BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012874
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 244/353 (69%), Positives = 285/353 (80%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+K
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
V D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT KIYGP TG DY+DNQ+RFSLLC
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
QAALEAPRILNLN+N YF G YGEDVVFV NDWHT + YLK Y+P G+Y++AKV FC
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
IHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384
P+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL 437
L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++L
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLL 362
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 166/356 (46%), Gaps = 33/356 (9%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFE 59
Query: 145 VGDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLL 203
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 60 FTDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL 114
Query: 204 CQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 263
+L A RI G + D+V A+DW ++ P Y++ P+ +
Sbjct: 115 ---SLAAARI----GAGVLPG-WRPDMVH-AHDWQAAMTPVYMRYAETPE-----IPSLL 160
Query: 264 CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323
IHNIA+QG+F F L LPA + I+ YN ++++K G+ + + TV
Sbjct: 161 TIHNIAFQGQFGANIFSKLALPAH-AFGMEGIEYYND------VSFLKGGLQTATALSTV 213
Query: 324 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMD 381
SP YA+E+++ E G+ L+ +I R + GIVNG+D WNP TD I Y A+ + +
Sbjct: 214 SPSYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN 272
Query: 382 AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL 437
+ L K+A+ + D P+ I RL QKG D++A A+ + +++VL
Sbjct: 273 -RALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVL 326
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVL 437
+ Q+ +L
Sbjct: 320 QGGQLALL 327
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVL 437
+ Q+ +L
Sbjct: 320 QGGQLALL 327
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVL 437
+ Q+ +L
Sbjct: 320 QGGQLALL 327
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 160/355 (45%), Gaps = 33/355 (9%)
Query: 86 NILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKV 145
N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFEF 60
Query: 146 GDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL- 114
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
+L A RI G + D V A+DW + P Y + P+ +
Sbjct: 115 --SLAAARI----GAGVLPG-WRPDXVH-AHDWQAAXTPVYXRYAETPE-----IPSLLT 161
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
IHNIA+QG+F F L LPA + I+ YN ++++K G+ + + TVS
Sbjct: 162 IHNIAFQGQFGANIFSKLALPAH-AFGXEGIEYYND------VSFLKGGLQTATALSTVS 214
Query: 325 PHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382
P YA+E+++ E G L+ +I R + GIVNG+D WNP TD I Y A+ + +
Sbjct: 215 PSYAEEILTAE-FGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN- 272
Query: 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL 437
+ L K+A+ + D P+ I RL QKG D+ A A+ + +++VL
Sbjct: 273 RALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVL 326
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE--LDNIIR 346
IDG+ P G W K G+L + VLTV H A S +D+G E D +I+
Sbjct: 100 IDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKDRGWETFTDAVIK 150
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 340
I+G+ P G W K G+L + VLTV H A S +++G E
Sbjct: 100 IEGFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKERGWE 142
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385
DK + L N R+ G+ ++ G Q+ + DK ++ D PL
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDKQ---RHHVLKAPDPSPL 191
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,852,270
Number of Sequences: 62578
Number of extensions: 535027
Number of successful extensions: 1138
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 20
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)