~~l~~el~l~ 190 (454)
. ...+...++.+|++++|+|+++. .++..+.|+.|.... ...+.+++.+.
T Consensus 71 ~-------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~ 143 (173)
T cd04155 71 I-------RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH 143 (173)
T ss_pred H-------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc
Confidence 1 12223446789999999998752 234555667664322 11111111100
Q ss_pred cHHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHH
Q 012870 191 DLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 191 d~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+. +..+..++||++|.|+.++++.+.+
T Consensus 144 ----------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 144 ----------DLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ----------ccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 000 0001124899999999999887753
No 146
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.26 E-value=6.6e-12 Score=116.12 Aligned_cols=59 Identities=31% Similarity=0.472 Sum_probs=49.9
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
....++|+++|.||||||||+|+|+|...+.+++.|++|++.+...+ . .++.++||||+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~------------------~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--D------------------KKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--C------------------CCEEEEECcCC
Confidence 34458999999999999999999998888899999999987655443 1 35999999996
No 147
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.26 E-value=2.9e-11 Score=110.04 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=81.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||||||||+++++++. .. ..++.++.+.....+.++.. ...+.+|||||..+...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV-FI-ESYDPTIEDSYRKQVEIDGR---------------QCDLEILDTAGTEQFTA 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CC-cccCCcchheEEEEEEECCE---------------EEEEEEEeCCCcccchh
Confidence 689999999999999999999443 32 22333333332333333321 14588999999865433
Q ss_pred cccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
+... .++.+|++++|+|+++. .+++.+.|+.|........ .+..
T Consensus 65 ----~~~~---~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~--------~~~~ 129 (168)
T cd04177 65 ----MREL---YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS--------REDG 129 (168)
T ss_pred ----hhHH---HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC--------HHHH
Confidence 2222 35679999999997652 2344556666632211110 0000
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
....... ...+...+||+++.|+.++++.+.+.+
T Consensus 130 ~~~~~~~-~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 130 VSLSQQW-GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHc-CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1101111 111223489999999999998886644
No 148
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.26 E-value=1.3e-11 Score=109.96 Aligned_cols=138 Identities=15% Similarity=0.116 Sum_probs=86.5
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.||||||||+|+|++.. ..+.++.+|.+.....+..+.. ...+.+||+||......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~- 62 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGE---------------TYTLDILDTAGQEEFSA- 62 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCE---------------EEEEEEEECCChHHHHH-
Confidence 68999999999999999999544 4555666666655555544421 24689999999754221
Q ss_pred ccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
.....++.+|++++|+|..+. .++..+.|+.|....... ..+.+.
T Consensus 63 ------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------~~~~~~ 128 (160)
T cd00876 63 ------MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQV--------SKEEGK 128 (160)
T ss_pred ------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccccee--------cHHHHH
Confidence 122346789999999997652 344556677664421111 111111
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHh
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
....... .+...+|++++.++.++++.+.+.
T Consensus 129 ~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 129 ALAKEWG--CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHcC--CcEEEeccCCCCCHHHHHHHHHhh
Confidence 1111111 223458999999999999887653
No 149
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.26 E-value=2.4e-11 Score=108.97 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=80.4
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.+|||||||+|++++..... . ..|.......+.+. ...+.+|||||......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~--~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~- 58 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT--T--IPTIGFNVETVEYK-----------------NVSFTVWDVGGQDKIRP- 58 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC--C--CCCcCcceEEEEEC-----------------CEEEEEEECCCChhhHH-
Confidence 68999999999999999999655221 1 22333333333332 25699999999854322
Q ss_pred ccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
.+...++.+|++++|+|+++. .+++.+.|+.|..... ..+.+.
T Consensus 59 ------~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----------~~~~~~ 122 (158)
T cd00878 59 ------LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL----------SVSELI 122 (158)
T ss_pred ------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc----------CHHHHH
Confidence 223345789999999999763 2345566776643211 011111
Q ss_pred HHHHHH---HhcccCCCccccchHHHHHHHHHHHH
Q 012870 197 KRMEKL---KKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 197 ~~~~~~---~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
..+... ....+..++||++|.|+.++++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 123 EKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 111111 01112234899999999998887653
No 150
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.26 E-value=2.5e-11 Score=111.83 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||++++..+. . ....|.++ .....+..+ ..++.+|||||....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~-~-~~~~~t~~--~~~~~~~~~-----------------~~~l~l~D~~G~~~~ 70 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGE-S-VTTIPTIG--FNVETVTYK-----------------NISFTVWDVGGQDKI 70 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-C-CCcCCccc--cceEEEEEC-----------------CEEEEEEECCCChhh
Confidence 35899999999999999999997332 2 22233222 222223222 256999999998442
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....+++||++++|+|+++. .++..+.|+.|..... ..+
T Consensus 71 ~~-------~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~ 133 (175)
T smart00177 71 RP-------LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM----------KAA 133 (175)
T ss_pred HH-------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC----------CHH
Confidence 21 223346889999999998762 2345566776643211 111
Q ss_pred HHHHHHH--HHHhc-ccCCCccccchHHHHHHHHHHHHhh
Q 012870 194 QIEKRME--KLKKG-KAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 194 ~l~~~~~--~~~~~-~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.+...+. .+... ....++||++|.|+.++++.+.+.+
T Consensus 134 ~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 134 EITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1122111 01000 0112489999999999999886654
No 151
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.26 E-value=3.7e-11 Score=110.82 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=83.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||++||.+|||||||++++.. ........| |+.+.....+.+++. +.++.+|||||..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~-~~f~~~~~p-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT-NKFPSEYVP-TVFDNYAVTVMIGGE---------------PYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc-CCCCCCCCC-ceeeeeEEEEEECCE---------------EEEEEEEECCCccchhh
Confidence 5899999999999999999994 333322223 332222223333321 24689999999964332
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHHH-
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI- 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l- 195 (454)
+. ...++++|++++|+|+++. .+++.+.|+.|...+-..+.. +.......+
T Consensus 65 ----~~---~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~-l~~~~~~~v~ 136 (175)
T cd01874 65 ----LR---PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK-LAKNKQKPIT 136 (175)
T ss_pred ----hh---hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHH-hhhccCCCcC
Confidence 11 2246789999999998762 235566677664332221111 111100000
Q ss_pred HHHHHHHHhcc---cCCCccccchHHHHHHHHHHHH
Q 012870 196 EKRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 196 ~~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~ 228 (454)
....+.+.+.. ....+||++|.|+.++++.+..
T Consensus 137 ~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 137 PETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 01111121111 2234899999999999988765
No 152
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.26 E-value=9e-11 Score=112.73 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=51.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||+++++++. .. ...| |........... ...+.+|||||......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~-f~-~~~~--Tig~~~~~~~~~-----------------~~~l~iwDt~G~e~~~~ 59 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR-FK-DTVS--TVGGAFYLKQWG-----------------PYNISIWDTAGREQFHG 59 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CC-CCCC--ccceEEEEEEee-----------------EEEEEEEeCCCcccchh
Confidence 489999999999999999999543 32 1222 222221111111 24689999999854332
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+... .++.+|++++|+|+++
T Consensus 60 ----l~~~---~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 60 ----LGSM---YCRGAAAVILTYDVSN 79 (220)
T ss_pred ----hHHH---HhccCCEEEEEEECCC
Confidence 2222 3678999999999854
No 153
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.25 E-value=3.8e-11 Score=126.11 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=62.5
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccC------------------------------CCCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA------------------------------NFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs------------------------------~~p~tT~~~~~~~~~~~d 103 (454)
+..++|+++|.+|+|||||+|+|+....+... -.+++|++.....+..+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 34578999999999999999999843332211 15788888877776554
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.++.||||||..+. .......++.+|++++|+|+.+
T Consensus 83 ----------------~~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 83 ----------------KYYFTIVDCPGHRDF-------VKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred ----------------CeEEEEEECCCcccc-------hhhHhhchhcCCEEEEEEEccc
Confidence 357999999997432 2223344678999999999853
No 154
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.25 E-value=6.1e-11 Score=108.04 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.+|||||||+++++++ .......|... .... .++.. +.++.+|||||......
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~-~~~~~~~pt~g--~~~~--~i~~~---------------~~~l~i~Dt~G~~~~~~- 59 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSE-RSLESVVPTTG--FNSV--AIPTQ---------------DAIMELLEIGGSQNLRK- 59 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcC-CCcccccccCC--cceE--EEeeC---------------CeEEEEEECCCCcchhH-
Confidence 4899999999999999999943 33222223222 1111 12211 35799999999854322
Q ss_pred ccccccccccchhccceEEEEEeccC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.+...+++||++++|+|+++
T Consensus 60 ------~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 60 ------YWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred ------HHHHHHhhCCEEEEEEECCC
Confidence 22345789999999999753
No 155
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.25 E-value=6.4e-11 Score=107.97 Aligned_cols=148 Identities=18% Similarity=0.122 Sum_probs=83.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|||||||++++.++ .... .+..|+.+.....+.+++. ..++.+|||||......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~-~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD-QFPE-VYVPTVFENYVADIEVDGK---------------QVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC-CCCC-CCCCccccceEEEEEECCE---------------EEEEEEEeCCCchhhhh
Confidence 58999999999999999999943 3222 2222332332334444332 13589999999854322
Q ss_pred cccccccccccchhccceEEEEEeccC--------------------CcceEEecCccCCCChhHHHhHhhhc-ccHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVF-SDLDQI 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~--------------------~~~v~~v~~~~dp~~di~~l~~el~l-~d~~~l 195 (454)
+. ...++++|++++|+|+.+ +.+++.+.|+.|...+.... .++.. ......
T Consensus 65 ----~~---~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~i~~~~~~~v~ 136 (175)
T cd01870 65 ----LR---PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTR-RELAKMKQEPVK 136 (175)
T ss_pred ----cc---ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhh-hhhhhccCCCcc
Confidence 11 123578999999998764 22456667777743221111 11110 000000
Q ss_pred HHHHHHHHhcc---cCCCccccchHHHHHHHHHHHHh
Q 012870 196 EKRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 196 ~~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
......+.+.. ....+||++|.|+.++++.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 01111111111 12348999999999999988654
No 156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.25 E-value=2e-11 Score=109.48 Aligned_cols=134 Identities=20% Similarity=0.280 Sum_probs=78.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.||||||||+|++++..... ..| |.......+..+. ...+.+|||||....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~--t~~~~~~~~~~~~----------------~~~l~i~D~~G~~~~--- 57 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIP--TVGFNVEMLQLEK----------------HLSLTVWDVGGQEKM--- 57 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccC--ccCcceEEEEeCC----------------ceEEEEEECCCCHhH---
Confidence 58999999999999999999654332 222 2222223333221 246999999998432
Q ss_pred ccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
...+...++++|++++|+|+++. .+++.+.|+.|..... ..+.+.
T Consensus 58 ----~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~i~ 123 (160)
T cd04156 58 ----RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL----------TAEEIT 123 (160)
T ss_pred ----HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc----------CHHHHH
Confidence 22233457789999999998763 2345566666632110 011111
Q ss_pred HHHH--HHHh--cccCCCccccchHHHHHHHHHHHH
Q 012870 197 KRME--KLKK--GKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 197 ~~~~--~~~~--~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
..+. .+.. ..+..++||++|.|+.++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 124 RRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 1110 0100 001123799999999999987753
No 157
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.24 E-value=5.2e-11 Score=108.46 Aligned_cols=147 Identities=21% Similarity=0.199 Sum_probs=82.3
Q ss_pred EEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCcc
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (454)
|+|+|.+|||||||++++.++. ......| ++.+.....+.+++. ...+.+|||||......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~-- 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYSADVEVDGK---------------PVELGLWDTAGQEDYDR-- 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeeeEEEEECCE---------------EEEEEEEECCCCcccch--
Confidence 5799999999999999999543 3322223 222222222333321 24589999999854332
Q ss_pred cccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHHH-HH
Q 012870 139 EGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI-EK 197 (454)
Q Consensus 139 ~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l-~~ 197 (454)
+.. ..++.+|++++|+|+++. .+++.+.|+.|...+...... +.......+ ..
T Consensus 62 --~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~v~~~ 135 (174)
T smart00174 62 --LRP---LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRE-LSKQKQEPVTYE 135 (174)
T ss_pred --hch---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhh-hhcccCCCccHH
Confidence 111 235689999999998762 345667777775432221111 110000000 01
Q ss_pred HHHHHHhcc---cCCCccccchHHHHHHHHHHHHhh
Q 012870 198 RMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 198 ~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
....+.+.. +...+||+++.|+.++++.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 136 QGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 111122211 123489999999999998877654
No 158
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.24 E-value=2.1e-10 Score=112.01 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=55.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+++|.+|||||||+++++++ .... .+..|+.+.....+.+++.. .++.+|||||......
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~-~f~~-~y~pTi~d~~~k~~~i~~~~---------------~~l~I~Dt~G~~~~~~ 63 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGG-RFEE-QYTPTIEDFHRKLYSIRGEV---------------YQLDILDTSGNHPFPA 63 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcC-CCCC-CCCCChhHhEEEEEEECCEE---------------EEEEEEECCCChhhhH
Confidence 37999999999999999999843 3332 33334444444455544321 4688999999854321
Q ss_pred cccccccccccchhccceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+ ....++.+|++++|+|+++
T Consensus 64 ----~---~~~~~~~ad~iIlVfdv~~ 83 (247)
T cd04143 64 ----M---RRLSILTGDVFILVFSLDN 83 (247)
T ss_pred ----H---HHHHhccCCEEEEEEeCCC
Confidence 1 1123568999999999753
No 159
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.24 E-value=3e-11 Score=107.86 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=58.2
Q ss_pred EEEEEecCCCCCcHHHHHhhc-CCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE-NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg-~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+|+++|.+|||||||+|+|++ ......++.+++|.++..... ..++.+|||||+.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--------------------NDKFRLVDLPGYGYAKV 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--------------------cCeEEEecCCCcccccc
Confidence 489999999999999999994 445567777777765443222 12699999999854321
Q ss_pred c------ccccccccccchhccceEEEEEeccC
Q 012870 137 Q------GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 137 ~------~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. ...+...++.....++++++|+|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 93 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRH 93 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc
Confidence 1 11122334444456789999999864
No 160
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=6.2e-11 Score=113.54 Aligned_cols=86 Identities=17% Similarity=0.039 Sum_probs=53.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||++||.+|||||||+++++. ........|....+.....+..++. ...+.+|||||....
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~-~~f~~~~~~tig~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLT-GEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhh-CCCCCccCCccceeEEEEEEEECCe---------------EEEEEEEECCCchhh
Confidence 458999999999999999999873 3332222222222222222222221 246899999998554
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. +. ...++.+|++|+|+|+++
T Consensus 76 ~~----~~---~~~~~~~~~~ilvfD~~~ 97 (219)
T PLN03071 76 GG----LR---DGYYIHGQCAIIMFDVTA 97 (219)
T ss_pred hh----hh---HHHcccccEEEEEEeCCC
Confidence 32 11 223678999999999753
No 161
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.3e-11 Score=114.05 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=105.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||.|+|..|||||.|+-++. .....-+......+|.....+.+..++ ..+++|||+|+.+.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~-~~~f~e~~~sTIGVDf~~rt~e~~gk~---------------iKlQIWDTAGQERF 71 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFK-DDTFTESYISTIGVDFKIRTVELDGKT---------------IKLQIWDTAGQERF 71 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhc-cCCcchhhcceeeeEEEEEEeeecceE---------------EEEEeeeccccHHH
Confidence 45899999999999999999999 555555555555567777777776654 36999999999654
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
. ..+.+.+|+|++||+|.|+++..+ +.- +..
T Consensus 72 r-------tit~syYR~ahGii~vyDiT~~~S-------------F~~------------v~~----------------- 102 (205)
T KOG0084|consen 72 R-------TITSSYYRGAHGIIFVYDITKQES-------------FNN------------VKR----------------- 102 (205)
T ss_pred h-------hhhHhhccCCCeEEEEEEcccHHH-------------hhh------------HHH-----------------
Confidence 4 355677899999999999864221 100 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc-
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG- 293 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~- 293 (454)
-++.+.+.. ...-|.++|+||.| +.+. .....++.++++.+++.+
T Consensus 103 -------Wi~Ei~~~~------------------------~~~v~~lLVGNK~D--l~~~-~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 103 -------WIQEIDRYA------------------------SENVPKLLVGNKCD--LTEK-RVVSTEEAQEFADELGIPI 148 (205)
T ss_pred -------HHHHhhhhc------------------------cCCCCeEEEeeccc--cHhh-eecCHHHHHHHHHhcCCcc
Confidence 011110000 02358899999984 4443 245667888999999999
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
+.++|||.-.++
T Consensus 149 f~ETSAK~~~NV 160 (205)
T KOG0084|consen 149 FLETSAKDSTNV 160 (205)
T ss_pred eeecccCCccCH
Confidence 999999986655
No 162
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.23 E-value=3.3e-11 Score=113.18 Aligned_cols=149 Identities=14% Similarity=0.097 Sum_probs=90.8
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.+|||||||++++++... ...++.++.+.....+.+.+. ...+.+|||||......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGV---------------SLTLDILDTSGSYSFPA- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCE---------------EEEEEEEECCCchhhhH-
Confidence 689999999999999999995432 233444444443344444331 14588999999754322
Q ss_pred ccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
+. -..++.||++++|+|+++. .+++.+.|+.|.......+. .....
T Consensus 63 ---~~---~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~-------~~~~~ 129 (198)
T cd04147 63 ---MR---KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP-------AKDAL 129 (198)
T ss_pred ---HH---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc-------HHHHH
Confidence 11 1236789999999998762 34566777777543211110 11111
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCCCC
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~ 238 (454)
+... .....+...+||++|.|+.++++.+.+.+....+..+
T Consensus 130 ~~~~-~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 130 STVE-LDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred HHHH-hhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence 1110 0111112348999999999999999988875554444
No 163
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.23 E-value=5.4e-11 Score=108.13 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=80.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.+|||||||+|+|+++.. . ..+|.++ +.......+.+. ..++.+|||||.....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~-~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~-- 61 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-P-ENVPRVL-PEITIPADVTPE---------------RVPTTIVDTSSRPQDR-- 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-C-ccCCCcc-cceEeeeeecCC---------------eEEEEEEeCCCchhhh--
Confidence 899999999999999999995433 2 2344322 222111122211 2468999999974322
Q ss_pred ccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHH--HhHhhhcccHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDV--INLELVFSDLDQI 195 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~--l~~el~l~d~~~l 195 (454)
..+...++.+|++++|+|++++. +++.+.|+.|...+... ++. .+
T Consensus 62 -----~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~--------~~ 128 (166)
T cd01893 62 -----ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEE--------EM 128 (166)
T ss_pred -----HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHH--------HH
Confidence 12233467899999999987622 34555566664322111 001 01
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
...............+||+++.|+.++++.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 129 LPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 11111111111223489999999999999887755
No 164
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.23 E-value=3.5e-11 Score=108.97 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=78.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||++++..+.. . +..| |...+...+... ..++.+|||||..+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~-~~~p--t~g~~~~~~~~~-----------------~~~~~l~D~~G~~~~~- 58 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKIR- 58 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-c-ccCC--CCCcceEEEEEC-----------------CEEEEEEECCCCHhHH-
Confidence 5899999999999999999973332 2 2333 222323333332 3569999999984322
Q ss_pred cccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
..+...+++||++++|+|+++. .+++.+.|+.|...... .+.+
T Consensus 59 ------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i 122 (159)
T cd04150 59 ------PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS----------AAEV 122 (159)
T ss_pred ------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC----------HHHH
Confidence 1223457899999999998762 23555666766422110 0111
Q ss_pred HHHHH--HHH-hcccCCCccccchHHHHHHHHHHH
Q 012870 196 EKRME--KLK-KGKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 196 ~~~~~--~~~-~~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
...+. .+. +.....++||++|.|+.++++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 123 TDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred HHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 11110 000 000112479999999999988764
No 165
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.23 E-value=4.9e-11 Score=107.88 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=81.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|+|++.. ......|... +........++. ...+.+|||||......
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~---------------~~~l~~~D~~g~~~~~~ 63 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-FPTEYVPTVF-DNYSATVTVDGK---------------QVNLGLWDTAGQEEYDR 63 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcee-eeeEEEEEECCE---------------EEEEEEEeCCCcccccc
Confidence 589999999999999999999543 3233333221 222222222221 24589999999865322
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhH---hhhcccHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL---ELVFSDLD 193 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~---el~l~d~~ 193 (454)
+. ...++.+|++++|+|+++. .+++.+.|+.|.......... .......+
T Consensus 64 ----~~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~ 136 (171)
T cd00157 64 ----LR---PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPE 136 (171)
T ss_pred ----cc---hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHH
Confidence 11 1124689999999998761 345666677764322211100 00000111
Q ss_pred HHHHHHHHHHhcccCCCccccchHHHHHHHHHHHH
Q 012870 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 194 ~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.......... ..+...+|++++.|+.++++.+.+
T Consensus 137 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 137 EGEKLAKEIG-AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhC-CeEEEEeecCCCCCHHHHHHHHhh
Confidence 1111111111 112234899999999999987754
No 166
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.23 E-value=2.8e-11 Score=112.51 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=87.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||++++.++ .......|....+.....+.+++. ...+.+|||+|......
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~-~f~~~~~~T~g~~~~~~~i~~~~~---------------~~~l~iwDt~G~~~~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG-EFDEDYIQTLGVNFMEKTISIRGT---------------EITFSIWDLGGQREFIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCchhHHH
Confidence 48999999999999999999844 333333343333333334444432 24689999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCCcc-------------------eEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDND-------------------IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~~-------------------v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
+ .-..+++||++++|+|+++... .+.+.|+.|...+...- ....+.+
T Consensus 65 ----~---~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~-------~~~~~~~ 130 (182)
T cd04128 65 ----M---LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPE-------EQEEITK 130 (182)
T ss_pred ----h---hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccch-------hhhhhHH
Confidence 1 1234678999999999876321 13455666643211100 0000111
Q ss_pred HHHHHHhcc--cCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 198 RMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 198 ~~~~~~~~~--~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
....+.+.. +...+||++|.|+.++++.+.+.+.+-
T Consensus 131 ~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 131 QARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 112222221 223489999999999999988877643
No 167
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.23 E-value=7.5e-11 Score=107.89 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=82.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|+|||||++++.++ .. ..+++.|+.+.....+.++.. ..++.+|||||..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN-GY-PTEYVPTAFDNFSVVVLVDGK---------------PVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CC-CCCCCCceeeeeeEEEEECCE---------------EEEEEEEECCCChhhcc
Confidence 48999999999999999999843 33 334454544433333444321 24688999999854332
Q ss_pred cccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
. . -..++.+|++++|+|+++.. +++.+.|+.|...+...+..-+.......-.
T Consensus 64 ~----~---~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 136 (173)
T cd04130 64 L----R---PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQ 136 (173)
T ss_pred c----c---ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCH
Confidence 1 1 12357899999999987632 3455666666433222111000000000000
Q ss_pred HHHHHHHhcc---cCCCccccchHHHHHHHHHH
Q 012870 197 KRMEKLKKGK---AKDSQSKLKEDAEKAALEKI 226 (454)
Q Consensus 197 ~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i 226 (454)
.....+.+.. +..++||+++.|+.++++.+
T Consensus 137 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 137 SRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 1111111111 22348999999999998866
No 168
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.23 E-value=6e-11 Score=109.31 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=82.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|||||||+.++.+ ........| |+.+.....+.++.. ..++.+|||||......
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~-~~f~~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT-NAFPGEYIP-TVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc-CCCCCcCCC-cceeeeEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 5899999999999999999994 333222223 222221212222221 24688999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhc----ccH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVF----SDL 192 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l----~d~ 192 (454)
+.. ..++.+|++++|+|+++. .+++.+.|+.|...+...++..... ...
T Consensus 65 ----~~~---~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~ 137 (174)
T cd01871 65 ----LRP---LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 137 (174)
T ss_pred ----hhh---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCH
Confidence 112 235789999999998762 2455666777643221111110000 011
Q ss_pred HHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHh
Q 012870 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
+.......++. ..+...+||++|.|+.++++.+.+.
T Consensus 138 ~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 138 PQGLAMAKEIG-AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHHHHHHcC-CcEEEEecccccCCHHHHHHHHHHh
Confidence 11111111111 0112348999999999999887653
No 169
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.23 E-value=1.9e-11 Score=109.60 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=51.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.||||||||+++|++.... ...+. .|.......+... ...+.+|||||..+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~-~~~~~-~t~g~~~~~~~~~-----------------~~~~~l~Dt~G~~~~~~- 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQIIV-PTVGFNVESFEKG-----------------NLSFTAFDMSGQGKYRG- 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCC-cceec-CccccceEEEEEC-----------------CEEEEEEECCCCHhhHH-
Confidence 5899999999999999999954321 11111 2222222222221 35689999999854322
Q ss_pred ccccccccccchhccceEEEEEeccC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.....++.+|++++|+|+++
T Consensus 61 ------~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 61 ------LWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred ------HHHHHHccCCEEEEEEeCCc
Confidence 12234678999999999875
No 170
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.22 E-value=3.5e-11 Score=111.78 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=83.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+++|.+|||||||++++..+... ...| |...+...+... ...+.+|||||....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~--T~~~~~~~~~~~-----------------~~~~~l~D~~G~~~~ 74 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYK-----------------NLKFTMWDVGGQDKL 74 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--ccccceEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 4589999999999999999999733222 2223 323333333332 356999999998432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
. ......++++|++++|+|+++. .+++.+.|+.|..+... .+
T Consensus 75 ~-------~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~ 137 (182)
T PTZ00133 75 R-------PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS----------TT 137 (182)
T ss_pred H-------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC----------HH
Confidence 2 1223447889999999998752 24566667777432110 01
Q ss_pred HHHHHHH--HHHhc-ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 194 QIEKRME--KLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 194 ~l~~~~~--~~~~~-~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+...+. .+... .....+||++|.|+.++++.+.+.+.
T Consensus 138 ~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 138 EVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred HHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 1111111 00000 01123799999999999998876653
No 171
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.3e-10 Score=108.78 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=109.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|.+||.++||||+++-++. ...+..+......+|.....+.+++.+ ..+++|||+|+.+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~-d~~f~~~~~sTiGIDFk~kti~l~g~~---------------i~lQiWDtaGQer 73 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFS-DDSFNTSFISTIGIDFKIKTIELDGKK---------------IKLQIWDTAGQER 73 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhh-hccCcCCccceEEEEEEEEEEEeCCeE---------------EEEEEEEcccchh
Confidence 345899999999999999999999 666655555555567777777777643 4699999999965
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+. ..+-+.+|.|+.+++|+|..+...+. - +.+
T Consensus 74 f~-------ti~~sYyrgA~gi~LvyDitne~Sfe-------------n------------i~~---------------- 105 (207)
T KOG0078|consen 74 FR-------TITTAYYRGAMGILLVYDITNEKSFE-------------N------------IRN---------------- 105 (207)
T ss_pred HH-------HHHHHHHhhcCeeEEEEEccchHHHH-------------H------------HHH----------------
Confidence 43 35667789999999999985432210 0 111
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
-++.|.++-+ ..-|+++|.||.| +.+. +....+.-+++|.++|..
T Consensus 106 --------W~~~I~e~a~------------------------~~v~~~LvGNK~D--~~~~-R~V~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 106 --------WIKNIDEHAS------------------------DDVVKILVGNKCD--LEEK-RQVSKERGEALAREYGIK 150 (207)
T ss_pred --------HHHHHHhhCC------------------------CCCcEEEeecccc--cccc-ccccHHHHHHHHHHhCCe
Confidence 0111111111 2568899999985 4443 356678888999999999
Q ss_pred EEEechhhhHHhc
Q 012870 294 RVTISAQVEAELT 306 (454)
Q Consensus 294 ~v~iSA~~E~~l~ 306 (454)
|..+|||...++.
T Consensus 151 F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 151 FFETSAKTNFNIE 163 (207)
T ss_pred EEEccccCCCCHH
Confidence 9999999988773
No 172
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.21 E-value=7.1e-11 Score=109.68 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=84.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|.++|.+|||||||+++++.+... ...| |...+...+... ...+.+|||||..+.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~p--t~g~~~~~~~~~-----------------~~~~~i~D~~Gq~~~ 74 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cccC--CcceeEEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 4579999999999999999999843322 2223 222333233322 356999999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
...+...+++||++++|+|+++. .+++.+.|+.|..... ..+
T Consensus 75 -------~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~----------~~~ 137 (181)
T PLN00223 75 -------RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAA 137 (181)
T ss_pred -------HHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC----------CHH
Confidence 12233447889999999999862 2355566777632211 111
Q ss_pred HHHHHHHHHHhc----ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 194 QIEKRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 194 ~l~~~~~~~~~~----~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+.+.+. +... ....++||++|+|+.++++.+.+.+.
