Query 012870
Match_columns 454
No_of_seqs 436 out of 3497
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jal_A YCHF protein; nucleotid 100.0 2.8E-84 9.6E-89 660.3 25.5 360 55-421 1-362 (363)
2 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 1.4E-81 4.8E-86 647.2 29.8 366 54-422 18-391 (392)
3 2ohf_A Protein OLA1, GTP-bindi 100.0 7E-82 2.4E-86 648.5 25.2 365 53-422 19-389 (396)
4 2dby_A GTP-binding protein; GD 100.0 1.8E-80 6.2E-85 634.9 30.4 360 57-421 2-367 (368)
5 1wxq_A GTP-binding protein; st 100.0 6.8E-53 2.3E-57 435.6 22.1 334 57-419 1-393 (397)
6 4a9a_A Ribosome-interacting GT 100.0 3.1E-50 1.1E-54 411.7 2.0 291 54-418 70-373 (376)
7 3iev_A GTP-binding protein ERA 99.8 2.8E-20 9.6E-25 185.3 10.8 189 56-272 10-229 (308)
8 1wf3_A GTP-binding protein; GT 99.8 7.2E-20 2.5E-24 182.1 10.8 187 57-272 8-221 (301)
9 2qtf_A Protein HFLX, GTP-bindi 99.8 5.2E-20 1.8E-24 187.8 8.6 200 2-234 107-356 (364)
10 1lnz_A SPO0B-associated GTP-bi 99.8 1.5E-19 5.1E-24 182.9 9.3 151 56-235 158-333 (342)
11 1ega_A Protein (GTP-binding pr 99.7 2.6E-18 8.9E-23 170.7 10.5 187 57-272 9-222 (301)
12 1udx_A The GTP-binding protein 99.7 2.2E-17 7.4E-22 171.0 12.7 237 56-416 157-409 (416)
13 1xzp_A Probable tRNA modificat 99.7 2.1E-17 7.1E-22 174.3 8.9 150 52-231 239-404 (482)
14 1mky_A Probable GTP-binding pr 99.7 6.5E-17 2.2E-21 168.5 9.1 145 57-231 2-165 (439)
15 3i8s_A Ferrous iron transport 99.7 3E-16 1E-20 153.6 11.3 166 56-251 3-187 (274)
16 3iby_A Ferrous iron transport 99.7 2.1E-16 7.3E-21 153.3 10.1 143 57-229 2-164 (256)
17 3gee_A MNME, tRNA modification 99.6 1.3E-16 4.6E-21 167.9 8.7 152 50-231 227-397 (476)
18 4dhe_A Probable GTP-binding pr 99.6 2.5E-16 8.5E-21 147.3 8.8 157 55-233 28-212 (223)
19 2gj8_A MNME, tRNA modification 99.6 1.9E-16 6.4E-21 143.3 6.3 94 55-165 3-97 (172)
20 3b1v_A Ferrous iron uptake tra 99.6 9.3E-16 3.2E-20 150.3 11.0 146 56-232 3-164 (272)
21 3lxw_A GTPase IMAP family memb 99.6 1.6E-15 5.5E-20 146.1 12.4 165 55-238 20-215 (247)
22 3a1s_A Iron(II) transport prot 99.6 1E-15 3.5E-20 148.6 10.2 167 56-252 5-189 (258)
23 2hjg_A GTP-binding protein ENG 99.6 2.8E-16 9.7E-21 163.6 6.1 145 57-232 4-165 (436)
24 2g6b_A RAS-related protein RAB 99.6 1.6E-14 5.6E-19 129.6 16.2 153 55-305 9-161 (180)
25 2dyk_A GTP-binding protein; GT 99.6 1.7E-15 5.9E-20 133.3 9.4 144 57-231 2-161 (161)
26 1g16_A RAS-related protein SEC 99.6 1.4E-14 4.9E-19 128.3 14.9 150 56-305 3-152 (170)
27 2wji_A Ferrous iron transport 99.6 2E-15 6.8E-20 135.2 9.0 146 56-231 3-164 (165)
28 2xtp_A GTPase IMAP family memb 99.6 7.6E-15 2.6E-19 141.4 13.5 164 55-237 21-214 (260)
29 3cph_A RAS-related protein SEC 99.6 9.6E-15 3.3E-19 135.1 13.7 153 54-306 18-170 (213)
30 3geh_A MNME, tRNA modification 99.6 3E-16 1E-20 164.7 3.8 153 51-234 219-386 (462)
31 1z08_A RAS-related protein RAB 99.6 2.7E-14 9.1E-19 126.8 15.7 152 55-305 5-156 (170)
32 4dsu_A GTPase KRAS, isoform 2B 99.6 2.5E-14 8.7E-19 129.1 15.6 153 55-307 3-155 (189)
33 3q72_A GTP-binding protein RAD 99.6 2.3E-14 8E-19 126.9 14.7 150 56-305 2-151 (166)
34 3tw8_B RAS-related protein RAB 99.6 3.2E-14 1.1E-18 127.4 15.8 153 55-307 8-160 (181)
35 3t5g_A GTP-binding protein RHE 99.6 2.5E-14 8.7E-19 128.8 14.9 151 56-305 6-156 (181)
36 3clv_A RAB5 protein, putative; 99.6 2.4E-14 8.2E-19 130.2 14.9 164 55-305 6-191 (208)
37 2hjg_A GTP-binding protein ENG 99.6 1.9E-15 6.6E-20 157.3 8.5 153 55-232 174-349 (436)
38 3tkl_A RAS-related protein RAB 99.6 2.1E-14 7.1E-19 130.9 14.4 153 55-306 15-167 (196)
39 3pqc_A Probable GTP-binding pr 99.6 9.7E-15 3.3E-19 132.6 12.1 148 55-232 22-194 (195)
40 3cbq_A GTP-binding protein REM 99.6 3.9E-14 1.3E-18 130.8 15.2 156 53-305 20-175 (195)
41 2bcg_Y Protein YP2, GTP-bindin 99.6 8.3E-14 2.8E-18 128.6 17.3 154 55-307 7-160 (206)
42 2fu5_C RAS-related protein RAB 99.6 1.7E-14 5.8E-19 130.2 12.3 153 55-306 7-159 (183)
43 1mky_A Probable GTP-binding pr 99.6 1E-14 3.5E-19 151.9 12.3 153 55-232 179-355 (439)
44 1svi_A GTP-binding protein YSX 99.6 8.4E-15 2.9E-19 133.6 10.1 148 55-231 22-194 (195)
45 3k53_A Ferrous iron transport 99.6 1E-14 3.5E-19 142.0 11.4 167 56-252 3-188 (271)
46 2y8e_A RAB-protein 6, GH09086P 99.6 5E-14 1.7E-18 125.8 14.9 84 56-162 14-97 (179)
47 3q85_A GTP-binding protein REM 99.6 4.9E-14 1.7E-18 125.1 14.7 153 56-305 2-154 (169)
48 1vg8_A RAS-related protein RAB 99.6 9.5E-14 3.2E-18 127.8 17.1 158 54-307 6-164 (207)
49 2gf9_A RAS-related protein RAB 99.6 4.6E-14 1.6E-18 128.6 14.6 152 55-305 21-172 (189)
50 2hxs_A RAB-26, RAS-related pro 99.6 1.8E-14 6.2E-19 129.0 11.7 87 55-163 5-91 (178)
51 4dcu_A GTP-binding protein ENG 99.6 4.2E-15 1.4E-19 155.6 8.5 154 54-232 193-369 (456)
52 2lkc_A Translation initiation 99.6 2.4E-14 8.1E-19 128.3 12.2 144 54-233 6-172 (178)
53 2a5j_A RAS-related protein RAB 99.5 2.3E-14 7.9E-19 130.9 12.2 153 55-306 20-172 (191)
54 1z2a_A RAS-related protein RAB 99.5 6.4E-14 2.2E-18 123.9 14.4 85 55-162 4-88 (168)
55 2fn4_A P23, RAS-related protei 99.5 1.1E-13 3.8E-18 123.8 16.0 152 55-305 8-159 (181)
56 1wms_A RAB-9, RAB9, RAS-relate 99.5 7.2E-14 2.5E-18 125.0 14.5 86 55-163 6-91 (177)
57 3oes_A GTPase rhebl1; small GT 99.5 6.7E-14 2.3E-18 129.0 14.5 153 55-306 23-175 (201)
58 2bme_A RAB4A, RAS-related prot 99.5 4.8E-14 1.7E-18 127.3 13.3 153 55-306 9-161 (186)
59 4dcu_A GTP-binding protein ENG 99.5 3E-15 1E-19 156.7 5.9 145 56-231 23-184 (456)
60 1u8z_A RAS-related protein RAL 99.5 3.2E-14 1.1E-18 125.4 11.7 151 56-305 4-154 (168)
61 2ew1_A RAS-related protein RAB 99.5 5.6E-14 1.9E-18 130.6 13.5 85 55-162 25-109 (201)
62 1x3s_A RAS-related protein RAB 99.5 8.9E-14 3E-18 126.4 14.5 151 56-305 15-165 (195)
63 1c1y_A RAS-related protein RAP 99.5 1.4E-13 4.9E-18 121.5 15.4 83 56-162 3-85 (167)
64 1z0f_A RAB14, member RAS oncog 99.5 1E-13 3.5E-18 123.8 14.6 152 55-305 14-165 (179)
65 2a9k_A RAS-related protein RAL 99.5 8.1E-14 2.8E-18 125.4 14.0 153 55-306 17-169 (187)
66 2bov_A RAla, RAS-related prote 99.5 1.3E-13 4.3E-18 126.6 15.5 154 55-307 13-166 (206)
67 1zbd_A Rabphilin-3A; G protein 99.5 9.2E-14 3.1E-18 127.8 14.6 152 56-306 8-159 (203)
68 1z06_A RAS-related protein RAB 99.5 7E-14 2.4E-18 127.3 13.6 87 55-163 19-105 (189)
69 2nzj_A GTP-binding protein REM 99.5 6.5E-14 2.2E-18 124.8 13.2 154 56-306 4-157 (175)
70 3bc1_A RAS-related protein RAB 99.5 1.4E-13 4.6E-18 124.5 15.0 162 55-305 10-172 (195)
71 2o52_A RAS-related protein RAB 99.5 4.6E-14 1.6E-18 130.4 12.1 153 55-306 24-176 (200)
72 1kao_A RAP2A; GTP-binding prot 99.5 6.6E-14 2.3E-18 123.2 12.5 152 56-306 3-154 (167)
73 1ky3_A GTP-binding protein YPT 99.5 2.1E-13 7.2E-18 122.1 16.0 87 55-163 7-93 (182)
74 1ek0_A Protein (GTP-binding pr 99.5 7.2E-14 2.5E-18 123.6 12.8 84 56-162 3-86 (170)
75 2oil_A CATX-8, RAS-related pro 99.5 1E-13 3.5E-18 126.5 14.0 153 54-305 23-175 (193)
76 2efe_B Small GTP-binding prote 99.5 1.1E-13 3.7E-18 124.3 13.8 152 55-305 11-162 (181)
77 2hup_A RAS-related protein RAB 99.5 5.8E-14 2E-18 129.9 12.3 153 54-305 27-180 (201)
78 2fg5_A RAB-22B, RAS-related pr 99.5 2.3E-13 7.9E-18 124.5 16.0 151 55-305 22-173 (192)
79 2il1_A RAB12; G-protein, GDP, 99.5 5.1E-14 1.7E-18 129.1 11.4 86 55-163 25-110 (192)
80 3lxx_A GTPase IMAP family memb 99.5 4.3E-14 1.5E-18 134.6 11.2 159 54-232 27-214 (239)
81 3r7w_A Gtpase1, GTP-binding pr 99.5 1.6E-13 5.3E-18 136.4 15.4 90 56-163 3-92 (307)
82 3kkq_A RAS-related protein M-R 99.5 2.8E-13 9.7E-18 122.1 15.7 152 55-305 17-169 (183)
83 3qq5_A Small GTP-binding prote 99.5 1.5E-14 5E-19 150.2 8.1 149 55-233 33-197 (423)
84 2qu8_A Putative nucleolar GTP- 99.5 5.4E-14 1.9E-18 132.7 11.2 151 55-232 28-205 (228)
85 2wjg_A FEOB, ferrous iron tran 99.5 2.2E-14 7.5E-19 130.0 7.9 149 56-234 7-171 (188)
86 3cpj_B GTP-binding protein YPT 99.5 1.8E-13 6.3E-18 128.4 14.4 85 55-162 12-96 (223)
87 3dz8_A RAS-related protein RAB 99.5 3.5E-14 1.2E-18 129.7 9.1 153 54-305 21-173 (191)
88 1r2q_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 121.6 12.7 84 56-162 6-89 (170)
89 3con_A GTPase NRAS; structural 99.5 5E-13 1.7E-17 121.4 16.5 151 56-306 21-171 (190)
90 2ce2_X GTPase HRAS; signaling 99.5 5.3E-13 1.8E-17 117.0 15.9 149 57-305 4-152 (166)
91 4dkx_A RAS-related protein RAB 99.5 7.4E-14 2.5E-18 132.1 11.0 152 56-306 13-164 (216)
92 2iwr_A Centaurin gamma 1; ANK 99.5 3.4E-13 1.2E-17 121.0 13.8 77 56-162 7-83 (178)
93 2erx_A GTP-binding protein DI- 99.5 3.9E-13 1.3E-17 119.0 13.6 83 56-162 3-85 (172)
94 2f7s_A C25KG, RAS-related prot 99.5 2.2E-13 7.4E-18 126.8 12.3 164 55-306 24-187 (217)
95 2atv_A RERG, RAS-like estrogen 99.5 3.7E-13 1.3E-17 123.4 13.7 151 55-305 27-178 (196)
96 1upt_A ARL1, ADP-ribosylation 99.5 3.1E-13 1.1E-17 119.9 12.8 141 54-232 5-169 (171)
97 2yc2_C IFT27, small RAB-relate 99.5 9.4E-14 3.2E-18 127.5 9.6 161 55-308 19-182 (208)
98 3t1o_A Gliding protein MGLA; G 99.5 5E-13 1.7E-17 121.3 14.2 46 256-306 134-180 (198)
99 2q3h_A RAS homolog gene family 99.5 2.1E-13 7E-18 125.3 11.5 152 54-231 18-194 (201)
100 4djt_A GTP-binding nuclear pro 99.5 1.3E-13 4.3E-18 128.5 9.8 87 54-162 9-95 (218)
101 1mh1_A RAC1; GTP-binding, GTPa 99.5 2.4E-13 8E-18 122.4 11.1 154 56-234 5-182 (186)
102 4gzl_A RAS-related C3 botulinu 99.5 1.9E-13 6.5E-18 126.7 10.6 152 54-230 28-203 (204)
103 1z0j_A RAB-22, RAS-related pro 99.5 1.7E-13 5.9E-18 121.3 9.6 142 56-231 6-168 (170)
104 2e87_A Hypothetical protein PH 99.5 5.9E-13 2E-17 134.9 14.6 148 54-232 165-336 (357)
105 1zj6_A ADP-ribosylation factor 99.4 5.1E-13 1.8E-17 121.4 12.4 144 54-235 14-181 (187)
106 3c5c_A RAS-like protein 12; GD 99.4 3.7E-13 1.3E-17 122.9 11.4 83 55-162 20-102 (187)
107 2j0v_A RAC-like GTP-binding pr 99.4 5.4E-13 1.8E-17 123.7 12.7 154 55-233 8-181 (212)
108 1ksh_A ARF-like protein 2; sma 99.4 4.7E-13 1.6E-17 121.2 11.9 142 54-233 16-181 (186)
109 1f6b_A SAR1; gtpases, N-termin 99.4 2.3E-13 7.7E-18 125.8 9.9 138 55-230 24-197 (198)
110 2x77_A ADP-ribosylation factor 99.4 5.4E-13 1.9E-17 121.2 11.8 141 55-233 21-185 (189)
111 3reg_A RHO-like small GTPase; 99.4 6.1E-13 2.1E-17 121.6 12.1 149 55-234 22-190 (194)
112 2atx_A Small GTP binding prote 99.4 9.4E-13 3.2E-17 120.1 13.3 150 55-230 17-191 (194)
113 3q3j_B RHO-related GTP-binding 99.4 5.5E-13 1.9E-17 124.8 12.0 155 54-233 25-204 (214)
114 2gf0_A GTP-binding protein DI- 99.4 1.3E-12 4.4E-17 119.2 14.1 83 55-162 7-90 (199)
115 3l0i_B RAS-related protein RAB 99.4 6.6E-14 2.3E-18 128.9 5.0 144 55-231 32-195 (199)
116 2h17_A ADP-ribosylation factor 99.4 4E-13 1.4E-17 121.6 9.9 136 55-229 20-180 (181)
117 4bas_A ADP-ribosylation factor 99.4 9.9E-13 3.4E-17 119.9 12.6 142 55-232 16-189 (199)
118 2h57_A ADP-ribosylation factor 99.4 7.1E-13 2.4E-17 120.7 11.6 140 55-231 20-186 (190)
119 1m2o_B GTP-binding protein SAR 99.4 4.6E-13 1.6E-17 122.7 10.2 137 55-229 22-189 (190)
120 1jwy_B Dynamin A GTPase domain 99.4 1.2E-12 4E-17 129.3 13.8 105 55-162 23-178 (315)
121 3lvq_E ARF-GAP with SH3 domain 99.4 7.4E-13 2.5E-17 139.6 13.0 141 55-233 321-485 (497)
122 3bwd_D RAC-like GTP-binding pr 99.4 4.6E-13 1.6E-17 120.2 9.8 152 55-231 7-180 (182)
123 2p5s_A RAS and EF-hand domain 99.4 5.1E-13 1.8E-17 122.9 10.4 151 54-231 26-196 (199)
124 1r8s_A ADP-ribosylation factor 99.4 9.7E-13 3.3E-17 116.1 11.6 137 57-232 1-162 (164)
125 2cjw_A GTP-binding protein GEM 99.4 5.5E-13 1.9E-17 122.7 9.7 145 56-231 6-171 (192)
126 2cxx_A Probable GTP-binding pr 99.4 6.1E-13 2.1E-17 120.3 9.8 143 57-232 2-184 (190)
127 2fv8_A H6, RHO-related GTP-bin 99.4 1.3E-12 4.6E-17 121.0 12.2 151 56-232 25-200 (207)
128 1moz_A ARL1, ADP-ribosylation 99.4 6.7E-13 2.3E-17 119.5 9.5 139 55-231 17-179 (183)
129 3t5d_A Septin-7; GTP-binding p 99.4 1.2E-12 4.2E-17 127.5 12.0 155 55-232 7-204 (274)
130 1zd9_A ADP-ribosylation factor 99.4 1.2E-12 4.1E-17 119.3 10.9 141 55-232 21-185 (188)
131 3ihw_A Centg3; RAS, centaurin, 99.4 8.7E-12 3E-16 113.7 16.6 78 55-162 19-96 (184)
132 2gco_A H9, RHO-related GTP-bin 99.4 1.7E-12 5.8E-17 119.7 11.9 149 56-230 25-198 (201)
133 1fzq_A ADP-ribosylation factor 99.4 1.4E-12 4.8E-17 118.4 10.7 139 55-232 15-178 (181)
134 2j1l_A RHO-related GTP-binding 99.4 9.8E-13 3.3E-17 122.8 9.8 153 55-232 33-209 (214)
135 2b6h_A ADP-ribosylation factor 99.4 1.4E-12 4.8E-17 119.7 10.6 139 55-231 28-190 (192)
136 2g3y_A GTP-binding protein GEM 99.4 7.7E-13 2.6E-17 124.5 8.1 146 55-231 36-202 (211)
137 1m7b_A RND3/RHOE small GTP-bin 99.4 4E-12 1.4E-16 115.3 12.4 150 55-230 6-181 (184)
138 3p26_A Elongation factor 1 alp 99.4 2E-12 6.7E-17 136.3 11.0 86 54-163 31-146 (483)
139 2www_A Methylmalonic aciduria 99.3 4.2E-13 1.4E-17 135.9 5.5 165 53-232 71-279 (349)
140 1gwn_A RHO-related GTP-binding 99.3 5.7E-12 1.9E-16 117.3 12.2 150 55-230 27-202 (205)
141 3izq_1 HBS1P, elongation facto 99.3 2.4E-12 8.2E-17 139.4 10.6 85 54-162 165-279 (611)
142 2aka_B Dynamin-1; fusion prote 99.3 2.4E-12 8.1E-17 125.9 9.3 163 55-228 25-249 (299)
143 3llu_A RAS-related GTP-binding 99.3 1.2E-11 4.1E-16 113.5 13.5 148 54-230 18-195 (196)
144 3gj0_A GTP-binding nuclear pro 99.3 6.4E-13 2.2E-17 124.2 5.0 145 55-235 14-178 (221)
145 2fh5_B SR-beta, signal recogni 99.3 5E-12 1.7E-16 117.3 10.6 99 55-177 6-128 (214)
146 3dpu_A RAB family protein; roc 99.3 5E-12 1.7E-16 134.8 12.0 153 54-307 39-197 (535)
147 3o47_A ADP-ribosylation factor 99.3 4.7E-12 1.6E-16 127.0 11.0 140 55-232 164-327 (329)
148 2wkq_A NPH1-1, RAS-related C3 99.3 5.8E-12 2E-16 124.4 10.6 154 53-231 152-329 (332)
149 3th5_A RAS-related C3 botulinu 99.0 2.6E-13 8.9E-18 125.2 0.0 88 54-165 28-115 (204)
150 3zvr_A Dynamin-1; hydrolase, D 99.3 2.5E-12 8.6E-17 141.6 6.6 193 54-262 49-315 (772)
151 2j69_A Bacterial dynamin-like 99.3 1.5E-12 5E-17 143.1 4.7 107 53-163 66-212 (695)
152 2f9l_A RAB11B, member RAS onco 99.3 6.6E-11 2.3E-15 108.8 14.9 84 56-162 5-88 (199)
153 3izy_P Translation initiation 99.3 7.6E-13 2.6E-17 141.0 2.0 148 55-231 3-167 (537)
154 3def_A T7I23.11 protein; chlor 99.3 5.9E-12 2E-16 121.9 8.1 87 55-162 35-127 (262)
155 3ec1_A YQEH GTPase; atnos1, at 99.3 4.1E-12 1.4E-16 129.6 7.0 86 56-161 162-255 (369)
156 3j2k_7 ERF3, eukaryotic polype 99.3 6.2E-12 2.1E-16 131.1 8.4 87 54-164 15-131 (439)
157 3sjy_A Translation initiation 99.3 1E-11 3.5E-16 127.8 9.4 160 54-232 6-192 (403)
158 1zun_B Sulfate adenylate trans 99.2 4E-11 1.4E-15 124.6 13.3 102 55-163 23-139 (434)
159 1pui_A ENGB, probable GTP-bind 99.2 8.2E-12 2.8E-16 115.3 7.2 152 54-234 24-201 (210)
160 2zej_A Dardarin, leucine-rich 99.2 2.1E-11 7.1E-16 110.8 9.2 150 56-233 2-179 (184)
161 1wb1_A Translation elongation 99.2 2E-11 6.8E-16 128.7 10.1 144 56-231 19-188 (482)
162 1h65_A Chloroplast outer envel 99.2 1.4E-11 4.6E-16 119.8 8.2 91 55-162 38-130 (270)
163 3t34_A Dynamin-related protein 99.2 6.7E-11 2.3E-15 119.7 12.5 104 55-162 33-183 (360)
164 2c78_A Elongation factor TU-A; 99.2 3E-11 1E-15 124.4 9.7 149 55-232 10-212 (405)
165 3mca_A HBS1, elongation factor 99.2 2E-12 7E-17 139.5 0.7 86 54-163 175-290 (592)
166 1oix_A RAS-related protein RAB 99.2 1.3E-10 4.3E-15 106.6 12.4 84 56-162 29-112 (191)
167 2x2e_A Dynamin-1; nitration, h 99.2 3E-11 1E-15 122.1 8.4 28 55-82 30-57 (353)
168 2elf_A Protein translation elo 99.1 5E-11 1.7E-15 121.6 8.3 130 58-232 23-180 (370)
169 1jny_A EF-1-alpha, elongation 99.1 6.6E-11 2.2E-15 123.1 9.2 85 55-163 5-119 (435)
170 3tr5_A RF-3, peptide chain rel 99.1 4.3E-11 1.5E-15 127.5 7.8 99 55-177 12-147 (528)
171 1kk1_A EIF2gamma; initiation o 99.1 1E-10 3.5E-15 120.6 10.4 160 54-232 8-200 (410)
172 3p32_A Probable GTPase RV1496/ 99.1 6.1E-11 2.1E-15 120.1 7.6 163 54-232 77-284 (355)
173 3c5h_A Glucocorticoid receptor 99.1 1.8E-10 6.3E-15 111.0 10.5 44 54-97 17-72 (255)
174 2eki_A DRG 1, developmentally- 99.1 2.6E-11 9E-16 98.6 3.7 53 334-386 5-62 (93)
175 1d2e_A Elongation factor TU (E 99.1 9.8E-11 3.4E-15 120.3 8.9 148 56-232 3-195 (397)
176 3h2y_A GTPase family protein; 99.1 7.6E-11 2.6E-15 120.1 7.5 86 56-161 160-254 (368)
177 1puj_A YLQF, conserved hypothe 99.1 5.9E-11 2E-15 116.7 6.1 62 54-135 118-179 (282)
178 1f60_A Elongation factor EEF1A 99.1 1.2E-10 4.2E-15 121.9 9.0 83 56-162 7-119 (458)
179 2ged_A SR-beta, signal recogni 99.1 1.8E-10 6E-15 104.7 8.8 82 54-162 46-129 (193)
180 1s0u_A EIF-2-gamma, translatio 99.1 2.7E-10 9.2E-15 117.4 10.1 162 55-232 7-198 (408)
181 2qpt_A EH domain-containing pr 99.1 2.2E-10 7.6E-15 122.6 9.4 121 55-178 64-232 (550)
182 1zo1_I IF2, translation initia 99.1 2.3E-11 7.9E-16 128.6 1.0 144 55-228 3-163 (501)
183 1nrj_B SR-beta, signal recogni 99.0 2.9E-10 1E-14 105.5 7.9 81 54-162 10-93 (218)
184 2p67_A LAO/AO transport system 99.0 1.1E-10 3.8E-15 117.6 4.6 163 53-231 53-260 (341)
185 2xex_A Elongation factor G; GT 99.0 7.1E-10 2.4E-14 121.8 10.8 99 55-177 9-140 (693)
186 3cb4_D GTP-binding protein LEP 99.0 8.9E-10 3E-14 118.9 10.9 147 56-232 4-182 (599)
187 1r5b_A Eukaryotic peptide chai 99.0 3.1E-10 1.1E-14 119.1 6.9 85 55-163 42-156 (467)
188 1g7s_A Translation initiation 99.0 5.7E-10 2E-14 120.4 9.1 112 55-177 4-135 (594)
189 2ywe_A GTP-binding protein LEP 99.0 7.5E-10 2.6E-14 119.4 9.3 143 56-232 6-184 (600)
190 2h5e_A Peptide chain release f 99.0 2.5E-09 8.6E-14 113.9 12.4 99 55-177 12-147 (529)
191 3avx_A Elongation factor TS, e 99.0 1.3E-09 4.6E-14 123.8 10.5 149 55-232 295-486 (1289)
192 1yrb_A ATP(GTP)binding protein 98.9 5.7E-10 2E-14 106.8 5.0 174 56-234 14-259 (262)
193 1dar_A EF-G, elongation factor 98.9 4.1E-09 1.4E-13 115.7 11.9 99 55-177 11-142 (691)
194 2qm8_A GTPase/ATPase; G protei 98.9 1.1E-09 3.7E-14 110.2 6.6 39 53-91 52-96 (337)
195 3cnl_A YLQF, putative uncharac 98.9 1.1E-09 3.8E-14 106.4 4.8 59 57-135 100-158 (262)
196 2wsm_A Hydrogenase expression/ 98.9 3.6E-09 1.2E-13 98.5 7.6 159 54-232 28-214 (221)
197 2qag_A Septin-2, protein NEDD5 98.9 3.3E-09 1.1E-13 107.7 7.9 31 53-83 34-64 (361)
198 2rdo_7 EF-G, elongation factor 98.8 1.7E-08 6E-13 110.9 12.4 106 55-177 9-147 (704)
199 3r7w_B Gtpase2, GTP-binding pr 98.8 3.2E-08 1.1E-12 99.1 11.7 85 58-164 1-85 (331)
200 1f5n_A Interferon-induced guan 98.7 1.1E-08 3.7E-13 110.0 7.3 67 54-134 36-104 (592)
201 2dy1_A Elongation factor G; tr 98.7 4.9E-08 1.7E-12 106.7 11.4 99 55-177 8-139 (665)
202 2qnr_A Septin-2, protein NEDD5 98.6 1E-07 3.5E-12 94.2 10.0 29 55-83 17-45 (301)
203 2hf9_A Probable hydrogenase ni 98.6 8.3E-08 2.8E-12 89.4 8.1 161 54-232 36-224 (226)
204 1n0u_A EF-2, elongation factor 98.5 4.1E-08 1.4E-12 110.0 5.1 101 56-164 19-134 (842)
205 3j25_A Tetracycline resistance 98.3 8.5E-07 2.9E-11 96.5 8.9 95 57-175 3-130 (638)
206 2qag_C Septin-7; cell cycle, c 98.3 2.6E-06 8.8E-11 88.1 10.9 27 55-81 30-56 (418)
207 1tq4_A IIGP1, interferon-induc 98.2 1.8E-06 6.1E-11 89.1 8.6 156 55-238 68-259 (413)
208 3vqt_A RF-3, peptide chain rel 98.2 3.1E-06 1.1E-10 90.4 8.7 105 57-185 32-174 (548)
209 3q5d_A Atlastin-1; G protein, 98.1 1.7E-06 5.9E-11 90.0 5.3 73 55-134 66-153 (447)
210 2j37_W Signal recognition part 97.9 4.3E-06 1.5E-10 88.3 4.5 107 55-164 100-226 (504)
211 4fn5_A EF-G 1, elongation fact 97.9 5.1E-05 1.7E-09 83.4 12.9 103 57-176 14-149 (709)
212 2qag_B Septin-6, protein NEDD5 97.9 2.7E-05 9.2E-10 80.5 8.9 26 55-80 41-66 (427)
213 2v3c_C SRP54, signal recogniti 97.7 1.7E-05 5.6E-10 82.4 4.4 23 56-78 99-121 (432)
214 3sop_A Neuronal-specific septi 97.7 2.1E-05 7.2E-10 76.4 4.3 24 57-80 3-26 (270)
215 1t9h_A YLOQ, probable GTPase E 97.6 1.4E-05 4.8E-10 79.2 1.8 33 56-88 173-205 (307)
216 2rcn_A Probable GTPase ENGC; Y 97.5 3.9E-05 1.3E-09 77.6 4.0 31 57-87 216-247 (358)
217 1u0l_A Probable GTPase ENGC; p 97.3 0.00014 4.7E-09 71.6 4.5 32 57-88 170-201 (301)
218 2yv5_A YJEQ protein; hydrolase 97.3 0.00019 6.6E-09 70.6 5.6 32 57-89 166-197 (302)
219 3szr_A Interferon-induced GTP- 97.2 0.00044 1.5E-08 74.6 7.1 24 56-79 45-68 (608)
220 3hvz_A Uncharacterized protein 97.1 0.00044 1.5E-08 54.5 4.7 40 340-382 7-46 (78)
221 3dm5_A SRP54, signal recogniti 97.1 0.00028 9.7E-09 73.2 4.5 23 55-77 99-121 (443)
222 3ney_A 55 kDa erythrocyte memb 97.1 0.00013 4.4E-09 67.7 1.8 42 57-98 20-62 (197)
223 1kgd_A CASK, peripheral plasma 96.6 0.00092 3.2E-08 60.2 3.0 41 57-97 6-47 (180)
224 3kl4_A SRP54, signal recogniti 96.4 0.0016 5.4E-08 67.4 3.9 22 56-77 97-118 (433)
225 1j8m_F SRP54, signal recogniti 96.2 0.0025 8.5E-08 62.6 3.8 23 56-78 98-120 (297)
226 1ye8_A Protein THEP1, hypothet 96.1 0.0019 6.6E-08 58.5 2.3 23 57-79 1-23 (178)
227 3tau_A Guanylate kinase, GMP k 96.1 0.0028 9.5E-08 58.4 3.2 42 56-97 8-50 (208)
228 1lvg_A Guanylate kinase, GMP k 96.1 0.0014 4.7E-08 60.1 1.0 22 57-78 5-26 (198)
229 1cip_A Protein (guanine nucleo 96.1 0.0089 3E-07 60.1 7.0 37 120-163 192-228 (353)
230 2xxa_A Signal recognition part 95.9 0.0036 1.2E-07 64.8 3.5 23 55-77 99-121 (433)
231 3a00_A Guanylate kinase, GMP k 95.9 0.0022 7.4E-08 57.9 1.6 40 58-97 3-43 (186)
232 2qor_A Guanylate kinase; phosp 95.9 0.0031 1.1E-07 57.7 2.4 44 54-97 10-54 (204)
233 1s96_A Guanylate kinase, GMP k 95.8 0.0029 9.9E-08 59.3 2.1 40 55-94 15-56 (219)
234 1kag_A SKI, shikimate kinase I 95.7 0.0039 1.3E-07 54.9 2.2 24 55-78 3-26 (173)
235 1ex7_A Guanylate kinase; subst 95.6 0.004 1.4E-07 57.0 1.8 41 59-99 4-45 (186)
236 1zp6_A Hypothetical protein AT 95.6 0.0057 2E-07 54.7 2.8 23 56-78 9-31 (191)
237 3c8u_A Fructokinase; YP_612366 95.5 0.0064 2.2E-07 55.8 3.0 25 54-78 20-44 (208)
238 1zcb_A G alpha I/13; GTP-bindi 95.5 0.018 6.2E-07 58.0 6.6 37 120-163 200-236 (362)
239 3lnc_A Guanylate kinase, GMP k 95.5 0.0051 1.7E-07 57.3 2.3 25 56-80 27-52 (231)
240 1u0l_A Probable GTPase ENGC; p 95.4 0.0081 2.8E-07 58.8 3.7 78 257-339 115-194 (301)
241 4ido_A Atlastin-1; GTPase, GTP 95.3 0.017 6E-07 59.9 5.9 23 55-77 66-88 (457)
242 1znw_A Guanylate kinase, GMP k 95.3 0.0057 1.9E-07 56.1 2.0 25 55-79 19-43 (207)
243 3tr0_A Guanylate kinase, GMP k 95.2 0.0077 2.6E-07 54.4 2.6 24 56-79 7-30 (205)
244 2j41_A Guanylate kinase; GMP, 95.1 0.012 4.1E-07 53.2 3.5 24 56-79 6-29 (207)
245 1cke_A CK, MSSA, protein (cyti 95.1 0.0092 3.2E-07 54.9 2.7 23 56-78 5-27 (227)
246 1z6g_A Guanylate kinase; struc 95.0 0.0084 2.9E-07 55.7 2.0 24 56-79 23-46 (218)
247 3asz_A Uridine kinase; cytidin 94.9 0.01 3.6E-07 54.0 2.6 24 56-79 6-29 (211)
248 2bbw_A Adenylate kinase 4, AK4 94.9 0.011 3.7E-07 55.6 2.6 22 56-77 27-48 (246)
249 1ly1_A Polynucleotide kinase; 94.9 0.011 3.9E-07 51.9 2.6 23 56-78 2-24 (181)
250 3tif_A Uncharacterized ABC tra 94.8 0.0098 3.3E-07 56.2 2.0 24 56-79 31-54 (235)
251 2pcj_A ABC transporter, lipopr 94.8 0.01 3.4E-07 55.6 2.1 23 57-79 31-53 (224)
252 1jjv_A Dephospho-COA kinase; P 94.8 0.012 4.1E-07 53.5 2.6 22 57-78 3-24 (206)
253 2bdt_A BH3686; alpha-beta prot 94.8 0.011 3.7E-07 53.1 2.1 22 57-78 3-24 (189)
254 3b85_A Phosphate starvation-in 94.7 0.015 5E-07 54.0 2.9 23 57-79 23-45 (208)
255 1np6_A Molybdopterin-guanine d 94.7 0.014 4.7E-07 52.7 2.6 24 55-78 5-28 (174)
256 2if2_A Dephospho-COA kinase; a 94.7 0.013 4.6E-07 53.0 2.5 22 57-78 2-23 (204)
257 2v9p_A Replication protein E1; 94.6 0.012 4.3E-07 57.9 2.3 25 54-78 124-148 (305)
258 4gp7_A Metallophosphoesterase; 94.6 0.012 4.1E-07 52.3 2.0 22 56-77 9-30 (171)
259 2f1r_A Molybdopterin-guanine d 94.6 0.0073 2.5E-07 54.4 0.4 22 57-78 3-24 (171)
260 2onk_A Molybdate/tungstate ABC 94.5 0.013 4.3E-07 55.7 2.1 23 57-79 25-47 (240)
261 4eun_A Thermoresistant glucoki 94.5 0.015 5.1E-07 52.9 2.5 23 56-78 29-51 (200)
262 2yv5_A YJEQ protein; hydrolase 94.5 0.015 5.1E-07 57.0 2.6 79 256-339 109-189 (302)
263 1g6h_A High-affinity branched- 94.5 0.013 4.5E-07 56.0 2.0 24 56-79 33-56 (257)
264 3uie_A Adenylyl-sulfate kinase 94.5 0.018 6.2E-07 52.3 2.9 25 54-78 23-47 (200)
265 2cbz_A Multidrug resistance-as 94.4 0.014 4.9E-07 55.1 2.3 24 56-79 31-54 (237)
266 3lw7_A Adenylate kinase relate 94.4 0.015 5.2E-07 50.4 2.3 20 57-76 2-21 (179)
267 1sgw_A Putative ABC transporte 94.4 0.014 4.7E-07 54.5 2.0 23 57-79 36-58 (214)
268 3gfo_A Cobalt import ATP-bindi 94.4 0.014 4.6E-07 56.7 2.0 24 56-79 34-57 (275)
269 3t61_A Gluconokinase; PSI-biol 94.4 0.016 5.5E-07 52.5 2.4 24 55-78 17-40 (202)
270 1b0u_A Histidine permease; ABC 94.4 0.014 4.7E-07 56.1 2.0 24 56-79 32-55 (262)
271 4g1u_C Hemin import ATP-bindin 94.4 0.013 4.6E-07 56.4 2.0 24 56-79 37-60 (266)
272 2ff7_A Alpha-hemolysin translo 94.4 0.015 5.3E-07 55.2 2.3 24 56-79 35-58 (247)
273 1mv5_A LMRA, multidrug resista 94.3 0.021 7.2E-07 54.0 3.1 24 56-79 28-51 (243)
274 2d2e_A SUFC protein; ABC-ATPas 94.3 0.015 5.3E-07 55.3 2.2 23 56-78 29-51 (250)
275 2pze_A Cystic fibrosis transme 94.3 0.017 5.7E-07 54.3 2.3 24 56-79 34-57 (229)
276 1knq_A Gluconate kinase; ALFA/ 94.3 0.019 6.5E-07 50.6 2.5 22 57-78 9-30 (175)
277 1ji0_A ABC transporter; ATP bi 94.3 0.016 5.3E-07 54.9 2.0 24 56-79 32-55 (240)
278 2xtz_A Guanine nucleotide-bind 94.2 0.057 1.9E-06 54.2 6.2 35 121-162 183-217 (354)
279 3kb2_A SPBC2 prophage-derived 94.2 0.019 6.5E-07 50.0 2.4 21 57-77 2-22 (173)
280 2olj_A Amino acid ABC transpor 94.2 0.016 5.5E-07 55.8 2.0 24 56-79 50-73 (263)
281 2qt1_A Nicotinamide riboside k 94.2 0.022 7.6E-07 51.8 2.9 24 55-78 20-43 (207)
282 1vpl_A ABC transporter, ATP-bi 94.2 0.016 5.6E-07 55.5 2.0 24 56-79 41-64 (256)
283 2qi9_C Vitamin B12 import ATP- 94.2 0.017 5.7E-07 55.2 2.0 23 57-79 27-49 (249)
284 2zu0_C Probable ATP-dependent 94.1 0.017 5.9E-07 55.5 2.1 23 56-78 46-68 (267)
285 2rhm_A Putative kinase; P-loop 94.1 0.023 7.8E-07 50.6 2.8 23 55-77 4-26 (193)
286 1htw_A HI0065; nucleotide-bind 94.1 0.024 8.3E-07 50.2 3.0 25 55-79 32-56 (158)
287 2i3b_A HCR-ntpase, human cance 94.1 0.016 5.5E-07 52.9 1.8 22 58-79 3-24 (189)
288 2ghi_A Transport protein; mult 94.1 0.018 6.2E-07 55.2 2.3 24 55-78 45-68 (260)
289 1qhx_A CPT, protein (chloramph 94.1 0.022 7.6E-07 50.2 2.6 22 56-77 3-24 (178)
290 3ohm_A Guanine nucleotide-bind 94.1 0.074 2.5E-06 52.8 6.6 35 121-162 167-201 (327)
291 3cm0_A Adenylate kinase; ATP-b 94.1 0.02 6.7E-07 50.9 2.2 22 56-77 4-25 (186)
292 4a74_A DNA repair and recombin 94.0 0.019 6.6E-07 52.5 2.1 22 57-78 26-47 (231)
293 2ihy_A ABC transporter, ATP-bi 94.0 0.02 6.7E-07 55.6 2.3 24 56-79 47-70 (279)
294 2jaq_A Deoxyguanosine kinase; 94.0 0.021 7.3E-07 51.2 2.4 22 57-78 1-22 (205)
295 2ixe_A Antigen peptide transpo 94.0 0.02 6.8E-07 55.3 2.3 25 55-79 44-68 (271)
296 2nq2_C Hypothetical ABC transp 94.0 0.019 6.4E-07 54.9 2.0 24 56-79 31-54 (253)
297 2iyv_A Shikimate kinase, SK; t 94.0 0.02 6.8E-07 50.9 2.0 22 56-77 2-23 (184)
298 2eyu_A Twitching motility prot 94.0 0.019 6.7E-07 55.0 2.1 24 55-78 24-47 (261)
299 1azs_C GS-alpha; complex (lyas 94.0 0.11 3.9E-06 52.9 7.9 36 121-163 217-252 (402)
300 2yz2_A Putative ABC transporte 93.9 0.019 6.7E-07 55.1 2.0 24 56-79 33-56 (266)
301 3fb4_A Adenylate kinase; psych 93.9 0.023 7.9E-07 51.9 2.4 21 57-77 1-21 (216)
302 3aez_A Pantothenate kinase; tr 93.7 0.026 8.9E-07 55.6 2.6 25 54-78 88-112 (312)
303 1via_A Shikimate kinase; struc 93.7 0.023 8E-07 50.2 2.0 21 57-77 5-25 (175)
304 2v54_A DTMP kinase, thymidylat 93.7 0.03 1E-06 50.4 2.8 23 55-77 3-25 (204)
305 3dl0_A Adenylate kinase; phosp 93.7 0.026 8.9E-07 51.6 2.4 21 57-77 1-21 (216)
306 1nks_A Adenylate kinase; therm 93.7 0.029 9.8E-07 49.8 2.5 21 57-77 2-22 (194)
307 3vaa_A Shikimate kinase, SK; s 93.6 0.03 1E-06 50.7 2.6 23 56-78 25-47 (199)
308 2pjz_A Hypothetical protein ST 93.6 0.026 8.9E-07 54.3 2.3 23 56-78 30-52 (263)
309 2wwf_A Thymidilate kinase, put 93.6 0.034 1.1E-06 50.4 2.9 23 55-77 9-31 (212)
310 2jeo_A Uridine-cytidine kinase 93.6 0.03 1E-06 52.6 2.6 24 55-78 24-47 (245)
311 3nh6_A ATP-binding cassette SU 93.6 0.017 5.9E-07 56.9 1.0 37 55-103 79-115 (306)
312 2ehv_A Hypothetical protein PH 93.6 0.026 8.8E-07 52.3 2.1 22 57-78 31-52 (251)
313 1kht_A Adenylate kinase; phosp 93.5 0.03 1E-06 49.6 2.5 21 57-77 4-24 (192)
314 2yvu_A Probable adenylyl-sulfa 93.5 0.034 1.2E-06 49.6 2.8 24 55-78 12-35 (186)
315 2pt5_A Shikimate kinase, SK; a 93.4 0.031 1.1E-06 48.7 2.3 21 57-77 1-21 (168)
316 1e6c_A Shikimate kinase; phosp 93.4 0.03 1E-06 49.0 2.2 22 56-77 2-23 (173)
317 1qf9_A UMP/CMP kinase, protein 93.4 0.036 1.2E-06 49.1 2.8 23 55-77 5-27 (194)
318 1lw7_A Transcriptional regulat 93.4 0.023 8E-07 56.8 1.7 24 56-79 170-193 (365)
319 1nn5_A Similar to deoxythymidy 93.4 0.037 1.3E-06 50.1 2.8 22 56-77 9-30 (215)
320 1rz3_A Hypothetical protein rb 93.4 0.037 1.3E-06 50.4 2.7 25 54-78 20-44 (201)
321 2c95_A Adenylate kinase 1; tra 93.3 0.037 1.3E-06 49.4 2.7 23 55-77 8-30 (196)
322 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.031 1E-06 55.5 2.3 23 56-78 171-193 (330)
323 2kjq_A DNAA-related protein; s 93.3 0.037 1.3E-06 48.3 2.6 23 56-78 36-58 (149)
324 2bwj_A Adenylate kinase 5; pho 93.3 0.026 9E-07 50.5 1.7 23 55-77 11-33 (199)
325 2plr_A DTMP kinase, probable t 93.3 0.036 1.2E-06 49.9 2.6 22 56-77 4-25 (213)
326 1tev_A UMP-CMP kinase; ploop, 93.3 0.035 1.2E-06 49.2 2.5 22 56-77 3-24 (196)
327 2cdn_A Adenylate kinase; phosp 93.3 0.039 1.3E-06 49.9 2.7 23 55-77 19-41 (201)
328 2bbs_A Cystic fibrosis transme 93.2 0.033 1.1E-06 54.4 2.4 24 56-79 64-87 (290)
329 4e22_A Cytidylate kinase; P-lo 93.2 0.039 1.3E-06 52.3 2.8 22 56-77 27-48 (252)
330 1aky_A Adenylate kinase; ATP:A 93.2 0.038 1.3E-06 50.8 2.6 23 55-77 3-25 (220)
331 3tui_C Methionine import ATP-b 93.2 0.031 1.1E-06 56.5 2.1 24 56-79 54-77 (366)
332 1y63_A LMAJ004144AAA protein; 93.2 0.04 1.4E-06 49.3 2.7 23 56-78 10-32 (184)
333 1m7g_A Adenylylsulfate kinase; 93.2 0.045 1.5E-06 50.1 3.0 26 52-77 21-46 (211)
334 3trf_A Shikimate kinase, SK; a 93.1 0.04 1.4E-06 48.9 2.5 22 56-77 5-26 (185)
335 1vht_A Dephospho-COA kinase; s 93.1 0.041 1.4E-06 50.4 2.6 24 55-78 3-26 (218)
336 1e4v_A Adenylate kinase; trans 93.1 0.039 1.3E-06 50.5 2.5 21 57-77 1-21 (214)
337 1sq5_A Pantothenate kinase; P- 93.1 0.04 1.4E-06 53.9 2.7 25 54-78 78-102 (308)
338 1zd8_A GTP:AMP phosphotransfer 93.1 0.041 1.4E-06 50.9 2.6 23 55-77 6-28 (227)
339 2gza_A Type IV secretion syste 93.0 0.036 1.2E-06 55.7 2.2 24 55-78 174-197 (361)
340 1uf9_A TT1252 protein; P-loop, 93.0 0.046 1.6E-06 49.0 2.7 24 55-78 7-30 (203)
341 2vli_A Antibiotic resistance p 93.0 0.045 1.6E-06 48.3 2.7 22 56-77 5-26 (183)
342 3ec2_A DNA replication protein 93.0 0.032 1.1E-06 49.5 1.6 23 56-78 38-60 (180)
343 2pbr_A DTMP kinase, thymidylat 92.9 0.041 1.4E-06 48.8 2.4 21 57-77 1-21 (195)
344 1zak_A Adenylate kinase; ATP:A 92.8 0.045 1.5E-06 50.3 2.5 23 55-77 4-26 (222)
345 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.046 1.6E-06 52.0 2.6 22 56-77 4-25 (260)
346 3jvv_A Twitching mobility prot 92.7 0.039 1.3E-06 55.5 2.0 22 57-78 124-145 (356)
347 3fvq_A Fe(3+) IONS import ATP- 92.7 0.042 1.4E-06 55.4 2.3 35 57-103 31-65 (359)
348 3tlx_A Adenylate kinase 2; str 92.7 0.05 1.7E-06 51.2 2.7 25 53-77 26-50 (243)
349 1z47_A CYSA, putative ABC-tran 92.6 0.043 1.5E-06 55.2 2.2 24 56-79 41-64 (355)
350 2pez_A Bifunctional 3'-phospho 92.6 0.054 1.8E-06 48.0 2.6 23 56-78 5-27 (179)
351 1gtv_A TMK, thymidylate kinase 92.5 0.027 9.3E-07 51.1 0.6 20 58-77 2-21 (214)
352 2yyz_A Sugar ABC transporter, 92.5 0.045 1.5E-06 55.1 2.2 35 57-103 30-64 (359)
353 1nij_A Hypothetical protein YJ 92.5 0.055 1.9E-06 53.2 2.8 23 57-79 5-27 (318)
354 3be4_A Adenylate kinase; malar 92.5 0.057 1.9E-06 49.6 2.7 22 56-77 5-26 (217)
355 3tqc_A Pantothenate kinase; bi 92.4 0.053 1.8E-06 53.7 2.6 25 54-78 90-114 (321)
356 2z0h_A DTMP kinase, thymidylat 92.4 0.054 1.8E-06 48.3 2.4 21 57-77 1-21 (197)
357 1g29_1 MALK, maltose transport 92.3 0.048 1.7E-06 55.1 2.2 35 57-103 30-64 (372)
358 2ewv_A Twitching motility prot 92.3 0.047 1.6E-06 55.1 2.0 23 56-78 136-158 (372)
359 2it1_A 362AA long hypothetical 92.3 0.049 1.7E-06 54.9 2.1 35 57-103 30-64 (362)
360 3rlf_A Maltose/maltodextrin im 92.3 0.05 1.7E-06 55.3 2.1 35 57-103 30-64 (381)
361 3iij_A Coilin-interacting nucl 92.3 0.059 2E-06 47.7 2.4 22 56-77 11-32 (180)
362 1ukz_A Uridylate kinase; trans 92.2 0.064 2.2E-06 48.4 2.7 22 56-77 15-36 (203)
363 4fid_A G protein alpha subunit 92.2 0.28 9.7E-06 48.9 7.5 36 120-162 160-195 (340)
364 1odf_A YGR205W, hypothetical 3 92.1 0.062 2.1E-06 52.4 2.6 25 54-78 29-53 (290)
365 1v43_A Sugar-binding transport 92.1 0.052 1.8E-06 54.9 2.1 36 56-103 37-72 (372)
366 2oap_1 GSPE-2, type II secreti 92.1 0.055 1.9E-06 57.0 2.3 23 56-78 260-282 (511)
367 1xjc_A MOBB protein homolog; s 92.1 0.065 2.2E-06 48.1 2.5 23 56-78 4-26 (169)
368 2vp4_A Deoxynucleoside kinase; 92.0 0.061 2.1E-06 50.0 2.3 25 55-79 19-43 (230)
369 2x8a_A Nuclear valosin-contain 92.0 0.055 1.9E-06 52.1 2.0 21 58-78 46-66 (274)
370 1cr0_A DNA primase/helicase; R 91.9 0.058 2E-06 52.0 2.1 24 56-79 35-58 (296)
371 2xb4_A Adenylate kinase; ATP-b 91.9 0.065 2.2E-06 49.6 2.4 21 57-77 1-21 (223)
372 1rj9_A FTSY, signal recognitio 91.9 0.071 2.4E-06 52.3 2.7 24 55-78 101-124 (304)
373 3gd7_A Fusion complex of cysti 91.9 0.061 2.1E-06 54.8 2.3 23 56-78 47-69 (390)
374 2p5t_B PEZT; postsegregational 91.8 0.065 2.2E-06 50.7 2.3 25 54-78 30-54 (253)
375 2w0m_A SSO2452; RECA, SSPF, un 91.8 0.061 2.1E-06 48.9 2.0 22 57-78 24-45 (235)
376 3ake_A Cytidylate kinase; CMP 91.7 0.079 2.7E-06 47.6 2.6 22 57-78 3-24 (208)
377 1p9r_A General secretion pathw 91.7 0.061 2.1E-06 55.3 2.0 22 57-78 168-189 (418)
378 3d31_A Sulfate/molybdate ABC t 91.6 0.044 1.5E-06 54.9 0.9 35 57-103 27-61 (348)
379 1uj2_A Uridine-cytidine kinase 91.6 0.078 2.7E-06 49.9 2.6 23 55-77 21-43 (252)
380 3nwj_A ATSK2; P loop, shikimat 91.5 0.073 2.5E-06 50.7 2.3 23 56-78 48-70 (250)
381 1ixz_A ATP-dependent metallopr 91.5 0.069 2.4E-06 50.1 2.0 22 58-79 51-72 (254)
382 2yl4_A ATP-binding cassette SU 91.3 0.086 3E-06 56.4 2.9 24 55-78 369-392 (595)
383 3e70_C DPA, signal recognition 91.3 0.085 2.9E-06 52.3 2.6 24 55-78 128-151 (328)
384 1yqt_A RNAse L inhibitor; ATP- 91.3 0.075 2.6E-06 56.3 2.4 26 55-80 46-71 (538)
385 3b9q_A Chloroplast SRP recepto 91.3 0.087 3E-06 51.6 2.6 24 55-78 99-122 (302)
386 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.08 2.7E-06 55.0 2.4 27 54-80 136-162 (460)
387 1oxx_K GLCV, glucose, ABC tran 91.2 0.041 1.4E-06 55.3 0.2 35 57-103 32-66 (353)
388 1ak2_A Adenylate kinase isoenz 91.2 0.095 3.3E-06 48.7 2.7 23 55-77 15-37 (233)
389 1gvn_B Zeta; postsegregational 91.2 0.11 3.6E-06 50.4 3.1 23 55-77 32-54 (287)
390 1ltq_A Polynucleotide kinase; 91.1 0.091 3.1E-06 50.5 2.6 23 56-78 2-24 (301)
391 2obl_A ESCN; ATPase, hydrolase 91.1 0.084 2.9E-06 52.8 2.4 25 55-79 70-94 (347)
392 3qf4_B Uncharacterized ABC tra 91.1 0.093 3.2E-06 56.2 2.9 37 55-103 380-416 (598)
393 3b60_A Lipid A export ATP-bind 90.9 0.088 3E-06 56.2 2.4 24 55-78 368-391 (582)
394 3r20_A Cytidylate kinase; stru 90.9 0.1 3.4E-06 49.3 2.5 23 55-77 8-30 (233)
395 3j16_B RLI1P; ribosome recycli 90.7 0.11 3.9E-06 55.8 3.1 26 56-81 103-128 (608)
396 3kta_A Chromosome segregation 90.7 0.1 3.4E-06 46.2 2.2 21 58-78 28-48 (182)
397 3ozx_A RNAse L inhibitor; ATP 90.7 0.11 3.9E-06 55.0 3.0 24 57-80 26-49 (538)
398 3sr0_A Adenylate kinase; phosp 90.6 0.11 3.6E-06 48.1 2.4 21 57-77 1-21 (206)
399 2cvh_A DNA repair and recombin 90.6 0.095 3.3E-06 47.4 2.0 22 57-78 21-42 (220)
400 4eaq_A DTMP kinase, thymidylat 90.6 0.12 4E-06 48.3 2.7 24 55-78 25-48 (229)
401 1iy2_A ATP-dependent metallopr 90.6 0.094 3.2E-06 50.0 2.0 22 58-79 75-96 (278)
402 3b5x_A Lipid A export ATP-bind 90.6 0.095 3.2E-06 55.9 2.3 25 55-79 368-392 (582)
403 1puj_A YLQF, conserved hypothe 90.5 0.072 2.5E-06 51.6 1.2 77 142-231 14-105 (282)
404 3euj_A Chromosome partition pr 90.5 0.092 3.2E-06 54.9 2.0 23 57-79 30-52 (483)
405 2f6r_A COA synthase, bifunctio 90.5 0.12 4.1E-06 49.8 2.7 23 55-77 74-96 (281)
406 1n0w_A DNA repair protein RAD5 90.4 0.1 3.5E-06 48.0 2.0 23 56-78 24-46 (243)
407 1in4_A RUVB, holliday junction 90.3 0.098 3.4E-06 51.6 2.0 23 57-79 52-74 (334)
408 4f4c_A Multidrug resistance pr 90.3 0.1 3.5E-06 61.1 2.4 37 55-103 1104-1140(1321)
409 1zuh_A Shikimate kinase; alpha 90.2 0.11 3.9E-06 45.3 2.1 21 57-77 8-28 (168)
410 2grj_A Dephospho-COA kinase; T 90.1 0.12 4.2E-06 47.1 2.3 22 56-77 12-33 (192)
411 1bif_A 6-phosphofructo-2-kinas 90.1 0.12 4.2E-06 53.5 2.6 24 54-77 37-60 (469)
412 1q3t_A Cytidylate kinase; nucl 90.1 0.14 4.8E-06 47.6 2.8 24 55-78 15-38 (236)
413 3bk7_A ABC transporter ATP-bin 90.0 0.14 4.8E-06 55.1 3.1 26 55-80 116-141 (607)
414 4a82_A Cystic fibrosis transme 89.9 0.087 3E-06 56.2 1.3 37 55-103 366-402 (578)
415 3qf4_A ABC transporter, ATP-bi 89.9 0.1 3.5E-06 55.8 1.8 37 55-103 368-404 (587)
416 2ze6_A Isopentenyl transferase 89.8 0.12 4.2E-06 48.9 2.1 21 58-78 3-23 (253)
417 4dzz_A Plasmid partitioning pr 89.8 0.28 9.7E-06 43.8 4.5 32 121-161 76-107 (206)
418 1svm_A Large T antigen; AAA+ f 89.7 0.15 5E-06 51.7 2.7 25 54-78 167-191 (377)
419 2dpy_A FLII, flagellum-specifi 89.7 0.13 4.4E-06 53.1 2.4 25 55-79 156-180 (438)
420 2og2_A Putative signal recogni 89.6 0.15 5E-06 51.4 2.6 23 56-78 157-179 (359)
421 1yqt_A RNAse L inhibitor; ATP- 89.4 0.18 6.3E-06 53.3 3.3 24 56-79 312-335 (538)
422 3qf7_A RAD50; ABC-ATPase, ATPa 89.4 0.13 4.6E-06 51.5 2.1 20 58-77 25-44 (365)
423 2yhs_A FTSY, cell division pro 89.3 0.16 5.3E-06 53.4 2.6 23 56-78 293-315 (503)
424 3gmt_A Adenylate kinase; ssgci 89.3 0.16 5.3E-06 48.0 2.4 22 56-77 8-29 (230)
425 3ozx_A RNAse L inhibitor; ATP 89.2 0.17 5.7E-06 53.7 2.9 24 56-79 294-317 (538)
426 2dhr_A FTSH; AAA+ protein, hex 88.6 0.17 5.9E-06 53.1 2.4 22 58-79 66-87 (499)
427 3cr8_A Sulfate adenylyltranfer 88.5 0.14 4.8E-06 54.4 1.7 26 53-78 366-391 (552)
428 3bk7_A ABC transporter ATP-bin 88.5 0.23 8E-06 53.3 3.4 24 56-79 382-405 (607)
429 1nlf_A Regulatory protein REPA 88.2 0.18 6.3E-06 48.0 2.1 23 56-78 30-52 (279)
430 1p5z_B DCK, deoxycytidine kina 88.1 0.16 5.6E-06 48.0 1.6 23 55-77 23-45 (263)
431 1jbk_A CLPB protein; beta barr 88.0 0.25 8.5E-06 42.8 2.7 22 56-77 43-64 (195)
432 3j16_B RLI1P; ribosome recycli 88.0 0.18 6.2E-06 54.2 2.1 23 58-80 380-402 (608)
433 1f2t_A RAD50 ABC-ATPase; DNA d 88.0 0.19 6.4E-06 43.7 1.9 20 58-77 25-44 (149)
434 3umf_A Adenylate kinase; rossm 87.8 0.26 8.7E-06 46.0 2.8 23 55-77 28-50 (217)
435 1zcb_A G alpha I/13; GTP-bindi 87.8 0.22 7.7E-06 50.0 2.6 26 52-77 29-54 (362)
436 2px0_A Flagellar biosynthesis 87.2 0.28 9.6E-06 47.7 2.8 23 56-78 105-127 (296)
437 1lv7_A FTSH; alpha/beta domain 87.1 0.23 7.8E-06 46.5 2.0 23 56-78 45-67 (257)
438 1qhl_A Protein (cell division 86.7 0.047 1.6E-06 51.4 -3.0 21 58-78 29-49 (227)
439 1a7j_A Phosphoribulokinase; tr 86.6 0.3 1E-05 47.3 2.6 22 56-77 5-26 (290)
440 2h92_A Cytidylate kinase; ross 86.5 0.27 9.3E-06 44.7 2.2 22 56-77 3-24 (219)
441 3v9p_A DTMP kinase, thymidylat 86.5 0.19 6.5E-06 47.1 1.1 23 55-77 24-46 (227)
