Query 012874
Match_columns 454
No_of_seqs 199 out of 1817
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 4.4E-54 9.6E-59 471.8 32.3 331 82-443 479-820 (977)
2 PRK14099 glycogen synthase; Pr 100.0 5.4E-53 1.2E-57 448.0 31.3 341 82-451 1-344 (485)
3 PRK14098 glycogen synthase; Pr 100.0 1.1E-52 2.3E-57 446.1 32.2 341 85-452 6-357 (489)
4 TIGR02095 glgA glycogen/starch 100.0 1.5E-48 3.3E-53 412.6 32.8 334 85-451 1-340 (473)
5 PRK00654 glgA glycogen synthas 100.0 2.7E-47 5.9E-52 402.7 31.4 327 85-452 1-332 (466)
6 PLN02316 synthase/transferase 100.0 1.1E-46 2.4E-51 419.9 33.1 301 77-443 580-881 (1036)
7 cd03791 GT1_Glycogen_synthase_ 100.0 1.2E-44 2.6E-49 382.0 32.8 338 86-451 1-345 (476)
8 COG0297 GlgA Glycogen synthase 100.0 2.4E-45 5.2E-50 384.4 26.7 333 85-448 1-340 (487)
9 PF08323 Glyco_transf_5: Starc 100.0 2.4E-39 5.2E-44 314.9 15.9 236 86-347 1-245 (245)
10 TIGR02094 more_P_ylases alpha- 100.0 6.4E-31 1.4E-35 283.7 25.5 334 87-443 1-436 (601)
11 cd04299 GT1_Glycogen_Phosphory 100.0 5.1E-27 1.1E-31 257.9 27.0 336 84-446 85-528 (778)
12 PRK10307 putative glycosyl tra 99.9 2.3E-22 4.9E-27 208.6 24.5 266 85-443 1-271 (412)
13 TIGR03449 mycothiol_MshA UDP-N 99.9 3E-21 6.4E-26 199.2 22.8 251 87-440 1-261 (405)
14 TIGR02472 sucr_P_syn_N sucrose 99.9 1.1E-20 2.4E-25 198.5 26.5 260 99-442 24-291 (439)
15 TIGR02149 glgA_Coryne glycogen 99.9 8.5E-21 1.8E-25 193.9 24.6 239 85-442 1-240 (388)
16 TIGR02468 sucrsPsyn_pln sucros 99.9 2.9E-20 6.2E-25 208.3 25.1 317 82-442 167-522 (1050)
17 cd03796 GT1_PIG-A_like This fa 99.9 2.3E-20 4.9E-25 193.1 20.9 231 86-442 1-235 (398)
18 PLN02871 UDP-sulfoquinovose:DA 99.8 1.5E-19 3.2E-24 191.2 22.8 246 82-443 56-302 (465)
19 TIGR02470 sucr_synth sucrose s 99.8 4E-19 8.8E-24 195.4 25.1 293 84-441 255-591 (784)
20 cd04962 GT1_like_5 This family 99.8 3.6E-19 7.8E-24 180.1 23.0 238 85-443 1-239 (371)
21 cd03819 GT1_WavL_like This fam 99.8 7.8E-18 1.7E-22 168.9 23.6 219 99-443 8-228 (355)
22 PLN02846 digalactosyldiacylgly 99.8 1.1E-18 2.5E-23 183.2 17.3 263 83-444 3-272 (462)
23 cd04955 GT1_like_6 This family 99.8 2.4E-17 5.1E-22 165.7 24.4 232 86-442 1-232 (363)
24 cd03800 GT1_Sucrose_synthase T 99.8 1.6E-17 3.4E-22 169.3 23.0 243 99-443 19-263 (398)
25 PRK10125 putative glycosyl tra 99.8 9.3E-18 2E-22 174.8 21.6 260 85-442 1-282 (405)
26 cd04951 GT1_WbdM_like This fam 99.8 2.1E-17 4.5E-22 165.7 23.2 229 86-443 1-231 (360)
27 PRK15484 lipopolysaccharide 1, 99.8 1.1E-17 2.4E-22 172.6 20.8 228 86-442 4-235 (380)
28 cd03805 GT1_ALG2_like This fam 99.8 7.6E-18 1.6E-22 172.3 19.1 251 85-443 1-257 (392)
29 cd03802 GT1_AviGT4_like This f 99.8 1.7E-17 3.8E-22 165.0 21.2 208 85-444 1-210 (335)
30 cd03793 GT1_Glycogen_synthase_ 99.8 1.7E-17 3.7E-22 176.0 20.8 290 88-429 5-326 (590)
31 cd03812 GT1_CapH_like This fam 99.8 4.2E-17 9.2E-22 163.8 21.6 233 86-443 1-235 (358)
32 KOG1111 N-acetylglucosaminyltr 99.8 1.9E-18 4.1E-23 170.9 11.4 236 85-443 1-238 (426)
33 cd03818 GT1_ExpC_like This fam 99.8 6.8E-17 1.5E-21 166.9 22.6 248 86-440 1-252 (396)
34 PLN00142 sucrose synthase 99.8 4.3E-17 9.3E-22 179.7 21.8 290 85-440 280-613 (815)
35 cd03816 GT1_ALG1_like This fam 99.7 1.7E-16 3.6E-21 165.7 23.5 252 84-442 3-280 (415)
36 cd03792 GT1_Trehalose_phosphor 99.7 1.7E-16 3.6E-21 162.4 22.1 228 86-442 1-232 (372)
37 TIGR03088 stp2 sugar transfera 99.7 1.8E-16 3.9E-21 161.7 22.1 231 85-443 2-241 (374)
38 cd03807 GT1_WbnK_like This fam 99.7 2.4E-16 5.3E-21 155.8 21.5 235 86-445 1-238 (365)
39 cd03794 GT1_wbuB_like This fam 99.7 2.3E-16 5E-21 157.0 21.2 260 86-443 1-262 (394)
40 PRK15427 colanic acid biosynth 99.7 3.1E-16 6.8E-21 163.3 21.1 147 226-443 117-265 (406)
41 cd03821 GT1_Bme6_like This fam 99.7 6.7E-16 1.5E-20 153.2 22.2 249 86-450 1-253 (375)
42 cd03795 GT1_like_4 This family 99.7 8.7E-16 1.9E-20 153.7 22.1 230 86-443 1-230 (357)
43 cd03817 GT1_UGDG_like This fam 99.7 6.2E-16 1.3E-20 153.7 20.6 240 86-442 1-244 (374)
44 cd03823 GT1_ExpE7_like This fa 99.7 2.1E-15 4.5E-20 149.6 21.1 230 86-446 1-235 (359)
45 cd03825 GT1_wcfI_like This fam 99.7 4.1E-15 9E-20 149.3 20.5 229 85-444 1-238 (365)
46 cd03799 GT1_amsK_like This is 99.7 1E-14 2.3E-19 145.8 22.6 220 86-443 1-222 (355)
47 PRK09922 UDP-D-galactose:(gluc 99.7 3E-15 6.5E-20 152.8 18.8 216 85-442 1-221 (359)
48 PRK15179 Vi polysaccharide bio 99.7 1.4E-14 3.1E-19 159.2 24.8 156 227-443 400-560 (694)
49 cd03814 GT1_like_2 This family 99.7 5.5E-15 1.2E-19 147.1 19.6 238 86-444 1-240 (364)
50 cd03809 GT1_mtfB_like This fam 99.7 5.6E-15 1.2E-19 147.4 18.9 240 86-447 1-242 (365)
51 cd05844 GT1_like_7 Glycosyltra 99.6 8.8E-15 1.9E-19 147.8 19.9 148 226-442 81-230 (367)
52 cd03801 GT1_YqgM_like This fam 99.6 3.7E-14 8E-19 139.2 23.4 239 86-442 1-241 (374)
53 cd03822 GT1_ecORF704_like This 99.6 3.7E-14 8.1E-19 141.5 21.3 224 86-444 1-229 (366)
54 PRK00726 murG undecaprenyldiph 99.6 3.4E-14 7.4E-19 144.6 19.5 226 85-446 2-228 (357)
55 cd03811 GT1_WabH_like This fam 99.6 7.3E-14 1.6E-18 136.9 19.7 229 86-443 1-232 (353)
56 PLN02275 transferase, transfer 99.6 7.7E-14 1.7E-18 143.5 20.3 152 226-443 99-273 (371)
57 cd03808 GT1_cap1E_like This fa 99.6 2.6E-13 5.6E-18 133.5 22.7 233 86-447 1-235 (359)
58 cd03798 GT1_wlbH_like This fam 99.6 3.1E-13 6.7E-18 133.4 23.1 242 87-443 1-245 (377)
59 cd03820 GT1_amsD_like This fam 99.6 1.6E-13 3.6E-18 134.4 20.7 218 86-443 1-221 (348)
60 cd03806 GT1_ALG11_like This fa 99.6 1.6E-13 3.5E-18 143.6 20.8 96 309-442 182-284 (419)
61 PF13439 Glyco_transf_4: Glyco 99.5 7.2E-14 1.6E-18 125.5 12.9 176 88-363 2-177 (177)
62 PF13579 Glyco_trans_4_4: Glyc 99.5 4.6E-14 9.9E-19 124.7 10.7 160 101-356 1-160 (160)
63 cd03785 GT1_MurG MurG is an N- 99.5 6.6E-13 1.4E-17 134.1 18.9 221 86-442 1-223 (350)
64 TIGR01133 murG undecaprenyldip 99.5 1.1E-12 2.4E-17 132.3 19.4 218 85-441 1-220 (348)
65 TIGR03087 stp1 sugar transfera 99.5 5.2E-14 1.1E-18 145.6 9.2 105 308-446 164-274 (397)
66 PLN02501 digalactosyldiacylgly 99.5 2.8E-12 6E-17 138.4 22.6 90 317-444 499-590 (794)
67 PRK15490 Vi polysaccharide bio 99.5 2.2E-12 4.7E-17 137.4 18.3 156 227-443 280-441 (578)
68 cd03813 GT1_like_3 This family 99.5 4.2E-13 9.2E-18 142.6 12.7 169 227-452 173-347 (475)
69 PLN02949 transferase, transfer 99.4 1.9E-11 4.2E-16 129.5 22.3 105 310-452 214-328 (463)
70 cd03804 GT1_wbaZ_like This fam 99.3 2.8E-11 6.1E-16 122.4 15.3 89 308-443 145-233 (351)
71 PF05693 Glycogen_syn: Glycoge 99.3 2.7E-11 5.9E-16 128.6 14.2 287 90-429 2-321 (633)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.3 3.3E-11 7.1E-16 127.8 14.1 164 227-440 131-308 (460)
73 PRK13609 diacylglycerol glucos 99.2 5.2E-10 1.1E-14 115.0 20.2 240 83-451 3-250 (380)
74 TIGR02400 trehalose_OtsA alpha 99.2 1.7E-10 3.8E-15 122.1 15.0 175 228-452 128-318 (456)
75 PF09314 DUF1972: Domain of un 99.2 1.8E-09 3.9E-14 100.5 16.8 182 86-358 3-185 (185)
76 TIGR02918 accessory Sec system 99.1 1.8E-09 3.8E-14 115.7 14.2 94 313-443 267-362 (500)
77 cd04946 GT1_AmsK_like This fam 99.0 5.1E-09 1.1E-13 109.2 15.0 145 226-443 126-275 (407)
78 PHA01630 putative group 1 glyc 99.0 5.4E-09 1.2E-13 106.3 12.8 96 309-442 86-184 (331)
79 PLN02605 monogalactosyldiacylg 98.9 2E-08 4.3E-13 103.8 16.4 97 315-441 149-252 (382)
80 PRK14501 putative bifunctional 98.9 9.4E-09 2E-13 114.9 14.1 163 228-440 134-309 (726)
81 PRK05749 3-deoxy-D-manno-octul 98.9 3.3E-08 7.2E-13 103.3 17.2 110 309-452 171-282 (425)
82 PHA01633 putative glycosyl tra 98.9 5.3E-08 1.1E-12 99.1 18.0 99 312-440 88-192 (335)
83 PLN03063 alpha,alpha-trehalose 98.9 1.4E-08 3E-13 114.3 13.9 175 228-452 148-338 (797)
84 TIGR02398 gluc_glyc_Psyn gluco 98.8 3.5E-08 7.6E-13 104.9 14.1 175 228-452 133-344 (487)
85 cd04949 GT1_gtfA_like This fam 98.8 3.6E-08 7.8E-13 100.4 13.1 92 313-443 154-247 (372)
86 PRK13608 diacylglycerol glucos 98.8 8.5E-08 1.8E-12 99.6 14.1 103 315-449 146-249 (391)
87 cd01635 Glycosyltransferase_GT 98.7 3.9E-07 8.6E-12 84.4 15.1 41 407-447 109-151 (229)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 1.8E-07 3.9E-12 95.1 13.6 149 227-441 88-241 (363)
89 PF13477 Glyco_trans_4_2: Glyc 98.7 6.1E-07 1.3E-11 78.6 14.4 138 86-324 1-139 (139)
90 PRK00025 lpxB lipid-A-disaccha 98.6 1.5E-06 3.2E-11 89.2 16.8 92 314-439 132-228 (380)
91 TIGR00236 wecB UDP-N-acetylglu 98.6 6.9E-07 1.5E-11 91.5 13.1 150 226-442 85-241 (365)
92 cd04950 GT1_like_1 Glycosyltra 98.5 2.8E-06 6.1E-11 87.5 16.1 97 308-440 145-241 (373)
93 PRK09814 beta-1,6-galactofuran 98.3 1.6E-05 3.5E-10 80.7 15.1 136 227-443 63-202 (333)
94 PLN03064 alpha,alpha-trehalose 98.1 2.3E-05 4.9E-10 89.0 13.6 152 228-429 232-390 (934)
95 TIGR00215 lpxB lipid-A-disacch 98.1 0.00012 2.7E-09 76.0 17.5 94 312-438 134-232 (385)
96 COG0058 GlgP Glucan phosphoryl 98.1 2.1E-05 4.6E-10 86.5 11.3 326 96-444 111-536 (750)
97 PRK14986 glycogen phosphorylas 98.0 0.00021 4.5E-09 79.7 18.2 213 227-444 313-595 (815)
98 cd04300 GT1_Glycogen_Phosphory 98.0 0.00036 7.9E-09 77.8 18.4 217 227-452 300-592 (797)
99 PRK14985 maltodextrin phosphor 97.7 0.0007 1.5E-08 75.4 15.4 221 227-452 302-591 (798)
100 PRK12446 undecaprenyldiphospho 97.7 0.0059 1.3E-07 62.8 21.4 30 100-129 11-40 (352)
101 TIGR02093 P_ylase glycogen/sta 97.6 0.0009 2E-08 74.5 14.4 218 227-452 297-589 (794)
102 KOG3742 Glycogen synthase [Car 97.5 5.1E-05 1.1E-09 78.1 2.1 170 229-428 175-351 (692)
103 PRK10117 trehalose-6-phosphate 97.4 0.0022 4.8E-08 68.2 14.1 175 228-453 124-315 (474)
104 PF00982 Glyco_transf_20: Glyc 97.4 0.00051 1.1E-08 73.3 9.5 178 227-453 141-336 (474)
105 PLN02205 alpha,alpha-trehalose 97.4 0.0023 4.9E-08 73.0 14.9 177 229-453 203-399 (854)
106 PF12000 Glyco_trans_4_3: Gkyc 97.3 0.0023 5E-08 59.0 11.2 40 312-362 131-170 (171)
107 PF00534 Glycos_transf_1: Glyc 97.2 0.00061 1.3E-08 61.5 6.2 54 387-442 2-58 (172)
108 KOG0853 Glycosyltransferase [C 97.1 0.0032 6.8E-08 66.9 10.0 118 314-453 207-339 (495)
109 COG0380 OtsA Trehalose-6-phosp 96.9 0.016 3.4E-07 61.7 14.2 176 228-453 148-342 (486)
110 PF04007 DUF354: Protein of un 96.9 0.063 1.4E-06 54.9 17.6 41 85-132 1-41 (335)
111 PF00343 Phosphorylase: Carboh 96.9 0.0052 1.1E-07 67.9 10.0 215 230-452 216-506 (713)
112 KOG1387 Glycosyltransferase [C 96.2 0.18 4E-06 51.2 15.2 87 315-440 221-314 (465)
113 COG0438 RfaG Glycosyltransfera 95.9 0.047 1E-06 52.3 9.5 91 316-443 150-242 (381)
114 KOG2941 Beta-1,4-mannosyltrans 95.9 0.45 9.7E-06 48.5 16.3 178 227-443 103-305 (444)
115 COG0707 MurG UDP-N-acetylgluco 95.8 0.9 1.9E-05 46.9 18.7 34 85-124 1-35 (357)
116 PF00862 Sucrose_synth: Sucros 95.7 0.11 2.3E-06 55.3 11.8 35 227-269 401-435 (550)
117 PF13692 Glyco_trans_1_4: Glyc 95.1 0.025 5.4E-07 48.8 4.0 41 402-442 2-45 (135)
118 PF11997 DUF3492: Domain of un 93.7 0.38 8.3E-06 47.6 9.3 43 85-128 1-43 (268)
119 COG1817 Uncharacterized protei 91.7 6.9 0.00015 39.6 14.8 41 85-132 1-41 (346)
120 PF08288 PIGA: PIGA (GPI ancho 89.9 1.8 3.8E-05 35.6 7.3 34 227-268 50-85 (90)
121 TIGR03568 NeuC_NnaA UDP-N-acet 89.2 13 0.00027 38.4 15.1 38 315-361 143-181 (365)
122 PF06925 MGDG_synth: Monogalac 86.6 3.6 7.8E-05 37.4 8.3 23 316-341 137-159 (169)
123 PF01975 SurE: Survival protei 83.5 1.5 3.3E-05 41.4 4.3 39 85-130 1-39 (196)
124 PF02350 Epimerase_2: UDP-N-ac 81.8 15 0.00033 37.6 11.3 160 227-452 67-235 (346)
125 PF13528 Glyco_trans_1_3: Glyc 81.6 20 0.00043 35.4 11.8 36 85-127 1-36 (318)
126 TIGR00661 MJ1255 conserved hyp 80.7 9.7 0.00021 38.2 9.3 35 86-127 1-36 (321)
127 cd03784 GT1_Gtf_like This fami 80.0 2.5 5.5E-05 43.5 4.9 38 85-128 1-38 (401)
128 PF02951 GSH-S_N: Prokaryotic 79.6 2.5 5.4E-05 36.7 3.9 41 85-128 1-41 (119)
129 PF03033 Glyco_transf_28: Glyc 74.0 4.5 9.8E-05 34.8 4.1 21 107-127 15-35 (139)
130 COG0763 LpxB Lipid A disacchar 68.9 1E+02 0.0022 32.2 13.0 52 387-439 175-230 (381)
131 TIGR01915 npdG NADPH-dependent 66.1 8.2 0.00018 36.7 4.3 33 85-127 1-33 (219)
132 TIGR03713 acc_sec_asp1 accesso 62.6 12 0.00026 40.7 5.2 39 403-442 320-362 (519)
133 COG2910 Putative NADH-flavin r 60.4 12 0.00025 35.3 3.9 34 85-128 1-34 (211)
134 PF03358 FMN_red: NADPH-depend 59.0 19 0.00041 31.7 5.1 40 85-127 1-40 (152)
135 PHA03392 egt ecdysteroid UDP-g 58.9 7.8 0.00017 41.9 3.0 39 85-128 21-59 (507)
136 PF11440 AGT: DNA alpha-glucos 56.8 2.2E+02 0.0049 28.7 12.6 39 401-439 179-221 (355)
137 PRK08305 spoVFB dipicolinate s 56.0 22 0.00048 33.6 5.2 37 83-127 4-42 (196)
138 PLN00016 RNA-binding protein; 54.8 22 0.00047 36.6 5.4 38 84-127 52-89 (378)
139 PF12038 DUF3524: Domain of un 54.3 1.3E+02 0.0029 27.7 9.7 25 306-332 111-135 (168)
140 PRK00207 sulfur transfer compl 53.4 27 0.00058 30.6 4.9 38 85-125 1-39 (128)
141 PRK06249 2-dehydropantoate 2-r 51.2 23 0.00049 35.6 4.8 35 82-127 3-37 (313)
142 TIGR01380 glut_syn glutathione 50.1 17 0.00036 36.7 3.6 41 85-128 1-41 (312)
143 PRK13932 stationary phase surv 49.7 23 0.00049 35.0 4.3 40 83-130 4-43 (257)
144 COG1819 Glycosyl transferases, 49.7 18 0.00039 38.0 3.9 38 84-127 1-38 (406)
145 PRK09271 flavodoxin; Provision 48.2 32 0.00069 31.0 4.8 36 85-125 1-36 (160)
146 PF08660 Alg14: Oligosaccharid 47.8 41 0.0009 30.9 5.5 35 227-263 92-126 (170)
147 PRK09739 hypothetical protein; 45.8 46 0.00099 31.0 5.6 43 82-127 1-43 (199)
148 PF02441 Flavoprotein: Flavopr 45.5 40 0.00086 29.2 4.8 36 85-127 1-36 (129)
149 TIGR00087 surE 5'/3'-nucleotid 45.2 28 0.00062 34.0 4.2 38 85-130 1-38 (244)
150 CHL00194 ycf39 Ycf39; Provisio 43.8 31 0.00066 34.4 4.4 27 101-127 7-33 (317)
151 PRK06756 flavodoxin; Provision 42.6 44 0.00095 29.4 4.7 37 85-126 2-38 (148)
152 PF00201 UDPGT: UDP-glucoronos 41.0 9.8 0.00021 40.6 0.3 28 101-128 10-37 (500)
153 CHL00072 chlL photochlorophyll 40.8 33 0.0007 34.3 4.0 33 85-125 1-35 (290)
154 PRK05246 glutathione synthetas 40.4 28 0.00061 35.0 3.5 41 85-128 2-42 (316)
155 PRK10037 cell division protein 40.1 44 0.00095 32.2 4.7 34 85-124 1-36 (250)
156 PLN02166 dTDP-glucose 4,6-dehy 40.0 37 0.0008 36.0 4.5 35 82-126 118-152 (436)
157 PF06564 YhjQ: YhjQ protein; 39.9 46 0.001 32.5 4.7 34 85-124 1-36 (243)
158 PLN02695 GDP-D-mannose-3',5'-e 38.8 41 0.00089 34.5 4.5 34 83-126 20-53 (370)
159 COG0496 SurE Predicted acid ph 38.5 38 0.00082 33.3 3.9 38 85-130 1-38 (252)
160 COG1090 Predicted nucleoside-d 38.2 27 0.00058 34.9 2.8 31 99-129 3-33 (297)
161 TIGR00715 precor6x_red precorr 38.1 44 0.00095 32.9 4.3 32 85-127 1-32 (256)
162 PRK13933 stationary phase surv 37.7 42 0.00091 33.0 4.1 38 85-130 1-38 (253)
163 PRK06522 2-dehydropantoate 2-r 37.0 43 0.00092 32.9 4.1 32 85-127 1-32 (304)
164 PRK13935 stationary phase surv 36.8 44 0.00095 32.9 4.0 38 85-130 1-38 (253)
165 PRK14619 NAD(P)H-dependent gly 36.0 53 0.0012 32.8 4.7 34 83-127 3-36 (308)
166 COG2085 Predicted dinucleotide 36.0 41 0.0009 32.2 3.6 29 101-129 7-35 (211)
167 TIGR01007 eps_fam capsular exo 35.6 70 0.0015 29.6 5.2 38 84-125 16-53 (204)
168 PRK08309 short chain dehydroge 35.5 56 0.0012 30.1 4.4 26 101-127 7-32 (177)
169 TIGR01281 DPOR_bchL light-inde 35.5 45 0.00098 32.4 4.0 32 85-124 1-34 (268)
170 PRK05708 2-dehydropantoate 2-r 35.4 45 0.00097 33.4 4.0 33 84-127 2-34 (305)
171 TIGR01754 flav_RNR ribonucleot 35.4 59 0.0013 28.4 4.4 35 85-124 1-35 (140)
172 PRK08105 flavodoxin; Provision 34.9 57 0.0012 29.1 4.2 28 99-126 11-38 (149)
173 KOG1050 Trehalose-6-phosphate 34.6 1.2E+02 0.0027 34.4 7.6 88 348-452 239-335 (732)
174 PRK07308 flavodoxin; Validated 34.5 63 0.0014 28.4 4.4 27 99-125 11-37 (146)
175 PF02374 ArsA_ATPase: Anion-tr 34.3 48 0.001 33.4 4.0 36 85-127 1-38 (305)
176 PRK12921 2-dehydropantoate 2-r 33.7 51 0.0011 32.5 4.1 31 85-126 1-31 (305)
177 COG4635 HemG Flavodoxin [Energ 33.7 65 0.0014 29.6 4.3 36 85-125 1-36 (175)
178 COG1763 MobB Molybdopterin-gua 33.5 71 0.0015 29.2 4.6 38 85-127 2-39 (161)
179 PRK13934 stationary phase surv 33.5 54 0.0012 32.6 4.1 38 85-130 1-38 (266)
180 COG0003 ArsA Predicted ATPase 32.9 63 0.0014 33.0 4.6 36 85-127 2-39 (322)
181 COG0702 Predicted nucleoside-d 32.9 52 0.0011 31.3 3.9 31 100-130 6-36 (275)
182 PLN00198 anthocyanidin reducta 32.8 70 0.0015 32.0 5.0 27 101-127 16-42 (338)
183 PRK10427 putative PTS system f 32.5 82 0.0018 27.1 4.6 39 85-128 3-43 (114)
184 PF00185 OTCace: Aspartate/orn 32.3 62 0.0013 29.2 4.0 37 83-128 1-37 (158)
185 PRK07454 short chain dehydroge 31.9 62 0.0013 30.4 4.2 35 84-127 5-39 (241)
186 PF10727 Rossmann-like: Rossma 31.8 35 0.00077 29.8 2.3 35 82-127 8-42 (127)
187 PRK10675 UDP-galactose-4-epime 31.7 58 0.0012 32.4 4.1 25 101-125 7-31 (338)
188 PRK00346 surE 5'(3')-nucleotid 31.6 62 0.0013 31.8 4.2 38 85-130 1-38 (250)
189 PF02606 LpxK: Tetraacyldisacc 30.9 56 0.0012 33.3 3.9 43 84-131 34-78 (326)
190 PRK09004 FMN-binding protein M 30.4 77 0.0017 28.2 4.3 27 99-125 11-37 (146)
191 PLN02206 UDP-glucuronate decar 30.2 66 0.0014 34.1 4.4 33 83-125 118-150 (442)
192 COG1091 RfbD dTDP-4-dehydrorha 30.2 1.1E+02 0.0023 30.8 5.5 18 257-274 91-108 (281)
193 PLN02572 UDP-sulfoquinovose sy 30.2 80 0.0017 33.4 5.1 25 101-125 54-78 (442)
194 PRK06719 precorrin-2 dehydroge 30.1 43 0.00094 30.2 2.6 35 83-128 12-46 (157)
195 PF13460 NAD_binding_10: NADH( 30.0 47 0.001 29.7 2.9 30 100-129 4-33 (183)
196 PRK09730 putative NAD(P)-bindi 30.0 62 0.0013 30.3 3.8 27 101-127 8-34 (247)
197 PRK13849 putative crown gall t 29.6 92 0.002 30.0 5.0 35 85-125 1-37 (231)
198 PLN02778 3,5-epimerase/4-reduc 29.5 70 0.0015 31.8 4.3 32 83-124 8-39 (298)
199 COG0716 FldA Flavodoxins [Ener 29.4 75 0.0016 28.2 4.1 36 85-125 2-37 (151)
200 COG3660 Predicted nucleoside-d 29.4 3.5E+02 0.0075 27.2 8.7 25 225-250 68-92 (329)
201 PRK13234 nifH nitrogenase redu 29.4 97 0.0021 30.9 5.3 37 82-125 1-39 (295)
202 PRK08655 prephenate dehydrogen 28.9 65 0.0014 34.2 4.1 33 85-127 1-33 (437)
203 PLN02427 UDP-apiose/xylose syn 28.5 76 0.0016 32.5 4.5 34 83-126 13-47 (386)
204 PRK01906 tetraacyldisaccharide 28.4 77 0.0017 32.5 4.4 41 85-130 56-98 (338)
205 KOG1429 dTDP-glucose 4-6-dehyd 28.4 81 0.0018 31.9 4.3 34 83-126 26-59 (350)
206 PRK05723 flavodoxin; Provision 27.9 88 0.0019 28.1 4.2 36 85-125 1-36 (151)
207 PF03446 NAD_binding_2: NAD bi 27.8 86 0.0019 28.1 4.2 31 85-126 2-32 (163)
208 PRK05693 short chain dehydroge 27.8 69 0.0015 30.8 3.8 34 85-127 1-34 (274)
209 PRK11104 hemG protoporphyrinog 27.8 76 0.0016 29.2 3.9 36 85-126 1-36 (177)
210 COG4088 Predicted nucleotide k 27.6 57 0.0012 31.5 3.0 39 85-128 1-39 (261)
211 PRK12827 short chain dehydroge 27.5 85 0.0018 29.3 4.3 34 83-126 5-38 (249)
212 cd02071 MM_CoA_mut_B12_BD meth 27.3 2.6E+02 0.0056 23.8 6.9 15 346-360 24-38 (122)
213 PRK11199 tyrA bifunctional cho 27.2 73 0.0016 33.0 4.0 35 83-127 97-131 (374)
214 PRK13869 plasmid-partitioning 27.1 1.8E+02 0.0039 30.5 7.0 36 83-124 119-156 (405)
215 PF02525 Flavodoxin_2: Flavodo 26.9 99 0.0021 28.5 4.6 38 85-125 1-40 (199)
216 PRK05920 aromatic acid decarbo 26.8 1.1E+02 0.0024 29.0 4.9 36 84-127 3-39 (204)
217 TIGR00682 lpxK tetraacyldisacc 26.8 87 0.0019 31.8 4.4 41 85-130 28-70 (311)
218 PF00070 Pyr_redox: Pyridine n 26.6 68 0.0015 24.9 2.9 27 102-128 6-32 (80)
219 PLN02662 cinnamyl-alcohol dehy 26.6 1.1E+02 0.0023 30.1 5.1 27 101-127 11-37 (322)
220 PRK06924 short chain dehydroge 26.6 79 0.0017 29.8 3.9 25 100-127 10-34 (251)
221 TIGR03371 cellulose_yhjQ cellu 26.6 1E+02 0.0022 29.2 4.7 35 85-125 1-37 (246)
222 TIGR01426 MGT glycosyltransfer 26.5 49 0.0011 34.0 2.6 20 108-127 13-32 (392)
223 COG4671 Predicted glycosyl tra 26.2 6.1E+02 0.013 26.5 10.2 38 84-127 9-50 (400)
224 cd02040 NifH NifH gene encodes 26.2 1E+02 0.0022 29.6 4.7 25 101-125 10-36 (270)
225 PRK06703 flavodoxin; Provision 26.0 1.2E+02 0.0025 26.7 4.7 37 85-126 2-38 (151)
226 PRK06849 hypothetical protein; 26.0 93 0.002 32.1 4.6 35 83-127 3-37 (389)
227 PLN02896 cinnamyl-alcohol dehy 25.7 96 0.0021 31.3 4.6 34 83-126 9-42 (353)
228 KOG2452 Formyltetrahydrofolate 25.5 96 0.0021 33.1 4.4 30 85-125 1-30 (881)
229 PRK05993 short chain dehydroge 25.5 92 0.002 30.2 4.2 25 100-127 13-37 (277)
230 COG0569 TrkA K+ transport syst 25.3 56 0.0012 31.3 2.6 26 102-127 7-32 (225)
231 TIGR02622 CDP_4_6_dhtase CDP-g 25.2 95 0.0021 31.3 4.4 34 83-126 3-36 (349)
232 PLN00141 Tic62-NAD(P)-related 25.2 1E+02 0.0023 29.3 4.5 34 84-127 17-50 (251)
233 PLN02657 3,8-divinyl protochlo 25.2 1.3E+02 0.0029 31.2 5.6 34 84-127 60-93 (390)
234 PRK04148 hypothetical protein; 24.8 1E+02 0.0023 27.3 4.0 30 84-125 17-46 (134)
235 TIGR03453 partition_RepA plasm 24.7 1.2E+02 0.0026 31.4 5.2 37 83-125 102-140 (387)
236 TIGR01968 minD_bact septum sit 24.7 1E+02 0.0022 29.3 4.4 25 101-125 11-37 (261)
237 TIGR02195 heptsyl_trn_II lipop 24.5 1.7E+02 0.0037 29.2 6.1 55 387-443 161-219 (334)
238 TIGR00639 PurN phosphoribosylg 24.5 3.5E+02 0.0077 25.2 7.8 35 85-128 1-37 (190)
239 PLN02240 UDP-glucose 4-epimera 24.3 1E+02 0.0022 30.8 4.4 33 83-125 4-36 (352)
240 PRK06180 short chain dehydroge 23.9 99 0.0021 29.9 4.1 25 100-127 13-37 (277)
241 PRK12825 fabG 3-ketoacyl-(acyl 23.7 1.1E+02 0.0025 28.2 4.4 34 84-127 6-39 (249)
242 PRK05866 short chain dehydroge 23.6 1.4E+02 0.003 29.5 5.1 38 80-127 36-73 (293)
243 PRK11914 diacylglycerol kinase 23.6 1.8E+02 0.004 28.9 6.1 45 81-128 5-49 (306)
244 PRK05653 fabG 3-ketoacyl-(acyl 23.6 1.2E+02 0.0026 28.1 4.5 34 84-127 5-38 (246)
245 PRK05568 flavodoxin; Provision 23.5 1.4E+02 0.0031 25.7 4.7 28 99-126 11-38 (142)
246 PRK14494 putative molybdopteri 23.5 1.4E+02 0.003 28.9 4.9 38 85-127 1-38 (229)
247 PRK07102 short chain dehydroge 23.3 95 0.0021 29.2 3.8 25 100-127 10-34 (243)
248 PRK06179 short chain dehydroge 23.2 1.1E+02 0.0023 29.3 4.2 25 100-127 13-37 (270)
249 PRK01021 lpxB lipid-A-disaccha 23.1 1.1E+03 0.023 26.4 17.3 48 388-438 401-453 (608)
250 TIGR00640 acid_CoA_mut_C methy 23.1 3.7E+02 0.0081 23.5 7.2 16 345-360 26-41 (132)
251 PRK06953 short chain dehydroge 22.9 89 0.0019 29.0 3.5 27 101-127 8-34 (222)
252 COG1553 DsrE Uncharacterized c 22.9 1.7E+02 0.0037 25.7 4.8 39 85-126 1-40 (126)
253 PRK04155 chaperone protein Hch 22.8 1.7E+02 0.0037 29.3 5.6 45 84-128 49-100 (287)
254 COG0300 DltE Short-chain dehyd 22.7 1.4E+02 0.0029 29.7 4.8 27 100-129 15-41 (265)
255 PRK05647 purN phosphoribosylgl 22.6 2.3E+02 0.0049 26.7 6.1 34 85-127 2-37 (200)
256 PRK06101 short chain dehydroge 22.6 1E+02 0.0022 29.0 3.9 25 100-127 10-34 (240)
257 TIGR03466 HpnA hopanoid-associ 22.6 99 0.0021 30.3 3.9 27 101-127 7-33 (328)
258 PRK10446 ribosomal protein S6 22.3 90 0.002 31.0 3.5 35 85-127 1-35 (300)
259 COG2084 MmsB 3-hydroxyisobutyr 22.2 97 0.0021 31.1 3.7 32 85-127 1-32 (286)
260 PRK06182 short chain dehydroge 22.0 1.5E+02 0.0032 28.5 4.9 25 100-127 12-36 (273)
261 PRK08177 short chain dehydroge 21.9 1.1E+02 0.0023 28.5 3.8 25 100-127 10-34 (225)
262 PRK07577 short chain dehydroge 21.8 1.3E+02 0.0029 27.8 4.4 25 100-127 12-36 (234)
263 PF02635 DrsE: DsrE/DsrF-like 21.6 2.3E+02 0.005 23.1 5.5 40 85-127 1-43 (122)
264 PRK08267 short chain dehydroge 21.5 1.1E+02 0.0024 29.0 3.9 27 101-127 8-34 (260)
265 cd01452 VWA_26S_proteasome_sub 21.5 2.3E+02 0.0049 26.6 5.8 50 403-453 109-159 (187)
266 PF09140 MipZ: ATPase MipZ; I 21.5 1.5E+02 0.0031 29.4 4.6 35 86-126 1-37 (261)
267 PRK15181 Vi polysaccharide bio 21.4 1.3E+02 0.0028 30.4 4.5 35 83-127 14-48 (348)
268 PRK14618 NAD(P)H-dependent gly 21.3 1.1E+02 0.0025 30.6 4.1 33 84-127 4-36 (328)
269 PF04464 Glyphos_transf: CDP-G 21.3 3.7E+02 0.0081 27.2 8.0 100 312-439 130-237 (369)
270 TIGR03029 EpsG chain length de 21.1 1.8E+02 0.004 28.2 5.4 38 83-124 101-138 (274)
271 TIGR02852 spore_dpaB dipicolin 21.1 1E+02 0.0022 28.9 3.4 28 100-127 8-37 (187)
272 PRK10538 malonic semialdehyde 20.9 1.3E+02 0.0029 28.4 4.3 33 85-127 1-33 (248)
273 PRK13931 stationary phase surv 20.6 1.4E+02 0.0029 29.6 4.3 39 85-130 1-42 (261)
274 TIGR01963 PHB_DH 3-hydroxybuty 20.6 1.2E+02 0.0026 28.4 3.9 27 101-127 8-34 (255)
275 PF04413 Glycos_transf_N: 3-De 20.5 6.8E+02 0.015 23.1 8.8 39 308-355 141-179 (186)
276 TIGR00872 gnd_rel 6-phosphoglu 20.4 1.4E+02 0.003 29.8 4.4 32 85-127 1-32 (298)
277 KOG1192 UDP-glucuronosyl and U 20.3 1.4E+02 0.0031 31.5 4.7 31 100-130 15-45 (496)
278 PRK06718 precorrin-2 dehydroge 20.1 89 0.0019 29.4 2.8 35 83-128 9-43 (202)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.4e-54 Score=471.82 Aligned_cols=331 Identities=33% Similarity=0.539 Sum_probs=271.2
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCC--c---ceEEEEEeCCeeeEEEEEE
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD--T---DVVIELKVGDKIEKVRFFH 156 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d--~---~~~~~v~~~~~~~~v~~~~ 156 (454)
.++|||+||++|+.||.++||+|++++.|+++|+++||+|+||+|.|+.....+. . ...+.+.+++....++++.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 3579999999999999999999999999999999999999999999987652211 1 1122222333333467788
Q ss_pred EeeCCceEEEecC--cc-hhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEE
Q 012874 157 CHKRGVDRVFVDH--PW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV 233 (454)
Q Consensus 157 ~~~~GV~~~~i~~--p~-~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH 233 (454)
...+||++|||++ |. |+.+ ..+|+ |+||..||.+||+++++++..++ ++|| |||
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R------~~iYg------~~Dn~~RF~~FsrAaLe~~~~~~----------~~PD-IIH 615 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWR------AQYYG------EHDDFKRFSYFSRAALELLYQSG----------KKPD-IIH 615 (977)
T ss_pred EEECCeeEEEEecCCchhccCC------CCCCC------CccHHHHHHHHHHHHHHHHHhcC----------CCCC-EEE
Confidence 8889999999985 32 5544 36886 67999999999999999998764 4899 999
Q ss_pred eCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHH
Q 012874 234 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAG 313 (454)
Q Consensus 234 ~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~ 313 (454)
||||||+++|++++..|...+ +.++|+|+|+||+.|||.++...+..+|+|...+.. .++++.. +..++|++|.+
T Consensus 616 ~HDW~TaLV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~---~d~le~~-~~~~iN~LK~G 690 (977)
T PLN02939 616 CHDWQTAFVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDR---PDRMQDN-AHGRINVVKGA 690 (977)
T ss_pred ECCccHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccC---hhhhhhc-cCCchHHHHHH
Confidence 999999998666555554444 367899999999999999987777778888665421 1222111 23578999999
Q ss_pred hhhCCceeccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHH
Q 012874 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (454)
Q Consensus 314 i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr 391 (454)
+.+||+|+|||+.|++++.+ .+|.+++.+++ +.++.+|+||||++.|+|.+|++|+.+|+++++ ++|..+|.++|
T Consensus 691 Iv~AD~VtTVSptYA~EI~t--e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl-~GK~~nK~aLR 767 (977)
T PLN02939 691 IVYSNIVTTVSPTYAQEVRS--EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDL-QGKAANKAALR 767 (977)
T ss_pred HHhCCeeEeeeHHHHHHHHH--HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhh-hhhhhhhHHHH
Confidence 99999999999999999985 57778877765 479999999999999999999999999999986 69999999999
Q ss_pred HHhCCCCC-CCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 392 AEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 392 ~~~Gl~~~-~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
+++|++.+ ++.|+|+|||||.++||+++|++|+..+.+.+++|+|+|+|+..