T Consensus 138 ~~~~~l~-l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 138 EITDKLG-LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred HHHHHhC-ccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 1222221 1110 01124799999999999998877654
No 173
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.21 E-value=8.5e-11 Score=103.88 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=78.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
.|+|+|.+|||||||+|+|++.. ......|..+ .+...+..+ ...+.+|||||.....
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~--~~~~~~~~~-----------------~~~~~~~D~~g~~~~~-- 58 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVG--FNMRKVTKG-----------------NVTLKVWDLGGQPRFR-- 58 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCC-CCcCccCCCC--cceEEEEEC-----------------CEEEEEEECCCCHhHH--
Confidence 48999999999999999999543 3333334332 333333322 2468999999974322
Q ss_pred ccccccccccchhccceEEEEEeccCCc---------------------ceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
......++.+|++++|+|+++.. ++..+.|+.|....... ..+.
T Consensus 59 -----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~----------~~~~ 123 (159)
T cd04159 59 -----SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV----------DELI 123 (159)
T ss_pred -----HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH----------HHHH
Confidence 12233467899999999987521 34556677664322110 0011
Q ss_pred HHH--HHH-HhcccCCCccccchHHHHHHHHHHHH
Q 012870 197 KRM--EKL-KKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 197 ~~~--~~~-~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
+.+ ... .+..+...+|++++.++.++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 124 EQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 111 000 00011234899999999999887754
No 174
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.20 E-value=5.4e-11 Score=110.02 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=82.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|++.++ .......| ++.+.....+..++.. ...+.+|||||..+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~-~~~~~~~~-t~~~~~~~~i~~~~~~--------------~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG-KFPEEYVP-TVFENYVTNIQGPNGK--------------IIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC-cCCCCCCC-eeeeeeEEEEEecCCc--------------EEEEEEEECCCchhHHH
Confidence 48999999999999999999944 33322222 2222222233333111 24689999999743222
Q ss_pred cccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
+ ....++.||++++|+|+++.. +++.+.|+.|...+... .. ....+...
T Consensus 65 ----~---~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~---~v~~~~~~ 133 (187)
T cd04132 65 ----L---RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNL-DR---KVTPAQAE 133 (187)
T ss_pred ----H---HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccc-cC---CcCHHHHH
Confidence 1 112357899999999987632 34555566553221100 00 00011111
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..... ....+...+||++|.|+.++++.+.+.+..
T Consensus 134 ~~~~~-~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 134 SVAKK-QGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHH-cCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 11111 111122348999999999999888776643
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=4e-11 Score=111.80 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=90.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCcccc-----------------CCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA-----------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~v-----------------s~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
...|+++|..++|||||+++|++...... ....+.|.+.....+.. ..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~---------------~~ 67 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK---------------NE 67 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB---------------TE
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc---------------cc
Confidence 36899999999999999999995322110 01123343333333320 01
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHH
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDV 182 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~ 182 (454)
....+.|+||||..+ +.......++.+|++++|||+.++ .+++.+.|+.|.. + ..
T Consensus 68 ~~~~i~~iDtPG~~~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~-~~ 138 (188)
T PF00009_consen 68 NNRKITLIDTPGHED-------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-E-KE 138 (188)
T ss_dssp SSEEEEEEEESSSHH-------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-H-HH
T ss_pred cccceeecccccccc-------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-h-hh
Confidence 146799999999743 333445567899999999999763 3477788999876 1 11
Q ss_pred HhHhhhcccHHHHH-HHHHHHHh----cccCCCccccchHHHHHHHHHHHHhhh
Q 012870 183 INLELVFSDLDQIE-KRMEKLKK----GKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 183 l~~el~l~d~~~l~-~~~~~~~~----~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+.+ ..+.+. ..++.... ..+..++||++|.|+..|++.+.+.+|
T Consensus 139 ~~~-----~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 139 LEE-----IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHH-----HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHH-----HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111 011111 11111110 112345899999999999999999887
No 176
>PRK09866 hypothetical protein; Provisional
Probab=99.19 E-value=1.1e-10 Score=125.08 Aligned_cols=40 Identities=33% Similarity=0.475 Sum_probs=35.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccce
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN 95 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~ 95 (454)
..+.++++|.+|+|||||+|+|+|....++++.|++|. |+
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT 107 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PT 107 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cE
Confidence 44899999999999999999999988888889999888 44
No 177
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=6.1e-12 Score=129.81 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=80.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...++.|+|+|||||||++|.+| .....+.||||||..-..|.+.+.- -.++++||||+...
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vt-radvevqpYaFTTksL~vGH~dykY-----------------lrwQViDTPGILD~ 228 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVT-RADDEVQPYAFTTKLLLVGHLDYKY-----------------LRWQVIDTPGILDR 228 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccc-ccccccCCcccccchhhhhhhhhhe-----------------eeeeecCCccccCc
Confidence 34689999999999999999999 8899999999999998888877663 45999999999754
Q ss_pred CCccc----ccccccccchhccceEEEEEeccC---------------------CcceEEecCccCC
Q 012870 135 ASQGE----GLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDP 176 (454)
Q Consensus 135 ~~~~~----~l~~~fl~~ir~aD~il~VvD~~~---------------------~~~v~~v~~~~dp 176 (454)
.-+.. ...-..++|++.| +|+++|.|+ +.+++.|.|+.|.
T Consensus 229 plEdrN~IEmqsITALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 229 PEEDRNIIEMQIITALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred chhhhhHHHHHHHHHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 32221 1112347788876 889999886 4567888899884
No 178
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=3.7e-10 Score=115.79 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=55.3
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcC----Ccc-----------ccCCCCc---cccccee---eeeeeCCCccchhcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN----GKA-----------QAANFPF---CTIEPNV---GIVAVPDPRLHVLSG 111 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~----~~~-----------~vs~~p~---tT~~~~~---~~~~~~d~r~~~l~~ 111 (454)
......||+||+-|+|||||+|++++. ..+ .+++.+| +|.+|.. ..+.+..
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~-------- 85 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI-------- 85 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec--------
Confidence 345689999999999999999999987 666 7888999 8888877 4444421
Q ss_pred cccCccccCceeEEEecCCccCCCCcc
Q 012870 112 LSKSQKAVPASVEFVDIAGLVKGASQG 138 (454)
Q Consensus 112 ~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (454)
..-+..++.++||+|+......|
T Consensus 86 ----~~~~~~~VrlIDcvG~~v~GalG 108 (492)
T TIGR02836 86 ----NEGTKFKVRLVDCVGYTVKGALG 108 (492)
T ss_pred ----cCCCcccEEEEECCCcccCCCcc
Confidence 11113579999999996544444
No 179
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.18 E-value=9.6e-11 Score=110.49 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=65.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCc------c---------ccCCCCcccccceeeeeeeCCCccchhcccccCccccCc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGK------A---------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~------~---------~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~ 121 (454)
+.|+++|.+|+|||||+++|++... . ...-..++|++.....+... +.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-----------------~~ 65 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA-----------------NR 65 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC-----------------Ce
Confidence 6899999999999999999985310 0 01113455555443333222 35
Q ss_pred eeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCC
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPK 177 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~ 177 (454)
++.|+||||..+ +.......+..+|++++|+|+.+. .+ ++.+.|+.|.+
T Consensus 66 ~i~~iDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 66 HYAHVDCPGHAD-------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred EEEEEECcCHHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 799999999842 334446667889999999998752 12 44567888865
No 180
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.18 E-value=2.1e-10 Score=106.95 Aligned_cols=151 Identities=14% Similarity=0.060 Sum_probs=84.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|||||||+++++++. ......|... +.....+.+++. ...+.+|||||......
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~-~~~~~~~t~~-~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY-FPQVYEPTVF-ENYVHDIFVDGL---------------HIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCccCCcce-eeeEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 389999999999999999999543 3222222221 111122222221 24689999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhH--hhh--cccH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL--ELV--FSDL 192 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~--el~--l~d~ 192 (454)
+.. ..++.||++++|+|+++. .+++.+.|+.|...+...... ... ....
T Consensus 64 ----l~~---~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~ 136 (189)
T cd04134 64 ----LRS---LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISY 136 (189)
T ss_pred ----ccc---ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCH
Confidence 111 235789999999997763 235666677775432211100 000 0011
Q ss_pred HHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.......... ..+...+||++|.|+.++++.+.+.+..
T Consensus 137 ~~~~~~~~~~~-~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 137 EEGLAVAKRIN-ALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHHHHcC-CCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 11111111110 0112348999999999999988877654
No 181
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.18 E-value=2.5e-10 Score=102.57 Aligned_cols=149 Identities=25% Similarity=0.321 Sum_probs=93.0
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||+++|.++||||||++++.++. ......|....+.....+.+++. ...+.+|||||..+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~~- 63 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGK---------------PVNLEIWDTSGQERFDS- 63 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTE---------------EEEEEEEEETTSGGGHH-
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccccccccccccccccccccc---------------ccccccccccccccccc-
Confidence 79999999999999999999543 33333332224444455555432 25699999999743211
Q ss_pred ccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccchH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKED 217 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~~~ 217 (454)
+. -..++++|++++|+|..+.. .++. +.
T Consensus 64 ---~~---~~~~~~~~~~ii~fd~~~~~----------------S~~~---------~~--------------------- 91 (162)
T PF00071_consen 64 ---LR---DIFYRNSDAIIIVFDVTDEE----------------SFEN---------LK--------------------- 91 (162)
T ss_dssp ---HH---HHHHTTESEEEEEEETTBHH----------------HHHT---------HH---------------------
T ss_pred ---cc---cccccccccccccccccccc----------------cccc---------cc---------------------
Confidence 11 22367899999999974321 1100 00
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEEEe
Q 012870 218 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 297 (454)
Q Consensus 218 ~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~i 297 (454)
..++.+.... . ...|+++++||.| ..+. .....+++++++.+++.+++.+
T Consensus 92 ---~~~~~i~~~~-----------------------~-~~~~iivvg~K~D--~~~~-~~v~~~~~~~~~~~~~~~~~e~ 141 (162)
T PF00071_consen 92 ---KWLEEIQKYK-----------------------P-EDIPIIVVGNKSD--LSDE-REVSVEEAQEFAKELGVPYFEV 141 (162)
T ss_dssp ---HHHHHHHHHS-----------------------T-TTSEEEEEEETTT--GGGG-SSSCHHHHHHHHHHTTSEEEEE
T ss_pred ---cccccccccc-----------------------c-ccccceeeecccc--cccc-ccchhhHHHHHHHHhCCEEEEE
Confidence 1111111111 0 2579999999985 3322 1445678888999889999999
Q ss_pred chhhhHHh
Q 012870 298 SAQVEAEL 305 (454)
Q Consensus 298 SA~~E~~l 305 (454)
||+...++
T Consensus 142 Sa~~~~~v 149 (162)
T PF00071_consen 142 SAKNGENV 149 (162)
T ss_dssp BTTTTTTH
T ss_pred ECCCCCCH
Confidence 99987655
No 182
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.17 E-value=2.8e-11 Score=109.63 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=47.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
...+|+++|.||||||||+|+|.+...+.+++.|++|++...-. .+ ..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~--~~------------------~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT--LM------------------KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE--cC------------------CCEEEEECcCC
Confidence 35789999999999999999999888899999999998654322 22 34899999996
No 183
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.5e-10 Score=106.58 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=109.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...+||+++|.|+||||-|+.+++ +..+....++...++.....+.++++. ...++|||+|+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRft-rnEF~~~SksTIGvef~t~t~~vd~k~---------------vkaqIWDTAGQER 75 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFT-RNEFSLESKSTIGVEFATRTVNVDGKT---------------VKAQIWDTAGQER 75 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhc-ccccCcccccceeEEEEeeceeecCcE---------------EEEeeecccchhh
Confidence 356899999999999999999999 777777888888888888888887643 4589999999977
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
...-. -+..|.|-+.++|.|.+.... + +.+++-+..+.
T Consensus 76 yrAit-------SaYYrgAvGAllVYDITr~~T-------------f------------env~rWL~ELR---------- 113 (222)
T KOG0087|consen 76 YRAIT-------SAYYRGAVGALLVYDITRRQT-------------F------------ENVERWLKELR---------- 113 (222)
T ss_pred hcccc-------chhhcccceeEEEEechhHHH-------------H------------HHHHHHHHHHH----------
Confidence 65322 234788999999999742110 0 11111111110
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
. + .-..-++++|.||.| +..- +....++.+.++++++..
T Consensus 114 --------------d-------h-----------------ad~nivimLvGNK~D--L~~l-raV~te~~k~~Ae~~~l~ 152 (222)
T KOG0087|consen 114 --------------D-------H-----------------ADSNIVIMLVGNKSD--LNHL-RAVPTEDGKAFAEKEGLF 152 (222)
T ss_pred --------------h-------c-----------------CCCCeEEEEeecchh--hhhc-cccchhhhHhHHHhcCce
Confidence 0 0 115778999999984 4332 245678889999999999
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
|+.+||....++
T Consensus 153 f~EtSAl~~tNV 164 (222)
T KOG0087|consen 153 FLETSALDATNV 164 (222)
T ss_pred EEEecccccccH
Confidence 999999877665
No 184
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.15 E-value=2.5e-10 Score=105.81 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=82.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||++++.++ .......|... +.....+.+++. ...+.+|||||......
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~-~f~~~~~~t~~-~~~~~~~~~~~~---------------~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD-CYPETYVPTVF-ENYTASFEIDEQ---------------RIELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-cCCCCcCCceE-EEEEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 68999999999999999999943 33332223222 111223334332 24689999999854332
Q ss_pred cccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhh-----ccc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELV-----FSD 191 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~-----l~d 191 (454)
+. ...+++||++++|+|+++.. +++.+.|+.|...+...+.. +. ...
T Consensus 65 ----~~---~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~-~~~~~~~~v~ 136 (178)
T cd04131 65 ----VR---PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLME-LSHQRQAPVS 136 (178)
T ss_pred ----cc---hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHH-HHhcCCCCCC
Confidence 11 12467899999999987632 34556677764332221111 00 011
Q ss_pred HHHHHHHHHHHHhcc---cCCCccccchHH-HHHHHHHHHH
Q 012870 192 LDQIEKRMEKLKKGK---AKDSQSKLKEDA-EKAALEKIQQ 228 (454)
Q Consensus 192 ~~~l~~~~~~~~~~~---~~~~vSak~~~~-~~~ll~~i~~ 228 (454)
.+. ...+.+.. ....+||++|.+ +.+++..+.+
T Consensus 137 ~~e----~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 137 YEQ----GCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHH----HHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 111 11222211 123389999985 9998887765
No 185
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.15 E-value=4e-11 Score=109.47 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=53.6
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.+|||||||+|+|+++ ... ....|...+...+... +..+.+|||||..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~--~~~~t~g~~~~~~~~~-----------------~~~~~i~D~~G~~~~--- 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPK--KVAPTVGFTPTKLRLD-----------------KYEVCIFDLGGGANF--- 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCc--cccCcccceEEEEEEC-----------------CEEEEEEECCCcHHH---
Confidence 4899999999999999999954 211 1223333333344333 356899999997432
Q ss_pred ccccccccccchhccceEEEEEeccC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+..++++||++++|+|+++
T Consensus 57 ----~~~~~~~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 57 ----RGIWVNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred ----HHHHHHHHcCCCEEEEEEECCc
Confidence 2233456789999999999876
No 186
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.14 E-value=3.7e-10 Score=101.52 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=62.8
Q ss_pred hhhccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEe
Q 012870 48 SSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (454)
Q Consensus 48 ~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvD 127 (454)
|+.+...+.++|-|+|..||||||++++|.|.....++| |.-.+...+.+++ .++.+||
T Consensus 8 rk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~-----------------~~L~iwD 66 (185)
T KOG0073|consen 8 RKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKG-----------------YTLNIWD 66 (185)
T ss_pred HHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecc-----------------eEEEEEE
Confidence 334444458999999999999999999999665433332 3344555566653 6899999
Q ss_pred cCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 128 tpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.-|.... .+-+.++...+|++++|||.+
T Consensus 67 vGGq~~l-------r~~W~nYfestdglIwvvDss 94 (185)
T KOG0073|consen 67 VGGQKTL-------RSYWKNYFESTDGLIWVVDSS 94 (185)
T ss_pred cCCcchh-------HHHHHHhhhccCeEEEEEECc
Confidence 9998542 233445678899999999974
No 187
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.14 E-value=2.4e-10 Score=106.82 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=84.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.++||||||++++.. ........|... +.....+.+++. ...+.+|||||..+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~-~~f~~~~~~t~~-~~~~~~~~~~~~---------------~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTT-NAFPKEYIPTVF-DNYSAQTAVDGR---------------TVSLNLWDTAGQEEYDR 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHh-CCCCcCCCCceE-eeeEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 7999999999999999999994 333222222221 111112223321 24689999999965433
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHHH-
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI- 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l- 195 (454)
+. -..+++||++++|+|+++. .+++.+.|+.|...+...... +.......+
T Consensus 67 ----l~---~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~-~~~~~~~~v~ 138 (191)
T cd01875 67 ----LR---TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKK-LKEQGQAPIT 138 (191)
T ss_pred ----hh---hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHH-HhhccCCCCC
Confidence 11 1236789999999998762 245666677774322211111 100000000
Q ss_pred HHHHHHHHhcc---cCCCccccchHHHHHHHHHHHHhhh
Q 012870 196 EKRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 196 ~~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
......+.+.. +...+||++|.|+.++++.+.+.+.
T Consensus 139 ~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 139 PQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 00111121111 2234899999999999998877663
No 188
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.2e-10 Score=105.04 Aligned_cols=153 Identities=19% Similarity=0.134 Sum_probs=102.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+|+.++|..+||||.|+-+.+ .+.+..-.-....++.-...+.+++. +.++++|||+|....
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~-~krF~~~hd~TiGvefg~r~~~id~k---------------~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFT-DKRFQPVHDLTIGVEFGARMVTIDGK---------------QIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHh-ccCccccccceeeeeeceeEEEEcCc---------------eEEEEEEecCCcHHH
Confidence 34799999999999999999999 55554333333444555556666653 356999999999654
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.+ +. -+.+|.|-.+|+|.|....+. +..| .
T Consensus 69 rs----v~---~syYr~a~GalLVydit~r~s-------------F~hL------------~------------------ 98 (216)
T KOG0098|consen 69 RS----VT---RSYYRGAAGALLVYDITRRES-------------FNHL------------T------------------ 98 (216)
T ss_pred HH----HH---HHHhccCcceEEEEEccchhh-------------HHHH------------H------------------
Confidence 43 22 234678888999999743221 1110 0
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.-|+.+.++. -.+--++++.||+ |+... +....++.+.|+++||..+
T Consensus 99 ------~wL~D~rq~~------------------------~~NmvImLiGNKs--DL~~r-R~Vs~EEGeaFA~ehgLif 145 (216)
T KOG0098|consen 99 ------SWLEDARQHS------------------------NENMVIMLIGNKS--DLEAR-REVSKEEGEAFAREHGLIF 145 (216)
T ss_pred ------HHHHHHHHhc------------------------CCCcEEEEEcchh--hhhcc-ccccHHHHHHHHHHcCcee
Confidence 0011111111 1355678899998 45443 3567788999999999999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+.+||+.++++.
T Consensus 146 mETSakt~~~VE 157 (216)
T KOG0098|consen 146 METSAKTAENVE 157 (216)
T ss_pred ehhhhhhhhhHH
Confidence 999999998873
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.14 E-value=1.8e-10 Score=125.44 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=94.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCC--ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~--~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
+.|+++|.+|+|||||+|+|+|.. .......+++|++.....+..++ ..+.||||||..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-----------------~~v~~iDtPGhe~- 62 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-----------------YRLGFIDVPGHEK- 62 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-----------------EEEEEEECCCHHH-
Confidence 368999999999999999999643 22333456788877666666553 4689999999632
Q ss_pred CCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
+....+..+..+|++++|+|+.++ .+ ++.+.|+.|.+.+- .+.. ..+.+..
T Consensus 63 ------f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~-~~~~-----~~~ei~~ 130 (581)
T TIGR00475 63 ------FISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE-EIKR-----TEMFMKQ 130 (581)
T ss_pred ------HHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH-HHHH-----HHHHHHH
Confidence 333445667889999999999762 12 56667777755321 1100 0011111
Q ss_pred HHHHHH--hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 198 RMEKLK--KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 198 ~~~~~~--~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+.... ...+..++||++|.|+.++.+.+.+.++.
T Consensus 131 ~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 131 ILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 111111 01233458999999999999888777754
No 190
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.13 E-value=8.7e-10 Score=109.13 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=55.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCc-----cccC------------CCCcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGK-----AQAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~-----~~vs------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
.|+|+|.+|+|||||+|+|+.... ..+. ...++|++.....+... +
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~-----------------~ 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK-----------------D 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC-----------------C
Confidence 389999999999999999963111 1111 12345555544444443 3
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.++.||||||..+ +.......++.+|++++|+|+.+
T Consensus 64 ~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 64 HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred EEEEEEECCCcHH-------HHHHHHHHHHHcCEEEEEEECCC
Confidence 6799999999854 22334566889999999999854
No 191
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.12 E-value=6.7e-11 Score=119.87 Aligned_cols=63 Identities=30% Similarity=0.414 Sum_probs=53.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
....++++||+||||||||+|+|.|...+.++++||+|...+.-.+. ..+.++||||++.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~--------------------~~i~LlDtPGii~ 189 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD--------------------DGIYLLDTPGIIP 189 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC--------------------CCeEEecCCCcCC
Confidence 34578999999999999999999999999999999999876655542 3489999999986
Q ss_pred CCC
Q 012870 134 GAS 136 (454)
Q Consensus 134 ~~~ 136 (454)
+..
T Consensus 190 ~~~ 192 (322)
T COG1161 190 PKF 192 (322)
T ss_pred CCc
Confidence 543
No 192
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.12 E-value=2.3e-10 Score=124.34 Aligned_cols=146 Identities=19% Similarity=0.130 Sum_probs=92.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..+++|+++|.+|+|||||+++|++ ........+++|.+.....+.+++ ..++.||||||...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~-~~v~~~e~~GIT~~ig~~~v~~~~----------------~~~i~~iDTPGhe~ 147 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRK-TKVAQGEAGGITQHIGAYHVENED----------------GKMITFLDTPGHEA 147 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh-CCcccccCCceeecceEEEEEECC----------------CcEEEEEECCCCcc
Confidence 4568999999999999999999995 444456677888766555555443 12699999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHhHhhhcccHHHHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQIE 196 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~~el~l~d~~~l~ 196 (454)
... .....++.+|++++|+|+.+. .+++.+.|+.|... +...+..++... +..
T Consensus 148 F~~-------~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~--g~~- 217 (587)
T TIGR00487 148 FTS-------MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY--GLV- 217 (587)
T ss_pred hhh-------HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh--hhh-
Confidence 332 112346789999999998752 24666778888432 222222211100 000
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHH
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+.+....+..++||++|.|+.++++.+..
T Consensus 218 --~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 --PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred --HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 001111112345899999999999988753
No 193
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.12 E-value=6.5e-10 Score=103.06 Aligned_cols=148 Identities=19% Similarity=0.143 Sum_probs=85.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.++||||||+++++ .........|.. .+.....+.+++. ...+.+|||+|..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~-~~~f~~~~~~Ti-~~~~~~~~~~~~~---------------~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT-SNKFPTDYIPTV-FDNFSANVSVDGN---------------TVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh-cCCCCCCCCCcc-eeeeEEEEEECCE---------------EEEEEEEECCCCccccc
Confidence 589999999999999999999 444433333322 1222222333321 24689999999865433
Q ss_pred cccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
. ....+++||++++|+|+++.. +++.+.|+.|..++............ ...
T Consensus 65 ~-------~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~--v~~ 135 (176)
T cd04133 65 L-------RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP--ITT 135 (176)
T ss_pred c-------chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC--CCH
Confidence 2 122468999999999987632 34556666664332111000000000 001
Q ss_pred HHHHHHHhcc---cCCCccccchHHHHHHHHHHHHhh
Q 012870 197 KRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 197 ~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
+....+.+.. ....+||+++.|++++++.+.+.+
T Consensus 136 ~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 136 AQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 1111222211 123489999999999999888765
No 194
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.12 E-value=7.7e-11 Score=115.25 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=65.8
Q ss_pred cccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 52 ~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
.....++|+++|.+|||||||+|+|+|...+.+++++.+|..+........ +.++.+|||||+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~-----------------g~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD-----------------GFKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-----------------CeEEEEEECCCc
Confidence 445678999999999999999999998888888888888887776655443 356999999999
Q ss_pred cCCCCc---ccccccccccch--hccceEEEEEec
Q 012870 132 VKGASQ---GEGLGNKFLSHI--REVDSILQVVRC 161 (454)
Q Consensus 132 ~~~~~~---~~~l~~~fl~~i--r~aD~il~VvD~ 161 (454)
...... .....+.....+ ...|++++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rl 124 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRL 124 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 765321 111111111122 257888888654
No 195
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.10 E-value=4.5e-10 Score=105.72 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=80.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCC----cccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP----FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p----~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
+++|+++|.+|||||||+|+|+|......+..+ .+|.... .+..++ ...+.+|||||+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~----------------~~~l~l~DtpG~ 62 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPK----------------FPNVTLWDLPGI 62 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCC----------------CCCceEEeCCCC
Confidence 368999999999999999999964332211111 1222111 111010 235899999999
Q ss_pred cCCCCcccccccccccchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccH-HHHH
Q 012870 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDL-DQIE 196 (454)
Q Consensus 132 ~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~-~~l~ 196 (454)
.......+.+.+.+ .+.++|++++|.|..- ..+++.|.|+.|....-... ........ +.++
T Consensus 63 ~~~~~~~~~~l~~~--~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~-~~~~~~~~~~~l~ 139 (197)
T cd04104 63 GSTAFPPDDYLEEM--KFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQR-SKPRSFNREQVLQ 139 (197)
T ss_pred CcccCCHHHHHHHh--CccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhc-cccccccHHHHHH
Confidence 65332222221111 2467899998866421 23467788888853211100 00000001 1122
Q ss_pred HHHHHHHhcc--------cCCCcccc--chHHHHHHHHHHHHhhhCC
Q 012870 197 KRMEKLKKGK--------AKDSQSKL--KEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 197 ~~~~~~~~~~--------~~~~vSak--~~~~~~~ll~~i~~~L~~~ 233 (454)
...+.+.... +...+|+. .+.+...|.+.+...|++.
T Consensus 140 ~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 140 EIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2222221111 11126776 5677888888888888753
No 196
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.10 E-value=1.1e-10 Score=116.52 Aligned_cols=62 Identities=32% Similarity=0.471 Sum_probs=51.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
....+|+++|.||||||||+|+|+|...+.+++.|++|++.+. +.+. .++.++||||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG------------------KGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC------------------CcEEEEECCCcCC
Confidence 3457999999999999999999998888899999999988753 3222 3589999999975
Q ss_pred CC
Q 012870 134 GA 135 (454)
Q Consensus 134 ~~ 135 (454)
+.
T Consensus 179 ~~ 180 (287)
T PRK09563 179 PK 180 (287)
T ss_pred CC
Confidence 54
No 197
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.09 E-value=5.7e-10 Score=107.34 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=84.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||++||.+|||||||++++++ ........|... +.....+.+++. ...+.+|||||......
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~-~~f~~~y~pTi~-~~~~~~~~~~~~---------------~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK-DAYPGSYVPTVF-ENYTASFEIDKR---------------RIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc-CCCCCccCCccc-cceEEEEEECCE---------------EEEEEEEeCCCcHHHHH
Confidence 6899999999999999999994 333333333222 222223333332 24689999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
+. -..++.+|++++|+|+++. .+++.|.|+.|...+...++..-.......-.
T Consensus 65 ----l~---~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~ 137 (222)
T cd04173 65 ----VR---PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTH 137 (222)
T ss_pred ----Hh---HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCH
Confidence 11 1236789999999998772 24677888888655443322200000000001
Q ss_pred HHHHHHHhcc---cCCCccccchHH-HHHHHHHHHH
Q 012870 197 KRMEKLKKGK---AKDSQSKLKEDA-EKAALEKIQQ 228 (454)
Q Consensus 197 ~~~~~~~~~~---~~~~vSak~~~~-~~~ll~~i~~ 228 (454)
.....+.+.. .....||+++.+ +.++++.+..