442 4edh_A DTMP kinase, thymidylat 86.3 0.22 7.7E-06 46.0 1.4 22 56-77 6-27 (213)
443 2ocp_A DGK, deoxyguanosine kin 86.3 0.34 1.1E-05 45.1 2.7 22 56-77 2-23 (241)
444 2dr3_A UPF0273 protein PH0284; 85.9 0.31 1.1E-05 44.7 2.2 21 57-77 24-44 (247)
445 1vma_A Cell division protein F 85.8 0.35 1.2E-05 47.4 2.6 24 55-78 103-126 (306)
446 3g5u_A MCG1178, multidrug resi 85.6 0.28 9.6E-06 57.3 2.1 25 55-79 415-439 (1284)
447 2iw3_A Elongation factor 3A; a 85.5 0.18 6.3E-06 57.0 0.5 25 55-79 698-722 (986)
448 2iw3_A Elongation factor 3A; a 85.5 0.34 1.2E-05 54.9 2.6 25 55-79 460-484 (986)
449 1pzn_A RAD51, DNA repair and r 85.3 0.32 1.1E-05 48.4 2.1 24 56-79 131-154 (349)
450 4f4c_A Multidrug resistance pr 85.3 0.31 1.1E-05 57.0 2.3 24 55-78 443-466 (1321)
451 3zvl_A Bifunctional polynucleo 85.2 0.37 1.3E-05 49.1 2.6 23 55-77 257-279 (416)
452 3cnl_A YLQF, putative uncharac 85.1 0.22 7.5E-06 47.6 0.8 83 143-229 13-98 (262)
453 3bos_A Putative DNA replicatio 85.0 0.42 1.4E-05 43.3 2.7 23 55-77 51-73 (242)
454 3crm_A TRNA delta(2)-isopenten 84.9 0.41 1.4E-05 47.4 2.6 24 55-78 4-27 (323)
455 2p65_A Hypothetical protein PF 84.7 0.35 1.2E-05 41.9 1.9 22 56-77 43-64 (187)
456 2g3y_A GTP-binding protein GEM 84.7 0.58 2E-05 42.9 3.5 49 256-307 144-192 (211)
457 2w58_A DNAI, primosome compone 84.7 0.38 1.3E-05 43.1 2.1 22 57-78 55-76 (202)
458 3cwq_A Para family chromosome 84.5 0.39 1.3E-05 43.9 2.2 32 121-161 68-100 (209)
459 4aby_A DNA repair protein RECN 84.4 0.17 5.9E-06 51.0 -0.4 21 58-78 62-82 (415)
460 3pxg_A Negative regulator of g 84.4 0.62 2.1E-05 48.2 3.9 23 56-78 201-223 (468)
461 3ux8_A Excinuclease ABC, A sub 84.2 0.28 9.6E-06 53.1 1.2 21 57-77 349-369 (670)
462 3d3q_A TRNA delta(2)-isopenten 84.1 0.45 1.5E-05 47.4 2.6 22 57-78 8-29 (340)
463 3lv8_A DTMP kinase, thymidylat 84.1 0.31 1.1E-05 46.0 1.3 22 56-77 27-48 (236)
464 3g5u_A MCG1178, multidrug resi 84.0 0.38 1.3E-05 56.1 2.3 37 55-103 1058-1094(1284)
465 1tf7_A KAIC; homohexamer, hexa 84.0 0.39 1.3E-05 50.4 2.1 21 56-76 39-59 (525)
466 1z0j_A RAB-22, RAS-related pro 83.7 2 6.7E-05 36.3 6.3 47 256-305 110-156 (170)
467 3ld9_A DTMP kinase, thymidylat 83.7 0.26 9E-06 46.1 0.6 23 55-77 20-42 (223)
468 3qks_A DNA double-strand break 83.6 0.44 1.5E-05 43.4 2.1 21 57-77 24-44 (203)
469 1tue_A Replication protein E1; 83.6 0.34 1.1E-05 45.1 1.3 20 58-77 60-79 (212)
470 1ko7_A HPR kinase/phosphatase; 83.4 0.46 1.6E-05 46.8 2.3 25 56-80 144-168 (314)
471 2qmh_A HPR kinase/phosphorylas 83.3 0.67 2.3E-05 42.8 3.2 23 56-78 34-56 (205)
472 1e69_A Chromosome segregation 83.3 0.54 1.9E-05 45.9 2.8 20 58-77 26-45 (322)
473 2ga8_A Hypothetical 39.9 kDa p 83.3 0.53 1.8E-05 47.2 2.7 23 56-78 24-46 (359)
474 1njg_A DNA polymerase III subu 83.3 0.47 1.6E-05 42.6 2.1 22 57-78 46-67 (250)
475 1sxj_E Activator 1 40 kDa subu 83.3 0.44 1.5E-05 46.6 2.0 21 58-78 38-58 (354)
476 1xwi_A SKD1 protein; VPS4B, AA 83.1 0.34 1.2E-05 47.5 1.2 23 56-78 45-67 (322)
477 2qby_A CDC6 homolog 1, cell di 82.6 0.5 1.7E-05 46.2 2.2 23 56-78 45-67 (386)
478 3n70_A Transport activator; si 82.6 0.76 2.6E-05 39.2 3.1 23 55-77 23-45 (145)
479 3co5_A Putative two-component 82.4 0.7 2.4E-05 39.3 2.8 23 55-77 26-48 (143)
480 2chg_A Replication factor C sm 82.3 0.54 1.8E-05 41.7 2.1 20 58-77 40-59 (226)
481 4tmk_A Protein (thymidylate ki 82.3 0.4 1.4E-05 44.4 1.3 22 56-77 3-24 (213)
482 2axn_A 6-phosphofructo-2-kinas 82.3 0.58 2E-05 49.2 2.7 23 55-77 34-56 (520)
483 4b4t_L 26S protease subunit RP 82.0 0.99 3.4E-05 46.5 4.2 26 53-78 212-237 (437)
484 3b9p_A CG5977-PA, isoform A; A 81.8 0.54 1.9E-05 44.8 2.0 23 56-78 54-76 (297)
485 1t9h_A YLOQ, probable GTPase E 81.7 0.59 2E-05 45.8 2.3 49 256-308 116-167 (307)
486 3tqf_A HPR(Ser) kinase; transf 81.5 0.64 2.2E-05 42.0 2.2 23 57-79 17-39 (181)
487 3reg_A RHO-like small GTPase; 81.4 3.2 0.00011 36.3 6.9 48 256-305 126-175 (194)
488 1fnn_A CDC6P, cell division co 81.3 0.63 2.2E-05 45.7 2.4 21 58-78 46-66 (389)
489 2cjw_A GTP-binding protein GEM 81.3 1.6 5.5E-05 38.7 4.9 50 256-308 113-162 (192)
490 1w1w_A Structural maintenance 81.1 0.58 2E-05 47.7 2.0 22 57-78 27-48 (430)
491 3h4m_A Proteasome-activating n 81.0 0.76 2.6E-05 43.4 2.7 24 55-78 50-73 (285)
492 1x6v_B Bifunctional 3'-phospho 80.9 0.76 2.6E-05 49.5 3.0 23 55-77 51-73 (630)
493 1tf7_A KAIC; homohexamer, hexa 80.8 0.6 2.1E-05 48.9 2.1 25 55-79 280-304 (525)
494 3cf0_A Transitional endoplasmi 80.5 0.65 2.2E-05 44.8 2.1 24 55-78 48-71 (301)
495 2zan_A Vacuolar protein sortin 80.4 0.53 1.8E-05 48.3 1.5 23 56-78 167-189 (444)
496 4hlc_A DTMP kinase, thymidylat 80.4 0.56 1.9E-05 43.0 1.5 22 56-77 2-23 (205)
497 3lda_A DNA repair protein RAD5 80.3 0.67 2.3E-05 47.1 2.2 21 57-77 179-199 (400)
498 2qz4_A Paraplegin; AAA+, SPG7, 80.2 0.83 2.8E-05 42.3 2.7 23 56-78 39-61 (262)
499 1zu4_A FTSY; GTPase, signal re 79.9 0.81 2.8E-05 45.0 2.6 23 56-78 105-127 (320)
500 4b4t_J 26S protease regulatory 79.8 0.38 1.3E-05 49.1 0.2 26 53-78 179-204 (405)
No 1
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.8e-84 Score=660.33 Aligned_cols=360 Identities=49% Similarity=0.821 Sum_probs=324.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
|.++|+|||.||||||||||+|++.. +.++++||||++|+.+.+.+++.+++.++++++|.+.++.++.+|||||+.++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 45799999999999999999999654 88999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
++.+++++++|+.++++||+++||+|++++.++.++.|+.||++|+..++.||.++|.+.++++++++.+..+.+. +
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~---~ 156 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGD---K 156 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---H
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccc---h
Confidence 8888899999999999999999999999999999999999999999999999999999999999999887654333 3
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
....+.++++++.+.|+++.|++..+|++++.++++++.+++.||++|++|+++.++ ++ +.+.+++++++.+++.++
T Consensus 157 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~--n~~~~~v~~~~~~~~~~~ 233 (363)
T 1jal_A 157 EAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-EN--NPYLDRVREIAAKEGAVV 233 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SS--CHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cc--cHHHHHHHHHHHHcCCCE
Confidence 445677899999999999999998899999999999999999999999999998776 33 789999999998888999
Q ss_pred EEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhh
Q 012870 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFE 374 (454)
Q Consensus 295 v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~ 374 (454)
|++||+.|.+|.+|+++++.+||+++|+.++|++++++++|++||||+|||+||+|+|||||++|+||+||||+|||||+
T Consensus 234 i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~ 313 (363)
T 1jal_A 234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFE 313 (363)
T ss_dssp EEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHH
T ss_pred EEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEeh
Q 012870 375 KGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWN 421 (454)
Q Consensus 375 kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~ 421 (454)
|||||||||+|+||+++||+++||++||+|+||++|.+| |+++||||
T Consensus 314 ~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn 362 (363)
T 1jal_A 314 KGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFN 362 (363)
T ss_dssp HHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESC
T ss_pred hccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEec
Confidence 999999999999999999999999999999999999999 99999999
No 2
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=1.4e-81 Score=647.19 Aligned_cols=366 Identities=39% Similarity=0.605 Sum_probs=340.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
.+..+|||||.||||||||||+|+|...+.++++||||++|+.|.+.+++.|++.++++++|.+.++.++.++||||+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 45689999999999999999999987766999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhc-ccCCC-c
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDS-Q 211 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~-~~~~~-v 211 (454)
+.+.++++++.|+.+++++|++++|+|++++.++.++.+..||++|+.++.+|+..+|.+.+++.++.+.+. ...+. +
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti 177 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL 177 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 998889999999999999999999999999999999999999999999999999999999999999888776 43322 2
Q ss_pred cccchHHHHHHHHHHHHhhhCC-CCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccC-CCCCCccHHHHHHHHhh
Q 012870 212 SKLKEDAEKAALEKIQQALMDG-KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASD 289 (454)
Q Consensus 212 Sak~~~~~~~ll~~i~~~L~~~-~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~-~~~~~~~~~~i~~~~~~ 289 (454)
.++.+.++.++++++.+.|++| ++++..+|++++.++++++++++.||++|++|++++++. ++ +++++++++++.+
T Consensus 178 ~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~--~~~~~~~~~~~~~ 255 (392)
T 1ni3_A 178 EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQK--NKYLPKIKKWIDE 255 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHHHTTTC--CSSHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchhhcccc--hHHHHHHHHHHHh
Confidence 2677888999999999999999 999888899999999999999999999999999987776 33 7889999999987
Q ss_pred cC--CcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhh
Q 012870 290 LQ--SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAG 367 (454)
Q Consensus 290 ~~--~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg 367 (454)
++ .++|++||+.|.+|++|+++|+.+||+++| .++|++++++++|++||||+|||+||+|+|||||++||||+||||
T Consensus 256 ~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g-~~~gl~~~i~~~~~~L~l~~~ft~g~~e~rawti~~G~~a~~aag 334 (392)
T 1ni3_A 256 NSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLN-TKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAG 334 (392)
T ss_dssp TSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTEEEEEECCSSEEEEEEEETTCBHHHHHH
T ss_pred cCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhC-CcccHHHHHHHHHHHhCCEEEECCCCCcceeEEeCCCCcHHHHcc
Confidence 65 789999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEehh
Q 012870 368 VIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWNS 422 (454)
Q Consensus 368 ~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~~ 422 (454)
+|||||+|||||||||+|+||+++||+++||++||+|+||++|.+| |+++||||-
T Consensus 335 ~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 335 VIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp HHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC---
T ss_pred ccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEccC
Confidence 9999999999999999999999999999999999999999999999 999999994
No 3
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=7e-82 Score=648.51 Aligned_cols=365 Identities=41% Similarity=0.663 Sum_probs=299.0
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
..+.++|+|||.||||||||||+|+|. ...++++||||++|+.+.+.+++.+++.+++++.|.+.++.++.+|||||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~-~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS-QASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC-CccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 346689999999999999999999954 4589999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcc
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vS 212 (454)
++++.++++++.|+.++++||+++||+|++++.++.++.+..||++|++.+++|+.+++.+.++++++++.+...++.
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g-- 175 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGG-- 175 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC------
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhccc--
Confidence 999888899999999999999999999999999999999999999999999999999999999998887765532211
Q ss_pred ccchHHHHHHHHHHHHhhhCC-CCCC-CCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhh-
Q 012870 213 KLKEDAEKAALEKIQQALMDG-KPAR-SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD- 289 (454)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~~~-~~~~-~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~- 289 (454)
++.+..+.++++.+.+.|+++ ++++ ..+|++++.+++++++++|+||+||++|++++++.++ .+.+++++++++..
T Consensus 176 ~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~~-~n~~~~~v~~~~~~~ 254 (396)
T 2ohf_A 176 DKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRK-KNKWLIKIKEWVDKY 254 (396)
T ss_dssp ----CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHHT-CCHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhccc-ccHHHHHHHHHHHhh
Confidence 356667889999999999999 7776 3489999999999999999999999999998888643 27889999998875
Q ss_pred -cCCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhh
Q 012870 290 -LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGV 368 (454)
Q Consensus 290 -~~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~ 368 (454)
.+.++|++||+.|.+|++|+++|+.+||+++|++ +|+++|++++|++||||+|||+||+|+|||||++|+||+||||+
T Consensus 255 ~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~-~~l~~li~~~~~~L~li~~fT~g~~evrawti~~g~ta~~aAg~ 333 (396)
T 2ohf_A 255 DPGALVIPFSGALELKLQELSAEERQKYLEANMTQ-SALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGK 333 (396)
T ss_dssp STTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCC-CSHHHHHHHHHHHTTEEEEEEESSSEEEEEEEETTCBHHHHHHT
T ss_pred CCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCC-chHHHHHHHHHHHhCCEEEECCCCCcceeEEecCCCcHHHHHhh
Confidence 3678999999999999999999999999999985 99999999999999999999999999999999999999999999
Q ss_pred hchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEehh
Q 012870 369 IHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWNS 422 (454)
Q Consensus 369 IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~~ 422 (454)
|||||+|||||||||+|+||+++||+++||++||+|+||++|++| |+++||||-
T Consensus 334 IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 334 IHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp TCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC-
T ss_pred hHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999 999999995
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=1.8e-80 Score=634.95 Aligned_cols=360 Identities=50% Similarity=0.760 Sum_probs=323.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCcc----ccCceeEEEecCCcc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK----AVPASVEFVDIAGLV 132 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~----~~~~~i~lvDtpGl~ 132 (454)
++|+|||.||||||||||+|++. .+.++++||||++|+.+.+.+++++++.++.++++.+ ..+.++.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999965 4788999999999999999999999999999999988 667899999999999
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcc
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vS 212 (454)
++++.+++++++|+.++++||+++||+|++++.++.++.+++||.+|+..++.||.++|.+.++++++++.+..+.
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~---- 156 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARA---- 156 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhcc----
Confidence 9998888999999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred ccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCC
Q 012870 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292 (454)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~ 292 (454)
.+......++++++.+.|+++.+++..+|++++.++++.+.+++.||++|++|++++++.+.+++.+++++++++++++.
T Consensus 157 ~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~ 236 (368)
T 2dby_A 157 DRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGA 236 (368)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCC
Confidence 23455677889999999999998887789999999999999999999999999998776542126789999999988889
Q ss_pred cEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCCCCHHHHhhhhchh
Q 012870 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSD 372 (454)
Q Consensus 293 ~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD 372 (454)
+++++||+.|.+|.+|+++++.+||+++|+.++|++++++++|++||||+|||+||+|+|||||++|+||+||||+||||
T Consensus 237 ~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d 316 (368)
T 2dby_A 237 EVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSD 316 (368)
T ss_dssp EEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHH
T ss_pred eEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEEEeh
Q 012870 373 FEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYFHWN 421 (454)
Q Consensus 373 ~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~~~~ 421 (454)
|+|||||||||+|+||+++||+++||++||+|+||++|.+| |+++||||
T Consensus 317 ~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~ 367 (368)
T 2dby_A 317 MERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFN 367 (368)
T ss_dssp HHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC-
T ss_pred HHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEec
Confidence 99999999999999999999999999999999999999999 99999999
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=6.8e-53 Score=435.56 Aligned_cols=334 Identities=24% Similarity=0.330 Sum_probs=232.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeee----eeCCCccchhc-----ccccCccccCceeEEEe
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV----AVPDPRLHVLS-----GLSKSQKAVPASVEFVD 127 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~----~~~d~r~~~l~-----~~~~~~~~~~~~i~lvD 127 (454)
++|+|||.||||||||||+|++.. +.++++||||++|+.+.+ .+++++++.++ .++++.+. .++.|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~--~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLAL--IPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEE--EEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcce--EEEEEEE
Confidence 489999999999999999999655 889999999999999974 45677765543 22232222 4699999
Q ss_pred cCCccCCCCcccccccccccchhccceEEEEEeccCCcce-EEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcc
Q 012870 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI-VHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (454)
Q Consensus 128 tpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v-~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~ 206 (454)
|||+.++++.+++++++|+.++++||++++|+|++++..+ ..+....||++|++.++.||.++|.+.++++++++.+..
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999988888888999999999999999999999876211 111125599999999999999999999999999888655
Q ss_pred cCCCccccchH-------H-HHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCc
Q 012870 207 AKDSQSKLKED-------A-EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNP 278 (454)
Q Consensus 207 ~~~~vSak~~~-------~-~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~ 278 (454)
..+..++.... + ..+.+..+.+.+..+.+. .+||+++...+..+.+++.+|++|++||.|.. . +.
T Consensus 158 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~---~--~~ 230 (397)
T 1wxq_A 158 KLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---S--DE 230 (397)
T ss_dssp TSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---C--HH
T ss_pred hhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc---c--hH
Confidence 43322211100 0 023456666677666652 37999888888888888999999999998642 2 45
Q ss_pred cHHHHHHHHhhcCCcEEEechhhhHHhcCC---------------------CHHHHH-------HHHHHcCCCCchHHHH
Q 012870 279 HVNEVMNLASDLQSGRVTISAQVEAELTEL---------------------PSEERV-------EYLASLGVSESGLGNL 330 (454)
Q Consensus 279 ~~~~i~~~~~~~~~~~v~iSA~~E~~l~~l---------------------~~ee~~-------e~l~~~gl~~~~l~~l 330 (454)
+++++.+.....+.+++++||+.|.+|.+| ++++++ +||+.+| +||++++
T Consensus 231 ~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g--~~g~~~~ 308 (397)
T 1wxq_A 231 QIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG--STGVQEV 308 (397)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS--SCSHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC--cchHHHH
Confidence 667777665545678999999999999763 444444 5667888 8999999
Q ss_pred HH-HHHhHhCCeEEecCCC----------CCeeeEEecCCCCHHHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHH
Q 012870 331 IR-STYSLLGLRTYFTSGE----------KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399 (454)
Q Consensus 331 i~-~~~~~L~li~ffT~g~----------~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~ 399 (454)
|+ ++|++||||+|||+|+ ++++||++++|+||+|+|++|||||+++|++|+ ++
T Consensus 309 i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~----------------~~ 372 (397)
T 1wxq_A 309 INRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI----------------NA 372 (397)
T ss_dssp HHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE----------------ET
T ss_pred HHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH----------------Hh
Confidence 96 6699999999999873 467999999999999999999999999999998 35
Q ss_pred cCCeeecccccccc--eeeEEE
Q 012870 400 KGLVSWLHYHEHLA--SYKYFH 419 (454)
Q Consensus 400 ~gk~r~eg~~~~~~--~~~~~~ 419 (454)
+|+.|. |++|.++ |++.|.
T Consensus 373 ~~~~~~-g~~~~l~dgDvv~i~ 393 (397)
T 1wxq_A 373 RTKRRV-GEDYELQFNDIVKIV 393 (397)
T ss_dssp TTCSBC-CTTCCCCTTEEEEEE
T ss_pred cCCEEc-CCCccccCCCEEEEE
Confidence 687775 9999999 666664
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-50 Score=411.67 Aligned_cols=291 Identities=19% Similarity=0.275 Sum_probs=209.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
+...+|||||+||||||||||+||| ..+.++++||||++|+.|.+.+++ .+++|+||||+++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~-~~~~v~~~pftT~~~~~g~~~~~~-----------------~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTG-TESEAAEYEFTTLVTVPGVIRYKG-----------------AKIQMLDLPGIID 131 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHS-BCCCGGGTCSSCCCEEEEEEEETT-----------------EEEEEEECGGGCC
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhC-CCCcccCCCCceeeeeeEEEEeCC-----------------cEEEEEeCCCccC
Confidence 3457999999999999999999994 568899999999999999999985 6799999999999
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+++.+.+++++|++++++||+|++|+|++ ||+++++.++.||..++.....++...+......+.
T Consensus 132 ~a~~~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g--- 196 (376)
T 4a9a_A 132 GAKDGRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG--- 196 (376)
T ss_dssp C-----CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC---
T ss_pred CchhhhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh---
Confidence 99999999999999999999999999985 577888888888766554321111000000000000
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
+.-........+++++...+...++++.+|++|++|+.++++. + +.+.......|
T Consensus 197 ----------------i~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~--------d-~~~~~~~~~~p 251 (376)
T 4a9a_A 197 ----------------ISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLI--------D-VLEASSRRYMP 251 (376)
T ss_dssp ----------------EEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHH--------H-HHTTTTCEEEC
T ss_pred ----------------hhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHH--------H-HHHHHHhhccc
Confidence 0001112223567777777777888899999999888754432 1 11112222456
Q ss_pred EEEechhhhHHhcCCCHHHHHH------HHHHcCCCCchHHHHHHHHHhHhCCeEEecCCCCCeeeEEecCC-----CCH
Q 012870 294 RVTISAQVEAELTELPSEERVE------YLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG-----MTA 362 (454)
Q Consensus 294 ~v~iSA~~E~~l~~l~~ee~~e------~l~~~gl~~~~l~~li~~~~~~L~li~ffT~g~~e~raw~i~~G-----sta 362 (454)
++.++++.+. ++.++... ++...+..++|+++|++++|++||||+|||+||+|+||||++.| +|+
T Consensus 252 ~i~v~nKid~----~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~ 327 (376)
T 4a9a_A 252 AIYVLNKIDS----LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSV 327 (376)
T ss_dssp EEEEEECGGG----SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBH
T ss_pred eEEEEecccc----cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcH
Confidence 7777777642 22222111 12223456789999999999999999999999999999997644 667
Q ss_pred HHHhhhhchhhhhCceEEEEeehhhHhhcCCHHHHHHcCCeeecccccccc--eeeEE
Q 012870 363 PQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLVSWLHYHEHLA--SYKYF 418 (454)
Q Consensus 363 ~~aAg~IHsD~~kgFi~AeV~~~~d~~~~g~~~~~k~~gk~r~eg~~~~~~--~~~~~ 418 (454)
.|+|+.||+||.++|++|+||+ + .||.+| |+||++|.++ |+.-|
T Consensus 328 ~D~a~~ih~d~~~~F~~a~v~G--------s--~~K~~~--r~eGkdyvv~DGDVi~i 373 (376)
T 4a9a_A 328 KDFCNQIHKSLVDDFRNALVYG--------S--SVKHQP--QYVGLSHILEDEDVVTI 373 (376)
T ss_dssp HHHHHHHCGGGGGGEEEEEEES--------T--TSSSSS--EEECTTCBCCTTCEEEE
T ss_pred HHHHHHHHHHHHHhhhHhhhcC--------c--ccCCCC--CccCCCcEEcCCCEEEE
Confidence 7889999999999999999985 3 356666 8999999999 55543
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=2.8e-20 Score=185.35 Aligned_cols=189 Identities=21% Similarity=0.286 Sum_probs=139.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
...|+|+|.||||||||+|+|+|...+.+++.|+||++...+....+. ..++.||||||+.+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~----------------~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN----------------EAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT----------------TEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC----------------CCeEEEEECcCCCccc
Confidence 458999999999999999999988888899999999999998887662 2679999999998654
Q ss_pred --Cc-ccccccccccchhccceEEEEEeccCC-----------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 136 --SQ-GEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 136 --~~-~~~l~~~fl~~ir~aD~il~VvD~~~~-----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
.. ++.+...+...++.||++++|+|+++. .+++.+.|+.|...+-..+
T Consensus 74 ~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~------------ 141 (308)
T 3iev_A 74 KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNV------------ 141 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGG------------
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHH------------
Confidence 21 223334456678899999999999863 3456677777755221111
Q ss_pred HHHHHHHHhc----ccCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HHHHHH-HHhhhccCcEEEEE
Q 012870 196 EKRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVA 264 (454)
Q Consensus 196 ~~~~~~~~~~----~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~e~lr-~~~~lt~kpi~~v~ 264 (454)
....+.+... .+..++||++|.|+.++++.+.+.++++++.++. .+++. ..+++| +++..+.+++||.+
T Consensus 142 ~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~ 221 (308)
T 3iev_A 142 LPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSI 221 (308)
T ss_dssp HHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHC
T ss_pred HHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCee
Confidence 1112222222 2234589999999999999999999999888875 34433 356677 57778999999998
Q ss_pred eccccccC
Q 012870 265 NVAESDLA 272 (454)
Q Consensus 265 N~~~~d~~ 272 (454)
.+..+.+.
T Consensus 222 ~v~i~~~~ 229 (308)
T 3iev_A 222 AVKINEIK 229 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEeEEEE
Confidence 88765554
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=7.2e-20 Score=182.06 Aligned_cols=187 Identities=22% Similarity=0.217 Sum_probs=132.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
.+|+|||.||||||||+|+|+|...+.+++.|+||++...+.+..+ +.++.||||||+.++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~-----------------~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-----------------RRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-----------------TEEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC-----------------CcEEEEecCccccchhh
Confidence 5799999999999999999998888889999999999887776544 36799999999976543
Q ss_pred c-ccccccccccchhccceEEEEEeccCC------------------cceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 137 ~-~~~l~~~fl~~ir~aD~il~VvD~~~~------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
. ++.+...+...+++||++++|+|+++. .+++.+.|+.|....-.. +..
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~ 138 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE------------AMK 138 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH------------HHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH------------HHH
Confidence 2 222334556778999999999998752 224445555554321110 112
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CC-CHH-----HHHHHH-HHhhhccCcEEEEEecccc
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TL-NDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~l-t~e-----e~e~lr-~~~~lt~kpi~~v~N~~~~ 269 (454)
....+....+..++||+++.|+.++++.+.+.+++++++++. .+ |+. ..+++| ++...+...+||.+.+..+
T Consensus 139 ~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~ 218 (301)
T 1wf3_A 139 AYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVE 218 (301)
T ss_dssp HHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEE
T ss_pred HHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEE
Confidence 222221111224589999999999999999999988877764 34 433 346666 6667788999998888766
Q ss_pred ccC
Q 012870 270 DLA 272 (454)
Q Consensus 270 d~~ 272 (454)
.+.
T Consensus 219 ~~~ 221 (301)
T 1wf3_A 219 EVA 221 (301)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 9
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=5.2e-20 Score=187.77 Aligned_cols=200 Identities=22% Similarity=0.249 Sum_probs=105.6
Q ss_pred ccccccccccccccCCCCCCchhhhhhhccccCCCCCCcch----hh-------------hh------hhhhccccCCc-
Q 012870 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS----SR-------------RR------FSSASKISMSL- 57 (454)
Q Consensus 2 v~lA~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~g~~~~~----~~-------------~~------~~~~~~~~~~~- 57 (454)
|+||+|+|.+|++ ..|..+ .+.++++|.+|+|+.. ++ .. ..+..+.+...
T Consensus 107 ~~la~l~~~~~rl-~~~~~l-----~~~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~ 180 (364)
T 2qtf_A 107 IELARLKYELPII-KETYTK-----SKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIP 180 (364)
T ss_dssp HHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC-------------CC
T ss_pred HHHHHHhhhchhh-hhhhHH-----HHhcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 6899999999999 545444 4567788888888721 11 00 01111122234
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
.|+|+|+||||||||+|+|+|. ...++++||+|+++..+.+.+++ ..+.++||||++...+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~-~~~~~~~~~~T~d~~~~~i~~~g-----------------~~v~l~DT~G~i~~lp~ 242 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL-TQKVDTKLFTTMSPKRYAIPINN-----------------RKIMLVDTVGFIRGIPP 242 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETT-----------------EEEEEEECCCBCSSCCG
T ss_pred EEEEECCCCCCHHHHHHHHHCC-CccccCCcccccCCEEEEEEECC-----------------EEEEEEeCCCchhcCCH
Confidence 4999999999999999999954 46888999999999999998874 45899999999764332
Q ss_pred cccccc---ccccchhccceEEEEEeccCCc----------------------ceEEecCccCCCChhHHHhHhhhcccH
Q 012870 138 GEGLGN---KFLSHIREVDSILQVVRCFEDN----------------------DIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 138 ~~~l~~---~fl~~ir~aD~il~VvD~~~~~----------------------~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
.+.+ ..+..++.||++++|+|+++.. +++.|.|+.|....-.. . ..
T Consensus 243 --~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~--~-----~~ 313 (364)
T 2qtf_A 243 --QIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLY--K-----KL 313 (364)
T ss_dssp --GGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH--H-----HH
T ss_pred --HHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHH--H-----HH
Confidence 2333 3356788999999999987643 22334444443221000 0 00
Q ss_pred HHHHHHHHHH-HhcccCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 193 DQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 193 ~~l~~~~~~~-~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
+.+......+ ....+..++||+++.|+.++++.+.+.+....
T Consensus 314 ~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 314 DLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 0000001111 11112245899999999999999988886543
No 10
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.79 E-value=1.5e-19 Score=182.90 Aligned_cols=151 Identities=31% Similarity=0.494 Sum_probs=111.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+|||+||||||||+|+|+ .....++++||+|.+|+.+.+.+++ ..++.+|||||+..++
T Consensus 158 la~V~lvG~~nvGKSTLln~L~-~~~~~i~~~~ftTl~p~~g~v~~~~----------------~~~~~l~DtPG~i~~a 220 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVS-SAKPKIADYHFTTLVPNLGMVETDD----------------GRSFVMADLPGLIEGA 220 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSE-EECCEESSTTSSCCCCCEEEEECSS----------------SCEEEEEEHHHHHHHT
T ss_pred cCeeeeeCCCCCCHHHHHHHHH-cCCCccccCCccccCceEEEEEeCC----------------CceEEEecCCCCcccc
Confidence 3579999999999999999999 4556789999999999999988875 2469999999998888
Q ss_pred CcccccccccccchhccceEEEEEeccC---Ccc----------------------eEEecCccCCCChhHHHhHhhhcc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---DND----------------------IVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~---~~~----------------------v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
+...+++..|+.+++++|+++||+|+++ ..+ ++.+.|+.|....
T Consensus 221 ~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----------- 289 (342)
T 1lnz_A 221 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----------- 289 (342)
T ss_dssp TCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----------
T ss_pred cccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----------
Confidence 7777899999999999999999999975 221 1222233332211
Q ss_pred cHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCC
Q 012870 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (454)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~ 235 (454)
.+.++...+.+....+..++||+++.++.+|++.+.+.+.+.+.
T Consensus 290 -~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 290 -AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp -HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred -HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 01111111111111233459999999999999999999977543
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=2.6e-18 Score=170.66 Aligned_cols=187 Identities=19% Similarity=0.165 Sum_probs=132.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc-CCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV-KGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~-~~~ 135 (454)
..|+|||.||||||||+|+|+|...+.+++.|++|++...+.+..+ +.++.++||||+. ...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~-----------------~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-----------------AYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-----------------TEEEEEESSSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC-----------------CeeEEEEECcCCCccch
Confidence 4799999999999999999998877788999999998888877654 3579999999996 221
Q ss_pred Cc-ccccccccccchhccceEEEEEeccC---------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFE---------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 136 ~~-~~~l~~~fl~~ir~aD~il~VvD~~~---------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
.. ++.+.......++.+|++++|+|+++ ..+++.+.|+.|...+... +...+
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~------------~~~~l 139 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKAD------------LLPHL 139 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHH------------HHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHH------------HHHHH
Confidence 11 11233445667889999999999854 2345666677776542111 12222
Q ss_pred HHHHhcc---cCCCccccchHHHHHHHHHHHHhhhCCCCCCCC-CCCHH-----HHHHHH-HHhhhccCcEEEEEecccc
Q 012870 200 EKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (454)
Q Consensus 200 ~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~-~lt~e-----e~e~lr-~~~~lt~kpi~~v~N~~~~ 269 (454)
..+.... ...++||+++.++..+++.+.+.++++++.++. .+|+. ..+++| ++...+..++||.+.+..+
T Consensus 140 ~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~ 219 (301)
T 1ega_A 140 QFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIE 219 (301)
T ss_dssp HHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEE
T ss_pred HHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 3333222 124589999999999999999999998877764 33333 345566 6667788998888777665
Q ss_pred ccC
Q 012870 270 DLA 272 (454)
Q Consensus 270 d~~ 272 (454)
++.
T Consensus 220 ~~~ 222 (301)
T 1ega_A 220 RFV 222 (301)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 12
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.72 E-value=2.2e-17 Score=171.04 Aligned_cols=237 Identities=24% Similarity=0.364 Sum_probs=157.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
...|+|||+||||||||+|+|+ .....++++|++|..|+.+.+..++ ...+.++||||+.++.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls-g~~~~i~~~~ftTl~p~~G~V~~~~----------------~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSE----------------EERFTLADIPGIIEGA 219 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC-SSCCEECCCTTCSSCCEEEEEECSS----------------SCEEEEEECCCCCCCG
T ss_pred CCEEEEECCCCCcHHHHHHHHH-cCCccccCcccceecceeeEEEecC----------------cceEEEEeccccccch
Confidence 3579999999999999999999 4456788999999999999987764 2468999999998877
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
+...+++..|+.+++.+|++++|+|++ + +|..++....++ +
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls-~----------~~~~~ls~g~~e------------l---------------- 260 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAA-D----------EPLKTLETLRKE------------V---------------- 260 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETT-S----------CHHHHHHHHHHH------------H----------------
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCc-c----------CCHHHHHHHHHH------------H----------------
Confidence 766667778888899999999999984 1 122222111110 0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.. . ...+..+|.++++|+.| ... ....+.+.+...+.+.+++
T Consensus 261 -------~~----l----------------------a~aL~~~P~ILVlNKlD--l~~---~~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 261 -------GA----Y----------------------DPALLRRPSLVALNKVD--LLE---EEAVKALADALAREGLAVL 302 (416)
T ss_dssp -------HH----H----------------------CHHHHHSCEEEEEECCT--TSC---HHHHHHHHHHHHTTTSCEE
T ss_pred -------HH----H----------------------hHHhhcCCEEEEEECCC--hhh---HHHHHHHHHHHHhcCCeEE
Confidence 00 0 00125789999999985 321 2334555565555677899
Q ss_pred EechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHHHhHhCCeE-------Eec--------CCCCCeeeEEecCCC
Q 012870 296 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT-------YFT--------SGEKETKAWTIRAGM 360 (454)
Q Consensus 296 ~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~~~~L~li~-------ffT--------~g~~e~raw~i~~Gs 360 (454)
++||+...++.+| ...+.+.+.-.. +|. ...++...|.+ .|.