T Consensus 768 kelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~ 820 (977)
T PLN02939 768 KQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVP 820 (977)
T ss_pred HHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcH
Confidence 99999853 57899999999999999999999999887778999999999753
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=5.4e-53 Score=447.95 Aligned_cols=341 Identities=35% Similarity=0.522 Sum_probs=275.9
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcc-eEEEEEeCCeeeEEEEEEEeeC
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD-VVIELKVGDKIEKVRFFHCHKR 160 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~-~~~~v~~~~~~~~v~~~~~~~~ 160 (454)
|++|||+||++|+.||.++||+|++++.|+++|+++||+|.|++|.|+++.+..... ....+.+.-. ..++++++..+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG-GPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC-ceEEEEEEEeC
Confidence 467999999999999999999999999999999999999999999999885433221 1122222100 13567788889
Q ss_pred CceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchh
Q 012874 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (454)
Q Consensus 161 GV~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta 240 (454)
||++|||++|.|+.+ . ..+|++..|.+|.||..||.+||++++++++.+.. .++|| |||+|||+++
T Consensus 80 ~v~~~~~~~~~~f~r----~-~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~--------~~~pD-IiH~Hdw~~~ 145 (485)
T PRK14099 80 GLDLFVLDAPHLYDR----P-GNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVP--------GFVPD-IVHAHDWQAG 145 (485)
T ss_pred CceEEEEeChHhhCC----C-CCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhcc--------CCCCC-EEEECCcHHH
Confidence 999999999998775 1 24898777788999999999999999999876522 25899 9999999999
Q ss_pred HHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
++|.+++... ..++|+|+|+||+.+||.++...+..+|+++..+.. ++.+ +.+.+++++.++..||+|
T Consensus 146 l~~~~l~~~~-----~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~k~~i~~ad~v 213 (485)
T PRK14099 146 LAPAYLHYSG-----RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSL----DGVE---YYGGIGYLKAGLQLADRI 213 (485)
T ss_pred HHHHHHHhCC-----CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCc----hhhh---hCCCccHHHHHHHhcCee
Confidence 9998886421 146899999999999998877666667777654321 1111 123467899999999999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~ 398 (454)
+|||+.+++++.+ ..+|.+++++++ +.++.+|+||||++.|+|.+++.++.+|+.+++ ++|..+|+++|+++|++.
T Consensus 214 itVS~~~a~ei~~-~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~ 291 (485)
T PRK14099 214 TTVSPTYALEIQG-PEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETL-AARAANKAALQARFGLDP 291 (485)
T ss_pred eecChhHHHHHhc-ccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHH-HhHHHhHHHHHHHcCCCc
Confidence 9999999999985 345666666554 478999999999999999999999999998775 688889999999999987
Q ss_pred CCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHHh
Q 012874 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTF 451 (454)
Q Consensus 399 ~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~~ 451 (454)
+++.++|+++|||.++||+++|++|++.+.+.+++|+|+|+|++....++.++
T Consensus 292 ~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l 344 (485)
T PRK14099 292 DPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAA 344 (485)
T ss_pred ccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHH
Confidence 66789999999999999999999999999877899999999985444444443
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.1e-52 Score=446.08 Aligned_cols=341 Identities=28% Similarity=0.544 Sum_probs=272.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCccccc-CCc-c----eEEEEEeCCeeeEEEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDA-WDT-D----VVIELKVGDKIEKVRFFHCH 158 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~-~d~-~----~~~~v~~~~~~~~v~~~~~~ 158 (454)
|||+||++|+.||.|+||+|++++.|+++|+++||+|.|++|.|+.+.+. +.. . ..+.+.++......+..+..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVTA 85 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999987643 211 1 12223333222222222222
Q ss_pred e--CCceEEEecCcchhhhhhcCCCCccCCCC-CCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeC
Q 012874 159 K--RGVDRVFVDHPWFLAKVWGKTQSKIYGPR-TGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235 (454)
Q Consensus 159 ~--~GV~~~~i~~p~~~~k~w~~~~~~~y~~~-~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h 235 (454)
. .||++|+|++|.|+.+ ..+|++. +|.+|+||..||.+||++++++++.+. ++|| |||+|
T Consensus 86 ~~~~~v~~~~~~~~~~f~r------~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~----------~~pD-iiH~h 148 (489)
T PRK14098 86 LPSSKIQTYFLYNEKYFKR------NGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLG----------WKPD-IIHCH 148 (489)
T ss_pred ccCCCceEEEEeCHHHcCC------CCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcC----------CCCC-EEEec
Confidence 3 3799999999998876 4699875 678999999999999999999998753 5899 99999
Q ss_pred CCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhh
Q 012874 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 315 (454)
Q Consensus 236 ~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~ 315 (454)
||+++++|.+++..+.....+.++|+|+|+||+.+||.++...+..+ +|..+.. +.+. ....+|++|.++.
T Consensus 149 dw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~------~~~~--~~~~~n~lk~~i~ 219 (489)
T PRK14098 149 DWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCS------GLHR--EGDEVNMLYTGVE 219 (489)
T ss_pred CcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhh------hhhh--cCCcccHHHHHHH
Confidence 99999999999877644333468999999999999998765444333 4433321 1110 1235799999999
Q ss_pred hCCceeccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHH
Q 012874 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (454)
Q Consensus 316 ~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~ 393 (454)
.||+|+|||+.+++++.+...+|.+++++++ +.++.+|+||||++.|+|.+++.+..+|+.+++ ++|..+|+++|++
T Consensus 220 ~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~-~~k~~~k~~l~~~ 298 (489)
T PRK14098 220 HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERL-DGKLENKKALLEE 298 (489)
T ss_pred hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchh-hhHHHHHHHHHHH
Confidence 9999999999999999752245666766665 479999999999999999999999999998775 6888899999999
Q ss_pred hCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHHhh
Q 012874 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFI 452 (454)
Q Consensus 394 ~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~~~ 452 (454)
+|++.+++.|+|+|+|||.++||+++|++|++++.+.+++|+|+|+|+.++..+|.+++
T Consensus 299 lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~ 357 (489)
T PRK14098 299 VGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFA 357 (489)
T ss_pred hCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHH
Confidence 99998778999999999999999999999999998779999999999865555665544
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.5e-48 Score=412.62 Aligned_cols=334 Identities=41% Similarity=0.727 Sum_probs=273.0
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcc----eEEEEEeCCeeeEEEEEEEeeC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD----VVIELKVGDKIEKVRFFHCHKR 160 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~----~~~~v~~~~~~~~v~~~~~~~~ 160 (454)
|||+||++|++|+.++||+|+++.+|+++|+++||+|+|++|.|+...+.+... ....+.++++...+++++...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 899999999999999999999999999999999999999999999876544321 2234555666667888888899
Q ss_pred CceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchh
Q 012874 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (454)
Q Consensus 161 GV~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta 240 (454)
||++|+++++.++.+ . ..+|++ +|.|+..||.+|+++++++++++. ++|| |||+|||+++
T Consensus 81 ~v~~~~i~~~~~~~r----~-~~~y~~----~~~d~~~r~~~f~~a~~~~~~~~~----------~~~D-iiH~hdw~~~ 140 (473)
T TIGR02095 81 GVPVYFIDNPSLFDR----P-GGIYGD----DYPDNAERFAFFSRAAAELLSGLG----------WQPD-VVHAHDWHTA 140 (473)
T ss_pred CceEEEEECHHHcCC----C-CCCCCC----CCCCHHHHHHHHHHHHHHHHHhcC----------CCCC-EEEECCcHHH
Confidence 999999999877654 1 247864 688999999999999999998753 4899 9999999999
Q ss_pred HHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
+++.+++..+.. .++|+|+|+|++.+||.++...+..+++|..++.. +.++. ...+++++.++..||+|
T Consensus 141 ~~~~~l~~~~~~----~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~k~~~~~ad~v 209 (473)
T TIGR02095 141 LVPALLKAVYRP----NPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHM----EGLEF---YGRVNFLKGGIVYADRV 209 (473)
T ss_pred HHHHHHHhhccC----CCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCc----hhhhc---CCchHHHHHHHHhCCcC
Confidence 999998876421 14899999999999998876555556666543321 11111 23589999999999999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~ 398 (454)
++||+.+++++.+ ..+|.+++.+++ +.++.+|+||||.+.|+|..+++++.+|+..++ +++..+|+.+|+++|++.
T Consensus 210 ~tVS~~~~~ei~~-~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~ 287 (473)
T TIGR02095 210 TTVSPTYAREILT-PEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDL-AGKAENKEALQEELGLPV 287 (473)
T ss_pred eecCHhHHHHhcC-CcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccch-hhhhhhHHHHHHHcCCCc
Confidence 9999999999975 346666655443 579999999999999999999999999998764 577888999999999997
Q ss_pred CCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHHh
Q 012874 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTF 451 (454)
Q Consensus 399 ~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~~ 451 (454)
+++.++|+|+||+.++||++.|++|++++.+.+++|+|+|+|++.+..++.++
T Consensus 288 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~ 340 (473)
T TIGR02095 288 DDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALREL 340 (473)
T ss_pred cCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHH
Confidence 66889999999999999999999999999877899999999975444444443
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.7e-47 Score=402.70 Aligned_cols=327 Identities=39% Similarity=0.642 Sum_probs=260.0
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCC-cceEEEEEeCCeeeEEEEEEE--eeCC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD-TDVVIELKVGDKIEKVRFFHC--HKRG 161 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d-~~~~~~v~~~~~~~~v~~~~~--~~~G 161 (454)
|||+||++|++|+.++||+|+++.+|+++|+++||+|+|++|.|+...+... .....++. ..+++.. ..+|
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g 74 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLD------LFTVLFGHLEGDG 74 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEee------eEEEEEEeEEcCC
Confidence 8999999999999999999999999999999999999999999987643221 11111110 1233332 4589
Q ss_pred ceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhH
Q 012874 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (454)
Q Consensus 162 V~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~ 241 (454)
|++|++++|.++.+ ..+|+ |.|+..||.+||+++++++++++ ++|| |||+|||++++
T Consensus 75 v~v~~v~~~~~~~~------~~~y~------~~d~~~r~~~f~~~~~~~~~~~~----------~~pD-iiH~h~w~~~~ 131 (466)
T PRK00654 75 VPVYLIDAPHLFDR------PSGYG------YPDNGERFAFFSWAAAEFAEGLD----------PRPD-IVHAHDWHTGL 131 (466)
T ss_pred ceEEEEeCHHHcCC------CCCCC------CcChHHHHHHHHHHHHHHHHhcC----------CCCc-eEEECCcHHHH
Confidence 99999999887664 35776 67899999999999999998764 3899 99999999999
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCcee
Q 012874 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (454)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~Vi 321 (454)
++.+++..| ..+ +.++|+|+|+|++.+||.++...+..+++|+.++. .+.++ ....+++++.++..||+|+
T Consensus 132 ~~~~l~~~~-~~~-~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~ad~vi 202 (466)
T PRK00654 132 IPALLKEKY-WRG-YPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFH----LEGLE---FYGQISFLKAGLYYADRVT 202 (466)
T ss_pred HHHHHHHhh-hcc-CCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC----chhhh---cCCcccHHHHHHHhcCcCe
Confidence 999998765 222 35799999999999999887655555677655432 11111 1134688999999999999
Q ss_pred ccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCC
Q 012874 322 TVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (454)
Q Consensus 322 tVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~ 399 (454)
|||+.+++++.+ ..+|.+++..++ ..++.+|+||||.+.|+|.+++.++.+|+..++ ++|.++|+.+|+++|++ +
T Consensus 203 tvS~~~~~ei~~-~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~-~ 279 (466)
T PRK00654 203 TVSPTYAREITT-PEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDL-EGKAENKRALQERFGLP-D 279 (466)
T ss_pred eeCHHHHHHhcc-ccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhh-hchHHHHHHHHHHhCCC-C
Confidence 999999999875 345555554433 578999999999999999999999999988765 58888899999999998 3
Q ss_pred CCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHHhh
Q 012874 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFI 452 (454)
Q Consensus 400 ~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~~~ 452 (454)
.+.|+|+|+|||.++||++.|++|++++.+++++|+|+|+|+..+..++.+.+
T Consensus 280 ~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~ 332 (466)
T PRK00654 280 DDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALA 332 (466)
T ss_pred CCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHH
Confidence 46899999999999999999999999998779999999999765445555443
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.1e-46 Score=419.88 Aligned_cols=301 Identities=29% Similarity=0.489 Sum_probs=245.7
Q ss_pred cccccCCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEE
Q 012874 77 LMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFH 156 (454)
Q Consensus 77 ~~~~~~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~ 156 (454)
+.++++.+|||+||++|++|+.++||+|+++.+|+++|+++||+|+|++|.|+.+...+.........+......+++++
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 659 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWF 659 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEE
Confidence 55666778999999999999999999999999999999999999999999998754322111111122221112467888
Q ss_pred EeeCCceEEEecCcc-hhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeC
Q 012874 157 CHKRGVDRVFVDHPW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235 (454)
Q Consensus 157 ~~~~GV~~~~i~~p~-~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h 235 (454)
...+||++|+|+++. ++.+ ..+|+ |+|+..||.+||++++++++++. ++|| |||||
T Consensus 660 ~~~~GV~vyfl~~~~~~F~r------~~~Yg------~~Dd~~RF~~F~~Aale~l~~~~----------~~PD-IIHaH 716 (1036)
T PLN02316 660 GKVEGLSVYFLEPQNGMFWA------GCVYG------CRNDGERFGFFCHAALEFLLQSG----------FHPD-IIHCH 716 (1036)
T ss_pred EEECCcEEEEEeccccccCC------CCCCC------chhHHHHHHHHHHHHHHHHHhcC----------CCCC-EEEEC
Confidence 888999999999763 5443 25775 68999999999999999998764 4899 99999
Q ss_pred CCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhh
Q 012874 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 315 (454)
Q Consensus 236 ~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~ 315 (454)
||+++++|.+++..+...+ +.++|+|+|+|++.+++ +.++.++.
T Consensus 717 DW~talva~llk~~~~~~~-~~~~p~V~TiHnl~~~~-----------------------------------n~lk~~l~ 760 (1036)
T PLN02316 717 DWSSAPVAWLFKDHYAHYG-LSKARVVFTIHNLEFGA-----------------------------------NHIGKAMA 760 (1036)
T ss_pred CChHHHHHHHHHHhhhhhc-cCCCCEEEEeCCcccch-----------------------------------hHHHHHHH
Confidence 9999999999988665433 36789999999975421 23556788
Q ss_pred hCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhC
Q 012874 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (454)
Q Consensus 316 ~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~G 395 (454)
.||+|+|||+.+++++.. ..... -+..++.+|+||||++.|+|.+|++++.+|+.+++.++|..+++++|+++|
T Consensus 761 ~AD~ViTVS~tya~EI~~--~~~l~----~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lG 834 (1036)
T PLN02316 761 YADKATTVSPTYSREVSG--NSAIA----PHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLG 834 (1036)
T ss_pred HCCEEEeCCHHHHHHHHh--ccCcc----cccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhC
Confidence 999999999999999974 11110 023789999999999999999999999999988877889999999999999
Q ss_pred CCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 396 l~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
++. .+.|+|+|||||.+|||+++|++|++.+++.+++|||+|+|+..
T Consensus 835 L~~-~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~ 881 (1036)
T PLN02316 835 LKQ-ADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDP 881 (1036)
T ss_pred CCc-ccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCH
Confidence 983 46899999999999999999999999988778999999999753
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.2e-44 Score=381.98 Aligned_cols=338 Identities=42% Similarity=0.714 Sum_probs=267.3
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceE----EEEEeCCeeeEEEEEEEeeCC
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVV----IELKVGDKIEKVRFFHCHKRG 161 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~----~~v~~~~~~~~v~~~~~~~~G 161 (454)
||+||++|++|+.++||+|+++.+|+++|+++||+|+|++|.|+...+.+..... +.+..++....+++++...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 7999999999999999999999999999999999999999999987654432211 123344455567788888899
Q ss_pred ceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhH
Q 012874 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (454)
Q Consensus 162 V~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~ 241 (454)
|++|++++|.+..+ ..+| +.++.+|.|+..+|.+|+++++++++++. ++|| |||+|||++++
T Consensus 81 v~~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~f~~~~~~~l~~~~----------~~pD-viH~hd~~t~~ 142 (476)
T cd03791 81 VPVYFLDNPDYFDR------PGLY-DDSGYDYEDNAERFALFSRAALELLRRLG----------WKPD-IIHCHDWHTGL 142 (476)
T ss_pred ceEEEEcChHHcCC------CCCC-CccCCCCccHHHHHHHHHHHHHHHHHhcC----------CCCc-EEEECchHHHH
Confidence 99999999987654 2344 33456689999999999999999998763 4899 99999999999
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcc-cccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQ-FKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~-~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
++.+++..+.. ..+.++|+|+|+||+.++|.++...+...+++.. ... .+... ....+++++.++..||.|
T Consensus 143 ~~~~l~~~~~~-~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~ad~v 214 (476)
T cd03791 143 VPALLKEKYAD-PFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFH----IDGLE---FYGQVNFLKAGIVYADAV 214 (476)
T ss_pred HHHHHHHhhcc-ccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhh----hcccc---cCCcccHHHHHHHhcCcC
Confidence 99998876543 2246899999999999998776544433333210 000 01111 123568899999999999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~ 398 (454)
++||+.+++++.+ ..+|.+++.+++ ..++.+|+||||.+.|+|..++.+..+|+.+. .+++..+|+++++++|++.
T Consensus 215 ~~vS~~~~~~i~~-~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~-~~~~~~~k~~l~~~~g~~~ 292 (476)
T cd03791 215 TTVSPTYAREILT-PEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADD-LEGKAENKAALQEELGLPV 292 (476)
T ss_pred eecCHhHHHHhCC-CCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccc-cccHHHHHHHHHHHcCCCc
Confidence 9999999999875 345556655543 47999999999999999999888888887544 4688899999999999986
Q ss_pred CCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHHh
Q 012874 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTF 451 (454)
Q Consensus 399 ~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~~ 451 (454)
+++.++|+|+||+.++||++.|++|++.+.+.+++|+|+|+|++....++.+.
T Consensus 293 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~ 345 (476)
T cd03791 293 DPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALREL 345 (476)
T ss_pred CCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHH
Confidence 66899999999999999999999999999877899999999976544555443
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-45 Score=384.40 Aligned_cols=333 Identities=36% Similarity=0.591 Sum_probs=268.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcc--e--EEEEEeCCeeeEEEEEEEeeC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD--V--VIELKVGDKIEKVRFFHCHKR 160 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~--~--~~~v~~~~~~~~v~~~~~~~~ 160 (454)
|||++++.|+.|+.++||+|+++..|+.+|+++||+|.|+.|.|+...+.|... . ...+..+.+.......+..+.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999999999999999999999999999999999999999999777666532 1 122222222211111222223
Q ss_pred -CceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCch
Q 012874 161 -GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT 239 (454)
Q Consensus 161 -GV~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~t 239 (454)
|++.+++++|.++.| .....| .|.||..||.+|++++++.+..... .+.|| |||+||||+
T Consensus 81 ~~v~~~lid~~~~f~r----~~~~~~------~~~d~~~Rf~~F~~a~~~~~~~~~~--------~~~pD-IvH~hDWqt 141 (487)
T COG0297 81 GGVDLYLIDNPALFKR----PDSTLY------GYYDNAERFAFFSLAAAELAPLGLI--------SWLPD-IVHAHDWQT 141 (487)
T ss_pred CCCcEEEecChhhcCc----cccccC------CCCcHHHHHHHHHHHHHHHhhhcCC--------CCCCC-EEEeecHHH
Confidence 399999999887664 011233 4889999999999999998865431 14799 999999999
Q ss_pred hHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCc
Q 012874 240 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDM 319 (454)
Q Consensus 240 a~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~ 319 (454)
+++|.+++..+.. ...+|.|+|+||+.|||.++......++||..++.. ++++. ...+++||.++..||.
T Consensus 142 ~L~~~~lk~~~~~---~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~----~~l~~---~~~~~~lK~gi~~ad~ 211 (487)
T COG0297 142 GLLPAYLKQRYRS---GYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYAS----FGLEF---YGQISFLKGGLYYADA 211 (487)
T ss_pred HHHHHHHhhcccc---cccCCeEEEEeeceeecccchhhHHHhcCCHHHhhh----ceeee---cCcchhhhhhheeccE
Confidence 9999999986411 257999999999999999986666788999765542 12221 1347899999999999
Q ss_pred eeccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCC
Q 012874 320 VLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 397 (454)
Q Consensus 320 VitVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~ 397 (454)
|+|||+.|++|+.. +++|.++++.++ ..++++|.||+|.+.|+|.+|+++..+|+.++.. +|.++|.+|++++|++
T Consensus 212 vttVSptYa~Ei~t-~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~-~k~~nk~~L~~~~gL~ 289 (487)
T COG0297 212 VTTVSPTYAGEIYT-PEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLP-AKAENKVALQERLGLD 289 (487)
T ss_pred EEEECHHHHHhhcc-ccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchh-hhHHHHHHHHHHhCCC
Confidence 99999999999985 788888888775 3789999999999999999999999999988763 5999999999999999
Q ss_pred CCCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHH
Q 012874 398 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTL 448 (454)
Q Consensus 398 ~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l 448 (454)
.+.+.|++.++|||..|||+|++++|+..+++..+|+||+|+|+......+
T Consensus 290 ~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~ 340 (487)
T COG0297 290 VDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEAL 340 (487)
T ss_pred CCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHH
Confidence 888899999999999999999999999999998999999999965444433
No 9
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=2.4e-39 Score=314.95 Aligned_cols=236 Identities=41% Similarity=0.714 Sum_probs=175.8
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCC-cceEEE--------EEeCCeeeEEEEEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD-TDVVIE--------LKVGDKIEKVRFFH 156 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d-~~~~~~--------v~~~~~~~~v~~~~ 156 (454)
||+||++|+.||.++||+|+++.+|+++|+++||+|+|++|.|+..++... .....+ +.+.. ...+++++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 799999999999999999999999999999999999999999987665431 111111 11111 14567888
Q ss_pred EeeCCceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCC
Q 012874 157 CHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND 236 (454)
Q Consensus 157 ~~~~GV~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~ 236 (454)
...+||++|+++++.|+++ ..+|++. +.+|.|+..||.+||++++++++.++ ++|| ||||||
T Consensus 80 ~~~~~v~v~~i~~~~~f~r------~~iY~~~-~~~~~d~~~rf~~fs~a~le~~~~l~----------~~pD-IIH~hD 141 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDR------PGIYGDN-GGDYPDNAERFAFFSRAALELLKKLG----------WKPD-IIHCHD 141 (245)
T ss_dssp EEETTEEEEEEESHHHHGS------SSSSBST-SSBHTTHHHHHHHHHHHHHHHHCTCT-----------S-S-EEEEEC
T ss_pred EEcCCccEEEecChhhccc------cceeccC-CCcchhHHHHHHHHHHHHHHHHHhhC----------CCCC-EEEecC
Confidence 8889999999999998875 3599865 77899999999999999999999864 4899 999999
Q ss_pred CchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhh
Q 012874 237 WHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILE 316 (454)
Q Consensus 237 w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ 316 (454)
|||+++|.+++..++..+.+.++|+|+|+||+.|||.++.+.+..+|+|+..+.. .+.++ .+..+|++|.|+..
T Consensus 142 W~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~---~~~~~---~~~~in~lk~gi~~ 215 (245)
T PF08323_consen 142 WHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQN---LDEYE---FYGQINFLKAGIVY 215 (245)
T ss_dssp GGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-S---TTTTE---ETTEEEHHHHHHHH
T ss_pred chHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcc---ccccc---cccccCHHHHHHHh
Confidence 9999999999998776666678999999999999999988777778888654321 11221 23568999999999
Q ss_pred CCceeccCHHHHHHHHcCCCCCccchhhhcc
Q 012874 317 SDMVLTVSPHYAQELVSGEDKGVELDNIIRK 347 (454)
Q Consensus 317 ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~ 347 (454)
||+|+|||+.|++|+.+ +.+|.+|+++|++
T Consensus 216 AD~v~TVS~~Ya~Ei~~-~~~g~GL~~~l~~ 245 (245)
T PF08323_consen 216 ADKVTTVSPTYAREIQT-PEFGEGLEGLLRK 245 (245)
T ss_dssp SSEEEESSHHHHHHTTS-HHHHTT-HHHHH-
T ss_pred cCEeeeCCHHHHHHHhC-cccCCChHHHhcC
Confidence 99999999999999987 5567788877653
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.98 E-value=6.4e-31 Score=283.71 Aligned_cols=334 Identities=17% Similarity=0.177 Sum_probs=244.4
Q ss_pred EEEEecccC-----CCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcc------c---------ccCCc---------
Q 012874 87 ILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY------K---------DAWDT--------- 137 (454)
Q Consensus 87 Il~vs~e~~-----P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~------~---------~~~d~--------- 137 (454)
|+++|.||. | ...||+|...+....+++..|...+.+...|... . +.|+.
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 577888865 6 3689999999999999999999999998776431 1 12211
Q ss_pred -----ceEEEEEeCCeeeEEEEEEEeeCCceEEEecCcchhhhhhcCCCC-ccCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 012874 138 -----DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS-KIYGPRTGEDYQDNQLRFSLLCQAALEAP 211 (454)
Q Consensus 138 -----~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i~~p~~~~k~w~~~~~-~~y~~~~g~~~~d~~~r~~~~~~a~~~~i 211 (454)
...++|+++++...++++....+++++|+++++..-...|++.+. .+|++ |..++..++.+|+.++++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~----D~~~R~~Qe~fl~~a~l~~l 155 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG----DKEMRIAQEIVLGIGGVRAL 155 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 124667777777778888887889999999987511112222222 46763 23344445599999999999
Q ss_pred hhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCCC-------CCCCeEEEEEeCCcccCC--CCcccc---
Q 012874 212 RILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDF--- 279 (454)
Q Consensus 212 r~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~-------~~~~pvV~TiH~~~~~g~--~~~~~~--- 279 (454)
+.+. ++|| |||+||||++++++++.+..-..+. ..+..+|||+||+.+||. |+.+.+
T Consensus 156 ~~l~----------~~pd-viH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~ 224 (601)
T TIGR02094 156 RALG----------IDPD-VYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKY 224 (601)
T ss_pred HHcC----------CCce-EEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHH
Confidence 8764 4899 9999999999999886432111110 125789999999999997 876555
Q ss_pred -----ccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhc--cCCeEE
Q 012874 280 -----GLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKG 352 (454)
Q Consensus 280 -----~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~v 352 (454)
..++++...+.. .+.+.+.....+|+++.|+..||.|.+||+.+++-... -++ .+...++ ..++..
T Consensus 225 ~~~~~~~~gl~~~~~~~----~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~--l~~-~l~~~~~~~~~~i~g 297 (601)
T TIGR02094 225 FGDYAANLGLPREQLLA----LGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRK--MWQ-FLYPGYEEEEVPIGY 297 (601)
T ss_pred hhhhhhHhCCCHHHHHh----hhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHH--HHH-hhhhhcccccCCccc
Confidence 235676554321 12211101135799999999999999999998873221 011 1111112 356999
Q ss_pred EcCCCcCCCCCCCcccccccccCccc---------------------cccchHHHHHHHHH-------------------
Q 012874 353 IVNGMDVQEWNPLTDKYIGVKYDAST---------------------VMDAKPLLKEALQA------------------- 392 (454)
Q Consensus 353 IpNGiD~~~f~p~~~~~~~~~~~~~~---------------------~~~~k~~~k~~lr~------------------- 392 (454)
|.||||+..|+|.+++.|..+|..++ +.++|..+|++|++
T Consensus 298 ItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~ 377 (601)
T TIGR02094 298 VTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAI 377 (601)
T ss_pred eeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchh
Confidence 99999999999999999988888766 45789999999988
Q ss_pred --HhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc------CCcEEEEEecCCcc
Q 012874 393 --EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLVSITIR 443 (454)
Q Consensus 393 --~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~------~~v~lvIvG~G~~~ 443 (454)
++|++.+++.|+++|++||.+|||+++++++++.+.+ .++|||++|+|.+.
T Consensus 378 ~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~ 436 (601)
T TIGR02094 378 LMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPA 436 (601)
T ss_pred hhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcc
Confidence 5788888899999999999999999999999998863 47999999999865
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.96 E-value=5.1e-27 Score=257.90 Aligned_cols=336 Identities=20% Similarity=0.213 Sum_probs=239.2
Q ss_pred CceEEEEecccC-----CCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcc------c---------ccCCc------
Q 012874 84 GLNILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY------K---------DAWDT------ 137 (454)
Q Consensus 84 ~MkIl~vs~e~~-----P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~------~---------~~~d~------ 137 (454)
+-.++++|.||. | ...||+|...++...+++..|..++-|...|.+. . +.|+.
T Consensus 85 ~~~~aYFs~E~gl~~~lp-iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~ 163 (778)
T cd04299 85 PLVAAYFSMEFGLHESLP-IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLE 163 (778)
T ss_pred CCeeEEeccccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceE
Confidence 345559999976 6 4689999999999999999999999998766431 1 11211
Q ss_pred --------ceEEEEEeCCeeeEEEEEEEeeCCceEEEecCcchhhhhhcCCC-CccCCCCCCCCCcchHHH---HHHHHH
Q 012874 138 --------DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQ-SKIYGPRTGEDYQDNQLR---FSLLCQ 205 (454)
Q Consensus 138 --------~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i~~p~~~~k~w~~~~-~~~y~~~~g~~~~d~~~r---~~~~~~ 205 (454)
...+.|.++++...++++.....+|++|+++.+.+....+++.. ..+|+. |+..| +.+|+.