T Consensus 138 e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 138 EQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 1112222222 122379998875 8888876655
No 198
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.08 E-value=1.7e-10 Score=104.35 Aligned_cols=58 Identities=29% Similarity=0.513 Sum_probs=49.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
....+++++|.||+|||||+|+|++.....+++.|+||+++..... +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--------------------DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--------------------cCCEEEEECCCC
Confidence 3568899999999999999999998777889999999999876543 135899999996
No 199
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.07 E-value=5.1e-10 Score=108.39 Aligned_cols=148 Identities=13% Similarity=0.106 Sum_probs=85.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...||++||.++||||||++++++ ........|....+ ....+.+++. ...+.+|||||....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~-~~F~~~y~pTi~~~-~~~~i~~~~~---------------~v~l~iwDTaG~e~~ 74 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAK-DCYPETYVPTVFEN-YTAGLETEEQ---------------RVELSLWDTSGSPYY 74 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhc-CCCCCCcCCceeee-eEEEEEECCE---------------EEEEEEEeCCCchhh
Confidence 457999999999999999999994 33333323322222 1122333332 246999999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhh-----c
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELV-----F 189 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~-----l 189 (454)
.. + ....+++||++++|+|+++.. +++.|.|+.|...+...+.+ +. .
T Consensus 75 ~~----~---~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~-l~~~~~~~ 146 (232)
T cd04174 75 DN----V---RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLME-LSNQKQAP 146 (232)
T ss_pred HH----H---HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhh-hccccCCc
Confidence 22 1 123468999999999987622 35667777774332211110 00 0
Q ss_pred ccHHHHHHHHHHHHhccc---CCCccccchH-HHHHHHHHHHHhhh
Q 012870 190 SDLDQIEKRMEKLKKGKA---KDSQSKLKED-AEKAALEKIQQALM 231 (454)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~---~~~vSak~~~-~~~~ll~~i~~~L~ 231 (454)
...+. .+.+.+... ...+||++|. ++.++++.+...+.
T Consensus 147 Vs~~e----~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 147 ISYEQ----GCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCHHH----HHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 11111 122222211 2238999997 79999988776553
No 200
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.07 E-value=6.9e-10 Score=103.37 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||+++|.++||||||++++.+ ........| |..+.....+.+++. ...+.+|||+|....
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~-~~f~~~~~p-T~~~~~~~~~~~~~~---------------~~~l~iwDtaG~e~~ 66 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAK-DCFPENYVP-TVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 66 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh-CCCCCccCC-ceeeeeEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 347999999999999999999994 333322222 221222223333332 246899999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccH-H
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDL-D 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~-~ 193 (454)
.. +. ...+++||++++|+|+++.. +++.+.|+.|...+...+.+ +..... .
T Consensus 67 ~~----~~---~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~-~~~~~~~~ 138 (182)
T cd04172 67 DN----VR---PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVE-LSNHRQTP 138 (182)
T ss_pred Hh----hh---hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHH-HHhcCCCC
Confidence 32 11 23467899999999987632 34556677664332221110 000000 0
Q ss_pred HHHHHHHHHHhcc---cCCCccccchHH-HHHHHHHHHH
Q 012870 194 QIEKRMEKLKKGK---AKDSQSKLKEDA-EKAALEKIQQ 228 (454)
Q Consensus 194 ~l~~~~~~~~~~~---~~~~vSak~~~~-~~~ll~~i~~ 228 (454)
.-....+.+.+.. +...+||+++.| +.++++.+.+
T Consensus 139 v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 139 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 0011112222221 123489999998 9998887655
No 201
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.07 E-value=3.4e-10 Score=125.17 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=93.9
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
....+.|+|+|.+|+|||||+++|++ .....+..+++|.+.....+.+... + -...+.||||||..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~-~~~~~~e~~GiTq~i~~~~v~~~~~----------~---~~~kItfiDTPGhe 306 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRK-TQIAQKEAGGITQKIGAYEVEFEYK----------D---ENQKIVFLDTPGHE 306 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHh-ccCccccCCccccccceEEEEEEec----------C---CceEEEEEECCcHH
Confidence 34668999999999999999999994 4444455677776655444433210 0 02569999999974
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHhHhhhcccHHHH
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQI 195 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~~el~l~d~~~l 195 (454)
.. .......++.+|++++|||+.+. .+++.+.|+.|... +...+..++...+ .+
T Consensus 307 ~F-------~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~--ll 377 (742)
T CHL00189 307 AF-------SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYN--LI 377 (742)
T ss_pred HH-------HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhc--cc
Confidence 32 22223456789999999998762 24566778888532 2222222221110 00
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.+.+....+..++||++|.|+.+|++.+....
T Consensus 378 ---~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 378 ---PEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ---hHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 00011112234589999999999999886654
No 202
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.07 E-value=5.6e-10 Score=103.13 Aligned_cols=137 Identities=23% Similarity=0.208 Sum_probs=87.5
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
....+|.++|.+||||||+++.|..+.... +..|...+...+.+. +..+.+||.+|...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~~~-----------------~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIKYK-----------------GYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEEET-----------------TEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceeeeC-----------------cEEEEEEecccccc
Confidence 456899999999999999999999543322 233555566666665 35799999999743
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChh--HHHhHhhhcc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFS 190 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di--~~l~~el~l~ 190 (454)
.. ..+...++++|++++|||+++. .++..+.|+.|..... ..+...+.+.
T Consensus 71 ~~-------~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~ 143 (175)
T PF00025_consen 71 FR-------PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLE 143 (175)
T ss_dssp GG-------GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGG
T ss_pred cc-------ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhh
Confidence 22 2333456789999999999873 2455566777743221 2222211111
Q ss_pred cHHHHHHHHHHHH--hcccCCCccccchHHHHHHHHHHHH
Q 012870 191 DLDQIEKRMEKLK--KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 191 d~~~l~~~~~~~~--~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+. +.....+.||.+|.|+.+.++.+.+
T Consensus 144 ----------~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 144 ----------KLKNKRPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp ----------GTTSSSCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ----------hcccCCceEEEeeeccCCcCHHHHHHHHHh
Confidence 111 1111123789999999988887755
No 203
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.07 E-value=7.5e-10 Score=104.71 Aligned_cols=100 Identities=22% Similarity=0.165 Sum_probs=60.0
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHH
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDV 182 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~ 182 (454)
.++.||||||.. .+...++..+..+|++++|+|+.++. +++.+.|+.|...+-..
T Consensus 83 ~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 83 RHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHH
Confidence 579999999952 35556677788899999999997521 13345555554321110
Q ss_pred HhHhhhcccHHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 183 INLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 183 l~~el~l~d~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.. ..+.+.+.+.... ...+..++||+++.|+.+|++.+.+.+++.
T Consensus 156 -~~-----~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 156 -LE-----NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred -HH-----HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 00 0011111111100 011223489999999999999999988764
No 204
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.07 E-value=4e-10 Score=125.58 Aligned_cols=146 Identities=18% Similarity=0.129 Sum_probs=94.6
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
...++.|+|+|.+|+|||||+++|.+ .....+..+++|.+.....+.+++ ..+.||||||..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~-~~v~~~e~~GIT~~iga~~v~~~~-----------------~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRK-TNVAAGEAGGITQHIGAYQVETNG-----------------GKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh-CCccccccCceeeeccEEEEEECC-----------------EEEEEEECCCCc
Confidence 34568999999999999999999994 444456677788765555554442 469999999985
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC-ChhHHHhHhhhcccHHHH
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK-SDVDVINLELVFSDLDQI 195 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~-~di~~l~~el~l~d~~~l 195 (454)
.... .....++.+|++++|+|+.+. .+++.+.|+.|.. .+...+..++... +.+
T Consensus 349 ~F~~-------m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~--~~~ 419 (787)
T PRK05306 349 AFTA-------MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY--GLV 419 (787)
T ss_pred cchh-------HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh--ccc
Confidence 4432 222346779999999998752 3467777888853 2233332222110 000
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHH
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+.+....+..++||++|.|+.+|++.+..
T Consensus 420 ---~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 420 ---PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred ---HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 011111122345899999999999988764
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.06 E-value=5.9e-10 Score=121.91 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=91.8
Q ss_pred EEEEEecCCCCCcHHHHHhhcCC--ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~--~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
-||++|.+|+|||||+|+|+|.. ........+.|++.....+..++ +..+.||||||..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~----------------g~~i~~IDtPGhe~-- 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD----------------GRVLGFIDVPGHEK-- 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC----------------CcEEEEEECCCHHH--
Confidence 58999999999999999999642 23334456788776555544433 23589999999732
Q ss_pred CcccccccccccchhccceEEEEEeccCCc----------------c-eEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------D-IVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~-v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
+....+..+..+|++++|||+.+.. + ++.+.|+.|.+.+ ..+.. ..+.+.+.
T Consensus 64 -----fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-~~~~~-----v~~ei~~~ 132 (614)
T PRK10512 64 -----FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-ARIAE-----VRRQVKAV 132 (614)
T ss_pred -----HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-HHHHH-----HHHHHHHH
Confidence 3334455678899999999987621 1 3456677775432 11100 00111111
Q ss_pred HHHHH-hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 199 MEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 199 ~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.... ...+..++||++|.|+++|++.+.+....
T Consensus 133 l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 133 LREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 11110 01123458999999999999999877654
No 206
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.06 E-value=2.4e-10 Score=114.25 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=63.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+||||||++|+|+|...+.+++++.+|..+........ +.++.+|||||+.+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~-----------------G~~l~VIDTPGL~d 98 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA-----------------GFTLNIIDTPGLIE 98 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-----------------CeEEEEEECCCCCc
Confidence 3568999999999999999999998888888888877776655443332 35799999999976
Q ss_pred CCCccccc---ccccccchhccceEEEEEec
Q 012870 134 GASQGEGL---GNKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 134 ~~~~~~~l---~~~fl~~ir~aD~il~VvD~ 161 (454)
.....+.. ...|+.. ...|++|+|.+.
T Consensus 99 ~~~~~e~~~~~ik~~l~~-~g~DvVLyV~rL 128 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLG-KTIDVLLYVDRL 128 (313)
T ss_pred hHHHHHHHHHHHHHHhhc-CCCCEEEEEecc
Confidence 53221111 1122211 268999999654
No 207
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.04 E-value=2.5e-10 Score=113.22 Aligned_cols=61 Identities=34% Similarity=0.430 Sum_probs=50.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|++||.||||||||+|+|++...+.+++.|++|+.++... +. ..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK--LS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE--eC------------------CCEEEEECCCcccC
Confidence 45789999999999999999999888889999999999875333 22 24899999999755
Q ss_pred C
Q 012870 135 A 135 (454)
Q Consensus 135 ~ 135 (454)
.
T Consensus 177 ~ 177 (276)
T TIGR03596 177 K 177 (276)
T ss_pred C
Confidence 4
No 208
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.04 E-value=2.4e-09 Score=100.93 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=34.2
Q ss_pred cCcEEEEEeccccccCCC------------------CCCccHHHHHHHHhhcCCcEEEechhhhHHh
Q 012870 257 MKPIIYVANVAESDLADP------------------GSNPHVNEVMNLASDLQSGRVTISAQVEAEL 305 (454)
Q Consensus 257 ~kpi~~v~N~~~~d~~~~------------------~~~~~~~~i~~~~~~~~~~~v~iSA~~E~~l 305 (454)
..|+++|+||.| +.+. .+....++.++++++.+.+++.+||+...++
T Consensus 120 ~~piilvgNK~D--L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V 184 (195)
T cd01873 120 RVPVILVGCKLD--LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGV 184 (195)
T ss_pred CCCEEEEEEchh--ccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCH
Confidence 468999999985 3210 0133456788899888999999999987655
No 209
>CHL00071 tufA elongation factor Tu
Probab=99.04 E-value=9e-10 Score=115.23 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=68.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccc---------------cCCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~---------------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
+..++|+++|.+|+|||||+|+|++..... ..-.+++|++.....+..+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---------------- 73 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE---------------- 73 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------
Confidence 345889999999999999999999542111 1112566666544333222
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKS 178 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~ 178 (454)
+.++.|+||||.. .+.......+..+|++++|+|+.+. .+ ++.+.|+.|.+.
T Consensus 74 -~~~~~~iDtPGh~-------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 74 -NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred -CeEEEEEECCChH-------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 3579999999953 2334445667899999999998752 23 445788888764
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.01 E-value=1.3e-09 Score=118.46 Aligned_cols=112 Identities=17% Similarity=0.103 Sum_probs=66.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCc-ccccceeeeeeeCCCccchhcccc-cCc--cccCceeEEEecCCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLS-KSQ--KAVPASVEFVDIAGL 131 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-tT~~~~~~~~~~~d~r~~~l~~~~-~~~--~~~~~~i~lvDtpGl 131 (454)
.+.|+++|.+|+|||||+|+|++... +...|+ +|.+.....++.+. ....+... ... +.-..++.||||||.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~--~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDV--IEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeecc--ccccccccccccccccccCcEEEEECCCc
Confidence 57899999999999999999995532 233343 55432222222211 00000000 000 000134899999997
Q ss_pred cCCCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCCC
Q 012870 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (454)
Q Consensus 132 ~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~~ 178 (454)
..... .....++.+|++++|+|+++ +.+++.+.|+.|...
T Consensus 80 e~f~~-------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 80 EAFTN-------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HhHHH-------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 43322 12234578999999999875 235677888888653
No 211
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.01 E-value=1.8e-09 Score=113.44 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=59.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccc------------------------------cCCCCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~------------------------------vs~~p~tT~~~~~~~~~~~d 103 (454)
+..++|+++|.+++|||||+++|+...... .....++|++.....+..+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~- 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD- 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence 345789999999999999999998421110 0113366666665555443
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
..++.||||||..+ +.......++.+|++++|+|+++.
T Consensus 84 ----------------~~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 84 ----------------KYEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred ----------------CeEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCC
Confidence 35799999999632 333444556889999999998653
No 212
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.5e-09 Score=94.71 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=96.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
-.+||++||..+||||.|+.++| +..++.+.-+...++.....+.++.+. .++++|||+|..+.
T Consensus 6 flfkivlvgnagvgktclvrrft-qglfppgqgatigvdfmiktvev~gek---------------iklqiwdtagqerf 69 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEVNGEK---------------IKLQIWDTAGQERF 69 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhh-ccCCCCCCCceeeeeEEEEEEEECCeE---------------EEEEEeeccchHHH
Confidence 35799999999999999999999 888887776666777778888887654 46999999999765
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcc--------------------eEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDND--------------------IVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~--------------------v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.+ -..+..|.|+++++|.|.+..+. -+.|.|++|.-+..++- +.
T Consensus 70 rs-------itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp---------~q 133 (213)
T KOG0095|consen 70 RS-------ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVP---------QQ 133 (213)
T ss_pred HH-------HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhh---------HH
Confidence 54 22345788999999999876432 13345555543221111 11
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+.+........+ .-..||+...|++.|+..+...|-
T Consensus 134 igeefs~~qdmy-fletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 134 IGEEFSEAQDMY-FLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred HHHHHHHhhhhh-hhhhcccchhhHHHHHHHHHHHHH
Confidence 111111111111 112788999999998887766664
No 213
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=97.95 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||.|||.++||||||+-+++ ...+....-.....|.....+.+...+ .++.+|||+|+.+.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv-~~~fd~~~~~tIGvDFkvk~m~vdg~~---------------~KlaiWDTAGqErF 73 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFV-SNTFDDLHPTTIGVDFKVKVMQVDGKR---------------LKLAIWDTAGQERF 73 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHH-hcccCccCCceeeeeEEEEEEEEcCce---------------EEEEEEeccchHhh
Confidence 34899999999999999999999 444332222224456677777777655 46999999999776
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.... -+..|.|-.+|+|.|+..
T Consensus 74 RtLT-------pSyyRgaqGiIlVYDVT~ 95 (209)
T KOG0080|consen 74 RTLT-------PSYYRGAQGIILVYDVTS 95 (209)
T ss_pred hccC-------HhHhccCceeEEEEEccc
Confidence 6532 234788999999999854
No 214
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=3.3e-10 Score=105.75 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=46.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCC--------ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEe
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENG--------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~--------~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvD 127 (454)
..+++++|.||||||||+|+|.+.. .+.+++.|+||+++....+. ..+.++|
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~D 186 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLYD 186 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEEe
Confidence 4689999999999999999999643 35788999999998777652 2479999
Q ss_pred cCCc
Q 012870 128 IAGL 131 (454)
Q Consensus 128 tpGl 131 (454)
|||+
T Consensus 187 tPG~ 190 (190)
T cd01855 187 TPGI 190 (190)
T ss_pred CcCC
Confidence 9996
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.99 E-value=1.3e-09 Score=104.29 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=56.0
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCcc------------------------------ccCCCCcccccceeeeeeeCCCccc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKA------------------------------QAANFPFCTIEPNVGIVAVPDPRLH 107 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~------------------------------~vs~~p~tT~~~~~~~~~~~d~r~~ 107 (454)
.|+++|.+++|||||+.+|+..... ......++|++.....+...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 3899999999999999999632111 01113355666655555444
Q ss_pred hhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+..+.+|||||..+ +.......++.+|++++|||+.+
T Consensus 76 ------------~~~i~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 76 ------------KYRFTILDAPGHRD-------FVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred ------------CeEEEEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCC
Confidence 35699999999743 22344556778999999999864
No 216
>PRK12735 elongation factor Tu; Reviewed
Probab=98.98 E-value=1.8e-09 Score=112.45 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=57.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcC------Cccc---------cCCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~------~~~~---------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
+..++|+++|.+|+|||||+|+|++. .... ..-..++|++.....+..+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~---------------- 73 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA---------------- 73 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------
Confidence 45689999999999999999999951 1110 1113455555433222211
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.++.|+||||.. .+.......+..+|++++|+|+.+
T Consensus 74 -~~~i~~iDtPGh~-------~f~~~~~~~~~~aD~~llVvda~~ 110 (396)
T PRK12735 74 -NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred -CcEEEEEECCCHH-------HHHHHHHhhhccCCEEEEEEECCC
Confidence 3579999999973 233444566778999999999876
No 217
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.98 E-value=2.8e-09 Score=96.81 Aligned_cols=135 Identities=16% Similarity=0.066 Sum_probs=76.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||+++++.+. ... .++ +|.......+.+.+. ...+.+|||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~~-~~~-~~~~~~~~~i~~~~~---------------~~~l~i~D~~g~~~~-- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YVQ-LES-PEGGRFKKEVLVDGQ---------------SHLLLIRDEGGAPDA-- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CCC-CCC-CCccceEEEEEECCE---------------EEEEEEEECCCCCch--
Confidence 489999999999999999987432 221 222 122222233444321 145889999998421
Q ss_pred cccccccccccchhccceEEEEEeccCCc---------------------ceEEecCccCCCCh-hHHHhHhhhcccHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSD-VDVINLELVFSDLDQ 194 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------------~v~~v~~~~dp~~d-i~~l~~el~l~d~~~ 194 (454)
...+.+|++++|+|.++.. +++.+.|+.|.... ...+ ..+.
T Consensus 61 ----------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v-------~~~~ 123 (158)
T cd04103 61 ----------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVI-------DDAR 123 (158)
T ss_pred ----------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc-------CHHH
Confidence 1246799999999987632 34455555443110 0000 0000
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
. +.+.+-........+||+++.|+.++++.+.+.
T Consensus 124 ~-~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 124 A-RQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred H-HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 0 111110011122348999999999999887653
No 218
>PLN03127 Elongation factor Tu; Provisional
Probab=98.98 E-value=4e-09 Score=111.42 Aligned_cols=103 Identities=20% Similarity=0.190 Sum_probs=69.6
Q ss_pred cccCCcEEEEEecCCCCCcHHHHHhhcC------Ccc---------ccCCCCcccccceeeeeeeCCCccchhcccccCc
Q 012870 52 KISMSLRAGIVGLPNVGKSTLFNAVVEN------GKA---------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116 (454)
Q Consensus 52 ~~~~~~~I~ivG~pNvGKSTL~NaLtg~------~~~---------~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~ 116 (454)
..+..+.|+++|.+|+|||||+++|++. ... ...-.+++|++.....+..+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------------- 122 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-------------- 122 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------------
Confidence 3456688999999999999999999832 111 11223677877654444332
Q ss_pred cccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCC
Q 012870 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKS 178 (454)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~ 178 (454)
..++.|+||||..+ +.......+..+|++++|+|+.+. .+ ++.+.|+.|.+.
T Consensus 123 ---~~~i~~iDtPGh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 123 ---KRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred ---CeEEEEEECCCccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 35799999999842 333334445679999999998652 12 345678888664
No 219
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.98 E-value=1.9e-09 Score=118.76 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=60.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccC----------CCCcccccceeeeeeeCCC---ccchh--cccccCccc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA----------NFPFCTIEPNVGIVAVPDP---RLHVL--SGLSKSQKA 118 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs----------~~p~tT~~~~~~~~~~~d~---r~~~l--~~~~~~~~~ 118 (454)
+..++|+|+|.||+|||||+|+|+....+.++ ..+++|+++....+..+.. +-..+ .-.+..-..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34578999999999999999999965544442 2466666544432221110 00000 000001111
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
-..++.|+||||..+ +.......+..+|++++|||+.
T Consensus 102 ~~~~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~ 138 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDAR 138 (632)
T ss_pred CCceEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECC
Confidence 135799999999642 2222334578999999999984
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.97 E-value=1.9e-09 Score=96.30 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=77.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||.+||.+++|||||+++|.|.... +..|. .+.+.+ .+|||||-.-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----~~KTq-----~i~~~~--------------------~~IDTPGEyiE~- 50 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQ-----AIEYYD--------------------NTIDTPGEYIEN- 50 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----cCccc-----eeEecc--------------------cEEECChhheeC-
Confidence 48999999999999999999964321 11221 122221 359999964322
Q ss_pred cccccccccccchhccceEEEEEeccCCc-------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN-------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~-------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~ 203 (454)
+.+....+....+||+|++|.|++++. +++.|.++.|...+ ...+++-.+.++
T Consensus 51 --~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~------------~~~i~~a~~~L~ 116 (143)
T PF10662_consen 51 --PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSD------------DANIERAKKWLK 116 (143)
T ss_pred --HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccc------------hhhHHHHHHHHH
Confidence 234455566778999999999998743 34555556554311 112222222222
Q ss_pred hcc--cCCCccccchHHHHHHHHHHH
Q 012870 204 KGK--AKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 204 ~~~--~~~~vSak~~~~~~~ll~~i~ 227 (454)
... +...+|+.+++|+++|.+.+.
T Consensus 117 ~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 117 NAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 221 123489999999998888764
No 221
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.97 E-value=1.6e-09 Score=93.41 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=51.9
Q ss_pred EEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCcccc
Q 012870 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (454)
Q Consensus 61 ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 140 (454)
++|.||+|||||+|+|++..... .....+..+........+.. ..++.+|||||........
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~~~-- 62 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGK---------------KVKLQIWDTAGQERFRSLR-- 62 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCE---------------EEEEEEEecCChHHHHhHH--
Confidence 58999999999999999544322 22222223333333332211 2469999999986433211
Q ss_pred cccccccchhccceEEEEEeccCC
Q 012870 141 LGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 141 l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
...++.+|++++|+|++++
T Consensus 63 -----~~~~~~~~~~i~v~d~~~~ 81 (157)
T cd00882 63 -----RLYYRGADGIILVYDVTDR 81 (157)
T ss_pred -----HHHhcCCCEEEEEEECcCH
Confidence 3346789999999998773
No 222
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.97 E-value=7.8e-10 Score=98.52 Aligned_cols=56 Identities=36% Similarity=0.485 Sum_probs=46.8
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
+++++|.||||||||+|+|++.....+++.|++|++.....+ + ..+.+|||||+.-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T------------------PTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C------------------CCEEEEECCCcCC
Confidence 899999999999999999998887789999999987654332 2 2489999999853
No 223
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.96 E-value=3.2e-09 Score=101.31 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=57.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCC-CCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~-~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
++|.++|.+++||||+.|.|+|...+..+. ...+|..+......+. +..+.+|||||+....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~-----------------g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD-----------------GRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET-----------------TEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec-----------------ceEEEEEeCCCCCCCc
Confidence 479999999999999999999888776652 3456777777666555 3579999999996544
Q ss_pred Cccccccccccc----chhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLS----HIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~----~ir~aD~il~VvD~~~ 163 (454)
...+...+.... .....+++|+|++...
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r 95 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR 95 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecCc
Confidence 332222222221 2346899999999763
No 224
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.96 E-value=5.9e-09 Score=98.70 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=48.8
Q ss_pred EecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCccccc
Q 012870 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGL 141 (454)
Q Consensus 62 vG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l 141 (454)
||.+|||||||+++++. ........|....+.....+.+... ...+.+|||||..+... +
T Consensus 1 vG~~~vGKTsLi~r~~~-~~f~~~~~~Tig~~~~~~~~~~~~~---------------~~~l~iwDt~G~e~~~~----l 60 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT-GEFEKKYVATLGVEVHPLVFHTNRG---------------PIRFNVWDTAGQEKFGG----L 60 (200)
T ss_pred CCCCCCCHHHHHHHHhc-CCCCCCCCCceeEEEEEEEEEECCE---------------EEEEEEEECCCchhhhh----h
Confidence 69999999999999994 3332222222112222222333221 24699999999865432 1
Q ss_pred ccccccchhccceEEEEEeccC
Q 012870 142 GNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 142 ~~~fl~~ir~aD~il~VvD~~~ 163 (454)
....++.+|++++|+|+++
T Consensus 61 ---~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 61 ---RDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred ---hHHHhcCCCEEEEEEECCC
Confidence 1234778999999999853
No 225
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.95 E-value=4.5e-09 Score=111.94 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=55.9
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCC----------CCccc----------------------ccceeeeee
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FPFCT----------------------IEPNVGIVA 100 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~----------~p~tT----------------------~~~~~~~~~ 100 (454)
.+..++|+++|.+|+|||||+++|+......... .+++| ++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3556899999999999999999998443322211 13333 222222221
Q ss_pred eCCCccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 101 ~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.+ ..++.|+||||..+ +.......++.+|++++|||+.+
T Consensus 104 ~~-----------------~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 104 TE-----------------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARK 142 (474)
T ss_pred cC-----------------CcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 11 35799999999532 33333444689999999999853
No 226
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.95 E-value=6.1e-09 Score=96.79 Aligned_cols=150 Identities=18% Similarity=0.130 Sum_probs=81.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.+|+|||||+++++.+. ......| ++.+.....+.+.+. ...+.+|||||......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~-~~~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE-FPEEYHP-TVFENYVTDCRVDGK---------------PVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCcccCC-cccceEEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 489999999999999999998332 2222222 222222233333321 23588999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHh--hhcccHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLE--LVFSDLDQ 194 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~e--l~l~d~~~ 194 (454)
. .. ..++.+|++++|+|+.+. .+++.+.|+.|...+....... -...+.+.
T Consensus 65 ~----~~---~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~ 137 (187)
T cd04129 65 L----RP---LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQ 137 (187)
T ss_pred c----ch---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHH
Confidence 1 11 135789999999997652 2355666776642211000000 00011111
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
........ .......+||++|.|+.++++.+.+.+.