T Consensus 303 ~iSA~~g~gi~eL----------------------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v-~g~ 359 (416)
T 1udx_A 303 PVSALTGAGLPAL----------------------KEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEV-RAP 359 (416)
T ss_dssp ECCTTTCTTHHHH----------------------HHHHHHHHHTSCCCCCCCCCC----CCCCEEEEEETTEEEE-ECH
T ss_pred EEECCCccCHHHH----------------------HHHHHHHHHhcccccccccccccccCCCcEEEEcCCCeEEE-eCh
Confidence 9999887655333 222222221111 122 11111112333 588
Q ss_pred CHHHHhhhhchhhhhCceEEEEeehhhHhh-cCCHHHHHHcCCeeecccccccceee
Q 012870 361 TAPQAAGVIHSDFEKGFIRAETVAYDDFVA-AGSLAAAREKGLVSWLHYHEHLASYK 416 (454)
Q Consensus 361 ta~~aAg~IHsD~~kgFi~AeV~~~~d~~~-~g~~~~~k~~gk~r~eg~~~~~~~~~ 416 (454)
.+.+++..++-|-.+.+.+ +.+..+ .|=+.+.|++| ++ +|-.+...++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~gv~~~l~~~g-~~-~gd~v~i~~~~ 409 (416)
T 1udx_A 360 EVERYLARIKGDLMEAAGY-----LQEVFRRQGVEAALRAKG-VR-AGDLVRIGGLE 409 (416)
T ss_dssp HHHHHHTTEEECTGGGHHH-----HHHHHHHTTHHHHHHTTT-CC-TTCEEEETTEE
T ss_pred HHHHHHHhcCCCCHHHHHH-----HHHHHHHCCHHHHHHHcC-CC-CCCEEEEecEE
Confidence 9999999999888888733 556666 67788899999 44 66666666554
No 13
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.69 E-value=2.1e-17 Score=174.30 Aligned_cols=150 Identities=27% Similarity=0.330 Sum_probs=111.4
Q ss_pred cccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 52 ~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
..+..++|+|+|.||||||||+|+|++...+.++++|+||+++..+.+.+++ ..+.+|||||+
T Consensus 239 ~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-----------------~~~~l~DTaG~ 301 (482)
T 1xzp_A 239 LLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-----------------ILFRIVDTAGV 301 (482)
T ss_dssp HHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-----------------EEEEEEESSCC
T ss_pred hccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-----------------eEEEEEECCCc
Confidence 3345689999999999999999999987778899999999999999988763 56999999999
Q ss_pred c-CCCCcccccc-cccccchhccceEEEEEeccCC--------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 132 V-KGASQGEGLG-NKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 132 ~-~~~~~~~~l~-~~fl~~ir~aD~il~VvD~~~~--------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
. ......+.++ ..++..++.||++++|+|+++. .+++.+.||.|...... .+.+
T Consensus 302 ~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~----------~~~~ 371 (482)
T 1xzp_A 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN----------EEEI 371 (482)
T ss_dssp CSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC----------HHHH
T ss_pred cccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC----------HHHH
Confidence 7 6555444444 3457789999999999998763 24577778888543211 1111
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+. .....+...+||+++.|++++++.+.+.+.
T Consensus 372 ~~~---~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 372 KNK---LGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHH---HTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHH---hcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 111 111112234899999999999999888654
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=6.5e-17 Score=168.53 Aligned_cols=145 Identities=28% Similarity=0.288 Sum_probs=92.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+|||.||||||||||+|+++..+.++++|++|++...+.+.+.+ .++.+|||||+.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-----------------KTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-----------------EEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-----------------eEEEEEECCCcccccc
Confidence 58999999999999999999987777899999999999999988864 4699999999975432
Q ss_pred c--ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 137 Q--GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 137 ~--~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
. .+.+..+....+++||++++|+|+.+. .+++.+.|+.|..+.. ..+ +.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~---~~~--------~~-- 131 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF---ERE--------VK-- 131 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH---HHH--------TH--
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc---HHH--------HH--
Confidence 1 122344556778999999999998652 3456677777743210 000 00
Q ss_pred HHHHHhcc-cCCCccccchHHHHHHHHHHHHhhh
Q 012870 199 MEKLKKGK-AKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 199 ~~~~~~~~-~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+..+-.. ...++||++|.|+.+|++.+.+.++
T Consensus 132 ~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 132 PELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp HHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 01111111 1234899999999999999988776
No 15
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.65 E-value=3e-16 Score=153.57 Aligned_cols=166 Identities=18% Similarity=0.222 Sum_probs=110.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|+|. ...++++|++|.++..+.+..++ ..+.+|||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~-~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT-CEEEEECTTSSSEEEEEEEECSS-----------------CEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC-CcccCCCCCeeEEEEEEEEEeCC-----------------CceEEEECcCCCccc
Confidence 479999999999999999999955 47899999999999999887764 468999999997654
Q ss_pred Ccc--cccccccc---cchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 136 SQG--EGLGNKFL---SHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 136 ~~~--~~l~~~fl---~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
+.. ..+.+.+. ...+.+|++++|+|+++ +.+++.+.|+.|....- -...+.+.+.
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~------~~~~~~~~l~ 138 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQ------NIRIEIDALS 138 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHT------TEEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhh------hHHHHHHHHH
Confidence 211 01111211 12368999999999876 33566777777643110 0011222222
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHH
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQ 251 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~ 251 (454)
+.+ . .+..++||++|.|+.++++.+.+.++..... ...+.++-.+.+..
T Consensus 139 ~~l---g--~~~i~~SA~~g~gi~el~~~i~~~~~~~~~~-~~~~~~~l~~~~~~ 187 (274)
T 3i8s_A 139 ARL---G--CPVIPLVSTRGRGIEALKLAIDRYKANENVE-LVHYAQPLLNEADS 187 (274)
T ss_dssp HHH---T--SCEEECCCGGGHHHHHHHHHHHTCCCCCCCC-CCCCCHHHHHHHHH
T ss_pred Hhc---C--CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-ccCCCHHHHHHHHH
Confidence 221 1 2334589999999999999999988765321 11345554444443
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=2.1e-16 Score=153.34 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=102.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.||||||||||+|+| ....++++|++|.+...+.+.+++ ..+.+|||||+....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g-~~~~v~~~pg~Tv~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN-ANQRVGNWPGVTVEKKTGEFLLGE-----------------HLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT-TSEEEEECTTSSSEEEEEEEEETT-----------------EEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCCccCCCCceEEEEEEEEEECC-----------------eEEEEEeCCCcccccc
Confidence 5899999999999999999995 457899999999999999988764 4699999999976543
Q ss_pred ------cccccccccccchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccHHHHH
Q 012870 137 ------QGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (454)
Q Consensus 137 ------~~~~l~~~fl~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~ 196 (454)
..+.+...++. .+++|++++|+|+++ ..+++.+.|+.|....- -...+.+.+.
T Consensus 64 ~~~~~~~~e~i~~~~~~-~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~------~~~~~~~~l~ 136 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVI-DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHR------GISIDTEKLE 136 (256)
T ss_dssp -----CHHHHHHHHHHH-HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHT------TCEECHHHHH
T ss_pred cccCCCHHHHHHHHHHh-hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcC------CcHHHHHHHH
Confidence 22233334432 168999999999986 23566677777643211 0111222222
Q ss_pred HHHHHHHhcccCCCccccchHHHHHHHHHHHHh
Q 012870 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 197 ~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
+.+ ..+..++||++|.|+.++++.+.+.
T Consensus 137 ~~l-----g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 137 SLL-----GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHH-----CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHc-----CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 222 1233458999999999999999888
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.65 E-value=1.3e-16 Score=167.91 Aligned_cols=152 Identities=21% Similarity=0.260 Sum_probs=85.4
Q ss_pred hccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 50 ~~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
.+..+..++|+|+|.||||||||+|+|++...+.++++|+||+++....+.+++ .++.+||||
T Consensus 227 ~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-----------------~~l~liDT~ 289 (476)
T 3gee_A 227 GRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-----------------TMFRLTDTA 289 (476)
T ss_dssp HHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-----------------EEEEEEC--
T ss_pred hHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECC
Confidence 344556789999999999999999999977778899999999999988887763 569999999
Q ss_pred CccCCCCcccccc-cccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHhHhhhcc
Q 012870 130 GLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 130 Gl~~~~~~~~~l~-~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
|+.+.....+.++ ...+..+++||++++|+|+++.. +++.+.|+.|.......-
T Consensus 290 G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~------- 362 (476)
T 3gee_A 290 GLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL------- 362 (476)
T ss_dssp ------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH-------
T ss_pred CCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh-------
Confidence 9976443322222 44567789999999999998643 456677888855332210
Q ss_pred cHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+ .+... ...+..++||++|.|++++++.+.+.+.
T Consensus 363 -~~----~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 363 -IR----AIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp -HH----HHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred -HH----HHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 00 11111 0122345899999999999999999887
No 18
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.64 E-value=2.5e-16 Score=147.26 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=104.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|++.. .+.+++.|++|.+.....+...+ +..+.+|||||+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGY 91 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCc
Confidence 45899999999999999999999765 46889999999887766554221 24699999999865
Q ss_pred CCCcc------cccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhccc
Q 012870 134 GASQG------EGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 134 ~~~~~------~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
..... ..+...++.....+|++++|+|+.+. .+++.+.|+.|........ . .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~-~-----~ 165 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESI-N-----A 165 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHH-H-----H
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHH-H-----H
Confidence 32211 12333455555668999999998752 2466777888765432211 0 0
Q ss_pred HHHHHHHHHHHH-----hcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 192 LDQIEKRMEKLK-----KGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 192 ~~~l~~~~~~~~-----~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.+.+.+.+.... ...+..++||+++.|+.++++.+.+.++..
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 166 LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 111222222221 111223489999999999999999988753
No 19
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.63 E-value=1.9e-16 Score=143.35 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=72.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+|+|.||||||||+|+|++...+.++++|++|++...+.+.+++ .++.+|||||+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-----------------MPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-----------------EEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-----------------eEEEEEECCCcccc
Confidence 3479999999999999999999976666788999999999888887763 45899999999654
Q ss_pred CCccccc-ccccccchhccceEEEEEeccCCc
Q 012870 135 ASQGEGL-GNKFLSHIREVDSILQVVRCFEDN 165 (454)
Q Consensus 135 ~~~~~~l-~~~fl~~ir~aD~il~VvD~~~~~ 165 (454)
...-+.. ....+..++++|++++|+|+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~ 97 (172)
T 2gj8_A 66 SDEVERIGIERAWQEIEQADRVLFMVDGTTTD 97 (172)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTTCC
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEECCCCC
Confidence 3221111 122345688999999999997643
No 20
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.62 E-value=9.3e-16 Score=150.26 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=100.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||||+|+| ....++++|++|.++..+.+.. + .++.+|||||+....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g-~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG-HNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC-CCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHC-CCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCccC
Confidence 47999999999999999999995 4567899999999988887643 2 359999999997543
Q ss_pred C--cccccccccccchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 136 S--QGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 136 ~--~~~~l~~~fl~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
+ ..+.+...++.. ..+|++++|+|+++ +.+++.+.|+.|..... -...+...+.+.+
T Consensus 64 ~~~~~e~v~~~~~~~-~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~------~~~~~~~~l~~~l 136 (272)
T 3b1v_A 64 PYSPEAKVARDYLLS-QRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQ------GKKINVDKLSYHL 136 (272)
T ss_dssp CSSHHHHHHHHHHHT-TCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHT------TCCCCHHHHHHHH
T ss_pred CCChHHHHHHHHHhc-CCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcC------CcHHHHHHHHHHc
Confidence 2 122333444432 46999999999876 23456666666532110 0011222222221
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
. .+..++||++|.|+.++++.+.+.+..
T Consensus 137 ---g--~~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 137 ---G--VPVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp ---T--SCEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred ---C--CCEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 1 233458999999999999999887754
No 21
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.62 E-value=1.6e-15 Score=146.11 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=96.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCC-cccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p-~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+|||.||||||||+|+|+|.....++..+ ++|..+..+.+...+ .++.+|||||+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~ 82 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-----------------CHVEVVDTPDIFS 82 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-----------------EEEEEEECCSCSS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-----------------cEEEEEECCCCCC
Confidence 4589999999999999999999976665544433 488888888877663 5699999999975
Q ss_pred CCCcc-cccccccccc----hhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhh
Q 012870 134 GASQG-EGLGNKFLSH----IREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLEL 187 (454)
Q Consensus 134 ~~~~~-~~l~~~fl~~----ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el 187 (454)
..... +.+....... .+.+|++|+|+|+... .+++.+.|+.|.... .+.+.+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~l 160 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYV 160 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC--CHHHHH
Confidence 44321 2222222222 3899999999998641 134556666664321 111111
Q ss_pred hcccHHHHHHHHHHHHhcccCCC---ccccchHHHHHHHHHHHHhhhC-CCCCCC
Q 012870 188 VFSDLDQIEKRMEKLKKGKAKDS---QSKLKEDAEKAALEKIQQALMD-GKPARS 238 (454)
Q Consensus 188 ~l~d~~~l~~~~~~~~~~~~~~~---vSak~~~~~~~ll~~i~~~L~~-~~~~~~ 238 (454)
...+.+.+...++.......... .++..+.++.+|++.|.+.+++ +...|+
T Consensus 161 ~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~ 215 (247)
T 3lxw_A 161 SNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYS 215 (247)
T ss_dssp HHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11111122232322221111111 2344578999999999999985 444443
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.62 E-value=1e-15 Score=148.63 Aligned_cols=167 Identities=19% Similarity=0.302 Sum_probs=109.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|+| ....++++|++|.+...+.+...+ ..+.+|||||+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g-~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG-TKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT-TCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC-CCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCccC
Confidence 47999999999999999999995 456689999999999888887653 569999999997544
Q ss_pred Cc--ccccccccccchhccceEEEEEeccCC--------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 136 ~~--~~~l~~~fl~~ir~aD~il~VvD~~~~--------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
+. .+.+...|+.. ..+|++++|+|+++. .+++.+.|+.|....- .+ ..+...+.+.+
T Consensus 67 ~~~~~e~v~~~~~~~-~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~-----~i-~~~~~~l~~~l 139 (258)
T 3a1s_A 67 YSSIDEKIARDYLLK-GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKT-----GM-KIDRYELQKHL 139 (258)
T ss_dssp SSSHHHHHHHHHHHH-SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHT-----TC-CBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh-cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCcc-----ch-HHHHHHHHHHc
Confidence 32 22233444432 579999999998862 3456666776632110 01 11222222221
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCC--CCCCCCCHHHHHHHHHH
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP--ARSVTLNDFERDSIKQL 252 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~--~~~~~lt~ee~e~lr~~ 252 (454)
. .+..++||++|.|+.++++.+.+.+..... .....++++-.+.+..+
T Consensus 140 ---g--~~vi~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~~~~~~~i~~~ 189 (258)
T 3a1s_A 140 ---G--IPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMILDYGEKVESEIKKV 189 (258)
T ss_dssp ---C--SCEEECCTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCCHHHHHHHHHH
T ss_pred ---C--CCEEEEEeeCCcCHHHHHHHHHHHhhccccCCCcccCCchhHHHHHHHH
Confidence 1 233458999999999999999888764321 11124565544444433
No 23
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=2.8e-16 Score=163.57 Aligned_cols=145 Identities=20% Similarity=0.190 Sum_probs=87.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+|||.||||||||+|+|+|...+.+++.|++|++...+.+.+.+ .++.+|||||+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS-----------------SCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC-----------------ceEEEEECCCCCCcch
Confidence 68999999999999999999988778899999999999888877653 4699999999964322
Q ss_pred c-ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 137 ~-~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
. .+.+..+....+++||++++|+|+.+. .+++.+.|+.|....... . .+. .
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~----~--~~~------~ 134 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN----I--YDF------Y 134 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C----C--CSS------G
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh----H--HHH------H
Confidence 1 122334456678999999999998762 346677788775432110 0 000 0
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+ ......++||++|.|+.+|++.+.+.+++
T Consensus 135 -~l-g~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 135 -SL-GFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp -GG-SSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred -Hc-CCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 00 00112348999999999999999988864
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.6e-14 Score=129.59 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=96.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.........|.++.+.....+.+++. ...+.+|||||....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV---------------KVKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE---------------EEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcHHH
Confidence 45899999999999999999999765544455666666655555555432 246899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++++|++++|+|+++.. .+.. +.
T Consensus 74 ~~-------~~~~~~~~~d~ii~v~d~~~~~----------------s~~~---------~~------------------ 103 (180)
T 2g6b_A 74 RS-------VTHAYYRDAHALLLLYDVTNKA----------------SFDN---------IQ------------------ 103 (180)
T ss_dssp ------------CCGGGCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred HH-------HHHHHccCCCEEEEEEECCCHH----------------HHHH---------HH------------------
Confidence 22 2344567899999999975311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.. . .....|+++++||.| +.+. .....++.++++...+.++
T Consensus 104 ------~~~~~i~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 150 (180)
T 2g6b_A 104 ------AWLTEIHE-----------------------Y-AQHDVALMLLGNKVD--SAHE-RVVKREDGEKLAKEYGLPF 150 (180)
T ss_dssp ------HHHHHHHH-----------------------H-SCTTCEEEEEEECCS--TTSC-CCSCHHHHHHHHHHHTCCE
T ss_pred ------HHHHHHHH-----------------------h-CCCCCcEEEEEECcc--cCcc-cccCHHHHHHHHHHcCCeE
Confidence 01111100 0 014679999999985 4332 1334567777777778899
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
+++||+...++
T Consensus 151 ~~~Sa~~~~gi 161 (180)
T 2g6b_A 151 METSAKTGLNV 161 (180)
T ss_dssp EECCTTTCTTH
T ss_pred EEEeCCCCCCH
Confidence 99999977555
No 25
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.60 E-value=1.7e-15 Score=133.34 Aligned_cols=144 Identities=26% Similarity=0.291 Sum_probs=93.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|+|++.....+++.|++|.++....+..++ ..+.+|||||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~ 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-----------------GRFLLVDTGGLWSGDK 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-----------------EEEEEEECGGGCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-----------------ceEEEEECCCCCCccc
Confidence 68999999999999999999977666678899999988888777653 4689999999976443
Q ss_pred cccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~ 200 (454)
....+...+...++.+|++++|+|+++. .+++.+.|+.|...+- .+.. . +.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~--------~-~~ 131 (161)
T 2dyk_A 65 WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE----LYLG--------P-LY 131 (161)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG----GGCG--------G-GG
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch----HhHH--------H-HH
Confidence 2222333445567899999999998762 3466777888865331 1110 0 00
Q ss_pred HHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 201 ~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.. ...+..++||+++.|+.++++.+.+.+|
T Consensus 132 ~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 132 GL-GFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp GG-SSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred hC-CCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 00 0012234899999999999999887664
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.60 E-value=1.4e-14 Score=128.31 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=94.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++.. .++.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED-KFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC-CCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC-CCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhh
Confidence 479999999999999999999954 4445566767766666666655422 468999999975432
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....++.+|++++|+|+++.. .+.. +.
T Consensus 67 ~-------~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------- 95 (170)
T 1g16_A 67 T-------ITTAYYRGAMGIILVYDITDER----------------TFTN---------IK------------------- 95 (170)
T ss_dssp C-------CCHHHHTTEEEEEEEEETTCHH----------------HHHT---------HH-------------------
T ss_pred h-------hHHHHhccCCEEEEEEECCCHH----------------HHHH---------HH-------------------
Confidence 2 2344567899999999974311 1000 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
..+..+... .....|+++++||.| +.+. ....++.++++.+.+.+++
T Consensus 96 -----~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 96 -----QWFKTVNEH------------------------ANDEAQLLLVGNKSD--METR--VVTADQGEALAKELGIPFI 142 (170)
T ss_dssp -----HHHHHHHHH------------------------SCTTCEEEEEEECTT--CTTC--CSCHHHHHHHHHHHTCCEE
T ss_pred -----HHHHHHHHh------------------------cCCCCcEEEEEECcc--CCcC--ccCHHHHHHHHHHcCCeEE
Confidence 001111000 013679999999985 3322 4456677778877788999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
++||+...++
T Consensus 143 ~~Sa~~~~gv 152 (170)
T 1g16_A 143 ESSAKNDDNV 152 (170)
T ss_dssp ECBTTTTBSH
T ss_pred EEECCCCCCH
Confidence 9999986555
No 27
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.59 E-value=2e-15 Score=135.18 Aligned_cols=146 Identities=23% Similarity=0.316 Sum_probs=91.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
..+|+++|.||||||||+|+|+| ....++++|++|+++..+.+.+++ .++.+|||||+.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG-ENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC-CSSSCC-----CCCCCEEEEEETT-----------------EEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhC-CCeeccCCCCcceeeeEEEEEECC-----------------cEEEEEECCCcccCC
Confidence 36899999999999999999994 456678899999998888877653 469999999997643
Q ss_pred Cc--ccccccccccchhccceEEEEEeccCC--------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 136 ~~--~~~l~~~fl~~ir~aD~il~VvD~~~~--------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
.. .+.+...++. ..++|++++|+|+++. .+++.+.|+.|...... .. ...+.+.+.
T Consensus 65 ~~~~~~~~~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----~~-~~~~~~~~~- 136 (165)
T 2wji_A 65 ANSIDEIIARDYII-NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IE-IDVDKLEKI- 136 (165)
T ss_dssp SSSHHHHHHHHHHH-HHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTT-----CC-CCHHHHHHH-
T ss_pred CcchhHHHHHHHHh-cCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccC-----hh-hHHHHHHHH-
Confidence 21 1122223322 1379999999998652 23455666655321100 00 011111111
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.. .+..++||++|.|+.++++.+.+.+.
T Consensus 137 --~~--~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 137 --LG--VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp --HT--SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred --hC--CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 11 12345899999999999998877653
No 28
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.59 E-value=7.6e-15 Score=141.43 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=105.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCc-ccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~-tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+|+|.||||||||+|+|+|...+..+..|. +|++...+.+...+ .++.||||||+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-----------------REIVIIDTPDMFS 83 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-----------------EEEEEEECCGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-----------------CEEEEEECcCCCC
Confidence 45899999999999999999999776677776777 88888877776653 5699999999986
Q ss_pred CCCccccc----ccccccchhccceEEEEEeccCC--------------------cceEEecC-ccCCCChhHHHhHhhh
Q 012870 134 GASQGEGL----GNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNG-KVDPKSDVDVINLELV 188 (454)
Q Consensus 134 ~~~~~~~l----~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~-~~dp~~di~~l~~el~ 188 (454)
.....+.+ ...+...++.+|++++|+|+..- .+.+.+.+ +.|...+ . +...+.
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~-~~~~i~ 161 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-S-LMDYMH 161 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-C-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-c-HHHHHH
Confidence 55432221 22333467889999999998641 12223333 6664321 0 111010
Q ss_pred cccHHHHHHHHHHHHhcc---cCCCccccchHHHHHHHHHHHHhhhCCC-CCC
Q 012870 189 FSDLDQIEKRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGK-PAR 237 (454)
Q Consensus 189 l~d~~~l~~~~~~~~~~~---~~~~vSak~~~~~~~ll~~i~~~L~~~~-~~~ 237 (454)
....+.+......+.... ...++||+++.|+.++++.+.+.++... +++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~ 214 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY 214 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence 001111222233333221 1146899999999999999999998765 444
No 29
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=9.6e-15 Score=135.07 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=100.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.||||||||+|+|++. .......|.+|.+.....+.+++.. ..+.+|||||...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED-KFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC-CCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC-CCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHH
Confidence 34689999999999999999999954 4455666777777766666665422 4699999999753
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
.. ......++.+|++++|+|+++.. .+.. +.
T Consensus 82 ~~-------~~~~~~~~~~d~ii~v~d~~~~~----------------s~~~---------~~----------------- 112 (213)
T 3cph_A 82 FR-------TITTAYYRGAMGIILVYDVTDER----------------TFTN---------IK----------------- 112 (213)
T ss_dssp GT-------CCCHHHHTTCSEEEEEEETTCHH----------------HHHT---------HH-----------------
T ss_pred HH-------HHHHHHhccCCEEEEEEECCCHH----------------HHHH---------HH-----------------
Confidence 32 22344577899999999974311 1000 00
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
..++.+... .....|+++|+||.| +.+. ....++.++++...+.+
T Consensus 113 -------~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 113 -------QWFKTVNEH------------------------ANDEAQLLLVGNKSD--METR--VVTADQGEALAKELGIP 157 (213)
T ss_dssp -------HHHHHHHHH------------------------TTTCSEEEEEEECTT--CSSC--CSCHHHHHHHHHHHTCC
T ss_pred -------HHHHHHHHh------------------------cCCCCCEEEEEECCC--Cccc--ccCHHHHHHHHHHcCCE
Confidence 001111000 013679999999985 3322 44556777777777889
Q ss_pred EEEechhhhHHhc
Q 012870 294 RVTISAQVEAELT 306 (454)
Q Consensus 294 ~v~iSA~~E~~l~ 306 (454)
++++||+...++.
T Consensus 158 ~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 158 FIESSAKNDDNVN 170 (213)
T ss_dssp EEECBTTTTBSSH
T ss_pred EEEEeCCCCCCHH
Confidence 9999999876663
No 30
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.59 E-value=3e-16 Score=164.67 Aligned_cols=153 Identities=21% Similarity=0.241 Sum_probs=101.2
Q ss_pred ccccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 51 ~~~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
+..+..++|+|+|.||||||||+|+|++...+.+++.|+||++.....+.+++ ..+.+|||||
T Consensus 219 ~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~v~liDT~G 281 (462)
T 3geh_A 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-----------------IPVQVLDTAG 281 (462)
T ss_dssp HHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-----------------EEEEECC---
T ss_pred hhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-----------------EEEEEEECCc
Confidence 34456789999999999999999999987778899999999999888877763 5699999999
Q ss_pred ccCCCCccccc-ccccccchhccceEEEEEeccCC--------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 131 LVKGASQGEGL-GNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 131 l~~~~~~~~~l-~~~fl~~ir~aD~il~VvD~~~~--------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
+.+.....+.+ ..+.+..++.+|++++|+|+++. .+++.+.|+.|.......- ++. .
T Consensus 282 ~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~--~~~--~---- 353 (462)
T 3geh_A 282 IRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT--SLE--Y---- 353 (462)
T ss_dssp -----------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST--TCC--C----
T ss_pred cccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH--HHH--H----
Confidence 96544332222 24456778899999999998763 3567778888865332110 000 0
Q ss_pred HHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
+....+...+||+++.|++++++.+.+.+....
T Consensus 354 ------~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 354 ------PENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp ------CTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred ------hccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 001112234899999999999999999887543
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.59 E-value=2.7e-14 Score=126.78 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=94.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++. ...+.+|||||....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 68 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGK---------------RVNLAIWDTAGQERF 68 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSC---------------EEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCE---------------EEEEEEEECCCcHhh
Confidence 35799999999999999999999543 44445565555555555555432 246899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. + ....++++|++++|+|+++.. .+.. +..
T Consensus 69 ~~----~---~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~~----------------- 99 (170)
T 1z08_A 69 HA----L---GPIYYRDSNGAILVYDITDED----------------SFQK---------VKN----------------- 99 (170)
T ss_dssp -----------CCSSTTCSEEEEEEETTCHH----------------HHHH---------HHH-----------------
T ss_pred hh----h---HHHHhccCCEEEEEEECcCHH----------------HHHH---------HHH-----------------
Confidence 22 1 223467899999999974311 1100 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.++.+... .....|+++++||.| ..+. .....+++++++...+.++
T Consensus 100 -------~~~~~~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 145 (170)
T 1z08_A 100 -------WVKELRKM------------------------LGNEICLCIVGNKID--LEKE-RHVSIQEAESYAESVGAKH 145 (170)
T ss_dssp -------HHHHHHHH------------------------HGGGSEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEE
T ss_pred -------HHHHHHHh------------------------cCCCCeEEEEEECcc--cccc-cccCHHHHHHHHHHcCCeE
Confidence 01111000 114689999999985 3322 1345677888888888999
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
+++||+...++
T Consensus 146 ~~~Sa~~~~gi 156 (170)
T 1z08_A 146 YHTSAKQNKGI 156 (170)
T ss_dssp EEEBTTTTBSH
T ss_pred EEecCCCCCCH
Confidence 99999876555
No 32
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.58 E-value=2.5e-14 Score=129.13 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=98.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. ...+++.+|.+.....+.+++. ...+.+|||||....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCc---------------EEEEEEEECCCcHHH
Confidence 35799999999999999999999654 3455666776666666655532 235889999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. + ....++.+|++++|+|+.+.. .+..+ .
T Consensus 66 ~~----~---~~~~~~~~~~~i~v~d~~~~~-------------s~~~~------------~------------------ 95 (189)
T 4dsu_A 66 SA----M---RDQYMRTGEGFLCVFAINNTK-------------SFEDI------------H------------------ 95 (189)
T ss_dssp CT----T---HHHHHHHCSEEEEEEETTCHH-------------HHHHH------------H------------------
T ss_pred HH----H---HHHHHhcCCEEEEEEECCCHH-------------HHHHH------------H------------------
Confidence 32 1 223467899999999974311 00000 0
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..+..+.. +......|+++++||.| ..+. ....+.++.++...+.++
T Consensus 96 ------~~~~~~~~-----------------------~~~~~~~p~i~v~nK~D--l~~~--~~~~~~~~~~~~~~~~~~ 142 (189)
T 4dsu_A 96 ------HYREQIKR-----------------------VKDSEDVPMVLVGNKCD--LPSR--TVDTKQAQDLARSYGIPF 142 (189)
T ss_dssp ------HHHHHHHH-----------------------HTTCSCCCEEEEEECTT--SSSC--SSCHHHHHHHHHHHTCCE
T ss_pred ------HHHHHHHH-----------------------hcCCCCCcEEEEEECcc--Cccc--ccCHHHHHHHHHHcCCeE
Confidence 01111111 11124689999999985 4332 455677778888788999
Q ss_pred EEechhhhHHhcC
Q 012870 295 VTISAQVEAELTE 307 (454)
Q Consensus 295 v~iSA~~E~~l~~ 307 (454)
+++||+.+.++.+
T Consensus 143 ~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 143 IETSAKTRQGVDD 155 (189)
T ss_dssp EECCTTTCTTHHH
T ss_pred EEEeCCCCCCHHH
Confidence 9999998766643
No 33
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.58 E-value=2.3e-14 Score=126.87 Aligned_cols=150 Identities=19% Similarity=0.143 Sum_probs=82.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|++.......+.+++|... .+.+.+. ...+.+|||||.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGE---------------EASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTE---------------EEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCE---------------EEEEEEEECCCCccch
Confidence 479999999999999999999977666777777777642 2233321 2468999999986433
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. +. ...++.+|++++|+|+++.. .+.. +..
T Consensus 64 ~----~~---~~~~~~~~~~i~v~d~~~~~----------------s~~~---------~~~------------------ 93 (166)
T 3q72_A 64 W----LP---GHCMAMGDAYVIVYSVTDKG----------------SFEK---------ASE------------------ 93 (166)
T ss_dssp ----------------CCEEEEEEETTCHH----------------HHHH---------HHH------------------
T ss_pred h----hh---hhhhhhCCEEEEEEECCCHH----------------HHHH---------HHH------------------
Confidence 2 11 22357899999999974311 1100 000
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.+..+.. .......|+++++||.| +.+. .....++.+.++...+.+++
T Consensus 94 ------~~~~~~~-----------------------~~~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 141 (166)
T 3q72_A 94 ------LRVQLRR-----------------------ARQTDDVPIILVGNKSD--LVRS-REVSVDEGRACAVVFDCKFI 141 (166)
T ss_dssp ------HHHHHHH-----------------------CC---CCCEEEEEECTT--CCSS-CCSCHHHHHHHHHHTTCEEE
T ss_pred ------HHHHHHH-----------------------hcCCCCCCEEEEEeccc--cccc-cccCHHHHHHHHHHhCCcEE
Confidence 0111100 00114679999999985 4332 24455667777777889999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
++||+...++
T Consensus 142 ~~Sa~~~~gi 151 (166)
T 3q72_A 142 ETSAALHHNV 151 (166)
T ss_dssp ECBGGGTBSH
T ss_pred EeccCCCCCH
Confidence 9999987555
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.58 E-value=3.2e-14 Score=127.35 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++ ........|++|.+.....+.+++.. ..+.+|||||....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 71 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD-NTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQERF 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS-CC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHhc-CCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchhh
Confidence 458999999999999999999994 44456677888877777777665422 46899999996433
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++. ..... +.
T Consensus 72 ~~-------~~~~~~~~~d~~i~v~d~~~~----------------~s~~~---------~~------------------ 101 (181)
T 3tw8_B 72 RT-------ITSTYYRGTHGVIVVYDVTSA----------------ESFVN---------VK------------------ 101 (181)
T ss_dssp SS-------CCGGGGTTCSEEEEEEETTCH----------------HHHHH---------HH------------------
T ss_pred hh-------hHHHHhccCCEEEEEEECCCH----------------HHHHH---------HH------------------
Confidence 22 233456789999999997431 11000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..+..+.. .....|+++|+||.| ..+. +....++...++...+.++
T Consensus 102 ------~~~~~~~~-------------------------~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 147 (181)
T 3tw8_B 102 ------RWLHEINQ-------------------------NCDDVCRILVGNKND--DPER-KVVETEDAYKFAGQMGIQL 147 (181)
T ss_dssp ------HHHHHHHH-------------------------HCTTSEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCCE
T ss_pred ------HHHHHHHH-------------------------hCCCCCEEEEEECCC--Cchh-cccCHHHHHHHHHHcCCeE
Confidence 00111100 113679999999985 3322 1334566777777778899
Q ss_pred EEechhhhHHhcC
Q 012870 295 VTISAQVEAELTE 307 (454)
Q Consensus 295 v~iSA~~E~~l~~ 307 (454)
+++||+...++.+
T Consensus 148 ~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 148 FETSAKENVNVEE 160 (181)
T ss_dssp EECBTTTTBSHHH
T ss_pred EEEECCCCCCHHH
Confidence 9999998766633
No 35
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.58 E-value=2.5e-14 Score=128.82 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=97.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++. ..+.++.|+.+.....+.+++. ...+.+|||||.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQ---------------EYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCE---------------EEEEEEEeCCCchhhh
Confidence 5799999999999999999999544 3445555655555555555432 1458999999986543
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. + ....++.+|++++|+|+++... +..+ ..
T Consensus 69 ~----~---~~~~~~~~~~~i~v~d~~~~~s-------------~~~~------------~~------------------ 98 (181)
T 3t5g_A 69 I----F---PQTYSIDINGYILVYSVTSIKS-------------FEVI------------KV------------------ 98 (181)
T ss_dssp C----C---CGGGTTTCSEEEEEEETTCHHH-------------HHHH------------HH------------------
T ss_pred H----H---HHHHHhcCCEEEEEEECCCHHH-------------HHHH------------HH------------------
Confidence 2 1 2234678999999999743110 1110 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.++.+.+. ......|+++++||.| +.+. .....++++++++..+.+++
T Consensus 99 ------~~~~~~~~-----------------------~~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 99 ------IHGKLLDM-----------------------VGKVQIPIMLVGNKKD--LHME-RVISYEEGKALAESWNAAFL 146 (181)
T ss_dssp ------HHHHHHHH-----------------------C----CCEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCEEE
T ss_pred ------HHHHHHHh-----------------------cCCCCCCEEEEEECcc--chhc-ceecHHHHHHHHHHhCCcEE
Confidence 01111111 1114689999999985 4332 24456778888888899999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
++||+...++
T Consensus 147 ~~Sa~~~~~v 156 (181)
T 3t5g_A 147 ESSAKENQTA 156 (181)
T ss_dssp ECCTTSHHHH
T ss_pred EEecCCCCCH
Confidence 9999987666
No 36
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.58 E-value=2.4e-14 Score=130.18 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=97.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccc---------hhccc-------------
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH---------VLSGL------------- 112 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~---------~l~~~------------- 112 (454)
..++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++.... .+..+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT-FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc-CCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999654 33334444444444444444431100 00000
Q ss_pred ccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccH
Q 012870 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 113 ~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
..+.......+.+|||||...... .....++.+|++++|+|+++.. ....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~----------------s~~~------- 134 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSN----------------TLDR------- 134 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHH----------------HHHH-------
T ss_pred cccCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHH----------------HHHH-------
Confidence 000001115799999999754322 2334567899999999975311 1000
Q ss_pred HHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccC
Q 012870 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA 272 (454)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~ 272 (454)
+. ..+.. +......|+++|+||.| ..
T Consensus 135 --~~------------------------~~~~~--------------------------i~~~~~~piilv~NK~D--~~ 160 (208)
T 3clv_A 135 --AK------------------------TWVNQ--------------------------LKISSNYIIILVANKID--KN 160 (208)
T ss_dssp --HH------------------------HHHHH--------------------------HHHHSCCEEEEEEECTT--CC
T ss_pred --HH------------------------HHHHH--------------------------HHhhCCCcEEEEEECCC--cc
Confidence 00 00000 00112489999999986 22
Q ss_pred CCCCCccHHHHHHHHhhcCCcEEEechhhhHHh
Q 012870 273 DPGSNPHVNEVMNLASDLQSGRVTISAQVEAEL 305 (454)
Q Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~v~iSA~~E~~l 305 (454)
+. ....+++++++.+.+.+++++||+...++
T Consensus 161 ~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 161 KF--QVDILEVQKYAQDNNLLFIQTSAKTGTNI 191 (208)
T ss_dssp -C--CSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred cc--cCCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 22 45678888888888999999999987655
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=1.9e-15 Score=157.26 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=98.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|++||.||||||||+|+|+|.....++++|+||++.....+.+++ .++.+|||||+.+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKK 236 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-----------------EEEEETTHHHHTCB
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-----------------eEEEEEECCCcCcC
Confidence 4589999999999999999999987777899999999999888887764 46999999999654
Q ss_pred CCcccccc----cccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~----~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
....+.+. .+.+..++.||++++|+|+++. .+++.+.|+.|....-... .+.
T Consensus 237 ~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~--------~~~ 308 (436)
T 2hjg_A 237 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDEST--------MKE 308 (436)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTH--------HHH
T ss_pred ccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHH--------HHH
Confidence 43221111 1224567899999999999873 3467778888865321110 011
Q ss_pred HHHHHH-HHHh--cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 195 IEKRME-KLKK--GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 195 l~~~~~-~~~~--~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.+.+. .+.. ..+...+||++|.|+.++++.+.+.+..
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 309 FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 111111 1111 1122348999999999999999888765
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=130.88 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=102.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++ ........|++|.+.....+.+++.. ..+.+|||||....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 78 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERF 78 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH-SCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHc-CCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhh
Confidence 357999999999999999999994 44556667888877777777665422 46899999996433
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++.. .+.. +.
T Consensus 79 ~~-------~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------ 108 (196)
T 3tkl_A 79 RT-------ITSSYYRGAHGIIVVYDVTDQE----------------SFNN---------VK------------------ 108 (196)
T ss_dssp CT-------THHHHHTTCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred hh-------hHHHHHhhCCEEEEEEECcCHH----------------HHHH---------HH------------------
Confidence 22 2334567899999999975311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.. + .....|+++++||.| +.+. +....++.+.++...+.++
T Consensus 109 ------~~~~~i~~-----------------------~-~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 109 ------QWLQEIDR-----------------------Y-ASENVNKLLVGNKCD--LTTK-KVVDYTTAKEFADSLGIPF 155 (196)
T ss_dssp ------HHHHHHHH-----------------------H-SCTTCEEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCCE
T ss_pred ------HHHHHHHH-----------------------h-cCCCCCEEEEEECcc--cccc-cccCHHHHHHHHHHcCCcE
Confidence 00111100 0 013679999999985 4332 2345567778888888999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 156 ~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 156 LETSAKNATNVE 167 (196)
T ss_dssp EEECTTTCTTHH
T ss_pred EEEeCCCCCCHH
Confidence 999999876663
No 39
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.58 E-value=9.7e-15 Score=132.56 Aligned_cols=148 Identities=20% Similarity=0.157 Sum_probs=97.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++......++.+++|.+...... +.++.+|||||+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV--------------------NSKYYFVDLPGYGYA 81 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE--------------------TTTEEEEECCCBSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE--------------------CCcEEEEECCCCccc
Confidence 457999999999999999999998777778888888877655443 235899999997543
Q ss_pred CCc------ccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccH
Q 012870 135 ASQ------GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 135 ~~~------~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
... ...+...++.....+|++++|+|+... .+++.+.|+.|...+-..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---------- 151 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSER---------- 151 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH----------
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHH----------
Confidence 211 111223344445567999999998652 346677788775432111
Q ss_pred HHHHHHHHHHHhc---ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 193 DQIEKRMEKLKKG---KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 193 ~~l~~~~~~~~~~---~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
............. .+..++||+++.|+.++++.+.+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 152 AKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 0111111111111 122348999999999999999888753
No 40
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.57 E-value=3.9e-14 Score=130.76 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=99.9
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
....++|++||.||||||||+|+|++. .......|++|.+.....+.+++.. .++.+|||||..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGL-QGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCE-ECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhc-cCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCc
Confidence 345689999999999999999999843 3334566778877777776665422 468899999984
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcc
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vS 212 (454)
.... .+.. ..++.+|++++|+|+++.. .+.. +..
T Consensus 84 ~~~~---~~~~---~~~~~~d~~ilv~d~~~~~----------------s~~~---------~~~--------------- 117 (195)
T 3cbq_A 84 DAGG---WLRD---HCLQTGDAFLIVFSVTDRR----------------SFSK---------VPE--------------- 117 (195)
T ss_dssp GGGH---HHHH---HHHHHCSEEEEEEETTCHH----------------HHHT---------HHH---------------
T ss_pred cchh---hhHH---HhhccCCEEEEEEECCCHH----------------HHHH---------HHH---------------
Confidence 3211 1111 2357899999999975321 1100 000
Q ss_pred ccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCC
Q 012870 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292 (454)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~ 292 (454)
.+..+.. .......|+++|+||.| +.+. .....++.++++...+.
T Consensus 118 ---------~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~a~~~~~ 162 (195)
T 3cbq_A 118 ---------TLLRLRA-----------------------GRPHHDLPVILVGNKSD--LARS-REVSLEEGRHLAGTLSC 162 (195)
T ss_dssp ---------HHHHHHH-----------------------HSTTSCCCEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTC
T ss_pred ---------HHHHHHH-----------------------hcCCCCCCEEEEeechh--cccc-CCcCHHHHHHHHHHhCC
Confidence 0110100 00113689999999985 4332 13456778888887888
Q ss_pred cEEEechhhhHHh
Q 012870 293 GRVTISAQVEAEL 305 (454)
Q Consensus 293 ~~v~iSA~~E~~l 305 (454)
+++++||+...++
T Consensus 163 ~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 163 KHIETSAALHHNT 175 (195)
T ss_dssp EEEEEBTTTTBSH
T ss_pred EEEEEcCCCCCCH
Confidence 9999999987555
No 41
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.56 E-value=8.3e-14 Score=128.59 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++.. ..+.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 70 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD-TYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERF 70 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC-CCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHH
Confidence 3479999999999999999999954 4445556777777666666665422 36999999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++.. .+.. +..
T Consensus 71 ~~-------~~~~~~~~~d~vilv~d~~~~~----------------s~~~---------~~~----------------- 101 (206)
T 2bcg_Y 71 RT-------ITSSYYRGSHGIIIVYDVTDQE----------------SFNG---------VKM----------------- 101 (206)
T ss_dssp TC-------CCGGGGTTCSEEEEEEETTCHH----------------HHHH---------HHH-----------------
T ss_pred HH-------HHHHhccCCCEEEEEEECcCHH----------------HHHH---------HHH-----------------
Confidence 32 2334567899999999975311 1000 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.++.+.. . .....|+++++||.| +.+. +....++.+.++...+.++
T Consensus 102 -------~~~~i~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 147 (206)
T 2bcg_Y 102 -------WLQEIDR-----------------------Y-ATSTVLKLLVGNKCD--LKDK-RVVEYDVAKEFADANKMPF 147 (206)
T ss_dssp -------HHHHHHH-----------------------H-SCTTCEEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCCE
T ss_pred -------HHHHHHH-----------------------h-cCCCCCEEEEEECCC--Cccc-cccCHHHHHHHHHHcCCeE
Confidence 0111100 0 013679999999985 4332 1345567777887788999
Q ss_pred EEechhhhHHhcC
Q 012870 295 VTISAQVEAELTE 307 (454)
Q Consensus 295 v~iSA~~E~~l~~ 307 (454)
+++||+...++.+
T Consensus 148 ~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 148 LETSALDSTNVED 160 (206)
T ss_dssp EECCTTTCTTHHH
T ss_pred EEEeCCCCCCHHH
Confidence 9999998766633
No 42
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.56 E-value=1.7e-14 Score=130.22 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=78.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+ .........|+++.+.....+.+++. ..++.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~-~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 70 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTE---------------EEEEEEEEC------
T ss_pred CceEEEEECCCCCCHHHHHHHHH-hCCCCCCCCCcccceeEEEEEEECCE---------------EEEEEEEcCCCChhh
Confidence 34799999999999999999999 44444555666666666666655432 146999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++++|++++|+|+++.. .+.. +..
T Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~~-------------s~~~------------~~~----------------- 101 (183)
T 2fu5_C 71 RT-------ITTAYYRGAMGIMLVYDITNEK-------------SFDN------------IRN----------------- 101 (183)
T ss_dssp ----------CCTTTTTCSEEEEEEETTCHH-------------HHHH------------HHH-----------------
T ss_pred hh-------hHHHHHhcCCEEEEEEECcCHH-------------HHHH------------HHH-----------------
Confidence 32 2234467899999999974311 0100 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.+..+... .....|+++++||.| +.+. .....+++++++...+.++
T Consensus 102 -------~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 102 -------WIRNIEEH------------------------ASADVEKMILGNKCD--VNDK-RQVSKERGEKLALDYGIKF 147 (183)
T ss_dssp -------HHHHHHHH------------------------SCTTCEEEEEEEC----CCSC-CCSCHHHHHHHHHHHTCEE
T ss_pred -------HHHHHHHh------------------------cCCCCCEEEEEECcc--CCcc-CcCCHHHHHHHHHHcCCeE
Confidence 01111000 013579999999985 4332 1344677888888788999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 148 ~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 148 METSAKANINVE 159 (183)
T ss_dssp EECCC---CCHH
T ss_pred EEEeCCCCCCHH
Confidence 999999876653
No 43
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=1e-14 Score=151.93 Aligned_cols=153 Identities=26% Similarity=0.277 Sum_probs=98.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|||.||||||||+|+|+|...+.++++|+||+++..+.+.+.+ ..+.+|||||+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-----------------~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-----------------RKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-----------------EEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-----------------EEEEEEECCCCccc
Confidence 4589999999999999999999988778899999999999999988774 45899999998543
Q ss_pred CCcc----cccc-cccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQG----EGLG-NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~----~~l~-~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.... +.+. ...+..++.+|++++|+|+.+. .+++.+.|+.|....-.. ..+
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~--------~~~ 313 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREK--------RYD 313 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGG--------CHH
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhh--------HHH
Confidence 3211 1111 1224567899999999998752 245667788875432110 011
Q ss_pred HHHHHHH-HHHhc--ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 194 QIEKRME-KLKKG--KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 194 ~l~~~~~-~~~~~--~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+.+.+. .+... .+...+||++|.|+.++++.+.+.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 314 EFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1111111 11111 112348999999999999999888865
No 44
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.56 E-value=8.4e-15 Score=133.58 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=85.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|++.. ...+++.|++|.+.....+ + .++.+|||||+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N------------------DELHFVDVPGYGF 81 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T------------------TTEEEEECCCBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C------------------CcEEEEECCCCCc
Confidence 46899999999999999999999665 4667788888877654433 1 3599999999754
Q ss_pred CCCcc---c---ccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhccc
Q 012870 134 GASQG---E---GLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 134 ~~~~~---~---~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
..... + .+...++.....+|++++|+|+++. .+++.+.|+.|....-..- .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-~------ 154 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWD-K------ 154 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH-H------
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHH-H------
Confidence 32211 1 1123333434455999999998762 2456666777754321110 0
Q ss_pred HHHHHHHHHHHHhc--ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 192 LDQIEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 192 ~~~l~~~~~~~~~~--~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
..+...+.+... .+...+||+++.|+.++++.+.+.++
T Consensus 155 --~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 155 --HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp --HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 001111112111 11234899999999999999887764
No 45
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.56 E-value=1e-14 Score=141.97 Aligned_cols=167 Identities=21% Similarity=0.265 Sum_probs=110.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|+|. ...++++|++|.+...+.+...+ ..+.+|||||+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYRE-----------------KEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT-CEEEEECTTSSCEEEEEEEEETT-----------------EEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-CcccCCCCCeEEEeeEEEEEECC-----------------ceEEEEeCCCccccc
Confidence 479999999999999999999955 55899999999999988887764 469999999997543
Q ss_pred Cc--ccccccccccchhccceEEEEEeccC--------------C-cceEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFE--------------D-NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 136 ~~--~~~l~~~fl~~ir~aD~il~VvD~~~--------------~-~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
.. .+.+...|+. ..++|++++|+|+++ . .+++.+.|+.|....- -...+...+.+.