T Consensus 164 ~~~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-------D~~~Rl~Qe~~Lg~ 236 (778)
T cd04299 164 PVRDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-------DQETRIQQEILLGI 236 (778)
T ss_pred EEecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-------cHHHHHHHHHHHHH
Confidence 13455667776667888888888999999998764222233322 246763 56778 489999
Q ss_pred HHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH-----HHHHh-ccCCCC--CCCCeEEEEEeCCcccC--CCC
Q 012874 206 AALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-----YLKTM-YKPKGM--YKSAKVVFCIHNIAYQG--RFA 275 (454)
Q Consensus 206 a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~-----~l~~~-~~~~~~--~~~~pvV~TiH~~~~~g--~~~ 275 (454)
+.+++++.+. ++|| |||+||||++++++ ++... +..... ..+..+|||+||+.++| .|+
T Consensus 237 agl~~Lr~lg----------~~pd-ViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp 305 (778)
T cd04299 237 GGVRALRALG----------IKPT-VYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFP 305 (778)
T ss_pred HHHHHHHHhC----------CCCe-EEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCC
Confidence 9999998774 4799 99999999999998 44321 110000 13578999999999999 788
Q ss_pred ccccc--------cCCCCcccccccccccCCCCCc-ccchHHHHHHHhhhCCceeccCHHH---HHHHHcCCCCCccchh
Q 012874 276 FEDFG--------LLNLPAQFKSSFDFIDGYNKPV-RGRKINWMKAGILESDMVLTVSPHY---AQELVSGEDKGVELDN 343 (454)
Q Consensus 276 ~~~~~--------~l~lp~~~~~~~~~~~~~~k~~-~~~~~~~~k~~i~~ad~VitVS~~~---a~~l~~~~~~g~~l~~ 343 (454)
.+.+. .+|++...+.. .+.+.+. .+..+|+++.|+..||+|.+||+-+ ++++...-..|.++
T Consensus 306 ~~l~~~~~~~~~~~lgl~~~~~~~----lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~-- 379 (778)
T cd04299 306 PDLVERYFGPYARELGLSRDRFLA----LGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPV-- 379 (778)
T ss_pred HHHHHHHhhHHHHHcCCCHHHHhh----hccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCc--
Confidence 76552 35676543321 1222110 0135799999999999999999987 56655311123332
Q ss_pred hhccCCeEEEcCCCcCCCCC-CCccccccccc--------------------CccccccchHHHHHHHHHHh--------
Q 012874 344 IIRKTGIKGIVNGMDVQEWN-PLTDKYIGVKY--------------------DASTVMDAKPLLKEALQAEV-------- 394 (454)
Q Consensus 344 ~l~~~~i~vIpNGiD~~~f~-p~~~~~~~~~~--------------------~~~~~~~~k~~~k~~lr~~~-------- 394 (454)
.+.++..|.||||+..|. |..++.+.... .-.++.+.|..+|++|++.+
T Consensus 380 --~~~~i~~ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~ 457 (778)
T cd04299 380 --EEVPIGHVTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQW 457 (778)
T ss_pred --ccCceeceeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 246899999999999997 88776653221 11234567888888887764
Q ss_pred -------------CCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc------CCcEEEEEecCCccchH
Q 012874 395 -------------GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLVSITIRNYS 446 (454)
Q Consensus 395 -------------Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~------~~v~lvIvG~G~~~~~~ 446 (454)
+.+.|++.++|+|++|+.++||.+++++.++++.+ .++|||++|++.+.+..
T Consensus 458 ~~~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~ 528 (778)
T cd04299 458 LRRGASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEP 528 (778)
T ss_pred hhcCCchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchH
Confidence 55667899999999999999999999999888744 47999999999865443
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.90 E-value=2.3e-22 Score=208.64 Aligned_cols=266 Identities=19% Similarity=0.210 Sum_probs=165.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
|||++++..|+| ..||++.++.+|+++|+++||+|+|+++... +. .|+.... +....+.....+|+++
T Consensus 1 mkIlii~~~~~P--~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~-~~-~~~~~~~--------~~~~~~~~~~~~~i~v 68 (412)
T PRK10307 1 MKILVYGINYAP--ELTGIGKYTGEMAEWLAARGHEVRVITAPPY-YP-QWRVGEG--------YSAWRYRRESEGGVTV 68 (412)
T ss_pred CeEEEEecCCCC--CccchhhhHHHHHHHHHHCCCeEEEEecCCC-CC-CCCCCcc--------cccccceeeecCCeEE
Confidence 899999999988 4799999999999999999999999996521 11 1110000 0000011122468888
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHH-hhhhcccCCCCCCCCCCCCEEEEeCCCch--hH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHT--SL 241 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~-ir~l~~~~~~~~~~~~~pD~VIH~h~w~t--a~ 241 (454)
++++...... ..+ + ........|....... ++.. ..+|| |||+|.+.. +.
T Consensus 69 ~r~~~~~~~~---------~~~------~-~~~~~~~~~~~~~~~~~~~~~----------~~~~D-iv~~~~p~~~~~~ 121 (412)
T PRK10307 69 WRCPLYVPKQ---------PSG------L-KRLLHLGSFALSSFFPLLAQR----------RWRPD-RVIGVVPTLFCAP 121 (412)
T ss_pred EEccccCCCC---------ccH------H-HHHHHHHHHHHHHHHHHhhcc----------CCCCC-EEEEeCCcHHHHH
Confidence 7764211000 000 0 0011111122222222 2221 13799 999997542 33
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCC-cccccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp-~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
++.+++.. .++|+|+++|+..+.... ..+.. ..... .-...+++..++.+|.|
T Consensus 122 ~~~~~~~~-------~~~~~v~~~~d~~~~~~~------~~~~~~~~~~~-------------~~~~~~~~~~~~~ad~i 175 (412)
T PRK10307 122 GARLLARL-------SGARTWLHIQDYEVDAAF------GLGLLKGGKVA-------------RLATAFERSLLRRFDNV 175 (412)
T ss_pred HHHHHHHh-------hCCCEEEEeccCCHHHHH------HhCCccCcHHH-------------HHHHHHHHHHHhhCCEE
Confidence 33444443 578999999986432110 01110 00000 00123567788899999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~ 400 (454)
+++|+...+.+.+ ++. +..++.+||||+|.+.|.|... ..++.++++++++.
T Consensus 176 i~~S~~~~~~~~~---~~~------~~~~i~vi~ngvd~~~~~~~~~-----------------~~~~~~~~~~~~~~-- 227 (412)
T PRK10307 176 STISRSMMNKARE---KGV------AAEKVIFFPNWSEVARFQPVAD-----------------ADVDALRAQLGLPD-- 227 (412)
T ss_pred EecCHHHHHHHHH---cCC------CcccEEEECCCcCHhhcCCCCc-----------------cchHHHHHHcCCCC--
Confidence 9999999888864 332 2468999999999998876421 01234677888874
Q ss_pred CCcEEEEEcCCccccCHHHHHHHHhhcccC-CcEEEEEecCCcc
Q 012874 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLVSITIR 443 (454)
Q Consensus 401 ~~~lIlfvGRL~~qKG~d~LieA~~~l~~~-~v~lvIvG~G~~~ 443 (454)
+.++|+|+||+.++||++.|++|++.+.+. +++|+|+|+|+.+
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~ 271 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGK 271 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChhH
Confidence 568999999999999999999999988553 7999999999853
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.88 E-value=3e-21 Score=199.18 Aligned_cols=251 Identities=17% Similarity=0.243 Sum_probs=161.1
Q ss_pred EEEEecccCCCC-----CCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCC
Q 012874 87 ILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (454)
Q Consensus 87 Il~vs~e~~P~~-----~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~G 161 (454)
|++++....|+. ..||++.++.+|+++|+++||+|+|+++........ . ....+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~-~-------------------~~~~~~ 60 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP-V-------------------VEVAPG 60 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC-c-------------------cccCCC
Confidence 577888877753 269999999999999999999999999764321110 0 001357
Q ss_pred ceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHH-HHhhhhcccCCCCCCCCCCCCEEEEeCCCchh
Q 012874 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAAL-EAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (454)
Q Consensus 162 V~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~-~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta 240 (454)
++++.+....+.. .+ ...-...+..|....+ .++++. ..+|| |||+|+|.++
T Consensus 61 ~~v~~~~~~~~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~D-iih~h~~~~~ 113 (405)
T TIGR03449 61 VRVRNVVAGPYEG----------LD------KEDLPTQLCAFTGGVLRAEARHE----------PGYYD-LIHSHYWLSG 113 (405)
T ss_pred cEEEEecCCCccc----------CC------HHHHHHHHHHHHHHHHHHHhhcc----------CCCCC-eEEechHHHH
Confidence 7776654221100 00 0000011112222223 233321 23799 8999998887
Q ss_pred HHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
+++.+++.. .++|+|+|+|+...... ..+.....+.. .....+++..+..+|.+
T Consensus 114 ~~~~~~~~~-------~~~p~v~t~h~~~~~~~---~~~~~~~~~~~----------------~~~~~~e~~~~~~~d~v 167 (405)
T TIGR03449 114 QVGWLLRDR-------WGVPLVHTAHTLAAVKN---AALADGDTPEP----------------EARRIGEQQLVDNADRL 167 (405)
T ss_pred HHHHHHHHh-------cCCCEEEeccchHHHHH---HhccCCCCCch----------------HHHHHHHHHHHHhcCeE
Confidence 777666653 57899999998742110 00000000000 00122345677899999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~ 400 (454)
+++|+...+++.+ .++. ...++.+||||+|.+.|.|.. ++..+++++++.
T Consensus 168 i~~s~~~~~~~~~--~~~~------~~~ki~vi~ngvd~~~~~~~~--------------------~~~~~~~~~~~~-- 217 (405)
T TIGR03449 168 IANTDEEARDLVR--HYDA------DPDRIDVVAPGADLERFRPGD--------------------RATERARLGLPL-- 217 (405)
T ss_pred EECCHHHHHHHHH--HcCC------ChhhEEEECCCcCHHHcCCCc--------------------HHHHHHhcCCCC--
Confidence 9999998888763 2332 236899999999999886642 233566788864
Q ss_pred CCcEEEEEcCCccccCHHHHHHHHhhcccC--C--cEEEEEecC
Q 012874 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKE--N--VQIIVLVSI 440 (454)
Q Consensus 401 ~~~lIlfvGRL~~qKG~d~LieA~~~l~~~--~--v~lvIvG~G 440 (454)
+.++|+|+||+.++||++.|++|++.+.+. + ++|+|+|.+
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~ 261 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGP 261 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCC
Confidence 678999999999999999999999988652 3 899999964
No 14
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.88 E-value=1.1e-20 Score=198.48 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=154.8
Q ss_pred CCCcHhHHHhhhhHHHHHCCC--eEEEEEecCCccc--ccCCcceEEEEEeCCeeeEEEEEEEeeCCceEEEecCcchhh
Q 012874 99 KTGGLGDVLGGLPPALAANGH--RVMTIAPRYDQYK--DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLA 174 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~Gh--eV~Vi~p~y~~~~--~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i~~p~~~~ 174 (454)
..||++.++.+|+++|+++|| +|+|+++.++... ..+.. ......+|++++.++...
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~----------------~~~~~~~gv~v~r~~~~~--- 84 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQ----------------PIERIAPGARIVRLPFGP--- 84 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCC----------------CeeEeCCCcEEEEecCCC---
Confidence 689999999999999999997 9999997654210 11100 011224788888775311
Q ss_pred hhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCC
Q 012874 175 KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKG 254 (454)
Q Consensus 175 k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~ 254 (454)
..+.. ..+-...+..++..+.+.+++.. .+|| |||+|+|++++++.+++..
T Consensus 85 --------~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~----------~~~D-vIH~h~~~~~~~~~~~~~~----- 135 (439)
T TIGR02472 85 --------RRYLR-----KELLWPYLDELADNLLQHLRQQG----------HLPD-LIHAHYADAGYVGARLSRL----- 135 (439)
T ss_pred --------CCCcC-----hhhhhhhHHHHHHHHHHHHHHcC----------CCCC-EEEEcchhHHHHHHHHHHH-----
Confidence 00100 00000112334455566665431 2699 9999999888877666653
Q ss_pred CCCCCeEEEEEeCCcccCCCCccccccCCC-CcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHc
Q 012874 255 MYKSAKVVFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS 333 (454)
Q Consensus 255 ~~~~~pvV~TiH~~~~~g~~~~~~~~~l~l-p~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~ 333 (454)
.++|+|+|+|+...... ..+...+. +..+... + .....+.+++..++.+|+||++|+...++...
T Consensus 136 --~~~p~V~t~H~~~~~~~---~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 201 (439)
T TIGR02472 136 --LGVPLIFTGHSLGREKR---RRLLAAGLKPQQIEKQ------Y---NISRRIEAEEETLAHASLVITSTHQEIEEQYA 201 (439)
T ss_pred --hCCCEEEecccccchhh---hhcccCCCChhhhhhh------c---chHHHHHHHHHHHHhCCEEEECCHHHHHHHHH
Confidence 57899999998532110 00000011 0001000 0 00112345677889999999999865554331
Q ss_pred CCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCcc
Q 012874 334 GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE 413 (454)
Q Consensus 334 ~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~ 413 (454)
...+ ++..++.+||||||.+.|.|.... +.....++.+++ ++.+. +.++|+|+|||.+
T Consensus 202 -~~~~------~~~~ki~vIpnGvd~~~f~~~~~~------------~~~~~~~~~~~~-~~~~~--~~~~i~~vGrl~~ 259 (439)
T TIGR02472 202 -LYDS------YQPERMQVIPPGVDLSRFYPPQSS------------EETSEIDNLLAP-FLKDP--EKPPILAISRPDR 259 (439)
T ss_pred -hccC------CCccceEEECCCcChhhcCCCCcc------------ccchhHHHHHHh-hcccc--CCcEEEEEcCCcc
Confidence 0112 234789999999999999875311 011123333333 44433 5789999999999
Q ss_pred ccCHHHHHHHHhhcc--cCCcEE-EEEecCCc
Q 012874 414 QKGSDILAAAIPHFI--KENVQI-IVLVSITI 442 (454)
Q Consensus 414 qKG~d~LieA~~~l~--~~~v~l-vIvG~G~~ 442 (454)
+||++.|++|++.+. +.+.++ +|+|+|+.
T Consensus 260 ~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~ 291 (439)
T TIGR02472 260 RKNIPSLVEAYGRSPKLQEMANLVLVLGCRDD 291 (439)
T ss_pred cCCHHHHHHHHHhChhhhhhccEEEEeCCccc
Confidence 999999999998642 223444 36788864
No 15
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.88 E-value=8.5e-21 Score=193.87 Aligned_cols=239 Identities=21% Similarity=0.239 Sum_probs=156.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
|||++|+..|+|. ..||.+.++.+|+++|.++ |+|.|++...+.. ..+|+++
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------~~~~~~~ 52 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------DSEGLTV 52 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--------------------------cCCCeEE
Confidence 8999999999884 4699999999999999997 7888887542210 0134454
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
+.+..+..+. . +.. . +..+...+. ..+ . ..++| |||+|+|.+++++.
T Consensus 53 ~~~~~~~~~~-----------~------~~~-~--~~~~~~~~~-~~~--~---------~~~~d-ivh~~~~~~~~~~~ 99 (388)
T TIGR02149 53 KGYRPWSELK-----------E------ANK-A--LGTFSVDLA-MAN--D---------PVDAD-VVHSHTWYTFLAGH 99 (388)
T ss_pred EEecChhhcc-----------c------hhh-h--hhhhhHHHH-Hhh--C---------CCCCC-eEeecchhhhhHHH
Confidence 4332111000 0 000 0 000111111 111 1 23799 99999988776655
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
.++.. .++|+|+|+|+..+...+.... .+. ++ .....+++..+..+|.|+++|
T Consensus 100 ~~~~~-------~~~p~v~~~h~~~~~~~~~~~~---~~~------------~~-----~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 100 LAKKL-------YDKPLVVTAHSLEPLRPWKEEQ---LGG------------GY-----KLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HHHHh-------cCCCEEEEeecccccccccccc---ccc------------ch-----hHHHHHHHHHHhhCCEEEEcc
Confidence 54442 5899999999875322111000 000 00 001123566788999999999
Q ss_pred HHHHHHHHcCCCC-CccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 325 PHYAQELVSGEDK-GVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 325 ~~~a~~l~~~~~~-g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
+.+++.+.+ .+ +. ...++.+||||+|.+.|.|.. +..+++++|++. +.+
T Consensus 153 ~~~~~~~~~--~~~~~------~~~~i~vi~ng~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~ 202 (388)
T TIGR02149 153 GGMREDILK--YYPDL------DPEKVHVIYNGIDTKEYKPDD--------------------GNVVLDRYGIDR--SRP 202 (388)
T ss_pred HHHHHHHHH--HcCCC------CcceEEEecCCCChhhcCCCc--------------------hHHHHHHhCCCC--Cce
Confidence 998888874 22 21 236799999999999887642 234567788864 678
Q ss_pred EEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCc
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITI 442 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~ 442 (454)
+|+|+||+.++||++.|++|++.+. .+++++|+|+|+.
T Consensus 203 ~i~~~Grl~~~Kg~~~li~a~~~l~-~~~~l~i~g~g~~ 240 (388)
T TIGR02149 203 YILFVGRITRQKGVPHLLDAVHYIP-KDVQVVLCAGAPD 240 (388)
T ss_pred EEEEEcccccccCHHHHHHHHHHHh-hcCcEEEEeCCCC
Confidence 9999999999999999999999874 4789999988754
No 16
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.86 E-value=2.9e-20 Score=208.34 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=174.9
Q ss_pred CCCceEEEEecccCCC---------CCCCcHhHHHhhhhHHHHHCC--CeEEEEEecCCcccccCCcceEEEEEeCCe-e
Q 012874 82 GVGLNILFVGTEVAPW---------SKTGGLGDVLGGLPPALAANG--HRVMTIAPRYDQYKDAWDTDVVIELKVGDK-I 149 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~---------~~~GGlg~~v~~La~aL~~~G--heV~Vi~p~y~~~~~~~d~~~~~~v~~~~~-~ 149 (454)
.++|.|+||+-.-.|- .-+||...||.+|+++|+++| |+|.|++.....-.-.|+...+.+.- +.+ +
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~-~~~~~ 245 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEML-TPRSS 245 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccc-ccccc
Confidence 4579999998775531 348999999999999999998 89999997643211112211111110 000 0
Q ss_pred eEEEEEEEeeCCceEEEecC-c--chhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCC-CC-
Q 012874 150 EKVRFFHCHKRGVDRVFVDH-P--WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYF-SG- 224 (454)
Q Consensus 150 ~~v~~~~~~~~GV~~~~i~~-p--~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~-~~- 224 (454)
+..........|+.++.|+. | .++.| +.++ ..+.-|+..+++.++++..-..+-+ .+
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~K------e~L~------------~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPK------EELW------------PYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCH------HHHH------------HHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 00000001235888887763 2 12322 0111 1123455555555443100000000 00
Q ss_pred CCCCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCC-CcccccccccccCCCCCcc
Q 012874 225 PYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVR 303 (454)
Q Consensus 225 ~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~l-p~~~~~~~~~~~~~~k~~~ 303 (454)
+..|| |||+|+|.++.++..++.. .++|+|+|.|.+.-. ........|. +..-.. +.|. .
T Consensus 308 ~~~pD-vIHaHyw~sG~aa~~L~~~-------lgVP~V~T~HSLgr~---K~~~ll~~g~~~~~~~~-----~~y~---~ 368 (1050)
T TIGR02468 308 PVWPY-VIHGHYADAGDSAALLSGA-------LNVPMVLTGHSLGRD---KLEQLLKQGRMSKEEIN-----STYK---I 368 (1050)
T ss_pred CCCCC-EEEECcchHHHHHHHHHHh-------hCCCEEEECccchhh---hhhhhcccccccccccc-----cccc---h
Confidence 11499 9999999999999888874 699999999986311 0000000010 000000 0000 0
Q ss_pred cchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCC-cc--chhhhc-------------cCCeEEEcCCCcCCCCCCCcc
Q 012874 304 GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKG-VE--LDNIIR-------------KTGIKGIVNGMDVQEWNPLTD 367 (454)
Q Consensus 304 ~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g-~~--l~~~l~-------------~~~i~vIpNGiD~~~f~p~~~ 367 (454)
...+..+..++..||+||++|+...+++.+ .|+ .. +...|+ ..++.|||||||++.|.|...
T Consensus 369 ~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~--lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~ 446 (1050)
T TIGR02468 369 MRRIEAEELSLDASEIVITSTRQEIEEQWG--LYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDG 446 (1050)
T ss_pred HHHHHHHHHHHHhcCEEEEeCHHHHHHHHH--HhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCc
Confidence 134566788999999999999998888653 332 11 001111 138999999999999998531
Q ss_pred cccccccCcc-ccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--C--CcEEEEEecCCc
Q 012874 368 KYIGVKYDAS-TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLVSITI 442 (454)
Q Consensus 368 ~~~~~~~~~~-~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~--~v~lvIvG~G~~ 442 (454)
..-...-... ......+.....+++.+ .+ ++.|+|+|+||+.++||++.||+|+..+.+ . +++ +|+|.|+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~l~r~~-~~--pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd 522 (1050)
T TIGR02468 447 DMDGETEGNEEHPAKPDPPIWSEIMRFF-TN--PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDD 522 (1050)
T ss_pred cccchhcccccccccccchhhHHHHhhc-cc--CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCch
Confidence 1000000000 00000011122333333 33 378999999999999999999999998864 2 454 56787753
No 17
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.86 E-value=2.3e-20 Score=193.11 Aligned_cols=231 Identities=21% Similarity=0.227 Sum_probs=150.1
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|+..+.| ..||.+.++.+|+++|+++||+|+|+++.++..... . ...+|++++
T Consensus 1 kI~~v~~~~~p--~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~------------------~---~~~~~i~v~ 57 (398)
T cd03796 1 RICMVSDFFYP--NLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI------------------R---YLTNGLKVY 57 (398)
T ss_pred CeeEEeecccc--ccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc------------------c---cccCceeEE
Confidence 79999998989 479999999999999999999999999875421110 0 012466666
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHH--H
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI--P 243 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~--~ 243 (454)
.+....+... ..+. ++..+...+...+++ .+|| |||+|++...+. .
T Consensus 58 ~~p~~~~~~~------~~~~-------------~~~~~~~~l~~~~~~------------~~~D-iIh~~~~~~~~~~~~ 105 (398)
T cd03796 58 YLPFVVFYNQ------STLP-------------TFFGTFPLLRNILIR------------ERIT-IVHGHQAFSALAHEA 105 (398)
T ss_pred EecceeccCC------cccc-------------chhhhHHHHHHHHHh------------cCCC-EEEECCCCchHHHHH
Confidence 5532211100 0010 000111222223322 3799 999998765433 2
Q ss_pred HHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceecc
Q 012874 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (454)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitV 323 (454)
.++.. ..++|+|+|.|+... .. +. . .. ....+++..++.+|.++++
T Consensus 106 ~~~~~-------~~~~~~v~t~h~~~~--~~---~~-----~-~~----------------~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 106 LLHAR-------TMGLKTVFTDHSLFG--FA---DA-----S-SI----------------HTNKLLRFSLADVDHVICV 151 (398)
T ss_pred HHHhh-------hcCCcEEEEeccccc--cc---ch-----h-hH----------------HhhHHHHHhhccCCEEEEe
Confidence 22222 257999999998531 00 00 0 00 0012345567889999999
Q ss_pred CHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 324 S~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
|+...+.+.. ..+. ...++.+||||+|.+.|.|..++ . +++.+
T Consensus 152 s~~~~~~~~~--~~~~------~~~k~~vi~ngvd~~~f~~~~~~---------------------------~--~~~~~ 194 (398)
T cd03796 152 SHTSKENTVL--RASL------DPERVSVIPNAVDSSDFTPDPSK---------------------------R--DNDKI 194 (398)
T ss_pred cHhHhhHHHH--HhCC------ChhhEEEEcCccCHHHcCCCccc---------------------------C--CCCce
Confidence 9987776532 1221 24689999999999988765310 1 12568
Q ss_pred EEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCc
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~ 442 (454)
+|+|+||+.++||++.|++|++.+.+ .+++|+|+|+|+.
T Consensus 195 ~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 235 (398)
T cd03796 195 TIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK 235 (398)
T ss_pred EEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch
Confidence 99999999999999999999998865 3899999999974
No 18
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.84 E-value=1.5e-19 Score=191.18 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=152.0
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCC
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~G 161 (454)
.++|||++++.. .|+...||.+.++.+|+++|.++||+|+|+++..+. ... ..|
T Consensus 56 ~~~mrI~~~~~~-~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~~------------------------~~g 109 (465)
T PLN02871 56 SRPRRIALFVEP-SPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQE------------------------FHG 109 (465)
T ss_pred CCCceEEEEECC-cCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccc------------------------ccC
Confidence 468999999753 344568999999999999999999999999976431 111 123
Q ss_pred ceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhH
Q 012874 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (454)
Q Consensus 162 V~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~ 241 (454)
+.++.+.... . ..|.. + ...+. +...+.+.+++ .+|| |||+|+.....
T Consensus 110 ~~v~~~~~~~-~---------~~~~~-----~---~~~~~-~~~~l~~~i~~------------~kpD-iIh~~~~~~~~ 157 (465)
T PLN02871 110 AKVIGSWSFP-C---------PFYQK-----V---PLSLA-LSPRIISEVAR------------FKPD-LIHASSPGIMV 157 (465)
T ss_pred ceeeccCCcC-C---------ccCCC-----c---eeecc-CCHHHHHHHHh------------CCCC-EEEECCCchhH
Confidence 3322111000 0 01100 0 00000 01122333443 3799 99999854322
Q ss_pred -HHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 242 -IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 242 -~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
.+.++... .++|+|+|+|+....- .+ ..+.. .+. ...+.+++...+.+|.|
T Consensus 158 ~~~~~~ak~-------~~ip~V~~~h~~~~~~-~~-----~~~~~-~~~--------------~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 158 FGALFYAKL-------LCVPLVMSYHTHVPVY-IP-----RYTFS-WLV--------------KPMWDIIRFLHRAADLT 209 (465)
T ss_pred HHHHHHHHH-------hCCCEEEEEecCchhh-hh-----cccch-hhH--------------HHHHHHHHHHHhhCCEE
Confidence 23333332 5899999999753210 00 00000 000 01123356667889999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~ 400 (454)
+++|+...+.+.+ .+. ....++.+||||+|.+.|.|..+ + +.++.++... .+
T Consensus 210 i~~S~~~~~~l~~---~~~-----~~~~kv~vi~nGvd~~~f~p~~~---------------~----~~~~~~~~~~-~~ 261 (465)
T PLN02871 210 LVTSPALGKELEA---AGV-----TAANRIRVWNKGVDSESFHPRFR---------------S----EEMRARLSGG-EP 261 (465)
T ss_pred EECCHHHHHHHHH---cCC-----CCcCeEEEeCCccCccccCCccc---------------c----HHHHHHhcCC-CC
Confidence 9999999988874 221 12368999999999999987531 1 1233344222 12
Q ss_pred CCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 401 ~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
+.++|+|+|||.++||++.|+++++++. +++|+|+|+|+.+
T Consensus 262 ~~~~i~~vGrl~~~K~~~~li~a~~~~~--~~~l~ivG~G~~~ 302 (465)
T PLN02871 262 EKPLIVYVGRLGAEKNLDFLKRVMERLP--GARLAFVGDGPYR 302 (465)
T ss_pred CCeEEEEeCCCchhhhHHHHHHHHHhCC--CcEEEEEeCChHH
Confidence 5789999999999999999999998873 7999999999753
No 19
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.84 E-value=4e-19 Score=195.43 Aligned_cols=293 Identities=15% Similarity=0.100 Sum_probs=167.5
Q ss_pred CceEEEEecccC----CC---CCCCcHhHHHhhhhHHH--------HHCCC----eEEEEEecCCcccccCCc-ceEEEE
Q 012874 84 GLNILFVGTEVA----PW---SKTGGLGDVLGGLPPAL--------AANGH----RVMTIAPRYDQYKDAWDT-DVVIEL 143 (454)
Q Consensus 84 ~MkIl~vs~e~~----P~---~~~GGlg~~v~~La~aL--------~~~Gh----eV~Vi~p~y~~~~~~~d~-~~~~~v 143 (454)
.|||++|+.+.+ |- .-+||...||.+|+++| +++|| +|.|++...+... +.+ ...++
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~--~~~~~~~~e- 331 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAE--GTTCNQRLE- 331 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcc--ccccccccc-
Confidence 499999999972 21 13799999999999985 68999 7779987643211 100 00000
Q ss_pred EeCCeeeEEEEEEEeeCCceEEEecCc--------chhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhc
Q 012874 144 KVGDKIEKVRFFHCHKRGVDRVFVDHP--------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILN 215 (454)
Q Consensus 144 ~~~~~~~~v~~~~~~~~GV~~~~i~~p--------~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~ 215 (454)
.+ ...+|+.++.++.. .|.+| ..++. ....|+..+.+.++...
T Consensus 332 -------~~----~~~~~~~I~rvp~g~~~~~~~~~~i~k------~~l~p------------~l~~f~~~~~~~~~~~~ 382 (784)
T TIGR02470 332 -------KV----YGTEHAWILRVPFRTENGIILRNWISR------FEIWP------------YLETFAEDAEKEILAEL 382 (784)
T ss_pred -------cc----cCCCceEEEEecCCCCcccccccccCH------HHHHH------------HHHHHHHHHHHHHHHhc
Confidence 00 01245555554421 11111 01110 12234555555443221
Q ss_pred ccCCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccc
Q 012874 216 LNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI 295 (454)
Q Consensus 216 ~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~ 295 (454)
..+|| |||+|.|.+++++..++.. .++|.|+|.|.+...... . .++...-..
T Consensus 383 ---------~~~pD-lIHahy~d~glva~lla~~-------lgVP~v~t~HsL~~~K~~-~-----~g~~~~~~e----- 434 (784)
T TIGR02470 383 ---------QGKPD-LIIGNYSDGNLVASLLARK-------LGVTQCTIAHALEKTKYP-D-----SDIYWQEFE----- 434 (784)
T ss_pred ---------CCCCC-EEEECCCchHHHHHHHHHh-------cCCCEEEECCcchhhccc-c-----cccccccch-----
Confidence 12799 9999999999999777764 699999999987432111 0 011000000
Q ss_pred cCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcC-CCCC------c-cchhh-----hccCCeEEEcCCCcCCCC
Q 012874 296 DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG-EDKG------V-ELDNI-----IRKTGIKGIVNGMDVQEW 362 (454)
Q Consensus 296 ~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~-~~~g------~-~l~~~-----l~~~~i~vIpNGiD~~~f 362 (454)
+.+. ....+.-...++..||+|||.|.......... ..|+ . ++-.+ ....++.+||+|+|.+.|
T Consensus 435 ~~~~---~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF 511 (784)
T TIGR02470 435 DKYH---FSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIY 511 (784)
T ss_pred hHHH---hhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhc
Confidence 0000 00012224467888999999997543321100 0111 0 01001 123689999999999999
Q ss_pred CCCcccccc-cccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEec
Q 012874 363 NPLTDKYIG-VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVS 439 (454)
Q Consensus 363 ~p~~~~~~~-~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~ 439 (454)
.|...+.-. .... ..+ +..--.+++.++.+|+..+++.|+|+++|||.++||++.|++|+.++.. .+++|+|+|+
T Consensus 512 ~P~~~~~~r~~~~~-~~i-e~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGG 589 (784)
T TIGR02470 512 FPYSDKEKRLTNLH-PEI-EELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAG 589 (784)
T ss_pred CCCCchhhhhhhhh-cch-hhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeC
Confidence 886431000 0000 000 0000123445677898666789999999999999999999999987633 4799999998
Q ss_pred CC
Q 012874 440 IT 441 (454)
Q Consensus 440 G~ 441 (454)
|.
T Consensus 590 g~ 591 (784)
T TIGR02470 590 KL 591 (784)
T ss_pred Cc
Confidence 74
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.84 E-value=3.6e-19 Score=180.15 Aligned_cols=238 Identities=23% Similarity=0.198 Sum_probs=151.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
|||++++. | ..||.+.++.+|+++|+++||+|+|++...+...... ..++..
T Consensus 1 mki~~~~~---p--~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~-----------------------~~~~~~ 52 (371)
T cd04962 1 MKIGIVCY---P--TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY-----------------------SPNIFF 52 (371)
T ss_pred CceeEEEE---e--CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh-----------------------ccCeEE
Confidence 89999973 4 3699999999999999999999999986533111100 012222
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
+.++.+.+ . ... +... .......+.+++++ .+|| |||+|.+....++.
T Consensus 53 ~~~~~~~~-~---------~~~------~~~~---~~~~~~~l~~~i~~------------~~~d-ivh~~~~~~~~~~~ 100 (371)
T cd04962 53 HEVEVPQY-P---------LFQ------YPPY---DLALASKIAEVAKR------------YKLD-LLHVHYAVPHAVAA 100 (371)
T ss_pred EEeccccc-c---------hhh------cchh---HHHHHHHHHHHHhc------------CCcc-EEeecccCCccHHH
Confidence 11111110 0 000 0000 01122344444443 3899 99999765443333
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
++...... ..++|+|+|+|+....- .+.. . ....+.+..++.+|+|+++|
T Consensus 101 ~~~~~~~~---~~~~~~i~~~h~~~~~~---------~~~~-~-----------------~~~~~~~~~~~~~d~ii~~s 150 (371)
T cd04962 101 YLAREILG---KKDLPVVTTLHGTDITL---------VGQD-P-----------------SFQPATRFSIEKSDGVTAVS 150 (371)
T ss_pred HHHHHhcC---cCCCcEEEEEcCCcccc---------cccc-c-----------------cchHHHHHHHhhCCEEEEcC
Confidence 33322110 13799999999763210 0000 0 01234566788999999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+...+.+.+ .++ ...++.+||||+|...|.+.. +...+++++++. +.++
T Consensus 151 ~~~~~~~~~--~~~-------~~~~i~vi~n~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~ 199 (371)
T cd04962 151 ESLRQETYE--LFD-------ITKEIEVIPNFVDEDRFRPKP--------------------DEALKRRLGAPE--GEKV 199 (371)
T ss_pred HHHHHHHHH--hcC-------CcCCEEEecCCcCHhhcCCCc--------------------hHHHHHhcCCCC--CCeE
Confidence 998888764 221 136799999999988776542 122456677764 6788
Q ss_pred EEEEcCCccccCHHHHHHHHhhcccC-CcEEEEEecCCcc
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLVSITIR 443 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~~-~v~lvIvG~G~~~ 443 (454)
++|+||+.++||++.|++|+..+.+. +++++|+|+|+..
T Consensus 200 il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~ 239 (371)
T cd04962 200 LIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPER 239 (371)
T ss_pred EEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCH
Confidence 99999999999999999999988664 7999999999753
No 21
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.80 E-value=7.8e-18 Score=168.90 Aligned_cols=219 Identities=21% Similarity=0.232 Sum_probs=147.1
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEEEecCcchhhhhhc
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWG 178 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i~~p~~~~k~w~ 178 (454)
..||++.++.+|+++|+++||+|.++++..... ... ...|++++.+.... .
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~----------------------~~~~~~~~~~~~~~--~---- 58 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLV-AEL----------------------EAEGSRHIKLPFIS--K---- 58 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchH-HHH----------------------HhcCCeEEEccccc--c----
Confidence 459999999999999999999999998753211 100 01345444332100 0
Q ss_pred CCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCCCCCC
Q 012874 179 KTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKS 258 (454)
Q Consensus 179 ~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~ 258 (454)
..+ ........+...+++ .+|| |||+|++..++.+.++... .+
T Consensus 59 ----~~~-------------~~~~~~~~l~~~~~~------------~~~d-ii~~~~~~~~~~~~~~~~~-------~~ 101 (355)
T cd03819 59 ----NPL-------------RILLNVARLRRLIRE------------EKVD-IVHARSRAPAWSAYLAARR-------TR 101 (355)
T ss_pred ----chh-------------hhHHHHHHHHHHHHH------------cCCC-EEEECCCchhHHHHHHHHh-------cC
Confidence 000 011111223333332 3899 9999987766555444432 58
Q ss_pred CeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCC
Q 012874 259 AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKG 338 (454)
Q Consensus 259 ~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g 338 (454)
+|+|+++|+..... .+.+..+..+|.++++|+...+.+.+ .++
T Consensus 102 ~~~i~~~h~~~~~~-----------------------------------~~~~~~~~~~~~vi~~s~~~~~~~~~--~~~ 144 (355)
T cd03819 102 PPFVTTVHGFYSVN-----------------------------------FRYNAIMARGDRVIAVSNFIADHIRE--NYG 144 (355)
T ss_pred CCEEEEeCCchhhH-----------------------------------HHHHHHHHhcCEEEEeCHHHHHHHHH--hcC
Confidence 99999999853110 02233456799999999998888873 344
Q ss_pred ccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHH
Q 012874 339 VELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSD 418 (454)
Q Consensus 339 ~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d 418 (454)
. .+.++.+||||+|...|.+... .......++++++++. +.++|+|+||+.++||++
T Consensus 145 ~------~~~k~~~i~ngi~~~~~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~i~~~Gr~~~~Kg~~ 201 (355)
T cd03819 145 V------DPDRIRVIPRGVDLDRFDPGAV---------------PPERILALAREWPLPK--GKPVILLPGRLTRWKGQE 201 (355)
T ss_pred C------ChhhEEEecCCccccccCcccc---------------chHHHHHHHHHcCCCC--CceEEEEeeccccccCHH
Confidence 2 2368999999999998876431 1112233667777664 678999999999999999
Q ss_pred HHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 419 ILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 419 ~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
.|++|+..+.+ .+++++|+|.|+..