T Consensus 138 ~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 138 GKRVAKEI-GAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred HHHHHHHh-CCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 11111111 1111234899999999999998876553
No 227
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.95 E-value=1.1e-09 Score=99.46 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=60.7
Q ss_pred EEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC------------------Cccchh-----------
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD------------------PRLHVL----------- 109 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d------------------~r~~~l----------- 109 (454)
|+++|..++|||||+|+|+|....+++.-| ||..|+.-...-.. ..+..+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 789999999999999999987767766665 44444322221110 000011
Q ss_pred c----------ccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 110 S----------GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 110 ~----------~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. ....+.......+.|+||||+.........+ ..+.+..+|++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~---~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEI---TEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHH---HHHHHSTTEEEEEEEETTS
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhHHH---HHHhhccCCEEEEEeccCc
Confidence 0 0111111223569999999996644333233 3444578999999999854
No 228
>PRK12736 elongation factor Tu; Reviewed
Probab=98.95 E-value=3.1e-09 Score=110.69 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=89.0
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCc------c---------ccCCCCcccccceeeeeeeCCCccchhcccccCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGK------A---------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~------~---------~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~ 117 (454)
.+..++|+++|.+++|||||+++|++... . ...-..++|++.....+..+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------------- 73 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------------- 73 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC---------------
Confidence 44568999999999999999999995211 0 01114466665533322211
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCChh
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDV 180 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~di 180 (454)
..++.|+||||..+ +.......+..+|++++|+|+.+. .+ ++.+.|+.|.+.+-
T Consensus 74 --~~~i~~iDtPGh~~-------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 74 --KRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred --CcEEEEEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH
Confidence 25689999999632 333445556789999999998752 12 34567888865322
Q ss_pred HHHhHhhhcccHHHHHHHHHHHHh---cccCCCccccchH--------HHHHHHHHHHHhhh
Q 012870 181 DVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKED--------AEKAALEKIQQALM 231 (454)
Q Consensus 181 ~~l~~el~l~d~~~l~~~~~~~~~---~~~~~~vSak~~~--------~~~~ll~~i~~~L~ 231 (454)
+.. +++ .+.+...+..+.- ..+..++||++|. ++..|++.+.+.++
T Consensus 145 ~~~-~~i----~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 145 ELL-ELV----EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHH-HHH----HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 211 100 0112222222211 1123458999873 56778888877775
No 229
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.94 E-value=9.1e-09 Score=97.76 Aligned_cols=145 Identities=19% Similarity=0.107 Sum_probs=82.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeee--CCCccchhcccccCccccCceeEEEecCCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV--PDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~--~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
..+||+++|.+|||||||++++..+. ..... .+|.........+ ... ...+.+|||||..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~-~~~~~--~~t~~~~~~~~~~~~~~~---------------~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGE-FEKKY--IPTLGVEVHPLKFYTNCG---------------PICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCC-CCCCC--CCccceEEEEEEEEECCe---------------EEEEEEEECCCch
Confidence 45899999999999999998665222 22111 2333333322222 111 2468999999974
Q ss_pred CCCCcccccccccccchhccceEEEEEeccC-------------------CcceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~-------------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.... + ....++.+|++++|+|+++ +.++..+.|+.|.... .... +
T Consensus 70 ~~~~----~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-~~~~--------~ 133 (215)
T PTZ00132 70 KFGG----L---RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-QVKA--------R 133 (215)
T ss_pred hhhh----h---hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-cCCH--------H
Confidence 3321 1 1223567899999999874 2334456666664321 0100 0
Q ss_pred HHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCC
Q 012870 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236 (454)
Q Consensus 194 ~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~ 236 (454)
.. . +.+. .......+|++++.++.+.+..+.+.+...+.+
T Consensus 134 ~~-~-~~~~-~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 134 QI-T-FHRK-KNLQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173 (215)
T ss_pred HH-H-HHHH-cCCEEEEEeCCCCCCHHHHHHHHHHHHhhcccc
Confidence 00 0 1110 011223489999999998888888777655543
No 230
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.93 E-value=2.3e-08 Score=97.10 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccc-----cCCC------------CcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQ-----AANF------------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~-----vs~~------------p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
.|+++|.+|+|||||+++|+....+. +... -+.|.......+... +
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~-----------------~ 63 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE-----------------D 63 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC-----------------C
Confidence 38999999999999999998533221 1110 011111111122221 3
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.++.+|||||..+.. ......++.+|++++|+|+.+
T Consensus 64 ~~i~liDTPG~~~f~-------~~~~~~l~~aD~~IlVvd~~~ 99 (237)
T cd04168 64 TKVNLIDTPGHMDFI-------AEVERSLSVLDGAILVISAVE 99 (237)
T ss_pred EEEEEEeCCCccchH-------HHHHHHHHHhCeEEEEEeCCC
Confidence 579999999996432 233456788999999999853
No 231
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.93 E-value=1.9e-09 Score=86.17 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=42.2
Q ss_pred eeeEEecCCCCHHHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeE
Q 012870 351 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKY 417 (454)
Q Consensus 351 ~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~ 417 (454)
.++|++++|+||.|+|++||+||.++|++|.++ | . .+..|+++.++ |+..
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k-~--~~~vg~~~~L~dgDvV~ 73 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R-T--GRRVGEDYELKHRDVIK 73 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e-C--CEEeCCCcEecCCCEEE
Confidence 479999999999999999999999999999652 3 2 58889998888 5543
No 232
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.92 E-value=7.9e-10 Score=114.91 Aligned_cols=61 Identities=34% Similarity=0.397 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+.||+||||||||||++|+|.|.+.+.|+..||.|+..++-.+. ..+.|.|.||++-+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls--------------------~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS--------------------PSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC--------------------CCceecCCCCccccC
Confidence 589999999999999999999999999999999999988776653 348999999998665
Q ss_pred C
Q 012870 136 S 136 (454)
Q Consensus 136 ~ 136 (454)
.
T Consensus 374 f 374 (562)
T KOG1424|consen 374 F 374 (562)
T ss_pred C
Confidence 4
No 233
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.91 E-value=3.7e-09 Score=115.39 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=86.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccC--------C------CCcccccceeeeeeeC--CCccchhcccccCccccC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVP--DPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs--------~------~p~tT~~~~~~~~~~~--d~r~~~l~~~~~~~~~~~ 120 (454)
..|+|||.+++|||||+++|+....+... + ..+.|.+.....+.+. +.. .
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~--------------~ 69 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGE--------------T 69 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCC--------------E
Confidence 47999999999999999999843221111 0 1134433322222221 100 2
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc----------------ceEEecCccCCCChhHHHh
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVIN 184 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~v~~v~~~~dp~~di~~l~ 184 (454)
.++.||||||..+... .....++.||++++|+|+++.. +++.+.|+.|....
T Consensus 70 ~~l~liDTPG~~dF~~-------~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~----- 137 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSY-------EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSA----- 137 (595)
T ss_pred EEEEEEECCCcHHHHH-------HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCcc-----
Confidence 4689999999975432 2334578899999999997631 34556677774211
Q ss_pred HhhhcccHHHHHHHHHHHHhcc--cCCCccccchHHHHHHHHHHHHhhhC
Q 012870 185 LELVFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 185 ~el~l~d~~~l~~~~~~~~~~~--~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.+.+...+....... ....+||++|.|+.++++.+.+.++.
T Consensus 138 ------~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 138 ------DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ------CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 0111111111111110 12348999999999999999988874
No 234
>PRK00007 elongation factor G; Reviewed
Probab=98.89 E-value=1.8e-08 Score=112.18 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=60.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc-----cccC------------CCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK-----AQAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~-----~~vs------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
..+|+|+|.+|+|||||+|+|+.... ..++ ...++|++.....+...
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~---------------- 73 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---------------- 73 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC----------------
Confidence 35899999999999999999962111 1122 24567777666666554
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.++.|+||||..+. .......++.+|++++|+|+.+
T Consensus 74 -~~~~~liDTPG~~~f-------~~ev~~al~~~D~~vlVvda~~ 110 (693)
T PRK00007 74 -DHRINIIDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVG 110 (693)
T ss_pred -CeEEEEEeCCCcHHH-------HHHHHHHHHHcCEEEEEEECCC
Confidence 357999999998542 2235566788999999999854
No 235
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.88 E-value=2.5e-09 Score=98.41 Aligned_cols=58 Identities=33% Similarity=0.434 Sum_probs=47.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
..++++++|.||+|||||+|+|++.....+++.|+||.+.....+ + ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~--~------------------~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI--S------------------PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe--c------------------CCEEEEECCCCC
Confidence 447999999999999999999997777788999999987655433 1 248999999983
No 236
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.87 E-value=1.5e-08 Score=112.68 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=68.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccc-----cCC------------CCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-----AAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~-----vs~------------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
..+|+|+|.+|+|||||+|+|+...... +.+ ..++|++.....+..+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~---------------- 73 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK---------------- 73 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC----------------
Confidence 3589999999999999999997322111 111 3456666666666554
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
+.++.||||||..+... .....++.+|++++|+|+.+. .+++.+.|+.|..
T Consensus 74 -~~~i~liDTPG~~~~~~-------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 74 -GHRINIIDTPGHVDFTV-------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT 140 (689)
T ss_pred -CeEEEEEECCCCcchhH-------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 36799999999965321 234567889999999998762 2456677888843
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=98.87 E-value=8.2e-09 Score=107.61 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=59.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCC------cc---------ccCCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENG------KA---------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~------~~---------~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
+..++|+++|.+++|||||+++|++.. .. ...-..++|++.....+...
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~---------------- 73 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE---------------- 73 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------
Confidence 345789999999999999999999521 00 01114566766543333222
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.++.|+||||..+ +.......+..||++++|+|+.+
T Consensus 74 -~~~i~~iDtPG~~~-------f~~~~~~~~~~aD~~llVVDa~~ 110 (396)
T PRK00049 74 -KRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred -CeEEEEEECCCHHH-------HHHHHHhhhccCCEEEEEEECCC
Confidence 35799999999742 33344455778999999999876
No 238
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.7e-09 Score=93.53 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=104.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+|+.|+|...+|||||+-+-. .+....+-+....++.....+...++|+ .+++|||+|+...
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~-ddSFt~afvsTvGidFKvKTvyr~~kRi---------------klQiwDTagqEry 83 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVYRSDKRI---------------KLQIWDTAGQERY 83 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhh-ccccccceeeeeeeeEEEeEeeecccEE---------------EEEEEecccchhh
Confidence 44699999999999999999999 5555555555556666666666667663 5999999999652
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
..-.-..+|.|++++++.|..++.+ +..+ +.-.
T Consensus 84 -------rtiTTayyRgamgfiLmyDitNeeS-------------f~sv------------qdw~--------------- 116 (193)
T KOG0093|consen 84 -------RTITTAYYRGAMGFILMYDITNEES-------------FNSV------------QDWI--------------- 116 (193)
T ss_pred -------hHHHHHHhhccceEEEEEecCCHHH-------------HHHH------------HHHH---------------
Confidence 2233456899999999999754322 1111 0000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..| . ...| ..-|+++|+||.+ +.+. +-...++.+.++.+.|..+
T Consensus 117 ---------tqI----k------tysw--------------~naqvilvgnKCD--md~e-Rvis~e~g~~l~~~LGfef 160 (193)
T KOG0093|consen 117 ---------TQI----K------TYSW--------------DNAQVILVGNKCD--MDSE-RVISHERGRQLADQLGFEF 160 (193)
T ss_pred ---------HHh----e------eeec--------------cCceEEEEecccC--Cccc-eeeeHHHHHHHHHHhChHH
Confidence 000 0 0012 4678999999985 4332 3445678888888889999
Q ss_pred EEechhhhHHhcC
Q 012870 295 VTISAQVEAELTE 307 (454)
Q Consensus 295 v~iSA~~E~~l~~ 307 (454)
..+|||..-++.+
T Consensus 161 FEtSaK~NinVk~ 173 (193)
T KOG0093|consen 161 FETSAKENINVKQ 173 (193)
T ss_pred hhhcccccccHHH
Confidence 9999997766643
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.84 E-value=1.4e-08 Score=105.87 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=58.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcC------Cccc---------cCCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~------~~~~---------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
+..++|+++|.+++|||||+++|++. .... ..-..++|++.....+..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~---------------- 73 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE---------------- 73 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------
Confidence 44588999999999999999999832 1111 1112577776543332211
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+.++.||||||..+ +.......+..+|++++|+|+.+
T Consensus 74 -~~~~~liDtpGh~~-------f~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 74 -NRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred -CEEEEEEECCchHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 35699999999843 23344555678999999999976
No 240
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.84 E-value=3.3e-09 Score=84.53 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=42.4
Q ss_pred CeEEecCCCCC----eeeEEecCCCCHHHHhhhhchhhhhCceEEEEee
Q 012870 340 LRTYFTSGEKE----TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVA 384 (454)
Q Consensus 340 li~ffT~g~~e----~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~ 384 (454)
||++||+.+++ .++.++++|+|+.|+|.+||+|+.+.|++|.||+
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g 49 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWG 49 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEec
Confidence 68999998755 6899999999999999999999999999999998
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.83 E-value=1.3e-08 Score=106.42 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=52.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCC----------CC----------------------cccccceeeeeeeCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FP----------------------FCTIEPNVGIVAVPDP 104 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~----------~p----------------------~tT~~~~~~~~~~~d~ 104 (454)
++|+++|.+++|||||+++|+......... .. +.|++.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 479999999999999999997432221110 01 22233322222222
Q ss_pred ccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
..++.|+||||..+ +.......+..+|++++|+|+.+
T Consensus 79 ---------------~~~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 79 ---------------KRKFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred ---------------CeEEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 35799999999643 22233445789999999999853
No 242
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.83 E-value=4e-09 Score=94.87 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=98.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++..+||.+-||||+|+..+|.++-+..+ -|...+|.-...+.+.+.. ..++++|||+|..+..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~--------------riklqlwdtagqerfr 72 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGY--------------RIKLQLWDTAGQERFR 72 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCc--------------EEEEEEeeccchHHHH
Confidence 468899999999999999999955444444 3555544444444443211 2469999999997655
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
+ -..+..|++-.++.|.|.++..+..|+.+|+ +| ..
T Consensus 73 s-------itksyyrnsvgvllvyditnr~sfehv~~w~----------~e----------a~----------------- 108 (213)
T KOG0091|consen 73 S-------ITKSYYRNSVGVLLVYDITNRESFEHVENWV----------KE----------AA----------------- 108 (213)
T ss_pred H-------HHHHHhhcccceEEEEeccchhhHHHHHHHH----------HH----------HH-----------------
Confidence 4 2345578888999999987654433322211 00 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcE-EEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPI-IYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi-~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
-.+. + -.|++ +.|.-|. |+... +....++.++++..+|..|
T Consensus 109 ------------m~~q-~----------------------P~k~VFlLVGhKs--DL~Sq-RqVt~EEaEklAa~hgM~F 150 (213)
T KOG0091|consen 109 ------------MATQ-G----------------------PDKVVFLLVGHKS--DLQSQ-RQVTAEEAEKLAASHGMAF 150 (213)
T ss_pred ------------HhcC-C----------------------CCeeEEEEecccc--chhhh-ccccHHHHHHHHHhcCceE
Confidence 0000 1 12222 3355565 44433 3667888999999999999
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
|.+||+...|+
T Consensus 151 VETSak~g~NV 161 (213)
T KOG0091|consen 151 VETSAKNGCNV 161 (213)
T ss_pred EEecccCCCcH
Confidence 99999999887
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=98.82 E-value=2e-08 Score=106.88 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=66.9
Q ss_pred cccCCcEEEEEecCCCCCcHHHHHhhcCCcccc---------------CCCCcccccceeeeeeeCCCccchhcccccCc
Q 012870 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQA---------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116 (454)
Q Consensus 52 ~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~v---------------s~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~ 116 (454)
..+..++|+++|.+|+|||||+++|++...... ....+.|++.....+..+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-------------- 142 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE-------------- 142 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------------
Confidence 345568899999999999999999995322111 112344443333222222
Q ss_pred cccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc----------------c-eEEecCccCCCC
Q 012870 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------D-IVHVNGKVDPKS 178 (454)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~-v~~v~~~~dp~~ 178 (454)
+.++.|+||||..+ +.......+..+|++++|||+.+.. + ++.+.|+.|.+.
T Consensus 143 ---~~~i~liDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 143 ---NRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred ---CcEEEEEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 35789999999853 3333455567899999999987631 2 445678888653
No 244
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.82 E-value=2.5e-08 Score=108.68 Aligned_cols=112 Identities=22% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCc-ccccceeeeeeeCCCccchhcc-ccc--CccccCceeEEEecCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSG-LSK--SQKAVPASVEFVDIAG 130 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-tT~~~~~~~~~~~d~r~~~l~~-~~~--~~~~~~~~i~lvDtpG 130 (454)
.++.|+++|.+|+|||||+|+|+|... ++..|+ .|.+ .|...++-......+. ... +.+..-..+.||||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~--ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQH--IGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEe--eceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 357899999999999999999995432 233332 3322 2221111100000000 000 0000001378999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCC
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPK 177 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~ 177 (454)
...... .....++.+|++++|+|+.+ ..+++.+.|+.|..
T Consensus 81 ~e~f~~-------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 81 HEAFTN-------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred hHHHHH-------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 854332 11234567999999999876 23467788888854
No 245
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.81 E-value=5.5e-09 Score=89.25 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCcc---ccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~---~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
||.++|.+|||||||+++|.+.... ...+....|.......+..+ ...+.+||++|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD-----------------RQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE-----------------EEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC-----------------ceEEEEEecCcccee
Confidence 6999999999999999999965544 11111122211111111111 124889999998432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
.... . ..+..+|++++|+|+++.
T Consensus 64 ~~~~-----~--~~~~~~d~~ilv~D~s~~ 86 (119)
T PF08477_consen 64 YSQH-----Q--FFLKKADAVILVYDLSDP 86 (119)
T ss_dssp HCTS-----H--HHHHHSCEEEEEEECCGH
T ss_pred cccc-----c--chhhcCcEEEEEEcCCCh
Confidence 2211 1 127789999999998653
No 246
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.81 E-value=7.6e-09 Score=111.54 Aligned_cols=92 Identities=25% Similarity=0.242 Sum_probs=60.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
....+|+++|.|||||||++|+|+|...+.++..+.+|........... +.++.+|||||+..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id-----------------G~~L~VIDTPGL~d 178 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ-----------------GVKIRVIDTPGLKS 178 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC-----------------CceEEEEECCCCCc
Confidence 3457899999999999999999998877777776434434433322222 35699999999986
Q ss_pred CCCcc---cccccccccchh--ccceEEEEEecc
Q 012870 134 GASQG---EGLGNKFLSHIR--EVDSILQVVRCF 162 (454)
Q Consensus 134 ~~~~~---~~l~~~fl~~ir--~aD~il~VvD~~ 162 (454)
..... ..+.......+. .+|++|+|.+..
T Consensus 179 t~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 179 SASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLD 212 (763)
T ss_pred cccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 53211 122222222222 479999998753
No 247
>PRK12739 elongation factor G; Reviewed
Probab=98.81 E-value=2.1e-08 Score=111.57 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=70.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc-----cccC------------CCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK-----AQAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~-----~~vs------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
..+|+|||.+|+|||||+|+|+.... ..+. ...++|++.....+...
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~---------------- 71 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---------------- 71 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC----------------
Confidence 45899999999999999999973211 1122 14567777666666554
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
+.++.|+||||..+ +.......++.+|++++|+|+.+. .+.+.+.|+.|..
T Consensus 72 -~~~i~liDTPG~~~-------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 72 -GHRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred -CEEEEEEcCCCHHH-------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 36799999999854 233456678899999999998763 2456677888854
No 248
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.80 E-value=3.4e-09 Score=106.98 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=61.3
Q ss_pred CCCCCcch-hhhhhhhhccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccc
Q 012870 35 VLGITTTS-SRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113 (454)
Q Consensus 35 ~~g~~~~~-~~~~~~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~ 113 (454)
.+|-|... .+.++.+-...+..+.||+|||||+||||++|+|-...+|.+++.|+.|.-.+.-++.
T Consensus 285 sfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm------------- 351 (572)
T KOG2423|consen 285 SFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM------------- 351 (572)
T ss_pred ccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH-------------
Confidence 34444432 2333444344556789999999999999999999988999999999999765544432
Q ss_pred cCccccCceeEEEecCCccCCCC
Q 012870 114 KSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 114 ~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
..|.+||.||++.+..
T Consensus 352 -------krIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 352 -------KRIFLIDCPGVVYPSS 367 (572)
T ss_pred -------hceeEecCCCccCCCC
Confidence 3589999999997765
No 249
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.80 E-value=3.7e-09 Score=107.12 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=59.6
Q ss_pred hhhhhhhccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCcee
Q 012870 44 RRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (454)
Q Consensus 44 ~~~~~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i 123 (454)
+..+++....+...+|||||+|||||||++|+|.....+.+++.||.|+.-..-.+ +..|
T Consensus 240 lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L--------------------dk~i 299 (435)
T KOG2484|consen 240 LGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL--------------------DKKI 299 (435)
T ss_pred hcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec--------------------cCCc
Confidence 35556666677889999999999999999999998888999999999975443332 2569
Q ss_pred EEEecCCccCCCCc
Q 012870 124 EFVDIAGLVKGASQ 137 (454)
Q Consensus 124 ~lvDtpGl~~~~~~ 137 (454)
.|+|.||++.....
T Consensus 300 ~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 300 RLLDSPGIVPPSID 313 (435)
T ss_pred eeccCCceeecCCC
Confidence 99999999866543
No 250
>PRK13796 GTPase YqeH; Provisional
Probab=98.79 E-value=3.9e-09 Score=108.86 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=45.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC-----CccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~-----~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
..++.+||.||||||||+|+|.+. ..+.+++.|+||++.....+ + ....++||||
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~------------------~~~~l~DTPG 219 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D------------------DGSFLYDTPG 219 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C------------------CCcEEEECCC
Confidence 358999999999999999999843 24558999999998655433 2 2257999999
Q ss_pred ccCC
Q 012870 131 LVKG 134 (454)
Q Consensus 131 l~~~ 134 (454)
+...
T Consensus 220 i~~~ 223 (365)
T PRK13796 220 IIHR 223 (365)
T ss_pred cccc
Confidence 9743
No 251
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.78 E-value=1.9e-08 Score=105.28 Aligned_cols=164 Identities=22% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc--cccCCCCcccccceeeeeeeC-CC------cc--chhcccccCccccCcee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVP-DP------RL--HVLSGLSKSQKAVPASV 123 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~--~~vs~~p~tT~~~~~~~~~~~-d~------r~--~~l~~~~~~~~~~~~~i 123 (454)
...+|+++|.+|+|||||+++|++... ....-.-+.|.+......... .+ .+ ...++........+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 347899999999999999999985211 001111123332211111000 00 00 00000000000013469
Q ss_pred EEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHhH
Q 012870 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINL 185 (454)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~~ 185 (454)
.+|||||..+ +...+...+..+|++++|+|+.+.. +++.+.|+.|...+-.. ..
T Consensus 83 ~liDtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~-~~ 154 (406)
T TIGR03680 83 SFVDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKA-LE 154 (406)
T ss_pred EEEECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHH-HH
Confidence 9999999732 3344566677899999999998532 23445566664421110 00
Q ss_pred hhhcccHHHHHHHHHHH-HhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 186 ELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~-~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
..+.+...+... ....+..++||++|.|+.+|++.+...++
T Consensus 155 -----~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 155 -----NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred -----HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 001111111110 00112345899999999999999988775
No 252
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.78 E-value=8.9e-09 Score=91.18 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++..|+|.|+||||+|+-.+. .+.+.-+....+..|.....+++++.+ ..+++|||+|.....
T Consensus 8 LfkllIigDsgVGKssLl~rF~-ddtFs~sYitTiGvDfkirTv~i~G~~---------------VkLqIwDtAGqErFr 71 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFA-DDTFSGSYITTIGVDFKIRTVDINGDR---------------VKLQIWDTAGQERFR 71 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHh-hcccccceEEEeeeeEEEEEeecCCcE---------------EEEEEeecccHHHHH
Confidence 3577899999999999999998 555555544455568888889888776 469999999986443
Q ss_pred CcccccccccccchhccceEEEEEeccCC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
. ..-...+..+++++|.|+...
T Consensus 72 t-------itstyyrgthgv~vVYDVTn~ 93 (198)
T KOG0079|consen 72 T-------ITSTYYRGTHGVIVVYDVTNG 93 (198)
T ss_pred H-------HHHHHccCCceEEEEEECcch
Confidence 2 112335788999999998643
No 253
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.77 E-value=5.6e-09 Score=107.51 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=47.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCC-----ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~-----~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
.+|.+||.||||||||+|+|++.. .+.++++|+||++.+...+ + ..+.++||||+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~--~------------------~~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--D------------------DGHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe--C------------------CCCEEEECCCC
Confidence 689999999999999999999632 4679999999988765443 2 24789999999
Q ss_pred cCC
Q 012870 132 VKG 134 (454)
Q Consensus 132 ~~~ 134 (454)
...
T Consensus 215 ~~~ 217 (360)
T TIGR03597 215 INS 217 (360)
T ss_pred CCh
Confidence 754
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.74 E-value=1.8e-08 Score=99.42 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=53.1
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccc--cCC-CC--------------cccccceeeeeeeCCCccchhcccccCccccC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQ--AAN-FP--------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~--vs~-~p--------------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
.|+|+|.+|+|||||+|+|.+..... .+. .. +.|..+....+... +
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~-----------------~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK-----------------G 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC-----------------C
Confidence 48999999999999999997432211 100 01 22222222223222 3
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
.++.+|||||... +.......++.+|++++|+|+...
T Consensus 64 ~~i~liDtPG~~~-------f~~~~~~~l~~aD~~i~Vvd~~~g 100 (268)
T cd04170 64 HKINLIDTPGYAD-------FVGETRAALRAADAALVVVSAQSG 100 (268)
T ss_pred EEEEEEECcCHHH-------HHHHHHHHHHHCCEEEEEEeCCCC
Confidence 5799999999853 223345567889999999998763
No 255
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.72 E-value=1.4e-08 Score=89.83 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=62.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+.+.+||.-|+|||||+|.+..++. +.+-..|+-.+...++-. ...+.+||.||.-..
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkg-----------------nvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRF 78 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccC-----------------ceEEEEEecCCCccH
Confidence 458999999999999999999973222 223344556666666555 367999999999655
Q ss_pred CCcccccccccccchhccceEEEEEeccCCc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~ 165 (454)
.+ .+-...|.+|+|++|||+++++
T Consensus 79 rs-------mWerycR~v~aivY~VDaad~~ 102 (186)
T KOG0075|consen 79 RS-------MWERYCRGVSAIVYVVDAADPD 102 (186)
T ss_pred HH-------HHHHHhhcCcEEEEEeecCCcc
Confidence 44 3344589999999999999854
No 256
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.72 E-value=6.1e-08 Score=106.00 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=86.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccC--------------CCCcccccceeeeeeeCCCccchhcccccCccccCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs--------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~ 121 (454)
...++|+|..++|||||+.+|+........ ..-+.|.......+.+.. ...-..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~------------~dg~~~ 74 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKA------------KDGETY 74 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEc------------cCCCcE
Confidence 358999999999999999999842211100 011344433332222210 000035
Q ss_pred eeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHh
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVIN 184 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~ 184 (454)
++.||||||..+... .....++.||++++|+|+++. .+++.+.|+.|... +...+
T Consensus 75 ~lnLiDTPGh~dF~~-------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v- 146 (600)
T PRK05433 75 ILNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERV- 146 (600)
T ss_pred EEEEEECCCcHHHHH-------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHH-
Confidence 699999999975432 233457789999999999763 23456667777431 11111
Q ss_pred HhhhcccHHHHHHHHHHHHhcc--cCCCccccchHHHHHHHHHHHHhhhC
Q 012870 185 LELVFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 185 ~el~l~d~~~l~~~~~~~~~~~--~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
...+....... ...++||++|.|+.++++.+.+.++.
T Consensus 147 -----------~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 147 -----------KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -----------HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 11111110110 11348999999999999999988874
No 257
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.71 E-value=2.6e-08 Score=98.49 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=52.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCcccc--CC------CCcccccceeeeeeeCCCccchhcccccCccccCceeEEEec
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQA--AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~v--s~------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDt 128 (454)
..|+|+|.+|+|||||+|+|+....+.. +. ...++.|.... ...|-..+.....+-..-+.++.+|||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~----e~~rg~si~~~~~~~~~~~~~i~liDT 78 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEI----EKQRGISVTSSVMQFEYRDCVINLLDT 78 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHH----HHhCCCCeEEEEEEEeeCCEEEEEEEC
Confidence 3699999999999999999984322211 10 01111111100 000000000000001111467999999
Q ss_pred CCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 129 pGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
||..+.. ......++.+|++++|+|+++
T Consensus 79 PG~~df~-------~~~~~~l~~aD~~IlVvda~~ 106 (267)
T cd04169 79 PGHEDFS-------EDTYRTLTAVDSAVMVIDAAK 106 (267)
T ss_pred CCchHHH-------HHHHHHHHHCCEEEEEEECCC
Confidence 9985422 223455788999999999865
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.70 E-value=3.4e-08 Score=103.46 Aligned_cols=165 Identities=21% Similarity=0.217 Sum_probs=89.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcC--CccccCCCCcccccceeeeeeeCC-CccchhcccccCc---------cccCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVEN--GKAQAANFPFCTIEPNVGIVAVPD-PRLHVLSGLSKSQ---------KAVPA 121 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~--~~~~vs~~p~tT~~~~~~~~~~~d-~r~~~l~~~~~~~---------~~~~~ 121 (454)
+..++|+++|..++|||||+.+|++. +.....-..+.|.+.......... ..+ ...+.+... .....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDC-EEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEeccccccccccccc-Ccccccccccccccccccccccc
Confidence 45589999999999999999999852 111111123455543322221100 000 000001000 00124
Q ss_pred eeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHH
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVI 183 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l 183 (454)
++.||||||.. .+...++..+..+|++++|+|+.++. +++.+.|+.|...+-...