T Consensus 65 ~~~~~~~~~~~~~~-~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------~~~~~~~~l~~~ 137 (271)
T 3k53_A 65 AHSIDELIARNFIL-DGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKK------GAKIDIKKMRKE 137 (271)
T ss_dssp SSCHHHHHHHHHHH-TTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHH------TCCCCHHHHHHH
T ss_pred cCCHHHHHHHHhhh-ccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCccc------ccHHHHHHHHHH
Confidence 32 1112223322 257999999999876 2 4556666666632110 011112222222
Q ss_pred HHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCCC--CCCCCCHHHHHHHHHH
Q 012870 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA--RSVTLNDFERDSIKQL 252 (454)
Q Consensus 199 ~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~~--~~~~lt~ee~e~lr~~ 252 (454)
+ . .+..++||+++.|+.++++.+.+.+...... .+..+.++..+.+..+
T Consensus 138 l---g--~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 138 L---G--VPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp H---S--SCEEECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred c---C--CcEEEEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHH
Confidence 1 1 2334589999999999999999988764321 1224555544444443
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.56 E-value=5e-14 Score=125.84 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++.. ..+.+|||||.....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~ 77 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD-SFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFR 77 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS-CCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHHHH
Confidence 379999999999999999999954 4445556777777776766665422 369999999964322
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
......++++|++++|+|++
T Consensus 78 -------~~~~~~~~~~d~~i~v~d~~ 97 (179)
T 2y8e_A 78 -------SLIPSYIRDSTVAVVVYDIT 97 (179)
T ss_dssp -------GGSHHHHHTCSEEEEEEETT
T ss_pred -------HHHHHHhcCCCEEEEEEECC
Confidence 22334567899999999974
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.56 E-value=4.9e-14 Score=125.13 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=89.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|++. .......+.+|.+.....+.+++.. .++.+|||||.....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGL-QGDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEE---------------EEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhc-cCcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccccc
Confidence 369999999999999999999944 3334444556666666666665422 468899999985432
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
.. +. ...++.+|++++|+|+++... +..+ ..
T Consensus 66 ~~---~~---~~~~~~~d~~i~v~d~~~~~s-------------~~~~------------~~------------------ 96 (169)
T 3q85_A 66 GW---LQ---DHCLQTGDAFLIVFSVTDRRS-------------FSKV------------PE------------------ 96 (169)
T ss_dssp ----------CHHHHHCSEEEEEEETTCHHH-------------HHTH------------HH------------------
T ss_pred hh---hh---hhhhccCCEEEEEEECCChHH-------------HHHH------------HH------------------
Confidence 20 11 123567999999999743210 1000 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.+..+.. .......|+++++||.| +.+. .....++.++++...+.+++
T Consensus 97 ------~~~~~~~-----------------------~~~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 97 ------TLLRLRA-----------------------GRPHHDLPVILVGNKSD--LARS-REVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp ------HHHHHHH-----------------------HSTTSCCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCEEE
T ss_pred ------HHHHHHh-----------------------cccCCCCCEEEEeeCcc--hhhc-ccCCHHHHHHHHHHcCCcEE
Confidence 0111100 00113689999999985 3322 24556777888888899999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
++||+...++
T Consensus 145 ~~Sa~~~~~v 154 (169)
T 3q85_A 145 ETSAALHHNT 154 (169)
T ss_dssp ECBTTTTBSH
T ss_pred EecCccCCCH
Confidence 9999987555
No 48
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.56 E-value=9.5e-14 Score=127.77 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=99.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|++.. ......|.+|.+.....+.+++. ...+.+|||||...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDR---------------LVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCE---------------EEEEEEEeCCCcHH
Confidence 345899999999999999999999554 33445566666666666655532 24699999999744
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
... .....++.+|++++|+|+++... +..+ ..
T Consensus 70 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~~~------------~~---------------- 101 (207)
T 1vg8_A 70 FQS-------LGVAFYRGADCCVLVFDVTAPNT-------------FKTL------------DS---------------- 101 (207)
T ss_dssp GSC-------SCCGGGTTCSEEEEEEETTCHHH-------------HHTH------------HH----------------
T ss_pred HHH-------hHHHHHhCCcEEEEEEECCCHHH-------------HHHH------------HH----------------
Confidence 322 22344678999999999853210 0000 00
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHh-hcCC
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS-DLQS 292 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~-~~~~ 292 (454)
.+..+...... ......|+++++||.| +.+. ....++++.++. ..+.
T Consensus 102 --------~~~~~~~~~~~--------------------~~~~~~piilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~ 149 (207)
T 1vg8_A 102 --------WRDEFLIQASP--------------------RDPENFPFVVLGNKID--LENR--QVATKRAQAWCYSKNNI 149 (207)
T ss_dssp --------HHHHHHHHHCC--------------------SSGGGSCEEEEEECTT--SSCC--CSCHHHHHHHHHHTTSC
T ss_pred --------HHHHHHHhccc--------------------ccCCCCcEEEEEECCC--Cccc--ccCHHHHHHHHHhcCCc
Confidence 01111111100 0114689999999985 4332 445667777776 5578
Q ss_pred cEEEechhhhHHhcC
Q 012870 293 GRVTISAQVEAELTE 307 (454)
Q Consensus 293 ~~v~iSA~~E~~l~~ 307 (454)
+++++||+...++.+
T Consensus 150 ~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 150 PYFETSAKEAINVEQ 164 (207)
T ss_dssp CEEECBTTTTBSHHH
T ss_pred eEEEEeCCCCCCHHH
Confidence 899999998876643
No 49
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.56 E-value=4.6e-14 Score=128.57 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=94.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++... .....|..+.+.....+...+. ...+.+|||||....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 84 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSF-TPAFVSTVGIDFKVKTVYRHDK---------------RIKLQIWDTAGQERY 84 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCCCEEEEEEEEETTE---------------EEEEEEEECCSCCSS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCceeEEEEEEEEEECCe---------------EEEEEEEeCCCcHHH
Confidence 348999999999999999999996543 2333343333333344443322 246899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++.. .+.. +.
T Consensus 85 ~~-------~~~~~~~~~d~ii~v~d~~~~~----------------s~~~---------~~------------------ 114 (189)
T 2gf9_A 85 RT-------ITTAYYRGAMGFLLMYDIANQE----------------SFAA---------VQ------------------ 114 (189)
T ss_dssp CC-------SGGGGGTTCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred hh-------hHHHhccCCCEEEEEEECCCHH----------------HHHH---------HH------------------
Confidence 22 2344567899999999974311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+... .....|+++++||.| +.+. .....+++++++++.+.++
T Consensus 115 ------~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 161 (189)
T 2gf9_A 115 ------DWATQIKTY------------------------SWDNAQVILVGNKCD--LEDE-RVVPAEDGRRLADDLGFEF 161 (189)
T ss_dssp ------HHHHHHHHH------------------------SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEE
T ss_pred ------HHHHHHHHh------------------------cCCCCCEEEEEECcc--cccc-cCCCHHHHHHHHHHcCCeE
Confidence 001111000 013679999999985 3322 1334567788887778999
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
+++||+...++
T Consensus 162 ~~~Sa~~g~gi 172 (189)
T 2gf9_A 162 FEASAKENINV 172 (189)
T ss_dssp EECBTTTTBSH
T ss_pred EEEECCCCCCH
Confidence 99999987655
No 50
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.55 E-value=1.8e-14 Score=129.03 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||||||||+|+|+++. ......|.++.+.....+.+++.. ..++.+|||||....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET-FGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIG 69 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG-TTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc-CCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCccc
Confidence 35899999999999999999999543 323333555556666666665411 246999999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. .....++++|++++|+|+++
T Consensus 70 ~~-------~~~~~~~~~d~~i~v~d~~~ 91 (178)
T 2hxs_A 70 GK-------MLDKYIYGAQGVLLVYDITN 91 (178)
T ss_dssp CT-------THHHHHTTCSEEEEEEETTC
T ss_pred cc-------hhhHHHhhCCEEEEEEECCC
Confidence 32 22334678999999999853
No 51
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=4.2e-15 Score=155.60 Aligned_cols=154 Identities=20% Similarity=0.177 Sum_probs=103.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.||||||||+|+|++.....++++|+||+++....+..++ .++.+|||||+.+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRK 255 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-----------------EEEEETTGGGTTT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-----------------ceEEEEECCCCCc
Confidence 35689999999999999999999987778899999999999988887764 4699999999865
Q ss_pred CCCccc---cc-ccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 134 GASQGE---GL-GNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 134 ~~~~~~---~l-~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.....+ .+ ....+..++.||++++|+|+++. .+++.+.|+.|...+-..- .+
T Consensus 256 ~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~--------~~ 327 (456)
T 4dcu_A 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDEST--------MK 327 (456)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSH--------HH
T ss_pred CcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHH--------HH
Confidence 443211 11 12345678899999999999862 3567788888865321110 11
Q ss_pred HHHHHHHHHHhc---ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 194 QIEKRMEKLKKG---KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 194 ~l~~~~~~~~~~---~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+.+.+...-.. .+...+||++|.|+.++++.+.+.+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 328 EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 112222211111 122348999999999999999888765
No 52
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.55 E-value=2.4e-14 Score=128.27 Aligned_cols=144 Identities=18% Similarity=0.126 Sum_probs=98.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+ +........|++|.+.....+.+++ ..+.+|||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIR-HSKVTEQEAGGITQHIGAYQVTVND-----------------KKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH-TTCSSCSSCCSSSTTCCCCEEEETT-----------------EEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh-CCccccCCCCceeEeeeEEEEEeCC-----------------ceEEEEECCCCHH
Confidence 356899999999999999999999 4556667788888887777666653 4688999999855
Q ss_pred CCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~ 197 (454)
... .....++.+|++++|+|+.+ +.+++.+.|+.|.... +.+.+..
T Consensus 68 ~~~-------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~ 129 (178)
T 2lkc_A 68 FTT-------MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA-----------NPDRVMQ 129 (178)
T ss_dssp SSC-------SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS-----------CHHHHHH
T ss_pred HHH-------HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC-----------CHHHHHH
Confidence 433 12344678999999999876 2346677788775431 0011111
Q ss_pred HHHHHHhc-------ccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 198 RMEKLKKG-------KAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 198 ~~~~~~~~-------~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.+...... .+...+||+++.|+.++++.+.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 130 ELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp HHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 11111111 1123489999999999999988877643
No 53
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.55 E-value=2.3e-14 Score=130.93 Aligned_cols=153 Identities=19% Similarity=0.132 Sum_probs=96.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++. ..++.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVNIDGK---------------QIKLQIWDTAGQESF 83 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSEEEEEEEETTE---------------EEEEEEECCTTGGGT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 34799999999999999999999554 33344455565665556655432 146899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++.. .+.. +.
T Consensus 84 ~~-------~~~~~~~~~d~ii~v~d~~~~~----------------s~~~---------~~------------------ 113 (191)
T 2a5j_A 84 RS-------ITRSYYRGAAGALLVYDITRRE----------------TFNH---------LT------------------ 113 (191)
T ss_dssp SC-------CCHHHHTTCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred hh-------hHHHHhccCCEEEEEEECCCHH----------------HHHH---------HH------------------
Confidence 22 2334567899999999975311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+... .....|+++++||.| +.+. .....++++.++.+.+.++
T Consensus 114 ------~~l~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 160 (191)
T 2a5j_A 114 ------SWLEDARQH------------------------SSSNMVIMLIGNKSD--LESR-RDVKREEGEAFAREHGLIF 160 (191)
T ss_dssp ------HHHHHHHHH------------------------SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEE
T ss_pred ------HHHHHHHHh------------------------cCCCCCEEEEEECcc--cCCc-cccCHHHHHHHHHHcCCEE
Confidence 011111000 013679999999985 3322 1334567778887778999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 161 ~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 161 METSAKTACNVE 172 (191)
T ss_dssp EEECTTTCTTHH
T ss_pred EEEeCCCCCCHH
Confidence 999999876663
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.55 E-value=6.4e-14 Score=123.85 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++. ...+.+|||||....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIQVNDE---------------DVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC-CCCCCSSCCCSSSEEEEEEEETTE---------------EEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC-CCCCCCCCceEEEEEEEEEEECCE---------------EEEEEEEcCCCcHhH
Confidence 4579999999999999999999954 333444555555655555555432 246999999997543
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. .....++.+|++++|+|++
T Consensus 68 ~~-------~~~~~~~~~d~~i~v~d~~ 88 (168)
T 1z2a_A 68 DA-------ITKAYYRGAQACVLVFSTT 88 (168)
T ss_dssp TC-------CCHHHHTTCCEEEEEEETT
T ss_pred HH-------HHHHHhcCCCEEEEEEECc
Confidence 22 2334567899999999974
No 55
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.55 E-value=1.1e-13 Score=123.78 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=96.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.. ...+++.||.+.....+.+++. ...+.+|||||..+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGI---------------PARLDILDTAGQEEF 70 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 34799999999999999999999653 3455666666555555555432 146899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. + ....++.+|++++|+|+++.. .+.. +.
T Consensus 71 ~~----~---~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------ 100 (181)
T 2fn4_A 71 GA----M---REQYMRAGHGFLLVFAINDRQ----------------SFNE---------VG------------------ 100 (181)
T ss_dssp SC----C---HHHHHHHCSEEEEEEETTCHH----------------HHHH---------HH------------------
T ss_pred HH----H---HHHHHhhCCEEEEEEeCCCHH----------------HHHH---------HH------------------
Confidence 22 2 223467899999999974311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..+..+... ......|+++++||.| +.+. .....++.+.++...+.++
T Consensus 101 ------~~~~~~~~~-----------------------~~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 148 (181)
T 2fn4_A 101 ------KLFTQILRV-----------------------KDRDDFPVVLVGNKAD--LESQ-RQVPRSEASAFGASHHVAY 148 (181)
T ss_dssp ------HHHHHHHHH-----------------------HTSSCCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHHh-----------------------cCCCCCCEEEEEECcc--cccc-cccCHHHHHHHHHHcCCeE
Confidence 001111000 0124679999999985 3322 1334566777777778899
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
+++||+...++
T Consensus 149 ~~~Sa~~~~gv 159 (181)
T 2fn4_A 149 FEASAKLRLNV 159 (181)
T ss_dssp EECBTTTTBSH
T ss_pred EEecCCCCCCH
Confidence 99999987655
No 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.54 E-value=7.2e-14 Score=125.01 Aligned_cols=86 Identities=22% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.||||||||+|+|++. .......|.++.+.....+.+++. ...+.+|||||....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 69 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN-KFDTQLFHTIGVEFLNKDLEVDGH---------------FVTMQIWDTAGQERF 69 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS-CCCC----CCSEEEEEEEEEETTE---------------EEEEEEEECCCCGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCceeeeEEEEEEEECCE---------------EEEEEEEeCCCchhh
Confidence 3479999999999999999999954 344445565555555555555432 146999999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.......++.+|++++|+|+.+
T Consensus 70 -------~~~~~~~~~~~~~~i~v~d~~~ 91 (177)
T 1wms_A 70 -------RSLRTPFYRGSDCCLLTFSVDD 91 (177)
T ss_dssp -------HHHHGGGGTTCSEEEEEEETTC
T ss_pred -------hhhHHHHHhcCCEEEEEEECcC
Confidence 2223345678999999999753
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.54 E-value=6.7e-14 Score=129.05 Aligned_cols=153 Identities=21% Similarity=0.162 Sum_probs=93.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.... ..++.++.+.....+.+.+. ...+.+|||||....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKD---------------EFHLHLVDTAGQDEY 85 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC-------------------CEEEEEEEECCCCTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCE---------------EEEEEEEECCCccch
Confidence 4589999999999999999999965433 33334443333344433321 356899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++.. .+.. +..
T Consensus 86 ~~-------~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~~----------------- 116 (201)
T 3oes_A 86 SI-------LPYSFIIGVHGYVLVYSVTSLH----------------SFQV---------IES----------------- 116 (201)
T ss_dssp CC-------CCGGGTTTCCEEEEEEETTCHH----------------HHHH---------HHH-----------------
T ss_pred HH-------HHHHHHhcCCEEEEEEeCCCHH----------------HHHH---------HHH-----------------
Confidence 32 2234467899999999975311 1100 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.++.+.. .......|+++|+||.| +.+. ......+.+.++...+.++
T Consensus 117 -------~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 163 (201)
T 3oes_A 117 -------LYQKLHE-----------------------GHGKTRVPVVLVGNKAD--LSPE-REVQAVEGKKLAESWGATF 163 (201)
T ss_dssp -------HHHHHHC----------------------------CCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEE
T ss_pred -------HHHHHHH-----------------------hcCCCCCCEEEEEECcc--Cccc-cccCHHHHHHHHHHhCCeE
Confidence 1111100 00114689999999985 3322 1344566777787788999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+.+.++.
T Consensus 164 ~~~Sa~~~~~v~ 175 (201)
T 3oes_A 164 MESSARENQLTQ 175 (201)
T ss_dssp EECCTTCHHHHH
T ss_pred EEEeCCCCCCHH
Confidence 999999887663
No 58
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.54 E-value=4.8e-14 Score=127.35 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=99.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++.. ..+.+|||||....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 72 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK-KFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQERF 72 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS-SCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 3489999999999999999999954 3444555666666666666555321 46899999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.......++.+|++++|+|+++.. .... +.
T Consensus 73 -------~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------ 102 (186)
T 2bme_A 73 -------RSVTRSYYRGAAGALLVYDITSRE----------------TYNA---------LT------------------ 102 (186)
T ss_dssp -------HHHHHTTSTTCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred -------HHHHHHHHhcCCEEEEEEECcCHH----------------HHHH---------HH------------------
Confidence 223345578899999999975311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.. . .....|+++++||.| +.+. .....++.++++...+.++
T Consensus 103 ------~~~~~~~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 103 ------NWLTDARM-----------------------L-ASQNIVIILCGNKKD--LDAD-REVTFLEASRFAQENELMF 149 (186)
T ss_dssp ------HHHHHHHH-----------------------H-SCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHH-----------------------h-cCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHcCCEE
Confidence 00111100 0 013679999999985 3322 1344567778888888999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 150 ~~~Sa~~~~gi~ 161 (186)
T 2bme_A 150 LETSALTGENVE 161 (186)
T ss_dssp EECCTTTCTTHH
T ss_pred EEecCCCCCCHH
Confidence 999999876663
No 59
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=3e-15 Score=156.73 Aligned_cols=145 Identities=21% Similarity=0.179 Sum_probs=85.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+|||.||||||||+|+|+|...+.+++.|++|++...+.+...+ ..+.+|||||+....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGD 85 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-----------------SCCEEECCCC-----
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-----------------ceEEEEECCCCCCcc
Confidence 479999999999999999999988878899999999999888876653 469999999986322
Q ss_pred Cc-ccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHH
Q 012870 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (454)
Q Consensus 136 ~~-~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~ 198 (454)
.. .+.+.......+++||++++|+|+.+ ..+++.+.|+.|.........+ .+..
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e---~~~l------ 156 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYD---FYSL------ 156 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CC---SGGG------
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHH---HHHc------
Confidence 21 22333445567889999999999865 2345667777774322111000 0000
Q ss_pred HHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 199 ~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
......++||++|.|+.++++.+.+.++
T Consensus 157 -----g~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 157 -----GFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp -----SSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred -----CCCceEEeecccccchHHHHHHHHhhcc
Confidence 0001123788888888888888877664
No 60
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.54 E-value=3.2e-14 Score=125.35 Aligned_cols=151 Identities=21% Similarity=0.165 Sum_probs=94.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++.. ...++.++.+.....+.+++. ...+.+|||||.....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------EVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCE---------------EEEEEEEECCCcchhH
Confidence 47999999999999999999996542 344555555554444444432 1468999999974322
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
......++.+|++++|+|+++.. .+.. +.
T Consensus 67 -------~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------- 95 (168)
T 1u8z_A 67 -------AIRDNYFRSGEGFLCVFSITEME----------------SFAA---------TA------------------- 95 (168)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTCHH----------------HHHH---------HH-------------------
T ss_pred -------HHHHHHhhcCCEEEEEEECCCHH----------------HHHH---------HH-------------------
Confidence 12234467899999999975311 1100 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
..++.+.+. ......|+++++||.| ..+. .....++++.++...+.+++
T Consensus 96 -----~~~~~i~~~-----------------------~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1u8z_A 96 -----DFREQILRV-----------------------KEDENVPFLLVGNKSD--LEDK-RQVSVEEAKNRADQWNVNYV 144 (168)
T ss_dssp -----HHHHHHHHH-----------------------HCCTTSCEEEEEECGG--GGGG-CCSCHHHHHHHHHHHTCEEE
T ss_pred -----HHHHHHHHh-----------------------cCCCCCcEEEEEECcc--cccc-CccCHHHHHHHHHHcCCeEE
Confidence 011111111 1114689999999985 3322 13456777788877788999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
++||+...++
T Consensus 145 ~~Sa~~~~gi 154 (168)
T 1u8z_A 145 ETSAKTRANV 154 (168)
T ss_dssp ECCTTTCTTH
T ss_pred EeCCCCCCCH
Confidence 9999987655
No 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=5.6e-14 Score=130.64 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=61.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++ .......|..+.+.....+.+++. ..++.+|||||...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~- 87 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEINGE---------------KVKLQIWDTAGQER- 87 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS-SCCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGG-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHH-
Confidence 3589999999999999999999954 444455566666666666655542 14699999999743
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
+.......++.+|++++|+|++
T Consensus 88 ------~~~~~~~~~~~~d~~i~v~D~~ 109 (201)
T 2ew1_A 88 ------FRSITQSYYRSANALILTYDIT 109 (201)
T ss_dssp ------GHHHHGGGSTTCSEEEEEEETT
T ss_pred ------HHHHHHHHHhcCCEEEEEEECC
Confidence 2222345578899999999975
No 62
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=8.9e-14 Score=126.37 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=96.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++. ...+.+|||||.....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT-FDPELAATIGVDFKVKTISVDGN---------------KAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECSSGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCccCCCccceEEEEEEEEECCe---------------EEEEEEEeCCCchhhh
Confidence 4799999999999999999999543 33344455555555555555432 2469999999975332
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....++.+|++++|+|+++.. .... +..
T Consensus 79 ~-------~~~~~~~~~d~ii~v~d~~~~~----------------s~~~---------~~~------------------ 108 (195)
T 1x3s_A 79 T-------LTPSYYRGAQGVILVYDVTRRD----------------TFVK---------LDN------------------ 108 (195)
T ss_dssp C-------SHHHHHTTCCEEEEEEETTCHH----------------HHHT---------HHH------------------
T ss_pred h-------hhHHHhccCCEEEEEEECcCHH----------------HHHH---------HHH------------------
Confidence 2 2334567899999999974311 1000 000
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.++.+ .. .......|+++++||.| +.+. ....++..+++.+.+.+++
T Consensus 109 ------~~~~i----~~-------------------~~~~~~~p~ilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 109 ------WLNEL----ET-------------------YCTRNDIVNMLVGNKID--KENR--EVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp ------HHHHH----TT-------------------CCSCSCCEEEEEEECTT--SSSC--CSCHHHHHHHHHHTTCEEE
T ss_pred ------HHHHH----HH-------------------hcCcCCCcEEEEEECCc--Cccc--ccCHHHHHHHHHHcCCEEE
Confidence 01111 00 00114679999999985 3322 3445677788888889999
Q ss_pred EechhhhHHh
Q 012870 296 TISAQVEAEL 305 (454)
Q Consensus 296 ~iSA~~E~~l 305 (454)
++||+...++
T Consensus 156 ~~Sa~~~~gi 165 (195)
T 1x3s_A 156 EASAKTCDGV 165 (195)
T ss_dssp ECCTTTCTTH
T ss_pred EecCCCCCCH
Confidence 9999986555
No 63
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.53 E-value=1.4e-13 Score=121.49 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=55.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++.. ...++.|+.+.....+.+++. ..++.+|||||.....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQ---------------QCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 37999999999999999999996432 223333333333333333322 2468999999985443
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. + ....++++|++++|+|+.
T Consensus 66 ~----~---~~~~~~~~d~~i~v~d~~ 85 (167)
T 1c1y_A 66 A----M---RDLYMKNGQGFALVYSIT 85 (167)
T ss_dssp T----H---HHHHHHHCSEEEEEEETT
T ss_pred H----H---HHHHhccCCEEEEEEECC
Confidence 2 2 223467899999999974
No 64
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.53 E-value=1e-13 Score=123.82 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=94.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++... .....|.++.+.....+.+++. ...+.+|||||....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQ---------------KIKLQIWDTAGQERF 77 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEEEEEETTE---------------EEEEEEEECTTGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCe---------------EEEEEEEECCCChHh
Confidence 358999999999999999999996543 2222233333333444444332 246899999996432
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.......++++|++++|+|+++.. .... +.
T Consensus 78 -------~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------ 107 (179)
T 1z0f_A 78 -------RAVTRSYYRGAAGALMVYDITRRS----------------TYNH---------LS------------------ 107 (179)
T ss_dssp -------CHHHHHHHHTCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred -------hhhHHHHhccCCEEEEEEeCcCHH----------------HHHH---------HH------------------
Confidence 223345578899999999974311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.. . .....|+++++||.| +.+. .....+++++++...+.++
T Consensus 108 ------~~~~~~~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 154 (179)
T 1z0f_A 108 ------SWLTDARN-----------------------L-TNPNTVIILIGNKAD--LEAQ-RDVTYEEAKQFAEENGLLF 154 (179)
T ss_dssp ------HHHHHHHH-----------------------H-SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHH-----------------------h-cCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHcCCEE
Confidence 00111100 0 013679999999985 3322 1345677888888888999
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
+++||+...++
T Consensus 155 ~~~Sa~~~~gi 165 (179)
T 1z0f_A 155 LEASAKTGENV 165 (179)
T ss_dssp EECCTTTCTTH
T ss_pred EEEeCCCCCCH
Confidence 99999987555
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.53 E-value=8.1e-14 Score=125.39 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++... ...++.++.+.....+.+++.. ..+.+|||||....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY 79 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCccc
Confidence 347999999999999999999996542 3455556655555545444321 36899999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
. ......++.+|++++|+|+++. ..+.. +.
T Consensus 80 ~-------~~~~~~~~~~d~~i~v~d~~~~----------------~s~~~---------~~------------------ 109 (187)
T 2a9k_A 80 A-------AIRDNYFRSGEGFLCVFSITEM----------------ESFAA---------TA------------------ 109 (187)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETTCH----------------HHHHH---------HH------------------
T ss_pred H-------HHHHHHhccCCEEEEEEECcCH----------------HHHHH---------HH------------------
Confidence 2 1223446789999999997431 11100 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.... .....|+++++||.| +.+. .....+++++++...+.++
T Consensus 110 ------~~~~~i~~~~-----------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 157 (187)
T 2a9k_A 110 ------DFREQILRVK-----------------------EDENVPFLLVGNKSD--LEDK-RQVSVEEAKNRAEQWNVNY 157 (187)
T ss_dssp ------HHHHHHHHHH-----------------------CCTTCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHHhc-----------------------CCCCCCEEEEEECcc--cccc-CccCHHHHHHHHHHcCCeE
Confidence 0111111111 113689999999985 4322 1345677888888888999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 158 ~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 158 VETSAKTRANVD 169 (187)
T ss_dssp EECCTTTCTTHH
T ss_pred EEeCCCCCCCHH
Confidence 999999876653
No 66
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.53 E-value=1.3e-13 Score=126.63 Aligned_cols=154 Identities=20% Similarity=0.173 Sum_probs=99.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.. ...+++.|+.+.....+.+++.. ..+.+|||||....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY 75 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChhhh
Confidence 35899999999999999999999655 24556666666555555554321 36899999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
. ......++.+|++++|+|+++. ..+.. +.
T Consensus 76 ~-------~~~~~~~~~~~~~i~v~d~~~~----------------~s~~~---------~~------------------ 105 (206)
T 2bov_A 76 A-------AIRDNYFRSGEGFLCVFSITEM----------------ESFAA---------TA------------------ 105 (206)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETTCH----------------HHHHH---------HH------------------
T ss_pred H-------HHHHHHHhhCCEEEEEEECCCH----------------HHHHH---------HH------------------
Confidence 2 1223446789999999997431 11100 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.. .......|+++++||.| +.+. .....++++.++...+.++
T Consensus 106 ------~~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 153 (206)
T 2bov_A 106 ------DFREQILR-----------------------VKEDENVPFLLVGNKSD--LEDK-RQVSVEEAKNRAEQWNVNY 153 (206)
T ss_dssp ------HHHHHHHH-----------------------HTTCSCCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEE
T ss_pred ------HHHHHHHH-----------------------hcCCCCCCEEEEEeccC--cccc-ccccHHHHHHHHHHhCCeE
Confidence 01111111 11124789999999985 3322 1345677888887778899
Q ss_pred EEechhhhHHhcC
Q 012870 295 VTISAQVEAELTE 307 (454)
Q Consensus 295 v~iSA~~E~~l~~ 307 (454)
+++||+.+.++.+
T Consensus 154 ~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 154 VETSAKTRANVDK 166 (206)
T ss_dssp EEECTTTCTTHHH
T ss_pred EEEeCCCCCCHHH
Confidence 9999998776643
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.53 E-value=9.2e-14 Score=127.82 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=95.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++. ...+.+|||||....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~- 70 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS-FTPAFVSTVGIDFKVKTIYRNDK---------------RIKLQIWDTAGLERY- 70 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC-CCSCCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG-
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCccceeEEEEEEEECCe---------------EEEEEEEECCCchhh-
Confidence 4799999999999999999999543 33333343333333344443321 246999999998432
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
.......++.+|++++|+|+++.. .+.. +.
T Consensus 71 ------~~~~~~~~~~~d~ii~v~d~~~~~----------------s~~~---------~~------------------- 100 (203)
T 1zbd_A 71 ------RTITTAYYRGAMGFILMYDITNEE----------------SFNA---------VQ------------------- 100 (203)
T ss_dssp ------HHHHHTTGGGCSEEEEEEETTCHH----------------HHHH---------HH-------------------
T ss_pred ------cchHHHhhcCCCEEEEEEECcCHH----------------HHHH---------HH-------------------
Confidence 223345578899999999974311 1000 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
..+..+.. . .....|+++++||.| +.+. .....+++++++...+.+++
T Consensus 101 -----~~~~~i~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 101 -----DWSTQIKT-----------------------Y-SWDNAQVLLVGNKCD--MEDE-RVVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp -----HHHHHHHH-----------------------H-SCSSCEEEEEEECTT--CTTS-CCSCHHHHHHHHHHHTCEEE
T ss_pred -----HHHHHHHH-----------------------h-cCCCCCEEEEEECcc--cCcc-cccCHHHHHHHHHHCCCeEE
Confidence 00111100 0 014679999999985 4332 13345677788877788999
Q ss_pred EechhhhHHhc
Q 012870 296 TISAQVEAELT 306 (454)
Q Consensus 296 ~iSA~~E~~l~ 306 (454)
++||+...++.
T Consensus 149 ~~Sa~~~~gi~ 159 (203)
T 1zbd_A 149 EASAKDNINVK 159 (203)
T ss_dssp ECBTTTTBSSH
T ss_pred EEECCCCCCHH
Confidence 99999876663
No 68
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.53 E-value=7e-14 Score=127.33 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. ......|..+.+.....+.+++.. ..+.+|||||..+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR-FPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQERF 82 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS-CCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 45899999999999999999999543 333445555655555556554321 46999999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. ......++.+|++++|+|+++
T Consensus 83 ~~------~~~~~~~~~~d~iilv~D~~~ 105 (189)
T 1z06_A 83 RK------SMVQHYYRNVHAVVFVYDMTN 105 (189)
T ss_dssp HT------TTHHHHHTTCCEEEEEEETTC
T ss_pred hh------hhhHHHhcCCCEEEEEEECcC
Confidence 10 122344678999999999853
No 69
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.53 E-value=6.5e-14 Score=124.84 Aligned_cols=154 Identities=17% Similarity=0.094 Sum_probs=87.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|++.......+.+++| .....+.+++. ..++.+|||||.....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGE---------------DTTLVVVDTWEAEKLD 66 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTE---------------EEEEEEECCC------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCE---------------EEEEEEEecCCCCccc
Confidence 479999999999999999999976655555544444 33344444432 2468999999985421
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. ..+. ...++.+|++++|+|+++.. .+.. +..
T Consensus 67 ~--~~~~---~~~~~~~~~~i~v~d~~~~~----------------s~~~---------~~~------------------ 98 (175)
T 2nzj_A 67 K--SWSQ---ESCLQGGSAYVIVYSIADRG----------------SFES---------ASE------------------ 98 (175)
T ss_dssp ---CHHH---HHTTTSCSEEEEEEETTCHH----------------HHHH---------HHH------------------
T ss_pred h--hhhH---HhhcccCCEEEEEEECCCHH----------------HHHH---------HHH------------------
Confidence 1 1111 22356799999999974311 1100 000
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
.+..+.. .......|+++++||.| +.+. +....++.+.++...+.+++
T Consensus 99 ------~~~~l~~-----------------------~~~~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 146 (175)
T 2nzj_A 99 ------LRIQLRR-----------------------THQADHVPIILVGNKAD--LARC-REVSVEEGRACAVVFDCKFI 146 (175)
T ss_dssp ------HHHHHHH-----------------------CC----CCEEEEEECTT--CTTT-CCSCHHHHHHHHHHHTSEEE
T ss_pred ------HHHHHHH-----------------------hhccCCCCEEEEEEChh--hccc-cccCHHHHHHHHHHcCCeEE
Confidence 0110100 00113689999999985 4332 13445667777777788999
Q ss_pred EechhhhHHhc
Q 012870 296 TISAQVEAELT 306 (454)
Q Consensus 296 ~iSA~~E~~l~ 306 (454)
++||+...++.
T Consensus 147 ~~Sa~~g~gi~ 157 (175)
T 2nzj_A 147 ETSATLQHNVA 157 (175)
T ss_dssp ECBTTTTBSHH
T ss_pred EEecCCCCCHH
Confidence 99999876653
No 70
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.53 E-value=1.4e-13 Score=124.53 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=95.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccce-eeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~-~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|++.. ......|..+.+.. ...+.+++.... .... .....+.+|||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK-FNSKFITTVGIDFREKRVVYRANGPDG---AVGR---GQRIHLQLWDTAGLER 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCCSCCCCCSEEEEEEEEEECTTSCCC---SSCC---CEEEEEEEEEECCSGG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC-CCcCcccccceeeeeEEEEEecCCccc---cccc---CcEEEEEEEeCCCcHH
Confidence 34899999999999999999999544 33333343333333 223333321000 0000 0024699999999843
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+.......++++|++++|+|+++.. ....
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------------------------- 111 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQ----------------SFLN---------------------------- 111 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHH----------------HHHT----------------------------
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHH----------------HHHH----------------------------
Confidence 2233445678899999999985311 1000
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
+...++.+.. .......|+++++||.| +.+. .....+++++++...+.+
T Consensus 112 -----~~~~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~ 160 (195)
T 3bc1_A 112 -----VRNWISQLQM-----------------------HAYSENPDIVLCGNKSD--LEDQ-RAVKEEEARELAEKYGIP 160 (195)
T ss_dssp -----HHHHHHHHHH-----------------------HSSSSSCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCC
T ss_pred -----HHHHHHHHHH-----------------------hcCCCCCCEEEEEECcc--cccc-cccCHHHHHHHHHHcCCC
Confidence 0001111111 11114689999999985 3322 133457778888777889
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
++++||+...++
T Consensus 161 ~~~~Sa~~~~~v 172 (195)
T 3bc1_A 161 YFETSAANGTNI 172 (195)
T ss_dssp EEECCTTTCTTH
T ss_pred EEEEECCCCCCH
Confidence 999999987655
No 71
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=130.36 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=93.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++ ........|+++.+.....+.+++.. ..+.+|||||....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE-NKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERF 87 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh-CCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhH
Confidence 458999999999999999999994 44444556666666666666555321 46999999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
. ......++.+|++++|+|+++.. .+.. +.
T Consensus 88 ~-------~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~------------------ 117 (200)
T 2o52_A 88 R-------SVTRSYYRGAAGALLVYDITSRE----------------TYNS---------LA------------------ 117 (200)
T ss_dssp S-------CCCHHHHTTCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred H-------HHHHHHhccCCEEEEEEECcCHH----------------HHHH---------HH------------------
Confidence 2 22334577899999999975311 1000 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..+..+... .....|+++++||.| +.+. ......+.++++...+.++
T Consensus 118 ------~~~~~~~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 164 (200)
T 2o52_A 118 ------AWLTDARTL------------------------ASPNIVVILCGNKKD--LDPE-REVTFLEASRFAQENELMF 164 (200)
T ss_dssp ------HHHHHHHHH------------------------TCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHHh------------------------cCCCCcEEEEEECCC--cccc-cccCHHHHHHHHHHcCCEE
Confidence 001111000 013679999999985 3322 1334567777888888999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 165 ~~~SA~~g~gi~ 176 (200)
T 2o52_A 165 LETSALTGENVE 176 (200)
T ss_dssp EEECTTTCTTHH
T ss_pred EEEeCCCCCCHH
Confidence 999999876663
No 72
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.52 E-value=6.6e-14 Score=123.23 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=93.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.||||||||+|+|+++... ..++.++.+.....+.+++. +..+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTCCH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 379999999999999999999965432 23333443443444444431 2458999999974322
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....++.+|++++|+|+.+... +..+ .
T Consensus 66 ~-------~~~~~~~~~~~~i~v~d~~~~~s-------------~~~~------------~------------------- 94 (167)
T 1kao_A 66 S-------MRDLYIKNGQGFILVYSLVNQQS-------------FQDI------------K------------------- 94 (167)
T ss_dssp H-------HHHHHHHHCSEEEEEEETTCHHH-------------HHHH------------H-------------------
T ss_pred H-------HHHHHhccCCEEEEEEeCCCHHH-------------HHHH------------H-------------------
Confidence 1 22234678999999999743110 0000 0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
..++.+.+. ......|+++++||.| ..+. +....++.+.++.+.+.+++
T Consensus 95 -----~~~~~i~~~-----------------------~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 95 -----PMRDQIIRV-----------------------KRYEKVPVILVGNKVD--LESE-REVSSSEGRALAEEWGCPFM 143 (167)
T ss_dssp -----HHHHHHHHH-----------------------TTTSCCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHHTSCEE
T ss_pred -----HHHHHHHHh-----------------------cCCCCCCEEEEEECCc--cccc-ccCCHHHHHHHHHHhCCCEE
Confidence 011111111 1114689999999985 3222 13345667777777788999
Q ss_pred EechhhhHHhc
Q 012870 296 TISAQVEAELT 306 (454)
Q Consensus 296 ~iSA~~E~~l~ 306 (454)
++||+...++.
T Consensus 144 ~~Sa~~~~gi~ 154 (167)
T 1kao_A 144 ETSAKSKTMVD 154 (167)
T ss_dssp EECTTCHHHHH
T ss_pred EecCCCCcCHH
Confidence 99999876663
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.52 E-value=2.1e-13 Score=122.11 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++.. ...+.+|||||....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~ 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERF 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHh
Confidence 45899999999999999999999544 334445666666666666554211 246899999996433
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. .....++.+|++++|+|+++
T Consensus 72 ~~-------~~~~~~~~~d~~i~v~d~~~ 93 (182)
T 1ky3_A 72 QS-------LGVAFYRGADCCVLVYDVTN 93 (182)
T ss_dssp ------------CCSTTCCEEEEEEETTC
T ss_pred hh-------hhHHHhhcCCEEEEEEECCC
Confidence 22 22344678999999999753
No 74
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=7.2e-14 Score=123.55 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=58.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++. ......|.++.+.....+.+++. ..++.+|||||....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~- 65 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSND-FAENKEPTIGAAFLTQRVTINEH---------------TVKFEIWDTAGQERF- 65 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCChhh-
Confidence 3689999999999999999999554 33344455555555555555432 246999999996432
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.......++++|++++|+|++
T Consensus 66 ------~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T 1ek0_A 66 ------ASLAPXYYRNAQAALVVYDVT 86 (170)
T ss_dssp ------GGGHHHHHTTCSEEEEEEETT
T ss_pred ------hhhhhhhhccCcEEEEEEecC
Confidence 222334567899999999974
No 75
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.52 E-value=1e-13 Score=126.49 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=94.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+|+|.+|||||||+|+|++..... ...|..+.+.....+.+++. ..++.+|||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTA---------------AVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTE---------------EEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCE---------------EEEEEEEeCCCchh
Confidence 345899999999999999999999654332 22333333333333333321 24689999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
... .....++.+|++++|+|+++.. .+.. +..
T Consensus 87 ~~~-------~~~~~~~~~d~vi~v~D~~~~~----------------s~~~---------~~~---------------- 118 (193)
T 2oil_A 87 YRA-------ITSAYYRGAVGALLVFDLTKHQ----------------TYAV---------VER---------------- 118 (193)
T ss_dssp TCT-------THHHHHTTCCEEEEEEETTCHH----------------HHHT---------HHH----------------
T ss_pred hhh-------hhHHHhccCCEEEEEEECCCHH----------------HHHH---------HHH----------------
Confidence 322 2234467899999999974311 1000 000
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
.++.+... .....|+++++||.| +.+. .....++++.++...+.+
T Consensus 119 --------~l~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 119 --------WLKELYDH------------------------AEATIVVMLVGNKSD--LSQA-REVPTEEARMFAENNGLL 163 (193)
T ss_dssp --------HHHHHHTT------------------------SCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCE
T ss_pred --------HHHHHHHh------------------------cCCCCeEEEEEECCC--cccc-cccCHHHHHHHHHHcCCE
Confidence 01111000 014679999999985 4322 134566777888778899
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
++++||+...++
T Consensus 164 ~~~~Sa~~~~gi 175 (193)
T 2oil_A 164 FLETSALDSTNV 175 (193)
T ss_dssp EEEECTTTCTTH
T ss_pred EEEEeCCCCCCH
Confidence 999999987655
No 76
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.52 E-value=1.1e-13 Score=124.27 Aligned_cols=152 Identities=15% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++... .....|..+.+.....+.+++. ..++.+|||||....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQF-VEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 74 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-TTTSCCCSCCSEEEEEEEETTE---------------EEEEEEEECCCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCcCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCChhh
Confidence 347999999999999999999995543 3333444444444444444432 246999999996432
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.......++.+|++++|+|+++.. .+.. +..
T Consensus 75 -------~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~~----------------- 105 (181)
T 2efe_B 75 -------HSLAPMYYRGAAAAIIVFDVTNQA----------------SFER---------AKK----------------- 105 (181)
T ss_dssp -------GGGTHHHHTTCSEEEEEEETTCHH----------------HHHH---------HHH-----------------
T ss_pred -------hhhhHHHhccCCEEEEEEECCCHH----------------HHHH---------HHH-----------------
Confidence 222334567899999999974311 1000 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
.++.+... .....|+++++||.| ..+. .....+++++++...+.++
T Consensus 106 -------~~~~~~~~------------------------~~~~~p~i~v~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 151 (181)
T 2efe_B 106 -------WVQELQAQ------------------------GNPNMVMALAGNKSD--LLDA-RKVTAEDAQTYAQENGLFF 151 (181)
T ss_dssp -------HHHHHHHH------------------------SCTTCEEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCEE
T ss_pred -------HHHHHHHh------------------------cCCCCcEEEEEECCc--cccc-ccCCHHHHHHHHHHcCCEE
Confidence 11111000 013678999999985 4332 1345677888888888999
Q ss_pred EEechhhhHHh
Q 012870 295 VTISAQVEAEL 305 (454)
Q Consensus 295 v~iSA~~E~~l 305 (454)
+++||+...++
T Consensus 152 ~~~Sa~~g~gi 162 (181)
T 2efe_B 152 METSAKTATNV 162 (181)
T ss_dssp EECCSSSCTTH
T ss_pred EEEECCCCCCH
Confidence 99999876544
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=129.90 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=93.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++. ..++.+|||||..+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEIQGK---------------RVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEETTE---------------EEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEECCE---------------EEEEEEEECCCcHh
Confidence 345899999999999999999999544 33333344444555555555432 14699999999743
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
. .......++.+|++++|+|+++.. .+.. +.
T Consensus 91 ~-------~~~~~~~~~~~d~iilv~D~~~~~----------------s~~~---------~~----------------- 121 (201)
T 2hup_A 91 F-------RTITQSYYRSANGAILAYDITKRS----------------SFLS---------VP----------------- 121 (201)
T ss_dssp G-------HHHHHHHHTTCSEEEEEEETTBHH----------------HHHT---------HH-----------------
T ss_pred H-------HHHHHHHHhhCCEEEEEEECCCHH----------------HHHH---------HH-----------------
Confidence 2 122334567899999999974311 1100 00
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCC-
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS- 292 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~- 292 (454)
..++.+... .....|+++++||.| +.+. +....+++++++...+.
T Consensus 122 -------~~~~~i~~~------------------------~~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 122 -------HWIEDVRKY------------------------AGSNIVQLLIGNKSD--LSEL-REVSLAEAQSLAEHYDIL 167 (201)
T ss_dssp -------HHHHHHHHH------------------------SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCS
T ss_pred -------HHHHHHHHh------------------------cCCCCCEEEEEECCc--cccc-cccCHHHHHHHHHHcCCC
Confidence 011111110 013679999999985 3322 13456778888888888
Q ss_pred cEEEechhhhHHh
Q 012870 293 GRVTISAQVEAEL 305 (454)
Q Consensus 293 ~~v~iSA~~E~~l 305 (454)
+++++||+...++
T Consensus 168 ~~~~~SA~~g~gi 180 (201)
T 2hup_A 168 CAIETSAKDSSNV 180 (201)
T ss_dssp EEEECBTTTTBSH
T ss_pred EEEEEeCCCCCCH
Confidence 8999999987665
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=2.3e-13 Score=124.49 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc-ccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~-~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|++.... ...+.+++|. ....+.++.. ..++.+|||||...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNE---------------LHKFLIWDTAGQER 84 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSS---------------EEEEEEEEECCSGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCE---------------EEEEEEEcCCCchh
Confidence 3589999999999999999999965422 3344444443 2223333321 24699999999743
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
.. ......++.+|++++|+|+++... +.. +..