T Consensus 202 ~li~~~~~l~~~~~~~~l~ivG~~~~~ 228 (355)
T cd03819 202 VFIEALARLKKDDPDVHLLIVGDAQGR 228 (355)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCccc
Confidence 99999999877 48999999998653
No 22
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.80 E-value=1.1e-18 Score=183.18 Aligned_cols=263 Identities=17% Similarity=0.055 Sum_probs=142.4
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCC-CeEEEEEecCCcccccCCcceEEEEEeCCeeeE-EEEEEEeeC
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEK-VRFFHCHKR 160 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~G-heV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~-v~~~~~~~~ 160 (454)
++|||+++|..|.|| .+|+...+..++.+|+++| |+|+||+|.++...........+.+..+.+.+. ++ ...
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~----~~~ 76 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVR----QWL 76 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhh----hhc
Confidence 469999999999996 6999999999999999999 899999999863211000000000000000000 00 001
Q ss_pred CceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCc-h
Q 012874 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-T 239 (454)
Q Consensus 161 GV~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~-t 239 (454)
+-.++++....+ ..|....+.+ .++.+....+.+.++. ++|| |||+|+.. .
T Consensus 77 ~~~v~r~~s~~~----------p~yp~r~~~~-----~r~~~~~~~i~~~l~~------------~~pD-VIHv~tP~~L 128 (462)
T PLN02846 77 EERISFLPKFSI----------KFYPGKFSTD-----KRSILPVGDISETIPD------------EEAD-IAVLEEPEHL 128 (462)
T ss_pred cCeEEEeccccc----------ccCccccccc-----ccccCChHHHHHHHHh------------cCCC-EEEEcCchhh
Confidence 112223221100 0111000000 0111122344455543 4899 99999843 3
Q ss_pred hHH--HHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhC
Q 012874 240 SLI--PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILES 317 (454)
Q Consensus 240 a~~--~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~a 317 (454)
+.+ +..+.. +-.++|.|+|+.. ....+. ...+....+. .....+|++.. .+
T Consensus 129 G~~~~g~~~~~--------k~~~vV~tyHT~y-~~Y~~~---~~~g~~~~~l-------------~~~~~~~~~r~--~~ 181 (462)
T PLN02846 129 TWYHHGKRWKT--------KFRLVIGIVHTNY-LEYVKR---EKNGRVKAFL-------------LKYINSWVVDI--YC 181 (462)
T ss_pred hhHHHHHHHHh--------cCCcEEEEECCCh-HHHHHH---hccchHHHHH-------------HHHHHHHHHHH--hc
Confidence 443 222221 1234888999842 111000 0000000000 00012233222 48
Q ss_pred CceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCC
Q 012874 318 DMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 397 (454)
Q Consensus 318 d~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~ 397 (454)
|.|+++|... +++.+ .+...+||||.+.|.|... . +++..+ +
T Consensus 182 d~vi~pS~~~-~~l~~---------------~~i~~v~GVd~~~f~~~~~--------------------~-~~~~~~-~ 223 (462)
T PLN02846 182 HKVIRLSAAT-QDYPR---------------SIICNVHGVNPKFLEIGKL--------------------K-LEQQKN-G 223 (462)
T ss_pred CEEEccCHHH-HHHhh---------------CEEecCceechhhcCCCcc--------------------c-HhhhcC-C
Confidence 9999999754 44542 1334568999998887531 0 112222 2
Q ss_pred CCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCccc
Q 012874 398 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIRN 444 (454)
Q Consensus 398 ~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~~ 444 (454)
.+.-.++++|+|||.++||++.|++|++++.+ .+++|+|+|+|+.+.
T Consensus 224 ~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~ 272 (462)
T PLN02846 224 EQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSD 272 (462)
T ss_pred CCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHH
Confidence 21113579999999999999999999998865 379999999998754
No 23
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.79 E-value=2.4e-17 Score=165.66 Aligned_cols=232 Identities=19% Similarity=0.142 Sum_probs=143.5
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|+.+++| ...||++.++.+|+++|+++||+|+|+++........ ....|++++
T Consensus 1 ~i~~i~~~~~~-~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~----------------------~~~~~i~~~ 57 (363)
T cd04955 1 KIAIIGTRGIP-AKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE----------------------TEYNGVRLI 57 (363)
T ss_pred CeEEEecCcCC-cccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc----------------------cccCCceEE
Confidence 68999887665 2579999999999999999999999999764321100 113577776
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.++.+.. . .. ..+.+....+...++ . ..++| ++|.....+..+...
T Consensus 58 ~~~~~~~-~---------~~------------~~~~~~~~~~~~~~~--~---------~~~~~-~i~~~~~~~~~~~~~ 103 (363)
T cd04955 58 HIPAPEI-G---------GL------------GTIIYDILAILHALF--V---------KRDID-HVHALGPAIAPFLPL 103 (363)
T ss_pred EcCCCCc-c---------ch------------hhhHHHHHHHHHHHh--c---------cCCeE-EEEecCccHHHHHHH
Confidence 6543210 0 00 000000111122221 1 12556 555554443222222
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
++. .++|+|+++|+..+.... .+.+ . . .-...+++.+++.+|.|+++|+
T Consensus 104 ~~~--------~~~~~v~~~h~~~~~~~~-------~~~~--~-~-------------~~~~~~~~~~~~~ad~ii~~s~ 152 (363)
T cd04955 104 LRL--------KGKKVVVNMDGLEWKRAK-------WGRP--A-K-------------RYLKFGEKLAVKFADRLIADSP 152 (363)
T ss_pred HHh--------cCCCEEEEccCcceeecc-------cccc--h-h-------------HHHHHHHHHHHhhccEEEeCCH
Confidence 221 478999999987532110 0000 0 0 0012234567789999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
..++.+.. .+|. . ..+||||+|...+.+. ...+++++++ +.+.|
T Consensus 153 ~~~~~~~~--~~~~--------~-~~~i~ngv~~~~~~~~----------------------~~~~~~~~~~---~~~~i 196 (363)
T cd04955 153 GIKEYLKE--KYGR--------D-STYIPYGADHVVSSEE----------------------DEILKKYGLE---PGRYY 196 (363)
T ss_pred HHHHHHHH--hcCC--------C-CeeeCCCcChhhcchh----------------------hhhHHhcCCC---CCcEE
Confidence 98888853 3442 2 2899999998876431 1123445555 34568
Q ss_pred EEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITI 442 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~ 442 (454)
+|+||+.++||++.|++|+.++.. +++|+|+|+|+.
T Consensus 197 ~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~ 232 (363)
T cd04955 197 LLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADH 232 (363)
T ss_pred EEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCC
Confidence 899999999999999999998864 899999999853
No 24
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.79 E-value=1.6e-17 Score=169.33 Aligned_cols=243 Identities=23% Similarity=0.239 Sum_probs=152.3
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEEEecCcchhhhhhc
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWG 178 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i~~p~~~~k~w~ 178 (454)
..||++.++.+|+++|+++||+|+|+++......... ....+|+.++.+......
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~----- 73 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI--------------------VELAPGVRVVRVPAGPAE----- 73 (398)
T ss_pred CCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc--------------------cccccceEEEeccccccc-----
Confidence 4689999999999999999999999997643211100 001245565555321100
Q ss_pred CCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCCCCCC
Q 012874 179 KTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKS 258 (454)
Q Consensus 179 ~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~ 258 (454)
.+.. ..+. .....++..+...++... .+|| |||+|.+.++.++..++.. .+
T Consensus 74 -----~~~~---~~~~---~~~~~~~~~~~~~~~~~~----------~~~D-iv~~~~~~~~~~~~~~~~~-------~~ 124 (398)
T cd03800 74 -----YLPK---EELW---PYLDEFADDLLRFLRREG----------GRPD-LIHAHYWDSGLVALLLARR-------LG 124 (398)
T ss_pred -----CCCh---hhcc---hhHHHHHHHHHHHHHhcC----------CCcc-EEEEecCccchHHHHHHhh-------cC
Confidence 0000 0000 011123344444444321 1799 9999998887776666553 58
Q ss_pred CeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCC
Q 012874 259 AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKG 338 (454)
Q Consensus 259 ~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g 338 (454)
+|+|++.|+........ ......+. .......++..++.+|.++++|+...+.+.+ .++
T Consensus 125 ~~~i~~~h~~~~~~~~~------~~~~~~~~-------------~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~--~~~ 183 (398)
T cd03800 125 IPLVHTFHSLGAVKRRH------LGAADTYE-------------PARRIEAEERLLRAADRVIASTPQEAEELYS--LYG 183 (398)
T ss_pred CceEEEeecccccCCcc------cccccccc-------------hhhhhhHHHHHHhhCCEEEEcCHHHHHHHHH--Hcc
Confidence 99999999864211100 00000000 0011234566788999999999998888764 221
Q ss_pred ccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHH
Q 012874 339 VELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSD 418 (454)
Q Consensus 339 ~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d 418 (454)
....++.+||||+|.+.|.+..+. ...+++++.+. +.++|+|+||+.++||++
T Consensus 184 ------~~~~~~~vi~ng~~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~i~~~gr~~~~k~~~ 236 (398)
T cd03800 184 ------AYPRRIRVVPPGVDLERFTPYGRA-------------------EARRARLLRDP--DKPRILAVGRLDPRKGID 236 (398)
T ss_pred ------ccccccEEECCCCCccceecccch-------------------hhHHHhhccCC--CCcEEEEEcccccccCHH
Confidence 123569999999999988765311 01133445543 578999999999999999
Q ss_pred HHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 419 ILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 419 ~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
.+++|+..+.+ .+++|+|+|+|...
T Consensus 237 ~ll~a~~~l~~~~~~~~l~i~G~~~~~ 263 (398)
T cd03800 237 TLIRAYAELPELRERANLVIVGGPRDD 263 (398)
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCCc
Confidence 99999999875 37999999998653
No 25
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.79 E-value=9.3e-18 Score=174.83 Aligned_cols=260 Identities=15% Similarity=0.148 Sum_probs=145.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
||||+|.... ..||+|.++.+|++.|.++||+|.++.-+........ . .++++.
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~------~----------------~~~~~~ 54 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV------S----------------HQNYPQ 54 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc------c----------------cCCcce
Confidence 8999998854 6799999999999999999999999987643211100 0 001111
Q ss_pred -EEec------CcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCC
Q 012874 165 -VFVD------HPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW 237 (454)
Q Consensus 165 -~~i~------~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w 237 (454)
+.+. ....+.|++++. .++ + -.+..+++++ .++|| |||+|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~--~~~~~~~i~~-----------~~~pD-viHlH~~ 103 (405)
T PRK10125 55 VIKHTPRMTAMANIALFRLFNRD---LFG--------------N--FNELYRTITR-----------TPGPV-VLHFHVL 103 (405)
T ss_pred EEEecccHHHHHHHHHHHhcchh---hcc--------------h--HHHHHHHHhh-----------ccCCC-EEEEecc
Confidence 1110 011222222211 111 0 1222333322 25899 9999987
Q ss_pred chhHHHHH--HHHhccCCCCCCCCeEEEEEeCCc-ccCCCCcccc---ccCCCCcccccccccccCCCC-Cc------cc
Q 012874 238 HTSLIPCY--LKTMYKPKGMYKSAKVVFCIHNIA-YQGRFAFEDF---GLLNLPAQFKSSFDFIDGYNK-PV------RG 304 (454)
Q Consensus 238 ~ta~~~~~--l~~~~~~~~~~~~~pvV~TiH~~~-~~g~~~~~~~---~~l~lp~~~~~~~~~~~~~~k-~~------~~ 304 (454)
|.+++... +.....-.-...++|+|+|+||.+ +.|+|.+..- +..+... | ....+|.+ .. +.
T Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~----C-p~l~~~~~~~~d~~~~~~~ 178 (405)
T PRK10125 104 HSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQK----C-PTLNNYPPVKVDRAHQLVA 178 (405)
T ss_pred cCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCC----C-CCccCCCCCccchHHHHHH
Confidence 76543322 110000000025789999999994 5677765221 0111100 0 00000100 00 00
Q ss_pred chHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchH
Q 012874 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (454)
Q Consensus 305 ~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~ 384 (454)
.+....+...+.++.+|++|+.+++++.+ .++ ..++.+||||||++.+.+..+ .
T Consensus 179 ~k~~~~~~~~~~~~~iV~~S~~l~~~~~~--~~~--------~~~i~vI~NGid~~~~~~~~~---------------~- 232 (405)
T PRK10125 179 GKRQLFREMLALGCQFISPSQHVADAFNS--LYG--------PGRCRIINNGIDMATEAILAE---------------L- 232 (405)
T ss_pred HHHHHHHHHhhcCcEEEEcCHHHHHHHHH--HcC--------CCCEEEeCCCcCccccccccc---------------c-
Confidence 11112222334568999999999988763 222 368999999999864432210 0
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEcCC--ccccCHHHHHHHHhhcccCCcEEEEEecCCc
Q 012874 385 LLKEALQAEVGLPVDRNIPVIGFIGRL--EEQKGSDILAAAIPHFIKENVQIIVLVSITI 442 (454)
Q Consensus 385 ~~k~~lr~~~Gl~~~~~~~lIlfvGRL--~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~ 442 (454)
...+ .+ ++.++|+|+||+ .+.||++.|++|+..+. .+++|+|+|+|++
T Consensus 233 ---~~~~----~~--~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~ 282 (405)
T PRK10125 233 ---PPVR----ET--QGKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSP 282 (405)
T ss_pred ---cccc----cC--CCCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCc
Confidence 0000 11 256789999994 36899999999999874 5799999999864
No 26
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.79 E-value=2.1e-17 Score=165.66 Aligned_cols=229 Identities=20% Similarity=0.242 Sum_probs=151.7
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||+++++.+ ..||.+.++.+|+++|.++||+|++++........... .+....
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-----------------------~~~~~~ 53 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPI-----------------------DATIIL 53 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchh-----------------------hccceE
Confidence 588887764 46999999999999999999999999865322111000 000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.+... + .. ..+......+.++++. ++|| |||+|.+++.+++.+
T Consensus 54 ~~~~~----~-------~~-------------~~~~~~~~~~~~~~~~------------~~pd-iv~~~~~~~~~~~~l 96 (360)
T cd04951 54 NLNMS----K-------NP-------------LSFLLALWKLRKILRQ------------FKPD-VVHAHMFHANIFARL 96 (360)
T ss_pred Eeccc----c-------cc-------------hhhHHHHHHHHHHHHh------------cCCC-EEEEcccchHHHHHH
Confidence 11100 0 00 0011111223344443 4899 999999887766665
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
++.. ...+|++.|.|+....+. . ...+.+.....++.++++|+
T Consensus 97 ~~~~------~~~~~~v~~~h~~~~~~~--------------~-----------------~~~~~~~~~~~~~~~~~~s~ 139 (360)
T cd04951 97 LRLF------LPSPPLICTAHSKNEGGR--------------L-----------------RMLAYRLTDFLSDLTTNVSK 139 (360)
T ss_pred HHhh------CCCCcEEEEeeccCchhH--------------H-----------------HHHHHHHHhhccCceEEEcH
Confidence 5553 257899999998642210 0 01112333456789999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
...+.+.+ ..+ ++..++.+||||+|.+.|.+.. ..+..++++++++. +.+++
T Consensus 140 ~~~~~~~~--~~~------~~~~~~~~i~ng~~~~~~~~~~------------------~~~~~~~~~~~~~~--~~~~~ 191 (360)
T cd04951 140 EALDYFIA--SKA------FNANKSFVVYNGIDTDRFRKDP------------------ARRLKIRNALGVKN--DTFVI 191 (360)
T ss_pred HHHHHHHh--ccC------CCcccEEEEccccchhhcCcch------------------HHHHHHHHHcCcCC--CCEEE
Confidence 88888764 111 2346899999999998886542 12345677788764 67899
Q ss_pred EEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
+|+||+.++||++.+++|+.++.+. +++|+|+|+|+.+
T Consensus 192 l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~ 231 (360)
T cd04951 192 LAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLR 231 (360)
T ss_pred EEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcH
Confidence 9999999999999999999988763 7999999999854
No 27
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.78 E-value=1.1e-17 Score=172.60 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=150.2
Q ss_pred eEEEEecccCCC--CCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCce
Q 012874 86 NILFVGTEVAPW--SKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (454)
Q Consensus 86 kIl~vs~e~~P~--~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~ 163 (454)
||+|++++-.|- ...||++.++.++++.|++ +|++++-..+.+++. + ...+|+.
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~---------------~------~~~~~~~ 59 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEY---------------T------KVNDNCD 59 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCch---------------h------hccCCCc
Confidence 899999986642 3589999999999999954 999999887654432 0 0135677
Q ss_pred EEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHH
Q 012874 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (454)
Q Consensus 164 ~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~ 243 (454)
++.+..+....+..+ +++.. ....+++.+...+.... ..++| |||+|+... +..
T Consensus 60 ~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~---------~~~~~-vi~v~~~~~-~~~ 113 (380)
T PRK15484 60 IHYIGFSRIYKRLFQ----KWTRL-----------DPLPYSQRILNIAHKFT---------ITKDS-VIVIHNSMK-LYR 113 (380)
T ss_pred eEEEEeccccchhhh----hhhcc-----------CchhHHHHHHHHHHhcC---------CCCCc-EEEEeCcHH-hHH
Confidence 777744332211000 01110 00112333444333321 12588 999997442 222
Q ss_pred HHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceecc
Q 012874 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (454)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitV 323 (454)
.+ +.. ..++|+|+|+|+... . ..+..++++|++
T Consensus 114 ~~-~~~------~~~~~~v~~~h~~~~-----~-----------------------------------~~~~~~~~ii~~ 146 (380)
T PRK15484 114 QI-RER------APQAKLVMHMHNAFE-----P-----------------------------------ELLDKNAKIIVP 146 (380)
T ss_pred HH-Hhh------CCCCCEEEEEecccC-----h-----------------------------------hHhccCCEEEEc
Confidence 22 221 257899999997420 0 012357899999
Q ss_pred CHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 324 S~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
|+..++.+.+ .+ ...++.+||||+|.+.|.|.. ++.+++++|++. +.+
T Consensus 147 S~~~~~~~~~--~~--------~~~~i~vIpngvd~~~~~~~~--------------------~~~~~~~~~~~~--~~~ 194 (380)
T PRK15484 147 SQFLKKFYEE--RL--------PNADISIVPNGFCLETYQSNP--------------------QPNLRQQLNISP--DET 194 (380)
T ss_pred CHHHHHHHHh--hC--------CCCCEEEecCCCCHHHcCCcc--------------------hHHHHHHhCCCC--CCe
Confidence 9998887763 11 235799999999998886642 233566788764 568
Q ss_pred EEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCc
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~ 442 (454)
+|+|+||+.++||++.|++|++++.+ .+++|+|+|+|+.
T Consensus 195 ~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~ 235 (380)
T PRK15484 195 VLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTA 235 (380)
T ss_pred EEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 89999999999999999999999865 3799999999864
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.78 E-value=7.6e-18 Score=172.34 Aligned_cols=251 Identities=16% Similarity=0.149 Sum_probs=143.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeC-Cce
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKR-GVD 163 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~-GV~ 163 (454)
|||+++...+ ..||++.++.+|+++|+++||+|+|+++..+... ..+ ...+ ++.
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~-~~~--------------------~~~~~~~~ 55 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSH-CFE--------------------ETKDGTLP 55 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchh-cch--------------------hccCCeeE
Confidence 8999997654 4699999999999999999999999997543211 000 0011 133
Q ss_pred EEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHH
Q 012874 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (454)
Q Consensus 164 ~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~ 243 (454)
+..+..+ ..+ ..++ .......+..+....... .... ..++| |||+|++..+. +
T Consensus 56 i~~~~~~--~~~-------~~~~------~~~~~~~~~~~~~~~~~~-~~~~---------~~~~D-vi~~~~~~~~~-~ 108 (392)
T cd03805 56 VRVRGDW--LPR-------SIFG------RFHILCAYLRMLYLALYL-LLLP---------DEKYD-VFIVDQVSACV-P 108 (392)
T ss_pred EEEEeEE--Ecc-------hhhH------hHHHHHHHHHHHHHHHHH-Hhcc---------cCCCC-EEEEcCcchHH-H
Confidence 3222110 000 0000 000000000000000000 0111 13799 89999866433 2
Q ss_pred HHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceecc
Q 012874 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (454)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitV 323 (454)
+++.. .+.|+|+++|..... +.. ..+....+.. .....+++..++.+|.|+++
T Consensus 109 -~~~~~-------~~~~~i~~~h~~~~~--~~~----~~~~~~~~~~-------------~~~~~~e~~~~~~ad~ii~~ 161 (392)
T cd03805 109 -LLKLF-------SPSKILFYCHFPDQL--LAQ----RGSLLKRLYR-------------KPFDWLEEFTTGMADKIVVN 161 (392)
T ss_pred -HHHHh-------cCCcEEEEEecChHH--hcC----CCcHHHHHHH-------------HHHHHHHHHHhhCceEEEEc
Confidence 22321 348999999954211 000 0000000000 00123456678899999999
Q ss_pred CHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 324 S~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
|+...+.+.+ .++. .....+.+|+||+|.+.|.|..+. . .++..+.+ .+.+
T Consensus 162 s~~~~~~~~~--~~~~-----~~~~~~~vi~n~vd~~~~~~~~~~--------------~------~~~~~~~~--~~~~ 212 (392)
T cd03805 162 SNFTASVFKK--TFPS-----LAKNPREVVYPCVDTDSFESTSED--------------P------DPGLLIPK--SGKK 212 (392)
T ss_pred ChhHHHHHHH--Hhcc-----cccCCcceeCCCcCHHHcCccccc--------------c------cccccccC--CCce
Confidence 9998887763 2221 112345699999999988764311 0 11112233 2678
Q ss_pred EEEEEcCCccccCHHHHHHHHhhcccC-----CcEEEEEecCCcc
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIKE-----NVQIIVLVSITIR 443 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~~-----~v~lvIvG~G~~~ 443 (454)
+|+++||+.++||++.|++|++++.+. +++|+|+|+|+.+
T Consensus 213 ~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~ 257 (392)
T cd03805 213 TFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPR 257 (392)
T ss_pred EEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCC
Confidence 999999999999999999999998653 7999999998753
No 29
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.78 E-value=1.7e-17 Score=165.04 Aligned_cols=208 Identities=17% Similarity=0.158 Sum_probs=136.4
Q ss_pred ceEEEEecccCC--CCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCc
Q 012874 85 LNILFVGTEVAP--WSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (454)
Q Consensus 85 MkIl~vs~e~~P--~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV 162 (454)
|||++|++++.| -...||++.++.+|+++|.++||+|+++++..+..... . .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~-----------------~---------~ 54 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP-----------------L---------V 54 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc-----------------e---------e
Confidence 899999998743 23579999999999999999999999999865421100 0 0
Q ss_pred eEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHH
Q 012874 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (454)
Q Consensus 163 ~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~ 242 (454)
.. ...+.... .. ............+.+.+++ .+|| |||+|++....+
T Consensus 55 ~~--~~~~~~~~---------~~---------~~~~~~~~~~~~~~~~~~~------------~~~D-ivh~~~~~~~~~ 101 (335)
T cd03802 55 PV--VPEPLRLD---------AP---------GRDRAEAEALALAERALAA------------GDFD-IVHNHSLHLPLP 101 (335)
T ss_pred ec--cCCCcccc---------cc---------hhhHhhHHHHHHHHHHHhc------------CCCC-EEEecCcccchh
Confidence 00 00000000 00 0000111112222333332 3799 999999876554
Q ss_pred HHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceec
Q 012874 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (454)
Q Consensus 243 ~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~Vit 322 (454)
+.. ..++|+|+|+|+...... .. ........+.+++
T Consensus 102 ---~~~-------~~~~~~v~~~h~~~~~~~-------------------------------~~---~~~~~~~~~~~~~ 137 (335)
T cd03802 102 ---FAR-------PLPVPVVTTLHGPPDPEL-------------------------------LK---LYYAARPDVPFVS 137 (335)
T ss_pred ---hhc-------ccCCCEEEEecCCCCccc-------------------------------ch---HHHhhCcCCeEEE
Confidence 221 268899999998642100 00 1223456789999
Q ss_pred cCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCC
Q 012874 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (454)
Q Consensus 323 VS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~ 402 (454)
+|+...+.+.. ..++.+||||+|.+.|.+.. .+.
T Consensus 138 ~s~~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~---------------------------------~~~ 171 (335)
T cd03802 138 ISDAQRRPWPP-------------LPWVATVHNGIDLDDYPFRG---------------------------------PKG 171 (335)
T ss_pred ecHHHHhhccc-------------ccccEEecCCcChhhCCCCC---------------------------------CCC
Confidence 99987766542 15789999999999886521 135
Q ss_pred cEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccc
Q 012874 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRN 444 (454)
Q Consensus 403 ~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~ 444 (454)
..|+|+||+.++||++.|++|+... +++|+|+|.|+...
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~~---~~~l~i~G~~~~~~ 210 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARRA---GIPLKLAGPVSDPD 210 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHhc---CCeEEEEeCCCCHH
Confidence 6899999999999999999998653 79999999997543
No 30
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.77 E-value=1.7e-17 Score=176.05 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=167.2
Q ss_pred EEEecccCCCCCCCcHhHHHhhhhHHHHHC-CCeEEEEEecCCccc-ccC---Ccce-EEEEEeCC-eeeEEEEEEE--e
Q 012874 88 LFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRYDQYK-DAW---DTDV-VIELKVGD-KIEKVRFFHC--H 158 (454)
Q Consensus 88 l~vs~e~~P~~~~GGlg~~v~~La~aL~~~-GheV~Vi~p~y~~~~-~~~---d~~~-~~~v~~~~-~~~~v~~~~~--~ 158 (454)
.-+++|+.- ++||+-+++..-++.+++. |-+..++.|..++.. ... ++.. .+.-.+.. +.+.+++... .
T Consensus 5 fE~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~ 82 (590)
T cd03793 5 FEVAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWL 82 (590)
T ss_pred EEEeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEE
Confidence 346788876 8999999999999998875 999999999865311 111 0000 00000000 0111111111 1
Q ss_pred eCCceEE-EecCc-------chhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhh-cccCCCCCCCCCCCC
Q 012874 159 KRGVDRV-FVDHP-------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGED 229 (454)
Q Consensus 159 ~~GV~~~-~i~~p-------~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l-~~~~~~~~~~~~~pD 229 (454)
..|-+.+ .+|.. .++..+|...| +=++....+|.+ ..-|++.+..+++..... . +.++|
T Consensus 83 i~G~P~viL~D~~~~~~~~~~~~~~lW~~~~--i~s~~~~~d~ne-a~~fgy~~~~~i~~~~~~~~---------~~~~d 150 (590)
T cd03793 83 IEGYPKVVLFDIGSAAWKLDEWKGELWELCG--IGSPEGDRETND-AIIFGFLVAWFLGEFAEQFD---------DEPAV 150 (590)
T ss_pred cCCCCeEEEEeCchhhhhHHHHHHHHHHHcC--CCCCCCCCcchH-HHHHHHHHHHHHHHHHhhcc---------CCCCe
Confidence 2454444 34432 23445564332 222233345533 334444443333322221 1 23799
Q ss_pred EEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCC--Ccc-cc----ccCCCCcccccccccccCCCCCc
Q 012874 230 VVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRF--AFE-DF----GLLNLPAQFKSSFDFIDGYNKPV 302 (454)
Q Consensus 230 ~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~--~~~-~~----~~l~lp~~~~~~~~~~~~~~k~~ 302 (454)
|+|+|+|+++..+.+++.. ..++|+|+|+|.... |+. ... ++ ...+..... . +..
T Consensus 151 -ViH~HeWm~g~a~~~lK~~------~~~VptVfTtHAT~~-GR~l~~g~~~~y~~l~~~~~d~eA-~--------~~~- 212 (590)
T cd03793 151 -VAHFHEWQAGVGLPLLRKR------KVDVSTIFTTHATLL-GRYLCAGNVDFYNNLDYFDVDKEA-G--------KRG- 212 (590)
T ss_pred -EEEEcchhHhHHHHHHHHh------CCCCCEEEEeccccc-ccccccCCcccchhhhhcchhhhh-h--------ccc-
Confidence 9999999999999888853 268999999997753 542 221 10 000100000 0 000
Q ss_pred ccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCcccc-cc
Q 012874 303 RGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV-MD 381 (454)
Q Consensus 303 ~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~-~~ 381 (454)
-..+..+++++...||++||||+.+++|+.. .|+.+. + . +||||+|...|.+..+. ... ..
T Consensus 213 I~~r~~iE~~aa~~Ad~fttVS~it~~E~~~--Ll~~~p------d-~-ViPNGid~~~f~~~~e~--------~~~~~~ 274 (590)
T cd03793 213 IYHRYCIERAAAHCAHVFTTVSEITAYEAEH--LLKRKP------D-V-VLPNGLNVKKFSALHEF--------QNLHAQ 274 (590)
T ss_pred chHHHHHHHHHHhhCCEEEECChHHHHHHHH--HhCCCC------C-E-EeCCCcchhhcccchhh--------hhhhHH
Confidence 0123457888999999999999999999884 445432 2 2 99999999999765310 000 00
Q ss_pred chHH----HHHHHHHHhCCCCCCCCcEEEE-EcCCcc-ccCHHHHHHHHhhccc
Q 012874 382 AKPL----LKEALQAEVGLPVDRNIPVIGF-IGRLEE-QKGSDILAAAIPHFIK 429 (454)
Q Consensus 382 ~k~~----~k~~lr~~~Gl~~~~~~~lIlf-vGRL~~-qKG~d~LieA~~~l~~ 429 (454)
+|.. .+..++.+++++. +.++++| +||++. +||+|.||+|++++..
T Consensus 275 ~k~ki~~f~~~~~~~~~~~~~--d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 275 SKEKINEFVRGHFYGHYDFDL--DKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred hhhhhhHHHHHHHhhhcCCCC--CCeEEEEEeeccccccCCHHHHHHHHHHHHH
Confidence 1111 1223455567653 6788888 799999 9999999999999865
No 31
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.77 E-value=4.2e-17 Score=163.75 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=149.0
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..+ ..||.+.++.+++++|.+.||+|+++++..... .+... ....|+.++
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~--~~~~~------------------~~~~~~~~~ 56 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG--DYDDE------------------IEKLGGKIY 56 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCc--chHHH------------------HHHcCCeEE
Confidence 689998865 469999999999999999999999999874321 00000 001244444
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.+..+. .+..+ +...+.+++++ .+|| |||+|......++.+
T Consensus 57 ~~~~~~-----------------------~~~~~---~~~~~~~~~~~------------~~~D-vv~~~~~~~~~~~~~ 97 (358)
T cd03812 57 YIPARK-----------------------KNPLK---YFKKLYKLIKK------------NKYD-IVHVHGSSASGFILL 97 (358)
T ss_pred EecCCC-----------------------ccHHH---HHHHHHHHHhc------------CCCC-EEEEeCcchhHHHHH
Confidence 322110 00111 11222233332 3799 999998775555444
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
+.... ....++++.|+..+...... .. .....+.+.....+|.++++|+
T Consensus 98 ~~~~~------~~~~~v~~~~~~~~~~~~~~----------~~---------------~~~~~~~~~~~~~~~~~i~~s~ 146 (358)
T cd03812 98 AAKKA------GVKVRIAHSHNTSDSHDKKK----------KI---------------LKYKVLRKLINRLATDYLACSE 146 (358)
T ss_pred HHhhC------CCCeEEEEeccccccccccc----------hh---------------hHHHHHHHHHHhcCCEEEEcCH
Confidence 44321 23345778887643221100 00 0001234456778999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
..++.+.+ . +.+.++.+||||+|.+.|.+... .++. +++.+... +.++|
T Consensus 147 ~~~~~~~~--~--------~~~~~~~vi~ngvd~~~~~~~~~------------------~~~~-~~~~~~~~--~~~~i 195 (358)
T cd03812 147 EAGKWLFG--K--------VKNKKFKVIPNGIDLEKFIFNEE------------------IRKK-RRELGILE--DKFVI 195 (358)
T ss_pred HHHHHHHh--C--------CCcccEEEEeccCcHHHcCCCch------------------hhhH-HHHcCCCC--CCEEE
Confidence 98888763 1 12478999999999998865421 1111 34455543 67899
Q ss_pred EEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
+|+||+.++||++.|++|+..+.+. +++++|+|+|+..
T Consensus 196 ~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~ 235 (358)
T cd03812 196 GHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELE 235 (358)
T ss_pred EEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchH
Confidence 9999999999999999999999763 8999999999853
No 32
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.77 E-value=1.9e-18 Score=170.94 Aligned_cols=236 Identities=22% Similarity=0.301 Sum_probs=157.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
++|++|+..|+| ..||.+.++..|++.|.+.||.|.+++..|++.. .+|+ ..+|.++
T Consensus 1 ~~i~mVsdff~P--~~ggveshiy~lSq~li~lghkVvvithayg~r~------------------giry---lt~glkV 57 (426)
T KOG1111|consen 1 SRILMVSDFFYP--STGGVESHIYALSQCLIRLGHKVVVITHAYGNRV------------------GIRY---LTNGLKV 57 (426)
T ss_pred CcceeeCccccc--CCCChhhhHHHhhcchhhcCCeEEEEeccccCcc------------------ceee---ecCCceE
Confidence 589999999999 6899999999999999999999999999987532 1222 2467999
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
|+++.+..++. .|-..+|+. ++++ |.+-+ +.+.. |||.|...+++.-=
T Consensus 58 yylp~~v~~n~---tT~ptv~~~------------~Pll--------r~i~l--------rE~I~-ivhghs~fS~lahe 105 (426)
T KOG1111|consen 58 YYLPAVVGYNQ---TTFPTVFSD------------FPLL--------RPILL--------RERIE-IVHGHSPFSYLAHE 105 (426)
T ss_pred EEEeeeeeecc---cchhhhhcc------------Cccc--------chhhh--------hhceE-EEecCChHHHHHHH
Confidence 98875533221 011122221 1111 11111 12678 99999876655421
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
.+ ++ ++..+-++|+|-|.+. | +.++. .... .+.+...+...|++|+||
T Consensus 106 ~l--~h---artMGlktVfTdHSlf--G---fad~~-----si~~-----------------n~ll~~sL~~id~~IcVs 153 (426)
T KOG1111|consen 106 AL--MH---ARTMGLKTVFTDHSLF--G---FADIG-----SILT-----------------NKLLPLSLANIDRIICVS 153 (426)
T ss_pred HH--HH---HHhcCceEEEeccccc--c---ccchh-----hhhh-----------------cceeeeeecCCCcEEEEe
Confidence 11 11 1125789999999852 2 22211 0000 012233566789999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
..-.+... -+ ..+...++.+|||.||+..|.|... + - .+.+...