T Consensus 86 ~i~liDtPG~~-------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 86 RVSFVDAPGHE-------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEEEEECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHH
Confidence 79999999963 24455666677889999999998531 234455666643211100
Q ss_pred hHhhhcccHHHHHHHHHHH-HhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 184 NLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 184 ~~el~l~d~~~l~~~~~~~-~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
. ..+.+...+... ....+..++||+++.|+.+|++.+...++.
T Consensus 159 ~------~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 E------NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred H------HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 0 000111111000 001122348999999999999999887753
No 259
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.70 E-value=2.1e-08 Score=90.39 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=45.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
...++.++|.||+|||||+|+|.+.....+++.+++|.+.. .+..+ ..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKIT------------------SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEcC------------------CCEEEEECcCC
Confidence 45789999999999999999999777778888999886543 22222 35899999996
No 260
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.69 E-value=4.9e-08 Score=92.91 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=52.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCcccc---CCCC---------------cccccceeeeeeeCCCccchhcccccCcccc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQA---ANFP---------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~v---s~~p---------------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~ 119 (454)
+|+|+|.+++|||||+++|++...... .... ++|.+.....+.+. .....
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~------------~~~~~ 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLP------------DSKGK 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEE------------cCCCC
Confidence 589999999999999999995433221 0011 11111111111111 00011
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+.+|||||..+.. ......++.+|++++|+|+.+
T Consensus 70 ~~~i~iiDtpG~~~f~-------~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 70 SYLFNIIDTPGHVNFM-------DEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred EEEEEEEECCCCcchH-------HHHHHHHHhCCEEEEEEECCC
Confidence 2568999999986432 234556789999999999865
No 261
>PRK10218 GTP-binding protein; Provisional
Probab=98.68 E-value=8.4e-08 Score=104.76 Aligned_cols=145 Identities=18% Similarity=0.117 Sum_probs=86.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCC---------------CCcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~---------------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
..+|+|+|.+++|||||+++|+......... ..+.|.......+... +
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-----------------~ 67 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-----------------D 67 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-----------------C
Confidence 4589999999999999999999532221111 1233333333333222 3
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC-ChhHHH
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK-SDVDVI 183 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~-~di~~l 183 (454)
.++.+|||||..+... .....++.+|++++|+|+.+. .+.+.+.|+.|-. .+...+
T Consensus 68 ~~inliDTPG~~df~~-------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~v 140 (607)
T PRK10218 68 YRINIVDTPGHADFGG-------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWV 140 (607)
T ss_pred EEEEEEECCCcchhHH-------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHH
Confidence 5799999999865432 234457899999999999763 2346677888843 222221
Q ss_pred hHhhhcccHHHHHHHHHHHH-----hcccCCCccccchH----------HHHHHHHHHHHhhhC
Q 012870 184 NLELVFSDLDQIEKRMEKLK-----KGKAKDSQSKLKED----------AEKAALEKIQQALMD 232 (454)
Q Consensus 184 ~~el~l~d~~~l~~~~~~~~-----~~~~~~~vSak~~~----------~~~~ll~~i~~~L~~ 232 (454)
.+++ ...+..+. ...+..++||++|. ++..|++.+...+|.
T Consensus 141 l~ei--------~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 141 VDQV--------FDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred HHHH--------HHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 1111 11110000 01122347888887 477889999888874
No 262
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.67 E-value=3.5e-08 Score=95.03 Aligned_cols=91 Identities=15% Similarity=0.019 Sum_probs=58.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC--CccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN--GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~--~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
-..|+|+|.|++|||||+|.|+|. .-......+.||+.......+.+... ..++.++||||+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~--------------~~~v~~lDteG~~~ 72 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGK--------------EHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCC--------------cceEEEEecCCcCc
Confidence 357899999999999999999976 33334445778876555554443111 35799999999964
Q ss_pred CCCcccccccccccchh--ccceEEEEEec
Q 012870 134 GASQGEGLGNKFLSHIR--EVDSILQVVRC 161 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir--~aD~il~VvD~ 161 (454)
.... .......+..+. -+|++++.++.
T Consensus 73 ~~~~-~~~~~~~~~~l~~llss~~i~n~~~ 101 (224)
T cd01851 73 RERG-EFEDDARLFALATLLSSVLIYNSWE 101 (224)
T ss_pred cccC-chhhhhHHHHHHHHHhCEEEEeccC
Confidence 3321 101112222233 38899888875
No 263
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.67 E-value=1.8e-07 Score=88.53 Aligned_cols=152 Identities=19% Similarity=0.123 Sum_probs=84.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+||+++|.+|||||||+|+|.+. .......|..+ ....+....+..+ ..++.+|||||+.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~-~~~~~~~~t~~-~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~ 69 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD-EFPEGYPPTIG-NLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRS 69 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC-cCcccCCCcee-eeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHH
Confidence 79999999999999999999944 33322223222 2222222222111 24589999999965332
Q ss_pred cccccccccccchhccceEEEEEeccC---------------------CcceEEecCccCCCChhHHHhHhhh----ccc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELV----FSD 191 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~---------------------~~~v~~v~~~~dp~~di~~l~~el~----l~d 191 (454)
..-...+.++++++|+|... ..+++.+.|+.|...+......... ...
T Consensus 70 -------~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (219)
T COG1100 70 -------LRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVV 142 (219)
T ss_pred -------HHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcc
Confidence 22234578999999999765 1346778888885543222111000 001
Q ss_pred HHHHHHHHHHHHh-cccCCCcccc--chHHHHHHHHHHHHhhh
Q 012870 192 LDQIEKRMEKLKK-GKAKDSQSKL--KEDAEKAALEKIQQALM 231 (454)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~vSak--~~~~~~~ll~~i~~~L~ 231 (454)
............. .......|++ ++.++..++..+...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 143 LLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 1111111110000 1111226777 88888888877766664
No 264
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.65 E-value=3e-08 Score=88.78 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=66.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCccccc--ceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE--PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~--~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
.-.+||+++|.--||||||+-+.. ...+... .-+|+. .....+.+.|.| +++-+|||+|.
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~-EnkFn~k--HlsTlQASF~~kk~n~ed~r---------------a~L~IWDTAGQ 72 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYV-ENKFNCK--HLSTLQASFQNKKVNVEDCR---------------ADLHIWDTAGQ 72 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHH-Hhhcchh--hHHHHHHHHhhcccccccce---------------eeeeeeeccch
Confidence 345899999999999999999988 4444322 223332 234456666654 56999999999
Q ss_pred cCCCCcccccccccccchhccceEEEEEeccCCcceEEecC
Q 012870 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172 (454)
Q Consensus 132 ~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~ 172 (454)
.+....++-+ +|.+|.+++|.|..+.+++..|.|
T Consensus 73 ErfHALGPIY-------YRgSnGalLVyDITDrdSFqKVKn 106 (218)
T KOG0088|consen 73 ERFHALGPIY-------YRGSNGALLVYDITDRDSFQKVKN 106 (218)
T ss_pred HhhhccCceE-------EeCCCceEEEEeccchHHHHHHHH
Confidence 8776655443 688999999999998665433333
No 265
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.65 E-value=4.1e-08 Score=92.97 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=54.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+.|.|+|.+|||||||+++|++.. .. ..++ +..++......+... .+..+.+|||||..+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~-~~-~t~~--s~~~~~~~~~~~~~~-------------~~~~~~l~D~pG~~~--- 60 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK-YR-STVT--SIEPNVATFILNSEG-------------KGKKFRLVDVPGHPK--- 60 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CC-CccC--cEeecceEEEeecCC-------------CCceEEEEECCCCHH---
Confidence 368999999999999999999543 21 1222 223444444332100 035699999999853
Q ss_pred cccccccccccchhcc-ceEEEEEeccC
Q 012870 137 QGEGLGNKFLSHIREV-DSILQVVRCFE 163 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~a-D~il~VvD~~~ 163 (454)
+...+...++.+ +++++|+|+++
T Consensus 61 ----~~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 61 ----LRDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred ----HHHHHHHHHhccCCEEEEEEECcc
Confidence 233445567777 99999999853
No 266
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.64 E-value=1.3e-07 Score=103.20 Aligned_cols=143 Identities=19% Similarity=0.122 Sum_probs=86.6
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCC---------------CCcccccceeeeeeeCCCccchhcccccCccccCce
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~---------------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~ 122 (454)
.|+|||..++|||||+++|+......... .-+.|+......+... +.+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~-----------------~~k 65 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN-----------------GTK 65 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC-----------------CEE
Confidence 69999999999999999998422111110 1134443333333333 357
Q ss_pred eEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHhH
Q 012870 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINL 185 (454)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~~ 185 (454)
+.+|||||..+.. ......++.+|++++|||+++. .+++.+.|+.|... +...+.+
T Consensus 66 inlIDTPGh~DF~-------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ 138 (594)
T TIGR01394 66 INIVDTPGHADFG-------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVD 138 (594)
T ss_pred EEEEECCCHHHHH-------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHH
Confidence 9999999985432 2334557889999999999763 24566778888532 2222212
Q ss_pred hhhcccHHHHHHHHHHHHh-----cccCCCccccchH----------HHHHHHHHHHHhhhC
Q 012870 186 ELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKED----------AEKAALEKIQQALMD 232 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~~~-----~~~~~~vSak~~~----------~~~~ll~~i~~~L~~ 232 (454)
++ ...+..+.. ..+...+||++|. ++..|++.+.+.+|.
T Consensus 139 ei--------~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 139 EV--------FDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HH--------HHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 11 111111110 1122337888885 688999999998874
No 267
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.63 E-value=1.4e-07 Score=93.74 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQA 84 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~v 84 (454)
..++|+++|.+|+|||||+|+|.+......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~ 32 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPS 32 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence 347999999999999999999997655444
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.60 E-value=1.3e-07 Score=87.96 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=51.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
...|.|+|++|+|||+||..|+.+.... -.|..+|+.+.. +.... +..+.+||+||-.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~~-~~~~~--------------~~~~~lvD~PGH~r-- 61 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAYN-VNNSK--------------GKKLRLVDIPGHPR-- 61 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEECC-GSSTC--------------GTCECEEEETT-HC--
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceEE-eecCC--------------CCEEEEEECCCcHH--
Confidence 3579999999999999999999542211 123334444422 21111 35699999999854
Q ss_pred Ccccccccccccc---hhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSH---IREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~---ir~aD~il~VvD~~~ 163 (454)
+..+++.. +..+.+|++|||++.
T Consensus 62 -----lr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 62 -----LRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp -----CCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred -----HHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 33445554 788999999999874
No 269
>PRK12289 GTPase RsgA; Reviewed
Probab=98.59 E-value=4.2e-08 Score=100.53 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCc-------ccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
.++|+|.||||||||+|+|.+.....+++.|+ ||++..... +++ ...++||||
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l~~------------------g~~liDTPG 233 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--LPN------------------GGLLADTPG 233 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--CCC------------------CcEEEeCCC
Confidence 48999999999999999999888888888888 776653332 332 247999999
Q ss_pred ccCCC
Q 012870 131 LVKGA 135 (454)
Q Consensus 131 l~~~~ 135 (454)
+....
T Consensus 234 ~~~~~ 238 (352)
T PRK12289 234 FNQPD 238 (352)
T ss_pred ccccc
Confidence 96543
No 270
>PRK13768 GTPase; Provisional
Probab=98.58 E-value=9.5e-08 Score=93.73 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=68.4
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhc--cceEEEEEeccC---------------------CcceEEecCccCCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIRE--VDSILQVVRCFE---------------------DNDIVHVNGKVDPK 177 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~--aD~il~VvD~~~---------------------~~~v~~v~~~~dp~ 177 (454)
..+.++||||..+.... ...+..+.+++.. ++++++|+|++. +.+++.+.|+.|..
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 47999999998765432 2355566666655 899999999854 12567788888865
Q ss_pred Ch--hHHHhHhhhcccHHHH--------------HH-HHHHHHhcc---cCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 178 SD--VDVINLELVFSDLDQI--------------EK-RMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 178 ~d--i~~l~~el~l~d~~~l--------------~~-~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
.. ...+.+.+. +.+.+ .. ..+.++... +..++|++++.+++++++.+.+.|+.+.
T Consensus 176 ~~~~~~~~~~~l~--~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 176 SEEELERILKWLE--DPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred CchhHHHHHHHHh--CHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 43 222322222 21111 00 111122221 2234899999999999999999987653
No 271
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.57 E-value=9e-08 Score=90.81 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=54.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.||+++|.++||||||++++++ ........|....+.....+.+++.. ...+ ...+.+|||+|..+...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~-~~f~~~~~~Tig~~~~~k~~~~~~~~--------~~~~--~~~l~IwDtaG~e~~~~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK-NQVLGRPSWTVGCSVDVKHHTYKEGT--------PEEK--TFFVELWDVGGSESVKS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-CCCCCCCCcceeeeEEEEEEEEcCCC--------CCCc--EEEEEEEecCCchhHHH
Confidence 4899999999999999999994 33333333322222222233332110 0000 24589999999854322
Q ss_pred cccccccccccchhccceEEEEEeccCC
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
+.. ..++++|++++|+|+++.
T Consensus 70 ----l~~---~~yr~ad~iIlVyDvtn~ 90 (202)
T cd04102 70 ----TRA---VFYNQVNGIILVHDLTNR 90 (202)
T ss_pred ----HHH---HHhCcCCEEEEEEECcCh
Confidence 222 236789999999998653
No 272
>PRK13351 elongation factor G; Reviewed
Probab=98.57 E-value=4.6e-07 Score=100.91 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=63.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCcc--ccCC---------------CCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKA--QAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~--~vs~---------------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
..+|+|+|.+|+|||||+++|+..... ..+. ..+.|+......+...
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~---------------- 71 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD---------------- 71 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC----------------
Confidence 468999999999999999999842211 0110 0122333333333322
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
..++.+|||||..+.. ......++.+|++++|+|+.+. .+++.+.|+.|..
T Consensus 72 -~~~i~liDtPG~~df~-------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 -NHRINLIDTPGHIDFT-------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred -CEEEEEEECCCcHHHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence 3579999999985422 2334557889999999998763 2456677877743
No 273
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.57 E-value=3.9e-07 Score=98.23 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc--CCccccCCCCc------ccccceeeeeeeCCCccchhcccccCccccCceeEEE
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE--NGKAQAANFPF------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg--~~~~~vs~~p~------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lv 126 (454)
...+|+|+|.+|+|||||+++|+. +.....+.... ++.|... ...+|-..+..-..+-..-+.++.+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~----~E~~rgiSi~~~~~~~~~~~~~inli 84 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWME----MEKQRGISVTSSVMQFPYRDCLINLL 84 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcH----HHHhhCCceeeeeEEEEECCEEEEEE
Confidence 345899999999999999999962 22212211111 1111100 00000000000000000114679999
Q ss_pred ecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCC
Q 012870 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDP 176 (454)
Q Consensus 127 DtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp 176 (454)
||||..+.. ......++.+|++++|+|+.+. .+++.+.|+.|-
T Consensus 85 DTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 85 DTPGHEDFS-------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred ECCCchhhH-------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcc
Confidence 999985432 2344557889999999998762 345667788773
No 274
>PRK12288 GTPase RsgA; Reviewed
Probab=98.56 E-value=4.7e-08 Score=100.07 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=42.4
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCc-------ccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
.++|+|.||||||||+|+|++.....+++.+. ||+...... ++ ....++||||
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~--l~------------------~~~~liDTPG 266 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYH--FP------------------HGGDLIDSPG 266 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEE--ec------------------CCCEEEECCC
Confidence 48899999999999999999887888887775 554433333 22 1246999999
Q ss_pred ccCC
Q 012870 131 LVKG 134 (454)
Q Consensus 131 l~~~ 134 (454)
+...
T Consensus 267 ir~~ 270 (347)
T PRK12288 267 VREF 270 (347)
T ss_pred CCcc
Confidence 9543
No 275
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=4e-07 Score=83.78 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=63.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|.++|+-||||||++..|--.....+ . .|+..+...+.+. +.++.+||.-|..+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt--v--PTiGfnVE~v~yk-----------------n~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--V--PTIGFNVETVEYK-----------------NISFTVWDVGGQEK 73 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC--C--CccccceeEEEEc-----------------ceEEEEEecCCCcc
Confidence 3568999999999999999999984444433 2 3555677777776 36799999999965
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
-.+ -+....++.+++|+|||.++.
T Consensus 74 ~R~-------lW~~Y~~~t~~lIfVvDS~Dr 97 (181)
T KOG0070|consen 74 LRP-------LWKHYFQNTQGLIFVVDSSDR 97 (181)
T ss_pred ccc-------chhhhccCCcEEEEEEeCCcH
Confidence 443 344557889999999999873
No 276
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.54 E-value=3.6e-07 Score=88.10 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
+|+++|.+++|||||+++|+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999993
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.54 E-value=3.3e-07 Score=96.96 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=55.5
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccc------------------------------cCCCCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~------------------------------vs~~p~tT~~~~~~~~~~~d 103 (454)
+..+.|+++|..++|||||+.+|+...... ..-..+.|++.....+..+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~- 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence 345789999999999999999997311110 0001234444333322222
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+..+.|+||||..+ +.......+..+|++++|||+.+
T Consensus 84 ----------------~~~i~lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 84 ----------------KYYFTIIDAPGHRD-------FIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred ----------------CeEEEEEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCC
Confidence 35799999999642 33344555788999999999854
No 278
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.52 E-value=9.4e-07 Score=81.37 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc-------cCCCC--cccccceeeeeeeCCCccchhcccccCccccCceeEE
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEF 125 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~-------vs~~p--~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~l 125 (454)
...||+++|.-++||||++.+++...... ++..+ .||.-...|.+.+.+ ...+.|
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~----------------~~~v~L 72 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE----------------DTGVHL 72 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC----------------cceEEE
Confidence 35799999999999999999999433211 22222 356666666666654 256899
Q ss_pred EecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 126 VDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 126 vDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
+||||..+..-.. --..+.++.++++||++.+
T Consensus 73 fgtPGq~RF~fm~-------~~l~~ga~gaivlVDss~~ 104 (187)
T COG2229 73 FGTPGQERFKFMW-------EILSRGAVGAIVLVDSSRP 104 (187)
T ss_pred ecCCCcHHHHHHH-------HHHhCCcceEEEEEecCCC
Confidence 9999996543211 1224679999999998653
No 279
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=9.5e-07 Score=77.78 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=97.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcc-cccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFC-TIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~t-T~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..+|-.|||.-+||||.|+..+| .+.+ .++.|+| .++.-...+.+..+. .++++|||+|..+
T Consensus 10 yifkyiiigdmgvgkscllhqft-ekkf-madcphtigvefgtriievsgqk---------------iklqiwdtagqer 72 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFT-EKKF-MADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQER 72 (215)
T ss_pred heEEEEEEccccccHHHHHHHHH-HHHH-hhcCCcccceecceeEEEecCcE---------------EEEEEeecccHHH
Confidence 35788999999999999999999 4443 3455543 233344455555433 3589999999964
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
... -..+..|.|-..++|.|......
T Consensus 73 fra-------vtrsyyrgaagalmvyditrrst----------------------------------------------- 98 (215)
T KOG0097|consen 73 FRA-------VTRSYYRGAAGALMVYDITRRST----------------------------------------------- 98 (215)
T ss_pred HHH-------HHHHHhccccceeEEEEehhhhh-----------------------------------------------
Confidence 332 23445778888899999643210
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
.+.+..+|...+. +| ...--++++.|+. |+.+. ++...++.+++++++|..
T Consensus 99 ---------ynhlsswl~dar~-----lt------------npnt~i~lignka--dle~q-rdv~yeeak~faeengl~ 149 (215)
T KOG0097|consen 99 ---------YNHLSSWLTDARN-----LT------------NPNTVIFLIGNKA--DLESQ-RDVTYEEAKEFAEENGLM 149 (215)
T ss_pred ---------hhhHHHHHhhhhc-----cC------------CCceEEEEecchh--hhhhc-ccCcHHHHHHHHhhcCeE
Confidence 0111111111110 00 0233467788987 45444 466788999999999999
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
|...||+...++
T Consensus 150 fle~saktg~nv 161 (215)
T KOG0097|consen 150 FLEASAKTGQNV 161 (215)
T ss_pred EEEecccccCcH
Confidence 999999998776
No 280
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.50 E-value=1.6e-07 Score=92.97 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=56.2
Q ss_pred hhhhhccccCCcEEEEEecCCCCCcHHHHHhhc-----CCccccCCCCcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 46 RFSSASKISMSLRAGIVGLPNVGKSTLFNAVVE-----NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 46 ~~~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg-----~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
..+..+...+...|-+||.||+|||||+|++-. .+.+.+++.|+.|+.. ...+.+.+.
T Consensus 133 l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V-~~~iri~~r---------------- 195 (335)
T KOG2485|consen 133 LVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRV-SERIRISHR---------------- 195 (335)
T ss_pred HHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeee-hhheEeccC----------------
Confidence 344555566789999999999999999999852 3568899999999854 333444321
Q ss_pred ceeEEEecCCccCCCCc
Q 012870 121 ASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~ 137 (454)
..+.++||||+..+...
T Consensus 196 p~vy~iDTPGil~P~I~ 212 (335)
T KOG2485|consen 196 PPVYLIDTPGILVPSIV 212 (335)
T ss_pred CceEEecCCCcCCCCCC
Confidence 24899999999876544
No 281
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.50 E-value=2.9e-07 Score=88.61 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=54.1
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcc---------------cccceeeeeeeCCCccchhcccccCccccCce
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFC---------------TIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~t---------------T~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~ 122 (454)
.|+++|.+++|||||+.+|+...........+. |++.....+.++..... .+ +-...+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~-~~~~~~ 74 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KA-DGNEYL 74 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------cc-CCCceE
Confidence 589999999999999999984332211111111 11111111111100000 00 011357
Q ss_pred eEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
+.+|||||..+. .......++.||++++|+|+.+.
T Consensus 75 i~iiDTPG~~~f-------~~~~~~~l~~aD~~ilVvD~~~g 109 (222)
T cd01885 75 INLIDSPGHVDF-------SSEVTAALRLCDGALVVVDAVEG 109 (222)
T ss_pred EEEECCCCcccc-------HHHHHHHHHhcCeeEEEEECCCC
Confidence 899999999653 23445667899999999998763
No 282
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.7e-07 Score=83.48 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+|+.++|..+.|||.|+..+. .....-..-....++.-...+.+..++ .++++|||+|+.+.
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fi-e~kfkDdssHTiGveFgSrIinVGgK~---------------vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFI-ENKFKDDSSHTIGVEFGSRIVNVGGKT---------------VKLQIWDTAGQERF 71 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHH-HhhhcccccceeeeeecceeeeecCcE---------------EEEEEeecccHHHH
Confidence 35799999999999999999998 333332222233344455566665544 46999999999765
Q ss_pred CCcccccccccccchhccceEEEEEeccCC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
.+ -..+..|.|-..++|.|+...
T Consensus 72 RS-------VtRsYYRGAAGAlLVYD~Tsr 94 (214)
T KOG0086|consen 72 RS-------VTRSYYRGAAGALLVYDITSR 94 (214)
T ss_pred HH-------HHHHHhccccceEEEEeccch
Confidence 44 234457888888999998763
No 283
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.49 E-value=5.6e-07 Score=87.56 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeee-----------CCCccc---hhc----------
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV-----------PDPRLH---VLS---------- 110 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~-----------~d~r~~---~l~---------- 110 (454)
..++|++||..++||||++++|+|....+. ..-.+|+.|..-.+.- ++..+. .+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~-~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCcccc-CCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 457999999999999999999996542322 2335666665533211 111111 000
Q ss_pred --------------ccccCccccCceeEEEecCCccCCCCcc------cccccccccchh-ccceEEEEEeccC
Q 012870 111 --------------GLSKSQKAVPASVEFVDIAGLVKGASQG------EGLGNKFLSHIR-EVDSILQVVRCFE 163 (454)
Q Consensus 111 --------------~~~~~~~~~~~~i~lvDtpGl~~~~~~~------~~l~~~fl~~ir-~aD~il~VvD~~~ 163 (454)
+++.|. -..+.++||||+......+ ..+.+....+++ ..+++++|+|+..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~---~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~ 174 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPH---VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV 174 (240)
T ss_pred cCCCCcccCcceEEEEeCCC---CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC
Confidence 011221 1469999999997542211 122234556677 4569999999854
No 284
>PLN00023 GTP-binding protein; Provisional
Probab=98.48 E-value=2.9e-07 Score=92.85 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=57.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|..+||||||++++++ ........|....+.....+.+++.-. .+..+. ........+.||||+|..+..
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~-g~F~~~~~pTIG~d~~ik~I~~~~~~~-~~~~ik-~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVK-GSSIARPPQTIGCTVGVKHITYGSPGS-SSNSIK-GDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc-CCcccccCCceeeeEEEEEEEECCccc-cccccc-ccCCceEEEEEEECCCChhhh
Confidence 47999999999999999999994 333333333332222333344431000 000000 000012469999999986544
Q ss_pred CcccccccccccchhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. +.. ..++++|++|+|+|+++
T Consensus 98 s----L~~---~yyr~AdgiILVyDITd 118 (334)
T PLN00023 98 D----CRS---LFYSQINGVIFVHDLSQ 118 (334)
T ss_pred h----hhH---HhccCCCEEEEEEeCCC
Confidence 3 212 23678999999999854
No 285
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=1.5e-07 Score=91.83 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=41.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCc-------ccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
..++++|.||||||||+|+|.+.....+++.+. ||++...-.+ .+ -.++|||
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~-------------------~~liDtP 179 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG-------------------GLIADTP 179 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC-------------------cEEEeCC
Confidence 478999999999999999999876666555543 6665544333 21 4799999
Q ss_pred CccCC
Q 012870 130 GLVKG 134 (454)
Q Consensus 130 Gl~~~ 134 (454)
|+...
T Consensus 180 G~~~~ 184 (245)
T TIGR00157 180 GFNEF 184 (245)
T ss_pred Ccccc
Confidence 99653
No 286
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.45 E-value=1.3e-06 Score=82.48 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=95.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..+|+++|.+|||||+|...+. ..... ..|..|.-+.....+.++++ ...+.++||+|..+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~-~~~f~-~~y~ptied~y~k~~~v~~~---------------~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFL-TGRFV-EDYDPTIEDSYRKELTVDGE---------------VCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeec-ccccc-cccCCCccccceEEEEECCE---------------EEEEEEEcCCCcccCh
Confidence 4699999999999999999998 44333 33444444555556666543 3568899999954433
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. +. -..++.+|+.++|+++.+..+ ++.+ .