T Consensus 85 ~~-------~~~~~~~~~~d~iilV~d~~~~~s-------------~~~------------~~~---------------- 116 (192)
T 2fg5_A 85 FH-------SLAPMYYRGSAAAVIVYDITKQDS-------------FYT------------LKK---------------- 116 (192)
T ss_dssp GG-------GGTHHHHTTCSEEEEEEETTCTHH-------------HHH------------HHH----------------
T ss_pred hH-------hhhHHhhccCCEEEEEEeCCCHHH-------------HHH------------HHH----------------
Confidence 22 223345678999999999753210 100 000
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
.++.+.+ . .....|+++++||.| +.+. +....+++++++.+.+.+
T Consensus 117 --------~~~~i~~-----------------------~-~~~~~piiiv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~ 161 (192)
T 2fg5_A 117 --------WVKELKE-----------------------H-GPENIVMAIAGNKCD--LSDI-REVPLKDAKEYAESIGAI 161 (192)
T ss_dssp --------HHHHHHH-----------------------H-SCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHTTTCE
T ss_pred --------HHHHHHH-----------------------h-CCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHcCCE
Confidence 0111100 0 013679999999985 3322 134567788888888899
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
++++||+...++
T Consensus 162 ~~~~Sa~~~~gi 173 (192)
T 2fg5_A 162 VVETSAKNAINI 173 (192)
T ss_dssp EEECBTTTTBSH
T ss_pred EEEEeCCCCcCH
Confidence 999999876544
No 79
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.52 E-value=5.1e-14 Score=129.09 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++ .......|..+.+.....+.+++.. ..+.+|||||....
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD-TFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERF 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcHHH
Confidence 4579999999999999999999954 3434445666666666666554321 46899999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.......++.+|++++|+|+++
T Consensus 89 -------~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 89 -------NSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTC
T ss_pred -------HHHHHHHhcCCCEEEEEEECcC
Confidence 2223455688999999999853
No 80
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=4.3e-14 Score=134.61 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=90.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCC--cccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p--~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
...++|+|+|.+|||||||+|+|+|... ..+..| ++|.++....+.+.+ ..+.+|||||+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~ 88 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKE-----------------TELVVVDTPGI 88 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETT-----------------EEEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCC-----------------ceEEEEECCCc
Confidence 3458999999999999999999996544 555666 788888888877763 46999999999
Q ss_pred cCCCCcccccc----cccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhh
Q 012870 132 VKGASQGEGLG----NKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLEL 187 (454)
Q Consensus 132 ~~~~~~~~~l~----~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el 187 (454)
......+..+. ..+....+.+|++|+|+|+... .+++.+.|+.|.+.+- .+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~i 167 (239)
T 3lxx_A 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT-NLHDYL 167 (239)
T ss_dssp C-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC----------
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc-cHHHHH
Confidence 76554332232 2333445678999999997541 1466677777755331 111111
Q ss_pred hcccHHHHHHHHHHHHhcccCCCc---cccchHHHHHHHHHHHHhhhC
Q 012870 188 VFSDLDQIEKRMEKLKKGKAKDSQ---SKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 188 ~l~d~~~l~~~~~~~~~~~~~~~v---Sak~~~~~~~ll~~i~~~L~~ 232 (454)
... .+.+....+........... ++.+..++.+|++.+.+.+.+
T Consensus 168 ~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 168 REA-PEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ----CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-hHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 110 11222323322221111111 233557888999998888854
No 81
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.51 E-value=1.6e-13 Score=136.41 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=68.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+++|.||||||||+|+|+++....++++|++|++...+.+.+.+ +.++.+|||||.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~----------------~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG----------------NMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT----------------TEEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC----------------ceEEEEEECCCcHHHh
Confidence 479999999999999999999976667778899999999988877643 3579999999985431
Q ss_pred CcccccccccccchhccceEEEEEeccC
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. .+.......++++|++++|+|+++
T Consensus 67 ~~--~~~~~~~~~~~~ad~vi~V~D~t~ 92 (307)
T 3r7w_A 67 EN--YFTKQKDHIFQMVQVLIHVFDVES 92 (307)
T ss_dssp HH--HHTTTHHHHHTTCSEEEEEEETTC
T ss_pred hh--hhhhHHHHHhccCCEEEEEEECCC
Confidence 00 001122334578999999999854
No 82
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.51 E-value=2.8e-13 Score=122.11 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=94.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. . ...++.++.+.....+.+++. ...+.+|||||....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 79 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI-F-VDDYDPTIEDSYLKHTEIDNQ---------------WAILDVLDTAGQEEF 79 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC-C-CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCSCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCCccceeEEEEEeCCc---------------EEEEEEEECCCchhh
Confidence 45899999999999999999999543 2 233444444444444444432 134778999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
.. .....++.+|++++|+|+++... +..+ .
T Consensus 80 ~~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~~~------------~------------------ 109 (183)
T 3kkq_A 80 SA-------MREQYMRTGDGFLIVYSVTDKAS-------------FEHV------------D------------------ 109 (183)
T ss_dssp CS-------SHHHHHHHCSEEEEEEETTCHHH-------------HHTH------------H------------------
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHH-------------HHHH------------H------------------
Confidence 22 22344678999999999753210 1000 0
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..+..+.. .......|+++++||.| +.+. .....+++++++...+.++
T Consensus 110 ------~~~~~~~~-----------------------~~~~~~~p~ilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 157 (183)
T 3kkq_A 110 ------RFHQLILR-----------------------VKDRESFPMILVANKVD--LMHL-RKVTRDQGKEMATKYNIPY 157 (183)
T ss_dssp ------HHHHHHHH-----------------------HHTSSCCCEEEEEECTT--CSTT-CCSCHHHHHHHHHHHTCCE
T ss_pred ------HHHHHHHH-----------------------hcCCCCCcEEEEEECCC--chhc-cCcCHHHHHHHHHHhCCeE
Confidence 00111100 11124679999999985 4332 2445677888888888999
Q ss_pred EEechh-hhHHh
Q 012870 295 VTISAQ-VEAEL 305 (454)
Q Consensus 295 v~iSA~-~E~~l 305 (454)
+++||+ ...++
T Consensus 158 ~~~Sa~~~~~~v 169 (183)
T 3kkq_A 158 IETSAKDPPLNV 169 (183)
T ss_dssp EEEBCSSSCBSH
T ss_pred EEeccCCCCCCH
Confidence 999998 66544
No 83
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.51 E-value=1.5e-14 Score=150.19 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=100.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|+|.+|+|||||+|+|++...+.+++++++|.++....+.+.+. .++.+|||||+...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCcc
Confidence 45799999999999999999999777778899999999999988887641 26999999999876
Q ss_pred CCcccccccccccchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~ 200 (454)
...+..........++.+|++++|+|+.. +.+++.+.|+.|...+-.. ...+
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--------------~~~~ 162 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--------------ELKG 162 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--------------HHHH
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--------------HHHH
Confidence 55444444556677889999999999833 2357888899986543211 0011
Q ss_pred HHHhc--ccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 201 KLKKG--KAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 201 ~~~~~--~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.+... .+...+||++|.|+.++++.+.+.+++.
T Consensus 163 ~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 163 LYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp HSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred HHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 11111 1234589999999999999999999654
No 84
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.51 E-value=5.4e-14 Score=132.68 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=93.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.. ..++++|++|.+.....+...+ .++.+|||||+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcCc
Confidence 45899999999999999999999554 4478899999988877766542 56999999999653
Q ss_pred CCcccc-c-ccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhccc
Q 012870 135 ASQGEG-L-GNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 135 ~~~~~~-l-~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
...... + ........+.+|++++|+|+++. .+++.+.|+.|...+-.+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~--------~ 161 (228)
T 2qu8_A 90 AFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL--------S 161 (228)
T ss_dssp CGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC--------C
T ss_pred ccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh--------H
Confidence 321110 0 01112235678999999998753 234556666664422111 0
Q ss_pred HHHHHHHHHHHHhc----ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 192 LDQIEKRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 192 ~~~l~~~~~~~~~~----~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+ .......+... .+...+||++|.|+.++++.+.+.+..
T Consensus 162 ~~-~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 162 ID-NKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HH-HHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 00 01112222111 223448999999999999998887754
No 85
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=2.2e-14 Score=130.04 Aligned_cols=149 Identities=24% Similarity=0.339 Sum_probs=99.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++ ....++++|++|.++..+.+.+.+ ..+.+|||||+....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG-ENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLT 68 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT-TCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhC-CCccccCCCCeeccceEEEEEeCC-----------------cEEEEEECCCcCccc
Confidence 47999999999999999999994 456778899999998888887653 569999999986543
Q ss_pred Cc--ccccccccccchhccceEEEEEeccC--------------CcceEEecCccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 136 ~~--~~~l~~~fl~~ir~aD~il~VvD~~~--------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
.. .+.+...++.. ..+|++++|+|+++ +.+++.+.|+.|...... + ......+.+.
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~-~~~~~~~~~~- 140 (188)
T 2wjg_A 69 ANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----I-EIDVDKLEKI- 140 (188)
T ss_dssp SSSHHHHHHHHHHHH-HCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----C-CCCHHHHHHH-
T ss_pred cccHHHHHHHHHHhc-cCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccccc-----c-hHHHHHHHHH-
Confidence 21 11222222221 35999999999864 234566667666421110 0 0111111111
Q ss_pred HHHHhcccCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 200 ~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
.. .+...+||+++.++.++++.+.+.+.+..
T Consensus 141 --~~--~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 141 --LG--VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp --HT--SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred --hC--CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 11 12345899999999999999998887653
No 86
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.8e-13 Score=128.43 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|+|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.+|||||....
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 75 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE-FNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQERY 75 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC-CCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccch
Confidence 34799999999999999999999544 334445666666666666555321 46899999997543
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. .....++.+|++++|+|++
T Consensus 76 ~~-------~~~~~~~~~d~vilV~D~~ 96 (223)
T 3cpj_B 76 RA-------ITSAYYRGAVGALIVYDIS 96 (223)
T ss_dssp TC-------CCGGGTTTCCEEEEEEC-C
T ss_pred hh-------hHHHHhccCCEEEEEEeCC
Confidence 32 2234467899999999974
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=3.5e-14 Score=129.72 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=96.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+|+|.+|||||||+|+|++.. ......|..+.+.....+.+... ...+.+|||||...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT-FTPAFVSTVGIDFKVKTVYRHEK---------------RVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT-TCCCEEEEETTTEEEEEEEETTT---------------TEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC-CCcccCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCChHH
Confidence 456899999999999999999999543 22223333344444444444432 25699999999632
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
+.......++.+|++++|+|+++.. .+.. +.
T Consensus 85 -------~~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~----------------- 115 (191)
T 3dz8_A 85 -------YRTITTAYYRGAMGFILMYDITNEE----------------SFNA---------VQ----------------- 115 (191)
T ss_dssp -------CHHHHHHHHTTCCEEEEEEETTCHH----------------HHHT---------HH-----------------
T ss_pred -------HHHHHHHHHccCCEEEEEEECcCHH----------------HHHH---------HH-----------------
Confidence 2223344577899999999975311 1100 00
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCc
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 293 (454)
..++.+.. . .....|+++++||.| +.+. +....++.+.++...+.+
T Consensus 116 -------~~~~~i~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~ 161 (191)
T 3dz8_A 116 -------DWATQIKT-----------------------Y-SWDNAQVILVGNKCD--MEEE-RVVPTEKGQLLAEQLGFD 161 (191)
T ss_dssp -------HHHHHHHH-----------------------H-SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCE
T ss_pred -------HHHHHHHH-----------------------h-cCCCCCEEEEEECCC--Cccc-cccCHHHHHHHHHHcCCe
Confidence 01111100 0 114679999999985 3322 134566777788878899
Q ss_pred EEEechhhhHHh
Q 012870 294 RVTISAQVEAEL 305 (454)
Q Consensus 294 ~v~iSA~~E~~l 305 (454)
++++||+...++
T Consensus 162 ~~~~Sa~~~~gi 173 (191)
T 3dz8_A 162 FFEASAKENISV 173 (191)
T ss_dssp EEECBTTTTBSH
T ss_pred EEEEECCCCCCH
Confidence 999999987655
No 88
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.50 E-value=1.4e-13 Score=121.59 Aligned_cols=84 Identities=18% Similarity=0.095 Sum_probs=55.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++.... ...|..+.+.....+.+++. ...+.+|||||....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~- 68 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDT---------------TVKFEIWDTAGQERY- 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG-
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCcHHh-
Confidence 4799999999999999999999654322 22222222222333333321 246899999997432
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.......++.+|++++|+|++
T Consensus 69 ------~~~~~~~~~~~d~~i~v~d~~ 89 (170)
T 1r2q_A 69 ------HSLAPMYYRGAQAAIVVYDIT 89 (170)
T ss_dssp ------GGGHHHHHTTCSEEEEEEETT
T ss_pred ------hhhhHHhccCCCEEEEEEECC
Confidence 222334567899999999974
No 89
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.50 E-value=5e-13 Score=121.42 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=91.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++.. ...++.++.+.....+.+.+. ...+.+|||||.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 83 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYS 83 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC-----
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 47999999999999999999996542 334455555544444444432 1458999999975432
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. .....++.+|++++|+|+.+. ..+.. +.
T Consensus 84 ~-------~~~~~~~~~d~~i~v~d~~~~----------------~s~~~---------~~------------------- 112 (190)
T 3con_A 84 A-------MRDQYMRTGEGFLCVFAINNS----------------KSFAD---------IN------------------- 112 (190)
T ss_dssp -------------CTTCSEEEEEEETTCH----------------HHHHH---------HH-------------------
T ss_pred H-------HHHHhhCcCCEEEEEEECcCH----------------HHHHH---------HH-------------------
Confidence 2 122346789999999997431 11100 00
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
..++.+.. +......|+++++||.| ..+. ....+++++++++.+.+++
T Consensus 113 -----~~~~~i~~-----------------------~~~~~~~p~ilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 113 -----LYREQIKR-----------------------VKDSDDVPMVLVGNKCD--LPTR--TVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp -----HHHHHHHH-----------------------HHTCSCCCEEEEEECTT--CSCC--CSCHHHHHHHHHHHTCCEE
T ss_pred -----HHHHHHHH-----------------------HhCCCCCeEEEEEECCc--CCcc--cCCHHHHHHHHHHcCCeEE
Confidence 00111100 11113679999999985 3322 3456777888887788999
Q ss_pred EechhhhHHhc
Q 012870 296 TISAQVEAELT 306 (454)
Q Consensus 296 ~iSA~~E~~l~ 306 (454)
++||+...++.
T Consensus 161 ~~Sa~~~~gi~ 171 (190)
T 3con_A 161 ETSAKTRQGVE 171 (190)
T ss_dssp ECCTTTCTTHH
T ss_pred EEeCCCCCCHH
Confidence 99999876653
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.50 E-value=5.3e-13 Score=117.05 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=92.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|+|++... ...++.++.+.....+..++. ...+.+|||||..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCE---------------EEEEEEEECCCchhhhH
Confidence 6899999999999999999996532 233344444443444444331 24588999999754322
Q ss_pred cccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccch
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE 216 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~~ 216 (454)
.....++.+|++++|+|+++. ..+.. +.
T Consensus 67 -------~~~~~~~~~~~~i~v~d~~~~----------------~~~~~---------~~-------------------- 94 (166)
T 2ce2_X 67 -------MRDQYMRTGEGFLCVFAINNT----------------KSFED---------IH-------------------- 94 (166)
T ss_dssp -------HHHHHHHHCSEEEEEEETTCH----------------HHHHH---------HH--------------------
T ss_pred -------HHHHhhccCCEEEEEEECCCH----------------HHHHH---------HH--------------------
Confidence 122346789999999997421 11100 00
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEEE
Q 012870 217 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 296 (454)
Q Consensus 217 ~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 296 (454)
..++.+.. .......|+++++||.| ..+. ....+++++++.+.+.++++
T Consensus 95 ----~~~~~i~~-----------------------~~~~~~~p~iiv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 2ce2_X 95 ----QYREQIKR-----------------------VKDSDDVPMVLVGNKSD--LAAR--TVESRQAQDLARSYGIPYIE 143 (166)
T ss_dssp ----HHHHHHHH-----------------------HHTCSCCCEEEEEECTT--CSCC--CSCHHHHHHHHHHHTCCEEE
T ss_pred ----HHHHHHHH-----------------------hcCCCCCcEEEEEEchh--hhhc--ccCHHHHHHHHHHcCCeEEE
Confidence 01111111 11113689999999985 3332 34566777788777899999
Q ss_pred echhhhHHh
Q 012870 297 ISAQVEAEL 305 (454)
Q Consensus 297 iSA~~E~~l 305 (454)
+||+...++
T Consensus 144 ~Sa~~~~gi 152 (166)
T 2ce2_X 144 TSAKTRQGV 152 (166)
T ss_dssp ECTTTCTTH
T ss_pred ecCCCCCCH
Confidence 999876555
No 91
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.49 E-value=7.4e-14 Score=132.12 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=94.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+||+|||.+|||||||++++++ ........|....+.....+.+++.. .++.+|||||..+..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~-~~f~~~~~~Tig~d~~~k~~~~~~~~---------------v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQATIGIDFLSKTMYLEDRT---------------IRLQLWDTAGLERFR 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-SCCC----------CEEEEEECSSCE---------------EEEEEECCSCTTTCG
T ss_pred cEEEEEECcCCcCHHHHHHHHHh-CCCCCCcCCccceEEEEEEEEecceE---------------EEEEEEECCCchhhh
Confidence 47999999999999999999994 44444444544445545555554422 468999999986544
Q ss_pred CcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak~ 215 (454)
. +. -..++.+|++++|+|..+.. .++. +...
T Consensus 77 ~----l~---~~~~~~a~~~ilv~di~~~~----------------Sf~~---------i~~~----------------- 107 (216)
T 4dkx_A 77 S----LI---PSYIRDSAAAVVVYDITNVN----------------SFQQ---------TTKW----------------- 107 (216)
T ss_dssp G----GH---HHHHTTCSEEEEEEETTCHH----------------HHHT---------HHHH-----------------
T ss_pred h----HH---HHHhccccEEEEEeecchhH----------------HHHH---------HHHH-----------------
Confidence 3 22 23468899999999974321 1110 0111
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEE
Q 012870 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (454)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 295 (454)
++.+... .-..-|+++|+||.| +.+. +....++.++++++.+.+++
T Consensus 108 -------~~~i~~~------------------------~~~~~piilVgNK~D--l~~~-r~V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 108 -------IDDVRTE------------------------RGSDVIIMLVGNKTD--LADK-RQVSIEEGERKAKELNVMFI 153 (216)
T ss_dssp -------HHHHHHH------------------------HTTSSEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEE
T ss_pred -------HHHHHHh------------------------cCCCCeEEEEeeccc--hHhc-CcccHHHHhhHHHHhCCeeE
Confidence 1111000 013568999999985 4332 24567888899999999999
Q ss_pred EechhhhHHhc
Q 012870 296 TISAQVEAELT 306 (454)
Q Consensus 296 ~iSA~~E~~l~ 306 (454)
.+||+...++.
T Consensus 154 e~SAktg~nV~ 164 (216)
T 4dkx_A 154 ETSAKAGYNVK 164 (216)
T ss_dssp EEBTTTTBSHH
T ss_pred EEeCCCCcCHH
Confidence 99999876663
No 92
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.48 E-value=3.4e-13 Score=121.05 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=54.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++.... ..| |+.+.....+.+++. ...+.+|||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESEQYKKEMLVDGQ---------------THLVLIREEAGAPD-- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSSEEEEEEEETTE---------------EEEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEEEEEECCE---------------EEEEEEEECCCCch--
Confidence 4799999999999999999999655432 223 332333344444432 24689999999753
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
...++++|++++|+|++
T Consensus 67 ----------~~~~~~~d~~ilv~D~~ 83 (178)
T 2iwr_A 67 ----------AKFSGWADAVIFVFSLE 83 (178)
T ss_dssp ----------HHHHHHCSEEEEEEETT
T ss_pred ----------hHHHHhCCEEEEEEECc
Confidence 13467899999999975
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=3.9e-13 Score=119.01 Aligned_cols=83 Identities=16% Similarity=0.198 Sum_probs=52.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++. ......|... ......+..+.. ...+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~-~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGT-FRESYIPTVE-DTYRQVISCDKS---------------ICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC-CCSSCCCCSC-EEEEEEEEETTE---------------EEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCCcc-ccEEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 4799999999999999999999543 2222222211 111122222211 2468999999975322
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
......++.+|++++|+|++
T Consensus 66 -------~~~~~~~~~~~~~i~v~d~~ 85 (172)
T 2erx_A 66 -------AMQRLSISKGHAFILVYSIT 85 (172)
T ss_dssp -------HHHHHHHHHCSEEEEEEETT
T ss_pred -------HHHHHhcccCCEEEEEEECc
Confidence 12234467899999999985
No 94
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.47 E-value=2.2e-13 Score=126.80 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=96.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|+|.+|||||||+|+|++. .......|..+.+.....+.+++.... ....+....++.||||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~l~Dt~G~~~- 96 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN-KFNPKFITTVGIDFREKRVVYNAQGPN-----GSSGKAFKVHLQLWDTAGQER- 96 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS-CCCCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEEEEEEESHHH-
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC-CCCcCCCCceeEEEEEEEEEECCcccc-----ccccCceeEEEEEEECCCcHh-
Confidence 4589999999999999999999954 333333344444444444444432000 000001124699999999632
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
+.......++.+|++++|+|+++.. .+.. +..
T Consensus 97 ------~~~~~~~~~~~~d~iilV~D~~~~~----------------s~~~---------~~~----------------- 128 (217)
T 2f7s_A 97 ------FRSLTTAFFRDAMGFLLMFDLTSQQ----------------SFLN---------VRN----------------- 128 (217)
T ss_dssp ------HHHHHHHHHTTCCEEEEEEETTCHH----------------HHHH---------HHH-----------------
T ss_pred ------HHhHHHHHhcCCCEEEEEEECcCHH----------------HHHH---------HHH-----------------
Confidence 2223345578899999999974310 1000 000
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
++..-. . .......|+++|+||.| +.+. .....+++++++...+.++
T Consensus 129 --------------~l~~i~---~-------------~~~~~~~piilV~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 129 --------------WMSQLQ---A-------------NAYCENPDIVLIGNKAD--LPDQ-REVNERQARELADKYGIPY 175 (217)
T ss_dssp --------------HHHTCC---C-------------CCTTTCCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCCE
T ss_pred --------------HHHHHH---H-------------hcCcCCCCEEEEEECCc--cccc-cccCHHHHHHHHHHCCCcE
Confidence 011000 0 00114689999999985 3322 1334577788888888999
Q ss_pred EEechhhhHHhc
Q 012870 295 VTISAQVEAELT 306 (454)
Q Consensus 295 v~iSA~~E~~l~ 306 (454)
+++||+...++.
T Consensus 176 ~~~Sa~~g~gi~ 187 (217)
T 2f7s_A 176 FETSAATGQNVE 187 (217)
T ss_dssp EEEBTTTTBTHH
T ss_pred EEEECCCCCCHH
Confidence 999999876663
No 95
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.7e-13 Score=123.40 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=93.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++... ..++.++.+.....+.+.+. ...+.+|||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDE---------------VVSMEILDTAGQED- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCE---------------EEEEEEEECCCCCc-
Confidence 4589999999999999999999965432 22232332222333333321 24689999999865
Q ss_pred CCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCcccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSak 214 (454)
. ......++.+|++++|+|+++.. .+.. +.
T Consensus 89 ~-------~~~~~~~~~~d~iilv~D~~~~~----------------s~~~---------~~------------------ 118 (196)
T 2atv_A 89 T-------IQREGHMRWGEGFVLVYDITDRG----------------SFEE---------VL------------------ 118 (196)
T ss_dssp C-------HHHHHHHHHCSEEEEEEETTCHH----------------HHHT---------HH------------------
T ss_pred c-------cchhhhhccCCEEEEEEECcCHH----------------HHHH---------HH------------------
Confidence 1 12234467899999999985311 1100 00
Q ss_pred chHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcE
Q 012870 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (454)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 294 (454)
..++.+.+ .......|+++++||.| ..+. +....++.++++.+.+.++
T Consensus 119 ------~~~~~i~~-----------------------~~~~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 166 (196)
T 2atv_A 119 ------PLKNILDE-----------------------IKKPKNVTLILVGNKAD--LDHS-RQVSTEEGEKLATELACAF 166 (196)
T ss_dssp ------HHHHHHHH-----------------------HHTTSCCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHHTSEE
T ss_pred ------HHHHHHHH-----------------------hhCCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHhCCeE
Confidence 00111100 11124679999999985 3322 1344567777777778899
Q ss_pred EEechhhhH-Hh
Q 012870 295 VTISAQVEA-EL 305 (454)
Q Consensus 295 v~iSA~~E~-~l 305 (454)
+++||+... ++
T Consensus 167 ~~~Sa~~g~~gi 178 (196)
T 2atv_A 167 YECSACTGEGNI 178 (196)
T ss_dssp EECCTTTCTTCH
T ss_pred EEECCCcCCcCH
Confidence 999999876 55
No 96
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.47 E-value=3.1e-13 Score=119.94 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=89.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+++... ...| |.......+.++ ..++.+|||||...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~-----------------~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYK-----------------NLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEET-----------------TEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEEC-----------------CEEEEEEECCCChh
Confidence 45689999999999999999999965432 2222 334444444443 25699999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
.. ......++.+|++++|+|+++. .+++.+.|+.|...+.. .
T Consensus 64 ~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~ 126 (171)
T 1upt_A 64 IR-------PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT----------S 126 (171)
T ss_dssp GG-------GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC----------H
T ss_pred hh-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC----------H
Confidence 22 2233456789999999998763 23456667777543210 1
Q ss_pred HHHHHHHHH--HHh-cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 193 DQIEKRMEK--LKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 193 ~~l~~~~~~--~~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.+...+.. +.. ..+...+||+++.|+.++++.+.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 127 SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 111111110 000 0112348999999999999999887754
No 97
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.47 E-value=9.4e-14 Score=127.50 Aligned_cols=161 Identities=18% Similarity=0.184 Sum_probs=71.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCccc-ccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT-~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|++......+.++.|+ .+.....+.+++.. ....+.+|||||...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcHH
Confidence 3479999999999999999999965323333444444 35666666665420 013699999999843
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhcccCCCccc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~~~~vSa 213 (454)
. .......++.+|++++|+|+++.. .+.. +..
T Consensus 86 ~-------~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~---------~~~---------------- 117 (208)
T 2yc2_C 86 Y-------KEQISQYWNGVYYAILVFDVSSME----------------SFES---------CKA---------------- 117 (208)
T ss_dssp H-------HHHHSTTCCCCCEEEEEEETTCHH----------------HHHH---------HHH----------------
T ss_pred H-------HHHHHHHHhhCcEEEEEEECCCHH----------------HHHH---------HHH----------------
Confidence 2 222344567899999999974311 1100 000
Q ss_pred cchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCC-CCCCccHHHHHHHHhhcCC
Q 012870 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQS 292 (454)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~-~~~~~~~~~i~~~~~~~~~ 292 (454)
.++.+...... .....|+++++||.| +.+ . .....+++++++.+.+.
T Consensus 118 --------~~~~i~~~~~~---------------------~~~~~piilv~nK~D--l~~~~-~~v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 118 --------WFELLKSARPD---------------------RERPLRAVLVANKTD--LPPQR-HQVRLDMAQDWATTNTL 165 (208)
T ss_dssp --------HHHHHHHHCSC---------------------TTSCCEEEEEEECC----------CCCHHHHHHHHHHTTC
T ss_pred --------HHHHHHHhhcc---------------------cccCCcEEEEEECcc--cchhh-ccCCHHHHHHHHHHcCC
Confidence 11111111000 014789999999985 433 2 13346778888888889
Q ss_pred cEEEechhh-hHHhcCC
Q 012870 293 GRVTISAQV-EAELTEL 308 (454)
Q Consensus 293 ~~v~iSA~~-E~~l~~l 308 (454)
+++++||+. ..++.++
T Consensus 166 ~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 166 DFFDVSANPPGKDADAP 182 (208)
T ss_dssp EEEECCC-------CHH
T ss_pred EEEEeccCCCCcCHHHH
Confidence 999999999 7777544
No 98
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.47 E-value=5e-13 Score=121.26 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=36.4
Q ss_pred ccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCC-cEEEechhhhHHhc
Q 012870 256 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS-GRVTISAQVEAELT 306 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~-~~v~iSA~~E~~l~ 306 (454)
...|+++++||.| +.+ ....+++++++++.+. +++++||+...++.
T Consensus 134 ~~~piilv~NK~D--l~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 180 (198)
T 3t1o_A 134 DDVPIVIQVNKRD--LPD---ALPVEMVRAVVDPEGKFPVLEAVATEGKGVF 180 (198)
T ss_dssp TSSCEEEEEECTT--STT---CCCHHHHHHHHCTTCCSCEEECBGGGTBTHH
T ss_pred CCCCEEEEEEchh--ccc---ccCHHHHHHHHHhcCCceEEEEecCCCcCHH
Confidence 5789999999985 432 3456788888888888 99999999876663
No 99
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=125.27 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=90.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|++.. ....++.||.+.....+.+++. ...+.+|||||...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGR---------------PVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTE---------------EEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCE---------------EEEEEEEECCCCHH
Confidence 456899999999999999999999543 3455666666555555554432 23588999999965
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhh-----
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV----- 188 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~----- 188 (454)
... + ....++++|++++|+|+++. .+++.+.|+.|...+...... +.
T Consensus 81 ~~~----~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~ 152 (201)
T 2q3h_A 81 FDK----L---RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIE-LDKCKEK 152 (201)
T ss_dssp CSS----S---GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHH-HHTTTCC
T ss_pred HHH----H---hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhh-hcccccc
Confidence 433 1 12346789999999998752 345667788876543222110 10
Q ss_pred cccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 189 FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 189 l~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
....+.......... ..+...+||+++.|+.++++.+.+.+.
T Consensus 153 ~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 153 PVPEEAAKLLAEEIK-AASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcC-CcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 011111122111111 112234899999999999998877664
No 100
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.46 E-value=1.3e-13 Score=128.51 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=52.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+++... ....+..+...........+.. ...+.+|||||...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGN--------------VIKFNVWDTAGQEK 73 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSC--------------EEEEEEEEECSGGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCc--------------EEEEEEEecCCchh
Confidence 35689999999999999999999954322 1111111111111111111100 14589999999854
Q ss_pred CCCcccccccccccchhccceEEEEEecc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
... .....++.+|++++|+|++
T Consensus 74 ~~~-------~~~~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 74 KAV-------LKDVYYIGASGAILFFDVT 95 (218)
T ss_dssp TSC-------CCHHHHTTCSEEEEEEETT
T ss_pred hch-------HHHHHhhcCCEEEEEEeCC
Confidence 332 1223467899999999985
No 101
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.46 E-value=2.4e-13 Score=122.41 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=90.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|+++.. ...+..|+.+.....+.+.+. ...+.+|||||.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTE---------------EEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCE---------------EEEEEEEECCCCHhHH
Confidence 47999999999999999999995432 233444444443334444332 2458899999985433
Q ss_pred CcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhH--hh--hccc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL--EL--VFSD 191 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~--el--~l~d 191 (454)
. .....++.+|++++|+|+++. .+++.+.|+.|...+-..... +. ....
T Consensus 68 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 140 (186)
T 1mh1_A 68 R-------LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 140 (186)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred H-------HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCC
Confidence 2 122346789999999998762 234556666664322111100 00 0011
Q ss_pred HHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
.+......... ...+...+||++|.|+.++++.+.+.+.+.+
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 141 YPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 11111111111 0012234899999999999999988886553
No 102
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.46 E-value=1.9e-13 Score=126.72 Aligned_cols=152 Identities=19% Similarity=0.176 Sum_probs=90.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+++.. ...++.++.+.....+.+++. ...+.+|||||...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-C---------------EEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCE---------------EEEEEEEECCCchh
Confidence 3568999999999999999999995433 344555665555555554432 24577999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhH--hhhc--
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL--ELVF-- 189 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~--el~l-- 189 (454)
... .....++.+|++++|+|+++. .+++.+.|+.|...+....+. +...
T Consensus 91 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 4gzl_A 91 YDR-------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
T ss_dssp GTT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred hHH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcccccc
Confidence 322 233456789999999998762 345667777774433221111 0000
Q ss_pred ccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 190 SDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
...+.......... ..+...+||++|.|+.++++.+.+.+
T Consensus 164 v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 164 ITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcC-CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 11111111111110 01123489999999999999887643
No 103
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.45 E-value=1.7e-13 Score=121.30 Aligned_cols=142 Identities=14% Similarity=0.038 Sum_probs=86.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCcc-ccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~-~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
.++|+++|.+|||||||+|+|++.... ...+.+++| .....+.+.+. ...+.+|||||+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNE---------------LHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCe---------------EEEEEEEcCCCchhh
Confidence 479999999999999999999965422 223333333 22233333321 246899999998432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.......++.+|++++|+|+++. .+++.+.|+.|...+..+ ..+.
T Consensus 69 -------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--------~~~~ 133 (170)
T 1z0j_A 69 -------RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV--------MERD 133 (170)
T ss_dssp -------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS--------CHHH
T ss_pred -------hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccccc--------CHHH
Confidence 22233456789999999998762 124555677775432111 0111
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
........ ..+...+||+++.|+.++++.+.+.++
T Consensus 134 ~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 134 AKDYADSI--HAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 11111111 112234899999999999999887764
No 104
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.45 E-value=5.9e-13 Score=134.90 Aligned_cols=148 Identities=25% Similarity=0.252 Sum_probs=98.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.||||||||+|+|++.. ..++++|++|.++..+.+..+ +..+.+|||||+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDG-----------------YFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEET-----------------TEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEec-----------------CceEEEEeCCCccc
Confidence 456899999999999999999999544 678889999999888776554 24699999999965
Q ss_pred CCCccc-ccc-cccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcc
Q 012870 134 GASQGE-GLG-NKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 134 ~~~~~~-~l~-~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
...... ... ..+......+|++++|+|+++. .+++.+.|+.|......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------- 297 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN--------- 297 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH---------
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH---------
Confidence 432111 111 1222333469999999997652 23445556666443211
Q ss_pred cHHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 191 DLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 191 d~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
++.....+. ...+...+||++|.|++++++.+.+.+..
T Consensus 298 ----~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 298 ----IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp ----HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 111111111 11223348999999999999999888753
No 105
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=5.1e-13 Score=121.35 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=87.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+++..... ..|.......+.++ +.++.+|||||..+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT----SPTIGSNVEEIVIN-----------------NTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE----ECCSCSSCEEEEET-----------------TEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC----cCCCccceEEEEEC-----------------CEEEEEEECCCCHh
Confidence 3568999999999999999999995443322 12333344444443 35799999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCc---------------------ceEEecCccCCCChhHHHhHhhhcccH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------------~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
... .....++++|++++|+|+++.. +++.+.|+.|...+. ..
T Consensus 73 ~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~ 135 (187)
T 1zj6_A 73 LRS-------SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM----------TV 135 (187)
T ss_dssp -CG-------GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC----------CH
T ss_pred HHH-------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC----------CH
Confidence 322 2234467899999999987632 345666777754321 11
Q ss_pred HHHHHHHHHH--Hh-cccCCCccccchHHHHHHHHHHHHhhhCCCC
Q 012870 193 DQIEKRMEKL--KK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (454)
Q Consensus 193 ~~l~~~~~~~--~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~ 235 (454)
+.+...+... .. ..+...+||+++.|+.++++.+.+.+...++
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 136 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred HHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 1111111110 00 0112348999999999999999998876543
No 106
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=122.93 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. . ...++.|+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR-F-ISEYDPNLEDTYSSEETVDHQ---------------PVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS-C-CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC-C-CcccCCCccceeeEEEEECCE---------------EEEEEEEECCCCCcc
Confidence 34899999999999999999999654 2 244444444333333333321 246889999998643
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. + ...++.+|++++|+|++
T Consensus 83 ~~----~----~~~~~~~~~~ilv~d~~ 102 (187)
T 3c5c_A 83 RN----C----ERYLNWAHAFLVVYSVD 102 (187)
T ss_dssp CC----T----HHHHTTCSEEEEEEETT
T ss_pred hh----H----HHHHhhCCEEEEEEECC
Confidence 32 2 23567899999999974
No 107
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.45 E-value=5.4e-13 Score=123.66 Aligned_cols=154 Identities=18% Similarity=0.122 Sum_probs=93.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. . ..+++.|+.+.....+.+++. ...+.+|||||....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK-F-PTDYIPTVFDNFSANVAVDGQ---------------IVNLGLWDTAGQEDY 70 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCSSCCCEEEEEECSSC---------------EEEEEEECCCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CccCCCccceeEEEEEEECCE---------------EEEEEEEECCCcHHH
Confidence 34799999999999999999999544 2 344455555554444444432 246999999998654
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.. + ....++++|++++|+|+++. .+++.+.|+.|...+......+......+.
T Consensus 71 ~~----~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~ 143 (212)
T 2j0v_A 71 SR----L---RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQ 143 (212)
T ss_dssp CC---------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHH
T ss_pred HH----H---HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHH
Confidence 32 1 12346789999999998762 234556666664332221111000011111
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.......+. ..+...+||+++.|+.++++.+.+.+...
T Consensus 144 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 144 GEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcC-CceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 222111111 11233489999999999999988877643
No 108
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.44 E-value=4.7e-13 Score=121.16 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=89.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.||||||||+|+|+++. .....| |.......+.++ +.++.+|||||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~-----------------~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTISP--TLGFNIKTLEHR-----------------GFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC--CSSEEEEEEEET-----------------TEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc--cCccceEEEEEC-----------------CEEEEEEECCCCHh
Confidence 356899999999999999999999655 222222 334444445443 35699999999853
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~ 192 (454)
.. ......++++|++++|+|+++. .+++.+.|+.|...+.. .
T Consensus 75 ~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~ 137 (186)
T 1ksh_A 75 LR-------SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS----------C 137 (186)
T ss_dssp HH-------TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC----------H
T ss_pred HH-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC----------H
Confidence 22 2233456789999999998763 23456667777543211 1
Q ss_pred HHHHHHHHH--HH-hcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 193 DQIEKRMEK--LK-KGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 193 ~~l~~~~~~--~~-~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
+.+...+.. +. ...+...+||+++.|+.++++.+.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 111111110 00 001123489999999999999998888764
No 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.44 E-value=2.3e-13 Score=125.75 Aligned_cols=138 Identities=16% Similarity=0.261 Sum_probs=84.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+++|.||||||||+|+|+++...... .|..++.+.+.+++ .++.+|||||....
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELTIAG-----------------MTFTTFDLGGHIQA 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC----------CCCCCSCEEEEETT-----------------EEEEEEEECC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccC----CCCCceeEEEEECC-----------------EEEEEEECCCcHhh
Confidence 4579999999999999999999965433222 34455556665553 56999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .+...++.+|++++|+|+++. .+++.+.|+.|..... ..+
T Consensus 83 ~~-------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~ 145 (198)
T 1f6b_A 83 RR-------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI----------SEE 145 (198)
T ss_dssp CC-------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC----------CHH
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC----------CHH
Confidence 32 223446789999999998763 2456667777754311 111
Q ss_pred HHHHHHHHHH---------------hcccCCCccccchHHHHHHHHHHHHhh
Q 012870 194 QIEKRMEKLK---------------KGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 194 ~l~~~~~~~~---------------~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
.+...+.... ...+...+||++|.|+.++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1222111100 001122389999999999999886654
No 110
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.44 E-value=5.4e-13 Score=121.22 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=89.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++... ...| |.......+.++ ..++.+|||||..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~-----------------~~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--TTVP--TVGVNLETLQYK-----------------NISFEVWDLGGQTGV 79 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--EECS--STTCCEEEEEET-----------------TEEEEEEEECCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--CcCC--CCceEEEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 4689999999999999999999855433 2233 334444444443 357999999998643
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++++|++++|+|+++. .+++.+.|+.|...+.. .+
T Consensus 80 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~ 142 (189)
T 2x77_A 80 RP-------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS----------EA 142 (189)
T ss_dssp CC-------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC----------HH
T ss_pred HH-------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC----------HH
Confidence 32 122346789999999998763 23456667777543210 01
Q ss_pred HHHHHHHH--HHh-cccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 194 QIEKRMEK--LKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 194 ~l~~~~~~--~~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.+...+.. ... ..+...+||+++.|+.++++.+.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 11111110 000 00123489999999999999998877643
No 111
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.44 E-value=6.1e-13 Score=121.57 Aligned_cols=149 Identities=18% Similarity=0.106 Sum_probs=92.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++... ...++.|+.+.....+.+++. ...+.+|||||....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNE---------------EFILHLWDTAGQEEY 84 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCE---------------EEEEEEEECCCcHHH
Confidence 458999999999999999999996542 233344443333334444332 245799999997443
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.. .....++++|++++|+|+++. .+++.+.|+.|...+-. .....+.
T Consensus 85 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~~~ 151 (194)
T 3reg_A 85 DR-------LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS------DDVTKQE 151 (194)
T ss_dssp TT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT------TCCCHHH
T ss_pred HH-------HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC------CcccHHH
Confidence 22 223446789999999998762 34666778877543210 0011111
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
......... ......+||+++.|+.++++.+.+.+...+
T Consensus 152 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 152 GDDLCQKLG-CVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHT-CSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred HHHHHHhcC-CCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 222222211 111234899999999999999988776543
No 112
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=9.4e-13 Score=120.15 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=93.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. . ..+++.|+.+.....+.+++. ...+.+|||||..+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA-F-PEEYVPTVFDHYAVSVTVGGK---------------QYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS-C-CCSCCCSSCCCEEEEEESSSC---------------EEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCcccceeEEEEEECCE---------------EEEEEEEECCCCcch
Confidence 34799999999999999999999653 2 344555555554444444432 146899999998654
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhh-----c
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV-----F 189 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~-----l 189 (454)
.. + ....++++|++++|+|+++. .+++.+.|+.|...+....+. +. .
T Consensus 80 ~~----~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~ 151 (194)
T 2atx_A 80 DR----L---RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLAR-LNDMKEKP 151 (194)
T ss_dssp TT----T---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHH-HTTTTCCC
T ss_pred hH----H---HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhh-cccccCcc
Confidence 32 1 22346789999999998652 346777888886544322111 10 1
Q ss_pred ccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 190 SDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
...+.......... ..+...+||+++.|+.++++.+.+.+
T Consensus 152 v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 152 ICVEQGQKLAKEIG-ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CCHHHHHHHHHHHT-CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcC-CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11122222111111 11233489999999999999887765
No 113
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.43 E-value=5.5e-13 Score=124.76 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=91.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+++.. . ..++.|+.+.....+.+++. ...+.+|||||...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY-P-ETYVPTVFENYTACLETEEQ---------------RVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEEC--C---------------EEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC-C-CCcCCeeeeeEEEEEEECCE---------------EEEEEEEECCCCHh
Confidence 3568999999999999999999996543 2 33333333333333333322 24689999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHh----hhc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLE----LVF 189 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~e----l~l 189 (454)
... + ....++++|++++|+|+++. .+++.+.|+.|...+......- ...
T Consensus 88 ~~~----~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 160 (214)
T 3q3j_B 88 YDN----V---RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAP 160 (214)
T ss_dssp GTT----T---GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCC
T ss_pred HHH----H---HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCc
Confidence 332 2 22346789999999998763 2466777888865443221110 001
Q ss_pred ccHHHHHHHHHHHHhcccCCCccccchHH-HHHHHHHHHHhhhCC
Q 012870 190 SDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMDG 233 (454)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~vSak~~~~-~~~ll~~i~~~L~~~ 233 (454)
...+.......... ..+...+||+++.| +.++++.+.+.+...
T Consensus 161 v~~~~~~~~~~~~~-~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 161 ISYEQGCAIAKQLG-AEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcC-CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 11222222222111 11223489999998 999999998877543
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.3e-12 Score=119.22 Aligned_cols=83 Identities=19% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccce-eeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~-~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+|+++... ....| |.... ...+..+.. ...+.+|||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-DTYIP--TIEDTYRQVISCDKS---------------VCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC-CTTSC--CCCEEEEEEEEETTE---------------EEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC-CcccC--ccccceeEEEEECCE---------------EEEEEEEeCCChHH
Confidence 4589999999999999999999964432 22222 22111 112222211 24689999999753
Q ss_pred CCCcccccccccccchhccceEEEEEecc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.. ......++.+|++++|+|++
T Consensus 69 ~~-------~~~~~~~~~~d~~i~v~d~~ 90 (199)
T 2gf0_A 69 FP-------AMQRLSISKGHAFILVFSVT 90 (199)
T ss_dssp CH-------HHHHHHHHHCSEEEEEEETT
T ss_pred hH-------HHHHHhhccCCEEEEEEECc
Confidence 22 12233467899999999975
No 115
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.43 E-value=6.6e-14 Score=128.89 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=90.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+ .........|++|.+.....+.+++.. ..+.+|||||....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 95 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA-DDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERF 95 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB-CCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHh-cCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhH
Confidence 35899999999999999999999 445555566777777777777665422 46999999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.. .....++.+|++++|+|+++. .+++.+.|+.|...+-.+ .......
T Consensus 96 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v-----~~~~~~~ 163 (199)
T 3l0i_B 96 RT-------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV-----DYTTAKE 163 (199)
T ss_dssp CC-------CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCC-----CSCC-CH
T ss_pred HH-------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccC-----CHHHHHH
Confidence 32 233456789999999998763 245667788885422111 0001111
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+.+ .. ..+...+||+++.|+.++++.+.+.+.
T Consensus 164 ~~~---~~--~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 164 FAD---SL--GIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHH---TT--TCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HHH---Hc--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111 11 123345899999999999998877664
No 116
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.42 E-value=4e-13 Score=121.57 Aligned_cols=136 Identities=19% Similarity=0.187 Sum_probs=84.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++......+.++ .....+.+. +..+.+|||||..+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVIN-----------------NTRFLMWDIGGQESL 78 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEET-----------------TEEEEEEEESSSGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 45899999999999999999999654433332222 223334333 356999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCc---------------------ceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~---------------------~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++++|++++|+|+++.. +++.+.|+.|...+. ..+
T Consensus 79 ~~-------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~ 141 (181)
T 2h17_A 79 RS-------SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM----------TVA 141 (181)
T ss_dssp TC-------GGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------CHH
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC----------CHH
Confidence 22 2344568899999999987632 345566776654321 011
Q ss_pred HHHHHHHHHHhcc----cCCCccccchHHHHHHHHHHHHh
Q 012870 194 QIEKRMEKLKKGK----AKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 194 ~l~~~~~~~~~~~----~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
.+...+. ..... +...+||+++.|+.++++.+.+.
T Consensus 142 ~i~~~~~-~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 142 EISQFLK-LTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHHTT-GGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHHhC-cccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 1111111 00000 12348999999999999887653
No 117
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.42 E-value=9.9e-13 Score=119.94 Aligned_cols=142 Identities=17% Similarity=0.192 Sum_probs=87.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.....+...| |.......+... ...+.+|||||....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKG-----------------RVAFTVFDMGGAKKF 76 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEET-----------------TEEEEEEEECCSGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeC-----------------CEEEEEEECCCCHhH
Confidence 4579999999999999999999965543322222 333333333322 357999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC----------------------------cceEEecCccCCCChhHHHhHh
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------------------NDIVHVNGKVDPKSDVDVINLE 186 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------------------~~v~~v~~~~dp~~di~~l~~e 186 (454)
.. .....++.+|++++|+|+++. .+++.+.|+.|...+..
T Consensus 77 ~~-------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----- 144 (199)
T 4bas_A 77 RG-------LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT----- 144 (199)
T ss_dssp GG-------GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-----
T ss_pred HH-------HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-----
Confidence 22 223446789999999998763 23556677777543311
Q ss_pred hhcccHHHHHHHHH--HH-H-hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 187 LVFSDLDQIEKRME--KL-K-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 187 l~l~d~~~l~~~~~--~~-~-~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+.+...+. .+ . ...+...+||+++.|+.++++.+.+.+..
T Consensus 145 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 145 -----AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp -----HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 111111111 11 1 11112348999999999999998887753
No 118
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.42 E-value=7.1e-13 Score=120.72 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=89.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++....... ...|.......+.+++ ..+.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSS-----------------LSFTVFDMSGQGRY 80 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSS-----------------CEEEEEEECCSTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECC-----------------EEEEEEECCCCHHH
Confidence 4589999999999999999999954422322 2345555555555542 56999999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC-----------------------cceEEecCccCCCChhHHHhHhhhccc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~-----------------------~~v~~v~~~~dp~~di~~l~~el~l~d 191 (454)
. ......++++|++++|+|+++. .+++.+.|+.|...+. .
T Consensus 81 ~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~ 143 (190)
T 2h57_A 81 R-------NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV----------T 143 (190)
T ss_dssp G-------GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC----------C
T ss_pred H-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC----------C
Confidence 2 2233456889999999998652 2355666777754321 1
Q ss_pred HHHHHHHHHHHHhc----ccCCCccccchHHHHHHHHHHHHhhh
Q 012870 192 LDQIEKRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 192 ~~~l~~~~~~~~~~----~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+.+...+. +... .+...+||+++.|+.++++.+.+.+.