T Consensus 154 htskentv---lr-----~~L~p~kvsvIPnAv~~~~f~P~~~----------~-----------------~-~S~~i~~ 197 (426)
T KOG1111|consen 154 HTSKENTV---LR-----GALAPAKVSVIPNAVVTHTFTPDAA----------D-----------------K-PSADIIT 197 (426)
T ss_pred ecCCCceE---EE-----eccCHhHeeeccceeeccccccCcc----------c-----------------c-CCCCeeE
Confidence 76443322 11 2345689999999999999999431 0 0 1224567
Q ss_pred EEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
|.+++||..+||+|+|+++++++++ ++++|+|+|+||.+
T Consensus 198 ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~ 238 (426)
T KOG1111|consen 198 IVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKR 238 (426)
T ss_pred EEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCccc
Confidence 9999999999999999999999988 48999999999965
No 33
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.76 E-value=6.8e-17 Score=166.94 Aligned_cols=248 Identities=21% Similarity=0.252 Sum_probs=142.7
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
|||||...|++- ...|+++|+++||+|+++++......+ .||+++
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~--------------------------~~v~~~ 45 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP--------------------------GGVRVV 45 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC--------------------------CCeeEE
Confidence 689998876531 357999999999999999987542111 135555
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.+..+..-.+ ..+ +|...........+++.+.+..+.. ..++|| |||+|.... .+.+
T Consensus 46 ~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~pd-vi~~h~~~~--~~~~ 102 (396)
T cd03818 46 RYRPPRGPTS-------GTH------PYLREFEEAVLRGQAVARALLALRA-------KGFRPD-VIVAHPGWG--ETLF 102 (396)
T ss_pred EecCCCCCCC-------CCC------ccchhHHHHHHHHHHHHHHHHHHHh-------cCCCCC-EEEECCccc--hhhh
Confidence 5432211000 111 1333332222223344444443321 146899 999996332 1234
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcc-cCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAY-QGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~-~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
++.. +.++|+|.++|-... .|. + .+....+.......... .....+....+..+|.+|++|
T Consensus 103 l~~~------~~~~~~v~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ad~vi~~s 164 (396)
T cd03818 103 LKDV------WPDAPLIGYFEFYYRAEGA----D---VGFDPEFPPSLDDALRL-----RNRNALILLALAQADAGVSPT 164 (396)
T ss_pred HHHh------CCCCCEEEEEeeeecCCCC----C---CCCCCCCCCchhHHHHH-----HHhhhHhHHHHHhCCEEECCC
Confidence 4443 257899887764311 110 0 01110100000000000 000112345788999999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+..++.+.+ .+ ..++.+||||+|.+.|.|.... ...++...+++ ++.++
T Consensus 165 ~~~~~~~~~--~~---------~~ki~vI~ngvd~~~f~~~~~~------------------~~~~~~~~~~~--~~~~~ 213 (396)
T cd03818 165 RWQRSTFPA--EL---------RSRISVIHDGIDTDRLRPDPQA------------------RLRLPNGRVLT--PGDEV 213 (396)
T ss_pred HHHHhhCcH--hh---------ccceEEeCCCccccccCCCchh------------------hhcccccccCC--CCCeE
Confidence 988777652 11 2689999999999999875310 01111122233 26789
Q ss_pred EEEEcC-CccccCHHHHHHHHhhccc--CCcEEEEEecC
Q 012874 405 IGFIGR-LEEQKGSDILAAAIPHFIK--ENVQIIVLVSI 440 (454)
Q Consensus 405 IlfvGR-L~~qKG~d~LieA~~~l~~--~~v~lvIvG~G 440 (454)
|+|+|| ++++||++.|++|++.+.+ .+++|+|+|++
T Consensus 214 i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~ 252 (396)
T cd03818 214 ITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGD 252 (396)
T ss_pred EEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 999998 9999999999999999876 48999999974
No 34
>PLN00142 sucrose synthase
Probab=99.76 E-value=4.3e-17 Score=179.67 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=164.4
Q ss_pred ceEEEEecccC--C-----CCCCCcHhHHHhhhh--------HHHHHCCCeEE----EEEecCCcccccCCcc-eEEEEE
Q 012874 85 LNILFVGTEVA--P-----WSKTGGLGDVLGGLP--------PALAANGHRVM----TIAPRYDQYKDAWDTD-VVIELK 144 (454)
Q Consensus 85 MkIl~vs~e~~--P-----~~~~GGlg~~v~~La--------~aL~~~GheV~----Vi~p~y~~~~~~~d~~-~~~~v~ 144 (454)
|||++|+..-+ | ..-+||.-.||.+++ ++|+++||+|+ |++..-+... +.+. ..++.
T Consensus 280 ~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~--~~~~~~~~e~- 356 (815)
T PLN00142 280 FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAK--GTTCNQRLEK- 356 (815)
T ss_pred HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCcc--CCcccCccee-
Confidence 89999988753 1 235899999997655 67888999875 8876543211 1110 10110
Q ss_pred eCCeeeEEEEEEEeeCCceEEEecC-c------chhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhccc
Q 012874 145 VGDKIEKVRFFHCHKRGVDRVFVDH-P------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLN 217 (454)
Q Consensus 145 ~~~~~~~v~~~~~~~~GV~~~~i~~-p------~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~ 217 (454)
+ .-.+|+.++.++. | .|.+| ..++. | ..-|+..+.+.+....
T Consensus 357 -------v----~~~~~~~I~rvP~g~~~~~l~~~i~k------e~l~p------~------L~~f~~~~~~~~~~~~-- 405 (815)
T PLN00142 357 -------V----SGTEHSHILRVPFRTEKGILRKWISR------FDVWP------Y------LETFAEDAASEILAEL-- 405 (815)
T ss_pred -------c----cCCCceEEEecCCCCCccccccccCH------HHHHH------H------HHHHHHHHHHHHHHhc--
Confidence 0 0012444444432 1 11111 01111 1 1234555554443211
Q ss_pred CCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccC
Q 012874 218 SNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDG 297 (454)
Q Consensus 218 ~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~ 297 (454)
...|| |||+|.|.+++++..++.. .++|.|+|.|.+.-.-.. .. ++...-.. +.
T Consensus 406 -------~~~PD-lIHaHYwdsg~vA~~La~~-------lgVP~v~T~HsL~k~K~~-~~-----~~~~~~~e-----~~ 459 (815)
T PLN00142 406 -------QGKPD-LIIGNYSDGNLVASLLAHK-------LGVTQCTIAHALEKTKYP-DS-----DIYWKKFD-----DK 459 (815)
T ss_pred -------CCCCC-EEEECCccHHHHHHHHHHH-------hCCCEEEEcccchhhhcc-cc-----CCcccccc-----hh
Confidence 12699 9999999999999888875 699999999987422110 00 11100000 00
Q ss_pred CCCCcccchHHHHHHHhhhCCceeccCHHHHHHHH-------cCCCCCcc-chhhh-----ccCCeEEEcCCCcCCCCCC
Q 012874 298 YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELV-------SGEDKGVE-LDNII-----RKTGIKGIVNGMDVQEWNP 364 (454)
Q Consensus 298 ~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~-------~~~~~g~~-l~~~l-----~~~~i~vIpNGiD~~~f~p 364 (454)
|. ....+..+..++..||.||+.|......+. +-..|..+ +..++ -..++.+||+|+|...|.|
T Consensus 460 y~---~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P 536 (815)
T PLN00142 460 YH---FSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP 536 (815)
T ss_pred hh---hhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCC
Confidence 00 001133456688899999999976554221 10001100 10110 1248999999999999988
Q ss_pred Ccccc--cccccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecC
Q 012874 365 LTDKY--IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSI 440 (454)
Q Consensus 365 ~~~~~--~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G 440 (454)
..+.. +..-+. .+ +..-...+..++++|+..+++.|+|+++|||.++||++.|++|+.++.+ .+++|+|+|+|
T Consensus 537 ~~~~~~rl~~l~n--~I-~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg 613 (815)
T PLN00142 537 YTEKQKRLTSLHP--SI-EELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGF 613 (815)
T ss_pred CChHHhhHHhhcc--cc-hhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 54210 000000 00 0000112234556887656678999999999999999999999998754 37999999987
No 35
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.75 E-value=1.7e-16 Score=165.71 Aligned_cols=252 Identities=14% Similarity=0.027 Sum_probs=145.1
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCce
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~ 163 (454)
.-||++++.- -+|.+..+..++.+|+++||+|+|+++..+...++ . ....||.
T Consensus 3 ~~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~-----------------~----~~~~~v~ 55 (415)
T cd03816 3 RKRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE-----------------I----LSNPNIT 55 (415)
T ss_pred ccEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH-----------------H----hcCCCEE
Confidence 4577777763 26677777899999999999999999764321100 0 0125677
Q ss_pred EEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHH-HHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCch---
Q 012874 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFS-LLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT--- 239 (454)
Q Consensus 164 ~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~-~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~t--- 239 (454)
++.+..+.. ..+ ......++. ........+++.+.. ..+|| |||+|....
T Consensus 56 ~~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~D-vi~~~~~~~~~~ 109 (415)
T cd03816 56 IHPLPPPPQ-----------RLN------KLPFLLFAPLKVLWQFFSLLWLLYK--------LRPAD-YILIQNPPSIPT 109 (415)
T ss_pred EEECCCCcc-----------ccc------cchHHHHHHHHHHHHHHHHHHHHHh--------cCCCC-EEEEeCCCCchH
Confidence 666543210 000 000111111 011111222221110 12799 899997332
Q ss_pred hHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCC-cccccccccccCCCCCcccchHHHHHHHhhhCC
Q 012874 240 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (454)
Q Consensus 240 a~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp-~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad 318 (454)
+.++.++... .++|+|+|+|+..+.- .. ++.. ..... .-...+++...+.||
T Consensus 110 ~~~a~~~~~~-------~~~~~V~~~h~~~~~~-~~------~~~~~~~~~~-------------~~~~~~e~~~~~~ad 162 (415)
T cd03816 110 LLIAWLYCLL-------RRTKLIIDWHNYGYTI-LA------LKLGENHPLV-------------RLAKWYEKLFGRLAD 162 (415)
T ss_pred HHHHHHHHHH-------hCCeEEEEcCCchHHH-Hh------cccCCCCHHH-------------HHHHHHHHHHhhcCC
Confidence 2233333432 5789999999864210 00 0110 00000 001233556678899
Q ss_pred ceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHH------
Q 012874 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA------ 392 (454)
Q Consensus 319 ~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~------ 392 (454)
+||++|+.+.+.+.+ +|. .++++.+|||| |...|.|... ...+..+++
T Consensus 163 ~ii~vS~~~~~~l~~---~~~------~~~ki~vI~Ng-~~~~f~p~~~----------------~~~~~~~~~~~~~~~ 216 (415)
T cd03816 163 YNLCVTKAMKEDLQQ---FNN------WKIRATVLYDR-PPEQFRPLPL----------------EEKHELFLKLAKTFL 216 (415)
T ss_pred EeeecCHHHHHHHHh---hhc------cCCCeeecCCC-CHHHceeCcH----------------HHHHHHHHhcccccc
Confidence 999999999888873 332 34789999999 4566776531 111111111
Q ss_pred -------HhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--------CCcEEEEEecCCc
Q 012874 393 -------EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--------ENVQIIVLVSITI 442 (454)
Q Consensus 393 -------~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--------~~v~lvIvG~G~~ 442 (454)
..++.. ++..+++++|||.++||++.|++|+..+.+ .+++|+|+|+|+.
T Consensus 217 ~~~~~~~~~~~~~-~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~ 280 (415)
T cd03816 217 TRELRIGAVQLSE-ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL 280 (415)
T ss_pred ccccccccceecC-CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc
Confidence 112222 244678899999999999999999999864 2699999999985
No 36
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.74 E-value=1.7e-16 Score=162.43 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=138.0
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..+ ..||++.++.+|.++|.+.||+|++++|...... ++... + + +....|.+.
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~--~~~~~--~---------~---~~~~~g~~~- 59 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEF--FNVTK--K---------F---HNALQGADI- 59 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhH--HHHHH--H---------h---hHhhcCCCC-
Confidence 689998764 3699999999999999999999999998532100 00000 0 0 000011111
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhh-hhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR-ILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir-~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
+ .+.. .+..+ .......++ .+. ..+|| |||+|++....++.
T Consensus 60 -------------------~-------~~~~-~~~~~-~~~~~~~~~~~~~---------~~~~D-vv~~h~~~~~~~~~ 101 (372)
T cd03792 60 -------------------E-------LSEE-EKEIY-LEWNEENAERPLL---------DLDAD-VVVIHDPQPLALPL 101 (372)
T ss_pred -------------------C-------CCHH-HHHHH-HHHHHHHhccccc---------cCCCC-EEEECCCCchhHHH
Confidence 0 0111 11111 111111111 111 23799 99999987433322
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
. +. ..++|+|+++|+..... .. ..+.+++..+..+|.+++.|
T Consensus 102 ~-~~-------~~~~~~i~~~H~~~~~~-------------~~-----------------~~~~~~~~~~~~~d~~i~~~ 143 (372)
T cd03792 102 F-KK-------KRGRPWIWRCHIDLSSP-------------NR-----------------RVWDFLQPYIEDYDAAVFHL 143 (372)
T ss_pred h-hh-------cCCCeEEEEeeeecCCC-------------cH-----------------HHHHHHHHHHHhCCEEeecH
Confidence 2 21 13789999999753110 00 11234556677899999888
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCC-CCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQE-WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~-f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
+.++.. +. ...++ +||||||... +... + .+..++.+++++|++. +.+
T Consensus 144 ~~~~~~-------~~------~~~~~-vipngvd~~~~~~~~--------~--------~~~~~~~~~~~~~~~~--~~~ 191 (372)
T cd03792 144 PEYVPP-------QV------PPRKV-IIPPSIDPLSGKNRE--------L--------SPADIEYILEKYGIDP--ERP 191 (372)
T ss_pred HHhcCC-------CC------CCceE-EeCCCCCCCccccCC--------C--------CHHHHHHHHHHhCCCC--CCc
Confidence 433211 11 12445 9999999753 2111 0 1123455677888875 678
Q ss_pred EEEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCc
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITI 442 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~ 442 (454)
+|+++|||.++||++.|++|++.+.+. +++|+|+|+|+.
T Consensus 192 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~ 232 (372)
T cd03792 192 YITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGAT 232 (372)
T ss_pred EEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCC
Confidence 999999999999999999999988663 799999999965
No 37
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.74 E-value=1.8e-16 Score=161.71 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=141.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC-CcccccCCcceEEEEEeCCeeeEEEEEEEeeCCce
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY-DQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y-~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~ 163 (454)
-||+||...+ ..||++.++..|+++|.++||+++|++-.. +.+... ....|+.
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~i~ 55 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKR----------------------IQRPDVA 55 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHH----------------------HHhcCce
Confidence 4899998765 469999999999999999999999997432 111110 0124566
Q ss_pred EEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHH
Q 012874 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (454)
Q Consensus 164 ~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~ 243 (454)
++.+..+. . . + + .+...+.++++. ++|| |||+|+..+. .+
T Consensus 56 ~~~~~~~~------------~-~---------~---~-~~~~~l~~~l~~------------~~~D-ivh~~~~~~~-~~ 95 (374)
T TIGR03088 56 FYALHKQP------------G-K---------D---V-AVYPQLYRLLRQ------------LRPD-IVHTRNLAAL-EA 95 (374)
T ss_pred EEEeCCCC------------C-C---------C---h-HHHHHHHHHHHH------------hCCC-EEEEcchhHH-HH
Confidence 65443110 0 0 0 0 112233444443 3799 9999975432 22
Q ss_pred HHHHHhccCCCCCCCCeE-EEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHH-HHHhhhCCcee
Q 012874 244 CYLKTMYKPKGMYKSAKV-VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWM-KAGILESDMVL 321 (454)
Q Consensus 244 ~~l~~~~~~~~~~~~~pv-V~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~-k~~i~~ad~Vi 321 (454)
.++... .++|. ++|.|...+.. . ... .....+. +.....+|.++
T Consensus 96 ~~~~~~-------~~~~~~i~~~h~~~~~~---~--------~~~----------------~~~~~~~~~~~~~~~~~~i 141 (374)
T TIGR03088 96 QLPAAL-------AGVPARIHGEHGRDVFD---L--------DGS----------------NWKYRWLRRLYRPLIHHYV 141 (374)
T ss_pred HHHHHh-------cCCCeEEEeecCccccc---c--------hhh----------------HHHHHHHHHHHHhcCCeEE
Confidence 222222 34453 45555432100 0 000 0011222 33445689999
Q ss_pred ccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCC
Q 012874 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (454)
Q Consensus 322 tVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~ 401 (454)
++|+..++.+.+ .++. ...++.+|+||+|.+.|.|.... +...+++...+ .+
T Consensus 142 ~vs~~~~~~~~~--~~~~------~~~~~~vi~ngvd~~~~~~~~~~------------------~~~~~~~~~~~--~~ 193 (374)
T TIGR03088 142 AVSRDLEDWLRG--PVKV------PPAKIHQIYNGVDTERFHPSRGD------------------RSPILPPDFFA--DE 193 (374)
T ss_pred EeCHHHHHHHHH--hcCC------ChhhEEEeccCccccccCCCccc------------------hhhhhHhhcCC--CC
Confidence 999998888764 2332 23689999999999988765310 11122222233 25
Q ss_pred CcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecCCcc
Q 012874 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSITIR 443 (454)
Q Consensus 402 ~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G~~~ 443 (454)
.++|+++||+.++||++.|++|+..+.+. +++|+++|+|+.+
T Consensus 194 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~ 241 (374)
T TIGR03088 194 SVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR 241 (374)
T ss_pred CeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchH
Confidence 78999999999999999999999988652 6899999999753
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.74 E-value=2.4e-16 Score=155.79 Aligned_cols=235 Identities=19% Similarity=0.148 Sum_probs=157.0
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCccc-ccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~-~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
||++++..+.+ ||.+.++..|+++|.+.||+|.+++....... +.. ...|+++
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~i~v 54 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEEL----------------------EEAGVPV 54 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHH----------------------HhcCCeE
Confidence 68999888754 99999999999999999999999986532211 000 0135665
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
+.+..+.. .. . ......+.+++++ .+|| +||+|.++..+.+.
T Consensus 55 ~~~~~~~~-----------~~-------~-------~~~~~~~~~~~~~------------~~~d-iv~~~~~~~~~~~~ 96 (365)
T cd03807 55 YCLGKRPG-----------RP-------D-------PGALLRLYKLIRR------------LRPD-VVHTWMYHADLYGG 96 (365)
T ss_pred EEEecccc-----------cc-------c-------HHHHHHHHHHHHh------------hCCC-EEEeccccccHHHH
Confidence 55432211 00 0 0111223344443 3799 89999887666555
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
..... ..+.|+++++|+...... .... .....+.+.....+|.++++|
T Consensus 97 ~~~~~------~~~~~~i~~~~~~~~~~~-------------~~~~-------------~~~~~~~~~~~~~~~~~i~~s 144 (365)
T cd03807 97 LAARL------AGVPPVIWGIRHSDLDLG-------------KKST-------------RLVARLRRLLSSFIPLIVANS 144 (365)
T ss_pred HHHHh------cCCCcEEEEecCCccccc-------------chhH-------------hHHHHHHHHhccccCeEEecc
Confidence 44432 157899999998753210 0000 001123344556789999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+...+.+.+ ++. ...++.+|+||+|...|.+... .+..++++++++. +.++
T Consensus 145 ~~~~~~~~~---~~~------~~~~~~vi~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~ 195 (365)
T cd03807 145 AAAAEYHQA---IGY------PPKKIVVIPNGVDTERFSPDLD------------------ARARLREELGLPE--DTFL 195 (365)
T ss_pred HHHHHHHHH---cCC------ChhheeEeCCCcCHHhcCCccc------------------chHHHHHhcCCCC--CCeE
Confidence 988888764 232 2367999999999988866431 1234566788874 6788
Q ss_pred EEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCccch
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIRNY 445 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~~~ 445 (454)
|+|+||+.+.||++.|++|+..+.+ .+++|+|+|.|+....
T Consensus 196 i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~ 238 (365)
T cd03807 196 IGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRAN 238 (365)
T ss_pred EEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhH
Confidence 9999999999999999999998876 3799999999876443
No 39
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.73 E-value=2.3e-16 Score=156.99 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=156.0
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|+..++|. .||.+.++..++++|+++||+|+++++............ ......+|++++
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 63 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG---------------YKREEVDGVRVH 63 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc---------------ceEEecCCeEEE
Confidence 799999988873 499999999999999999999999997643222110000 000123566666
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCc-hhHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~-ta~~~~ 244 (454)
.+........ ..+ .....+..+.......+.. . ..+|| +||+|.+. ....+.
T Consensus 64 ~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~-~---------~~~~D-~v~~~~~~~~~~~~~ 116 (394)
T cd03794 64 RVPLPPYKKN-------GLL---------KRLLNYLSFALSALLALLK-R---------RRRPD-VIIATSPPLLIALAA 116 (394)
T ss_pred EEecCCCCcc-------chH---------HHHHhhhHHHHHHHHHHHh-c---------ccCCC-EEEEcCChHHHHHHH
Confidence 5532211000 000 0111111222222222221 1 13799 89999733 222222
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
..... ..++|+++++|+......... ....... ........+++..+..+|.++++|
T Consensus 117 ~~~~~------~~~~~~i~~~h~~~~~~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~~~~d~vi~~s 173 (394)
T cd03794 117 LLLAR------LKGAPFVLEVRDLWPESAVAL-----GLLKNGS------------LLYRLLRKLERLIYRRADAIVVIS 173 (394)
T ss_pred HHHHH------hcCCCEEEEehhhcchhHHHc-----cCccccc------------hHHHHHHHHHHHHHhcCCEEEEEC
Confidence 22221 148999999998743211000 0000000 000012244567788999999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+..++.+.. ++ +...++.+||||+|...+.+.... .. +.+.... .+.++
T Consensus 174 ~~~~~~~~~---~~------~~~~~~~~i~~~~~~~~~~~~~~~-------------------~~-~~~~~~~--~~~~~ 222 (394)
T cd03794 174 PGMREYLVR---RG------VPPEKISVIPNGVDLELFKPPPAD-------------------ES-LRKELGL--DDKFV 222 (394)
T ss_pred HHHHHHHHh---cC------CCcCceEEcCCCCCHHHcCCccch-------------------hh-hhhccCC--CCcEE
Confidence 999988762 22 123689999999998877654310 00 2223332 35678
Q ss_pred EEEEcCCccccCHHHHHHHHhhcccC-CcEEEEEecCCcc
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLVSITIR 443 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~~-~v~lvIvG~G~~~ 443 (454)
|+|+||+.++||++.+++|+..+.+. +++|+|+|+|+..
T Consensus 223 i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~ 262 (394)
T cd03794 223 VLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEK 262 (394)
T ss_pred EEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccH
Confidence 99999999999999999999998775 8999999998754
No 40
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.72 E-value=3.1e-16 Score=163.35 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=103.8
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 226 ~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
.+|| +||+|.++++.+...++... ....|+++|+|+.+.... . .. . .
T Consensus 117 ~~~d-iihaH~~~~~~~~~~~~~~~-----~~~~~~~~t~Hg~d~~~~---------~----~~------~--------~ 163 (406)
T PRK15427 117 FVAD-VFIAHFGPAGVTAAKLRELG-----VLRGKIATIFHGIDISSR---------E----VL------N--------H 163 (406)
T ss_pred CCCC-EEEEcCChHHHHHHHHHHhC-----CCCCCeEEEEcccccccc---------h----hh------h--------h
Confidence 4799 99999988776666665421 124567889998642100 0 00 0 0
Q ss_pred hHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHH
Q 012874 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (454)
Q Consensus 306 ~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~ 385 (454)
.....+..++.+|.|+++|+...+.+.+ +|. +.+++.+||||+|.+.|.+....
T Consensus 164 ~~~~~~~~~~~ad~vv~~S~~~~~~l~~---~g~------~~~ki~vi~nGvd~~~f~~~~~~----------------- 217 (406)
T PRK15427 164 YTPEYQQLFRRGDLMLPISDLWAGRLQK---MGC------PPEKIAVSRMGVDMTRFSPRPVK----------------- 217 (406)
T ss_pred hhHHHHHHHHhCCEEEECCHHHHHHHHH---cCC------CHHHEEEcCCCCCHHHcCCCccc-----------------
Confidence 0123455678899999999998888874 343 23689999999999988653200
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 386 ~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
.+ .+...|+|+||+.++||++.|++|++.+.+. +++++|+|+|+.+
T Consensus 218 ----------~~--~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~ 265 (406)
T PRK15427 218 ----------AP--ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWE 265 (406)
T ss_pred ----------cC--CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhH
Confidence 01 1345799999999999999999999998763 7999999999853
No 41
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.72 E-value=6.7e-16 Score=153.21 Aligned_cols=249 Identities=20% Similarity=0.181 Sum_probs=148.8
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|+..++| ..||.+.++.+|+++|+++||+|+++++........... ..+...
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 56 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVAL----------------------NGVPVK 56 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhc----------------------cCceee
Confidence 79999998876 579999999999999999999999999765432211000 000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCC-CchhHHH-
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND-WHTSLIP- 243 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~-w~ta~~~- 243 (454)
..... ... ... .... .+........... ..++| |||+|+ |......
T Consensus 57 ~~~~~--~~~--------~~~----------~~~~-~~~~~~~~~~~~~----------~~~~d-ii~~~~~~~~~~~~~ 104 (375)
T cd03821 57 LFSIN--VAY--------GLN----------LARY-LFPPSLLAWLRLN----------IREAD-IVHVHGLWSYPSLAA 104 (375)
T ss_pred ecccc--hhh--------hhh----------hhhh-ccChhHHHHHHHh----------CCCCC-EEEEecccchHHHHH
Confidence 00000 000 000 0000 0000011111111 13799 899998 4432222
Q ss_pred HHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceecc
Q 012874 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (454)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitV 323 (454)
..+... .++|+|++.|+......... ..+... -......+..+..+|.++++
T Consensus 105 ~~~~~~-------~~~~~i~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~~i~~~ 156 (375)
T cd03821 105 ARAARK-------YGIPYVVSPHGMLDPWALPH---------KALKKR------------LAWFLFERRLLQAAAAVHAT 156 (375)
T ss_pred HHHHHH-------hCCCEEEEcccccccccccc---------chhhhH------------HHHHHHHHHHHhcCCEEEEC
Confidence 222221 57899999998642211000 000000 00122345566788999999
Q ss_pred CHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 324 S~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
|+.....+.. . ....++.+||||+|.+.|.+... .. .++.++.+. +.+
T Consensus 157 s~~~~~~~~~---~-------~~~~~~~vi~~~~~~~~~~~~~~-------------------~~-~~~~~~~~~--~~~ 204 (375)
T cd03821 157 SEQEAAEIRR---L-------GLKAPIAVIPNGVDIPPFAALPS-------------------RG-RRRKFPILP--DKR 204 (375)
T ss_pred CHHHHHHHHh---h-------CCcccEEEcCCCcChhccCcchh-------------------hh-hhhhccCCC--CCc
Confidence 9776666553 1 12368999999999998866421 01 144555553 678
Q ss_pred EEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCccchHHHHH
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIRNYSTLYT 450 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~~~~~l~~ 450 (454)
+|+|+||+.++||++.+++|+..+.+ .+++|+|+|.++..+...+..
T Consensus 205 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~ 253 (375)
T cd03821 205 IILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQ 253 (375)
T ss_pred EEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHH
Confidence 99999999999999999999999987 489999999987655444443
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.71 E-value=8.7e-16 Score=153.72 Aligned_cols=230 Identities=19% Similarity=0.213 Sum_probs=143.9
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|+..|+|. .||.+.++.+|+++|.++||+|++++......... ....+.+.+
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----------------------~~~~~~~~~ 56 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD----------------------EERNGHRVI 56 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh----------------------hhccCceEE
Confidence 799999988883 79999999999999999999999999764321110 001233333
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.+.. +.. .+.. .+. ..++ ...+ +. ..+|| |||+|+.........
T Consensus 57 ~~~~--~~~---------~~~~----~~~-----~~~~-----~~~~-~~---------~~~~D-ii~~~~~~~~~~~~~ 100 (357)
T cd03795 57 RAPS--LLN---------VAST----PFS-----PSFF-----KQLK-KL---------AKKAD-VIHLHFPNPLADLAL 100 (357)
T ss_pred Eeec--ccc---------cccc----ccc-----HHHH-----HHHH-hc---------CCCCC-EEEEecCcchHHHHH
Confidence 2221 110 0000 000 0011 0111 11 23899 999997443222111
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
... ..++|+++++|+..+.... +. . ....+++..+..+|.|+++|+
T Consensus 101 ~~~-------~~~~~~i~~~h~~~~~~~~-------------~~-------~-------~~~~~~~~~~~~~d~vi~~s~ 146 (357)
T cd03795 101 LLL-------PRKKPVVVHWHSDIVKQKL-------------LL-------K-------LYRPLQRRFLRRADAIVATSP 146 (357)
T ss_pred HHh-------ccCceEEEEEcChhhccch-------------hh-------h-------hhhHHHHHHHHhcCEEEeCcH
Confidence 111 1478999999975322100 00 0 011345667889999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
.+.+.+.. .+.. ..++.+||||+|...|.+... .+. .+...+ .+.+.|
T Consensus 147 ~~~~~~~~--~~~~-------~~~~~~i~~gi~~~~~~~~~~------------------~~~---~~~~~~--~~~~~i 194 (357)
T cd03795 147 NYAETSPV--LRRF-------RDKVRVIPLGLDPARYPRPDA------------------LEE---AIWRRA--AGRPFF 194 (357)
T ss_pred HHHHHHHH--hcCC-------ccceEEecCCCChhhcCCcch------------------hhh---HhhcCC--CCCcEE
Confidence 98887653 1110 257999999999998865421 000 112222 256899
Q ss_pred EEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
+|+||+.++||++.|++|+.++. +++++|+|+|+..
T Consensus 195 ~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~~ 230 (357)
T cd03795 195 LFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPLE 230 (357)
T ss_pred EEecccccccCHHHHHHHHHhcc--CcEEEEEeCChhH
Confidence 99999999999999999999986 8999999999753
No 43
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.71 E-value=6.2e-16 Score=153.72 Aligned_cols=240 Identities=20% Similarity=0.281 Sum_probs=150.6
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..++| ..||.+..+..++.+|+++||+|+++++.......... ..++...
T Consensus 1 kil~~~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~----------------------~~~~~~~ 56 (374)
T cd03817 1 KIGIFTDTYLP--QVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEE----------------------VVVVRPF 56 (374)
T ss_pred CeeEeehhccC--CCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccc----------------------ccccccc
Confidence 79999999888 57999999999999999999999999987654322100 0011111
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCc-hhHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~-ta~~~~ 244 (454)
.+.... ..+ .. ..+. +.....+.++. .+|| |||+|+.. .+..+.
T Consensus 57 ~~~~~~-~~~--------~~------------~~~~-~~~~~~~~~~~------------~~~D-iv~~~~~~~~~~~~~ 101 (374)
T cd03817 57 RVPTFK-YPD--------FR------------LPLP-IPRALIIILKE------------LGPD-IVHTHTPFSLGLLGL 101 (374)
T ss_pred ccccch-hhh--------hh------------cccc-HHHHHHHHHhh------------cCCC-EEEECCchhhhhHHH
Confidence 000000 000 00 0000 11122222332 3799 89999743 233333
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH-HHHHHHhhhCCceecc
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI-NWMKAGILESDMVLTV 323 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~-~~~k~~i~~ad~VitV 323 (454)
.+... .++|+|+++|+.... +.. .......... .... .+++..+..+|.++++
T Consensus 102 ~~~~~-------~~~~~i~~~~~~~~~--~~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~d~i~~~ 155 (374)
T cd03817 102 RVARK-------LGIPVVATYHTMYED--YTH----YVPLGRLLAR-------------AVVRRKLSRRFYNRCDAVIAP 155 (374)
T ss_pred HHHHH-------cCCCEEEEecCCHHH--HHH----HHhcccchhH-------------HHHHHHHHHHHhhhCCEEEec
Confidence 33332 589999999986421 000 0000000000 0111 3566778899999999
Q ss_pred CHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCc
Q 012874 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (454)
Q Consensus 324 S~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~ 403 (454)
|+..++.+.+ ++. ..++.+||||+|...|.+... +..+++++++. +.+
T Consensus 156 s~~~~~~~~~---~~~-------~~~~~vi~~~~~~~~~~~~~~--------------------~~~~~~~~~~~--~~~ 203 (374)
T cd03817 156 SEKIADLLRE---YGV-------KRPIEVIPTGIDLDRFEPVDG--------------------DDERRKLGIPE--DEP 203 (374)
T ss_pred cHHHHHHHHh---cCC-------CCceEEcCCccchhccCccch--------------------hHHHHhcCCCC--CCe
Confidence 9998777763 332 246999999999988865421 11244556553 568
Q ss_pred EEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCc
Q 012874 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~ 442 (454)
.|+|+||+.++||++.+++|+..+.+ .+++++++|+|+.
T Consensus 204 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~ 244 (374)
T cd03817 204 VLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE 244 (374)
T ss_pred EEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch
Confidence 89999999999999999999999876 4799999999874
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.69 E-value=2.1e-15 Score=149.62 Aligned_cols=230 Identities=19% Similarity=0.205 Sum_probs=142.2
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..++|. ..||.+.++..|+++|+++||+|+++++........... .+...+
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 57 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEV----------------------IGVVVY 57 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccccc----------------------ccceee
Confidence 799999988884 579999999999999999999999999875432211000 000000
Q ss_pred E-----ecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchh
Q 012874 166 F-----VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (454)
Q Consensus 166 ~-----i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta 240 (454)
. .....+... .+. ........+.....+.++. .+|| +||+|.+...
T Consensus 58 ~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~------------~~~d-ii~~~~~~~~ 108 (359)
T cd03823 58 GRPIDEVLRSALPRD--------LFH--------LSDYDNPAVVAEFARLLED------------FRPD-VVHFHHLQGL 108 (359)
T ss_pred ccccccccCCCchhh--------hhH--------HHhccCHHHHHHHHHHHHH------------cCCC-EEEECCccch
Confidence 0 000000000 000 0000001122233334433 3799 8999986432
Q ss_pred HHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCce
Q 012874 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (454)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~V 320 (454)
..+.+.... ..++|+|+++|+..... +. . .+. ....|.+
T Consensus 109 ~~~~~~~~~------~~~~~~i~~~hd~~~~~--~~----------~--------------------~~~---~~~~d~i 147 (359)
T cd03823 109 GVSILRAAR------DRGIPIVLTLHDYWLIC--PR----------Q--------------------GLF---KKGGDAV 147 (359)
T ss_pred HHHHHHHHH------hcCCCEEEEEeeeeeec--ch----------h--------------------hhh---ccCCCEE
Confidence 222221111 14799999999864211 00 0 000 1123999
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~ 400 (454)
+++|+...+.+.+ ++. .+.++.+|+||+|...+.+... +.+ .
T Consensus 148 i~~s~~~~~~~~~---~~~------~~~~~~vi~n~~~~~~~~~~~~---------------------------~~~--~ 189 (359)
T cd03823 148 IAPSRFLLDRYVA---NGL------FAEKISVIRNGIDLDRAKRPRR---------------------------APP--G 189 (359)
T ss_pred EEeCHHHHHHHHH---cCC------CccceEEecCCcChhhcccccc---------------------------CCC--C
Confidence 9999998888874 221 1368999999999988754310 122 2
Q ss_pred CCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchH
Q 012874 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYS 446 (454)
Q Consensus 401 ~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~ 446 (454)
+.++|+|+||+.++||++.|++|+..+.+.+++|+++|.|+.....
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~ 235 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEE 235 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHH
Confidence 5678999999999999999999999987668999999999765544
No 45
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.67 E-value=4.1e-15 Score=149.27 Aligned_cols=229 Identities=16% Similarity=0.175 Sum_probs=141.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
|||++++.. + ..||.+.++..++++|.++||+|++++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------------------------------- 41 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------------------------------- 41 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecc-----------------------------------
Confidence 899999764 2 3599999999999999999999999985421
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
.+.+ .++ ..+|| |||+|.+..+.+..