T Consensus 66 ~----~~---~~~~~~~~gF~lVysitd~~S-------------F~~~------------~------------------- 94 (196)
T KOG0395|consen 66 A----MR---DLYIRNGDGFLLVYSITDRSS-------------FEEA------------K------------------- 94 (196)
T ss_pred H----HH---HHhhccCcEEEEEEECCCHHH-------------HHHH------------H-------------------
Confidence 2 11 123678899999998743211 1111 1
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.+.+.|.+. .....-|++.|+||.| +... +....++.+.++...+.+++
T Consensus 95 -----~l~~~I~r~-----------------------~~~~~~PivlVGNK~D--l~~~-R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 95 -----QLREQILRV-----------------------KGRDDVPIILVGNKCD--LERE-RQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred -----HHHHHHHHh-----------------------hCcCCCCEEEEEEccc--chhc-cccCHHHHHHHHHhcCCcEE
Confidence 111111000 0113469999999984 5432 24566777777887888899
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
.+||+.-.++
T Consensus 144 E~Sak~~~~v 153 (196)
T KOG0395|consen 144 ETSAKLNYNV 153 (196)
T ss_pred EeeccCCcCH
Confidence 9999875444
No 287
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.9e-06 Score=90.60 Aligned_cols=144 Identities=20% Similarity=0.184 Sum_probs=95.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccc--------------cCCCCcccccceeeeeeeCCCccchhcccccCccccCce
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ--------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~--------------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~ 122 (454)
..++||-.--=|||||.-+|+....+. +.-.-|.|+..+...+.+.+.. +.-
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~--------------~yl 126 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQ--------------SYL 126 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCC--------------ceE
Confidence 468888888899999999997321111 1122366666666555554311 356
Q ss_pred eEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc----------------ceEEecCccC-CCChhHHHhH
Q 012870 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVD-PKSDVDVINL 185 (454)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~v~~v~~~~d-p~~di~~l~~ 185 (454)
+.+|||||-++...+ .-+.+.-||.+|+|||+++.. .++.|.|++| |-.|.+.+
T Consensus 127 LNLIDTPGHvDFs~E-------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V-- 197 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSGE-------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERV-- 197 (650)
T ss_pred EEeecCCCcccccce-------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHH--
Confidence 889999999886653 223355699999999999843 3677889988 55554443
Q ss_pred hhhcccHHHHHHHHHHHHhcccCC--CccccchHHHHHHHHHHHHhhhCC
Q 012870 186 ELVFSDLDQIEKRMEKLKKGKAKD--SQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~~~~~~~~--~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
+..+..+....... .+|||+|.++.++++.|.+..|.-
T Consensus 198 ----------~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 198 ----------ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ----------HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 33333332222111 289999999999999999998753
No 288
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.44 E-value=6.1e-07 Score=96.76 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=62.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc--CCccccCCC------CcccccceeeeeeeCCCccchhcccccCccccCceeEEE
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE--NGKAQAANF------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg--~~~~~vs~~------p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lv 126 (454)
...+|+|||.+|+|||||.++|+- +.....+.. ..++.|.... ...|-..+..-..+-..-+.++.+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~----E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEM----EKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHH----HHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 346899999999999999999862 211111111 1112111100 0000000000000000114679999
Q ss_pred ecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCC
Q 012870 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDP 176 (454)
Q Consensus 127 DtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp 176 (454)
||||... +.......++.+|++++|+|+.+. .+++.+.|+.|-
T Consensus 86 DTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 86 DTPGHED-------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred ECCChhh-------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 9999843 223345567899999999998762 346677788884
No 289
>PRK12740 elongation factor G; Reviewed
Probab=98.40 E-value=1.2e-06 Score=97.20 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=58.3
Q ss_pred EecCCCCCcHHHHHhhcCCccc--cCC---------------CCcccccceeeeeeeCCCccchhcccccCccccCceeE
Q 012870 62 VGLPNVGKSTLFNAVVENGKAQ--AAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVE 124 (454)
Q Consensus 62 vG~pNvGKSTL~NaLtg~~~~~--vs~---------------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~ 124 (454)
||.+|+|||||+++|+...... .++ ..+.|++.....+... +.++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~-----------------~~~i~ 63 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK-----------------GHKIN 63 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC-----------------CEEEE
Confidence 6899999999999996322211 111 1223333333333332 35799
Q ss_pred EEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 125 FVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 125 lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
+|||||..+ +.......++.+|++++|+|+++. .+++.+.|+.|..
T Consensus 64 liDtPG~~~-------~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 64 LIDTPGHVD-------FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA 125 (668)
T ss_pred EEECCCcHH-------HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999853 222344567889999999998763 2356677888854
No 290
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.39 E-value=1.1e-06 Score=93.23 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=89.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc--ccCCCCcccccceeeee---------------eeCCCcc-chhcccccCc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIV---------------AVPDPRL-HVLSGLSKSQ 116 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~--~vs~~p~tT~~~~~~~~---------------~~~d~r~-~~l~~~~~~~ 116 (454)
..+.||++|.-..|||||+.+|||.... ..+-.-+.|++.-.... ..++..- +..+......
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 4578999999999999999999964321 11122244443211111 0111000 0111111111
Q ss_pred cccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC--c----------------ceEEecCccCCCC
Q 012870 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED--N----------------DIVHVNGKVDPKS 178 (454)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--~----------------~v~~v~~~~dp~~ 178 (454)
.....++.|+||||.. .+....+..+..+|++++|||+.+. . +++.+.|+.|.+.
T Consensus 113 ~~~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred ccccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 1223478999999952 2444445667789999999999763 1 1344667766542
Q ss_pred hhHHHhHhhhcccHHHHHHHHHHH-HhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 179 DVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 179 di~~l~~el~l~d~~~l~~~~~~~-~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
. ..+.+. .+.+...+... ....+..++||++|.|++.|++.+.+.++.
T Consensus 186 ~-~~~~~~-----~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 186 E-AQAQDQ-----YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred H-HHHHHH-----HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 1 111110 01111111110 011223459999999999999999876653
No 291
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.39 E-value=3.4e-07 Score=94.02 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=48.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcC-----CccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEec
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~-----~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDt 128 (454)
...+.|||+|.+|+|||||+|+|-|- ..+.++. .-||.++.....+- ...+.+||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~------------------~pnv~lWDl 93 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPK------------------FPNVTLWDL 93 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-------------------TTEEEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCC------------------CCCCeEEeC
Confidence 35689999999999999999999762 2233332 23565555544321 235999999
Q ss_pred CCccCCCCccccccccccc--chhccceEEEEEe
Q 012870 129 AGLVKGASQGEGLGNKFLS--HIREVDSILQVVR 160 (454)
Q Consensus 129 pGl~~~~~~~~~l~~~fl~--~ir~aD~il~VvD 160 (454)
||+....... +.++. .+.+.|.+|+|.+
T Consensus 94 PG~gt~~f~~----~~Yl~~~~~~~yD~fiii~s 123 (376)
T PF05049_consen 94 PGIGTPNFPP----EEYLKEVKFYRYDFFIIISS 123 (376)
T ss_dssp --GGGSS--H----HHHHHHTTGGG-SEEEEEES
T ss_pred CCCCCCCCCH----HHHHHHccccccCEEEEEeC
Confidence 9995443322 23333 2567898887765
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.36 E-value=5.3e-07 Score=86.89 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=51.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..+..|+++|.||+|||||+|+|.+... .++.....|.+.+.... ..++.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~-------~~~~~~~~g~i~i~~~~--------------~~~i~~vDtPg~~- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYT-------KQNISDIKGPITVVTGK--------------KRRLTFIECPNDI- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcc-------cCccccccccEEEEecC--------------CceEEEEeCCchH-
Confidence 3456799999999999999999995311 11211222211110000 3579999999853
Q ss_pred CCCcccccccccccchhccceEEEEEeccC
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+..++.+|++++|+|++.
T Consensus 95 ---------~~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 95 ---------NAMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred ---------HHHHHHHHhcCEEEEEEecCc
Confidence 234555788999999999853
No 293
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.34 E-value=1.7e-06 Score=91.68 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=32.4
Q ss_pred CcEEEEEeccccccCCCC-C----CccHHHHHHHHhhcC-----CcEEEechhhhHHhcCC
Q 012870 258 KPIIYVANVAESDLADPG-S----NPHVNEVMNLASDLQ-----SGRVTISAQVEAELTEL 308 (454)
Q Consensus 258 kpi~~v~N~~~~d~~~~~-~----~~~~~~i~~~~~~~~-----~~~v~iSA~~E~~l~~l 308 (454)
+++++++||.|. .+.. . +...++++.++++.| .+++|+||..+.++.+.
T Consensus 146 ~~iIV~vNKmD~--~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~ 204 (447)
T PLN00043 146 KQMICCCNKMDA--TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER 204 (447)
T ss_pred CcEEEEEEcccC--CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccc
Confidence 467889999862 2100 0 123566767666555 67999999999888654
No 294
>PRK00098 GTPase RsgA; Reviewed
Probab=98.33 E-value=4.5e-07 Score=91.06 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=42.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCc-------ccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
..++++|.||||||||+|+|+|.....++..+. ||+.+....+ + ....++|||
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~------------------~~~~~~Dtp 224 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--P------------------GGGLLIDTP 224 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--C------------------CCcEEEECC
Confidence 479999999999999999999876666666654 5654433332 2 225799999
Q ss_pred CccC
Q 012870 130 GLVK 133 (454)
Q Consensus 130 Gl~~ 133 (454)
|+..
T Consensus 225 G~~~ 228 (298)
T PRK00098 225 GFSS 228 (298)
T ss_pred CcCc
Confidence 9964
No 295
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.30 E-value=5e-07 Score=82.54 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=35.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCC-------cccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p-------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
..++++|.++||||||+|+|.+.....++... +||+. ...+.++ ....++|||
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~--~~l~~l~------------------~g~~iIDTP 95 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTH--RELFPLP------------------DGGYIIDTP 95 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------S--EEEEEET------------------TSEEEECSH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCC--eeEEecC------------------CCcEEEECC
Confidence 58999999999999999999976444433221 34433 2333333 247899999
Q ss_pred CccC
Q 012870 130 GLVK 133 (454)
Q Consensus 130 Gl~~ 133 (454)
|+-.
T Consensus 96 Gf~~ 99 (161)
T PF03193_consen 96 GFRS 99 (161)
T ss_dssp HHHT
T ss_pred CCCc
Confidence 9943
No 296
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3e-06 Score=89.18 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=98.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++-|-|.|.--=|||||+-+|- +.....+..-+.|...--..+++|+ +..++|.||||-..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lR-ks~VAA~E~GGITQhIGAF~V~~p~----------------G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALR-KSSVAAGEAGGITQHIGAFTVTLPS----------------GKSITFLDTPGHAA 213 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHh-hCceehhhcCCccceeceEEEecCC----------------CCEEEEecCCcHHH
Confidence 457889999999999999999999 4445555667788665555566664 45799999999843
Q ss_pred CCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccC-CCChhHHHhHhhhcccHHHHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVD-PKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~d-p~~di~~l~~el~l~d~~~l~ 196 (454)
+... --+-..-+|.+++||-+.+ +.+++...|+.| |-.+++-+..||...++.
T Consensus 214 F~aM-------RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~--- 283 (683)
T KOG1145|consen 214 FSAM-------RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIV--- 283 (683)
T ss_pred HHHH-------HhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCcc---
Confidence 3221 0112345799999998876 235677778888 555666666665544432
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHH
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+.+-....-.++||++|+|++.|.+.+.-
T Consensus 284 --~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 284 --VEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred --HHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 122222222245999999999988876643
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.28 E-value=9.7e-07 Score=89.77 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=53.3
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCcc------------eEEecCccCCCChhHHHhHhh
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND------------IVHVNGKVDPKSDVDVINLEL 187 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~------------v~~v~~~~dp~~di~~l~~el 187 (454)
+..+.|+||+|+...... ....||++++|++....++ -+.+.||.|....-.. .+
T Consensus 148 g~d~viieT~Gv~qs~~~----------i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a-~~-- 214 (332)
T PRK09435 148 GYDVILVETVGVGQSETA----------VAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAA-RR-- 214 (332)
T ss_pred CCCEEEEECCCCccchhH----------HHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHH-HH--
Confidence 457999999999632211 2456999999986222111 1455666664421110 00
Q ss_pred hcccHHHHHHHHHHHHhc-----ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 188 VFSDLDQIEKRMEKLKKG-----KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 188 ~l~d~~~l~~~~~~~~~~-----~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
....+...+...... .+...+||+++.|+++|++.+.++++
T Consensus 215 ---~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 ---AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ---HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000111111111100 11123899999999999999999887
No 298
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.25 E-value=1.9e-06 Score=83.36 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=55.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||.++|+.++||||+.+.+.++-.+.-..+-+.|.++....+...+ ...+.+||.||.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~----------------~~~l~iwD~pGq~~~~~~ 64 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS----------------FLPLNIWDCPGQDDFMEN 64 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT----------------SCEEEEEEE-SSCSTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC----------------CcEEEEEEcCCccccccc
Confidence 6899999999999999999954444444455677777766665443 357999999999644321
Q ss_pred ccccccccccchhccceEEEEEecc
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.+..+--.-.++++++++|+|+.
T Consensus 65 --~~~~~~~~if~~v~~LIyV~D~q 87 (232)
T PF04670_consen 65 --YFNSQREEIFSNVGVLIYVFDAQ 87 (232)
T ss_dssp --THTCCHHHHHCTESEEEEEEETT
T ss_pred --cccccHHHHHhccCEEEEEEEcc
Confidence 11112222357899999999986
No 299
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.5e-06 Score=79.28 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc--cccC--CCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK--AQAA--NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~--~~vs--~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
..+.|.|+|.-|||||||+-++-..-. .... ..-.+|..-|.|.+.+.. ..+.|||.-|
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~-----------------~~l~fwdlgG 78 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN-----------------APLSFWDLGG 78 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc-----------------ceeEEEEcCC
Confidence 457899999999999999999862111 0111 122456667777777763 5699999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccCCc
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~ 165 (454)
...-.+ -+-..+..|+++++|||+.+.+
T Consensus 79 Qe~lrS-------lw~~yY~~~H~ii~viDa~~~e 106 (197)
T KOG0076|consen 79 QESLRS-------LWKKYYWLAHGIIYVIDATDRE 106 (197)
T ss_pred hHHHHH-------HHHHHHHHhceeEEeecCCCHH
Confidence 853333 2234467899999999998844
No 300
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=3.7e-06 Score=87.29 Aligned_cols=144 Identities=20% Similarity=0.187 Sum_probs=93.5
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCc--------------cccCCCCcccccceeeeeeeCCCccchhcccccCccccCcee
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGK--------------AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~--------------~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i 123 (454)
..+||-.---|||||--+|..... ......-|.|+..+...+.+.... --...+
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~------------g~~Y~l 78 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD------------GETYVL 78 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC------------CCEEEE
Confidence 566777778899999999973111 112223367777666666553211 113468
Q ss_pred EEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccC-CCChhHHHhHh
Q 012870 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVD-PKSDVDVINLE 186 (454)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~d-p~~di~~l~~e 186 (454)
.|+||||-++.+.+ .-+.+..|...++|||+++. -.++.|.|++| |..|.+.+..|
T Consensus 79 nlIDTPGHVDFsYE-------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~e 151 (603)
T COG0481 79 NLIDTPGHVDFSYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQE 151 (603)
T ss_pred EEcCCCCccceEEE-------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHH
Confidence 89999999887653 12335568888999999984 24677888888 55555444332
Q ss_pred hhcccHHHHHHHHHHHHhcccCC--CccccchHHHHHHHHHHHHhhhC
Q 012870 187 LVFSDLDQIEKRMEKLKKGKAKD--SQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 187 l~l~d~~~l~~~~~~~~~~~~~~--~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
++.+-...... -+|||+|.|++++++.|.+.+|.
T Consensus 152 ------------Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 152 ------------IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ------------HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 22222121121 28999999999999999999874
No 301
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=6.3e-06 Score=86.99 Aligned_cols=146 Identities=19% Similarity=0.104 Sum_probs=91.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
.++-|.++|.---|||||+-.+- +.....+.--+.|.+.--..++.+... ...+.|+||||-..+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR-~t~Va~~EaGGITQhIGA~~v~~~~~~--------------~~~itFiDTPGHeAF 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR-KTNVAAGEAGGITQHIGAYQVPLDVIK--------------IPGITFIDTPGHEAF 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh-cCccccccCCceeeEeeeEEEEeccCC--------------CceEEEEcCCcHHHH
Confidence 46789999999999999999998 444444555677755444444443100 246999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCCC-hhHHHhHhhhcccHHHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS-DVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~~-di~~l~~el~l~d~~~l~~ 197 (454)
.... -+-..-+|.+++|||+.+ ..+++...|+.|... +...+..|+..+.+. .
T Consensus 69 t~mR-------aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~--~- 138 (509)
T COG0532 69 TAMR-------ARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLV--P- 138 (509)
T ss_pred HHHH-------hcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCC--H-
Confidence 3210 011234899999999987 346777888888442 334444433322111 1
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHH
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
+.+.......|+||++|.|+.+|++.+.
T Consensus 139 --E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 139 --EEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred --hhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 1122222345699999999999987654
No 302
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.19 E-value=9.5e-07 Score=77.16 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=54.2
Q ss_pred EEecCCCCCcHHHHHhhcCCccccCCCC-cccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCccc
Q 012870 61 IVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (454)
Q Consensus 61 ivG~pNvGKSTL~NaLtg~~~~~vs~~p-~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~ 139 (454)
++|.+.+|||.|+-+.. ...+..+++- ...+|..-..+.+++.. .++++|||+|+.+..+
T Consensus 2 llgds~~gktcllir~k-dgafl~~~fistvgid~rnkli~~~~~k---------------vklqiwdtagqerfrs--- 62 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK-DGAFLAGNFISTVGIDFRNKLIDMDDKK---------------VKLQIWDTAGQERFRS--- 62 (192)
T ss_pred ccccCccCceEEEEEec-cCceecCceeeeeeeccccceeccCCcE---------------EEEEEeeccchHHHhh---
Confidence 68999999999988877 4444444432 23344444455555533 5699999999976655
Q ss_pred ccccccccchhccceEEEEEecc
Q 012870 140 GLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 140 ~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
-.-+..|+||+++++.|..
T Consensus 63 ----vt~ayyrda~allllydia 81 (192)
T KOG0083|consen 63 ----VTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ----hhHhhhcccceeeeeeecc
Confidence 2234578999999999974
No 303
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.15 E-value=1.8e-06 Score=86.33 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=39.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCC-------cccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p-------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
..++++|.+|||||||+|+|+|.....++..+ +||++... +..+ ....++|||
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~~------------------~~~~liDtP 221 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPLP------------------GGGLLIDTP 221 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEcC------------------CCCEEEECC
Confidence 57999999999999999999976555544433 24443322 2222 124799999
Q ss_pred CccC
Q 012870 130 GLVK 133 (454)
Q Consensus 130 Gl~~ 133 (454)
|+.+
T Consensus 222 G~~~ 225 (287)
T cd01854 222 GFRE 225 (287)
T ss_pred CCCc
Confidence 9965
No 304
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.14 E-value=2.7e-06 Score=95.22 Aligned_cols=102 Identities=23% Similarity=0.204 Sum_probs=62.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCcccc---------CCC------CcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA---------ANF------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~v---------s~~------p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
..+|+++|..++|||||+++|+....... .++ .++|++......... +. .-+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~----------~~---~~~ 85 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE----------YE---GNE 85 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe----------ec---CCc
Confidence 46899999999999999999973211100 000 223333222111000 00 113
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
.++.+|||||..+.. ......++.+|++++|+|+.+. .+.+.+.|+.|-.
T Consensus 86 ~~i~liDTPG~~~f~-------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 86 YLINLIDTPGHVDFG-------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred eEEEEEeCCCccccH-------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 679999999996532 2345667899999999998652 2345677888753
No 305
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=98.11 E-value=2.5e-06 Score=72.70 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=48.3
Q ss_pred EEeccccccCCCCCCccHHHHHHHHhhcCCcEEEechhhhHHhcC-----------------------CCHHHH------
Q 012870 263 VANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTE-----------------------LPSEER------ 313 (454)
Q Consensus 263 v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~iSA~~E~~l~~-----------------------l~~ee~------ 313 (454)
++||.| .+.+ +++++++++... +.++||+||..|..|.. |+++++
T Consensus 1 AaNK~D--~~~a--~~ni~kl~~~~~--~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I 74 (109)
T PF08438_consen 1 AANKAD--LPAA--DENIEKLKEKYP--DEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKI 74 (109)
T ss_dssp EEE-GG--G-S---HHHHHHHHHHHT--T-EEEEE-HHHHHHHHS-SSS----S----------------------TTHH
T ss_pred CCcccc--cccc--HhHHHHHHHhCC--CCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHH
Confidence 589985 4444 567777776432 46799999999998873 333332
Q ss_pred HH-HHHHcCCCCchHHHHHH-HHHhHhCCeEEecCC
Q 012870 314 VE-YLASLGVSESGLGNLIR-STYSLLGLRTYFTSG 347 (454)
Q Consensus 314 ~e-~l~~~gl~~~~l~~li~-~~~~~L~li~ffT~g 347 (454)
++ +|..+| +||++++|. ++|++|++|.||+|.
T Consensus 75 ~~~vl~~~g--~TGVq~aln~AVf~ll~~i~VyPVe 108 (109)
T PF08438_consen 75 RDNVLERYG--STGVQEALNRAVFDLLGMIVVYPVE 108 (109)
T ss_dssp HHHHTSSSS--S-SHHHHHHHHHHTTS-EEEEEEES
T ss_pred HHHHHHhcC--CchHHHHHHHHHHHhcCCeeEeccC
Confidence 22 555565 699999996 567999999999974
No 306
>PTZ00416 elongation factor 2; Provisional
Probab=98.11 E-value=3.4e-06 Score=95.86 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=56.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccc---------------cceeeeeeeCCCccchhcccccCccccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~---------------~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
...|+|+|.+++|||||.++|+...........++|+ +.....+.+... .....+..+
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-------~~~~~~~~~ 91 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD-------LEDGDDKQP 91 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc-------cccccCCCc
Confidence 3589999999999999999999543332222222222 111011111000 000011113
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
..+.|+||||..+. .......++.+|++++|+|+.+.
T Consensus 92 ~~i~liDtPG~~~f-------~~~~~~al~~~D~ailVvda~~g 128 (836)
T PTZ00416 92 FLINLIDSPGHVDF-------SSEVTAALRVTDGALVVVDCVEG 128 (836)
T ss_pred eEEEEEcCCCHHhH-------HHHHHHHHhcCCeEEEEEECCCC
Confidence 56999999999652 23345667899999999998763
No 307
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.9e-05 Score=78.66 Aligned_cols=165 Identities=20% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc--cCCCCccccc-----ceeeeeee----CCCccchhcccccCccccCcee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIE-----PNVGIVAV----PDPRLHVLSGLSKSQKAVPASV 123 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~--vs~~p~tT~~-----~~~~~~~~----~d~r~~~l~~~~~~~~~~~~~i 123 (454)
....||.||.--=|||||..||+|--... ..-.-+.|+. .....++- .+......|....+....-..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45789999999999999999999721111 0111122211 00000000 0000111232111111223578
Q ss_pred EEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHhH
Q 012870 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINL 185 (454)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~~ 185 (454)
-|+|.||-. .++.-.|+-..-.|+.++|+.+.++- .++.+.|++|.+..-..++
T Consensus 89 SfVDaPGHe-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE- 160 (415)
T COG5257 89 SFVDAPGHE-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALE- 160 (415)
T ss_pred EEeeCCchH-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHH-
Confidence 899999972 34444455445569999999988742 3566677777664332321
Q ss_pred hhhcccHHHHHHHHH-HHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 186 ELVFSDLDQIEKRME-KLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 186 el~l~d~~~l~~~~~-~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..+.+.+.+. .+....+-.|+||..+.|++.|++.|.+..+.
T Consensus 161 -----~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 161 -----NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred -----HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 1222222221 11222233569999999999999999888864
No 308
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4.4e-06 Score=85.69 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCC-------------------------------CCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------------------------------FPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~-------------------------------~p~tT~~~~~~~~~~~d 103 (454)
..+.++++|.+++|||||+-+|+ -+...+.. .-|.|++.....++.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLl-y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~- 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLL-YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD- 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhH-HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-
Confidence 45789999999999999999996 22221111 1133333222222222
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
...+.++|+||. ++ +......-+.+||+.++||||..+
T Consensus 84 ----------------k~~~tIiDaPGH-rd------FvknmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 84 ----------------KYNFTIIDAPGH-RD------FVKNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred ----------------CceEEEeeCCch-HH------HHHHhhcchhhccEEEEEEECCCC
Confidence 235999999994 22 222223445789999999999886
No 309
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.07 E-value=9.1e-06 Score=71.87 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=58.1
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
+...+|+++|.-|+||||++..|.+.+...+.+ |.-.+...+.... ...+.+||+-|...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g----------------~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDG----------------TFHLNVWDIGGQRG 74 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecC----------------cEEEEEEecCCccc
Confidence 456899999999999999999999766544432 2233444444432 24689999999843
Q ss_pred CCCcccccccccccchhccceEEEEEeccC
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+..-+-+...+.|.+++|+|..+
T Consensus 75 -------IRpyWsNYyenvd~lIyVIDS~D 97 (185)
T KOG0074|consen 75 -------IRPYWSNYYENVDGLIYVIDSTD 97 (185)
T ss_pred -------cchhhhhhhhccceEEEEEeCCc
Confidence 22234456788999999999543
No 310
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.8e-06 Score=79.18 Aligned_cols=86 Identities=27% Similarity=0.339 Sum_probs=60.7
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
.+....|-++|+.++|||+||-.|+ .+.. ..-.|..+|+.+...+++. .+.+||.||-.
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~-~gs~---~~TvtSiepn~a~~r~gs~-----------------~~~LVD~PGH~ 93 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLI-TGSH---RGTVTSIEPNEATYRLGSE-----------------NVTLVDLPGHS 93 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehh-cCCc---cCeeeeeccceeeEeecCc-----------------ceEEEeCCCcH
Confidence 3445789999999999999999998 4321 1224667899999988753 37899999985
Q ss_pred CCCCcccccccccccchhccceEEEEEeccC
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
+-.. .+.+. +.+-+.|-+|++|||+..
T Consensus 94 rlR~---kl~e~-~~~~~~akaiVFVVDSa~ 120 (238)
T KOG0090|consen 94 RLRR---KLLEY-LKHNYSAKAIVFVVDSAT 120 (238)
T ss_pred HHHH---HHHHH-ccccccceeEEEEEeccc
Confidence 4222 12222 222258999999999743
No 311
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-06 Score=77.26 Aligned_cols=142 Identities=18% Similarity=0.107 Sum_probs=89.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+|+.|||.-+|||||++.+.+ ...+.-...-....+.....+.+.++ ...+.+|||+|..+..
T Consensus 20 aiK~vivGng~VGKssmiqryC-kgifTkdykktIgvdflerqi~v~~E---------------dvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYC-KGIFTKDYKKTIGVDFLERQIKVLIE---------------DVRSMLWDTAGQEEFD 83 (246)
T ss_pred hEEEEEECCCccchHHHHHHHh-ccccccccccccchhhhhHHHHhhHH---------------HHHHHHHHhccchhHH
Confidence 4799999999999999999999 55554444444444444444444432 2457899999985432
Q ss_pred CcccccccccccchhccceEEEEEeccC-------------------CcceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~-------------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
. -..+..|.|.+.++|+...+ +.|.+.+.|++|.++|-.+-+ +.++
T Consensus 84 a-------ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~--------~evE 148 (246)
T KOG4252|consen 84 A-------ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDK--------GEVE 148 (246)
T ss_pred H-------HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcch--------HHHH
Confidence 2 22345788888888987655 345678889998877654422 2233
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
....++.+. ...+|++..-|+...+..+.+.+
T Consensus 149 ~lak~l~~R--lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 149 GLAKKLHKR--LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred HHHHHhhhh--hhhhhhhhhhhhHHHHHHHHHHH
Confidence 322222222 12367777777776665555444
No 312
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.04 E-value=3.9e-06 Score=81.66 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=28.3
Q ss_pred eeEEEecCCccCCCCcccccccccccchh--ccceEEEEEeccC---------------------CcceEEecCccCCCC
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIR--EVDSILQVVRCFE---------------------DNDIVHVNGKVDPKS 178 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir--~aD~il~VvD~~~---------------------~~~v~~v~~~~dp~~ 178 (454)
.+.++||||+++--... ..+..+.+.+. ..=++++++|+.. +-+.+.+.+|.|-+.
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 68999999997532211 12223333333 3447889999764 235677889999775
No 313
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.02 E-value=1.9e-05 Score=74.22 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=63.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..|+.|||..++|||+|+-..+ ....+..-.|... |.....+.++|.+ +..+.+|||+|..+..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t-~~~fp~~yvPTVF-dnys~~v~V~dg~--------------~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT-TNAFPEEYVPTVF-DNYSANVTVDDGK--------------PVELGLWDTAGQEDYD 67 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec-cCcCcccccCeEE-ccceEEEEecCCC--------------EEEEeeeecCCCcccc
Confidence 4799999999999999999999 6666666666555 5555666675333 3568999999997653
Q ss_pred CcccccccccccchhccceEEEEEeccCC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
. + +-+ .+.++|+++.+++..++
T Consensus 68 r----l--Rpl-sY~~tdvfl~cfsv~~p 89 (198)
T KOG0393|consen 68 R----L--RPL-SYPQTDVFLLCFSVVSP 89 (198)
T ss_pred c----c--ccc-CCCCCCEEEEEEEcCCh
Confidence 2 1 112 46789999988887663
No 314
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.97 E-value=1.5e-05 Score=90.79 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccc---------------cceeeeeeeCCCccchhcccccCcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~---------------~~~~~~~~~~d~r~~~l~~~~~~~~~~ 119 (454)
....|||+|.+++|||||.++|+...........+.|+ +.....+.+... ...+.......+.-
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT-DESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecc-cccccccccccCCC
Confidence 34589999999999999999998543332222222221 111111111100 00000000000111
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
...+.|+||||..+.. ......++.+|++++|||+.+. .+.+.+.|+.|-.