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 144 SVKVSQLLC-LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp HHHHHHHHT-GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 111111111 1111 11234899999999999999888764
No 119
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.42 E-value=4.6e-13 Score=122.70 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=87.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
...+|+++|.||||||||+|+|+++..... ..|..+..+.+.+++ .++.+|||||....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQA 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETT-----------------EEEEEEECCCSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECC-----------------EEEEEEECCCCHHH
Confidence 347999999999999999999996654322 245556666666553 56999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++++|++++|+|+++. .+++.+.|+.|..... ..+
T Consensus 81 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~ 143 (190)
T 1m2o_B 81 RR-------LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV----------SEA 143 (190)
T ss_dssp TT-------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC----------CHH
T ss_pred HH-------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC----------CHH
Confidence 32 123346789999999998763 2356667777754311 111
Q ss_pred HHHHHHHHH--------H--hcccCCCccccchHHHHHHHHHHHHh
Q 012870 194 QIEKRMEKL--------K--KGKAKDSQSKLKEDAEKAALEKIQQA 229 (454)
Q Consensus 194 ~l~~~~~~~--------~--~~~~~~~vSak~~~~~~~ll~~i~~~ 229 (454)
.+.+.+... . ...+..++||+++.|+.++++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp HHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 111111100 0 00112348999999999999887654
No 120
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.42 E-value=1.2e-12 Score=129.31 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=58.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc-----cccCCCC---ccccccee---------eee-eeCCCccc---------
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-----AQAANFP---FCTIEPNV---------GIV-AVPDPRLH--------- 107 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~-----~~vs~~p---~tT~~~~~---------~~~-~~~d~r~~--------- 107 (454)
..++|+|+|.||||||||+|+|+|... ..++..| .+|..+.. +.+ ..+.....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457999999999999999999997765 3344455 33332210 000 00000000
Q ss_pred -----hh-------------cccccCccccCceeEEEecCCccCCCC------cccccccccccchhccceEEEEEecc
Q 012870 108 -----VL-------------SGLSKSQKAVPASVEFVDIAGLVKGAS------QGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 108 -----~l-------------~~~~~~~~~~~~~i~lvDtpGl~~~~~------~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.+ .+++.|. ..++.||||||+.+... ..+.+...+...++++|++++|+|+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPH---VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETT---SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEES
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCC---CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 00 0012221 24799999999975221 11224445567789999999999974
No 121
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.42 E-value=7.4e-13 Score=139.56 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=94.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|||.||||||||+|+|++... +.. ..|++++...+... +.++.+|||||....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~~--~~T~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS--VTT--IPTVGFNVETVTYK-----------------NVKFNVWDVGGQDKI 379 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC--CCC--CCCSSEEEEEEESS-----------------SCEEEEEEECCCGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC--CCc--CCccceeEEEEEeC-----------------CEEEEEEECCCcHHH
Confidence 358999999999999999999997652 333 34777777777664 357999999997443
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
. ..+...++++|++|+|+|+++. .+++.+.|+.|..... +.+
T Consensus 380 ~-------~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----------~~~ 442 (497)
T 3lvq_E 380 R-------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM----------KPH 442 (497)
T ss_dssp S-------GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC----------CHH
T ss_pred H-------HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC----------CHH
Confidence 2 2345567899999999998763 2456677888754321 111
Q ss_pred HHHHHHHHHH---hcccCCCccccchHHHHHHHHHHHHhhhCC
Q 012870 194 QIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (454)
Q Consensus 194 ~l~~~~~~~~---~~~~~~~vSak~~~~~~~ll~~i~~~L~~~ 233 (454)
.+.+.+.... ...+...+||++|.|+.++++.|.+.+...
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 443 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred HHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 1111111000 000123489999999999999999888654
No 122
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.42 E-value=4.6e-13 Score=120.25 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=80.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+++++. . ..+++.|+.+.....+.+.+. ...+.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT-F-PTDYVPTVFDNFSANVVVNGA---------------TVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC-C-C----------CBCCCC----------------------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCeeeeeEEEEEEECCE---------------EEEEEEEECCCChhh
Confidence 45899999999999999999999554 2 233444443333222222221 245789999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhh--hcccH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLEL--VFSDL 192 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el--~l~d~ 192 (454)
.. .....++++|++++|+|+++. .+++.+.|+.|...+........ .....
T Consensus 70 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~ 142 (182)
T 3bwd_D 70 NR-------LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITT 142 (182)
T ss_dssp TT-------TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCH
T ss_pred hh-------hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCH
Confidence 32 223446789999999998752 23455666666433222110000 00011
Q ss_pred HHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+.......... ..+...+||+++.|+.++++.+.+.+.
T Consensus 143 ~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 143 VQGEELKKLIG-APAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 11111111111 112234899999999999998877653
No 123
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=5.1e-13 Score=122.87 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=86.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.+|||||||+|+|+++.. .....|..+.+.....+.+++. ...+.+|||||...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEF-RENISATLGVDFQMKTLIVDGE---------------RTVLQLWDTAGQER 89 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCC-C----------CEEEEEEETTE---------------EEEEEEEECTTCTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCC-CccCCCCccceeEEEEEEECCE---------------EEEEEEEECCCCcc
Confidence 3468999999999999999999996542 2222333333344444444432 24589999999743
Q ss_pred CCCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
. .......++.+|++++|+|+++. .+++.+.|+.|...+... .+......+
T Consensus 90 ~-------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~v~~~ 160 (199)
T 2p5s_A 90 F-------RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAAT--EGQKCVPGH 160 (199)
T ss_dssp C-------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHH--TTCCCCCHH
T ss_pred h-------hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc--ccccccCHH
Confidence 2 22334557889999999998752 245667777775321100 000111111
Q ss_pred HHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 194 ~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
......... ..+...+||+++.|+.++++.+.+.+.
T Consensus 161 ~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 161 FGEKLAMTY--GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112211111 112334899999999999998877664
No 124
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.41 E-value=9.7e-13 Score=116.10 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=85.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|+|+++... ...| |.......+... +..+.+|||||....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~-- 57 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI-- 57 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECS-----------------SCEEEEEECCCCGGG--
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEEC-----------------CEEEEEEEcCCChhh--
Confidence 48999999999999999999965432 2333 444444444333 357999999998432
Q ss_pred cccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHHH
Q 012870 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (454)
Q Consensus 137 ~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l 195 (454)
.......++++|++++|+|+++. .+++.+.|+.|...+.. .+.+
T Consensus 58 -----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~ 122 (164)
T 1r8s_A 58 -----RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN----------AAEI 122 (164)
T ss_dssp -----HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC----------HHHH
T ss_pred -----HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC----------HHHH
Confidence 12223346889999999998763 23556667777543210 0111
Q ss_pred HHHHHHHHhc----ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 196 EKRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 196 ~~~~~~~~~~----~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..... .... .+...+||+++.|+.++++.+.+.+..
T Consensus 123 ~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 123 TDKLG-LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHTT-GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHhC-cccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 11111 0000 012248999999999999998877653
No 125
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.41 E-value=5.5e-13 Score=122.69 Aligned_cols=145 Identities=18% Similarity=0.108 Sum_probs=88.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|++||.||||||||+|+++|.....+++++.++.+.....+.+++.. .++.+|||+|.....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGEN 70 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCcchh
Confidence 47999999999999999999997555555666777766655666665422 357899999974311
Q ss_pred CcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
..+. ...++.+|++++|+|+++. .+++.+.|+.|...+-.+ ..+.
T Consensus 71 ---~~~~---~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v--------~~~~ 136 (192)
T 2cjw_A 71 ---EWLH---DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV--------SVSE 136 (192)
T ss_dssp ---CTTG---GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS--------CHHH
T ss_pred ---hhHH---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccc--------cHHH
Confidence 1121 1235679999999998651 235666677774322111 1110
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
. ..+... ...+...+||++|.|+.++++.+.+.+.
T Consensus 137 ~-~~~a~~-~~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 137 G-RAXAVV-FDXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp H-HHHHHH-TTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred H-HHHHHH-hCCceEEeccccCCCHHHHHHHHHHHHH
Confidence 0 111110 0112234899999999999998877664
No 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.40 E-value=6.1e-13 Score=120.28 Aligned_cols=143 Identities=20% Similarity=0.119 Sum_probs=90.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (454)
++|+++|.+|||||||+|+|+ +..+.++..|++|.++....+ . .+.+|||||+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~-~~~~~~~~~~~~t~~~~~~~~--~-------------------~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLT-GKKVRRGKRPGVTRKIIEIEW--K-------------------NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH-SCCCSSSSSTTCTTSCEEEEE--T-------------------TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHh-CcCCccCCCCCccceeEEEec--C-------------------CEEEEECCCcccccc
Confidence 689999999999999999999 455778888988877654433 1 489999999743221
Q ss_pred cc----c---ccccccccc-hhccceEEEEEeccC---------------------------CcceEEecCccCCCChhH
Q 012870 137 QG----E---GLGNKFLSH-IREVDSILQVVRCFE---------------------------DNDIVHVNGKVDPKSDVD 181 (454)
Q Consensus 137 ~~----~---~l~~~fl~~-ir~aD~il~VvD~~~---------------------------~~~v~~v~~~~dp~~di~ 181 (454)
.. + .+...++.. ...+++++.|+|... +.+++.+.|+.|...+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ 139 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHH
Confidence 10 1 111223333 556778888888642 234566677777543320
Q ss_pred HHhHhhhcccHHHHHHHHHHHHhcc-----cCCCccccchHHHHHHHHHHHHhhhC
Q 012870 182 VINLELVFSDLDQIEKRMEKLKKGK-----AKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 182 ~l~~el~l~d~~~l~~~~~~~~~~~-----~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+..+.....+.... +..++||++|.|+.++++.+.+.+.+
T Consensus 140 -----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 140 -----------EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp -----------HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 01111111121110 11348999999999999999887764
No 127
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=1.3e-12 Score=120.97 Aligned_cols=151 Identities=18% Similarity=0.119 Sum_probs=87.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++.... . .+..++.+.....+.+++. ...+.+|||||.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-E-VYVPTVFENYVADIEVDGK---------------QVELALWDTAGQEDYD 87 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTE---------------EEEEEEEECTTCTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-C-cCCCcccceEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 469999999999999999999965432 2 2223333333333434321 2468999999985433
Q ss_pred CcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhhh-----cc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV-----FS 190 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el~-----l~ 190 (454)
. .....++.+|++++|+|+++. .+++.+.|+.|...+.... .++. ..
T Consensus 88 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~v 159 (207)
T 2fv8_A 88 R-------LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVR-TELARMKQEPV 159 (207)
T ss_dssp T-------TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHH-HHHHHTTCCCC
T ss_pred H-------HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccch-hhhhhcccCCC
Confidence 2 222346789999999998762 3456777888755432211 1111 01
Q ss_pred cHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..+.......... ..+...+||+++.|++++++.+.+.+..
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 160 RTDDGRAMAVRIQ-AYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcC-CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111111111111 0012348999999999999998887653
No 128
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=6.7e-13 Score=119.47 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=84.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++...... .|.......+.++ +.++.+|||||....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYK-----------------NLKLNVWDLGGQTSI 75 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEET-----------------TEEEEEEEEC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC----CcCccceEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 5689999999999999999999954432222 2333333444443 256999999999653
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++++|++++|+|+++. .+++.+.|+.|...+. ..+
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~ 138 (183)
T 1moz_A 76 RP-------YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL----------SAS 138 (183)
T ss_dssp CT-------TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC----------CHH
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC----------CHH
Confidence 32 223446789999999998653 2345666777744321 011
Q ss_pred HHHHHHHHH--H-hcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 194 QIEKRMEKL--K-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 194 ~l~~~~~~~--~-~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+...+... . ...+...+||+++.|+.++++.+.+.+.
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 139 EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 111111100 0 0001234899999999999999887764
No 129
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.39 E-value=1.2e-12 Score=127.50 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=74.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCC------cccccceeeeeeeCCCccchhcccccCccccCceeEEEec
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDt 128 (454)
..++|++||.||+|||||+|+|++....... +| ..|.........+.... ...++.+|||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~l~liDT 72 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGG-------------VQLLLTIVDT 72 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC---------------CCEEEEEEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccC-CCCcccccCCceEEEEEEEEEecCC-------------eEEEEEEEEC
Confidence 4589999999999999999999966554433 32 33444443333332110 0236999999
Q ss_pred CCccCCCCccc---ccc----cccccchh-------------ccceEEEEEeccC----------------CcceEEecC
Q 012870 129 AGLVKGASQGE---GLG----NKFLSHIR-------------EVDSILQVVRCFE----------------DNDIVHVNG 172 (454)
Q Consensus 129 pGl~~~~~~~~---~l~----~~fl~~ir-------------~aD~il~VvD~~~----------------~~~v~~v~~ 172 (454)
||+........ .+. .+|...++ ++|+++++++.+. ..+++.|.|
T Consensus 73 pG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~n 152 (274)
T 3t5d_A 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIA 152 (274)
T ss_dssp CCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEES
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEe
Confidence 99954322111 111 11122222 3789999997554 235667777
Q ss_pred ccCCCChhHHHhHhhhcccHHHHHHHHHHHHh-cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 173 ~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.|....-+.- . ......+.+.. ..+..++||+++.++.++.+.+.+.+|-
T Consensus 153 K~D~~~~~e~~-~--------~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 153 KADTLTPEECQ-Q--------FKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp SGGGSCHHHHH-H--------HHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred ccCCCCHHHHH-H--------HHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 77754321110 0 00111112211 1223447899999998888888877753
No 130
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.39 E-value=1.2e-12 Score=119.27 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=86.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++... ....| |.......+... ...+.+|||||..+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP--TVGFNMRKITKG-----------------NVTIKLWDIGGQPRF 80 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC--CCSEEEEEEEET-----------------TEEEEEEEECCSHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC--CCceeEEEEEeC-----------------CEEEEEEECCCCHhH
Confidence 4589999999999999999999965432 22222 333333333322 357999999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
. ......++++|++++|+|+++. .+++.+.|+.|...+.. .+
T Consensus 81 ~-------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~ 143 (188)
T 1zd9_A 81 R-------SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD----------EK 143 (188)
T ss_dssp H-------TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC----------HH
T ss_pred H-------HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC----------HH
Confidence 2 2223446889999999998752 23556667777543210 11
Q ss_pred HHHHHHHHH--Hh-cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 194 QIEKRMEKL--KK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 194 ~l~~~~~~~--~~-~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+...+... .. ..+...+||+++.|+.++++.+.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 144 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred HHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 111111100 00 0011248999999999999999887754
No 131
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.39 E-value=8.7e-12 Score=113.69 Aligned_cols=78 Identities=21% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|+|.+|||||||+|+++++.. .....| |.+.....+.+++. ...+.+|||||....
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~~--t~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 80 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEESP--EGGRFKKEIVVDGQ---------------SYLLLIRDEGGPPEL 80 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCCT--TCEEEEEEEEETTE---------------EEEEEEEECSSSCCH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC--CcceEEEEEEECCE---------------EEEEEEEECCCChhh
Confidence 458999999999999999999995443 222222 33333344444432 245888999998432
Q ss_pred CCcccccccccccchhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. .++.+|++++|+|++
T Consensus 81 ~------------~~~~~~~~i~v~d~~ 96 (184)
T 3ihw_A 81 Q------------FAAWVDAVVFVFSLE 96 (184)
T ss_dssp H------------HHHHCSEEEEEEETT
T ss_pred h------------eecCCCEEEEEEECc
Confidence 1 467899999999975
No 132
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.39 E-value=1.7e-12 Score=119.70 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=89.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+++|.+|||||||+|+|++... .....|.++.+. ...+.+++. ...+.+|||||.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY-IADIEVDGK---------------QVELALWDTAGQEDYD 87 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCC-EEEEEETTE---------------EEEEEEECCCCSGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceE-EEEEEECCE---------------EEEEEEEECCCchhHH
Confidence 47999999999999999999995543 333334333332 233444321 2468999999975432
Q ss_pred CcccccccccccchhccceEEEEEeccC--------------------CcceEEecCccCCCChhHHHhHhhh-----cc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELV-----FS 190 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~~--------------------~~~v~~v~~~~dp~~di~~l~~el~-----l~ 190 (454)
. .....++.+|++++|+|+.+ +.+++.+.|+.|...+..... ++. ..
T Consensus 88 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~v 159 (201)
T 2gco_A 88 R-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRR-ELAKMKQEPV 159 (201)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHH-HHHTTTCCCC
T ss_pred H-------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchh-hhcccccCcC
Confidence 2 22234678999999999875 234677778888654322211 111 01
Q ss_pred cHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhh
Q 012870 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
..+........+. ..+...+||+++.|+.++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 160 RSEEGRDMANRIS-AFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC-CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111111111111 11223489999999999999887654
No 133
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.38 E-value=1.4e-12 Score=118.38 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=85.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++.......+ |.......+.++ +..+.+|||||....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~-----------------~~~l~i~Dt~G~~~~ 73 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQ-----------------GFKLNVWDIGGQRKI 73 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEET-----------------TEEEEEEECSSCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 46899999999999999999999654332222 222222233333 256999999997432
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.......++.+|++++|+|+++. .+++.+.|+.|...... .+
T Consensus 74 -------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~ 136 (181)
T 1fzq_A 74 -------RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP----------AS 136 (181)
T ss_dssp -------HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC----------HH
T ss_pred -------HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC----------HH
Confidence 22234556889999999998763 23455667766433211 01
Q ss_pred HHHHHHHHHHhc----ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 194 QIEKRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 194 ~l~~~~~~~~~~----~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+...+. +... .+...+||++|.|+.++++.+.+.+.+
T Consensus 137 ~~~~~~~-~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 137 EIAEGLN-LHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHTT-GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred HHHHHhC-chhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 1111110 0000 112348999999999999998877653
No 134
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.38 E-value=9.8e-13 Score=122.80 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. .. ..++.|+.+.....+.+++. ...+.+|||||....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA-FP-ESYTPTVFERYMVNLQVKGK---------------PVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTE---------------EEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC-CC-CCCCCccceeEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 45899999999999999999999543 22 33333444443444444332 246899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhH--hh--hcc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL--EL--VFS 190 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~--el--~l~ 190 (454)
.. + ....++++|++++|+|+++. .+++.+.|+.|...+...... +. ...
T Consensus 96 ~~----~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 168 (214)
T 2j1l_A 96 DR----L---RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPV 168 (214)
T ss_dssp ----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCC
T ss_pred hH----H---HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcc
Confidence 32 1 12336789999999998752 246677788886543322111 00 011
Q ss_pred cHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..+........+. ..+...+||++|.|+.++++.+.+.+.+
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 169 TYHRGQEMARSVG-AVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1111111111111 1122348999999999999988776643
No 135
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.38 E-value=1.4e-12 Score=119.70 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++... ... .|+......+... ...+.+|||||....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~--~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYK-----------------NICFTVWDVGGQDKI 86 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE--EEE--EETTEEEEEEEET-----------------TEEEEEEECC-----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc--ccC--CcCceeEEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 4589999999999999999999954432 222 2444444444433 357999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++++|++++|+|+++. .+++.+.|+.|...+.. .+
T Consensus 87 ~~-------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~ 149 (192)
T 2b6h_A 87 RP-------LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP----------VS 149 (192)
T ss_dssp CT-------THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC----------HH
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC----------HH
Confidence 22 223346789999999998763 23566667777543210 11
Q ss_pred HHHHHHHHH--H-hcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 194 QIEKRMEKL--K-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 194 ~l~~~~~~~--~-~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+...+... . ...+...+||+++.|+.++++.+.+.+.
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 150 ELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 111111100 0 0001234899999999999999887664
No 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=7.7e-13 Score=124.52 Aligned_cols=146 Identities=18% Similarity=0.090 Sum_probs=90.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..+||+|||.||||||||+|+++|.....+..+|.++.+.....+.+++.. .++.+|||+|....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~~~~ 100 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE 100 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTTTHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCCcch
Confidence 358999999999999999999996555555666766666655556555422 45789999997321
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
...+. ....+.+|++++|+|+++. .+++.+.|+.|...+..+ ..+
T Consensus 101 ---~~~l~---~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v--------~~~ 166 (211)
T 2g3y_A 101 ---NEWLH---DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV--------SVS 166 (211)
T ss_dssp ---HHHHH---HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS--------CHH
T ss_pred ---hhhHH---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE--------eHH
Confidence 01111 1235678999999998651 245667777775322111 011
Q ss_pred HHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 194 ~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
... .+.... ..+...+||++|.|+.++++.+.+.+.
T Consensus 167 e~~-~~a~~~-~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 167 EGR-ACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHH-HHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHH-HHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 101 111100 112334899999999999998877664
No 137
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.36 E-value=4e-12 Score=115.29 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=87.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++.. .....| |+.......+.+.+. ..++.+|||||....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 68 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEEEEEEEECSSC---------------EEEEEEEEECCSGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-ccceeEEEEEEECCE---------------EEEEEEEECCCChhh
Confidence 458999999999999999999996433 222222 222222223333321 246899999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhh-----hc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLEL-----VF 189 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el-----~l 189 (454)
.. + ....++.+|++++|+|+++. .+++.+.|+.|...+...+.+ + ..
T Consensus 69 ~~----~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~ 140 (184)
T 1m7b_A 69 DN----V---RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVE-LSNHRQTP 140 (184)
T ss_dssp TT----T---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHH-HHTTTCCC
T ss_pred hh----h---HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhh-hhhcccCC
Confidence 22 1 12346789999999998752 245667788776543222111 1 01
Q ss_pred ccHHHHHHHHHHHHhcccCCCcccc-chHHHHHHHHHHHHhh
Q 012870 190 SDLDQIEKRMEKLKKGKAKDSQSKL-KEDAEKAALEKIQQAL 230 (454)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~vSak-~~~~~~~ll~~i~~~L 230 (454)
...+........+. ..+...+||+ ++.|+.++++.+.+.+
T Consensus 141 v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 141 VSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 11222222211111 1123348998 6899999998887654
No 138
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.35 E-value=2e-12 Score=136.34 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=61.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCc------------------------------cccCCCCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK------------------------------AQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~------------------------------~~vs~~p~tT~~~~~~~~~~~d 103 (454)
+..++|+++|.+|+|||||+|+|++... ......+++|++.....+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 4568999999999999999999985411 112233466666655555443
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
..++.||||||..+ +.......++.||++++|+|+.+
T Consensus 110 ----------------~~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~ 146 (483)
T 3p26_A 110 ----------------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 146 (483)
T ss_dssp ----------------SCEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC
T ss_pred ----------------CceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCC
Confidence 35799999999843 44455667889999999999865
No 139
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.35 E-value=4.2e-13 Score=135.90 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=78.0
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc------CCccccCCCCcccc-----------------cceeeeeeeC-------
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTI-----------------EPNVGIVAVP------- 102 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg------~~~~~vs~~p~tT~-----------------~~~~~~~~~~------- 102 (454)
....+.|+|+|+||||||||+|+|++ ...+..+..|+++. ++....-..+
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC--------
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 34578999999999999999999996 23334444444331 0100000000
Q ss_pred --CCccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChh
Q 012870 103 --DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180 (454)
Q Consensus 103 --d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di 180 (454)
....+.+..+ . .-+.++.|+||||+.... ......+|++++|+|++............-...++
T Consensus 151 ~tr~~~~~~~~~-~---~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~i 216 (349)
T 2www_A 151 VTRTTNEAILLC-E---GAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADL 216 (349)
T ss_dssp -CTTHHHHHHHH-H---HTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC------------CCSCSE
T ss_pred chHHHHHHHHhh-c---cCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCE
Confidence 0000000000 0 013568999999985321 11246799999999987532211110000000112
Q ss_pred HHHhHhhhcccHHHHHHHHHHHH----hc--------ccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 181 DVINLELVFSDLDQIEKRMEKLK----KG--------KAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 181 ~~l~~el~l~d~~~l~~~~~~~~----~~--------~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.++|+ .++.+..........+. .. .+...+||+++.|+.++++.|.+.++.
T Consensus 217 vVlNK-~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 217 VAVTK-SDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp EEECC-CSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEee-ecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22222 22221111111111111 10 011238999999999999999887753
No 140
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.34 E-value=5.7e-12 Score=117.27 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=87.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++... .....| |+.......+.+++. ..++.+|||||....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEEEEEEEESSSS---------------EEEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC-ccceeEEEEEEECCE---------------EEEEEEEeCCCcHhh
Confidence 458999999999999999999996443 222223 222222223333321 246999999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhHhh-----hc
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLEL-----VF 189 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~el-----~l 189 (454)
.. +. ...++++|++++|+|+++. .+++.+.|+.|...+...+.+ + ..
T Consensus 90 ~~----~~---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~ 161 (205)
T 1gwn_A 90 DN----VR---PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVE-LSNHRQTP 161 (205)
T ss_dssp TT----TG---GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHH-HHTTTCCC
T ss_pred hH----HH---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhh-hcccccCC
Confidence 32 21 2246789999999998752 245667788876543222111 1 01
Q ss_pred ccHHHHHHHHHHHHhcccCCCcccc-chHHHHHHHHHHHHhh
Q 012870 190 SDLDQIEKRMEKLKKGKAKDSQSKL-KEDAEKAALEKIQQAL 230 (454)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~vSak-~~~~~~~ll~~i~~~L 230 (454)
...+........+. ..+...+||+ ++.|+.++++.+.+.+
T Consensus 162 v~~~~~~~~~~~~~-~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 162 VSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 11122222111111 1122348998 6899999998887654
No 141
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.4e-12 Score=139.44 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=63.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCC------------------------------CCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~------------------------------~p~tT~~~~~~~~~~~d 103 (454)
+..++|+++|.||+|||||+|+|++.......+ .+++|++.....+..+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 346899999999999999999999543322221 2577877776666554
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
..++.||||||..+ +.......++.||++|+|||++
T Consensus 244 ----------------~~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~ 279 (611)
T 3izq_1 244 ----------------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCS 279 (611)
T ss_dssp ----------------SCEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECS
T ss_pred ----------------CceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECC
Confidence 35799999999843 4445566788999999999985
No 142
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.33 E-value=2.4e-12 Score=125.91 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=85.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc-----ccCCCCc----------------------ccccceeeeee-----eC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QAANFPF----------------------CTIEPNVGIVA-----VP 102 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~-----~vs~~p~----------------------tT~~~~~~~~~-----~~ 102 (454)
..++|+++|.||||||||+|+|+|.... .++..|+ +|.+.....+. +.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999976654 3444554 33221110000 00
Q ss_pred CCc--c--c-hhcccccCccccCceeEEEecCCccCCCCc--cc----ccccccccchhccceEE-EEEeccCC------
Q 012870 103 DPR--L--H-VLSGLSKSQKAVPASVEFVDIAGLVKGASQ--GE----GLGNKFLSHIREVDSIL-QVVRCFED------ 164 (454)
Q Consensus 103 d~r--~--~-~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~----~l~~~fl~~ir~aD~il-~VvD~~~~------ 164 (454)
+.. + + ...+++.|. ..++.||||||+...... .+ .+.......++.+|.++ +|+|+.++
T Consensus 105 g~~~gi~~~~~~~~~~~~~---~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETT---CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred ccCCCccccceEEEEeCCC---CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000 0 0 000011111 246999999999753310 11 23334455667777655 79998652
Q ss_pred -----------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHH
Q 012870 165 -----------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 165 -----------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+++.+.|+.|....-.... +.++..+..+. ...+..++||+++.|+.++++.+.+
T Consensus 182 ~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 182 LKIAKEVDPQGQRTIGVITKLDLMDEGTDAR--------DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSCTTCCCH--------HHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEEEEccccCCCCchHH--------HHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 23455666666442211000 00000000000 0112345899999999888888766
No 143
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.33 E-value=1.2e-11 Score=113.52 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=86.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeee--eCCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA--VPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~--~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
...++|+++|.+|||||||+|.+++.-... +..+.++....+. +.+.. ..++.+|||||.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~ 79 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN----ETLFLESTNKIYKDDISNSS--------------FVNFQIWDFPGQ 79 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG----GGGGCCCCCSCEEEEECCTT--------------SCCEEEEECCSS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc----ceeeeccccceeeeeccCCC--------------eeEEEEEECCCC
Confidence 346899999999999999999999532221 3333333333332 11111 356999999997
Q ss_pred cCCCCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcc
Q 012870 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 132 ~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
.+.... .......++++|++++|+|+++. .+++.+.|+.|...+-..+..
T Consensus 80 ~~~~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----- 150 (196)
T 3llu_A 80 MDFFDP----TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET----- 150 (196)
T ss_dssp CCTTCT----TCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----
T ss_pred HHHHhh----hhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----
Confidence 543221 10003456789999999998873 245667788876543221111
Q ss_pred cHHHHHH-HHHHHHhc------ccCCCccccchHHHHHHHHHHHHhh
Q 012870 191 DLDQIEK-RMEKLKKG------KAKDSQSKLKEDAEKAALEKIQQAL 230 (454)
Q Consensus 191 d~~~l~~-~~~~~~~~------~~~~~vSak~~~~~~~ll~~i~~~L 230 (454)
...+.. ....+.+. .....+||++ .|+.++++.+.+.+
T Consensus 151 -~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 151 -QRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -HhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 011111 11222221 1123489999 99999999887654
No 144
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.33 E-value=6.4e-13 Score=124.25 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=94.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh-cCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt-g~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
..++|+++|.+|||||||+|+++ +.......+.+++|.......+ ... ...+.+|||||...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~---------------~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRG---------------PIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE--TTE---------------EEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCE---------------EEEEEEEeCCChHH
Confidence 45899999999999999999955 3333445666666665554433 211 24699999999754
Q ss_pred CCCcccccccccccchhccceEEEEEeccC-------------------CcceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~-------------------~~~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
... .....++++|++++|+|+++ +.+++.+.|+.|....... .+.. .
T Consensus 77 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~--~--- 142 (221)
T 3gj0_A 77 FGG-------LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK--AKSI--V--- 142 (221)
T ss_dssp TSC-------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC--GGGC--C---
T ss_pred HhH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc--HHHH--H---
Confidence 322 22334678999999999876 2356778888885432110 0110 0
Q ss_pred HHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhCCCC
Q 012870 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (454)
Q Consensus 195 l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~~~~ 235 (454)
..+. . ..+...+||+++.|+.++++.+.+.+...+.
T Consensus 143 ~~~~---~--~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 143 FHRK---K--NLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp HHHH---H--TCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred HHHH---c--CCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 0110 0 1122348999999999999999888876543
No 145
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.32 E-value=5e-12 Score=117.25 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|+++. ....++.++. ....+.+++.. ...+.+|||||....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~--~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~ 67 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITD--SSAIYKVNNNR--------------GNSLTLIDLPGHESL 67 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSC--EEEEEECSSTT--------------CCEEEEEECCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcce--eeEEEEecCCC--------------ccEEEEEECCCChhH
Confidence 45899999999999999999999654 2344554443 33335444321 256999999998532
Q ss_pred CCcccccccccccchhccceEEEEEeccC------------------------CcceEEecCccCCC
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE------------------------DNDIVHVNGKVDPK 177 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~------------------------~~~v~~v~~~~dp~ 177 (454)
.. .+ ....++.+|++++|+|+++ +.+++.+.|+.|..
T Consensus 68 ~~---~~---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 68 RF---QL---LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp HH---HH---HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred HH---HH---HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 11 01 1223678999999999865 13467778888854
No 146
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.32 E-value=5e-12 Score=134.76 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=86.1
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCc------ccccceeeeeeeCCCccchhcccccCccccCceeEEEe
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~------tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvD 127 (454)
...+||++||.||||||||+|+|++.. ......|. ++..|+.+.+.+++. ....++.+||
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~-~~~~~~~t~g~~~~~~~~~~~~~v~~~~~-------------~~~~~~~i~D 104 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGET-FDPKESQTHGLNVVTKQAPNIKGLENDDE-------------LKECLFHFWD 104 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCST-------------TTTCEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEeccccccceeecCC-------------CceEEEEEEE
Confidence 345899999999999999999999543 22222222 122222223322210 1135799999
Q ss_pred cCCccCCCCcccccccccccchhccceEEEEEeccCCcceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhccc
Q 012870 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA 207 (454)
Q Consensus 128 tpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~~~ 207 (454)
|||...... +...| ++++|++++|+|+++. ++...+
T Consensus 105 t~G~e~~~~----~~~~~---l~~~d~ii~V~D~s~~-------------~~~~~~------------------------ 140 (535)
T 3dpu_A 105 FGGQEIMHA----SHQFF---MTRSSVYMLLLDSRTD-------------SNKHYW------------------------ 140 (535)
T ss_dssp CCSCCTTTT----TCHHH---HHSSEEEEEEECGGGG-------------GGHHHH------------------------
T ss_pred CCcHHHHHH----HHHHH---ccCCcEEEEEEeCCCc-------------hhHHHH------------------------
Confidence 999643332 22233 5679999999997431 011000
Q ss_pred CCCccccchHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhccCcEEEEEeccccccCCCCCCccHHHHHHHH
Q 012870 208 KDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 287 (454)
Q Consensus 208 ~~~vSak~~~~~~~ll~~i~~~L~~~~~~~~~~lt~ee~e~lr~~~~lt~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~ 287 (454)
++.+ ..+. ...|+++|+||.| ..+. .....+++++.+
T Consensus 141 ---------------~~~l-----------------------~~~~--~~~pvilV~NK~D--l~~~-~~v~~~~~~~~~ 177 (535)
T 3dpu_A 141 ---------------LRHI-----------------------EKYG--GKSPVIVVMNKID--ENPS-YNIEQKKINERF 177 (535)
T ss_dssp ---------------HHHH-----------------------HHHS--SSCCEEEEECCTT--TCTT-CCCCHHHHHHHC
T ss_pred ---------------HHHH-----------------------HHhC--CCCCEEEEEECCC--cccc-cccCHHHHHHHH
Confidence 0100 0010 2579999999985 4332 133567778877
Q ss_pred hhcCCcEEEechhhhHHhcC
Q 012870 288 SDLQSGRVTISAQVEAELTE 307 (454)
Q Consensus 288 ~~~~~~~v~iSA~~E~~l~~ 307 (454)
...+.+++++||+...++.+
T Consensus 178 ~~~~~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 178 PAIENRFHRISCKNGDGVES 197 (535)
T ss_dssp GGGTTCEEECCC-----CTT
T ss_pred HhcCCceEEEecCcccCHHH
Confidence 77788899999998876654
No 147
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.32 E-value=4.7e-12 Score=127.04 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+|+|.||||||||+|+|++... +...| |++.....+... ..++.||||||....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~-----------------~~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI 222 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEET-----------------TEEEEEEECC-----
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecC-----------------cEEEEEEECCCCHhH
Confidence 456999999999999999999995543 23333 555555555443 357999999996433
Q ss_pred CCcccccccccccchhccceEEEEEeccCC---------------------cceEEecCccCCCChhHHHhHhhhcccHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~---------------------~~v~~v~~~~dp~~di~~l~~el~l~d~~ 193 (454)
.. .....++.+|++++|+|+++. .+++.+.|+.|...+.. .+
T Consensus 223 ~~-------~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~----------~~ 285 (329)
T 3o47_A 223 RP-------LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN----------AA 285 (329)
T ss_dssp CC-------SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC----------HH
T ss_pred HH-------HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC----------HH
Confidence 22 233446789999999999652 23566778877543211 11
Q ss_pred HHHHHHHHHH---hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 194 QIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 194 ~l~~~~~~~~---~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+...+.... ...+...+||+++.|++++++.+.+.+.+
T Consensus 286 ~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 286 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 1111111000 00012348999999999999999887754
No 148
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.30 E-value=5.8e-12 Score=124.37 Aligned_cols=154 Identities=19% Similarity=0.160 Sum_probs=93.8
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
....++|+++|.||||||||+|+++++.. ...++.||.+.....+.+++. ...+.+|||||..
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLE 214 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCCG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCE---------------EEEEEEEeCCCch
Confidence 45668999999999999999999995432 345566666655555554432 2357799999985
Q ss_pred CCCCcccccccccccchhccceEEEEEeccCC--------------------cceEEecCccCCCChhHHHhH--hh--h
Q 012870 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL--EL--V 188 (454)
Q Consensus 133 ~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--------------------~~v~~v~~~~dp~~di~~l~~--el--~ 188 (454)
.... .....++++|++++|+|+++. .+++.+.|+.|...+...... +. .
T Consensus 215 ~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 287 (332)
T 2wkq_A 215 DYDR-------LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287 (332)
T ss_dssp GGTT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred hhhH-------HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccc
Confidence 4332 223346789999999998762 245666677664322111110 00 0
Q ss_pred cccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 189 FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 189 l~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
....+.......... ..+...+||++|.|+.++++.+.+.+.
T Consensus 288 ~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 288 PITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcC-CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 111111111111110 012234899999999999998877664
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.96 E-value=2.6e-13 Score=125.19 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=58.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.||||||||+|+|+++. . ...++.|+.+.....+.+.+. ...+.+|||||..+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQED 90 (204)
Confidence 356899999999999999999999433 2 233444554444333333321 24577999999854
Q ss_pred CCCcccccccccccchhccceEEEEEeccCCc
Q 012870 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (454)
Q Consensus 134 ~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~ 165 (454)
... .....++++|++++|+|+++..
T Consensus 91 ~~~-------~~~~~~~~~d~iilv~D~~~~~ 115 (204)
T 3th5_A 91 YDR-------LRPLSYPQTDVFLICFSLVSPA 115 (204)
Confidence 332 2223467899999999987643
No 150
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.27 E-value=2.5e-12 Score=141.57 Aligned_cols=193 Identities=17% Similarity=0.146 Sum_probs=113.5
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCC-----------cc---ch-----------
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDP-----------RL---HV----------- 108 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~-----------r~---~~----------- 108 (454)
-..++|++||.+|+|||||+|+|+|....+.+.- .||+.|..-.+..... ++ +.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999997665455543 4777665443322111 10 00
Q ss_pred hc-------------ccccCccccCceeEEEecCCccCCCCc--c----c---ccccccccchhccceEEEEEeccCC--
Q 012870 109 LS-------------GLSKSQKAVPASVEFVDIAGLVKGASQ--G----E---GLGNKFLSHIREVDSILQVVRCFED-- 164 (454)
Q Consensus 109 l~-------------~~~~~~~~~~~~i~lvDtpGl~~~~~~--~----~---~l~~~fl~~ir~aD~il~VvD~~~~-- 164 (454)
+. .++.|. ..++.||||||+...... . . .+...++. ..+|++++|+|++.+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~---~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~ 202 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLA 202 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETT---CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSS
T ss_pred hcCCCCcccccceEEEEecCC---CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcc
Confidence 00 011111 236899999999763211 1 1 12233333 579999999998752
Q ss_pred ---------------cceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHH
Q 012870 165 ---------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 165 ---------------~~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
.+++.|.|+.|.+..-... ..........+. ...+..++||++|.|+++|++.+.+
T Consensus 203 ~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--------~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 203 NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA--------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS--------HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh--------HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2456677777765321110 000000000000 0012345899999999999998886
Q ss_pred ---hhhCCCCCCCCCCCHH-----HHHHHH-HHhhhccCcEEE
Q 012870 229 ---ALMDGKPARSVTLNDF-----ERDSIK-QLCLLTMKPIIY 262 (454)
Q Consensus 229 ---~L~~~~~~~~~~lt~e-----e~e~lr-~~~~lt~kpi~~ 262 (454)
.+++++++. .+++. ..++|+ .+...+.+++||
T Consensus 275 e~~ffpe~P~yd--~ltDr~g~~~LaEiLrEkL~~hi~~ELP~ 315 (772)
T 3zvr_A 275 ERKFFLSHPSYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPG 315 (772)
T ss_dssp HHHHHHHCTTTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCcchh--hhhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence 588777653 23433 466777 556678888888
No 151
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.27 E-value=1.5e-12 Score=143.12 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=69.1
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCccc--------------ccceeee-------------eeeCCCc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT--------------IEPNVGI-------------VAVPDPR 105 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT--------------~~~~~~~-------------~~~~d~r 105 (454)
....++|+|+|.||+|||||+|+|+|...+++++.|+|+ ++...+. +.++...
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 456799999999999999999999988888888888772 2110000 0000000
Q ss_pred cc-------------hhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 106 LH-------------VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 106 ~~-------------~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.. ....++.|...+...+.||||||+..... ........+++||++++|+|+++
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~ 212 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQ 212 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTS
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCC
Confidence 00 01123334333324699999999964321 23455667889999999999865
No 152
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.27 E-value=6.6e-11 Score=108.78 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=59.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+|+|.+|||||||+|+|+|... .....|..+.++..+.+.+.+.. ..+.+|||||.....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 47999999999999999999996543 33445666667777777776422 357899999975432
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. +. ...++.+|++++|+|+.
T Consensus 69 ~----~~---~~~~~~~~~~i~v~d~~ 88 (199)
T 2f9l_A 69 R----IT---SAYYRGAVGALLVYDIA 88 (199)
T ss_dssp C----CC---HHHHTTCSEEEEEEETT
T ss_pred h----hh---HHHHhcCCEEEEEEECc
Confidence 2 11 22346789999999974
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.27 E-value=7.6e-13 Score=140.98 Aligned_cols=148 Identities=20% Similarity=0.149 Sum_probs=97.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|+|||||+|+|++. .......|++|.+.....+..++ +..+.||||||....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~-~~~~~~~~giT~~i~~~~v~~~~----------------g~~i~~iDTPGhe~f 65 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT-QVAAMEAGGITQHIGAFLVSLPS----------------GEKITFLDTPGHAAF 65 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH-HHHHSSSCCBCCCTTSCCBCSSC----------------SSCCBCEECSSSCCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcccccCCceeEEEeEEEEEeCC----------------CCEEEEEECCChHHH
Confidence 4689999999999999999999954 44455788999988877776643 245899999997543
Q ss_pred CCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHhHhhhcccHHHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~~el~l~d~~~l~~ 197 (454)
.. .....++.+|++++|+|+.+. .+++.+.|+.|... +...+..++.... .
T Consensus 66 ~~-------~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~-----~ 133 (537)
T 3izy_P 66 SA-------MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYD-----V 133 (537)
T ss_dssp TT-------SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTT-----S
T ss_pred HH-------HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhh-----h
Confidence 32 223446779999999999873 34677788888432 1111111110000 0
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
..+......+..++||++|.|+.+|++.+...++
T Consensus 134 ~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 134 VCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred hHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 0000000112345999999999999999988765
No 154
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.27 E-value=5.9e-12 Score=121.88 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=68.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|||||||+|+|++...+.+++++++|.++....+..++ ..+.+|||||+.+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-----------------FTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-----------------eeEEEEECCCCCCc
Confidence 4589999999999999999999988777889999999998888777653 46999999999765
Q ss_pred CCcccccccccccchh------ccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLSHIR------EVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir------~aD~il~VvD~~ 162 (454)
... ...++..+. .+|++++|+|+.
T Consensus 98 ~~~----~~~~~~~i~~~l~~~~~~~il~V~~~d 127 (262)
T 3def_A 98 GYV----NHQALELIKGFLVNRTIDVLLYVDRLD 127 (262)
T ss_dssp TEE----CHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccc----hHHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 432 223333333 789999998863
No 155
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.26 E-value=4.1e-12 Score=129.56 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC-----CccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~-----~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
..+|+++|.||||||||+|+|++. ..+.++++|+||+++....+ + ..+.++||||
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~------------------~~~~liDtPG 221 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E------------------SGATLYDTPG 221 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S------------------TTCEEEECCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C------------------CCeEEEeCCC
Confidence 468999999999999999999975 57889999999998776543 2 2489999999
Q ss_pred ccCCCCcccccccccccch---hccceEEEEEec
Q 012870 131 LVKGASQGEGLGNKFLSHI---REVDSILQVVRC 161 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~i---r~aD~il~VvD~ 161 (454)
+.........+...++..+ ++.|++++++|.
T Consensus 222 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 222 IINHHQMAHFVDARDLKIITPKREIHPRVYQLNE 255 (369)
T ss_dssp CCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECT
T ss_pred cCcHHHHHHHHhHHHHHHHhcccccCceEEEEcC
Confidence 9876655566777777776 889999999997
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.26 E-value=6.2e-12 Score=131.08 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=62.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccC------------------------------CCCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA------------------------------NFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs------------------------------~~p~tT~~~~~~~~~~~d 103 (454)
+..++|+++|.+|+|||||+|+|++....... ..+++|++.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 34589999999999999999999643222211 125677776666655543
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
.++.||||||..+ +.......++.||++++|||+.+.
T Consensus 95 -----------------~~~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 95 -----------------KHFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred -----------------eEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCC
Confidence 5799999999743 333445567889999999999763
No 157
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.25 E-value=1e-11 Score=127.82 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=90.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCcc---chhcccc--cCccccCceeEEEec
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRL---HVLSGLS--KSQKAVPASVEFVDI 128 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~---~~l~~~~--~~~~~~~~~i~lvDt 128 (454)
...++|+++|.+|+|||||+|+|++........++.+|...... .+..+. +..+... .........+.+|||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCES---CKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTT---SCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccc---cccccceecccccccccccccccccceEEEEEC
Confidence 45689999999999999999999964443333333333211100 000000 0000000 000001156999999
Q ss_pred CCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHhHhhhcc
Q 012870 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 129 pGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
||.. .+.......++.+|++++|+|+.+.. +++.+.|+.|....-.. ..
T Consensus 83 PGh~-------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~-~~----- 149 (403)
T 3sjy_A 83 PGHE-------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA-LS----- 149 (403)
T ss_dssp CCCG-------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-HH-----
T ss_pred CCcH-------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH-HH-----
Confidence 9963 24445566678999999999998742 34556677765432111 00
Q ss_pred cHHHHHHHHHHHHh----cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 191 DLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 191 d~~~l~~~~~~~~~----~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..+...+.+.. ..+..++||++|.|+.+|++.+.+.++.
T Consensus 150 ---~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 ---QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp ---HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 00111111111 1122348999999999999999987754
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.24 E-value=4e-11 Score=124.63 Aligned_cols=102 Identities=16% Similarity=0.049 Sum_probs=52.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc----------cCCCCcccccceeeeeeeC---CCccchh--cccccCcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ----------AANFPFCTIEPNVGIVAVP---DPRLHVL--SGLSKSQKAV 119 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~----------vs~~p~tT~~~~~~~~~~~---d~r~~~l--~~~~~~~~~~ 119 (454)
..++|+++|.+|+|||||+|+|++..... .+..+++|.+........+ .++-..+ ...+..-..-
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 34799999999999999999998654222 2223444432211000000 0000000 0000000001
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+.+|||||..+ +.......++.+|++++|+|+.+
T Consensus 103 ~~~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 103 KRKFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp SEEEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTT
T ss_pred CceEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 34699999999743 22334455789999999999854
No 159
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=8.2e-12 Score=115.29 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=77.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCC-ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCcc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~-~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (454)
....+|+|+|.+|||||||+|+|+|.. .+.+++.+++|... +.+.+. ..+.++||||+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~------------------~~~~l~Dt~G~~ 83 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVA------------------DGKRLVDLPGYG 83 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEE------------------TTEEEEECCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEec------------------CCEEEEECcCCc
Confidence 345799999999999999999999655 45567777877653 233322 147899999985
Q ss_pred CCCCccc------ccccccccchhccceEEEEEeccCCcc----------------eEEecCccCCCChhHHHhHhhhcc
Q 012870 133 KGASQGE------GLGNKFLSHIREVDSILQVVRCFEDND----------------IVHVNGKVDPKSDVDVINLELVFS 190 (454)
Q Consensus 133 ~~~~~~~------~l~~~fl~~ir~aD~il~VvD~~~~~~----------------v~~v~~~~dp~~di~~l~~el~l~ 190 (454)
......+ .....++...+.+|++++|+|+..... +..+.|+.|....-+.-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~------- 156 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK------- 156 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH-------
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH-------
Confidence 4211110 011223333467899999999865321 12223333322110000
Q ss_pred cHHHHHHHHHHHHhc---ccCCCccccchHHHHHHHHHHHHhhhCCC
Q 012870 191 DLDQIEKRMEKLKKG---KAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (454)
Q Consensus 191 d~~~l~~~~~~~~~~---~~~~~vSak~~~~~~~ll~~i~~~L~~~~ 234 (454)
..++.....+... ....++|++++.++.++++.+.+.+++++
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 157 --AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp --HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 0001111111111 11235899999999999999988887653
No 160
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.23 E-value=2.1e-11 Score=110.78 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=79.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCC-CCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~-~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
.++|+|+|.||||||||+|+|++......+. .|..+.+.....+.+... ......+.+|||||..+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~------------~~~~~~~~i~Dt~G~~~~ 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK------------RKRDLVLNVWDFAGREEF 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------------------CEEEEEEECSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC------------CCCceEEEEEecCCCHHH
Confidence 3799999999999999999999643222222 222222222222211100 000356899999998543
Q ss_pred CCcccccccccccchhccceEEEEEeccCCc--------------------ceEEecCccCCCChhHHHhHhhhcccHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~--------------------~v~~v~~~~dp~~di~~l~~el~l~d~~~ 194 (454)
.. + ....++.+|++++|+|+++.. +++.+.|+.|...+...- +.