T Consensus 42 ------~~~~-----------------------------------~~~------------~~~~d-iih~~~~~~~~~~~ 67 (365)
T cd03825 42 ------ALIS-----------------------------------KIE------------IINAD-IVHLHWIHGGFLSI 67 (365)
T ss_pred ------hhhh-----------------------------------Chh------------cccCC-EEEEEccccCccCH
Confidence 0000 011 13799 99999867655544
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccC-CCCc-cccccCCCCcccccccccccCCCC-CcccchHHHHHHHh-hhCCce
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQG-RFAF-EDFGLLNLPAQFKSSFDFIDGYNK-PVRGRKINWMKAGI-LESDMV 320 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g-~~~~-~~~~~l~lp~~~~~~~~~~~~~~k-~~~~~~~~~~k~~i-~~ad~V 320 (454)
.+...+ ..++|+|+|+|+..+.. .+.. .... ........+ .+...+.. ......+...+..+ ..++.+
T Consensus 68 ~~~~~~-----~~~~~~v~~~hd~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (365)
T cd03825 68 EDLSKL-----LDRKPVVWTLHDMWPFTGGCHYPGGCD--RYKTECGNC-PQLGSYPEKDLSRWIWRRKRKAWADLNLTI 139 (365)
T ss_pred HHHHHH-----HcCCCEEEEcccCcccccccCCccccc--cccccCCCC-CCCCCCCcccHHHHHHHHHHHHhccCCcEE
Confidence 333321 13899999999874321 0000 0000 000000000 00000000 00001112222222 456789
Q ss_pred eccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCC
Q 012874 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (454)
Q Consensus 321 itVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~ 400 (454)
+++|+...+.+.+ .+. +...++.+||||+|.+.|.|.. ++..++.++++.
T Consensus 140 v~~s~~~~~~~~~--~~~------~~~~~~~vi~ngi~~~~~~~~~--------------------~~~~~~~~~~~~-- 189 (365)
T cd03825 140 VAPSRWLADCARS--SSL------FKGIPIEVIPNGIDTTIFRPRD--------------------KREARKRLGLPA-- 189 (365)
T ss_pred EehhHHHHHHHHh--ccc------cCCCceEEeCCCCcccccCCCc--------------------HHHHHHHhCCCC--
Confidence 9999887777763 111 2347899999999999886642 233566677775
Q ss_pred CCcEEEEEcCCcc--ccCHHHHHHHHhhccc---CCcEEEEEecCCccc
Q 012874 401 NIPVIGFIGRLEE--QKGSDILAAAIPHFIK---ENVQIIVLVSITIRN 444 (454)
Q Consensus 401 ~~~lIlfvGRL~~--qKG~d~LieA~~~l~~---~~v~lvIvG~G~~~~ 444 (454)
+.+++++.|+... +||++.+++|++.+.+ .+++++++|.++...
T Consensus 190 ~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~ 238 (365)
T cd03825 190 DKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEI 238 (365)
T ss_pred CCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhh
Confidence 5577778888766 8999999999999876 579999999987543
No 46
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.66 E-value=1e-14 Score=145.80 Aligned_cols=220 Identities=19% Similarity=0.142 Sum_probs=141.6
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..++| |.+.++.++.++|.++||+|+|+++.........+. .. ..+..+
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~-----------------~~--~~~~~~- 55 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHPE-----------------DR--AELART- 55 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccccc-----------------cc--ccccch-
Confidence 69999988644 378999999999999999999999875432110000 00 000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.+..+ ......+...+...++. .++| |||+|.+........
T Consensus 56 -----~~~~~---------------------~~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~~~~ 96 (355)
T cd03799 56 -----RYLAR---------------------SLALLAQALVLARELRR------------LGID-HIHAHFGTTPATVAM 96 (355)
T ss_pred -----HHHHH---------------------HHHHHHHHHHHHHHHHh------------cCCC-EEEECCCCchHHHHH
Confidence 00000 00111112222222321 3799 999997654433333
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
+... ..++|+++++|+...... ....+++..++.+|.++++|+
T Consensus 97 ~~~~------~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~vi~~s~ 139 (355)
T cd03799 97 LASR------LGGIPYSFTAHGKDIFRS-------------------------------PDAIDLDEKLARADFVVAISE 139 (355)
T ss_pred HHHH------hcCCCEEEEEeccccccc-------------------------------CchHHHHHHHhhCCEEEECCH
Confidence 3332 147899999997532110 000235567788999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
..++.+.+ .++. ...++.+||||+|.+.|.+... .. ..+.+.|
T Consensus 140 ~~~~~l~~--~~~~------~~~~~~vi~~~~d~~~~~~~~~---------------------------~~--~~~~~~i 182 (355)
T cd03799 140 YNRQQLIR--LLGC------DPDKIHVVHCGVDLERFPPRPP---------------------------PP--PGEPLRI 182 (355)
T ss_pred HHHHHHHH--hcCC------CcccEEEEeCCcCHHHcCCccc---------------------------cc--cCCCeEE
Confidence 99998874 2232 2368999999999888765310 01 1245789
Q ss_pred EEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
+|+||+.++||++.+++|+..+.+. +++|+|+|.|+..
T Consensus 183 ~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~ 222 (355)
T cd03799 183 LSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR 222 (355)
T ss_pred EEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccH
Confidence 9999999999999999999998774 8999999998754
No 47
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.66 E-value=3e-15 Score=152.78 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=132.4
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHC--CCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~--GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV 162 (454)
|||++++.. .| ..||++.++.+|+++|.++ ||+|.++++...... .|. +.+
T Consensus 1 mkI~~~~~~-~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~~-----------------------~~~ 53 (359)
T PRK09922 1 MKIAFIGEA-VS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AWL-----------------------KEI 53 (359)
T ss_pred CeeEEeccc-cc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HHH-----------------------Hhc
Confidence 899999764 34 3599999999999999999 899999998643211 110 000
Q ss_pred eEE-EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhH
Q 012874 163 DRV-FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (454)
Q Consensus 163 ~~~-~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~ 241 (454)
..+ .+.... +. .+. ... ....+.+.+++ .+|| |||+|+..+..
T Consensus 54 ~~~~~~~~~~-~~---------~~~------~~~-------~~~~l~~~l~~------------~~~D-ii~~~~~~~~~ 97 (359)
T PRK09922 54 KYAQSFSNIK-LS---------FLR------RAK-------HVYNFSKWLKE------------TQPD-IVICIDVISCL 97 (359)
T ss_pred chhcccccch-hh---------hhc------ccH-------HHHHHHHHHHh------------cCCC-EEEEcCHHHHH
Confidence 000 000000 00 000 000 01122233443 3899 99999865544
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCcee
Q 012874 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (454)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~Vi 321 (454)
++..++... ....+++.+.|..... ... ..+ ..+..+|.++
T Consensus 98 ~~~~~~~~~-----~~~~~~~~~~h~~~~~---------------~~~-----------------~~~--~~~~~~d~~i 138 (359)
T PRK09922 98 YANKARKKS-----GKQFKIFSWPHFSLDH---------------KKH-----------------AEC--KKITCADYHL 138 (359)
T ss_pred HHHHHHHHh-----CCCCeEEEEecCcccc---------------cch-----------------hhh--hhhhcCCEEE
Confidence 444444331 1235667677753100 000 000 1136799999
Q ss_pred ccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCC
Q 012874 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (454)
Q Consensus 322 tVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~ 401 (454)
++|+...+.+.+ +|. ...++.+||||+|.+.+.... +...+
T Consensus 139 ~~S~~~~~~~~~---~~~------~~~ki~vi~N~id~~~~~~~~------------------------------~~~~~ 179 (359)
T PRK09922 139 AISSGIKEQMMA---RGI------SAQRISVIYNPVEIKTIIIPP------------------------------PERDK 179 (359)
T ss_pred EcCHHHHHHHHH---cCC------CHHHEEEEcCCCCHHHccCCC------------------------------cccCC
Confidence 999999888874 342 235799999999976543110 00114
Q ss_pred CcEEEEEcCCc--cccCHHHHHHHHhhcccCCcEEEEEecCCc
Q 012874 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLVSITI 442 (454)
Q Consensus 402 ~~lIlfvGRL~--~qKG~d~LieA~~~l~~~~v~lvIvG~G~~ 442 (454)
.++|+|+||+. ++||++.|++|++++. .+++|+|+|+|+.
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~-~~~~l~ivG~g~~ 221 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT-GEWQLHIIGDGSD 221 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhC-CCeEEEEEeCCcc
Confidence 57899999996 4699999999999875 4799999999975
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=1.4e-14 Score=159.23 Aligned_cols=156 Identities=11% Similarity=0.090 Sum_probs=97.4
Q ss_pred CCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEE-EEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF-CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~-TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
+|| |||+|...+.+++.++... .++|+|+ |.|+.... .. +..+. .
T Consensus 400 kpD-IVH~h~~~a~~lg~lAa~~-------~gvPvIv~t~h~~~~~-~~----------~~~~~---------------~ 445 (694)
T PRK15179 400 VPS-VVHIWQDGSIFACALAALL-------AGVPRIVLSVRTMPPV-DR----------PDRYR---------------V 445 (694)
T ss_pred CCc-EEEEeCCcHHHHHHHHHHH-------cCCCEEEEEeCCCccc-cc----------hhHHH---------------H
Confidence 799 9999998877776666543 5788876 66764210 00 00000 0
Q ss_pred hHHHHHHHhh--hCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccch
Q 012874 306 KINWMKAGIL--ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383 (454)
Q Consensus 306 ~~~~~k~~i~--~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k 383 (454)
........+. .++.++++|...++.+.+ .+|+ +..++.+||||||...|.|... .
T Consensus 446 ~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~--~~g~------~~~kI~VI~NGVd~~~f~~~~~---------------~ 502 (694)
T PRK15179 446 EYDIIYSELLKMRGVALSSNSQFAAHRYAD--WLGV------DERRIPVVYNGLAPLKSVQDDA---------------C 502 (694)
T ss_pred HHHHHHHHHHhcCCeEEEeCcHHHHHHHHH--HcCC------ChhHEEEECCCcCHHhcCCCch---------------h
Confidence 0001111122 345666777777776653 2342 2468999999999988865320 0
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 384 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 384 ~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
...+..++ ..++ .+.++|+++|||.++||++.|++|+.++.+ .+++|+|+|+|+.+
T Consensus 503 ~~~~~~~~--~~~~--~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~ 560 (694)
T PRK15179 503 TAMMAQFD--ARTS--DARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLL 560 (694)
T ss_pred hHHHHhhc--cccC--CCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcch
Confidence 00011111 1223 256799999999999999999999998876 37999999999743
No 49
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.66 E-value=5.5e-15 Score=147.09 Aligned_cols=238 Identities=22% Similarity=0.233 Sum_probs=146.4
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|+..++| ..||.+.++..|+++|.++||+|+++++.......... ..+.+.
T Consensus 1 kIl~i~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~~~~ 55 (364)
T cd03814 1 RIAIVTDTFLP--QVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA-----------------------RVVPVP 55 (364)
T ss_pred CeEEEecccCc--cccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC-----------------------Cceeec
Confidence 79999999988 35999999999999999999999999976432111000 001110
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCch-hHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT-SLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~t-a~~~~ 244 (454)
.+..+.+ .. ..+ . . .. .....+.++. ++|| +||+|.... +....
T Consensus 56 ~~~~~~~-~~------~~~-~------~-~~-------~~~~~~~~~~------------~~pd-ii~~~~~~~~~~~~~ 100 (364)
T cd03814 56 SVPLPGY-PE------IRL-A------L-PP-------RRRVRRLLDA------------FAPD-VVHIATPGPLGLAAL 100 (364)
T ss_pred ccccCcc-cc------eEe-c------c-cc-------hhhHHHHHHh------------cCCC-EEEEeccchhhHHHH
Confidence 0100100 00 000 0 0 00 0111222222 3899 899986443 22223
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
.+... .++|+++++|+...+- .. ... . .... .....+.+..+..+|.++++|
T Consensus 101 ~~~~~-------~~~~~i~~~~~~~~~~-~~-----~~~-~-~~~~-------------~~~~~~~~~~~~~~d~i~~~s 152 (364)
T cd03814 101 RAARR-------LGIPVVTSYHTDFPEY-LR-----YYG-L-GPLS-------------WLAWAYLRWFHNRADRVLVPS 152 (364)
T ss_pred HHHHH-------cCCCEEEEEecChHHH-hh-----hcc-c-chHh-------------HhhHHHHHHHHHhCCEEEeCC
Confidence 33221 6899999999864211 00 000 0 0000 001234566678899999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+.+.+.+.+ .+ ..++.+++||+|.+.|.|...+ ...+++++ + .+.++
T Consensus 153 ~~~~~~~~~---~~--------~~~~~~~~~g~~~~~~~~~~~~-------------------~~~~~~~~-~--~~~~~ 199 (364)
T cd03814 153 PSLADELRA---RG--------FRRVRLWPRGVDTELFHPRRRD-------------------EALRARLG-P--PDRPV 199 (364)
T ss_pred HHHHHHHhc---cC--------CCceeecCCCccccccCccccc-------------------HHHHHHhC-C--CCCeE
Confidence 998875542 11 2578999999999988765311 11234444 2 25678
Q ss_pred EEEEcCCccccCHHHHHHHHhhcccC-CcEEEEEecCCccc
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLVSITIRN 444 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~~-~v~lvIvG~G~~~~ 444 (454)
|+|+||+.+.||++.+++++..+.+. +++|+|+|+|+...
T Consensus 200 i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~ 240 (364)
T cd03814 200 LLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARA 240 (364)
T ss_pred EEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHH
Confidence 99999999999999999999998763 89999999987543
No 50
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.65 E-value=5.6e-15 Score=147.36 Aligned_cols=240 Identities=16% Similarity=0.128 Sum_probs=150.2
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..+.|. ..||++.++.+|+++|+++||+|+++++........... ......
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---------------------~~~~~~- 57 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPL---------------------RAALRL- 57 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccc---------------------hhcccc-
Confidence 688888877663 579999999999999999999999999875432211000 000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
....... ... ..+..........+.. .+|| |||+|++.....
T Consensus 58 -~~~~~~~---------~~~------------~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~--- 99 (365)
T cd03809 58 -LLRLPRR---------LLW------------GLLFLLRAGDRLLLLL------------LGLD-LLHSPHNTAPLL--- 99 (365)
T ss_pred -ccccccc---------ccc------------chhhHHHHHHHHHhhh------------cCCC-eeeecccccCcc---
Confidence 0000000 000 0001111111122221 2799 999998765433
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
+ ..++|+|+++|+..+...... ...... .....+++..+..+|.++++|+
T Consensus 100 -~--------~~~~~~i~~~hd~~~~~~~~~-------~~~~~~--------------~~~~~~~~~~~~~~d~~i~~s~ 149 (365)
T cd03809 100 -R--------LRGVPVVVTIHDLIPLRFPEY-------FSPGFR--------------RYFRRLLRRALRRADAIITVSE 149 (365)
T ss_pred -c--------CCCCCEEEEeccchhhhCccc-------CCHHHH--------------HHHHHHHHHHHHHcCEEEEccH
Confidence 1 268999999998753221000 000000 0123446677889999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
..++.+.+ .++. ...++.+||||+|...+.+..+ . . +.....+ .+.++|
T Consensus 150 ~~~~~~~~--~~~~------~~~~~~vi~~~~~~~~~~~~~~----------------~---~--~~~~~~~--~~~~~i 198 (365)
T cd03809 150 ATKRDLLR--YLGV------PPDKIVVIPLGVDPRFRPPPAE----------------A---E--VLRALYL--LPRPYF 198 (365)
T ss_pred HHHHHHHH--HhCc------CHHHEEeeccccCccccCCCch----------------H---H--HHHHhcC--CCCCeE
Confidence 99998874 2321 2367999999999988765421 0 0 2222233 256899
Q ss_pred EEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCccchHH
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIRNYST 447 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~~~~~ 447 (454)
+|+||+.++||++.+++++..+.+. +++|+|+|.+.......
T Consensus 199 ~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~ 242 (365)
T cd03809 199 LYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEEL 242 (365)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHH
Confidence 9999999999999999999999775 59999999886544433
No 51
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.65 E-value=8.8e-15 Score=147.85 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=103.4
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 226 ~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
++|| |||+|+...++..+.+... .++|+|+|+|+......... ...... ..
T Consensus 81 ~~~d-vvh~~~~~~~~~~~~~~~~-------~~~p~i~~~h~~~~~~~~~~------~~~~~~---------------~~ 131 (367)
T cd05844 81 HRPD-LVHAHFGFDGVYALPLARR-------LGVPLVVTFHGFDATTSLAL------LLRSRW---------------AL 131 (367)
T ss_pred hCCC-EEEeccCchHHHHHHHHHH-------cCCCEEEEEeCccccccchh------hcccch---------------hH
Confidence 3899 9999976655555444432 58999999997542110000 000000 00
Q ss_pred hHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHH
Q 012874 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (454)
Q Consensus 306 ~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~ 385 (454)
...+.+..++.+|.++++|+...+.+.+ +|. ...++.+|+||+|.+.|.|...
T Consensus 132 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~---~~~------~~~~i~vi~~g~d~~~~~~~~~------------------ 184 (367)
T cd05844 132 YARRRRRLARRAALFIAVSQFIRDRLLA---LGF------PPEKVHVHPIGVDTAKFTPATP------------------ 184 (367)
T ss_pred HHHHHHHHHHhcCEEEECCHHHHHHHHH---cCC------CHHHeEEecCCCCHHhcCCCCC------------------
Confidence 1233455678899999999998888874 332 2367999999999988765320
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCc
Q 012874 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITI 442 (454)
Q Consensus 386 ~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~ 442 (454)
..+.++|+|+||+.++||++.|++|++.+.+. +++|+|+|+|+.
T Consensus 185 -------------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~ 230 (367)
T cd05844 185 -------------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPL 230 (367)
T ss_pred -------------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchH
Confidence 11457899999999999999999999998763 799999999874
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.64 E-value=3.7e-14 Score=139.24 Aligned_cols=239 Identities=27% Similarity=0.352 Sum_probs=151.5
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..++|. .||.+.++..|+++|.+.||+|.++++.......... ......+
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~----------------------~~~~~~~ 56 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE----------------------VGGIVVV 56 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee----------------------ecCccee
Confidence 799999988874 6999999999999999999999999987543221100 0000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.. .. .. ..+. ......+.......++. .+|| +||+|++........
T Consensus 57 ~~--~~-~~--------~~~~----------~~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~~~~ 102 (374)
T cd03801 57 RP--PP-LL--------RVRR----------LLLLLLLALRLRRLLRR------------ERFD-VVHAHDWLALLAAAL 102 (374)
T ss_pred cC--Cc-cc--------ccch----------hHHHHHHHHHHHHHhhh------------cCCc-EEEEechhHHHHHHH
Confidence 00 00 00 0000 00011112222333332 3799 999998886655443
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
+.. ..++|+++++|+..+...... ..... .....+.+..+..+|.++++|+
T Consensus 103 ~~~-------~~~~~~i~~~h~~~~~~~~~~---------~~~~~-------------~~~~~~~~~~~~~~d~~i~~s~ 153 (374)
T cd03801 103 AAR-------LLGIPLVLTVHGLEFGRPGNE---------LGLLL-------------KLARALERRALRRADRIIAVSE 153 (374)
T ss_pred HHH-------hcCCcEEEEeccchhhccccc---------hhHHH-------------HHHHHHHHHHHHhCCEEEEecH
Confidence 332 268999999999754321100 00000 0112345567789999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
...+.+.+ .++. .+.++.+||||+|...|.+.. +..+.....+ .+.+.|
T Consensus 154 ~~~~~~~~--~~~~------~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~--~~~~~i 202 (374)
T cd03801 154 ATREELRE--LGGV------PPEKITVIPNGVDTERFRPAP---------------------RAARRRLGIP--EDEPVI 202 (374)
T ss_pred HHHHHHHh--cCCC------CCCcEEEecCcccccccCccc---------------------hHHHhhcCCc--CCCeEE
Confidence 99988874 2221 125899999999998876531 1112223333 256789
Q ss_pred EEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITI 442 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~ 442 (454)
+|+||+.+.||++.+++|+..+.+. +++|+|+|.++.
T Consensus 203 ~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~ 241 (374)
T cd03801 203 LFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPL 241 (374)
T ss_pred EEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHH
Confidence 9999999999999999999998764 799999997764
No 53
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.62 E-value=3.7e-14 Score=141.47 Aligned_cols=224 Identities=21% Similarity=0.227 Sum_probs=137.9
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||+||+.. +| ..||++.++.+|+++|.++||+|.+++....... +.... ...+...
T Consensus 1 kI~~v~~~-~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~--~~~~~------------------~~~~~~~- 56 (366)
T cd03822 1 RIALVSPY-PP--RKCGIATFTTDLVNALSARGPDVLVVSVAALYPS--LLYGG------------------EQEVVRV- 56 (366)
T ss_pred CeEEecCC-CC--CCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCc--ccCCC------------------cccceee-
Confidence 79999764 55 3799999999999999999999999986543211 00000 0000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHH--
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP-- 243 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~-- 243 (454)
.. .+. ... ...+.+.++. .+|| |||+|.|...+.+
T Consensus 57 -~~---------------~~~----------~~~----~~~~~~~~~~------------~~~d-ii~~~~~~~~~~~~~ 93 (366)
T cd03822 57 -IV---------------LDN----------PLD----YRRAARAIRL------------SGPD-VVVIQHEYGIFGGEA 93 (366)
T ss_pred -ee---------------cCC----------chh----HHHHHHHHhh------------cCCC-EEEEeeccccccchh
Confidence 00 000 000 0112233332 3799 8999986542222
Q ss_pred -HHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceec
Q 012874 244 -CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (454)
Q Consensus 244 -~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~Vit 322 (454)
..+..... ..++|+|+++|+..... +.. ....+++..+..+|.+++
T Consensus 94 ~~~~~~~~~----~~~~~~i~~~h~~~~~~------------~~~-----------------~~~~~~~~~~~~~d~ii~ 140 (366)
T cd03822 94 GLYLLLLLR----GLGIPVVVTLHTVLLHE------------PRP-----------------GDRALLRLLLRRADAVIV 140 (366)
T ss_pred hHHHHHHHh----hcCCCEEEEEecCCccc------------cch-----------------hhhHHHHHHHhcCCEEEE
Confidence 12221110 15899999999962110 000 012334566788999999
Q ss_pred cCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCC
Q 012874 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (454)
Q Consensus 323 VS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~ 402 (454)
+|....+++.. .. ...++.+||||+|...+.+.. . . ++...+ .+.
T Consensus 141 ~s~~~~~~~~~--~~--------~~~~~~~i~~~~~~~~~~~~~-----------------~-----~-~~~~~~--~~~ 185 (366)
T cd03822 141 MSSELLRALLL--RA--------YPEKIAVIPHGVPDPPAEPPE-----------------S-----L-KALGGL--DGR 185 (366)
T ss_pred eeHHHHHHHHh--hc--------CCCcEEEeCCCCcCcccCCch-----------------h-----h-HhhcCC--CCC
Confidence 98555555442 11 026899999999987664421 0 0 122223 257
Q ss_pred cEEEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCccc
Q 012874 403 PVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIRN 444 (454)
Q Consensus 403 ~lIlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~~ 444 (454)
++|+|+||+.++||++.|++|+.++.+. +++|+|+|+|....
T Consensus 186 ~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~ 229 (366)
T cd03822 186 PVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDL 229 (366)
T ss_pred eEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccch
Confidence 8999999999999999999999998773 89999999986543
No 54
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.61 E-value=3.4e-14 Score=144.56 Aligned_cols=226 Identities=17% Similarity=0.030 Sum_probs=137.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
|||++++.+ .||...+..+|+++|.++||+|++++......... ....|+++
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~----------------------~~~~g~~~ 53 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEARL----------------------VPKAGIEF 53 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc----------------------cccCCCcE
Confidence 899998764 58888888999999999999999998754210100 01136777
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
+.++.+..... .. .........+.+.+.++.+.+. .++|| |||+|+|.+++.+.
T Consensus 54 ~~~~~~~~~~~-------~~---------~~~l~~~~~~~~~~~~~~~~ik---------~~~pD-vv~~~~~~~~~~~~ 107 (357)
T PRK00726 54 HFIPSGGLRRK-------GS---------LANLKAPFKLLKGVLQARKILK---------RFKPD-VVVGFGGYVSGPGG 107 (357)
T ss_pred EEEeccCcCCC-------Ch---------HHHHHHHHHHHHHHHHHHHHHH---------hcCCC-EEEECCCcchhHHH
Confidence 66653321000 00 0000111112222222222222 24799 99999988766655
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
++... .++|+|++.|+... . ...+.....+|.+++++
T Consensus 108 ~~~~~-------~~~p~v~~~~~~~~----------------~--------------------~~~r~~~~~~d~ii~~~ 144 (357)
T PRK00726 108 LAARL-------LGIPLVIHEQNAVP----------------G--------------------LANKLLARFAKKVATAF 144 (357)
T ss_pred HHHHH-------cCCCEEEEcCCCCc----------------c--------------------HHHHHHHHHhchheECc
Confidence 54442 58899987765310 0 01233456789999998
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+....+ ....++++|+||+|.+.|.+.. .+.+++++. +.++
T Consensus 145 ~~~~~~--------------~~~~~i~vi~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~~ 185 (357)
T PRK00726 145 PGAFPE--------------FFKPKAVVTGNPVREEILALAA-----------------------PPARLAGRE--GKPT 185 (357)
T ss_pred hhhhhc--------------cCCCCEEEECCCCChHhhcccc-----------------------hhhhccCCC--CCeE
Confidence 743211 1237899999999987664321 012345553 5678
Q ss_pred EEEEcCCccccCHHHHH-HHHhhcccCCcEEEEEecCCccchH
Q 012874 405 IGFIGRLEEQKGSDILA-AAIPHFIKENVQIIVLVSITIRNYS 446 (454)
Q Consensus 405 IlfvGRL~~qKG~d~Li-eA~~~l~~~~v~lvIvG~G~~~~~~ 446 (454)
|+++|+...+|+...++ +|++++.+....++++|+|+.+...
T Consensus 186 i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~ 228 (357)
T PRK00726 186 LLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDLEEVR 228 (357)
T ss_pred EEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHH
Confidence 99999999988875555 9998875443557788999754443
No 55
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.59 E-value=7.3e-14 Score=136.88 Aligned_cols=229 Identities=24% Similarity=0.247 Sum_probs=144.9
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..+. .||.+.++..|+++|.++||+|.+++............ ... ......
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~------------~~~-------~~~~~~ 57 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP------------SNV-------KLIPVR 57 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc------------cch-------hhhcee
Confidence 6889988653 59999999999999999999999999764432111000 000 000000
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCC-chhHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW-HTSLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w-~ta~~~~ 244 (454)
... . ..+. ...+.....+.++. .+|| +||+|++ ...++..
T Consensus 58 ~~~-----~--------~~~~-------------~~~~~~~~~~~~~~------------~~~d-ii~~~~~~~~~~~~~ 98 (353)
T cd03811 58 VLK-----L--------KSLR-------------DLLAILRLRRLLRK------------EKPD-VVISHLTTTPNVLAL 98 (353)
T ss_pred eee-----c--------cccc-------------chhHHHHHHHHHHh------------cCCC-EEEEcCccchhHHHH
Confidence 000 0 0000 01112233344443 3799 8999987 3333332
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
+... .++|+|+++|+........ .. ......+..+..+|.++++|
T Consensus 99 ~~~~--------~~~~~i~~~~~~~~~~~~~------------~~---------------~~~~~~~~~~~~~d~ii~~s 143 (353)
T cd03811 99 LAAR--------LGTKLIVWEHNSLSLELKR------------KL---------------RLLLLIRKLYRRADKIVAVS 143 (353)
T ss_pred HHhh--------cCCceEEEEcCcchhhhcc------------ch---------------hHHHHHHhhccccceEEEec
Confidence 2221 2789999999975322100 00 00023556778899999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+..++.+.+ .++. ...++.+||||+|...+.+...+ . . +.+.+ .+.++
T Consensus 144 ~~~~~~~~~--~~~~------~~~~~~vi~~~~~~~~~~~~~~~-------------------~-~--~~~~~--~~~~~ 191 (353)
T cd03811 144 EGVKEDLLK--LLGI------PPDKIEVIYNPIDIEEIRALAEE-------------------P-L--ELGIP--PDGPV 191 (353)
T ss_pred cchhhhHHH--hhcC------CccccEEecCCcChhhcCcccch-------------------h-h--hcCCC--CCceE
Confidence 998888874 2221 13689999999999887654210 0 0 22333 36688
Q ss_pred EEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
|+|+||+.+.||++.+++|+..+.+. +++|+|+|.|+..
T Consensus 192 i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~ 232 (353)
T cd03811 192 ILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR 232 (353)
T ss_pred EEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccH
Confidence 99999999999999999999999764 8999999998754
No 56
>PLN02275 transferase, transferring glycosyl groups
Probab=99.59 E-value=7.7e-14 Score=143.48 Aligned_cols=152 Identities=15% Similarity=0.048 Sum_probs=98.0
Q ss_pred CCCCEEEEeCCCch---hHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCC-cccccccccccCCCCC
Q 012874 226 YGEDVVFVANDWHT---SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKP 301 (454)
Q Consensus 226 ~~pD~VIH~h~w~t---a~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp-~~~~~~~~~~~~~~k~ 301 (454)
.+|| |||+|..+. .+++.++... .++|+|+|+|+.++.- . .++.. ....
T Consensus 99 ~~~D-vV~~~~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~~-~------~~~~~~~~~~------------ 151 (371)
T PLN02275 99 PRPD-VFLVQNPPSVPTLAVVKLACWL-------RRAKFVIDWHNFGYTL-L------ALSLGRSHPL------------ 151 (371)
T ss_pred CCCC-EEEEeCCCCcHHHHHHHHHHHH-------hCCCEEEEcCCccHHH-H------hcccCCCCHH------------
Confidence 4899 899997443 2233333332 5789999999864210 0 01110 0000
Q ss_pred cccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCcccccc
Q 012874 302 VRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMD 381 (454)
Q Consensus 302 ~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~ 381 (454)
..-...+++...+.+|.||++|+.+.+.+.+ .+|. ++.+||||. .+.|.|...
T Consensus 152 -~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~--~~g~---------~i~vi~n~~-~~~f~~~~~-------------- 204 (371)
T PLN02275 152 -VRLYRWYERHYGKMADGHLCVTKAMQHELDQ--NWGI---------RATVLYDQP-PEFFRPASL-------------- 204 (371)
T ss_pred -HHHHHHHHHHHHhhCCEEEECCHHHHHHHHH--hcCC---------CeEEECCCC-HHHcCcCCc--------------
Confidence 0011234667788899999999999998874 2331 279999994 566766421
Q ss_pred chHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcc------------------c-CCcEEEEEecCCc
Q 012874 382 AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI------------------K-ENVQIIVLVSITI 442 (454)
Q Consensus 382 ~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~------------------~-~~v~lvIvG~G~~ 442 (454)
. + .+.. .+..+|+++||+.++||++.|++|+..+. + .+++|+|+|+|+.
T Consensus 205 --~---~------~~~~-~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~ 272 (371)
T PLN02275 205 --E---I------RLRP-NRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ 272 (371)
T ss_pred --h---h------cccC-CCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC
Confidence 0 0 0111 13357889999999999999999998763 1 3799999999986
Q ss_pred c
Q 012874 443 R 443 (454)
Q Consensus 443 ~ 443 (454)
+
T Consensus 273 ~ 273 (371)
T PLN02275 273 K 273 (371)
T ss_pred H
Confidence 4
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.59 E-value=2.6e-13 Score=133.54 Aligned_cols=233 Identities=19% Similarity=0.200 Sum_probs=149.4
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++.. .||.+.++..|+++|.++||+|+++++....... ....|++.+
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----------------------~~~~~~~~~ 51 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----------------------LEALGVKVI 51 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----------------------cccCCceEE
Confidence 68899875 4899999999999999999999999976432110 012355555
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.++.... .. +..+.......+.+.+++ .+|| |||+|.+...+++.+
T Consensus 52 ~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~------------~~~d-vv~~~~~~~~~~~~~ 97 (359)
T cd03808 52 PIPLDRR----------GI-----------NPFKDLKALLRLYRLLRK------------ERPD-IVHTHTPKPGILGRL 97 (359)
T ss_pred ecccccc----------cc-----------ChHhHHHHHHHHHHHHHh------------cCCC-EEEEccccchhHHHH
Confidence 4432110 00 000111111223333332 3799 899998766665555
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
..... ...++++++|+..+..... .+.. .....+.+..+..+|.++++|+
T Consensus 98 ~~~~~------~~~~~i~~~~~~~~~~~~~-----------~~~~-------------~~~~~~~~~~~~~~d~ii~~s~ 147 (359)
T cd03808 98 AARLA------GVPKVIYTVHGLGFVFTSG-----------GLKR-------------RLYLLLERLALRFTDKVIFQNE 147 (359)
T ss_pred HHHHc------CCCCEEEEecCcchhhccc-----------hhHH-------------HHHHHHHHHHHhhccEEEEcCH
Confidence 44321 4678888888864321100 0000 0112345667788999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
...+.+.+ ++... .+..+.+++||+|.+.+.+... . . ..+.+.|
T Consensus 148 ~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------~-------~--~~~~~~i 191 (359)
T cd03808 148 DDRDLALK---LGIIK----KKKTVLIPGSGVDLDRFSPSPE--------------------P-------I--PEDDPVF 191 (359)
T ss_pred HHHHHHHH---hcCCC----cCceEEecCCCCChhhcCcccc--------------------c-------c--CCCCcEE
Confidence 99888874 22110 1357888999999988765420 0 1 1256789
Q ss_pred EEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCccchHH
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIRNYST 447 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~~~~~ 447 (454)
+|+||+.++||++.+++++..+.+ .+++|+|+|.++.....+
T Consensus 192 ~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~ 235 (359)
T cd03808 192 LFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAA 235 (359)
T ss_pred EEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhH
Confidence 999999999999999999999875 479999999998655444
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.58 E-value=3.1e-13 Score=133.41 Aligned_cols=242 Identities=23% Similarity=0.264 Sum_probs=148.9
Q ss_pred EEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEEE
Q 012874 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (454)
Q Consensus 87 Il~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~~ 166 (454)
|++++..++|. ..||.+.++..++.+|.+.||+|+++++............. . .......
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~------------~-----~~~~~~~-- 60 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKG------------R-----LVGVERL-- 60 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccc------------c-----ccccccc--
Confidence 57888776652 36999999999999999999999999976443221100000 0 0000000
Q ss_pred ecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCc-hhHHHHH
Q 012874 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPCY 245 (454)
Q Consensus 167 i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~-ta~~~~~ 245 (454)
........ . .........+...+...++.. .++|| +||+|... ..++...
T Consensus 61 -~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~l~~~----------~~~~d-ii~~~~~~~~~~~~~~ 111 (377)
T cd03798 61 -PVLLPVVP--------L---------LKGPLLYLLAARALLKLLKLK----------RFRPD-LIHAHFAYPDGFAAAL 111 (377)
T ss_pred -ccCcchhh--------c---------cccchhHHHHHHHHHHHHhcc----------cCCCC-EEEEeccchHHHHHHH
Confidence 00000000 0 000111122333444444411 23899 89999533 2333333
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
+... .++|+++++|+..+..... .. ....+++..+..+|.++++|+
T Consensus 112 ~~~~-------~~~~~i~~~h~~~~~~~~~-----------~~----------------~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 112 LKRK-------LGIPLVVTLHGSDVNLLPR-----------KR----------------LLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHh-------cCCCEEEEeecchhcccCc-----------hh----------------hHHHHHHHHHhcCCeEEeCCH
Confidence 3332 5689999999875321100 00 012445667889999999999
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
...+.+.+ .+ ....++.+++||+|.+.|.+... . +. .+.+.. .+.++|
T Consensus 158 ~~~~~~~~---~~------~~~~~~~~i~~~~~~~~~~~~~~----------------~--~~---~~~~~~--~~~~~i 205 (377)
T cd03798 158 ALADELKA---LG------IDPEKVTVIPNGVDTERFSPADR----------------A--EA---RKLGLP--EDKKVI 205 (377)
T ss_pred HHHHHHHH---hc------CCCCceEEcCCCcCcccCCCcch----------------H--HH---HhccCC--CCceEE
Confidence 98888874 11 12478999999999998876431 0 00 223333 256789
Q ss_pred EEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 406 lfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
+|+|++.+.||++.+++|+..+.+. +++++|+|.|+..