T Consensus 97 ~~~inliDtPGh~dF~-------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHH-------HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 3568999999985432 2335567889999999998864 2456677888854
No 315
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.94 E-value=3.6e-05 Score=72.99 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.9
Q ss_pred hhhccccCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 48 SSASKISMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 48 ~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.....+..+.|+++|++|+|||||++++..
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3333445678899999999999999999984
No 316
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.93 E-value=3e-05 Score=67.40 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=73.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.++++||..++||+||+|+|-|...-. .....+++.++ -.+||||..-...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----------kKTQAve~~d~-------------------~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----------KKTQAVEFNDK-------------------GDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh----------cccceeeccCc-------------------cccCCchhhhhhh
Confidence 479999999999999999999654321 11223444432 2479999743221
Q ss_pred cccccccccccchhccceEEEEEeccCCc-------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN-------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~-------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~ 203 (454)
.+-...+....++|++++|-.+.++. +++.+..+.|..+|-+ ++...+.+-. .
T Consensus 53 ---~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~d----------I~~~~~~L~e-a 118 (148)
T COG4917 53 ---RWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDAD----------ISLVKRWLRE-A 118 (148)
T ss_pred ---HHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccchHh----------HHHHHHHHHH-c
Confidence 23334455678999999998877642 2344444555432211 1111121111 1
Q ss_pred hcccCCCccccchHHHHHHHHHHH
Q 012870 204 KGKAKDSQSKLKEDAEKAALEKIQ 227 (454)
Q Consensus 204 ~~~~~~~vSak~~~~~~~ll~~i~ 227 (454)
...+...+|+.+..++.+|++.+.
T Consensus 119 Ga~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 119 GAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred CCcceEEEeccCcccHHHHHHHHH
Confidence 111112278888888888877664
No 317
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.92 E-value=1.7e-05 Score=89.01 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCc---------------ccccceeeeeeeCCCccchhcccccCccccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF---------------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~---------------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
...|+|+|.+++|||||..+|+...........+ .|++.....+.+. +. ..+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~----------~~---~~~ 86 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE----------YE---GKE 86 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE----------ec---CCc
Confidence 4579999999999999999998433221111111 2222221111110 00 014
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDP 176 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp 176 (454)
.++.|+||||..+. .......++.+|++++|||+.+. .+.+.+.|+.|-
T Consensus 87 ~~i~liDtPG~~df-------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~ 151 (731)
T PRK07560 87 YLINLIDTPGHVDF-------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDR 151 (731)
T ss_pred EEEEEEcCCCccCh-------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchh
Confidence 57999999999653 22345567889999999998763 134566788774
No 318
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.90 E-value=0.00012 Score=65.63 Aligned_cols=91 Identities=16% Similarity=0.263 Sum_probs=56.1
Q ss_pred ccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 51 ~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
++++...+|.++|.-+||||+++..|.-........+--|--|...+.+..++. ...++.|.||+|
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg--------------arE~l~lyDTaG 69 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG--------------AREQLRLYDTAG 69 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC--------------hhheEEEeeccc
Confidence 445667899999999999999999998322222222111222333333333321 235799999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEec
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~ 161 (454)
+..+.. .+-..+ +.-+|+.++|.+.
T Consensus 70 lq~~~~---eLprhy---~q~aDafVLVYs~ 94 (198)
T KOG3883|consen 70 LQGGQQ---ELPRHY---FQFADAFVLVYSP 94 (198)
T ss_pred ccCchh---hhhHhH---hccCceEEEEecC
Confidence 965521 122233 3458999999875
No 319
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.89 E-value=4.6e-05 Score=74.49 Aligned_cols=176 Identities=14% Similarity=0.200 Sum_probs=91.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC-------------------------------
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD------------------------------- 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d------------------------------- 103 (454)
.+..|.+||+.|+||||++.+|++.-.+.-.+---...||....++++-
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNL 97 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNL 97 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHH
Confidence 4567889999999999999999853222222212234455554444431
Q ss_pred --CccchhcccccCccccCceeEEEecCCccCCC---CcccccccccccchhccceEEEEEeccCC--------------
Q 012870 104 --PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA---SQGEGLGNKFLSHIREVDSILQVVRCFED-------------- 164 (454)
Q Consensus 104 --~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~---~~~~~l~~~fl~~ir~aD~il~VvD~~~~-------------- 164 (454)
.++++...... ++.-..+..++||||+++-- ..|.-+.+.+-.. -.-++++|||....
T Consensus 98 F~tk~dqv~~~ie-k~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass--~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 98 FATKFDQVIELIE-KRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASS--FPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHH-HhhcccCEEEEcCCCceEEEEecCCccchHhhHhhc--CCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 00111001100 11112468999999997421 1122222222221 23578899996552
Q ss_pred -------cceEEecCccCCCC---------hhHHHhHhhhccc---HHHHHH----HHHHHHhcccCCCccccchHHHHH
Q 012870 165 -------NDIVHVNGKVDPKS---------DVDVINLELVFSD---LDQIEK----RMEKLKKGKAKDSQSKLKEDAEKA 221 (454)
Q Consensus 165 -------~~v~~v~~~~dp~~---------di~~l~~el~l~d---~~~l~~----~~~~~~~~~~~~~vSak~~~~~~~ 221 (454)
-+.+.+.|+.|... |++....-+.... ...+.+ .++..-...+...+|+.+|.|.++
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 24577788887542 2222211111000 001111 111122222334589999999999
Q ss_pred HHHHHHHhhhCC
Q 012870 222 ALEKIQQALMDG 233 (454)
Q Consensus 222 ll~~i~~~L~~~ 233 (454)
++..+.+.+.+.
T Consensus 255 f~~av~~~vdEy 266 (366)
T KOG1532|consen 255 FFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHH
Confidence 998888777654
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.87 E-value=6.6e-05 Score=75.47 Aligned_cols=25 Identities=44% Similarity=0.621 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|+|+|.||+|||||++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999874
No 321
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.83 E-value=5.4e-05 Score=71.65 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+++|+|+|.+++|||||++++.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 322
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=1.3e-05 Score=79.81 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA 85 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs 85 (454)
..+++|.+|||||||+|+|.+.....++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~ 193 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTG 193 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhh
Confidence 6789999999999999999975444433
No 323
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=2.2e-05 Score=70.72 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=58.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
+|...+|.++|||||++-..| ...+...-.....+|.....+.+...+-+ . ..+--...+++|||+|..+..+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT-D~~F~~qFIsTVGIDFreKrvvY~s~gp~-----g-~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT-DGKFNTQFISTVGIDFREKRVVYNSSGPG-----G-GGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred HHHHhhccCCCCceEEEEEec-CCcccceeEEEeecccccceEEEeccCCC-----C-CCcceEEEEeeeccccHHHHHH
Confidence 355667999999999999999 55444332223334444444444321100 0 1111124689999999977665
Q ss_pred cccccccccccchhccceEEEEEeccCCc
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~ 165 (454)
+...| .|+|-..++++|.....
T Consensus 83 ----LTTAF---fRDAMGFlLiFDlT~eq 104 (219)
T KOG0081|consen 83 ----LTTAF---FRDAMGFLLIFDLTSEQ 104 (219)
T ss_pred ----HHHHH---HHhhccceEEEeccchH
Confidence 33344 56788889999987643
No 324
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=5.2e-05 Score=81.86 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=74.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccc--------eeeeeeeCC--Ccc-----------------
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP--------NVGIVAVPD--PRL----------------- 106 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~--------~~~~~~~~d--~r~----------------- 106 (454)
+..+||+|.|.+|+||||++||++ .+..-.+..-.||-.. ..+..-.++ +..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL-~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAML-HKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHH-HHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 456899999999999999999999 4444445544455311 111222222 100
Q ss_pred ---chhcccccCcc---ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC----------------C
Q 012870 107 ---HVLSGLSKSQK---AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------D 164 (454)
Q Consensus 107 ---~~l~~~~~~~~---~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~ 164 (454)
.-|..+|.|++ .+...+.++|.||+--+.. .....-++..+||++++|+.+-. .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~K 261 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEK 261 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccC
Confidence 11233555554 3456899999999954332 33344566788999999998643 2
Q ss_pred cceEEecCccCCCCh
Q 012870 165 NDIVHVNGKVDPKSD 179 (454)
Q Consensus 165 ~~v~~v~~~~dp~~d 179 (454)
+.+..+.|+.|..++
T Consensus 262 pniFIlnnkwDasas 276 (749)
T KOG0448|consen 262 PNIFILNNKWDASAS 276 (749)
T ss_pred CcEEEEechhhhhcc
Confidence 234555666675544
No 325
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=4.7e-05 Score=69.19 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=59.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..-|+.+.|.-|||||||++.|.....+. . ..|.+|+...+.+. +.+++-+|.-|-...
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q--h--vPTlHPTSE~l~Ig-----------------~m~ftt~DLGGH~qA 77 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ--H--VPTLHPTSEELSIG-----------------GMTFTTFDLGGHLQA 77 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc--c--CCCcCCChHHheec-----------------CceEEEEccccHHHH
Confidence 45699999999999999999998433322 2 24777887777776 356889999886432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
. ..+.+.+-.||++++.||+.+.
T Consensus 78 r-------r~wkdyf~~v~~iv~lvda~d~ 100 (193)
T KOG0077|consen 78 R-------RVWKDYFPQVDAIVYLVDAYDQ 100 (193)
T ss_pred H-------HHHHHHHhhhceeEeeeehhhH
Confidence 1 1234456789999999999763
No 326
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0006 Score=69.69 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=45.6
Q ss_pred hhhhccccCCcEEEEEecCCCCCcHHHHHhhcCCccc------cCCCCcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 47 ~~~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
.+...+.+-.+.+-++|..+.|||||+|.|.+..... ++..|-.|.......+.+.+.. +.
T Consensus 12 ~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g-------------~~ 78 (366)
T KOG2655|consen 12 HRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENG-------------VK 78 (366)
T ss_pred HHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCC-------------eE
Confidence 3444445556899999999999999999998653221 2222323333333333333211 13
Q ss_pred ceeEEEecCCccC
Q 012870 121 ASVEFVDIAGLVK 133 (454)
Q Consensus 121 ~~i~lvDtpGl~~ 133 (454)
-.+.++||||+.+
T Consensus 79 l~LtvidtPGfGD 91 (366)
T KOG2655|consen 79 LNLTVIDTPGFGD 91 (366)
T ss_pred EeeEEeccCCCcc
Confidence 4688999999954
No 327
>PTZ00099 rab6; Provisional
Probab=97.68 E-value=0.00012 Score=67.83 Aligned_cols=96 Identities=20% Similarity=0.127 Sum_probs=58.3
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChh
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDV 180 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di 180 (454)
.++.||||||..+... +.. ..++.||++++|+|+++.. +++.+.|+.|.....
T Consensus 29 v~l~iwDt~G~e~~~~----~~~---~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 29 VRLQLWDTAGQERFRS----LIP---SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 101 (176)
T ss_pred EEEEEEECCChHHhhh----ccH---HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 5799999999965443 222 2367899999999987732 234555666642111
Q ss_pred HHHhHhhhcccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 181 ~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.+ ..+.......... .....+||++|.|+.++++.+.+.+++-
T Consensus 102 ~v--------~~~e~~~~~~~~~--~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 102 KV--------TYEEGMQKAQEYN--TMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CC--------CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 00 1111111111111 1123489999999999999999988763
No 328
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=97.66 E-value=4.9e-05 Score=57.97 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=35.6
Q ss_pred eEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEee
Q 012870 341 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVA 384 (454)
Q Consensus 341 i~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~ 384 (454)
|.+|| .++..+. +++|+|+.|+|..||+++++.|+.|.|++
T Consensus 1 I~v~l-pdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng 41 (60)
T PF02824_consen 1 IRVYL-PDGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG 41 (60)
T ss_dssp EEEEE-TTSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT
T ss_pred CEEEC-CCCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC
Confidence 57888 4455544 99999999999999999999999999988
No 329
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.66 E-value=0.00032 Score=74.83 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+|||..++|||||+-+|+...... +.| +..-.+.+|- -+.|. .....++||..-..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP-----~rl~~i~IPa--------dvtPe---~vpt~ivD~ss~~~- 68 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVP-----RRLPRILIPA--------DVTPE---NVPTSIVDTSSDSD- 68 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc--ccc-----ccCCccccCC--------ccCcC---cCceEEEecccccc-
Confidence 45799999999999999999999543321 111 1111111110 00111 23478999973211
Q ss_pred CCcccccccccccchhccceEEEEEeccC-----------------------CcceEEecCccCCCChhHHHhHhhhccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~-----------------------~~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
-.......++.||+++.|..+.+ ..+++.+.|+.|-...... .+
T Consensus 69 ------~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-------s~ 135 (625)
T KOG1707|consen 69 ------DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-------SD 135 (625)
T ss_pred ------hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-------ch
Confidence 11234567899999999987766 2357888888885432111 01
Q ss_pred HHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh-hCCCCCCCC---CCCHHHHHHHHHHhhhc
Q 012870 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL-MDGKPARSV---TLNDFERDSIKQLCLLT 256 (454)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L-~~~~~~~~~---~lt~ee~e~lr~~~~lt 256 (454)
...+...+......-.-...||++..++.+++-...+.. ..-.|+++. ++++.-..++..++.+.
T Consensus 136 e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~ 204 (625)
T KOG1707|consen 136 EVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKIS 204 (625)
T ss_pred hHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhh
Confidence 111222222221111112378888888888877665544 223355542 46665555555454443
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.63 E-value=0.0011 Score=63.86 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=40.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccc-------cCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEE
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~-------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lv 126 (454)
+-.+.|.+||-++.|||||+|.|....... ..++|.||---....+.. ..+ +.-++.++
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-E~g-------------Vklkltvi 109 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-EKG-------------VKLKLTVI 109 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-ecc-------------eEEEEEEe
Confidence 345789999999999999999997422221 223444442222222211 111 13568999
Q ss_pred ecCCccCC
Q 012870 127 DIAGLVKG 134 (454)
Q Consensus 127 DtpGl~~~ 134 (454)
||||+-+.
T Consensus 110 DTPGfGDq 117 (336)
T KOG1547|consen 110 DTPGFGDQ 117 (336)
T ss_pred cCCCcccc
Confidence 99999543
No 331
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00058 Score=60.56 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|..+|...+||||++-.|.-+....+ . .|.-.+...+++. +..+.+||.-|.-+-
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~--i--pTvGFnvetVtyk-----------------N~kfNvwdvGGqd~i 74 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--I--PTVGFNVETVTYK-----------------NVKFNVWDVGGQDKI 74 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc--c--cccceeEEEEEee-----------------eeEEeeeeccCchhh
Confidence 368999999999999999999983332222 2 2334566666665 467999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
++ -+-.......++|+|+|+.+.
T Consensus 75 Rp-------lWrhYy~gtqglIFV~Dsa~~ 97 (180)
T KOG0071|consen 75 RP-------LWRHYYTGTQGLIFVVDSADR 97 (180)
T ss_pred hH-------HHHhhccCCceEEEEEeccch
Confidence 32 222335677899999998764
No 332
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.55 E-value=9.1e-05 Score=73.89 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~ 81 (454)
.++|.+||.+|+|||||+|.|.+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~ 29 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDI 29 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccc
Confidence 47899999999999999999996443
No 333
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.50 E-value=0.00023 Score=71.09 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred hhccccCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 49 ~~~~~~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.........-|+|+|.||||||||++.|.+
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333345678899999999999999988874
No 334
>PRK01889 GTPase RsgA; Reviewed
Probab=97.50 E-value=5.8e-05 Score=77.75 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=25.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANF 87 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~ 87 (454)
.-+++++|.||+|||||+|+|+|.....++..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i 226 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeE
Confidence 35899999999999999999997655544443
No 335
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.46 E-value=0.0004 Score=80.03 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccc-c--CccccCceeEEEecCCccCCCCccccccc
Q 012870 67 VGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS-K--SQKAVPASVEFVDIAGLVKGASQGEGLGN 143 (454)
Q Consensus 67 vGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~-~--~~~~~~~~i~lvDtpGl~~~~~~~~~l~~ 143 (454)
++||||+-+|.+.. ...+..-+.|.+.-...++.+. ....|.-. . ..+.....+.||||||...... +
T Consensus 472 ~~KTtLLD~iR~t~-v~~~EaGGITQ~IGa~~v~~~~--~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~----l-- 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTR-VAKKEAGGITQHIGATEIPIDV--IKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS----L-- 542 (1049)
T ss_pred cccccHHHHHhCCC-cccccCCCceeccceEEEEecc--cccccccccccccccCCcCcEEEEECCCcHHHHH----H--
Confidence 36999999999544 4444556777654443444332 11111100 0 0011112499999999643321 1
Q ss_pred ccccchhccceEEEEEeccC----------------CcceEEecCccCCC
Q 012870 144 KFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPK 177 (454)
Q Consensus 144 ~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~ 177 (454)
.....+.+|++++|+|+++ ..+++.+.|+.|..
T Consensus 543 -r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 543 -RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred -HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 1123466999999999975 23567788888854
No 336
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00035 Score=74.52 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCC-------cccccc--eeeeeeeCC---Cccch-----hcccccCccc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEP--NVGIVAVPD---PRLHV-----LSGLSKSQKA 118 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p-------~tT~~~--~~~~~~~~d---~r~~~-----l~~~~~~~~~ 118 (454)
...++++|..++|||||+-.|+ .....++..- +.+..+ ....+.++. +|-.. -...|.+.
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lL-ydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLL-YDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred ceEEEEEeccccchhhhhhHHH-HHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 3678999999999999999996 3222221100 000000 111111111 11000 01122232
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
...++++|+||.-.+.+ ..+.-+..||+.++||||+.+
T Consensus 254 -~~~~tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~ 291 (603)
T KOG0458|consen 254 -SKIVTLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTG 291 (603)
T ss_pred -ceeEEEecCCCccccch-------hhhccccccceEEEEEECCcc
Confidence 24589999999432222 223345679999999999764
No 337
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00028 Score=62.78 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=80.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+++-++|.-++||+|++=.|--..... ++| |...++..+++. +-++.+||.-|...-
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt--tkP--tigfnve~v~yK-----------------NLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT--TKP--TIGFNVETVPYK-----------------NLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc--cCC--CCCcCccccccc-----------------cccceeeEccCcccc
Confidence 35799999999999999988776233322 222 222344444443 245899999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcc---------------------eEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDND---------------------IVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~---------------------v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
++ -+.-...+.|++|+|||.++.+. +..+.|+.|-.- .....|..
T Consensus 76 rP-------yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~~t~~E~~----- 141 (182)
T KOG0072|consen 76 RP-------YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--ALTRSEVL----- 141 (182)
T ss_pred cH-------HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--hhhHHHHH-----
Confidence 33 22234568999999999887432 233445544211 01111110
Q ss_pred HHHHHHHHHHhcc-cCCCccccchHHHHHHHHHHHHhhhC
Q 012870 194 QIEKRMEKLKKGK-AKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 194 ~l~~~~~~~~~~~-~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..-.++++++.. .....||.+|+|++..++-+.+.|.+
T Consensus 142 -~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 142 -KMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred -HHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 000122222221 12337889999998888877766643
No 338
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.40 E-value=0.00034 Score=68.72 Aligned_cols=89 Identities=21% Similarity=0.142 Sum_probs=55.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc-cc-cCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-AQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~-~~-vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
..++++++|.+|||||||+|.++.... +. .+.+|+-|...+...+ +..+.++|.||+-
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v--------------------~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV--------------------GKSWYEVDLPGYG 194 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec--------------------cceEEEEecCCcc
Confidence 458999999999999999999984322 22 3337888876666554 3569999999952
Q ss_pred C-----CCCc-ccccccccccchhccceEEEEEeccC
Q 012870 133 K-----GASQ-GEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 133 ~-----~~~~-~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
. .++. ...+...++-+-++---+++++|++-
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv 231 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV 231 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC
Confidence 1 1111 11223333333233334566778764
No 339
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0008 Score=69.88 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=91.0
Q ss_pred EEEEEecCCCCCcHHHHHhhcC--CccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVEN--GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~--~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
-|+..|.---|||||+.+++|. +..+...+-++|+|.-....+.+| ..+.|+|+||..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-----------------~~~~fIDvpgh~~-- 62 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-----------------GVMGFIDVPGHPD-- 62 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-----------------CceEEeeCCCcHH--
Confidence 4677788888999999999974 334455667899887777777665 3589999999843
Q ss_pred CcccccccccccchhccceEEEEEeccCCc-----------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN-----------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~-----------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
+....+..+...|..++|||+.+.. ..+.+.++.|-..+..+ .. .+...
T Consensus 63 -----~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~-e~--------~i~~I 128 (447)
T COG3276 63 -----FISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARI-EQ--------KIKQI 128 (447)
T ss_pred -----HHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHH-HH--------HHHHH
Confidence 2333445556789999999996532 12345555554432111 00 01111
Q ss_pred HHHHH-hcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 199 MEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 199 ~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+..+. ...+-.++|+++|+++++|-+.+.+++.
T Consensus 129 l~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 129 LADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 11111 1112245899999999999999988883
No 340
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.35 E-value=0.00033 Score=68.49 Aligned_cols=24 Identities=42% Similarity=0.655 Sum_probs=20.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhh
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.....|||-|.|+||||||+++|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHH
Confidence 356799999999999999999996
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0011 Score=67.47 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc--cccCCCCcccccceeeeeeeCCCc--------------cchhc---------
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPR--------------LHVLS--------- 110 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~--~~vs~~p~tT~~~~~~~~~~~d~r--------------~~~l~--------- 110 (454)
.+-|.++|.=+.||||++|-|+++.. ..+++.|.|.. -...+.-++++ +..|.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~--Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR--FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce--eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 46799999999999999999996543 34555554332 12211111111 11111
Q ss_pred -cccc-CccccCceeEEEecCCccCCCCccccccccccc----chhccceEEEEEeccC-----------------Ccce
Q 012870 111 -GLSK-SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLS----HIREVDSILQVVRCFE-----------------DNDI 167 (454)
Q Consensus 111 -~~~~-~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~----~ir~aD~il~VvD~~~-----------------~~~v 167 (454)
.|.+ |..+ -.+|.+|||||+..+..+.-..+-.|-. .+.+||.|++++|+.. ++.+
T Consensus 136 f~csqmp~~v-Le~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 136 FMCSQLPNQV-LESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHhcCChhh-hhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 1222 2223 3579999999998776542222223322 2468999999999654 2345
Q ss_pred EEecCccCCCC
Q 012870 168 VHVNGKVDPKS 178 (454)
Q Consensus 168 ~~v~~~~dp~~ 178 (454)
-.|.|+.|.++
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 66778777664
No 342
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00054 Score=70.95 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=67.1
Q ss_pred cEEEEEecCCCCCcHHHHHhh--cCCcccc-------------CCCC------cccccceeeeeeeCCCccchhcccccC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV--ENGKAQA-------------ANFP------FCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt--g~~~~~v-------------s~~p------~tT~~~~~~~~~~~d~r~~~l~~~~~~ 115 (454)
...|||-.|-||||||--.|+ |+..... |++- +..+....-.+++.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------------- 79 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------------- 79 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC-------------
Confidence 478999999999999999886 2222111 1111 11111111122222
Q ss_pred ccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccC----
Q 012870 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVD---- 175 (454)
Q Consensus 116 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~d---- 175 (454)
+..+.+.||||-.+.+ +...+.+..+|..++|+|+.. +.++.-..|+.|
T Consensus 80 ----~~~iNLLDTPGHeDFS-------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 80 ----DCLVNLLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred ----CeEEeccCCCCccccc-------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 3568999999986543 355666778999999999876 456777778776
Q ss_pred -CCChhHHHhHhhh
Q 012870 176 -PKSDVDVINLELV 188 (454)
Q Consensus 176 -p~~di~~l~~el~ 188 (454)
|++=++.++++|.
T Consensus 149 dP~ELLdEiE~~L~ 162 (528)
T COG4108 149 DPLELLDEIEEELG 162 (528)
T ss_pred ChHHHHHHHHHHhC
Confidence 4443444444443
No 343
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.28 E-value=0.00052 Score=69.83 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=42.8
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccC---CCCc----ccccceeeeeeeCCCccchhcccccCccccCceeEE
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA---NFPF----CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEF 125 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs---~~p~----tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~l 125 (454)
.+-.+.|.++|..|.||||++|.|.+....... +... .|++.......+.+.. +..++.+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~-------------~~~~l~v 86 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDG-------------FHLNLTV 86 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCC-------------eEEEEEE
Confidence 355689999999999999999999965222110 1111 2222233333333322 2357999
Q ss_pred EecCCccCC
Q 012870 126 VDIAGLVKG 134 (454)
Q Consensus 126 vDtpGl~~~ 134 (454)
+||||+.+.
T Consensus 87 IDtpGfGD~ 95 (373)
T COG5019 87 IDTPGFGDF 95 (373)
T ss_pred eccCCcccc
Confidence 999999654
No 344
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.25 E-value=0.00024 Score=64.60 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=28.3
Q ss_pred CceeEEEecCCccCCCCccccc-ccccccchhccceEEEEEecc
Q 012870 120 PASVEFVDIAGLVKGASQGEGL-GNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l-~~~fl~~ir~aD~il~VvD~~ 162 (454)
+.+..|+||||+.++.+.-..+ ....+...-++|.++.|+|+.
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~ 129 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAK 129 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhh
Confidence 4578999999997655421111 122344556789999999974
No 345
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0025 Score=64.32 Aligned_cols=93 Identities=25% Similarity=0.325 Sum_probs=55.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCC-ccccCCCC-----cccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENG-KAQAANFP-----FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p-----~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
+.+||+|.--+|||||..+|+.-. .+.-...| +.|.|--...+.++.++ .-|.- -+-|+.+||.||
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa-------rLpq~-e~lq~tlvDCPG 79 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPA-------RLPQG-EQLQFTLVDCPG 79 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccc-------ccCcc-ccceeEEEeCCC
Confidence 789999999999999999997321 11122223 33433333333332211 00111 135789999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
-. ++.+..+....--|+.++|+|+...
T Consensus 80 Ha-------sLIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 80 HA-------SLIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred cH-------HHHHHHHhhhheeeeeeEEEehhcc
Confidence 72 2444445545557999999998753
No 346
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0029 Score=69.18 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=69.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccch----hcccccCccccCceeEEEecCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV----LSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~----l~~~~~~~~~~~~~i~lvDtpG 130 (454)
..+-|+|+|.--.|||-|+-.|. +..+..+...++|. +.|...+|-..+.. +.....-.-.+ ..+.+|||||
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir-~tNVqegeaggitq--qIgAt~fp~~ni~e~tk~~~~~~K~~~kv-Pg~lvIdtpg 549 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIR-GTNVQEGEAGGITQ--QIGATYFPAENIREKTKELKKDAKKRLKV-PGLLVIDTPG 549 (1064)
T ss_pred CCceEEEeecccccchHHHHHhh-ccccccccccceee--eccccccchHHHHHHHHHHHhhhhhhcCC-CeeEEecCCC
Confidence 35789999999999999999999 45566677777763 44444444322211 11111100111 2488999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCC
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPK 177 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~ 177 (454)
...+... ..++ ..-||++|+|||.-+ ..+++..+|++|-+
T Consensus 550 hEsFtnl----Rsrg---sslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 550 HESFTNL----RSRG---SSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred chhhhhh----hhcc---ccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 7554431 1222 235999999999876 23567777877743
No 347
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.01 E-value=0.001 Score=66.08 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhh
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+...|||-|.|+||||||+-+|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHH
Confidence 456799999999999999999996
No 348
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.97 E-value=0.0022 Score=60.09 Aligned_cols=95 Identities=22% Similarity=0.190 Sum_probs=51.4
Q ss_pred ceeEEEecCC-ccCCCCcccccccccccchhccc-eEEEEEeccCCcceEEecCccCCCChhHHHhHhhhc-----ccHH
Q 012870 121 ASVEFVDIAG-LVKGASQGEGLGNKFLSHIREVD-SILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVF-----SDLD 193 (454)
Q Consensus 121 ~~i~lvDtpG-l~~~~~~~~~l~~~fl~~ir~aD-~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l-----~d~~ 193 (454)
..+.|+-..| +.-+.+.. + .| .-++|+|+.+.++++.-.+-.=-..|+-++++ .++ .|.+
T Consensus 97 ~Dll~iEs~GNL~~~~sp~--L----------~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK-~DLa~~v~~dle 163 (202)
T COG0378 97 LDLLFIESVGNLVCPFSPD--L----------GDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINK-TDLAPYVGADLE 163 (202)
T ss_pred CCEEEEecCcceecccCcc--h----------hhceEEEEEECCCCCCCcccCCCceeEeeEEEEeh-HHhHHHhCccHH
Confidence 4688888888 54443321 2 33 67789999886654321110000123333333 111 2334
Q ss_pred HHHHHHHHHHhcccCCCccccchHHHHHHHHHHHH
Q 012870 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 194 ~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
...+...+++...+...+|+++|+|.+++++.+..