T Consensus 70 ~~----~---~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~ 133 (184)
T 2zej_A 70 YS----T---HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK---------AC 133 (184)
T ss_dssp HT----T---SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHH---------HH
T ss_pred HH----h---hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhH---------HH
Confidence 22 1 123356799999999987641 234444555543221110 00
Q ss_pred HHHHHHHHHhcc--c----CCCccccchH-HHHHHHHHHHHhhhCC
Q 012870 195 IEKRMEKLKKGK--A----KDSQSKLKED-AEKAALEKIQQALMDG 233 (454)
Q Consensus 195 l~~~~~~~~~~~--~----~~~vSak~~~-~~~~ll~~i~~~L~~~ 233 (454)
.....+.+.+.. + ...+||+++. ++.++++.+.+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 134 MSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp HHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 011112222111 1 2348999995 9999999998887653
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.22 E-value=2e-11 Score=128.72 Aligned_cols=144 Identities=20% Similarity=0.171 Sum_probs=88.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCC------ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENG------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~------~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
.++|+++|.+|+|||||+|+|++.. ....+..+++|++.....+.+++ ..+.+||||
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECC
Confidence 4799999999999999999999654 13445667888887776666642 569999999
Q ss_pred CccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCCh--hHHHhHhhhccc
Q 012870 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD--VDVINLELVFSD 191 (454)
Q Consensus 130 Gl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~d--i~~l~~el~l~d 191 (454)
|..+ +.......++.+|++++|+|+.+. .+.+.+.|+.|.... ++.+.+
T Consensus 82 Gh~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~------ 148 (482)
T 1wb1_A 82 GHAD-------LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEM------ 148 (482)
T ss_dssp SHHH-------HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHH------
T ss_pred ChHH-------HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHH------
Confidence 9732 334455667889999999999762 234566677776531 111111
Q ss_pred HHHHHHHHHHH-H-hcccCCCccccchHHHHHHHHHHHHhhh
Q 012870 192 LDQIEKRMEKL-K-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 192 ~~~l~~~~~~~-~-~~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
.+...+... . ...+..++||++|.|+.+|++.+.+.++
T Consensus 149 --~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 149 --IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp --HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 111111111 0 0122345899999999999999988765
No 162
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.22 E-value=1.4e-11 Score=119.77 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=66.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|+|||||+|+|++.....+++.+++|.++....+... +..+.+|||||+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-----------------GFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-----------------TEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-----------------CeEEEEEECCCCCCC
Confidence 468999999999999999999998777788899999988776665443 356999999999765
Q ss_pred CCccccccccccc--chhccceEEEEEecc
Q 012870 135 ASQGEGLGNKFLS--HIREVDSILQVVRCF 162 (454)
Q Consensus 135 ~~~~~~l~~~fl~--~ir~aD~il~VvD~~ 162 (454)
....+...+.+.. ..+.+|++++|+|+.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLD 130 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 4322111111111 124799999998863
No 163
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.20 E-value=6.7e-11 Score=119.70 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhc------------------------
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS------------------------ 110 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~------------------------ 110 (454)
..++|++||.+|||||||+|+|+|....+.+ ...+|+.|..-............+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~-~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCC-SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCC-CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3469999999999999999999975443332 334555554333221110000000
Q ss_pred -----------------ccccCccccCceeEEEecCCccCCCCc------ccccccccccchhccceEEEEEecc
Q 012870 111 -----------------GLSKSQKAVPASVEFVDIAGLVKGASQ------GEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 111 -----------------~~~~~~~~~~~~i~lvDtpGl~~~~~~------~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
.+..|. ...+.+|||||+.+.... ...+...+...++++|++++|+|..
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~---~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~ 183 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPN---VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA 183 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETT---SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET
T ss_pred HHhcCCCCCcccceEEEEEeCCC---CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc
Confidence 011111 236899999999765321 1122344556788999999999864
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.20 E-value=3e-11 Score=124.40 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC--Cc---ccc-----------CCCCcccccceeeeeeeCCCccchhcccccCccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN--GK---AQA-----------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~--~~---~~v-----------s~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~ 118 (454)
..++|+++|.+|+|||||+|+|++. .. +.. ...+++|++.....+..+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------- 73 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA---------------- 73 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------------
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC----------------
Confidence 4589999999999999999999952 00 000 012345555433333222
Q ss_pred cCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCChhH
Q 012870 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVD 181 (454)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~di~ 181 (454)
..++.||||||..+ +.......++.+|++++|+|+.+. .+ ++.+.|+.|...+-.
T Consensus 74 -~~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~ 145 (405)
T 2c78_A 74 -KRHYSHVDCPGHAD-------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPE 145 (405)
T ss_dssp -SCEEEEEECCCSGG-------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHH
T ss_pred -CeEEEEEECCChHH-------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHH
Confidence 25699999999854 233445567889999999999763 13 456778888653222
Q ss_pred HHhHhhhcccHHHHHHHHHHHHh---cccCCCccccchHH------------------HHHHHHHHHHhhhC
Q 012870 182 VINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDA------------------EKAALEKIQQALMD 232 (454)
Q Consensus 182 ~l~~el~l~d~~~l~~~~~~~~~---~~~~~~vSak~~~~------------------~~~ll~~i~~~L~~ 232 (454)
.++. + .+.+...+..+.- ..+..++||++|.| +.+|++.+.+.++.
T Consensus 146 ~~~~-~----~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 146 LLDL-V----EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHH-H----HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHH-H----HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 1110 0 0111122221110 11223489999987 67788888877763
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.19 E-value=2e-12 Score=139.54 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=42.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccC------------------------------CCCcccccceeeeeeeCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA------------------------------NFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs------------------------------~~p~tT~~~~~~~~~~~d 103 (454)
+..++|+|+|.+|+|||||+|+|++....... ..+++|++.....+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34578999999999999999999743222211 145677776666655442
Q ss_pred CccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
.++.||||||..+ +.......++.||++|+|||+.+
T Consensus 255 -----------------~~i~iiDTPGh~~-------f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 255 -----------------KIYEIGDAPGHRD-------FISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ---------------------CCEEESSSE-------EEEECCC-------CCSEEEEEE
T ss_pred -----------------eEEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 4689999999853 23344556788999999999975
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.19 E-value=1.3e-10 Score=106.57 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=61.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.++|+|+|.+|||||||+|+|+|.. ......|..+.++..+.+.+.+.. ..+.+|||||+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~-~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~ 92 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGLERYR 92 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC-CCCSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSCCSSS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCCcchh
Confidence 4799999999999999999999654 344556777777777887776422 346789999985433
Q ss_pred CcccccccccccchhccceEEEEEecc
Q 012870 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 136 ~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
. +. ...++.+|++++|+|..
T Consensus 93 ~----~~---~~~~~~~~~~i~v~d~~ 112 (191)
T 1oix_A 93 A----IT---SAYYRGAVGALLVYDIA 112 (191)
T ss_dssp C----CC---HHHHTTCCEEEEEEETT
T ss_pred h----hh---HHHhhcCCEEEEEEECc
Confidence 2 21 22356789999999963
No 167
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.18 E-value=3e-11 Score=122.09 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~ 82 (454)
..++|++||.||||||||+|+|+|....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4579999999999999999999976654
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.15 E-value=5e-11 Score=121.57 Aligned_cols=130 Identities=10% Similarity=0.052 Sum_probs=86.1
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
+|+++|.+|+|||||+|+|+ ..++|++.....+..++ .++.+|||||..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~f--- 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPKT--- 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSS-----------------SEEEEEECTTTTTC---
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCC-----------------eEEEEEECCChHHH---
Confidence 89999999999999999998 34677776666555442 46999999998542
Q ss_pred ccccccccccchhccceEEEEEeccCCc----------------ce-EEecC-ccCCCChhHHHhHhhhcccHHHHHHHH
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFEDN----------------DI-VHVNG-KVDPKSDVDVINLELVFSDLDQIEKRM 199 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~~----------------~v-~~v~~-~~dp~~di~~l~~el~l~d~~~l~~~~ 199 (454)
.......++.||++++|+| .+.. +. +.+.| +.|. .. ..+.. +...+
T Consensus 74 ----~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-~~~~~---------~~~~i 137 (370)
T 2elf_A 74 ----LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-HAIDE---------LKAKL 137 (370)
T ss_dssp ----HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-HHHHH---------HHHHH
T ss_pred ----HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-HHHHH---------HHHHH
Confidence 2334455689999999999 5421 22 44455 6665 21 11110 01111
Q ss_pred HHH-Hh----cccCCC--ccccc---hHHHHHHHHHHHHhhhC
Q 012870 200 EKL-KK----GKAKDS--QSKLK---EDAEKAALEKIQQALMD 232 (454)
Q Consensus 200 ~~~-~~----~~~~~~--vSak~---~~~~~~ll~~i~~~L~~ 232 (454)
..+ .. ..+..+ +||++ +.|+++|++.+.+.++.
T Consensus 138 ~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 138 KVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 111 11 123346 89999 99999999999888764
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.14 E-value=6.6e-11 Score=123.07 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc------------------------------cCCCCcccccceeeeeeeCCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPDP 104 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~------------------------------vs~~p~tT~~~~~~~~~~~d~ 104 (454)
..++|+++|.+|+|||||+|+|++..... ....+++|++.....+..+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-- 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-- 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence 34799999999999999999998531110 0113566766655544433
Q ss_pred ccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
..++.||||||..+. .......++.+|++++|+|+.+
T Consensus 83 ---------------~~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 83 ---------------KYFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp ---------------SCEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST
T ss_pred ---------------CeEEEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC
Confidence 256999999998542 2334556788999999999853
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.14 E-value=4.3e-11 Score=127.50 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=71.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc---------------cC------CCCcccccceeeeeeeCCCccchhcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AA------NFPFCTIEPNVGIVAVPDPRLHVLSGLS 113 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~---------------vs------~~p~tT~~~~~~~~~~~d~r~~~l~~~~ 113 (454)
...+|+|+|.||||||||+|+|++...+. +. ..+++|+......+...
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----------- 80 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK----------- 80 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-----------
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-----------
Confidence 34699999999999999999996321111 11 12456666666666554
Q ss_pred cCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 114 ~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
+.++.||||||..+.. ......++.+|++++|+|+++. .+++.+.|+.|..
T Consensus 81 ------~~~i~liDTPG~~df~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 ------DYLINLLDTPGHADFT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp ------TEEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred ------CEEEEEEECCCchhHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 3579999999986533 3456667899999999999862 3567788998853
No 171
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.14 E-value=1e-10 Score=120.58 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=93.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCc--cccCCCCcccccceeeeeeeCCCccchhcccccCccc---------cCce
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA---------VPAS 122 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~--~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~---------~~~~ 122 (454)
...++|+++|.+|+|||||+|+|+|... ......+++|++.......+.... . +..|..... ....
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~--~-~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP--N-CGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECT--T-TCCEESSSBCTTTCCBCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccc--c-cccccccccccccCcccccccE
Confidence 3457999999999999999999996432 223334677876654433321100 0 000000000 0146
Q ss_pred eEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------------ceEEecCccCCCChhHHHh
Q 012870 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVIN 184 (454)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------------~v~~v~~~~dp~~di~~l~ 184 (454)
+.||||||..+ +.......+..+|++++|+|+.+.. +++.+.|+.|....-...
T Consensus 85 i~iiDtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~- 156 (410)
T 1kk1_A 85 VSFIDAPGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL- 156 (410)
T ss_dssp EEEEECSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH-
T ss_pred EEEEECCChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHH-
Confidence 99999999742 3344556677899999999998531 244556777654321100
Q ss_pred HhhhcccHHHHHHHHHHHHh----cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 185 LELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 185 ~el~l~d~~~l~~~~~~~~~----~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+..+...+.+.. ..+..++||+++.|+.+|++.+.+.++.
T Consensus 157 --------~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 --------ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --------HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred --------HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 001111111111 1122348999999999999999887763
No 172
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.12 E-value=6.1e-11 Score=120.07 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=84.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc------CCccccCCCCcccc-----------------cceeeeeeeCCCcc-chh
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTI-----------------EPNVGIVAVPDPRL-HVL 109 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg------~~~~~vs~~p~tT~-----------------~~~~~~~~~~d~r~-~~l 109 (454)
...+.|+|+|.||||||||+|+|+. ...+.+...|.++. ++.......+.... ..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 4567999999999999999999973 23333444443332 01111111110000 000
Q ss_pred c----ccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------ceEEecCc
Q 012870 110 S----GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVHVNGK 173 (454)
Q Consensus 110 ~----~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------~v~~v~~~ 173 (454)
+ +....-...+..+.||||||+... ....++.+|++++|+|....+ +.+.+.|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK 226 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEEC
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEEC
Confidence 0 000000112457999999997431 112247899999999976432 33455666
Q ss_pred cCCCChhHHHhHhhhcccHHHHHHHHHHHHh-----cccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 174 ~dp~~di~~l~~el~l~d~~~l~~~~~~~~~-----~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.|.......- . ....+...+..... ..+..++||++|.|++++++.+.+.++.
T Consensus 227 ~Dl~~~~~~~-~-----~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHHKEAR-L-----AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGHHHHH-H-----HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcChhHHH-H-----HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6643211110 0 01111222221111 0112348999999999999999888864
No 173
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.8e-10 Score=110.98 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=30.6
Q ss_pred cCCcEEEEEecC---------CCCCcHHHHHhhcC--CccccCCCCcc-cccceee
Q 012870 54 SMSLRAGIVGLP---------NVGKSTLFNAVVEN--GKAQAANFPFC-TIEPNVG 97 (454)
Q Consensus 54 ~~~~~I~ivG~p---------NvGKSTL~NaLtg~--~~~~vs~~p~t-T~~~~~~ 97 (454)
...+||++||.| |||||||+|+|++. ........|.+ |.+....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~ 72 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGR 72 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTST
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccccccccee
Confidence 345899999999 99999999999953 33434444444 4444333
No 174
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=98.58 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHhHhCCeEEecCCCCC----eeeEEe-cCCCCHHHHhhhhchhhhhCceEEEEeehh
Q 012870 334 TYSLLGLRTYFTSGEKE----TKAWTI-RAGMTAPQAAGVIHSDFEKGFIRAETVAYD 386 (454)
Q Consensus 334 ~~~~L~li~ffT~g~~e----~raw~i-~~Gsta~~aAg~IHsD~~kgFi~AeV~~~~ 386 (454)
.|+.|+||++||+.++. .++.++ ++|+|+.|+|.+||+||.+.|.+|.||+-+
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~s 62 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLS 62 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTT
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEeccc
Confidence 37899999999976554 578999 999999999999999999999999999864
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.11 E-value=9.8e-11 Score=120.29 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=87.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc----cc-----------cCCCCcccccceeeeeeeCCCccchhcccccCccccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK----AQ-----------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~----~~-----------vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
.++|+++|.+|+|||||+|+|++... .. .....++|++.....+..+ .
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----------------~ 65 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-----------------A 65 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-----------------S
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-----------------C
Confidence 47999999999999999999995310 00 0012344544322222211 2
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCChhHHH
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVDVI 183 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~di~~l 183 (454)
..+.||||||..+ +.......++.+|++++|+|+.+. .+ ++.+.|+.|...+-..+
T Consensus 66 ~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 138 (397)
T 1d2e_A 66 RHYAHTDCPGHAD-------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMV 138 (397)
T ss_dssp CEEEEEECSSHHH-------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHH
T ss_pred eEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHH
Confidence 5699999999853 222334456789999999999872 12 45677888865322211
Q ss_pred hHhhhcccHHHHHHHHHHHHh---cccCCCccccchHH----------HHHHHHHHHHhhhC
Q 012870 184 NLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDA----------EKAALEKIQQALMD 232 (454)
Q Consensus 184 ~~el~l~d~~~l~~~~~~~~~---~~~~~~vSak~~~~----------~~~ll~~i~~~L~~ 232 (454)
+. + .+.+...+....- ..+..++||++|.| +.+|++.+.+.++.
T Consensus 139 ~~-~----~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 139 EL-V----ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HH-H----HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HH-H----HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 10 0 0111122221110 11223489999774 78899998887763
No 176
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=7.6e-11 Score=120.14 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=61.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCC------ccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENG------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~------~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (454)
..+|+++|.||||||||+|+|++.. .+.++++|+||+++....+ + ..+.++|||
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~------------------~~~~liDtP 219 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--D------------------EESSLYDTP 219 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--S------------------SSCEEEECC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--c------------------CCeEEEeCC
Confidence 4689999999999999999999742 4568999999998776553 2 238999999
Q ss_pred CccCCCCcccccccccccc---hhccceEEEEEec
Q 012870 130 GLVKGASQGEGLGNKFLSH---IREVDSILQVVRC 161 (454)
Q Consensus 130 Gl~~~~~~~~~l~~~fl~~---ir~aD~il~VvD~ 161 (454)
|+.......+.+....+.. .++.+.+++++|.
T Consensus 220 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 220 GIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNE 254 (368)
T ss_dssp CBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECT
T ss_pred CcCcHHHHHHHhhHHHHHHhccccccCceEEEEcC
Confidence 9987654444455444443 3677889999987
No 177
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.10 E-value=5.9e-11 Score=116.69 Aligned_cols=62 Identities=34% Similarity=0.489 Sum_probs=40.6
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (454)
...++|+++|.||||||||+|+|+|...+.+++.|++|+++.. +.++ ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEeC------------------CCEEEEECcCcCC
Confidence 4568999999999999999999998888999999999998753 2222 3599999999976
Q ss_pred CC
Q 012870 134 GA 135 (454)
Q Consensus 134 ~~ 135 (454)
+.
T Consensus 178 ~~ 179 (282)
T 1puj_A 178 PK 179 (282)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.10 E-value=1.2e-10 Score=121.87 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=57.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCC-ccc-----------------------cCC------CCcccccceeeeeeeCCCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENG-KAQ-----------------------AAN------FPFCTIEPNVGIVAVPDPR 105 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~-~~~-----------------------vs~------~p~tT~~~~~~~~~~~d~r 105 (454)
.++|+++|.+|+|||||+|+|++.. ... +.+ .+++|++.....+..+
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~--- 83 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC---
Confidence 4799999999999999999998531 000 001 2456666555444433
Q ss_pred cchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
..++.||||||..+ +.......++.+|++++|+|+.
T Consensus 84 --------------~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~ 119 (458)
T 1f60_A 84 --------------KYQVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGG 119 (458)
T ss_dssp --------------SEEEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECS
T ss_pred --------------CceEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCC
Confidence 25699999999642 3334455678999999999984
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.8e-10 Score=104.69 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=51.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccc--cCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~--vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
...++|+++|.+|||||||+|+|++..... ++..|++|.+. . ...+.+|||||.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~-----------------~~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-----------------GSGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C-----------------CTTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c-----------------CCeEEEEECCCC
Confidence 456899999999999999999999654321 12233333221 1 246899999999
Q ss_pred cCCCCcccccccccccchhccceEEEEEecc
Q 012870 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 132 ~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
...... +...+...+..+|++++|+|++
T Consensus 102 ~~~~~~---~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 102 VKLRYK---LSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CBSSCC---HHHHHHHHGGGEEEEEEEEETT
T ss_pred chHHHH---HHHHHHhhcccCCEEEEEEECC
Confidence 654332 1122223345699999999987
No 180
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.08 E-value=2.7e-10 Score=117.37 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=85.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc--cccCCCCcccccceeeeeeeCCCccchhcccccCccc---------cCcee
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA---------VPASV 123 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~--~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~---------~~~~i 123 (454)
..++|+++|.+|+|||||+|+|+|... ......++.|++.......+... +. +..|..... ....+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~--~~-~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKC--PQ-CGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEEC--TT-TCCEESSSBCTTSCCBCEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccc--cc-cccccccccccccCcccccccEE
Confidence 458999999999999999999996432 22333467777654433322100 00 000110000 01469
Q ss_pred EEEecCCccCCCCcccccccccccchhccceEEEEEeccCC------------------cceEEecCccCCCChhHHHhH
Q 012870 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVINL 185 (454)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~------------------~~v~~v~~~~dp~~di~~l~~ 185 (454)
.||||||..+ +...+...+..+|++++|+|+.+. .+++.+.|+.|....-...
T Consensus 84 ~iiDtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~-- 154 (408)
T 1s0u_A 84 SFVDSPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAE-- 154 (408)
T ss_dssp EEEECSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTT--
T ss_pred EEEECCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHH--
Confidence 9999999732 333445556788999999999853 1355677888754321100
Q ss_pred hhhcccHHHHHHHHHHHH-hcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 186 ELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~~-~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
...+.+.+.+.... ...+..++||++|.|+.+|++.+.+.++.
T Consensus 155 ----~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 155 ----ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp ----THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred ----HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 00111111111100 11123458999999999999999887763
No 181
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.07 E-value=2.2e-10 Score=122.58 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc--ccCCCCcccccceeeeeeeC------CCc--------cchhc--------
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVP------DPR--------LHVLS-------- 110 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~--~vs~~p~tT~~~~~~~~~~~------d~r--------~~~l~-------- 110 (454)
..++|+|+|.||||||||+|+|+|...+ .+++.|+||+.. +...-+ +.. +..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4589999999999999999999977655 688899886521 111111 000 00000
Q ss_pred ---ccccCccccCceeEEEecCCccCCCCc--cccc--ccccccchhccceEEEEEeccCC-----------------cc
Q 012870 111 ---GLSKSQKAVPASVEFVDIAGLVKGASQ--GEGL--GNKFLSHIREVDSILQVVRCFED-----------------ND 166 (454)
Q Consensus 111 ---~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~~l--~~~fl~~ir~aD~il~VvD~~~~-----------------~~ 166 (454)
.|.-|.... .++.||||||+..+... ...+ .......++++|++++|+|+.+. .+
T Consensus 142 ~~~~~~~~~~ll-~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p 220 (550)
T 2qpt_A 142 RFMCAQLPNQVL-ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK 220 (550)
T ss_dssp TEEEEECCCHHH-HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG
T ss_pred cceEEecccccc-CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC
Confidence 011111111 36999999999763321 1111 12234457889999999998652 23
Q ss_pred eEEecCccCCCC
Q 012870 167 IVHVNGKVDPKS 178 (454)
Q Consensus 167 v~~v~~~~dp~~ 178 (454)
++.|.|+.|.+.
T Consensus 221 vilVlNK~Dl~~ 232 (550)
T 2qpt_A 221 IRVVLNKADMVE 232 (550)
T ss_dssp EEEEEECGGGSC
T ss_pred EEEEEECCCccC
Confidence 566777777653
No 182
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.05 E-value=2.3e-11 Score=128.56 Aligned_cols=144 Identities=18% Similarity=0.129 Sum_probs=91.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (454)
..++|+++|.+|+|||||+++|++ .....+..+++|.+.....+..++ .++.||||||....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~-~~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRS-TKVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAAF 64 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHH-HHHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc-CCCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHHH
Confidence 457999999999999999999994 334455567788776555444432 45899999998654
Q ss_pred CCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHhHhhhcccHHHHHH
Q 012870 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQIEK 197 (454)
Q Consensus 135 ~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~~el~l~d~~~l~~ 197 (454)
.. .....++.+|++++|+|+.+. .+++.+.|+.|... +...+..++..... +.
T Consensus 65 ~~-------~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~--~~- 134 (501)
T 1zo1_I 65 TS-------MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGI--LP- 134 (501)
T ss_dssp TT-------SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCC--CT-
T ss_pred HH-------HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhh--hH-
Confidence 33 223446789999999998762 34677888888542 11122221111000 00
Q ss_pred HHHHHHhcccCCCccccchHHHHHHHHHHHH
Q 012870 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (454)
Q Consensus 198 ~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~ 228 (454)
+.+....+..++||++|.|+.+|++.+..
T Consensus 135 --~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 135 --EEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp --TCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred --HHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 00000112234899999999999998764
No 183
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.04 E-value=2.9e-10 Score=105.54 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=53.1
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCcccc--CCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQA--ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~v--s~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
...++|+++|.+|||||||+|+|++...... +..|.++.+. . ...+.+|||||+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~-----------------~~~~~l~Dt~G~ 65 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-----------------GSGVTLVDFPGH 65 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------G-----------------GSSCEEEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------e-----------------CceEEEEECCCc
Confidence 4568999999999999999999996542211 2233333221 1 246999999999
Q ss_pred cCCCCccccccccccc-chhccceEEEEEecc
Q 012870 132 VKGASQGEGLGNKFLS-HIREVDSILQVVRCF 162 (454)
Q Consensus 132 ~~~~~~~~~l~~~fl~-~ir~aD~il~VvD~~ 162 (454)
..... ....++. .+..+|++++|+|++
T Consensus 66 ~~~~~----~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 66 VKLRY----KLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp GGGTH----HHHHHHHHHGGGEEEEEEEEETT
T ss_pred HHHHH----HHHHHHHhccccCCEEEEEEECC
Confidence 54332 2222221 223489999999998
No 184
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.03 E-value=1.1e-10 Score=117.59 Aligned_cols=163 Identities=20% Similarity=0.165 Sum_probs=83.3
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc------CCccccCCCCcccccc-----------------eeeeeeeCCC-----
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTIEP-----------------NVGIVAVPDP----- 104 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg------~~~~~vs~~p~tT~~~-----------------~~~~~~~~d~----- 104 (454)
......|+++|+||+|||||+|+|++ ...+.++..|++|... +......+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 34567899999999999999999973 4445566666665411 1000000000
Q ss_pred ccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------ceEEecC
Q 012870 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVHVNG 172 (454)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------~v~~v~~ 172 (454)
....+.+....-..-+.++.||||||+..... . ..+.||++++|+|++... +.+.+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~-------~---~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~N 202 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET-------E---VARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVIN 202 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH-------H---HHTTCSEEEEEECC------CCCCHHHHHHCSEEEEC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH-------H---HHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEE
Confidence 00000000000001145799999999864211 1 247899999999986432 1234556
Q ss_pred ccCCCChhHHHhHhhhcccHHHHHHHHHHHHh-----cccCCCccccchHHHHHHHHHHHHhhh
Q 012870 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 173 ~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~-----~~~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+.|....... .. ..+.+...+..+.. ..+..++||++|.|+.++++.+.+.++
T Consensus 203 K~Dl~~~~~~-~~-----~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 203 KDDGDNHTNV-AI-----ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCTTCHHHH-HH-----HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCChHHH-HH-----HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6654422111 00 00011111111111 011234899999999999998887765
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.01 E-value=7.1e-10 Score=121.79 Aligned_cols=99 Identities=17% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc-----------ccCC------CCcccccceeeeeeeCCCccchhcccccCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----------QAAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~-----------~vs~------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~ 117 (454)
...+|+|+|.+|+|||||+|+|++.... .+.+ .+++|+......+...
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--------------- 73 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--------------- 73 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC---------------
Confidence 3479999999999999999999842111 1111 3456666655555544
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
+.++.||||||..+. .......++.+|++++|+|+.+. .+++.+.|+.|..
T Consensus 74 --~~~i~liDTPG~~df-------~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 74 --GHRVNIIDTPGHVDF-------TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp --TEEEEEECCCCCSSC-------CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred --CeeEEEEECcCCcch-------HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 357999999999653 23445667889999999998762 3467788998854
No 186
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.00 E-value=8.9e-10 Score=118.90 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=82.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccC--------------CCCcccccceeeeeeeCCCccchhcccccCccccCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs--------------~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~ 121 (454)
..+|+|+|.+|+|||||+++|+........ ...+.|+......+.+.+. .....
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~------------~g~~~ 71 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS------------DGETY 71 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT------------TSCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC------------CCCeE
Confidence 468999999999999999999842211110 1134455444444433210 00024
Q ss_pred eeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCChhHHHhH
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINL 185 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~di~~l~~ 185 (454)
.+.||||||..+.. ......++.||++++|+|+++. .+++.+.|+.|....
T Consensus 72 ~l~liDTPGh~dF~-------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a------ 138 (599)
T 3cb4_D 72 QLNFIDTPGHVDFS-------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA------ 138 (599)
T ss_dssp EEEEEECCCCGGGH-------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC------
T ss_pred EEEEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc------
Confidence 68999999986432 2344557889999999999763 245677788885421
Q ss_pred hhhcccHHHHHHHHHHHHhcc--cCCCccccchHHHHHHHHHHHHhhhC
Q 012870 186 ELVFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~~~~~--~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
+.+.+...+...-... ....+||++|.|+.++++.+.+.++.
T Consensus 139 -----~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 139 -----DPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -----CHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -----cHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 0111111111111110 12348999999999999999998874
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.00 E-value=3.1e-10 Score=119.08 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc------------------------cC------CCCcccccceeeeeeeCCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AA------NFPFCTIEPNVGIVAVPDP 104 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~------------------------vs------~~p~tT~~~~~~~~~~~d~ 104 (454)
..++|+++|.+|+|||||+|+|++..... +. ...++|++.....+..+
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-- 119 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-- 119 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS--
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC--
Confidence 45799999999999999999997421110 01 12355555544444333
Q ss_pred ccchhcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
..++.||||||..+.. ......++.+|++++|+|+.+
T Consensus 120 ---------------~~~~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~ 156 (467)
T 1r5b_A 120 ---------------HRRFSLLDAPGHKGYV-------TNMINGASQADIGVLVISARR 156 (467)
T ss_dssp ---------------SEEEEECCCCC------------------TTSCSEEEEEEECST
T ss_pred ---------------CeEEEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCc
Confidence 2569999999985432 233455688999999999854
No 188
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.00 E-value=5.7e-10 Score=120.36 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=65.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCC-cccccceeeeeeeCCCccchhcc-cccC--ccccCceeEEEecCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSG-LSKS--QKAVPASVEFVDIAG 130 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p-~tT~~~~~~~~~~~d~r~~~l~~-~~~~--~~~~~~~i~lvDtpG 130 (454)
..++|+|+|.+|+|||||+|+|++... ....| +.|.+.....++... ...... .... .+.....+.||||||
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~--~~~~~~~~~~~~~v~~~~~~i~liDTPG 79 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDV--IEGICGDFLKKFSIRETLPGLFFIDTPG 79 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHH--HHHHSCGGGGGCGGGGTCCEEEEECCCT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeech--hhhhccccccccccccccCCEEEEECCC
Confidence 357999999999999999999995422 22223 344332221111110 000000 0000 001112599999999
Q ss_pred ccCCCCcccccccccccchhccceEEEEEeccC----------------CcceEEecCccCCC
Q 012870 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPK 177 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~----------------~~~v~~v~~~~dp~ 177 (454)
....... ....++.||++++|+|+.+ +.+++.+.|+.|..
T Consensus 80 he~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 80 HEAFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp TSCCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred cHHHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccc
Confidence 8665432 1233567999999999987 23577888998854
No 189
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.98 E-value=7.5e-10 Score=119.39 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=85.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCcccc--------------CCCCcccccceeeeeeeCCCccchhcccccCccccCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA--------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~v--------------s~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~ 121 (454)
..+|+|+|.+|+|||||+++|++...... ....+.|+......+.+... .....
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~------------dg~~~ 73 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK------------DGNTY 73 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT------------TSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC------------CCCeE
Confidence 46899999999999999999974211110 01134444444333333210 00024
Q ss_pred eeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCCC-hhHHHh
Q 012870 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVIN 184 (454)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~~-di~~l~ 184 (454)
.+.||||||..+.. ......++.||++++|+|+++. .+++.+.|+.|... +...+
T Consensus 74 ~inliDTPGh~dF~-------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v- 145 (600)
T 2ywe_A 74 KLHLIDTPGHVDFS-------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRV- 145 (600)
T ss_dssp EEEEECCCCSGGGH-------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHH-
T ss_pred EEEEEECCCcHhHH-------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHH-
Confidence 68899999996532 2334457889999999999873 24567778888532 11111
Q ss_pred HhhhcccHHHHHHHHHHHHhccc-----CCCccccchHHHHHHHHHHHHhhhC
Q 012870 185 LELVFSDLDQIEKRMEKLKKGKA-----KDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 185 ~el~l~d~~~l~~~~~~~~~~~~-----~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
. +.+..... ...+||++|.|+.++++.+.+.++.
T Consensus 146 -----------~---~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 146 -----------K---KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp -----------H---HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -----------H---HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1 11111111 2348999999999999999998874
No 190
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.97 E-value=2.5e-09 Score=113.89 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc---------------cC------CCCcccccceeeeeeeCCCccchhcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AA------NFPFCTIEPNVGIVAVPDPRLHVLSGLS 113 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~---------------vs------~~p~tT~~~~~~~~~~~d~r~~~l~~~~ 113 (454)
...+|+|+|.+|+|||||+|+|++..... +. ...++|+......+...
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----------- 80 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH----------- 80 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET-----------
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC-----------
Confidence 34799999999999999999999532211 00 12233333333333322
Q ss_pred cCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 114 ~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
+..+.+|||||..+.. ......++.+|++++|+|+.+. .+++.+.|+.|..
T Consensus 81 ------~~~i~liDTPG~~df~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 ------DCLVNLLDTPGHEDFS-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp ------TEEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred ------CeEEEEEECCCChhHH-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc
Confidence 3579999999995433 2344567889999999998762 3467788998854
No 191
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.96 E-value=1.3e-09 Score=123.81 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=86.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc----c-----------ccCCCCcccccceeeeeeeCCCccchhcccccCcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK----A-----------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~----~-----------~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~ 119 (454)
..++|+++|.+|+|||||+|+|++... . ......++|++.....+...
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----------------- 357 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----------------- 357 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-----------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-----------------
Confidence 457999999999999999999995310 0 01123344544322222211
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cc-eEEecCccCCCChhHH
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVDV 182 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~-v~~v~~~~dp~~di~~ 182 (454)
...+.||||||..+. .......++.+|++++|+|+.+. .+ ++.+.|+.|...+-..
T Consensus 358 ~~kI~IIDTPGHedF-------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~ 430 (1289)
T 3avx_A 358 TRHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL 430 (1289)
T ss_dssp SCEEEEEECCCHHHH-------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHH
T ss_pred CEEEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhh
Confidence 256999999998542 23334556789999999999763 12 4567788886543222
Q ss_pred HhHhhhcccHHHHHHHHHHHHh---cccCCCccccch--------HHHHHHHHHHHHhhhC
Q 012870 183 INLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKE--------DAEKAALEKIQQALMD 232 (454)
Q Consensus 183 l~~el~l~d~~~l~~~~~~~~~---~~~~~~vSak~~--------~~~~~ll~~i~~~L~~ 232 (454)
++. + .+.+...+....- ..+..++||++| .++.+|++.+.+.++.
T Consensus 431 le~-i----~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 431 LEL-V----EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHH-H----HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHH-H----HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 110 0 0111222222110 112334899998 6788899998887763
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.92 E-value=5.7e-10 Score=106.77 Aligned_cols=174 Identities=12% Similarity=0.023 Sum_probs=93.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhh-----cCCccccCCCCcccccceeeeeeeCC-Cccch---------------------
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV-----ENGKAQAANFPFCTIEPNVGIVAVPD-PRLHV--------------------- 108 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt-----g~~~~~vs~~p~tT~~~~~~~~~~~d-~r~~~--------------------- 108 (454)
...++++|++|||||||++.|. |.....+..-|+.+.-+........+ .....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4678889999999999999998 66666666555533211000000000 00000
Q ss_pred ----hcccccCccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC---------------------
Q 012870 109 ----LSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------- 163 (454)
Q Consensus 109 ----l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~--------------------- 163 (454)
+......-+ -...+.+|||||........ .++..+...+.+ +++++|+|+..
T Consensus 94 ~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 94 KFNEYLNKILRLE-KENDYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp THHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 000000000 01369999999996432211 122333344566 89999999753
Q ss_pred CcceEEecCccCCCChhHH--HhHhhhcccHHHHHHHH---------------HHHHhc---ccCCCccccchHHHHHHH
Q 012870 164 DNDIVHVNGKVDPKSDVDV--INLELVFSDLDQIEKRM---------------EKLKKG---KAKDSQSKLKEDAEKAAL 223 (454)
Q Consensus 164 ~~~v~~v~~~~dp~~di~~--l~~el~l~d~~~l~~~~---------------~~~~~~---~~~~~vSak~~~~~~~ll 223 (454)
+.++..+.|+.|....... +.+.+ .+.+.+...+ +.+... .+..++||+++.++.+++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 248 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYF--EDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLE 248 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHH--HCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHH--hChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHH
Confidence 1245667788887654321 11111 0111111111 001111 123458999999999999
Q ss_pred HHHHHhhhCCC
Q 012870 224 EKIQQALMDGK 234 (454)
Q Consensus 224 ~~i~~~L~~~~ 234 (454)
+.+.+.++.++
T Consensus 249 ~~i~~~~~~~~ 259 (262)
T 1yrb_A 249 TLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcccc
Confidence 99998887654
No 193
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.91 E-value=4.1e-09 Score=115.73 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=64.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc-----ccC------C------CCcccccceeeeeeeCCCccchhcccccCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QAA------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~-----~vs------~------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~ 117 (454)
...+|+|+|.+|+|||||+|+|+..... .+. + ..++|+......+...
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--------------- 75 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--------------- 75 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET---------------
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC---------------
Confidence 3478999999999999999999831110 111 1 2345555444444433
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
..++.||||||..+ +.......++.+|++++|+|+.+. .+++.+.|+.|..
T Consensus 76 --~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 76 --DHRINIIDTPGHVD-------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp --TEEEEEECCCSSTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred --CeEEEEEECcCccc-------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc
Confidence 35799999999854 233445667889999999998863 3467788998854
No 194
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.91 E-value=1.1e-09 Score=110.23 Aligned_cols=39 Identities=38% Similarity=0.479 Sum_probs=29.0
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc------CCccccCCCCccc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCT 91 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg------~~~~~vs~~p~tT 91 (454)
......++|+|.||||||||+|+|+| ......+..|+++
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 96 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccc
Confidence 34567899999999999999999984 4444445455443
No 195
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.87 E-value=1.1e-09 Score=106.42 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=39.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (454)
.+++++|.||||||||+|+|+|...+.+++.|++|+..... .+ +..+.+|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~------------------~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--SL------------------ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--EC------------------TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--Ee------------------CCCEEEEECCCcccCc
Confidence 69999999999999999999987777899999999876432 22 1358999999997654
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.85 E-value=3.6e-09 Score=98.46 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=83.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcC-----CccccCCCCccccccee------eeeeeCCCcc-----chhcccccCcc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNV------GIVAVPDPRL-----HVLSGLSKSQK 117 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~-----~~~~vs~~p~tT~~~~~------~~~~~~d~r~-----~~l~~~~~~~~ 117 (454)
...++|+++|.+|||||||+|+|++. ..+.+.+.|++|.++.. ..+.++.+.. +.+.+... .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK--K 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG--G
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH--h
Confidence 35679999999999999999999853 23334455555443211 0111111000 00000000 1
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCCc------------ceEEecCccCCCChhHHHhH
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVHVNGKVDPKSDVDVINL 185 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~~------------~v~~v~~~~dp~~di~~l~~ 185 (454)
.....+.+|||||..... .. .. ..++.+++|+|+.... +.+.+.|+.|.....
T Consensus 106 ~~~~d~iiidt~G~~~~~----~~----~~--~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~----- 170 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICP----VD----FD--LGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAV----- 170 (221)
T ss_dssp GTTCSEEEEEEEEBSSGG----GG----CC--CSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHH-----
T ss_pred cCCCCEEEEeCCCCCCCC----ch----hc--cccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcch-----
Confidence 123568999999962111 00 11 1467889999986532 234455665532110
Q ss_pred hhhcccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 186 ELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
..+.+.+...+..+....+..++||++|.|+.++++.+.+.+..
T Consensus 171 ---~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 ---GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp ---TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred ---hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 00112222222222111222348999999999999998887753
No 197
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=3.3e-09 Score=107.67 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=24.6
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhcCCccc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ 83 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~ 83 (454)
....++|+|||.+|+|||||+|+|.+.....
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~ 64 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYP 64 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC--
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 3456899999999999999999998655443
No 198
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.81 E-value=1.7e-08 Score=110.91 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=66.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc-----ccC------C------CCcccccceeeeeeeCCCccchhcccccCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QAA------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~-----~vs------~------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~ 117 (454)
...+|+|+|.+|+|||||+++|+..... .+. + ..+.|+......+.+.+.. ..
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~ 78 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQ 78 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------cc
Confidence 4579999999999999999999732111 011 1 1233443333333332200 00
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
.....+.||||||..+... .....++.||++++|+|+++. .+++.+.|+.|..
T Consensus 79 ~~~~~i~liDTPG~~df~~-------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTI-------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred CCceeEEEEeCCCccchHH-------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 0125799999999965332 334557889999999998863 2456778888853
No 199
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.77 E-value=3.2e-08 Score=99.10 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=53.4
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCCccCCCCc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (454)
||.++|..|||||||++.+.++-..........|.......+ .. ..++++|||||..+....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~----------------~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--ST----------------LIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CS----------------SSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--cc----------------EEEEEEEECCCchhccch
Confidence 689999999999999999884322111111223333322222 10 246999999999765320
Q ss_pred ccccccccccchhccceEEEEEeccCC
Q 012870 138 GEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 138 ~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
.+ .....+++|+++++|+|+.+.
T Consensus 63 --~l--~~~~yyr~a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 63 --SY--DSERLFKSVGALVYVIDSQDE 85 (331)
T ss_dssp --SH--HHHHHHTTCSEEEEECCCSSC
T ss_pred --hh--hhhhhccCCCEEEEEEECCch
Confidence 01 112346899999999998763
No 200
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.73 E-value=1.1e-08 Score=110.00 Aligned_cols=67 Identities=25% Similarity=0.280 Sum_probs=49.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeee--CCCccchhcccccCccccCceeEEEecCCc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV--PDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~--~d~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (454)
....+|+|+|.||||||||+|+|+|...+. +++++|.+.+.+.+.+ +.+. ..+..+.|+||||+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~------------~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPK------------KPGHILVLLDTEGL 101 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSS------------STTCEEEEEEECCB
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeeccccc------------CCCceEEEecCCCc
Confidence 445789999999999999999999765432 7788888877777532 1100 01357999999999
Q ss_pred cCC
Q 012870 132 VKG 134 (454)
Q Consensus 132 ~~~ 134 (454)
...
T Consensus 102 ~~~ 104 (592)
T 1f5n_A 102 GDV 104 (592)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 201
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.69 E-value=4.9e-08 Score=106.69 Aligned_cols=99 Identities=20% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc--cC---------C------CCcccccceeeeeeeCCCccchhcccccCcc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AA---------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~--vs---------~------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~ 117 (454)
...+|+|+|.+|+|||||+++|++..... .+ + ..+.|..+....+...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------------- 72 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------------- 72 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET---------------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC---------------
Confidence 34689999999999999999999532211 00 0 0122322222222221
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCCC
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp~ 177 (454)
...+.+|||||..+. .......++.+|++++|+|+.+. .+++.+.|+.|..
T Consensus 73 --~~~~nliDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 --GHRVFLLDAPGYGDF-------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp --TEEEEEEECCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred --CEEEEEEeCCCccch-------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 356899999998542 23455667889999999998762 3466788888854
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.62 E-value=1e-07 Score=94.25 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ 83 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~ 83 (454)
-.++|+|||.+|||||||+|+|.|....+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 45899999999999999999999653443
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.59 E-value=8.3e-08 Score=89.42 Aligned_cols=161 Identities=15% Similarity=0.176 Sum_probs=81.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCC-----ccccCCCCcccccce------eeeeeeCCCcc-----chhcccccCcc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPN------VGIVAVPDPRL-----HVLSGLSKSQK 117 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~-----~~~vs~~p~tT~~~~------~~~~~~~d~r~-----~~l~~~~~~~~ 117 (454)
...++|+|+|.+|||||||+|+|++.. .+.+.+.+++|.+.. ...+.++.+.. ..+.+.+..-.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356899999999999999999999431 112222222222110 11222221110 00011111111
Q ss_pred ccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC--cce----------EEecCccCCCChhHHHhH
Q 012870 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED--NDI----------VHVNGKVDPKSDVDVINL 185 (454)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~--~~v----------~~v~~~~dp~~di~~l~~ 185 (454)
.....+.++|++|.+.... .| . ...+.++.|+|+... .+. +.+.|+.|....-.
T Consensus 116 ~~~~d~~~id~~g~i~~~~-------s~-~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA-------DF-D--LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG-------GC-C--CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHT----
T ss_pred cCCCCEEEEeCCCCccCcc-------hh-h--hccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhH----
Confidence 1123689999999632211 11 1 123556778886432 222 56677777432100
Q ss_pred hhhcccHHHHHHHHHHHHhcccCCCccccchHHHHHHHHHHHHhhhC
Q 012870 186 ELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (454)
Q Consensus 186 el~l~d~~~l~~~~~~~~~~~~~~~vSak~~~~~~~ll~~i~~~L~~ 232 (454)
.+.+.+...+..+....+...+||++|.++.++++.+.+.+..
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 182 ----ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 0112222222222111222348999999999999988877653
No 204
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.53 E-value=4.1e-08 Score=109.99 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=58.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCC---------------cccccceeeeeeeCCCccchhcccccCccccC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p---------------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~ 120 (454)
..+|+|+|.+|+|||||+|+|++......+..+ +.|+......+.+.... +.+..+-...+...
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD-EDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH-HHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc-cccccccccccCCC
Confidence 468999999999999999999854333322222 33333332222221000 00000000000013
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~ 164 (454)
..+.||||||..+... .....++.+|++++|+|+.+.
T Consensus 98 ~~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTB
T ss_pred ceEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCCC
Confidence 5699999999976432 345567899999999999873
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.33 E-value=8.5e-07 Score=96.46 Aligned_cols=95 Identities=14% Similarity=0.229 Sum_probs=63.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhc--CCcc---ccC------CCC------cccccceeeeeeeCCCccchhcccccCcccc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE--NGKA---QAA------NFP------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg--~~~~---~vs------~~p------~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~ 119 (454)
..|||+|...+|||||.-+|+- +... .+. ++- +.|+......+.++
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~----------------- 65 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE----------------- 65 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-----------------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-----------------
Confidence 3689999999999999999952 1111 111 110 33333333333333
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVD 175 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~d 175 (454)
+..|.|+||||.+++.. ...+.++-+|.+++|||+.+. .+.+.+.|+.|
T Consensus 66 ~~~iNlIDTPGH~DF~~-------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 66 NTKVNIIDTPGHMDFLA-------EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp SCBCCCEECCCSSSTHH-------HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECC
T ss_pred CEEEEEEECCCcHHHHH-------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 35689999999976543 345567889999999999873 24566778888
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.28 E-value=2.6e-06 Score=88.05 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGK 81 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~ 81 (454)
-.++|+|||.+|||||||+|+|+|...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457899999999999999999996544
No 207
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.25 E-value=1.8e-06 Score=89.11 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=78.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccc----cCCCCcccccceeeeeeeCCCccchhcccccCccccCceeEEEecCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ----AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~----vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (454)
....+||+|.+|||||||+|+|+|..... ..+.+.+|+. +.+.-. + ...++.++|+||
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~------------~---~~~~ltv~D~~g 129 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKH------------P---NIPNVVFWDLPG 129 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEEC------------S---SCTTEEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEeccc------------c---ccCCeeehHhhc
Confidence 34589999999999999999999732211 1111112221 111100 0 123689999999
Q ss_pred ccCCCCcccccccccccc--hhccceEEEEEecc--C-------------CcceEEecCccCCCChhHHHhHh----hhc
Q 012870 131 LVKGASQGEGLGNKFLSH--IREVDSILQVVRCF--E-------------DNDIVHVNGKVDPKSDVDVINLE----LVF 189 (454)
Q Consensus 131 l~~~~~~~~~l~~~fl~~--ir~aD~il~VvD~~--~-------------~~~v~~v~~~~dp~~di~~l~~e----l~l 189 (454)
+..... ..+.++.. +.+.|..++ ++.. . ..++..+.++.| +.. .+| ++.