T Consensus 206 ~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~ 245 (377)
T cd03798 206 LFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR 245 (377)
T ss_pred EEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch
Confidence 9999999999999999999998764 7999999998753
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.58 E-value=1.6e-13 Score=134.37 Aligned_cols=218 Identities=19% Similarity=0.156 Sum_probs=138.1
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++..+.| .||.+.++..|+++|+++||+|+++++.... ...+. ...++.+.
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~~---------------------~~~~~~~~ 55 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFYE---------------------LDPKIKVI 55 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCccc---------------------cCCcccee
Confidence 68999887765 6999999999999999999999999976543 11100 01233333
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.+..... .. .+. .......+.+.++. .+|| +||+|++.. . .+
T Consensus 56 ~~~~~~~-~~--------~~~-------------~~~~~~~~~~~l~~------------~~~d-~i~~~~~~~--~-~~ 97 (348)
T cd03820 56 DLGDKRD-SK--------LLA-------------RFKKLRRLRKLLKN------------NKPD-VVISFLTSL--L-TF 97 (348)
T ss_pred ecccccc-cc--------hhc-------------cccchHHHHHhhcc------------cCCC-EEEEcCchH--H-HH
Confidence 2221100 00 000 00011222333332 3899 899998761 1 12
Q ss_pred HHHhccCCCCCCC-CeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 246 LKTMYKPKGMYKS-AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 246 l~~~~~~~~~~~~-~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
+.... .+ +|++++.|+....... . ......++..++.+|.++++|
T Consensus 98 ~~~~~------~~~~~~i~~~~~~~~~~~~-------------~---------------~~~~~~~~~~~~~~d~ii~~s 143 (348)
T cd03820 98 LASLG------LKIVKLIVSEHNSPDAYKK-------------R---------------LRRLLLRRLLYRRADAVVVLT 143 (348)
T ss_pred HHHHh------hccccEEEecCCCccchhh-------------h---------------hHHHHHHHHHHhcCCEEEEeC
Confidence 22211 23 5999999986421100 0 001123667788999999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+..+.... . ....++.+||||+|...+.+. . ..+.+.
T Consensus 144 ~~~~~~~~-----~------~~~~~~~vi~~~~~~~~~~~~------------------------------~--~~~~~~ 180 (348)
T cd03820 144 EEDRALYY-----K------KFNKNVVVIPNPLPFPPEEPS------------------------------S--DLKSKR 180 (348)
T ss_pred HHHHHHhh-----c------cCCCCeEEecCCcChhhcccc------------------------------C--CCCCcE
Confidence 98762221 1 113689999999998765431 0 125678
Q ss_pred EEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 405 IlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
|+|+||+.+.||++.+++|+..+.+ .+++|+|+|+|+.+
T Consensus 181 i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~ 221 (348)
T cd03820 181 ILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER 221 (348)
T ss_pred EEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH
Confidence 9999999999999999999999865 48999999998754
No 60
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.57 E-value=1.6e-13 Score=143.60 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=74.6
Q ss_pred HHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHH
Q 012874 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (454)
Q Consensus 309 ~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~ 388 (454)
+++.....||.++++|+...+.+.+ .++ ...++.+|+||+|++.|.+...
T Consensus 182 ~~~~~~~~aD~ii~~S~~~~~~~~~--~~~-------~~~~~~vi~~gvd~~~~~~~~~--------------------- 231 (419)
T cd03806 182 LYGLAGSFADVVMVNSTWTRNHIRS--LWK-------RNTKPSIVYPPCDVEELLKLPL--------------------- 231 (419)
T ss_pred HHHHHhhcCCEEEECCHHHHHHHHH--HhC-------cCCCcEEEcCCCCHHHhccccc---------------------
Confidence 5667788999999999998888864 222 1147999999999988764320
Q ss_pred HHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC-------CcEEEEEecCCc
Q 012874 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-------NVQIIVLVSITI 442 (454)
Q Consensus 389 ~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~-------~v~lvIvG~G~~ 442 (454)
.. ..+.++|+|+||++++||++.+++|++++.+. +++|+|+|+|..
T Consensus 232 ------~~--~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~ 284 (419)
T cd03806 232 ------DE--KTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRN 284 (419)
T ss_pred ------cc--ccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCC
Confidence 00 12457899999999999999999999998752 599999998753
No 61
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.54 E-value=7.2e-14 Score=125.49 Aligned_cols=176 Identities=22% Similarity=0.261 Sum_probs=92.3
Q ss_pred EEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEEEe
Q 012874 88 LFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFV 167 (454)
Q Consensus 88 l~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i 167 (454)
+++ ..+.| ..||++.++.+|+++|+++||+|+++++......... . +.. ..
T Consensus 2 li~-~~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~------~-------------------~~~-~~ 52 (177)
T PF13439_consen 2 LIT-NIFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE------L-------------------VKI-FV 52 (177)
T ss_dssp EEE-CC-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST------E-------------------EEE---
T ss_pred EEE-EecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh------c-------------------cce-ee
Confidence 444 44455 4799999999999999999999999998855322110 0 000 00
Q ss_pred cCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHHHH
Q 012874 168 DHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLK 247 (454)
Q Consensus 168 ~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~ 247 (454)
..+.... ....+.......+.+.+++. +|| |||+|.+....+.....
T Consensus 53 ~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~------------~~D-iVh~~~~~~~~~~~~~~ 99 (177)
T PF13439_consen 53 KIPYPIR--------------------KRFLRSFFFMRRLRRLIKKE------------KPD-IVHIHGPPAFWIALLAC 99 (177)
T ss_dssp -TT-SST--------------------SS--HHHHHHHHHHHHHHHH------------T-S-EEECCTTHCCCHHHHHH
T ss_pred eeecccc--------------------cccchhHHHHHHHHHHHHHc------------CCC-eEEecccchhHHHHHhc
Confidence 0000000 00111122334455566553 799 88999877544433222
Q ss_pred HhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCHHH
Q 012874 248 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 327 (454)
Q Consensus 248 ~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~ 327 (454)
.++|+|+|+|+........ ......... ....+++...+.+|++|+||+..
T Consensus 100 ---------~~~~~v~~~H~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~ii~vS~~~ 150 (177)
T PF13439_consen 100 ---------RKVPIVYTIHGPYFERRFL-------KSKLSPYSY-------------LNFRIERKLYKKADRIIAVSEST 150 (177)
T ss_dssp ---------HCSCEEEEE-HHH--HHTT-------TTSCCCHHH-------------HHHCTTHHHHCCSSEEEESSHHH
T ss_pred ---------cCCCEEEEeCCCccccccc-------ccccchhhh-------------hhhhhhhhHHhcCCEEEEECHHH
Confidence 2789999999976310000 000000000 00111333467899999999999
Q ss_pred HHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCC
Q 012874 328 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN 363 (454)
Q Consensus 328 a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~ 363 (454)
++++.+ +|. ++.++.+||||||++.|+
T Consensus 151 ~~~l~~---~~~------~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 151 KDELIK---FGI------PPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHHHH---HT--------SS-EEE----B-CCCH-
T ss_pred HHHHHH---hCC------cccCCEEEECCccHHHcC
Confidence 999984 443 347899999999999873
No 62
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.53 E-value=4.6e-14 Score=124.67 Aligned_cols=160 Identities=23% Similarity=0.226 Sum_probs=86.4
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEEEecCcchhhhhhcCC
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~~i~~p~~~~k~w~~~ 180 (454)
||++.++.+|+++|+++||+|+|++|..+...+. ...+|++++.++.+....
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~------ 52 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE----------------------EEEDGVRVHRLPLPRRPW------ 52 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S----------------------EEETTEEEEEE--S-SSS------
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc----------------------cccCCceEEeccCCccch------
Confidence 8999999999999999999999999886543221 013577776664332100
Q ss_pred CCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCe
Q 012874 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAK 260 (454)
Q Consensus 181 ~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~p 260 (454)
.+. ..+ +...+.+++... ..+|| |||+|++.+++++.+++.. .++|
T Consensus 53 --~~~-----------~~~---~~~~~~~~l~~~----------~~~~D-vv~~~~~~~~~~~~~~~~~-------~~~p 98 (160)
T PF13579_consen 53 --PLR-----------LLR---FLRRLRRLLAAR----------RERPD-VVHAHSPTAGLVAALARRR-------RGIP 98 (160)
T ss_dssp --GGG-----------HCC---HHHHHHHHCHHC----------T---S-EEEEEHHHHHHHHHHHHHH-------HT--
T ss_pred --hhh-----------hHH---HHHHHHHHHhhh----------ccCCe-EEEecccchhHHHHHHHHc-------cCCc
Confidence 000 001 112223333111 23899 9999998777666666633 5899
Q ss_pred EEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCcc
Q 012874 261 VVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 340 (454)
Q Consensus 261 vV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~ 340 (454)
+|+|+|+..+.... .+.. .-...+++..++.||+++++|+..++.+.+ +|+
T Consensus 99 ~v~~~h~~~~~~~~------------~~~~-------------~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~---~g~- 149 (160)
T PF13579_consen 99 LVVTVHGTLFRRGS------------RWKR-------------RLYRWLERRLLRRADRVIVVSEAMRRYLRR---YGV- 149 (160)
T ss_dssp EEEE-SS-T------------------HHH-------------HHHHHHHHHHHHH-SEEEESSHHHHHHHHH---H---
T ss_pred EEEEECCCchhhcc------------chhh-------------HHHHHHHHHHHhcCCEEEECCHHHHHHHHH---hCC-
Confidence 99999985422110 0100 001234667889999999999999999884 553
Q ss_pred chhhhccCCeEEEcCC
Q 012874 341 LDNIIRKTGIKGIVNG 356 (454)
Q Consensus 341 l~~~l~~~~i~vIpNG 356 (454)
+.+++.+||||
T Consensus 150 -----~~~ri~vipnG 160 (160)
T PF13579_consen 150 -----PPDRIHVIPNG 160 (160)
T ss_dssp ------GGGEEE----
T ss_pred -----CCCcEEEeCcC
Confidence 24789999998
No 63
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.51 E-value=6.6e-13 Score=134.08 Aligned_cols=221 Identities=17% Similarity=0.080 Sum_probs=131.3
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
+|++.+.+ +||...++..|+++|.++||+|++++.......+. ....|++++
T Consensus 1 ~~~~~~~~------~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~----------------------~~~~~~~~~ 52 (350)
T cd03785 1 RILIAGGG------TGGHIFPALALAEELRERGAEVLFLGTKRGLEARL----------------------VPKAGIPLH 52 (350)
T ss_pred CEEEEecC------chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc----------------------ccccCCceE
Confidence 46666553 68888888899999999999999998764321110 011356666
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~~ 245 (454)
.++.+.+..+ ..+ .....+..+.+.+.++.+.+. +++|| |||+|.+..++.+.+
T Consensus 53 ~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~i~---------~~~pD-vI~~~~~~~~~~~~~ 106 (350)
T cd03785 53 TIPVGGLRRK-------GSL---------KKLKAPFKLLKGVLQARKILK---------KFKPD-VVVGFGGYVSGPVGL 106 (350)
T ss_pred EEEecCcCCC-------ChH---------HHHHHHHHHHHHHHHHHHHHH---------hcCCC-EEEECCCCcchHHHH
Confidence 6543221100 000 001111111222222222222 24899 899998765554444
Q ss_pred HHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccCH
Q 012874 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (454)
Q Consensus 246 l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~ 325 (454)
+... .++|++++.|+... . .+.+.....+|+|+++|+
T Consensus 107 ~a~~-------~~~p~v~~~~~~~~----------------~--------------------~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 107 AAKL-------LGIPLVIHEQNAVP----------------G--------------------LANRLLARFADRVALSFP 143 (350)
T ss_pred HHHH-------hCCCEEEEcCCCCc----------------c--------------------HHHHHHHHhhCEEEEcch
Confidence 4332 57898876554210 0 011234456899999998
Q ss_pred HHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEE
Q 012874 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 326 ~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
...+. . ...++.+|+||+|.+.+.+.. . +++++++. +.++|
T Consensus 144 ~~~~~-~-------------~~~~~~~i~n~v~~~~~~~~~----------------------~-~~~~~~~~--~~~~i 184 (350)
T cd03785 144 ETAKY-F-------------PKDKAVVTGNPVREEILALDR----------------------E-RARLGLRP--GKPTL 184 (350)
T ss_pred hhhhc-C-------------CCCcEEEECCCCchHHhhhhh----------------------h-HHhcCCCC--CCeEE
Confidence 75543 1 136799999999987664421 1 45567764 66788
Q ss_pred EEEcCCccccCHH-HHHHHHhhcccCCcEE-EEEecCCc
Q 012874 406 GFIGRLEEQKGSD-ILAAAIPHFIKENVQI-IVLVSITI 442 (454)
Q Consensus 406 lfvGRL~~qKG~d-~LieA~~~l~~~~v~l-vIvG~G~~ 442 (454)
+++|+...+|+.+ .+++|+..+.+.++++ +++|+|..
T Consensus 185 ~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~ 223 (350)
T cd03785 185 LVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL 223 (350)
T ss_pred EEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH
Confidence 8898888888775 4568888886556664 57788843
No 64
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.50 E-value=1.1e-12 Score=132.28 Aligned_cols=218 Identities=13% Similarity=0.053 Sum_probs=123.3
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~ 164 (454)
|||++++.+ +||--.....|+++|.++||+|+++++.+....+ +. ...|+++
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~--------------------~~--~~~g~~~ 52 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKR--------------------LV--PKAGIEF 52 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhc--------------------cc--ccCCCce
Confidence 788888654 2333334468999999999999999864321100 00 1146666
Q ss_pred EEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHHH
Q 012874 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (454)
Q Consensus 165 ~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~~ 244 (454)
+.++...+.. ..+.. -..+...+......+.+++++ ++|| |||+|.+..++.+.
T Consensus 53 ~~i~~~~~~~-------~~~~~------~l~~~~~~~~~~~~l~~~i~~------------~~pD-vVi~~~~~~~~~~~ 106 (348)
T TIGR01133 53 YFIPVGGLRR-------KGSFR------LIKTPLKLLKAVFQARRILKK------------FKPD-AVIGFGGYVSGPAG 106 (348)
T ss_pred EEEeccCcCC-------CChHH------HHHHHHHHHHHHHHHHHHHHh------------cCCC-EEEEcCCcccHHHH
Confidence 6554221100 00000 000001111111223333432 4899 99999876655544
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
.+... .++|+|++.|+..+ .. ..++..+.+|+++++|
T Consensus 107 ~~~~~-------~~~p~v~~~~~~~~----------------------------------~~--~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 107 LAAKL-------LGIPLFHHEQNAVP----------------------------------GL--TNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHH-------cCCCEEEECCCCCc----------------------------------cH--HHHHHHHHhCeeEECc
Confidence 44432 57788754332110 00 1233456799999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcE
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~l 404 (454)
+...+.+ +..+|+||+|...+.+.. .+++++++. +.++
T Consensus 144 ~~~~~~~-----------------~~~~i~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~~ 181 (348)
T TIGR01133 144 PGAKDHF-----------------EAVLVGNPVRQEIRSLPV-----------------------PRERFGLRE--GKPT 181 (348)
T ss_pred hhHhhcC-----------------CceEEcCCcCHHHhcccc-----------------------hhhhcCCCC--CCeE
Confidence 8654332 237899999977654321 012456663 6788
Q ss_pred EEEEcCCccccCHHH-HHHHHhhcccCCcEEEE-EecCC
Q 012874 405 IGFIGRLEEQKGSDI-LAAAIPHFIKENVQIIV-LVSIT 441 (454)
Q Consensus 405 IlfvGRL~~qKG~d~-LieA~~~l~~~~v~lvI-vG~G~ 441 (454)
|+++|+...+|+... +++|++.+.+.++++++ +|+++
T Consensus 182 i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~ 220 (348)
T TIGR01133 182 ILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND 220 (348)
T ss_pred EEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch
Confidence 999999988999654 56898887655667644 45444
No 65
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.49 E-value=5.2e-14 Score=145.63 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=76.6
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHH
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k 387 (454)
.+++..++.+|.|+++|+..++.+.+ .++ ....++.+||||+|.+.|.|.... .
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~--~~~------~~~~~v~vipngvd~~~f~~~~~~--------------~---- 217 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRR--LAP------EAAGRITAFPNGVDADFFSPDRDY--------------P---- 217 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHH--hCC------CCCCCeEEeecccchhhcCCCccc--------------c----
Confidence 45677888999999999998888763 111 123689999999999998764210 0
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHH----HHHhhccc--CCcEEEEEecCCccchH
Q 012874 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILA----AAIPHFIK--ENVQIIVLVSITIRNYS 446 (454)
Q Consensus 388 ~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~Li----eA~~~l~~--~~v~lvIvG~G~~~~~~ 446 (454)
-.++ .+.++|+|+||+.++||++.++ ++++.+.+ .+++|+|+|+|+....+
T Consensus 218 ------~~~~--~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~~~~ 274 (397)
T TIGR03087 218 ------NPYP--PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSPAVR 274 (397)
T ss_pred ------CCCC--CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChHHHH
Confidence 0112 2457899999999999999988 45555544 47999999999865433
No 66
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.49 E-value=2.8e-12 Score=138.39 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCC
Q 012874 317 SDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 396 (454)
Q Consensus 317 ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl 396 (454)
||+|+++|.... ++.. ..+. ..||||++.|.|.. + .+.++++|+
T Consensus 499 cD~VIaPS~atq-~L~~--------------~vI~-nVnGVDte~F~P~~----------------r----~~~~r~lgi 542 (794)
T PLN02501 499 CHKVLRLSAATQ-DLPK--------------SVIC-NVHGVNPKFLKIGE----------------K----VAEERELGQ 542 (794)
T ss_pred CCEEEcCCHHHH-Hhcc--------------ccee-ecccccccccCCcc----------------h----hHHHHhcCC
Confidence 899999996654 4421 1222 23799999998863 1 111245676
Q ss_pred CCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCccc
Q 012874 397 PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIRN 444 (454)
Q Consensus 397 ~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~~ 444 (454)
+. ..+.++|+|||.++||++.|++|++.+.+. +++|+|+|+|+.+.
T Consensus 543 ~~--~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~re 590 (794)
T PLN02501 543 QA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAH 590 (794)
T ss_pred cc--ccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHH
Confidence 64 234589999999999999999999988653 79999999998653
No 67
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=2.2e-12 Score=137.37 Aligned_cols=156 Identities=7% Similarity=0.015 Sum_probs=99.7
Q ss_pred CCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEE-EeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC-IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~T-iH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
+|| |||+|+..+.+.+..+... .++|++++ .|... ... ..+... .
T Consensus 280 rpD-IVHt~~~~a~l~g~laA~l-------agvpviv~~~h~~~-~~~-----------~~r~~~--------------~ 325 (578)
T PRK15490 280 KLD-YLSVWQDGACLMIALAALI-------AGVPRIQLGLRGLP-PVV-----------RKRLFK--------------P 325 (578)
T ss_pred CCC-EEEEcCcccHHHHHHHHHh-------cCCCEEEEeecccC-Ccc-----------hhhHHH--------------H
Confidence 899 9999987766666665553 58888654 66521 100 000000 0
Q ss_pred hHHHHHH---HhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccc
Q 012874 306 KINWMKA---GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382 (454)
Q Consensus 306 ~~~~~k~---~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~ 382 (454)
.+.+... .+..+| ++++|....+++.+ .++. +.+++.+||||||++.|.|..+.
T Consensus 326 e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~--~lgi------p~~KI~VIyNGVD~~rf~p~~~~-------------- 382 (578)
T PRK15490 326 EYEPLYQALAVVPGVD-FMSNNHCVTRHYAD--WLKL------EAKHFQVVYNGVLPPSTEPSSEV-------------- 382 (578)
T ss_pred HHHHhhhhceeEecch-hhhccHHHHHHHHH--HhCC------CHHHEEEEeCCcchhhcCccchh--------------
Confidence 0111111 123445 77888887787763 3343 34789999999999999875311
Q ss_pred hHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 383 k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
....++.+ ..+++. +.++|+++||+.++||.+.+++|+.++.+ .+++|+|+|+|+.+
T Consensus 383 ~~~~r~~~--~~~l~~--~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~ 441 (578)
T PRK15490 383 PHKIWQQF--TQKTQD--ADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLR 441 (578)
T ss_pred hHHHHHHh--hhccCC--CCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhH
Confidence 00111111 234442 56799999999999999999999988766 37999999999754
No 68
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.45 E-value=4.2e-13 Score=142.57 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=109.9
Q ss_pred CCCEEEEeCCCc-hhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 227 GEDVVFVANDWH-TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 227 ~pD~VIH~h~w~-ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
++| |+|+|+.. +++++++++.. .++|+|+|.|++....+.. ++........... ..+..
T Consensus 173 ~~d-viH~~s~~~~g~~~~~~~~~-------~~~p~I~t~Hg~~~~e~~~--~~~~~~~~~~~~~----------~~~~~ 232 (475)
T cd03813 173 KAD-VYHAVSTGYAGLLGALAKAR-------RGTPFLLTEHGIYTRERKI--ELLQADWEMSYFR----------RLWIR 232 (475)
T ss_pred CCC-EEeccCcchHHHHHHHHHHH-------hCCCEEEecCCccHHHHHH--HHHhcccchHHHH----------HHHHH
Confidence 789 99999743 45555555543 5899999999974321100 0000000000000 00000
Q ss_pred -hHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchH
Q 012874 306 -KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (454)
Q Consensus 306 -~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~ 384 (454)
...+++..++.||.|+++|+...+.+.+ +|. ++.++.+||||+|.+.|.|....
T Consensus 233 ~~~~l~~~~~~~ad~Ii~~s~~~~~~~~~---~g~------~~~ki~vIpNgid~~~f~~~~~~---------------- 287 (475)
T cd03813 233 FFESLGRLAYQAADRITTLYEGNRERQIE---DGA------DPEKIRVIPNGIDPERFAPARRA---------------- 287 (475)
T ss_pred HHHHHHHHHHHhCCEEEecCHHHHHHHHH---cCC------CHHHeEEeCCCcCHHHcCCcccc----------------
Confidence 1234566788999999999987776653 443 23689999999999988764210
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCc--cchHHHHHhh
Q 012874 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITI--RNYSTLYTFI 452 (454)
Q Consensus 385 ~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~--~~~~~l~~~~ 452 (454)
.. ..+.++|+|+||+.+.||++.|++|+..+.+ .+++++|+|+|++ .+.+++.+++
T Consensus 288 ----------~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li 347 (475)
T cd03813 288 ----------RP--EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELV 347 (475)
T ss_pred ----------cc--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHH
Confidence 01 1256899999999999999999999998876 3899999999843 3455555554
No 69
>PLN02949 transferase, transferring glycosyl groups
Probab=99.42 E-value=1.9e-11 Score=129.52 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHH
Q 012874 310 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 389 (454)
Q Consensus 310 ~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~ 389 (454)
++.....||.|+++|+..++.+.+ .++. ..++.+|+||+|.+.+.+..
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~l~~--~~~~-------~~~i~vvyp~vd~~~~~~~~----------------------- 261 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSHIEA--LWRI-------PERIKRVYPPCDTSGLQALP----------------------- 261 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHHHHH--HcCC-------CCCeEEEcCCCCHHHcccCC-----------------------
Confidence 345567899999999998888864 2221 24789999999987653210
Q ss_pred HHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc------CCcEEEEEecCCc----cchHHHHHhh
Q 012874 390 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLVSITI----RNYSTLYTFI 452 (454)
Q Consensus 390 lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~------~~v~lvIvG~G~~----~~~~~l~~~~ 452 (454)
.....+.+.|+++||++++||++.+|+|++++.+ .+++|+|+|+|.. .+..+|.+.+
T Consensus 262 ------~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la 328 (463)
T PLN02949 262 ------LERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRA 328 (463)
T ss_pred ------ccccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHH
Confidence 0001245789999999999999999999998653 3799999999843 2334555544
No 70
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.32 E-value=2.8e-11 Score=122.37 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=71.3
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHH
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k 387 (454)
.+++..++.+|.++++|+..++.+.+ .++ .+..+|+||+|.+.|.+..
T Consensus 145 ~~~~~~~~~~d~ii~~S~~~~~~~~~--~~~---------~~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 145 IWDRRSAARVDYFIANSRFVARRIKK--YYG---------RDATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHHhcCCCEEEECCHHHHHHHHH--HhC---------CCcEEECCCCCHhhcCcCC---------------------
Confidence 34556778999999999999988864 222 3468999999998876531
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 388 ~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
...+.++|+||+.++||++.|++|+..+. ++|+|+|+|+..
T Consensus 193 ------------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~~ 233 (351)
T cd03804 193 ------------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPEL 233 (351)
T ss_pred ------------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChhH
Confidence 02457899999999999999999998873 899999999764
No 71
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.30 E-value=2.7e-11 Score=128.61 Aligned_cols=287 Identities=21% Similarity=0.244 Sum_probs=146.7
Q ss_pred EecccCCCCCCCcHhHHHhhhhHHHHHC-CCeEEEEEecCCcccc----c--CCcceEEEEEeC-CeeeEEEEEEEe--e
Q 012874 90 VGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRYDQYKD----A--WDTDVVIELKVG-DKIEKVRFFHCH--K 159 (454)
Q Consensus 90 vs~e~~P~~~~GGlg~~v~~La~aL~~~-GheV~Vi~p~y~~~~~----~--~d~~~~~~v~~~-~~~~~v~~~~~~--~ 159 (454)
+++|+.- ++||+-+++..-|+.+++. |.+..+|.|..++... . .+... +.-.+. -+.+.+++.... .
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~-l~~~~~~~~~~Gl~v~~GRWlI 78 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPL-LKDALESMREEGLKVRYGRWLI 78 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGG-HHHHHHHHHHTT-EEEEEEESS
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHH-HHHHHHHHHhCCCeEEEeceeE
Confidence 5788876 8999999999999999875 9999999997654210 0 00000 000000 000111222222 3
Q ss_pred CCceEEE-ecCc-------chhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEE
Q 012874 160 RGVDRVF-VDHP-------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVV 231 (454)
Q Consensus 160 ~GV~~~~-i~~p-------~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~V 231 (454)
.|.+.+. +|.. .+...+|...| +=++....+|. ...-|.+.+..+++.+..... .++.||
T Consensus 79 ~G~P~vIL~D~~s~~~~ldeik~~lW~~~g--IdS~~~~~dyn-ea~~Fgyava~fi~~f~~~~~---------~~~~Vi 146 (633)
T PF05693_consen 79 PGRPIVILFDFGSFFWKLDEIKGELWELFG--IDSPHGDGDYN-EAVMFGYAVAWFIEEFYKFYE---------EKPKVI 146 (633)
T ss_dssp TT--EEEEEEGGGGGGGHHHHHHHHHHHH-------TT-HHHH-HHHHHHHHHHHHHHHHHHH-S----------SEEEE
T ss_pred CCcCeEEEEeCchHHHHHHHHHHHHHHHcC--CCCCCCCcchh-HHHHHHHHHHHHHHHHHHhhc---------CCCcEE
Confidence 5666554 4532 23344563322 11111112222 223344444333333333221 157789
Q ss_pred EEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCC--CccccccC-CCC----cccccccccccCCCCCccc
Q 012874 232 FVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRF--AFEDFGLL-NLP----AQFKSSFDFIDGYNKPVRG 304 (454)
Q Consensus 232 IH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~--~~~~~~~l-~lp----~~~~~~~~~~~~~~k~~~~ 304 (454)
.|+|+|++++..++++... ..+..|||.|.... ||. ... .+.+ +|+ ++.... ..-.
T Consensus 147 aHfHEWmaG~gll~lr~~~------~~VaTvFTTHAT~l-GR~l~~~~-~~~Y~~L~~~~~d~eA~~---------~~i~ 209 (633)
T PF05693_consen 147 AHFHEWMAGVGLLYLRKRK------PDVATVFTTHATLL-GRYLAANN-KDFYNNLDKFNGDQEAGE---------RNIY 209 (633)
T ss_dssp EEEESGGGTTHHHHHHHTT-------SCEEEEEESS-HH-HHHHTTTS-S-TTTSGTTS-HHHHHHH---------TT-H
T ss_pred EEechHhHhHHHHHHhccC------CCeeEEEEecccch-hhHhhcCC-CcHHHHhhccCccccccC---------ccch
Confidence 9999999998888887642 57899999998742 321 110 0001 111 000000 0012
Q ss_pred chHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchH
Q 012874 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (454)
Q Consensus 305 ~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~ 384 (454)
.+..+++++...||.++|||+-.+.|... +|.+..=.++|||+|.+.|.... ++..-+.
T Consensus 210 ~k~~iEraaA~~AdvFTTVSeITa~Ea~~----------LL~r~pDvV~pNGl~v~~~~~~~-----------efqnl~~ 268 (633)
T PF05693_consen 210 HKHSIERAAAHYADVFTTVSEITAKEAEH----------LLKRKPDVVTPNGLNVDKFPALH-----------EFQNLHA 268 (633)
T ss_dssp HHHHHHHHHHHHSSEEEESSHHHHHHHHH----------HHSS--SEE----B-GGGTSSTT-----------HHHHHHH
T ss_pred HHHHHHHHHHHhcCeeeehhhhHHHHHHH----------HhCCCCCEEcCCCccccccccch-----------HHHHHHH
Confidence 35678999999999999999998888652 23334457889999998764332 1211233
Q ss_pred HHHHHHHH----Hh-C-CCCCC-CCcEEEEEcCCcc-ccCHHHHHHHHhhccc
Q 012874 385 LLKEALQA----EV-G-LPVDR-NIPVIGFIGRLEE-QKGSDILAAAIPHFIK 429 (454)
Q Consensus 385 ~~k~~lr~----~~-G-l~~~~-~~~lIlfvGRL~~-qKG~d~LieA~~~l~~ 429 (454)
..|+.+++ .+ | +.-|. +..+|...||.+- .||+|++|||+.+|..
T Consensus 269 ~~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~ 321 (633)
T PF05693_consen 269 KAKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNH 321 (633)
T ss_dssp HHHHHHHHHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHH
Confidence 44444443 32 3 22222 3445777799985 9999999999999853
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.29 E-value=3.3e-11 Score=127.80 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=102.5
Q ss_pred CCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccch
Q 012874 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~ 306 (454)
..| +||+||+|..++|.+++... .+.|+++.+|...+.. +.+.. +|.
T Consensus 131 ~~d-~iwihDyhl~llp~~lr~~~------~~~~i~~f~HipfP~~----e~~~~--lp~-------------------- 177 (460)
T cd03788 131 PGD-LVWVHDYHLLLLPQMLRERG------PDARIGFFLHIPFPSS----EIFRC--LPW-------------------- 177 (460)
T ss_pred CCC-EEEEeChhhhHHHHHHHhhC------CCCeEEEEEeCCCCCh----HHHhh--CCC--------------------
Confidence 457 99999999999998887642 5689999999753211 11111 111
Q ss_pred HHHHHHHhhhCCceeccCHHHHHHHHcCC--CCCcc------chhhhccCCeEEEcCCCcCCCCCCCcccccccccCccc
Q 012874 307 INWMKAGILESDMVLTVSPHYAQELVSGE--DKGVE------LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (454)
Q Consensus 307 ~~~~k~~i~~ad~VitVS~~~a~~l~~~~--~~g~~------l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~ 378 (454)
...+-.++..+|.|..-+..+++...+.- ..+.. +...-+..++.+||||||.+.|.+...
T Consensus 178 ~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~----------- 246 (460)
T cd03788 178 REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAA----------- 246 (460)
T ss_pred hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhc-----------
Confidence 11122455567777777766655433200 00000 000012357999999999999876421
Q ss_pred cccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC
Q 012874 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI 440 (454)
Q Consensus 379 ~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G 440 (454)
.+..++.+++..+... +.++|+++|||.+.||++.+++|++.+++. +++|+++|.+
T Consensus 247 ----~~~~~~~~~~~~~~~~--~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~ 308 (460)
T cd03788 247 ----SPEVQERAAELRERLG--GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVP 308 (460)
T ss_pred ----CchhHHHHHHHHHhcC--CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccC
Confidence 1222333334344443 678999999999999999999999988763 2678888754
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.25 E-value=5.2e-10 Score=115.01 Aligned_cols=240 Identities=11% Similarity=0.040 Sum_probs=133.7
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCc
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV 162 (454)
+.|||++++..+ .+|-......|+++|.++||+|.++++.+....+..+. + . .
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~-------~------~---------~ 55 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITE-------I------T---------K 55 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHH-------H------H---------H
Confidence 368999999864 45999999999999999999988888776432211000 0 0 0
Q ss_pred eEE--Eec-CcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHH----HHHHHHHhhhhcccCCCCCCCCCCCCEEEEeC
Q 012874 163 DRV--FVD-HPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLL----CQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235 (454)
Q Consensus 163 ~~~--~i~-~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~----~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h 235 (454)
..| .+. .|..+.. .|..... .+... .+.++ ...+.++++. ++|| +||+|
T Consensus 56 ~~y~~~~~~~~~~~~~--------~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~l~~------------~~pD-~Vi~~ 111 (380)
T PRK13609 56 YLYLKSYTIGKELYRL--------FYYGVEK-IYDKK--IFSWYANFGRKRLKLLLQA------------EKPD-IVINT 111 (380)
T ss_pred HHHHHHHHHhHHHHHH--------HHhccCc-ccchH--HHHHHHHHHHHHHHHHHHH------------hCcC-EEEEc
Confidence 000 000 1221111 1110000 01111 12122 2334444443 4899 89997
Q ss_pred CCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhh
Q 012874 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 315 (454)
Q Consensus 236 ~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~ 315 (454)
.+... ++.+.+.. ..++|++.++++... .. ++..+
T Consensus 112 ~~~~~-~~~~~~~~------~~~ip~~~~~td~~~--------------~~------------------------~~~~~ 146 (380)
T PRK13609 112 FPIIA-VPELKKQT------GISIPTYNVLTDFCL--------------HK------------------------IWVHR 146 (380)
T ss_pred ChHHH-HHHHHHhc------CCCCCeEEEeCCCCC--------------Cc------------------------ccccC
Confidence 54332 33322221 146898755544210 00 01235
Q ss_pred hCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhC
Q 012874 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (454)
Q Consensus 316 ~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~G 395 (454)
++|.++++|+...+.+.+ +|++ +.++.++.|.++. .|.+.. .+..+++++|
T Consensus 147 ~ad~i~~~s~~~~~~l~~---~gi~------~~ki~v~G~p~~~-~f~~~~-------------------~~~~~~~~~~ 197 (380)
T PRK13609 147 EVDRYFVATDHVKKVLVD---IGVP------PEQVVETGIPIRS-SFELKI-------------------NPDIIYNKYQ 197 (380)
T ss_pred CCCEEEECCHHHHHHHHH---cCCC------hhHEEEECcccCh-HHcCcC-------------------CHHHHHHHcC
Confidence 789999999999888874 4432 3567776555442 232211 0234677889
Q ss_pred CCCCCCCc-EEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHHh
Q 012874 396 LPVDRNIP-VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTF 451 (454)
Q Consensus 396 l~~~~~~~-lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~~ 451 (454)
++. +.+ ++++.|++...|+++.+++++... .+++++++|.+......++.+.
T Consensus 198 l~~--~~~~il~~~G~~~~~k~~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~ 250 (380)
T PRK13609 198 LCP--NKKILLIMAGAHGVLGNVKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDL 250 (380)
T ss_pred CCC--CCcEEEEEcCCCCCCcCHHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHH
Confidence 875 445 456679999999999999998653 4789988754332233444433
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.21 E-value=1.7e-10 Score=122.05 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=112.7
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|.+||+|-.++|.+++... .+.++.|.+|-.. |.. +.+.++.+ .
T Consensus 128 ~d-~vwvhDYhl~l~p~~lr~~~------~~~~igfFlHipf-----P~~---------e~f~~lp~------------r 174 (456)
T TIGR02400 128 GD-IVWVHDYHLMLLPAMLRELG------VQNKIGFFLHIPF-----PSS---------EIYRTLPW------------R 174 (456)
T ss_pred CC-EEEEecchhhHHHHHHHhhC------CCCeEEEEEeCCC-----CCh---------HHHhhCCc------------H
Confidence 47 99999999999999998752 5689999999542 211 12221111 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCCccch--h---hhccCCeEEEcCCCcCCCCCCCcccccccccCccccc
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKGVELD--N---IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 380 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~l~--~---~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~ 380 (454)
..+-.++..||.|-.-++.+++...+. ...|.+.+ . --+..++.+||||||++.|.|....