T Consensus 164 vm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 164 VMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHh
Confidence 44444444444333344899999999988876654
No 349
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0023 Score=71.19 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=55.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCC-------------------cccccceeeeeeeCCCccchhcccccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------------------FCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p-------------------~tT~~~~~~~~~~~d~r~~~l~~~~~~ 115 (454)
....|||+|.--+|||||.-+|+ -.....+. + +.|+......+.+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL-~~tG~i~k-~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~------------ 74 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERIL-FYTGIISK-IGEVHDGAATMDWMEQEQERGITITSAATTLFWKG------------ 74 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHH-HHcCCcCC-CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC------------
Confidence 44589999999999999999997 21111111 2 222222222222221
Q ss_pred ccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 116 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...|.++||||.++... ..-+.+|-+|+++.|+|+.+
T Consensus 75 ----~~~iNlIDTPGHVDFt~-------EV~rslrvlDgavvVvdave 111 (697)
T COG0480 75 ----DYRINLIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVE 111 (697)
T ss_pred ----ceEEEEeCCCCccccHH-------HHHHHHHhhcceEEEEECCC
Confidence 25799999999987654 33455788999999999876
No 350
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0021 Score=69.56 Aligned_cols=101 Identities=26% Similarity=0.368 Sum_probs=63.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCC-------CC---------cccccceeeeeeeCCCccchhcccccCccccC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------FP---------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~-------~p---------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
..||++|.-..|||+|+..|.++.....+. |+ +|++..+.-.+-..|. +++.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~---------~~KS--- 196 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS---------KGKS--- 196 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC---------cCce---
Confidence 479999999999999999998544322110 11 2222222222222221 1222
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDP 176 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp 176 (454)
.-+.++||||-+.... .....++.+|++++|+|+.++ .++..+.|++|-
T Consensus 197 ~l~nilDTPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred eeeeeecCCCcccchH-------HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHH
Confidence 3488999999976443 344557889999999999874 345667777663
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.88 E-value=0.0018 Score=68.04 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..|+++|.+||||||+...|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999997
No 352
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.83 E-value=0.00055 Score=65.59 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=61.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
+..||.+.|++|+||||+=..+..+-.+.-...|+.|+|...+.+.+-+ +-.+.+||.-|...
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG----------------nl~LnlwDcGgqe~- 65 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG----------------NLVLNLWDCGGQEE- 65 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh----------------hheeehhccCCcHH-
Confidence 3468999999999999987777644444445568888888777765543 24578999999832
Q ss_pred CCcccccccccc-----cchhccceEEEEEeccCC
Q 012870 135 ASQGEGLGNKFL-----SHIREVDSILQVVRCFED 164 (454)
Q Consensus 135 ~~~~~~l~~~fl-----~~ir~aD~il~VvD~~~~ 164 (454)
..+.++ ...++++++++|+|++.+
T Consensus 66 ------fmen~~~~q~d~iF~nV~vli~vFDves~ 94 (295)
T KOG3886|consen 66 ------FMENYLSSQEDNIFRNVQVLIYVFDVESR 94 (295)
T ss_pred ------HHHHHHhhcchhhheeheeeeeeeeccch
Confidence 122221 235789999999998653
No 353
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.79 E-value=0.0053 Score=64.24 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=60.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCc----cchhcccccCccccCceeEEEecCCcc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPR----LHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r----~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
..||||-.---|||||+.+|+.+...--++. +.....+..+|-. +.-|++. ...+.-+..|.++||||-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e-----~v~ERvMDSnDlEkERGITILaKn-Tav~~~~~~INIvDTPGHA 79 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFRERE-----EVAERVMDSNDLEKERGITILAKN-TAVNYNGTRINIVDTPGHA 79 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhcccccccc-----chhhhhcCccchhhhcCcEEEecc-ceeecCCeEEEEecCCCcC
Confidence 4799999999999999999994332111110 0111122222210 0011110 0111224679999999986
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCCc----------------ceEEecCccC
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVD 175 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~v~~v~~~~d 175 (454)
+...+-+ + -+.=+|.++++||+++.+ ..+.|.|++|
T Consensus 80 DFGGEVE----R---vl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 80 DFGGEVE----R---VLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKID 131 (603)
T ss_pred Cccchhh----h---hhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCC
Confidence 6544322 2 244589999999999853 2355778887
No 354
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.51 E-value=0.12 Score=55.36 Aligned_cols=41 Identities=17% Similarity=-0.006 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~ 99 (454)
....|.|+|-.++|||||+++|-|.. .+.++...+...+.+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e----~~~~~~aLeYty~~v 64 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE----DPKKGLALEYTYLDV 64 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC----CCCCCcccceEEEee
Confidence 34689999999999999999997532 344555555555543
No 355
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.45 E-value=0.0018 Score=59.52 Aligned_cols=41 Identities=32% Similarity=0.333 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeee
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~ 98 (454)
.|+|+|.+++|||||.+.|.+.........+.+|+.|..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE 43 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence 58999999999999999999543333344456777766554
No 356
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0033 Score=66.89 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
.++-|++||.|+.|||||+..|. +.. ...|++-..|.+++-... ...+.|...|.=
T Consensus 68 PPfIvavvGPpGtGKsTLirSlV-rr~------tk~ti~~i~GPiTvvsgK--------------~RRiTflEcp~D--- 123 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLV-RRF------TKQTIDEIRGPITVVSGK--------------TRRITFLECPSD--- 123 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHH-HHH------HHhhhhccCCceEEeecc--------------eeEEEEEeChHH---
Confidence 45678899999999999999998 321 234666666666653221 245888888732
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.+++..-.+-||++++++|+.
T Consensus 124 -------l~~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 124 -------LHQMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred -------HHHHHhHHHhhheeEEEeccc
Confidence 234455566789999999964
No 357
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.039 Score=54.96 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=68.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCC---------------ccccCCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENG---------------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~---------------~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
+.-..||-||.-+-|||||..|||+-- .++...--+.|+.+.......++
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--------------- 74 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--------------- 74 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC---------------
Confidence 445789999999999999999998410 01111122566554444333332
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc-----------------ceEEecCccCCCChhH
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-----------------DIVHVNGKVDPKSDVD 181 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~-----------------~v~~v~~~~dp~~di~ 181 (454)
...-.+|.||-.+ +....+.-..+.|..|+||.+.+.+ .++...|+.|-+.|-+
T Consensus 75 --rhyahVDcPGHaD-------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 75 --RHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred --ceEEeccCCChHH-------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHH
Confidence 4578999999743 2222333345789999999988743 2455678888887654
Q ss_pred HH
Q 012870 182 VI 183 (454)
Q Consensus 182 ~l 183 (454)
.+
T Consensus 146 ll 147 (394)
T COG0050 146 LL 147 (394)
T ss_pred HH
Confidence 43
No 358
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.0027 Score=65.76 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++++|.|||||||++..|.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 359
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.22 E-value=0.0031 Score=55.99 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=28.6
Q ss_pred EEEEecCCCCCcHHHHHhhcCCc-cccCCCCcccccceeee
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~-~~vs~~p~tT~~~~~~~ 98 (454)
|+|+|.+++|||||++.|...-. ......+.||+.|..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e 42 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE 42 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc
Confidence 68999999999999999994311 12344566777765554
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.20 E-value=0.0013 Score=62.09 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.1
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
..|++||.+||||||.+-.|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 468999999999999999987
No 361
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.01 Score=60.32 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=20.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++..-+|---=|||||+-+|+-
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~ 28 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLY 28 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhh
Confidence 457888889888899999999974
No 362
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.09 E-value=0.0013 Score=60.97 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=59.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
.+..++-++|+-+|||++++.+-+ .....-.-......+....++..+|..+ ..++|||++|+.+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv-~~nfs~~yRAtIgvdfalkVl~wdd~t~--------------vRlqLwdIagQer 87 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYV-HQNFSYHYRATIGVDFALKVLQWDDKTI--------------VRLQLWDIAGQER 87 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHH-HHHHHHHHHHHHhHHHHHHHhccChHHH--------------HHHHHhcchhhhh
Confidence 456899999999999999999887 3222222222233344444555554332 3578999999964
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
. ++..--..++|.+.++|+|++..
T Consensus 88 f-------g~mtrVyykea~~~~iVfdvt~s 111 (229)
T KOG4423|consen 88 F-------GNMTRVYYKEAHGAFIVFDVTRS 111 (229)
T ss_pred h-------cceEEEEecCCcceEEEEEcccc
Confidence 3 33444456789999999998774
No 363
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.03 E-value=0.03 Score=50.67 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=54.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.+..|||||+-.-.|+..-. .......+......+.+...+ ..+-+||.-|..+..
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~---------------IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTD---------------ISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceE---------------EEEEEEecCCcHhhh
Confidence 4899999999999999999988544321 111112222333344443322 357899999985433
Q ss_pred CcccccccccccchhccceEEEEEeccCC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
. ..--.+.++-+|++++|.+..
T Consensus 84 n-------~lPiac~dsvaIlFmFDLt~r 105 (205)
T KOG1673|consen 84 N-------MLPIACKDSVAILFMFDLTRR 105 (205)
T ss_pred c-------cCceeecCcEEEEEEEecCch
Confidence 2 222335678899999998763
No 364
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.0041 Score=64.67 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+..|+|+|.+||||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999973
No 365
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.0023 Score=66.26 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
....++++|.+||||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999973
No 366
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.0094 Score=62.70 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.|++||.+||||||+++.|.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999853
No 367
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.88 E-value=0.01 Score=53.48 Aligned_cols=20 Identities=50% Similarity=0.919 Sum_probs=18.4
Q ss_pred EEEEecCCCCCcHHHHHhhc
Q 012870 59 AGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg 78 (454)
|+++|.+++||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999974
No 368
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.88 E-value=0.0072 Score=56.59 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeee
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~ 99 (454)
+.-|.|+|.+|||||||.++|...........+.||+.|..+.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~ 47 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE 47 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC
Confidence 45688999999999999999984332233456789988776654
No 369
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.007 Score=58.88 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEEecCCCCCcHHHHHhhcCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
-|+|||.+|+|||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999744
No 370
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.73 E-value=0.0066 Score=51.76 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
.|+|.|.|+|||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999983
No 371
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.73 E-value=0.0085 Score=56.23 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~ 98 (454)
....|+|+|.+++|||||.+.|.+.........+.+|+.|..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC
Confidence 34579999999999999999999543222334456777766655
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.0067 Score=64.02 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++++|.+||||||++..|..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998873
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.65 E-value=0.0069 Score=61.54 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+..|+++|.||+||||++..|.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999974
No 374
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.62 E-value=0.0079 Score=56.12 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.|+|+|.+++|||||+|.+.|-. | |..|.+.+++
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~----------~--P~~G~i~i~g 60 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE----------T--PASGEILING 60 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc----------C--CCCceEEEcC
Confidence 479999999999999999999522 2 5566666654
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=95.57 E-value=0.011 Score=60.53 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+..|+++|.||+||||++..|.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999888776
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.53 E-value=0.01 Score=58.92 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...|+++|.||+||||+...|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578899999999999998886
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.51 E-value=0.0085 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||+++|+|.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 3457999999999999999999954
No 378
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.016 Score=52.96 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=22.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhh
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.++|+|-|+|+|||||++..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 467999999999999999999887
No 379
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.45 E-value=0.013 Score=55.68 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~ 97 (454)
...-|+|+|.++||||||+++|........-..+.||+.+..+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~ 54 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPG 54 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCC
Confidence 4467889999999999999999843322234456677655444
No 380
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.29 E-value=0.01 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.|+|+|+.|+|||||+..|.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999983
No 381
>PRK07261 topology modulation protein; Provisional
Probab=95.28 E-value=0.011 Score=54.41 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
++|+|+|.||+|||||...|.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 489999999999999999997
No 382
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.19 E-value=0.013 Score=56.60 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+-..+||.|++||||..|-++
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 445789999999999988775
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.007 Score=63.49 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++++|.+||||||+...|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999973
No 384
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.012 Score=54.93 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~ 99 (454)
+..-++|.|++|||||||+++|.... ..--....||+.|..|-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv 46 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEV 46 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCc
Confidence 34578899999999999999999444 332334568888887765
No 385
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.05 E-value=0.047 Score=61.08 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEee
Q 012870 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVA 384 (454)
Q Consensus 339 ~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~ 384 (454)
+-|-+||- ..+...+|+|||+.|+|..||||+...++.|+|.+
T Consensus 360 ~~i~vfTP---kG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng 402 (683)
T TIGR00691 360 EEIYVFTP---KGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNG 402 (683)
T ss_pred CceEEECC---CCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECC
Confidence 77888882 36789999999999999999999999999998766
No 386
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.99 E-value=0.03 Score=44.78 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=42.6
Q ss_pred EEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCcc
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (454)
+++.|.+++||||+.+.|. ..... ..+. .+.++ .+.++|+||.......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~-~~l~~-~g~~---------v~~~~-------------------d~iivD~~~~~~~~~~- 50 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLA-AALAK-RGKR---------VLLID-------------------DYVLIDTPPGLGLLVL- 50 (99)
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH-CCCe---------EEEEC-------------------CEEEEeCCCCccchhh-
Confidence 6788999999999999998 33322 1111 11111 2899999998542210
Q ss_pred cccccccccchhccceEEEEEec
Q 012870 139 EGLGNKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 139 ~~l~~~fl~~ir~aD~il~VvD~ 161 (454)
+ .......+|.++++++.
T Consensus 51 --~---~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 51 --L---CLLALLAADLVIIVTTP 68 (99)
T ss_pred --h---hhhhhhhCCEEEEecCC
Confidence 0 13345678999999875
No 387
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.96 E-value=0.017 Score=55.83 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
=-|+|+|.+|+|||||+|.|.|-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999998543
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.95 E-value=0.018 Score=52.67 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.2
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
-++++|.|++||||+.-.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999987775
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.88 E-value=0.015 Score=57.63 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...+++++|.+++||||++..|++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999999974
No 390
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.78 E-value=0.012 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+|+|.+||||||++..|..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999973
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.74 E-value=0.019 Score=44.61 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=18.2
Q ss_pred EEEEecCCCCCcHHHHHhh
Q 012870 59 AGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLt 77 (454)
|++.|.|++||||+.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 392
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.74 E-value=0.036 Score=46.05 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=41.9
Q ss_pred EEEEe-cCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 59 AGIVG-LPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 59 I~ivG-~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
|+++| +.|+||||+.-.|. ...+. ...+ ...+..+. ...+.++|+|+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la-~~~~~-~~~~-------vl~~d~d~----------------~~d~viiD~p~~~~---- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLA-AALAR-RGKR-------VLLIDLDP----------------QYDYIIIDTPPSLG---- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHH-HHHHh-CCCc-------EEEEeCCC----------------CCCEEEEeCcCCCC----
Confidence 56666 78999999988887 33222 1111 11111111 13489999999742
Q ss_pred ccccccccccchhccceEEEEEec
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~ 161 (454)
..+...+..||.++.+++.
T Consensus 53 -----~~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 53 -----LLTRNALAAADLVLIPVQP 71 (104)
T ss_pred -----HHHHHHHHHCCEEEEeccC
Confidence 2233556779999999875
No 393
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.70 E-value=0.046 Score=53.86 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=38.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
-.-|+|+|..-+|||.|+|.|.+.. .+.+++ ++.-.+.|++....+. ...-...+.++||.|+..
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~---~~~~~T~Giw~w~~~~----------~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGP---TVEPCTKGIWMWSEPL----------PDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCBSSSSESSS---CSSST-SCEEEECCE-----------TTSTCEEEEEEEEECBTT
T ss_pred EEEEEeecCCccchHHHHHHHhcccccccccC---CCCCCCcceeeeeccc----------ccccceeEEEecchhccc
Confidence 3468899999999999999999532 223332 1222234443222110 000135799999999965
No 394
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.021 Score=53.14 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
++|.|+|.|||||||+...|+
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999
No 395
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=94.58 E-value=0.13 Score=54.95 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=34.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~ 99 (454)
..++|++||.-.+||||.+..+.....++-+.-.-.|+.|+...+
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTL 351 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTL 351 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEe
Confidence 358999999999999999999985455555555566777765544
No 396
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.51 E-value=0.017 Score=52.38 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=17.1
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
||+|.|-|++|||||+++|..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999993
No 397
>PRK08118 topology modulation protein; Reviewed
Probab=94.47 E-value=0.026 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+|.|+|.|++|||||...|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 398
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.024 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999953
No 399
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.41 E-value=0.029 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999964
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.41 E-value=0.027 Score=59.61 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+..|.++|.||+||||+...|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35678899999999999998886
No 401
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.39 E-value=0.024 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999963
No 402
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.38 E-value=0.025 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..|+|||||++.|+|.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 403
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.38 E-value=0.027 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..|+|+|.+++|||||++.|.+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999984
No 404
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.049 Score=54.44 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=53.9
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHH
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDV 182 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~ 182 (454)
..+-|+|.||-- -++...|+-..-.|+.++++-+.+.= .++.+.|++|.+++-+.
T Consensus 125 RHVSfVDCPGHD-------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 125 RHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred EEEEeccCCchH-------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence 457899999962 13333344444457777777654421 13334455554433222
Q ss_pred HhHhhhcccHHHHHHHHHH-HHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 183 INLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 183 l~~el~l~d~~~l~~~~~~-~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
++. .+.+.+.+.- ....++..|+||.-..|++.+.+.+.+..|.
T Consensus 198 ~eq------~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 198 LEQ------HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHH------HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 211 2222222211 1111233458999999999999999888764
No 405
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.34 E-value=0.056 Score=53.42 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=41.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCC----CCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN----FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~----~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
+-.+.|.-||-++.|||||+..|.+ -.....+ .|.....++...+.-.. +.-++.++||.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFN-t~f~~~p~~H~~~~V~L~~~TyelqEsn---------------vrlKLtiv~tv 103 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFN-TKFESEPSTHTLPNVKLQANTYELQESN---------------VRLKLTIVDTV 103 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhc-cccCCCCCccCCCCceeecchhhhhhcC---------------eeEEEEEEeec
Confidence 4457899999999999999999983 3333222 22222222222221111 12468999999
Q ss_pred CccCCCCc
Q 012870 130 GLVKGASQ 137 (454)
Q Consensus 130 Gl~~~~~~ 137 (454)
|+.+...+
T Consensus 104 GfGDQinK 111 (406)
T KOG3859|consen 104 GFGDQINK 111 (406)
T ss_pred ccccccCc
Confidence 99654433
No 406
>PRK14530 adenylate kinase; Provisional
Probab=94.34 E-value=0.028 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.++|.|+|.|+|||||+.+.|.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 407
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.33 E-value=0.026 Score=49.38 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=18.0
Q ss_pred EEEEecCCCCCcHHHHHhh
Q 012870 59 AGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLt 77 (454)
|.++|.|++||||+...|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999998
No 408
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.33 E-value=0.027 Score=48.00 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=18.6
Q ss_pred EEEEecCCCCCcHHHHHhhc
Q 012870 59 AGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg 78 (454)
|+|.|.|+|||||+.+.|..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999983
No 409
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.31 E-value=0.03 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3348999999999999999999964
No 410
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.026 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 411
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.29 E-value=0.026 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999963
No 412
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.28 E-value=0.076 Score=59.61 Aligned_cols=41 Identities=32% Similarity=0.237 Sum_probs=35.8
Q ss_pred CCeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEE
Q 012870 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAET 382 (454)
Q Consensus 339 ~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV 382 (454)
+-|-|||- + -+...+|+|||+.|+|..||||+...|+.|+|
T Consensus 404 d~V~VfTP--k-G~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkv 444 (743)
T PRK10872 404 DRVYVFTP--K-GDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKI 444 (743)
T ss_pred CeEEEECC--C-CCeEEcCCCCcHHHHHHHHhHHHHhhceEEEE
Confidence 66888982 2 35899999999999999999999999999965
No 413
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.27 E-value=0.032 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|.|.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999964
No 414
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.25 E-value=0.03 Score=43.01 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.4
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
...|.|..++|||||+.|+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999986
No 415
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.25 E-value=0.03 Score=49.95 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3347899999999999999999964
No 416
>PRK03839 putative kinase; Provisional
Probab=94.25 E-value=0.028 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
++|.|+|.|++||||+-..|.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La 21 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLA 21 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 417
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.23 E-value=0.03 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.+-++|+|++|+|||||+++|..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 345789999999999999999983
No 418
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.23 E-value=0.028 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-|+|+|.+++|||||.++|++
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999995
No 419
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.20 E-value=0.031 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999954
No 420
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.20 E-value=0.15 Score=55.04 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=51.6
Q ss_pred ccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 51 ~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
...+.-+++-++|..|+|||.+++++.|+.... ++.+.++.....-.+.+.++ ...+.+-|.+-
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~---------------~k~LiL~ei~~ 483 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQ---------------QKYLILREIGE 483 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccc---------------cceEEEeecCc
Confidence 334456889999999999999999999876655 44333332222223333321 12355555543
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+. +.++ . ..||++++|.|.+.
T Consensus 484 ~~~~~-----l~~k---e-~~cDv~~~~YDsS~ 507 (625)
T KOG1707|consen 484 DDQDF-----LTSK---E-AACDVACLVYDSSN 507 (625)
T ss_pred ccccc-----ccCc---c-ceeeeEEEecccCC
Confidence 31111 1111 1 46999999999863
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.021 Score=63.99 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
-.|++||.+||||||++..|.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999985
No 422
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.18 E-value=0.033 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
....|+|+|.+++|||||.++|.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999994
No 423
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.032 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEecCCCCCcHHHHHhhcC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.++|+|.+|+|||||++.|+|-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999953
No 424
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.025 Score=61.01 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.|+|+|.+|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 425
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.14 E-value=0.029 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999964
No 426
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.13 E-value=0.027 Score=52.65 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEecCCCCCcHHHHHhhc
Q 012870 59 AGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg 78 (454)
|||+|.++||||||.+.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999984
No 427
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.09 E-value=0.036 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|+|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4458999999999999999999964
No 428
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.031 Score=52.72 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 429
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.08 E-value=0.014 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
--++|||+.++|||||||.+||-
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred eEEEEECCCCCCceeeeeeeccc
Confidence 47899999999999999999953
No 430
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.08 E-value=0.037 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 431
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.031 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999963
No 432
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.06 E-value=0.035 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|.+|+|||||++.|+|-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999954
No 433
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.03 E-value=0.035 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|+|.+|+|||||+++|++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999994
No 434
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.03 E-value=0.031 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999954
No 435
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.03 E-value=0.039 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|+|.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 436
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.02 E-value=0.04 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 437
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.032 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999954
No 438
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.02 E-value=0.039 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999964
No 439
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.01 E-value=0.032 Score=54.29 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+|+|||||++.|+|.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3347999999999999999999963
No 440
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.01 E-value=0.038 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999964
No 441
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.01 E-value=0.031 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
.++|+|.||||||||.++|.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 442
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.00 E-value=0.95 Score=47.61 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.6
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....-+|+||+--+|||||+.++..
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHH
Confidence 34568999999999999999999973
No 443
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.00 E-value=0.04 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999953
No 444
>PRK06217 hypothetical protein; Validated
Probab=93.97 E-value=0.035 Score=51.40 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
++|.|+|.|++|||||..+|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~ 22 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALA 22 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999998
No 445
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.97 E-value=0.042 Score=50.01 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|.|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999964
No 446
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.96 E-value=0.04 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999954
No 447
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.96 E-value=0.041 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999964
No 448
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.95 E-value=0.042 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999954
No 449
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.94 E-value=0.042 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.042 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999954
No 451
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.93 E-value=0.073 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|..|||||||+++|+|
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999995
No 452
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=0.039 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..=+|||||.+++|||||++.|+|
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999994
No 453
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.92 E-value=0.035 Score=60.22 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
..-+|||||..|+|||||++.|+|..
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34599999999999999999999654
No 454
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.043 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999954
No 455
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.88 E-value=0.035 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999953
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.88 E-value=0.042 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 457
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.87 E-value=0.035 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999964
No 458
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.86 E-value=0.036 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 459
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.84 E-value=0.045 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999963
No 460
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.84 E-value=0.044 Score=51.74 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|+|.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 447999999999999999999964
No 461
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.81 E-value=0.032 Score=66.11 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhh
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..-||||||++|||||||+++|.
T Consensus 1164 ~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1164 KPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred cCCceEEEeCCCCCCHHHHHHHHH
Confidence 455699999999999999999998
No 462
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.80 E-value=0.044 Score=52.93 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|+|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 463
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.046 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999964
No 464
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.79 E-value=0.045 Score=51.75 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|.|.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 347999999999999999999964
No 465
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.79 E-value=0.037 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999963
No 466
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.038 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 467
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.76 E-value=0.038 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|+|.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999964
No 468
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.74 E-value=0.083 Score=46.75 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=23.6
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
..+.++|||+... ......+..||.+++|++.+
T Consensus 45 yd~VIiD~p~~~~---------~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 45 YDYIIIDTGAGIS---------DNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred CCEEEEECCCCCC---------HHHHHHHHhCCeEEEEcCCC
Confidence 4589999998532 12234577899999999863
No 469
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.061 Score=56.13 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..|++||.+||||||.+..|.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999887
No 470
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.039 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|+|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999953
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.72 E-value=0.05 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999963
No 472
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.71 E-value=0.04 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999953
No 473
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.70 E-value=0.038 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 347999999999999999999953
No 474
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.039 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999963
No 475
>PRK04040 adenylate kinase; Provisional
Probab=93.69 E-value=0.047 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|+|+|.|++||||+.+.|.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~ 23 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKAL 23 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 476
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.04 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999964
No 477
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.65 E-value=0.046 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|+|.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3458999999999999999999964
No 478
>PRK10908 cell division protein FtsE; Provisional
Probab=93.65 E-value=0.049 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|.|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 479
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.05 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.63 E-value=0.049 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...|+|+|.|+|||||+.+.|.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999998
No 481
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.63 E-value=0.053 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999964
No 482
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.04 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 348999999999999999999964
No 483
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.62 E-value=0.049 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 484
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.62 E-value=0.046 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 485
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.61 E-value=0.042 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999953
No 486
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.042 Score=53.25 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.5
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-|+|||.++||||||+..|.| +.+|..|.+.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng------------l~d~t~G~i~~~g 65 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG------------LVDPTSGEILFNG 65 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc------------ccCCCcceEEecc
Confidence 699999999999999999984 3345566665543
No 487
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.60 E-value=0.16 Score=45.59 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=43.5
Q ss_pred ccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhccc
Q 012870 146 LSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA 207 (454)
Q Consensus 146 l~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~ 207 (454)
++.+.+||++++|+|++++. +++.+.|+.|.. +.+.+...+..+.+..+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~-------------~~~~~~~~~~~~~~~~~ 69 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV-------------PTWVTARWVKILSKEYP 69 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC-------------CHHHHHHHHHHHhcCCc
Confidence 56688999999999997631 233444444432 22222233333333322
Q ss_pred C--CCccccchHHHHHHHHHHHHhh
Q 012870 208 K--DSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 208 ~--~~vSak~~~~~~~ll~~i~~~L 230 (454)
. .++||+.+.+..++++.+.+.+
T Consensus 70 ~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEEeeccccccHHHHHHHHHHHH
Confidence 1 3478999999888888876654
No 488
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.60 E-value=0.053 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 489
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.051 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..++|||||++.|.|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 490
>PRK08233 hypothetical protein; Provisional
Probab=93.60 E-value=0.048 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+-|+|.|.||+|||||.+.|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36789999999999999999983
No 491
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.59 E-value=0.055 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999964
No 492
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.59 E-value=0.05 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 493
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.59 E-value=0.061 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|||..++|||||+.+++|
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999996
No 494
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.58 E-value=0.098 Score=50.88 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=22.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~ 81 (454)
.-.+||||.+|+|||||.++|.|-..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 34799999999999999999997543
No 495
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.57 E-value=0.051 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999964
No 496
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.57 E-value=0.052 Score=52.79 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 497
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.041 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3458999999999999999999963
No 498
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.55 E-value=0.053 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+++|||||++.|+|.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999954
No 499
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.043 Score=53.42 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+++|||||++.|+|.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999964
No 500
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.043 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|+|||||++.|+|.
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999964
Done!