T Consensus 130 ~~~~~~----~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd----lll-LDEPtsgLD~ 199 (413)
T 1tq4_A 130 IGSTNF----PPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD----SDI-TNEADGEPQT 199 (413)
T ss_dssp GGGSSC----CHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH----HHH-HHHHTTCCTT
T ss_pred ccchHH----HHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc----ccc-cCcccccCCH
Confidence 864321 12223321 334455554 6654 1 122333333322 111 111 111
Q ss_pred ccHHHHHHHHHHHH-----hc-cc---CCCccc--cchHHHHHHHHHHHHhhhCCCCCCC
Q 012870 190 SDLDQIEKRMEKLK-----KG-KA---KDSQSK--LKEDAEKAALEKIQQALMDGKPARS 238 (454)
Q Consensus 190 ~d~~~l~~~~~~~~-----~~-~~---~~~vSa--k~~~~~~~ll~~i~~~L~~~~~~~~ 238 (454)
.....+.+.+..+. +. .. ...+|+ ..+.+++++.+.+.+.|+++++.+.
T Consensus 200 ~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~ 259 (413)
T 1tq4_A 200 FDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNF 259 (413)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHH
Confidence 22222333333321 11 11 123677 4556799999999999999886653
No 208
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.17 E-value=3.1e-06 Score=90.39 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=69.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCcc---------------ccCC------CCcccccceeeeeeeCCCccchhcccccC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKA---------------QAAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~---------------~vs~------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~ 115 (454)
..|||||...+|||||.-+|+-...+ .+.+ .-+.|+......+.+.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------------ 99 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------------ 99 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------------
Confidence 47999999999999999999511100 1111 22555555555555553
Q ss_pred ccccCceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCC-CC
Q 012870 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDP-KS 178 (454)
Q Consensus 116 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp-~~ 178 (454)
..|.|+||||.+++.. ...+.++-+|.+++|||+.+. .+.+.+.|++|- -.
T Consensus 100 -----~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 100 -----RVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp -----EEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred -----EEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 5799999999987654 345567889999999999873 356778899883 34
Q ss_pred hhHHHhH
Q 012870 179 DVDVINL 185 (454)
Q Consensus 179 di~~l~~ 185 (454)
++..+..
T Consensus 168 d~~~~~~ 174 (548)
T 3vqt_A 168 HPLDVMA 174 (548)
T ss_dssp CHHHHHH
T ss_pred chhHhhh
Confidence 4443333
No 209
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.12 E-value=1.7e-06 Score=90.00 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC---------------CccccCCCCcccccceeeeeeeCCCccchhcccccCcccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN---------------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~---------------~~~~vs~~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~ 119 (454)
...-|+|+|.||+|||||+|.|.|. .....+..| +|...+.|++....+-.. -.|. ..
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~-----~~~~-~~ 138 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLI-----NKPD-GK 138 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEE-----ECSS-SC
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCcccc-----ccCC-CC
Confidence 3456889999999999999999963 122233223 666677777654321000 0000 01
Q ss_pred CceeEEEecCCccCC
Q 012870 120 PASVEFVDIAGLVKG 134 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~ 134 (454)
..++.|+||||+...
T Consensus 139 ~~~vvllDTeG~~~~ 153 (447)
T 3q5d_A 139 KVAVLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEEEEECCCSS
T ss_pred cceEEEEcCCccccc
Confidence 257999999999643
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.95 E-value=4.3e-06 Score=88.32 Aligned_cols=107 Identities=17% Similarity=0.094 Sum_probs=54.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh------cCCccccCCCCccccc----------ceeeeeeeCCC-ccchh-cccccCc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTIE----------PNVGIVAVPDP-RLHVL-SGLSKSQ 116 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt------g~~~~~vs~~p~tT~~----------~~~~~~~~~d~-r~~~l-~~~~~~~ 116 (454)
....|+++|.|||||||++|+|+ |.....++.-++.... .....+..... ....+ ......-
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999 6665555442221100 00000000000 00000 0000000
Q ss_pred cccCceeEEEecCCccCCCCcccccccccc--cchhccceEEEEEeccCC
Q 012870 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFL--SHIREVDSILQVVRCFED 164 (454)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~fl--~~ir~aD~il~VvD~~~~ 164 (454)
+.-+..+.||||||...... .+..... ..+..+|.+++|+|+...
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred HHCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEecccc
Confidence 00135799999999864221 1222111 112378999999998764
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.93 E-value=5.1e-05 Score=83.42 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=62.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCcc-----ccCC------------CCcccccceeeeeeeCCCccchhcccccCcccc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKA-----QAAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~-----~vs~------------~p~tT~~~~~~~~~~~d~r~~~l~~~~~~~~~~ 119 (454)
..|||||...+|||||.-+|+-.... .+.. .-+.|+....-.+.+.+.+ .+.-
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~----------~~~~ 83 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR----------GQYD 83 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT----------SCSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc----------CCCC
Confidence 47999999999999999999621100 1110 1123333332233222111 0111
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccCC----------------cceEEecCccCC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDP 176 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~~----------------~~v~~v~~~~dp 176 (454)
...|.|+||||.+++.. .....++-+|.+++|||+.+. .+.+.+.|++|-
T Consensus 84 ~~~iNlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr 149 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149 (709)
T ss_dssp CEEEEEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSS
T ss_pred CEEEEEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccc
Confidence 35799999999987544 445567889999999999873 346777888883
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.88 E-value=2.7e-05 Score=80.52 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
..++++|||.+|||||||+|+|+|..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33569999999999999999999753
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.73 E-value=1.7e-05 Score=82.36 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+..|+++|.|||||||+++.|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.69 E-value=2.1e-05 Score=76.42 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
+.++|||.+|||||||+|.|+|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999743
No 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=1.4e-05 Score=79.21 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP 88 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p 88 (454)
.-.++|+|.||||||||+|+|+|.....++..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 358999999999999999999976655555544
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.55 E-value=3.9e-05 Score=77.57 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=24.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCc-cccCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGK-AQAANF 87 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~-~~vs~~ 87 (454)
-.++|+|.+|||||||+|+|+|... ..++..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I 247 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDV 247 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC--
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCc
Confidence 4799999999999999999997655 444443
No 217
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.32 E-value=0.00014 Score=71.56 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=23.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP 88 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p 88 (454)
-.++++|.+|||||||+|+|.|......+..+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 47899999999999999999976555544443
No 218
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.32 E-value=0.00019 Score=70.60 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=25.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF 89 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~ 89 (454)
..++++|.+|||||||+|+|+ .....++....
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 478999999999999999999 76665555554
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.19 E-value=0.00044 Score=74.63 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.+.|||||.+|||||||+|+|+|-
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCeEEEECCCCChHHHHHHHHhCC
Confidence 357999999999999999999975
No 220
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.13 E-value=0.00044 Score=54.51 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=34.2
Q ss_pred CeEEecCCCCCeeeEEecCCCCHHHHhhhhchhhhhCceEEEE
Q 012870 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAET 382 (454)
Q Consensus 340 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~AeV 382 (454)
-|.+|| |+ -+...+++|+|+.|+|..||+|+.+.++.|+|
T Consensus 7 ~i~v~t--P~-G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV 46 (78)
T 3hvz_A 7 EVFVFT--PK-GDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV 46 (78)
T ss_dssp EEEEEC--TT-SCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE
T ss_pred eEEEEC--CC-CCEEEecCCCCHHHHHHHhhhhhhcceEEEEE
Confidence 366777 33 36678999999999999999999999999998
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.12 E-value=0.00028 Score=73.18 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+..|+++|.|||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35678999999999999999997
No 222
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.00013 Score=67.70 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=34.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCc-cccCCCCcccccceeee
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~-~~vs~~p~tT~~~~~~~ 98 (454)
..|+|+|.+|||||||+|+|.+... ......+.||+.|..|.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 4689999999999999999995433 24566788999888775
No 223
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.60 E-value=0.00092 Score=60.15 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=28.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCc-cccCCCCcccccceee
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVG 97 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~-~~vs~~p~tT~~~~~~ 97 (454)
..++|+|.+|||||||++.|.+... ......+.+|+.|..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 4799999999999999999996432 1224456677666554
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.0016 Score=67.43 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..|+++|.+||||||+++.|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999999997
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.23 E-value=0.0025 Score=62.59 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+++|.+|+||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999973
No 226
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.15 E-value=0.0019 Score=58.45 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
++++|+|.+|+|||||++.|+|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999964
No 227
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.09 E-value=0.0028 Score=58.38 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCcc-ccCCCCcccccceee
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~-~vs~~p~tT~~~~~~ 97 (454)
..-|+|+|.+|||||||++.|.+.... .....+.+|+.|..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 346999999999999999999954332 344455666655443
No 228
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.07 E-value=0.0014 Score=60.11 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++|+|.+|||||||++.|+|
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999995
No 229
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.06 E-value=0.0089 Score=60.13 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=28.4
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+.+|||+|...... .+....++++++|+|+|+++
T Consensus 192 ~~~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp TEEEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGG
T ss_pred CeeEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECcc
Confidence 35689999999854333 34455789999999999887
No 230
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.94 E-value=0.0036 Score=64.78 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999997
No 231
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.94 E-value=0.0022 Score=57.92 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=26.7
Q ss_pred EEEEEecCCCCCcHHHHHhhcCCcc-ccCCCCcccccceee
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~~~-~vs~~p~tT~~~~~~ 97 (454)
-++|+|.+|||||||++.|+|.... .......+|+.|..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~g 43 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCC
Confidence 4899999999999999999964321 112233455544444
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.87 E-value=0.0031 Score=57.69 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=30.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCCcc-ccCCCCcccccceee
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~~~-~vs~~p~tT~~~~~~ 97 (454)
....-|+|+|.||||||||.+.|...... .....+.||+.|..+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~ 54 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREK 54 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCC
Confidence 34567999999999999999999843211 222345677766543
No 233
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.84 E-value=0.0029 Score=59.26 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCcc--ccCCCCcccccc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEP 94 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~--~vs~~p~tT~~~ 94 (454)
..--++|+|.+|||||||++.|.|.... .....+.+|+.+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 4457999999999999999999965431 233445555443
No 234
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.68 E-value=0.0039 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+...|+|+|.|++||||+.+.|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999985
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.56 E-value=0.004 Score=57.01 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=31.3
Q ss_pred EEEEecCCCCCcHHHHHhhcCCc-cccCCCCcccccceeeee
Q 012870 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGIV 99 (454)
Q Consensus 59 I~ivG~pNvGKSTL~NaLtg~~~-~~vs~~p~tT~~~~~~~~ 99 (454)
|+|+|++|||||||+++|..... ...-..+.||+.|..|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 78999999999999999984321 233457789998777654
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.55 E-value=0.0057 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+|+|.|+||||||++.|.+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999995
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.51 E-value=0.0064 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.2
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|+|+|.+++|||||++.|.|
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999985
No 238
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.50 E-value=0.018 Score=58.03 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=24.8
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
...+.+|||||...... .+...+++++++|+|+|+++
T Consensus 200 ~~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp TEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred CeEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECcc
Confidence 35789999999954433 33445678999999999987
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.48 E-value=0.0051 Score=57.31 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=16.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhh-cCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV-ENG 80 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt-g~~ 80 (454)
...++|+|.++||||||++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3579999999999999999999 753
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.45 E-value=0.0081 Score=58.77 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=47.5
Q ss_pred cCcEEEEEeccccccCCCCCCccHHHHHHHHhhcC--CcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHHH
Q 012870 257 MKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ--SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRST 334 (454)
Q Consensus 257 ~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~--~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~~ 334 (454)
..|+++|+||.| +.+. ...+++++++...+ .+++++||+...++.++-...+.++..-+|-..+|-..+++.+
T Consensus 115 ~~piilv~NK~D--L~~~---~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 115 ELETVMVINKMD--LYDE---DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp TCEEEEEECCGG--GCCH---HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEeHHH--cCCc---hhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHh
Confidence 679999999984 5422 12244566665555 7899999999888754411111122223455667777777766
Q ss_pred HhHhC
Q 012870 335 YSLLG 339 (454)
Q Consensus 335 ~~~L~ 339 (454)
..++.
T Consensus 190 ~g~~~ 194 (301)
T 1u0l_A 190 NPGLK 194 (301)
T ss_dssp STTCC
T ss_pred ccccc
Confidence 55443
No 241
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.34 E-value=0.017 Score=59.85 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...-|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34567899999999999999765
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.34 E-value=0.0057 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+|||||||++.|+|-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999964
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.25 E-value=0.0077 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-++|+|.+|||||||++.|+|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 347999999999999999999964
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.012 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
...|+|+|.+||||||+++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999954
No 245
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.08 E-value=0.0092 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+.|+|+|.|++||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.97 E-value=0.0084 Score=55.71 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|.+|||||||++.|+|.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999963
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.95 E-value=0.01 Score=54.04 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
...|||+|.+++|||||++.|.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999963
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.89 E-value=0.011 Score=55.61 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..|+|+|.||||||||++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 249
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.88 E-value=0.011 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+..|.|+|.|+|||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 45689999999999999999983
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.81 E-value=0.0098 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|||||||++.|+|-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347999999999999999999953
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.81 E-value=0.01 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|..|||||||++.|+|-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999953
No 252
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.80 E-value=0.012 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.|+|+|.++|||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 253
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.77 E-value=0.011 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++|+|.++||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999984
No 254
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.67 E-value=0.015 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|..++|||||++.|+|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.67 E-value=0.014 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+...++|+|.+|+|||||+++|.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 456899999999999999999994
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.67 E-value=0.013 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.|+|+|.++|||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999995
No 257
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.59 E-value=0.012 Score=57.90 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...-.++|+|.+|+|||||++.|.|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445899999999999999999995
No 258
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.58 E-value=0.012 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.--++|+|.+|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3468999999999999999865
No 259
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.55 E-value=0.0073 Score=54.39 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++|+|.+|+|||||++.|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999994
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.55 E-value=0.013 Score=55.66 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|..|||||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999953
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.54 E-value=0.015 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+|+|.++||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 262
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.50 E-value=0.015 Score=56.97 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=48.5
Q ss_pred ccCcEEEEEeccccccCCCCCCc--cHHHHHHHHhhcCCcEEEechhhhHHhcCCCHHHHHHHHHHcCCCCchHHHHHHH
Q 012870 256 TMKPIIYVANVAESDLADPGSNP--HVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRS 333 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~~~~~--~~~~i~~~~~~~~~~~v~iSA~~E~~l~~l~~ee~~e~l~~~gl~~~~l~~li~~ 333 (454)
..+|+++|+||.| +.+. .. ..+++.+++++.+.+++++||+...++.+|-...+.++..-.|-...|-..|++.
T Consensus 109 ~~~~~ilV~NK~D--L~~~--~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~ 184 (302)
T 2yv5_A 109 FKVEPVIVFNKID--LLNE--EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSR 184 (302)
T ss_dssp TTCEEEEEECCGG--GCCH--HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEEccc--CCCc--cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHH
Confidence 4789999999984 4322 11 1445556666678899999999988775441100111112234456777788887
Q ss_pred HHhHhC
Q 012870 334 TYSLLG 339 (454)
Q Consensus 334 ~~~~L~ 339 (454)
+. .+.
T Consensus 185 l~-~~~ 189 (302)
T 2yv5_A 185 LT-GEE 189 (302)
T ss_dssp HH-SCC
T ss_pred HH-Hhh
Confidence 76 553
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.46 E-value=0.013 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999953
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.46 E-value=0.018 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|+|+|.+++||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.014 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999953
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.43 E-value=0.015 Score=50.39 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.8
Q ss_pred cEEEEEecCCCCCcHHHHHh
Q 012870 57 LRAGIVGLPNVGKSTLFNAV 76 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaL 76 (454)
+.|+|+|.|+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.42 E-value=0.014 Score=54.49 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|..++|||||++.|+|-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999953
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.42 E-value=0.014 Score=56.70 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|||||||++.|+|-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 347999999999999999999953
No 269
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.41 E-value=0.016 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.+.|+|+|.|+|||||+.+.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.41 E-value=0.014 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|||||||++.|+|-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999953
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.40 E-value=0.013 Score=56.35 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|||||||++.|+|-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347999999999999999999953
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.35 E-value=0.015 Score=55.23 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999953
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.31 E-value=0.021 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999954
No 274
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.30 E-value=0.015 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|..|+|||||++.|+|
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999995
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.27 E-value=0.017 Score=54.30 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999953
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.26 E-value=0.019 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..|+|+|.|+|||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.26 E-value=0.016 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999953
No 278
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.24 E-value=0.057 Score=54.23 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=26.7
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
..+.+|||+|...... .+...++++|++++|+|++
T Consensus 183 v~l~iwDtaGQe~~r~-------~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERR-------KWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp -EEEEEEECCSTTGGG-------GTGGGCTTEEEEEEEEEGG
T ss_pred eeeEEEECCCchhhhH-------HHHHHhCCCCEEEEEEECc
Confidence 5689999999965433 3344578999999999987
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.21 E-value=0.019 Score=50.03 Aligned_cols=21 Identities=19% Similarity=-0.058 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.|+|+|.|+|||||+.+.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.20 E-value=0.016 Score=55.77 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 347999999999999999999953
No 281
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.19 E-value=0.022 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+...|+|+|.|++||||+.+.|.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999994
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.18 E-value=0.016 Score=55.47 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999953
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.16 E-value=0.017 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|..|+|||||++.|+|-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999953
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.14 E-value=0.017 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|..|+|||||++.|+|
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999995
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.14 E-value=0.023 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+++.|.|+|.|+|||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.14 E-value=0.024 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..+||||||++.|+|.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999964
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.14 E-value=0.016 Score=52.89 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEecCCCCCcHHHHHhhcC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.++|+|.+++|||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999964
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.14 E-value=0.018 Score=55.18 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|+|..|+|||||++.|+|
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334799999999999999999995
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.10 E-value=0.022 Score=50.18 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..|.|+|.|+|||||+.++|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999998
No 290
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.06 E-value=0.074 Score=52.83 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=27.1
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
..+.+|||+|...... .+....++++++++|+|.+
T Consensus 167 v~l~iwDtgGQe~~R~-------~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERR-------KWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp EEEEEEEECCSHHHHT-------TGGGGCSSCSEEEEEEEGG
T ss_pred eeeEEEEcCCchhHHH-------HHHHHhCCCCEEEEEEECc
Confidence 5789999999954333 3445678999999999876
No 291
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.05 E-value=0.02 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|+|+|.|+|||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.03 E-value=0.019 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|.+++|||||++.|+|
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999995
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.02 E-value=0.02 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347999999999999999999953
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.01 E-value=0.021 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.|+|+|.|+|||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 4699999999999999999983
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.00 E-value=0.02 Score=55.28 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..|+|||||++.|+|-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3347999999999999999999953
No 296
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.00 E-value=0.019 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999964
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.97 E-value=0.02 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|+|+|.|++||||+.+.|.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 298
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.96 E-value=0.019 Score=55.03 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|+|.+|+|||||+++|.|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999995
No 299
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.96 E-value=0.11 Score=52.94 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.2
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEeccC
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~~ 163 (454)
..+.+|||+|...... .+...+++|+++|+|+|+++
T Consensus 217 v~l~iwDtaGQe~~r~-------~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 217 VNFHMFDVGGQRDERR-------KWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp EEEEEEEECCSGGGGG-------GGGGGTTTCCEEEEEEETTG
T ss_pred ccceecccchhhhhhh-------hhHhhccCCCEEEEEEECcc
Confidence 5689999999965433 34455789999999999886
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.93 E-value=0.019 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347999999999999999999953
No 301
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.90 E-value=0.023 Score=51.89 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
|+|+|.|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.73 E-value=0.026 Score=55.65 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.4
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|||+|.++||||||++.|.|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4556899999999999999999995
No 303
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.72 E-value=0.023 Score=50.19 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
..|.|+|.|++||||+.+.|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 304
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.71 E-value=0.03 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+.|+|.|.|+|||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 305
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.71 E-value=0.026 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
|+|+|+|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.67 E-value=0.029 Score=49.77 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.|.|.|.|+|||||+.+.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 307
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.61 E-value=0.03 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+|+|.|+|||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.60 E-value=0.026 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|..++|||||++.|+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999995
No 309
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.60 E-value=0.034 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.+.|+|.|.|+|||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.59 E-value=0.03 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
....|||+|.++||||||++.|.|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999985
No 311
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.58 E-value=0.017 Score=56.86 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
..-.++|||.+|+|||||++.|+|-- +|..|.+.+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~G 115 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY------------DISSGCIRIDG 115 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC------------CCCCcEEEECC
Confidence 34579999999999999999999532 24567766654
No 312
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.56 E-value=0.026 Score=52.35 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|.++||||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.55 E-value=0.03 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.|+|.|.|+|||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 314
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.53 E-value=0.034 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
....|+|+|.|++||||+.+.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999983
No 315
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.43 E-value=0.031 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
|.|+|.|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 316
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.43 E-value=0.03 Score=48.96 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|+|.|.|+|||||+.+.|.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.42 E-value=0.036 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
|...|+|+|.|+|||||+.+.|.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.41 E-value=0.023 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-+++|+|.+|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999964
No 319
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.37 E-value=0.037 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|+|.|.|+|||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 320
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.36 E-value=0.037 Score=50.38 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.8
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|+|+|.+++|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.34 E-value=0.037 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+.|+|+|.|+|||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 322
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.34 E-value=0.031 Score=55.53 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|.+|+|||||+|+|.|
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999995
No 323
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.33 E-value=0.037 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|.+++|||||++++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999995
No 324
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.33 E-value=0.026 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.+.|+|+|.|++||||+.+.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.28 E-value=0.036 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|+|.|.|+|||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.27 E-value=0.035 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|+|+|.|+|||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.27 E-value=0.039 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.++.|+|+|.|++||||+.+.|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.24 E-value=0.033 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..|+|||||++.|+|-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347999999999999999999953
No 329
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.23 E-value=0.039 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...|+|+|.+||||||+.+.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.23 E-value=0.038 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.++.|+|+|.|+|||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999997
No 331
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.21 E-value=0.031 Score=56.47 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.+||+|..|||||||++.|.|-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 347999999999999999999953
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.18 E-value=0.04 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+.|+|+|.|+|||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 333
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.17 E-value=0.045 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.5
Q ss_pred cccCCcEEEEEecCCCCCcHHHHHhh
Q 012870 52 KISMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 52 ~~~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...+...|+|+|.|++||||+.+.|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34456789999999999999999998
No 334
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.11 E-value=0.04 Score=48.90 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...|.|+|.|+|||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 335
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.10 E-value=0.041 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+++.|+|.|.++|||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.08 E-value=0.039 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
|+|+|.|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 337
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.08 E-value=0.04 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|||+|.+++|||||++.|.|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999985
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.07 E-value=0.041 Score=50.90 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.++.|+|+|.|+|||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999997
No 339
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.98 E-value=0.036 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|+|.+|+|||||+|+|.|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999999994
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.97 E-value=0.046 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..+.|+|+|.++|||||+.+.|..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 341
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.96 E-value=0.045 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=16.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|.|.|.|+|||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 342
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.95 E-value=0.032 Score=49.54 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|.||+|||||++++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.95 E-value=0.041 Score=48.84 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.|+|.|.|+|||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.82 E-value=0.045 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.++.|.|+|.|+|||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.77 E-value=0.046 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|.|+|.|||||||+.+.|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.72 E-value=0.039 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
-.|+|+|.+|+|||||+++|+|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999985
No 347
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.70 E-value=0.042 Score=55.35 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|..+||||||++.|.|-.. |..|.+.+.+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G 65 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ------------PDSGEISLSG 65 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECC
Confidence 4789999999999999999996422 4467776654
No 348
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.69 E-value=0.05 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=22.4
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhh
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...++.|+|.|.|+|||||+.+.|.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999999997
No 349
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.57 E-value=0.043 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.++|+|..++|||||++.|+|-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347899999999999999999964
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.57 E-value=0.054 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+|+|.+++||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999984
No 351
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.53 E-value=0.027 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
.|+|+|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.50 E-value=0.045 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=27.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|.+|+|||||++.|+|-. .|..|.+.+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY------------KPTSGEIYFDD 64 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC------------CCCccEEEECC
Confidence 478999999999999999999632 14567766654
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.49 E-value=0.055 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..++|+|+.|||||||+|.|.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46789999999999999999964
No 354
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.46 E-value=0.057 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|.|+|.|+|||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.44 E-value=0.053 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..++-|||+|.++||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999974
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.42 E-value=0.054 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.4
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.|+|.|.|+|||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.31 E-value=0.048 Score=55.11 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|..|+|||||++.|.|-. .|..|.+.+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGD 64 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECC
Confidence 468999999999999999999632 14567776654
No 358
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.30 E-value=0.047 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|.+|+|||||+++|.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999999995
No 359
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.30 E-value=0.049 Score=54.90 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|..|+|||||++.|+|-. .|..|.+.+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY------------KPTSGKIYFDE 64 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CEEEEECCCCchHHHHHHHHhcCC------------CCCceEEEECC
Confidence 478999999999999999999632 14567766654
No 360
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.26 E-value=0.05 Score=55.25 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|.+|||||||++.|+|-.. |..|.+.+.+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G 64 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGE 64 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECC
Confidence 4789999999999999999996422 4567776654
No 361
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.25 E-value=0.059 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...|.|+|.|++||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999999998
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.22 E-value=0.064 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|+|.|.|++||||+.+.|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 363
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.18 E-value=0.28 Score=48.89 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.7
Q ss_pred CceeEEEecCCccCCCCcccccccccccchhccceEEEEEecc
Q 012870 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (454)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~~ 162 (454)
...+.+|||+|..... ..+....++++++|+|+|++
T Consensus 160 ~v~l~iwDtaGQe~~R-------~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 160 DIPFHLIDVGGQRSER-------KXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp SCEEEEEECCSCHHHH-------HHHHTTSCSCSEEEEEEEGG
T ss_pred eeeeccccCCCccccc-------ccHHHHhccCCEEEEEEECC
Confidence 3579999999985332 33445678999999999998
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.15 E-value=0.062 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=22.0
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....|||+|.+++|||||.+.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999973
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.14 E-value=0.052 Score=54.88 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=27.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
.-.++|+|..++|||||++.|.|-.. |..|.+.+.+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g 72 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE------------PTEGRIYFGD 72 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC------------CCceEEEECC
Confidence 34789999999999999999996421 4566666654
No 366
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.11 E-value=0.055 Score=57.04 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...++|+|.+|||||||+|+|+|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999994
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.11 E-value=0.065 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...++|+|.+|+|||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 368
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.04 E-value=0.061 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
...-|+|+|..+||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999953
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.96 E-value=0.055 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.6
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
-++|+|.||+|||||+++|.|
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999995
No 370
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.94 E-value=0.058 Score=51.95 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.--++|+|.|++|||||++.|++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 347899999999999999999953
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.91 E-value=0.065 Score=49.59 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.|+|.|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.86 E-value=0.071 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.|+|+|.+|||||||++.|.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345899999999999999999985
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.85 E-value=0.061 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|+|.+++|||||++.|+|
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34799999999999999999995
No 374
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.83 E-value=0.065 Score=50.66 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.++..|.++|.|||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999983
No 375
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.81 E-value=0.061 Score=48.95 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|.|++|||||++.|++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 376
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.68 E-value=0.079 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.|+|.|.+++||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 377
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.67 E-value=0.061 Score=55.26 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|.+|+|||||+++|+|
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999995
No 378
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.60 E-value=0.044 Score=54.94 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|..|+|||||++.|+|-. .|..|.+.+.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~~~g 61 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDG 61 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CEEEEECCCCccHHHHHHHHHcCC------------CCCCcEEEECC
Confidence 478999999999999999999632 14567666654
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.58 E-value=0.078 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+.|+|.|.|++||||+.+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 380
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.50 E-value=0.073 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+|+|.+++||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 381
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.47 E-value=0.069 Score=50.09 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-++|+|.||+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999953
No 382
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.34 E-value=0.086 Score=56.37 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|+|.+|+|||||++.|+|
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999995
No 383
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.33 E-value=0.085 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+-.++++|.+||||||+++.|.|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 384
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.32 E-value=0.075 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
..-.+||+|..|+|||||++.|+|.-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999743
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.27 E-value=0.087 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+-.++++|.+||||||+++.|+|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.08 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhcCC
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
.....++|+|..|+|||||++.|+|-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 355789999999999999999999653
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.23 E-value=0.041 Score=55.28 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
-.++|+|..|+|||||++.|+|-. .|..|.+.+.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 66 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDD 66 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECC
Confidence 478999999999999999999642 14567766654
No 388
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.21 E-value=0.095 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+.|.|+|.|++||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.19 E-value=0.11 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.-|.|+|.|||||||+.++|.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999999997
No 390
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.13 E-value=0.091 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+..|.|+|.|++||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999983
No 391
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.12 E-value=0.084 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-+++|+|.+++|||||++.|+|.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999965
No 392
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.10 E-value=0.093 Score=56.20 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
..-.++|+|.+|+|||||++.|.|-- +|..|.+.+++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 416 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY------------DVDRGQILVDG 416 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCeEEEECC
Confidence 34589999999999999999999532 24566666654
No 393
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.86 E-value=0.088 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|+|.+|+|||||++.|.|
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 345899999999999999999995
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.86 E-value=0.1 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+++.|+|.|.|++||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 395
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.11 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCCc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~~ 81 (454)
.-.+||+|..|+|||||++.|+|...
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34799999999999999999997443
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.68 E-value=0.1 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
-.+|+|..++|||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999973
No 397
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.66 E-value=0.11 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhcCC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
-.+||+|..|||||||++.|+|.-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999743
No 398
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.64 E-value=0.11 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
|.|.|+|.|+|||+|....|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999998
No 399
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.61 E-value=0.095 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|.|++|||||++.|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999995
No 400
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.59 E-value=0.12 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+.+.|+|.|.|+|||||+.+.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.57 E-value=0.094 Score=50.05 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEecCCCCCcHHHHHhhcC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-++|+|.||+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999953
No 402
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.57 E-value=0.095 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.+|+|||||++.|+|-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999953
No 403
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.51 E-value=0.072 Score=51.59 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=48.4
Q ss_pred ccccccchhccceEEEEEeccCCc--------------ceEEecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhc-c
Q 012870 142 GNKFLSHIREVDSILQVVRCFEDN--------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-K 206 (454)
Q Consensus 142 ~~~fl~~ir~aD~il~VvD~~~~~--------------~v~~v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~-~ 206 (454)
.++++..+.+||++++|+|+.++. +.+.+.|+.|.+ +.+..+...+.++.. .
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~-------------~~~~~~~~~~~~~~~g~ 80 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKA-------------DAAVTQQWKEHFENQGI 80 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGS-------------CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccC-------------CHHHHHHHHHHHHhcCC
Confidence 357788899999999999997643 234444555433 222222222333221 1
Q ss_pred cCCCccccchHHHHHHHHHHHHhhh
Q 012870 207 AKDSQSKLKEDAEKAALEKIQQALM 231 (454)
Q Consensus 207 ~~~~vSak~~~~~~~ll~~i~~~L~ 231 (454)
+...+||+++.++.++++.+.+.++
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cEEEEECCCcccHHHHHHHHHHHHH
Confidence 2224899999999988888877765
No 404
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.48 E-value=0.092 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|..++|||||+++|+|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999963
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.48 E-value=0.12 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.++.|+|.|.|+|||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
No 406
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.37 E-value=0.1 Score=48.05 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.--++|+|.|++|||||+..|++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999995
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.32 E-value=0.098 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-.++|+|.||+|||||++++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999953
No 408
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.30 E-value=0.1 Score=61.13 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
..-+|||||++|+|||||++.|.+- .+|..|.+.+++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl------------~~p~~G~I~iDG 1140 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF------------YDTLGGEIFIDG 1140 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS------------SCCSSSEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC------------ccCCCCEEEECC
Confidence 4568999999999999999999932 135566666654
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.17 E-value=0.11 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.3
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
-.|+|.|.|+|||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 410
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.14 E-value=0.12 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|||+|.++|||||+.+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 411
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.08 E-value=0.12 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhh
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+...|.++|.|++||||+.+.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.07 E-value=0.14 Score=47.59 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
....|+|+|.+++||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 413
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.05 E-value=0.14 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
..-.+||+|..|+|||||++.|+|.-
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34579999999999999999999743
No 414
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.92 E-value=0.087 Score=56.17 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
..-.++|+|.+|+|||||++.|.|-- +|..|.+.+++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 402 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDG 402 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 34589999999999999999999532 25567776654
No 415
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.87 E-value=0.1 Score=55.77 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
..-.++|+|.+|+|||||++.|.|-- +|..|.+.+++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~------------~~~~G~i~i~g 404 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI------------DPERGRVEVDE 404 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS------------CCSEEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCcEEEECC
Confidence 34589999999999999999999532 24567766654
No 416
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.75 E-value=0.12 Score=48.87 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.1
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
-|+|+|.|++|||||.++|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999973
No 417
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.75 E-value=0.28 Score=43.80 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=22.8
Q ss_pred ceeEEEecCCccCCCCcccccccccccchhccceEEEEEec
Q 012870 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~fl~~ir~aD~il~VvD~ 161 (454)
..+.++|||+... ......+..||.+++|++.
T Consensus 76 yD~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~ 107 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTP 107 (206)
T ss_dssp SSEEEEECCSSSS---------HHHHHHHHHCSEEEEEECS
T ss_pred CCEEEEECCCCCC---------HHHHHHHHHCCEEEEEecC
Confidence 4689999998741 1233446679999999875
No 418
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.71 E-value=0.15 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 54 ~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.....++|+|.||+|||||+++|.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445899999999999999999995
No 419
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.68 E-value=0.13 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-+++|+|.+++|||||++.|+|.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4458999999999999999999964
No 420
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.65 E-value=0.15 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+-.|+|||.+||||||+++.|+|
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45799999999999999999986
No 421
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.43 E-value=0.18 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.+||+|..|+|||||++.|+|-
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999964
No 422
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.36 E-value=0.13 Score=51.52 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
-.+|+|..||||||||++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999997
No 423
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.33 E-value=0.16 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-.++|||.+|||||||++.|.|
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45799999999999999999985
No 424
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.27 E-value=0.16 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
-|+.||+|.|+|||||+...|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHH
Confidence 4799999999999999999997
No 425
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.25 E-value=0.17 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.+||+|..|+|||||++.|+|-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999964
No 426
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.65 E-value=0.17 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEecCCCCCcHHHHHhhcC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
-|.|+|.||+|||||++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999954
No 427
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.51 E-value=0.14 Score=54.43 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.7
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
......|+|+|.+|||||||.++|.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 34557899999999999999999994
No 428
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.47 E-value=0.23 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.-.+||+|..|+|||||++.|+|-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999964
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.22 E-value=0.18 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.--++|+|.|++|||||+..+++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999995
No 430
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.05 E-value=0.16 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+.|+|.|.++|||||+.+.|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 431
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.04 E-value=0.25 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...+.|.|.||+|||||.+++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.00 E-value=0.18 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.6
Q ss_pred EEEEEecCCCCCcHHHHHhhcCC
Q 012870 58 RAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
.+||+|..|+|||||++.|+|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999643
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.99 E-value=0.19 Score=43.69 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.3
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
-.+|+|..++|||||+.||.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999986
No 434
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.83 E-value=0.26 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...-|.|+|.|+|||||....|+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33456678999999999999998
No 435
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.81 E-value=0.22 Score=49.96 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.6
Q ss_pred cccCCcEEEEEecCCCCCcHHHHHhh
Q 012870 52 KISMSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 52 ~~~~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+...||.|+|.+++|||||+..+.
T Consensus 29 ~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 29 RSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HhcCccEEEEECCCCCcHHHHHHHHH
Confidence 33557899999999999999999984
No 436
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.18 E-value=0.28 Score=47.75 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+++|.+||||||+++.|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 437
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.09 E-value=0.23 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
+..|.|+|.||+|||||.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34689999999999999999984
No 438
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.66 E-value=0.047 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
-++|+|.+++|||||+++|+|
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999995
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.57 E-value=0.3 Score=47.30 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|||.|.++|||||+.+.|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 440
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.53 E-value=0.27 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|+|+|.|++||||+.+.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 441
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.48 E-value=0.19 Score=47.13 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=17.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+-|+|-|.++|||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999998
No 442
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.29 E-value=0.22 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
.+-|+|-|.++|||||+.+.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999997
No 443
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.26 E-value=0.34 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
++.|+|.|.++|||||+.+.|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 444
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.86 E-value=0.31 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.4
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
--++|+|.|++|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999987776
No 445
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.80 E-value=0.35 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
++..|+++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345689999999999999999984
No 446
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.65 E-value=0.28 Score=57.27 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.+||||.+|+|||||++.|.|-
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999963
No 447
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.54 E-value=0.18 Score=57.00 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..|+|||||++.|+|.
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447999999999999999999964
No 448
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.52 E-value=0.34 Score=54.87 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|..|+|||||++.|+|+
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999964
No 449
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.34 E-value=0.32 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.--++|+|.|++|||||++.|++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999953
No 450
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.32 E-value=0.31 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-.++|||.+|+|||||++.|.|
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 445899999999999999999995
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.19 E-value=0.37 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...-|.++|.|+|||||+.++|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999998
No 452
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=85.12 E-value=0.22 Score=47.59 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=45.1
Q ss_pred cccccchhccceEEEEEeccCCcceEE--ecCccCCCChhHHHhHhhhcccHHHHHHHHHHHHhc-ccCCCccccchHHH
Q 012870 143 NKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAE 219 (454)
Q Consensus 143 ~~fl~~ir~aD~il~VvD~~~~~~v~~--v~~~~dp~~di~~l~~el~l~d~~~l~~~~~~~~~~-~~~~~vSak~~~~~ 219 (454)
++++..+.++|++++|+|+.++..... +. .. ...-+-++|+ .++.+.+..+...+.+++. .+. .+||+++.++
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK-~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi 88 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNK-VDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRK 88 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEEC-GGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEEC-ccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCH
Confidence 467788999999999999876432110 00 00 0111222232 3333333333333333321 233 5899999998
Q ss_pred HHHHHHHHHh
Q 012870 220 KAALEKIQQA 229 (454)
Q Consensus 220 ~~ll~~i~~~ 229 (454)
.+|++.+.+.
T Consensus 89 ~~L~~~l~~~ 98 (262)
T 3cnl_A 89 VLLKKLSFDR 98 (262)
T ss_dssp HHHHHHCCCT
T ss_pred HHHHHHHHHh
Confidence 8888776554
No 453
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.00 E-value=0.42 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
....+.|.|.||+|||||.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.94 E-value=0.41 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
|...|+|+|.|++|||||...|..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999983
No 455
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.75 E-value=0.35 Score=41.85 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.9
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
...+.|.|.||+|||||..++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999998
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=84.74 E-value=0.58 Score=42.91 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=34.5
Q ss_pred ccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEEEechhhhHHhcC
Q 012870 256 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTE 307 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~iSA~~E~~l~~ 307 (454)
...|+++|+||.| +.+. +....++.+.++...+.+++++||+...++.+
T Consensus 144 ~~~piilVgNK~D--L~~~-r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 144 EDIPIILVGNKSD--LVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp TTSCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCCcEEEEEEChH--HhcC-ceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 3689999999985 4322 13345566667777788999999998766633
No 457
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.65 E-value=0.38 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..+.|.|.||+|||||..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999983
No 458
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.53 E-value=0.39 Score=43.86 Aligned_cols=32 Identities=6% Similarity=-0.075 Sum_probs=22.1
Q ss_pred ceeEEEecCCc-cCCCCcccccccccccchhccceEEEEEec
Q 012870 121 ASVEFVDIAGL-VKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (454)
Q Consensus 121 ~~i~lvDtpGl-~~~~~~~~~l~~~fl~~ir~aD~il~VvD~ 161 (454)
..+.++|||+. ... .....+..||.++++++.
T Consensus 68 yD~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~ 100 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE---------DLEALADGCDLLVIPSTP 100 (209)
T ss_dssp CSEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECS
T ss_pred CCEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecC
Confidence 45899999986 321 223445679999988874
No 459
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=84.44 E-value=0.17 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.4
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
.++|+|..|+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999863
No 460
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.41 E-value=0.62 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...+.|+|.||+|||++..+|..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999983
No 461
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.17 E-value=0.28 Score=53.13 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
-.++|+|..+||||||+|.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 468999999999999998764
No 462
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.14 E-value=0.45 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..|+|+|.++||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999999983
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.12 E-value=0.31 Score=45.97 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..-|+|.|.++|||||+.+.|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 464
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.99 E-value=0.38 Score=56.14 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcCCccccCCCCcccccceeeeeeeCC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~~~~~vs~~p~tT~~~~~~~~~~~d 103 (454)
..-++||||.+|+|||||++.|.|-. +|..|.+.+++
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~------------~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFY------------DPMAGSVFLDG 1094 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSS------------CCSEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECC
Confidence 34589999999999999999999532 25567776654
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.97 E-value=0.39 Score=50.39 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.7
Q ss_pred CcEEEEEecCCCCCcHHHHHh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAV 76 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaL 76 (454)
.-.++|+|.+++|||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 347999999999999999994
No 466
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.75 E-value=2 Score=36.30 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=33.8
Q ss_pred ccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEEEechhhhHHh
Q 012870 256 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAEL 305 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~iSA~~E~~l 305 (454)
...|+++++||.| ..+. .....++.+.++...+.+++++||+...++
T Consensus 110 ~~~~iilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 110 PSIVVAIAGNKCD--LTDV-REVMERDAKDYADSIHAIFVETSAKNAINI 156 (170)
T ss_dssp TTSEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred CCCcEEEEEECCc--cccc-cccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 4678999999985 3322 133456677777777899999999876544
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.71 E-value=0.26 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..+-|++.|.+++||||+.+.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.64 E-value=0.44 Score=43.44 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.6
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
.-.+|+|..++||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 356899999999999999986
No 469
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.59 E-value=0.34 Score=45.08 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.7
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.+.|.||+||||+..+|.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=83.44 E-value=0.46 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCCcHHHHHhhcCC
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg~~ 80 (454)
..-|.|+|.+++||||+.++|.+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3569999999999999999999644
No 471
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.33 E-value=0.67 Score=42.81 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|.|+|.|++|||||...|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999983
No 472
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.32 E-value=0.54 Score=45.94 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=19.0
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
-.+|+|..++|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 68899999999999999998
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.26 E-value=0.53 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+.|+|+|.|++||||+..+|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999984
No 474
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.26 E-value=0.47 Score=42.57 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.4
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
.-+.|.|.||+|||||+.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999973
No 475
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.25 E-value=0.44 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+.|.|.||+||||++++|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999985
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.15 E-value=0.34 Score=47.47 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-|.|.|.||+|||+|..++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35688999999999999999984
No 477
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.65 E-value=0.5 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-+.|.|.||+|||||++++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 478
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.57 E-value=0.76 Score=39.16 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
....|.|.|.||+|||++..++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999999998
No 479
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.37 E-value=0.7 Score=39.35 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
....|.|.|.||+|||++..++.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 34569999999999999999998
No 480
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=82.34 E-value=0.54 Score=41.69 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEEecCCCCCcHHHHHhh
Q 012870 58 RAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLt 77 (454)
.+.|.|.||+|||||..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999998
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.32 E-value=0.4 Score=44.35 Aligned_cols=22 Identities=45% Similarity=0.410 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..-|++-|.+++||||+.+.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999997
No 482
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=82.29 E-value=0.58 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+..-|.++|.|++||||+-+.|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999997
No 483
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.02 E-value=0.99 Score=46.47 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.0
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...+.-|.+.|.||+|||+|..++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456788999999999999999984
No 484
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.81 E-value=0.54 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-+.|.|.||+|||||.+++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 485
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=81.74 E-value=0.59 Score=45.83 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=34.1
Q ss_pred ccCcEEEEEeccccccCCCCCCc---cHHHHHHHHhhcCCcEEEechhhhHHhcCC
Q 012870 256 TMKPIIYVANVAESDLADPGSNP---HVNEVMNLASDLQSGRVTISAQVEAELTEL 308 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~~~~~---~~~~i~~~~~~~~~~~v~iSA~~E~~l~~l 308 (454)
..+|.++++||.| +.+. .. .++++.++.++.|.+++.+||.....+.+|
T Consensus 116 ~~~~~vivlnK~D--L~~~--~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 116 NDIQPIICITKMD--LIED--QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI 167 (307)
T ss_dssp TTCEEEEEEECGG--GCCC--HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTT
T ss_pred CCCCEEEEEECCc--cCch--hhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHH
Confidence 5788999999984 5432 12 245555555556889999999987776655
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=81.48 E-value=0.64 Score=42.04 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCcHHHHHhhcC
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
.=|.|.|.+++|||||.-+|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45889999999999999999843
No 487
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.42 E-value=3.2 Score=36.32 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=35.0
Q ss_pred ccCcEEEEEeccccccCCC-CCCccHHHHHHHHhhcCCc-EEEechhhhHHh
Q 012870 256 TMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG-RVTISAQVEAEL 305 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~-~~~~~~~~i~~~~~~~~~~-~v~iSA~~E~~l 305 (454)
...|+++|+||.| +.+. ......+++++++...+.+ ++++||+...++
T Consensus 126 ~~~p~ilv~nK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 126 DTAKTVLVGLKVD--LRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp TTSEEEEEEECGG--GCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred CCCCEEEEEEChh--hccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 4689999999985 4321 0134567788888877887 999999986555
No 488
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.32 E-value=0.63 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEecCCCCCcHHHHHhhc
Q 012870 58 RAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 58 ~I~ivG~pNvGKSTL~NaLtg 78 (454)
.+.|.|.||+|||||++++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999984
No 489
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=81.28 E-value=1.6 Score=38.66 Aligned_cols=50 Identities=28% Similarity=0.303 Sum_probs=35.0
Q ss_pred ccCcEEEEEeccccccCCCCCCccHHHHHHHHhhcCCcEEEechhhhHHhcCC
Q 012870 256 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTEL 308 (454)
Q Consensus 256 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~iSA~~E~~l~~l 308 (454)
...|+++|+||.| +.+. +....++.+.++...+.+++++||+...++.++
T Consensus 113 ~~~piilV~NK~D--l~~~-r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 113 EDIPIILVGNKSD--LVRX-REVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp SCCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred CCCeEEEEEechh--hhcc-ccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 3689999999985 3321 133455566666667788999999988776443
No 490
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=81.08 E-value=0.58 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCCcHHHHHhhc
Q 012870 57 LRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLtg 78 (454)
--++|+|..++|||||++++.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999985
No 491
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.97 E-value=0.76 Score=43.40 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
....+.|.|.||+|||||.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 445699999999999999999984
No 492
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=80.91 E-value=0.76 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCCcHHHHHhh
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLt 77 (454)
+.+.|.|+|.|+|||||+.++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La 73 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALE 73 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.83 E-value=0.6 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhcC
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg~ 79 (454)
..-.++|+|.|++|||||++.+++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3447899999999999999999953
No 494
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.49 E-value=0.65 Score=44.80 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCCcHHHHHhhc
Q 012870 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 55 ~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...-|.|.|.||+|||||.+++.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345689999999999999999984
No 495
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=80.42 E-value=0.53 Score=48.35 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-|.|.|.||+|||+|..++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999984
No 496
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=80.36 E-value=0.56 Score=43.00 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.1
Q ss_pred CcEEEEEecCCCCCcHHHHHhh
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLt 77 (454)
..=|+|=|..||||||+++.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3458888999999999999998
No 497
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.29 E-value=0.67 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred cEEEEEecCCCCCcHHHHHhh
Q 012870 57 LRAGIVGLPNVGKSTLFNAVV 77 (454)
Q Consensus 57 ~~I~ivG~pNvGKSTL~NaLt 77 (454)
--++|+|.|++|||||+..|+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 468999999999999999765
No 498
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.16 E-value=0.83 Score=42.32 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
..-|.|.|.||+|||||..++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999983
No 499
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.86 E-value=0.81 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCCcHHHHHhhc
Q 012870 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 56 ~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
No 500
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.80 E-value=0.38 Score=49.06 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=21.9
Q ss_pred ccCCcEEEEEecCCCCCcHHHHHhhc
Q 012870 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (454)
Q Consensus 53 ~~~~~~I~ivG~pNvGKSTL~NaLtg 78 (454)
...+.-|.+.|+||+|||+|..++.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34455688999999999999999984
Done!