T Consensus 175 ~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~------------ 242 (456)
T TIGR02400 175 RELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKK------------ 242 (456)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcC------------
Confidence 223457889999999999988875531 01121110 0 0134579999999999999764210
Q ss_pred cchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEec---CCccchHHHHHh
Q 012874 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVS---ITIRNYSTLYTF 451 (454)
Q Consensus 381 ~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~---G~~~~~~~l~~~ 451 (454)
.......+.+|++++ +.++|+++|||.+.||++.+++|+++++++ ++.|+++|. |...++.++...
T Consensus 243 ~~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~ 317 (456)
T TIGR02400 243 PSVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQ 317 (456)
T ss_pred hhHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHH
Confidence 001111234566653 568999999999999999999999998753 356777752 222344555444
Q ss_pred h
Q 012874 452 I 452 (454)
Q Consensus 452 ~ 452 (454)
|
T Consensus 318 i 318 (456)
T TIGR02400 318 V 318 (456)
T ss_pred H
Confidence 4
No 75
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.15 E-value=1.8e-09 Score=100.51 Aligned_cols=182 Identities=18% Similarity=0.212 Sum_probs=115.9
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++|++--.| ...||.|+++.+|+..|+++||+|+|.|......... ....|++++
T Consensus 3 kIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~----------------------~~y~gv~l~ 59 (185)
T PF09314_consen 3 KIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE----------------------FEYNGVRLV 59 (185)
T ss_pred eEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC----------------------cccCCeEEE
Confidence 89999998778 4789999999999999999999999999753221110 124788888
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCc-hhHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~-ta~~~~ 244 (454)
.++.|.. | . ...+.+-..++.++++....+ ..+.| |||++..- .+++..
T Consensus 60 ~i~~~~~--------g--~------------~~si~yd~~sl~~al~~~~~~-------~~~~~-ii~ilg~~~g~~~~~ 109 (185)
T PF09314_consen 60 YIPAPKN--------G--S------------AESIIYDFLSLLHALRFIKQD-------KIKYD-IILILGYGIGPFFLP 109 (185)
T ss_pred EeCCCCC--------C--c------------hHHHHHHHHHHHHHHHHHhhc-------cccCC-EEEEEcCCccHHHHH
Confidence 7765421 0 0 111222223334444221100 23689 89999766 344444
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
+++... ..+.|+++++|++++... .+ +.+.+. -...-++.+.+.||.+|+.|
T Consensus 110 ~~r~~~-----~~g~~v~vN~DGlEWkR~----KW---~~~~k~----------------~lk~~E~~avk~ad~lIaDs 161 (185)
T PF09314_consen 110 FLRKLR-----KKGGKVVVNMDGLEWKRA----KW---GRPAKK----------------YLKFSEKLAVKYADRLIADS 161 (185)
T ss_pred HHHhhh-----hcCCcEEECCCcchhhhh----hc---CHHHHH----------------HHHHHHHHHHHhCCEEEEcC
Confidence 444431 146799999999865321 00 111110 01123567889999999999
Q ss_pred HHHHHHHHcCCCCCccchhhhccCCeEEEcCCCc
Q 012874 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMD 358 (454)
Q Consensus 325 ~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD 358 (454)
+.+++.+.+ .|+ ..+.+.|++|.|
T Consensus 162 ~~I~~y~~~--~y~--------~~~s~~IaYGad 185 (185)
T PF09314_consen 162 KGIQDYIKE--RYG--------RKKSTFIAYGAD 185 (185)
T ss_pred HHHHHHHHH--HcC--------CCCcEEecCCCC
Confidence 999999884 454 256899999987
No 76
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.06 E-value=1.8e-09 Score=115.69 Aligned_cols=94 Identities=18% Similarity=0.005 Sum_probs=69.0
Q ss_pred HhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHH
Q 012874 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (454)
Q Consensus 313 ~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~ 392 (454)
.+..+|.+|++|+..++.+.+ .++.. .....++.+||||++...+.|..
T Consensus 267 ~~~~~D~iI~~S~~~~~~l~~--~~~~~---~~~~~ki~viP~g~~~~~~~~~~-------------------------- 315 (500)
T TIGR02918 267 NADYIDFFITATDIQNQILKN--QFKKY---YNIEPRIYTIPVGSLDELQYPEQ-------------------------- 315 (500)
T ss_pred chhhCCEEEECCHHHHHHHHH--Hhhhh---cCCCCcEEEEcCCCcccccCccc--------------------------
Confidence 356789999999998888763 22100 01136799999998755433210
Q ss_pred HhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 393 ~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
.++..+|+|+|||.++||++.|++|+.++.+ .+++|+|+|+|+.+
T Consensus 316 ------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~ 362 (500)
T TIGR02918 316 ------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK 362 (500)
T ss_pred ------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH
Confidence 0134579999999999999999999999876 38999999999863
No 77
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.01 E-value=5.1e-09 Score=109.21 Aligned_cols=145 Identities=16% Similarity=0.066 Sum_probs=97.0
Q ss_pred CCCCEEEEeCCCch-hHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCccc
Q 012874 226 YGEDVVFVANDWHT-SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (454)
Q Consensus 226 ~~pD~VIH~h~w~t-a~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~ 304 (454)
+++| |+|++..+. ++....++..+ ...++|.|.|+.+.... ... .
T Consensus 126 ~~~~-v~~sy~~~~~~~~~~~l~~~~------~~~~~i~~~Hg~d~~~~-------------~~~------~-------- 171 (407)
T cd04946 126 GQGT-VFYSYWLHETAYALALLKKEY------LRKRVISRAHGYDLYED-------------RYP------S-------- 171 (407)
T ss_pred cCce-EEEEecCchHHHHHHHHHHhc------CCceEEEEeccchhhhh-------------hcc------c--------
Confidence 4678 888874332 33333344432 33469999998642110 000 0
Q ss_pred chHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchH
Q 012874 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (454)
Q Consensus 305 ~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~ 384 (454)
....+.+..+..+|.|+++|+...+.+.+ .++.. ..++.+|+||+|.+.+.+..
T Consensus 172 ~~~~~~~~~~~~~d~ii~~S~~~~~~l~~--~~~~~------~~ki~vi~~gv~~~~~~~~~------------------ 225 (407)
T cd04946 172 GYIPLRRYLLSSLDAVFPCSEQGRNYLQK--RYPAY------KEKIKVSYLGVSDPGIISKP------------------ 225 (407)
T ss_pred cchHHHHHHHhcCCEEEECCHHHHHHHHH--HCCCc------cccEEEEECCcccccccCCC------------------
Confidence 01233445678899999999998888874 34321 36889999999987654320
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC----CcEEEEEecCCcc
Q 012874 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE----NVQIIVLVSITIR 443 (454)
Q Consensus 385 ~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~----~v~lvIvG~G~~~ 443 (454)
. ..+.+.|+++||+.++||++.|++|+..+.+. +++++++|+|+..
T Consensus 226 -----------~--~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~ 275 (407)
T cd04946 226 -----------S--KDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLE 275 (407)
T ss_pred -----------C--CCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHH
Confidence 0 11457899999999999999999999998763 5778899999753
No 78
>PHA01630 putative group 1 glycosyl transferase
Probab=98.97 E-value=5.4e-09 Score=106.35 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=72.6
Q ss_pred HHHHH-hhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHH
Q 012874 309 WMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (454)
Q Consensus 309 ~~k~~-i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k 387 (454)
++... ...+|.|+++|+...+.+.+ .|.+. ..++.+||||+|.+.|.|....
T Consensus 86 ~~~~~~~~~ad~ii~~S~~~~~~l~~---~g~~~-----~~~i~vIpNGVd~~~f~~~~~~------------------- 138 (331)
T PHA01630 86 ALYFFRNQPVDEIVVPSQWSKNAFYT---SGLKI-----PQPIYVIPHNLNPRMFEYKPKE------------------- 138 (331)
T ss_pred HHHHHhhccCCEEEECCHHHHHHHHH---cCCCC-----CCCEEEECCCCCHHHcCCCccc-------------------
Confidence 34444 56799999999999988864 23211 2579999999999988764200
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCc
Q 012874 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 388 ~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~ 442 (454)
..+..+++++||+.++||+|.|++|++.+.+ .+++++|+|++..
T Consensus 139 -----------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~ 184 (331)
T PHA01630 139 -----------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML 184 (331)
T ss_pred -----------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc
Confidence 0134577788899999999999999999876 3799999997754
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.95 E-value=2e-08 Score=103.77 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=73.8
Q ss_pred hhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHh
Q 012874 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (454)
Q Consensus 315 ~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~ 394 (454)
..+|.++++|+..++++.+ +|++ +.++.+++|++|.+.+.+.. .++++++++
T Consensus 149 ~~~d~~~~~s~~~~~~l~~---~g~~------~~ki~v~g~~v~~~f~~~~~-------------------~~~~~r~~~ 200 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALK---RGLE------PSQIRVYGLPIRPSFARAVR-------------------PKDELRREL 200 (382)
T ss_pred CCCCEEEECCHHHHHHHHH---cCCC------HHHEEEECcccCHhhccCCC-------------------CHHHHHHHc
Confidence 4689999999999888874 4532 36899999999865433221 135578899
Q ss_pred CCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcc------cCCcE-EEEEecCC
Q 012874 395 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI------KENVQ-IIVLVSIT 441 (454)
Q Consensus 395 Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~------~~~v~-lvIvG~G~ 441 (454)
|++. +.++|+++||....|++..+++++..+. ..+.+ ++++|+++
T Consensus 201 gl~~--~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~ 252 (382)
T PLN02605 201 GMDE--DLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK 252 (382)
T ss_pred CCCC--CCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH
Confidence 9985 6799999999999999999999998754 24566 56778764
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.93 E-value=9.4e-09 Score=114.95 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|.+||+|..++|.+++... .+.++-|.+|-..++. +.+.. +|. .
T Consensus 134 ~d-~vwvhDYhl~l~p~~lr~~~------~~~~igfFlH~pfP~~----~~f~~--lp~--------------------~ 180 (726)
T PRK14501 134 GD-VVWVHDYQLMLLPAMLRERL------PDARIGFFLHIPFPSF----EVFRL--LPW--------------------R 180 (726)
T ss_pred CC-EEEEeCchhhhHHHHHHhhC------CCCcEEEEeeCCCCCh----HHHhh--CCC--------------------h
Confidence 47 99999999999999998752 5789999999864332 11111 120 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCCcc-----chhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccc
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKGVE-----LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 380 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~-----l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~ 380 (454)
..+-.++..+|.|-.-+..+++...+. ...+.. +..--+..++.+||||||++.|.+.... .
T Consensus 181 ~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~--------~--- 249 (726)
T PRK14501 181 EEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQD--------P--- 249 (726)
T ss_pred HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcC--------c---
Confidence 122346667777777777766654321 001100 0000012468999999999999764210 0
Q ss_pred cchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC
Q 012874 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI 440 (454)
Q Consensus 381 ~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G 440 (454)
......+.+|+.+ + +.++|+++|||+++||++.+++|++.+++. +++|+++|.+
T Consensus 250 -~~~~~~~~lr~~~--~---~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~ 309 (726)
T PRK14501 250 -EVQEEIRRLRQDL--R---GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVP 309 (726)
T ss_pred -hHHHHHHHHHHHc--C---CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecC
Confidence 0011223344443 2 567999999999999999999999998763 3789888743
No 81
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.92 E-value=3.3e-08 Score=103.33 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=75.6
Q ss_pred HHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHH
Q 012874 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (454)
Q Consensus 309 ~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~ 388 (454)
+++..+..+|.|+++|+..++.+.+ +|+ +++ +.+++|+ +.+.+.+.. ....++
T Consensus 171 ~~r~~~~~~d~ii~~S~~~~~~l~~---~g~------~~~-i~vi~n~-~~d~~~~~~----------------~~~~~~ 223 (425)
T PRK05749 171 FYRLLFKNIDLVLAQSEEDAERFLA---LGA------KNE-VTVTGNL-KFDIEVPPE----------------LAARAA 223 (425)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH---cCC------CCC-cEecccc-cccCCCChh----------------hHHHHH
Confidence 4556677899999999999998874 443 224 8888884 333332211 111234
Q ss_pred HHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCccchHHHHHhh
Q 012874 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIRNYSTLYTFI 452 (454)
Q Consensus 389 ~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~~~~~l~~~~ 452 (454)
.++++++ + +.++++++|+. +|+.+.|++|++++.+ .+++|+|+|+|+++ ..++.+.+
T Consensus 224 ~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r-~~~l~~~~ 282 (425)
T PRK05749 224 TLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPER-FKEVEELL 282 (425)
T ss_pred HHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhh-HHHHHHHH
Confidence 5677776 3 56888999974 6889999999998865 48999999999854 23444443
No 82
>PHA01633 putative glycosyl transferase group 1
Probab=98.92 E-value=5.3e-08 Score=99.09 Aligned_cols=99 Identities=13% Similarity=0.247 Sum_probs=72.3
Q ss_pred HHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHH
Q 012874 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (454)
Q Consensus 312 ~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr 391 (454)
..+.+.+++|++|+..++++.+ .|+. ..+ .|+||+|++.|.|..+ ....++
T Consensus 88 ~~m~~~~~vIavS~~t~~~L~~---~G~~-------~~i-~I~~GVD~~~f~p~~~------------------~~~~~r 138 (335)
T PHA01633 88 KYLLQDVKFIPNSKFSAENLQE---VGLQ-------VDL-PVFHGINFKIVENAEK------------------LVPQLK 138 (335)
T ss_pred HHHhcCCEEEeCCHHHHHHHHH---hCCC-------Cce-eeeCCCChhhcCccch------------------hhHHHH
Confidence 3455678999999999999874 3432 123 4889999999987531 123355
Q ss_pred HHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC
Q 012874 392 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI 440 (454)
Q Consensus 392 ~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G 440 (454)
++++... ++.++|+++|||.++||++.|++|++++.+. +++++++|.+
T Consensus 139 ~~~~~~~-~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~ 192 (335)
T PHA01633 139 QKLDKDF-PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK 192 (335)
T ss_pred HHhCcCC-CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH
Confidence 5665432 2567999999999999999999999998653 3588888753
No 83
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.90 E-value=1.4e-08 Score=114.25 Aligned_cols=175 Identities=19% Similarity=0.236 Sum_probs=106.3
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|-+||+|-.++|.+++... .+.++.|.+|...+ .. +.+.++.+ .
T Consensus 148 ~d-~vWvhDYhL~llp~~lR~~~------~~~~igfFlHiPFP-----s~---------e~fr~lp~------------r 194 (797)
T PLN03063 148 GD-VVWCHDYHLMFLPQYLKEYN------NKMKVGWFLHTPFP-----SS---------EIYKTLPS------------R 194 (797)
T ss_pred CC-EEEEecchhhhHHHHHHHhC------CCCcEEEEecCCCC-----CH---------HHHhhCCC------------H
Confidence 37 99999999999999998753 67899999998632 11 11111110 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCCcc-----chhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccc
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKGVE-----LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 380 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~-----l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~ 380 (454)
..+-.++..||.|-+-+..|++...+. .-.|.+ +...-+..++.+||||||++.|.+.... .
T Consensus 195 ~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~--------~--- 263 (797)
T PLN03063 195 SELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL--------P--- 263 (797)
T ss_pred HHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC--------h---
Confidence 122346677888888887777765430 000110 1000123579999999999988654210 0
Q ss_pred cchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC--C----cEEEEEec---CCccchHHHHHh
Q 012874 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--N----VQIIVLVS---ITIRNYSTLYTF 451 (454)
Q Consensus 381 ~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~--~----v~lvIvG~---G~~~~~~~l~~~ 451 (454)
......+.+++.++ +.++|+++|||++.||++.+++|++.+++. + +.|+.++. +...+++++.+.
T Consensus 264 -~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~ 337 (797)
T PLN03063 264 -EVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQ 337 (797)
T ss_pred -hHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHH
Confidence 00111223444443 467999999999999999999999998763 3 34444432 222345555555
Q ss_pred h
Q 012874 452 I 452 (454)
Q Consensus 452 ~ 452 (454)
|
T Consensus 338 v 338 (797)
T PLN03063 338 V 338 (797)
T ss_pred H
Confidence 4
No 84
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.85 E-value=3.5e-08 Score=104.85 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=114.4
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|-+||+|..++|.+++... .+.++-|-+|... |.. +.+.++.+ .
T Consensus 133 ~d-~vWVhDYhL~llp~~LR~~~------~~~~IgfFlHiPF-----Ps~---------eifr~LP~------------r 179 (487)
T TIGR02398 133 GA-TVWVHDYNLWLVPGYIRQLR------PDLKIAFFHHTPF-----PSA---------DVFNILPW------------R 179 (487)
T ss_pred CC-EEEEecchhhHHHHHHHHhC------CCCeEEEEeeCCC-----CCh---------HHHhhCCc------------h
Confidence 46 99999999999999998752 5789999999753 211 11111110 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCCccch--------------------------hhhccCCeEEEcCCCcC
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKGVELD--------------------------NIIRKTGIKGIVNGMDV 359 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~l~--------------------------~~l~~~~i~vIpNGiD~ 359 (454)
..+-.++..||.|=.-+..+++...+. ...|.+.. ---+...+.++|.|||+
T Consensus 180 ~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~ 259 (487)
T TIGR02398 180 EQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDP 259 (487)
T ss_pred HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecH
Confidence 123346778888888888877754321 01111100 00122458999999999
Q ss_pred CCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcE
Q 012874 360 QEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQ 433 (454)
Q Consensus 360 ~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~ 433 (454)
+.|.+.... +.-.+..+.+|+++| +.++|++++||.+.||++..++|++++++. ++.
T Consensus 260 ~~f~~~~~~------------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~ 322 (487)
T TIGR02398 260 ERIRSALAA------------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVT 322 (487)
T ss_pred HHHHHHhcC------------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceE
Confidence 998654210 011233456777777 468999999999999999999999999763 479
Q ss_pred EEEEecCC---ccchHHHHHhh
Q 012874 434 IIVLVSIT---IRNYSTLYTFI 452 (454)
Q Consensus 434 lvIvG~G~---~~~~~~l~~~~ 452 (454)
||++|.+. -..|+++.+.|
T Consensus 323 Lvqi~~psr~~v~~y~~l~~~v 344 (487)
T TIGR02398 323 LVTACVPAASGMTIYDELQGQI 344 (487)
T ss_pred EEEEeCCCcccchHHHHHHHHH
Confidence 99998763 23455555554
No 85
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.83 E-value=3.6e-08 Score=100.40 Aligned_cols=92 Identities=20% Similarity=0.091 Sum_probs=71.2
Q ss_pred HhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHH
Q 012874 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (454)
Q Consensus 313 ~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~ 392 (454)
.+..+|.++++|+..++.+.+ .++. ..++.+||||+|...+.+..
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~--~~~~-------~~~v~~ip~g~~~~~~~~~~-------------------------- 198 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQK--QFGN-------YNPIYTIPVGSIDPLKLPAQ-------------------------- 198 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHH--HhCC-------CCceEEEcccccChhhcccc--------------------------
Confidence 457899999999998888874 2321 23489999999988765421
Q ss_pred HhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc--CCcEEEEEecCCcc
Q 012874 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITIR 443 (454)
Q Consensus 393 ~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~~ 443 (454)
....+...|+++||+.++||++.+++|+.++.+ .+++|+|+|.|+..
T Consensus 199 ----~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~ 247 (372)
T cd04949 199 ----FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEE 247 (372)
T ss_pred ----hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchH
Confidence 001145689999999999999999999999876 37999999999754
No 86
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.78 E-value=8.5e-08 Score=99.55 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred hhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHh
Q 012874 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (454)
Q Consensus 315 ~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~ 394 (454)
..+|++++.|+...+.+.+ .|.+ +.++.++.|+++.. |.+.. .++++++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~---~gi~------~~ki~v~GiPv~~~-f~~~~-------------------~~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFID---VGID------PSTVKVTGIPIDNK-FETPI-------------------DQKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHH---cCCC------HHHEEEECeecChH-hcccc-------------------cHHHHHHHc
Confidence 4689999999999888874 3432 35788877777633 43211 123566788
Q ss_pred CCCCCCCCc-EEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHH
Q 012874 395 GLPVDRNIP-VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLY 449 (454)
Q Consensus 395 Gl~~~~~~~-lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~ 449 (454)
|++. +.+ ++++.|++...||++.+++++... ..++++++++.+.+...+++.
T Consensus 197 ~l~~--~~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~~l~~~l~ 249 (391)
T PRK13608 197 NLDP--DKQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSKELKRSLT 249 (391)
T ss_pred CCCC--CCCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCHHHHHHHH
Confidence 9875 445 456789999999999999986432 147888766433333334443
No 87
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.71 E-value=3.9e-07 Score=84.36 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=35.8
Q ss_pred EEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCccchHH
Q 012874 407 FIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIRNYST 447 (454)
Q Consensus 407 fvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~~~~~ 447 (454)
|+||+.+.||++.+++|+..+.++ +++++++|.++.....+
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~ 151 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLE 151 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHH
Confidence 999999999999999999999764 89999999997655443
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.71 E-value=1.8e-07 Score=95.06 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=92.5
Q ss_pred CCCEEEEeCCCc-hhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 227 GEDVVFVANDWH-TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 227 ~pD~VIH~h~w~-ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
+|| |||+|+.. ..+.+..+... .++|+|++.|+..... .+.++.
T Consensus 88 ~pD-vV~~~g~~~~~~~~~~aa~~-------~~iPvv~~~~g~~s~~---------~~~~~~------------------ 132 (363)
T cd03786 88 KPD-LVLVLGDTNETLAAALAAFK-------LGIPVAHVEAGLRSFD---------RGMPDE------------------ 132 (363)
T ss_pred CCC-EEEEeCCchHHHHHHHHHHH-------cCCCEEEEecccccCC---------CCCCch------------------
Confidence 799 99999743 34444444432 5899887666532100 000100
Q ss_pred hHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCC-cCCCCCCCcccccccccCccccccchH
Q 012874 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKP 384 (454)
Q Consensus 306 ~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGi-D~~~f~p~~~~~~~~~~~~~~~~~~k~ 384 (454)
.. -+...+.+|.++++|+...+.+.+ .|+ ++.++.+|+|++ |...|.+..+ +
T Consensus 133 ~~--r~~~~~~ad~~~~~s~~~~~~l~~---~G~------~~~kI~vign~v~d~~~~~~~~~---------------~- 185 (363)
T cd03786 133 EN--RHAIDKLSDLHFAPTEEARRNLLQ---EGE------PPERIFVVGNTMIDALLRLLELA---------------K- 185 (363)
T ss_pred HH--HHHHHHHhhhccCCCHHHHHHHHH---cCC------CcccEEEECchHHHHHHHHHHhh---------------c-
Confidence 00 112345689999999998888874 443 247899999995 6443322110 0
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEcCCcc---ccCHHHHHHHHhhcccCCcEEEEEecCC
Q 012874 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLVSIT 441 (454)
Q Consensus 385 ~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~---qKG~d~LieA~~~l~~~~v~lvIvG~G~ 441 (454)
.+..+++++++. +..++++.||+.. +||++.|++|+..+.+.++++++.|+++
T Consensus 186 --~~~~~~~~~~~~--~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~ 241 (363)
T cd03786 186 --KELILELLGLLP--KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR 241 (363)
T ss_pred --cchhhhhcccCC--CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 011234677763 4457778999875 7999999999998864457777766655
No 89
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.68 E-value=6.1e-07 Score=78.61 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=82.6
Q ss_pred eEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCCceEE
Q 012874 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~GV~~~ 165 (454)
||++++... ..++..++++|.++|+||+++++..+..... ...|+.++
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~-----------------------~~~~i~~~ 48 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKYE-----------------------IIEGIKVI 48 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhhh-----------------------HhCCeEEE
Confidence 688887753 3467899999999999999999854421110 12466666
Q ss_pred EecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCch-hHHHH
Q 012874 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT-SLIPC 244 (454)
Q Consensus 166 ~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~t-a~~~~ 244 (454)
.++.+ .+ ... + .+. ...+.+.+++ .+|| |||+|...+ ++++.
T Consensus 49 ~~~~~---~k-------~~~----------~--~~~--~~~l~k~ik~------------~~~D-vIh~h~~~~~~~~~~ 91 (139)
T PF13477_consen 49 RLPSP---RK-------SPL----------N--YIK--YFRLRKIIKK------------EKPD-VIHCHTPSPYGLFAM 91 (139)
T ss_pred EecCC---CC-------ccH----------H--HHH--HHHHHHHhcc------------CCCC-EEEEecCChHHHHHH
Confidence 55322 00 000 0 111 1123333333 3899 999998765 66676
Q ss_pred HHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceeccC
Q 012874 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (454)
Q Consensus 245 ~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS 324 (454)
+++... ..+|+|+|.|+..+... +... .-...+++.+++.+|.|++.|
T Consensus 92 l~~~~~------~~~~~i~~~hg~~~~~~-----------~~~~---------------~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 92 LAKKLL------KNKKVIYTVHGSDFYNS-----------SKKK---------------KLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred HHHHHc------CCCCEEEEecCCeeecC-----------CchH---------------HHHHHHHHHHHHhCCEEEEcC
Confidence 665541 34899999998643110 0000 001245677889999999876
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.60 E-value=1.5e-06 Score=89.19 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=57.4
Q ss_pred hhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHH
Q 012874 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (454)
Q Consensus 314 i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~ 393 (454)
.+.+|.++++|+..++.+.+ +| .++.++.|.+.... .+.. .++.++++
T Consensus 132 ~~~~d~i~~~~~~~~~~~~~---~g---------~~~~~~G~p~~~~~-~~~~-------------------~~~~~~~~ 179 (380)
T PRK00025 132 AKATDHVLALFPFEAAFYDK---LG---------VPVTFVGHPLADAI-PLLP-------------------DRAAARAR 179 (380)
T ss_pred HHHHhhheeCCccCHHHHHh---cC---------CCeEEECcCHHHhc-cccc-------------------ChHHHHHH
Confidence 56789999999986666652 22 12444444443221 1100 13446778
Q ss_pred hCCCCCCCCcEE-EEEc-CCccc-cCHHHHHHHHhhcccC--CcEEEEEec
Q 012874 394 VGLPVDRNIPVI-GFIG-RLEEQ-KGSDILAAAIPHFIKE--NVQIIVLVS 439 (454)
Q Consensus 394 ~Gl~~~~~~~lI-lfvG-RL~~q-KG~d~LieA~~~l~~~--~v~lvIvG~ 439 (454)
+|++. +.++| ++.| |..+. ++.+.+++|++.+.+. +++++++|.
T Consensus 180 l~~~~--~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~ 228 (380)
T PRK00025 180 LGLDP--DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV 228 (380)
T ss_pred cCCCC--CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 88875 45654 4445 56554 4579999999988653 789999976
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.56 E-value=6.9e-07 Score=91.46 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=90.6
Q ss_pred CCCCEEEEeC-CCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCccc
Q 012874 226 YGEDVVFVAN-DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (454)
Q Consensus 226 ~~pD~VIH~h-~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~ 304 (454)
.+|| +||+| |+.+++.+..+... .++|++++-++....+.+. ..|+.
T Consensus 85 ~~pD-iv~~~gd~~~~la~a~aa~~-------~~ipv~h~~~g~~s~~~~~-------~~~~~----------------- 132 (365)
T TIGR00236 85 EKPD-IVLVQGDTTTTLAGALAAFY-------LQIPVGHVEAGLRTGDRYS-------PMPEE----------------- 132 (365)
T ss_pred cCCC-EEEEeCCchHHHHHHHHHHH-------hCCCEEEEeCCCCcCCCCC-------CCccH-----------------
Confidence 3799 99999 47666666665553 6899876544331100000 01110
Q ss_pred chHHHHHHH-hhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCC-cCCCCCCCcccccccccCccccccc
Q 012874 305 RKINWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDA 382 (454)
Q Consensus 305 ~~~~~~k~~-i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGi-D~~~f~p~~~~~~~~~~~~~~~~~~ 382 (454)
+.+.. ...||.++++|+..++.+.+ .|. +++++.+++||+ |...+.+..
T Consensus 133 ----~~r~~~~~~ad~~~~~s~~~~~~l~~---~G~------~~~~I~vign~~~d~~~~~~~~---------------- 183 (365)
T TIGR00236 133 ----INRQLTGHIADLHFAPTEQAKDNLLR---ENV------KADSIFVTGNTVIDALLTNVEI---------------- 183 (365)
T ss_pred ----HHHHHHHHHHHhccCCCHHHHHHHHH---cCC------CcccEEEeCChHHHHHHHHHhh----------------
Confidence 11222 23589999999999999985 343 246899999996 543221110
Q ss_pred hHHHHHHHHHHhCCCCCCCCcEEEEEc-CCc-cccCHHHHHHHHhhccc--CCcEEEEEecCCc
Q 012874 383 KPLLKEALQAEVGLPVDRNIPVIGFIG-RLE-EQKGSDILAAAIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 383 k~~~k~~lr~~~Gl~~~~~~~lIlfvG-RL~-~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~ 442 (454)
..++.++++++. +.+++++.+ |.+ ..||++.|++|+.++.+ .+++++++|.+..
T Consensus 184 --~~~~~~~~~~~~----~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~ 241 (365)
T TIGR00236 184 --AYSSPVLSEFGE----DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNP 241 (365)
T ss_pred --ccchhHHHhcCC----CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCCh
Confidence 012334556663 234555554 653 46999999999999865 3789999876543
No 92
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.51 E-value=2.8e-06 Score=87.46 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=71.0
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHH
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k 387 (454)
.+++..++.||.|+++|+.+.+.+.+ ++ .++.+|+||+|.+.|.+.... ...
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~---~~---------~~i~~i~ngvd~~~f~~~~~~------------~~~---- 196 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRR---LN---------PNVVLVPNGVDYEHFAAARDP------------PPP---- 196 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhh---CC---------CCEEEcccccCHHHhhccccc------------CCC----
Confidence 45778889999999999998877763 22 579999999999999764311 000
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecC
Q 012874 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSI 440 (454)
Q Consensus 388 ~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G 440 (454)
.+... ..+.++|+|+|++.+.+++++|.+++... .+++|+|+|.|
T Consensus 197 --~~~~~----~~~~~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~ 241 (373)
T cd04950 197 --PADLA----ALPRPVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPV 241 (373)
T ss_pred --hhHHh----cCCCCEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCC
Confidence 01111 12568999999999988888777665532 47999999998
No 93
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.29 E-value=1.6e-05 Score=80.68 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=79.0
Q ss_pred CC-CEEEEeCCCch-h-HH-HHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCc
Q 012874 227 GE-DVVFVANDWHT-S-LI-PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPV 302 (454)
Q Consensus 227 ~p-D~VIH~h~w~t-a-~~-~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~ 302 (454)
++ | |||.|.... + .+ ..++.... ..++|+|+++|++.+.. ... .
T Consensus 63 ~~~D-vv~~~~P~~~~~~~~~~~~~~~k-----~~~~k~i~~ihD~~~~~-~~~----------~--------------- 110 (333)
T PRK09814 63 KPGD-IVIFQFPTWNGFEFDRLFVDKLK-----KKQVKIIILIHDIEPLR-FDS----------N--------------- 110 (333)
T ss_pred CCCC-EEEEECCCCchHHHHHHHHHHHH-----HcCCEEEEEECCcHHHh-ccc----------c---------------
Confidence 45 9 899986321 1 11 22222221 13799999999976431 100 0
Q ss_pred ccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccc
Q 012874 303 RGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382 (454)
Q Consensus 303 ~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~ 382 (454)
.....+++..++.||.||++|+.+++.+.+ .|+ .+.++.+++|..+.....+
T Consensus 111 -~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~---~g~------~~~~i~~~~~~~~~~~~~~------------------ 162 (333)
T PRK09814 111 -YYLMKEEIDMLNLADVLIVHSKKMKDRLVE---EGL------TTDKIIVQGIFDYLNDIEL------------------ 162 (333)
T ss_pred -chhhHHHHHHHHhCCEEEECCHHHHHHHHH---cCC------CcCceEecccccccccccc------------------
Confidence 001345677888999999999999999874 342 1245666555433211000
Q ss_pred hHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 383 k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
+. .+ ...+.|+|+|||....++ .+ ...+++|+|+|+|+.+
T Consensus 163 --------~~---~~--~~~~~i~yaG~l~k~~~l---~~-----~~~~~~l~i~G~g~~~ 202 (333)
T PRK09814 163 --------VK---TP--SFQKKINFAGNLEKSPFL---KN-----WSQGIKLTVFGPNPED 202 (333)
T ss_pred --------cc---cc--cCCceEEEecChhhchHH---Hh-----cCCCCeEEEECCCccc
Confidence 00 01 134689999999954322 11 1247899999999754
No 94
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.14 E-value=2.3e-05 Score=89.03 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=99.3
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|-+||+|..++|.+++... .+.++-|-+|...+ .. +++.++.+ .
T Consensus 232 gD-~VWVHDYHL~LlP~~LR~~~------p~~~IGfFlHiPFP-----s~---------Eifr~LP~------------r 278 (934)
T PLN03064 232 GD-VVWCHDYHLMFLPKCLKEYN------SNMKVGWFLHTPFP-----SS---------EIHRTLPS------------R 278 (934)
T ss_pred CC-EEEEecchhhHHHHHHHHhC------CCCcEEEEecCCCC-----Ch---------HHHhhCCc------------H
Confidence 36 99999999999999998752 67899999997532 11 12221111 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCCccc--hhh---hccCCeEEEcCCCcCCCCCCCcccccccccCccccc
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKGVEL--DNI---IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 380 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~l--~~~---l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~ 380 (454)
.-+-.++..||.|=.-+..|++...+. ...|.+. ..+ -+..++.+.|-|||.+.|...... .+
T Consensus 279 ~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~--------~~-- 348 (934)
T PLN03064 279 SELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET--------PQ-- 348 (934)
T ss_pred HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC--------hh--
Confidence 123347788999999888888765431 0111110 000 012347788999999988643210 01
Q ss_pred cchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc
Q 012874 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429 (454)
Q Consensus 381 ~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~ 429 (454)
-....++++++++ +..+|+.|+||.+.||+...++|++.+++
T Consensus 349 --v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~ 390 (934)
T PLN03064 349 --VQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLE 390 (934)
T ss_pred --HHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHH
Confidence 1122345677665 45799999999999999999999999876
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.12 E-value=0.00012 Score=76.00 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=61.3
Q ss_pred HHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHH
Q 012874 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (454)
Q Consensus 312 ~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr 391 (454)
...+.+|+|++.++...+.+.+ .| .+...+.|++......... .++..+
T Consensus 134 ~l~~~~d~v~~~~~~e~~~~~~---~g---------~~~~~vGnPv~~~~~~~~~-------------------~~~~~r 182 (385)
T TIGR00215 134 KIEKATDFLLAILPFEKAFYQK---KN---------VPCRFVGHPLLDAIPLYKP-------------------DRKSAR 182 (385)
T ss_pred HHHHHHhHhhccCCCcHHHHHh---cC---------CCEEEECCchhhhccccCC-------------------CHHHHH
Confidence 3446799999999976665542 22 2455677776322110000 123456
Q ss_pred HHhCCCCCCCCcEEEEE--cCCcc-ccCHHHHHHHHhhcccC--CcEEEEEe
Q 012874 392 AEVGLPVDRNIPVIGFI--GRLEE-QKGSDILAAAIPHFIKE--NVQIIVLV 438 (454)
Q Consensus 392 ~~~Gl~~~~~~~lIlfv--GRL~~-qKG~d~LieA~~~l~~~--~v~lvIvG 438 (454)
+++|++. +.++|++. +|..+ +|+...+++|++.+.+. ++++++.+
T Consensus 183 ~~lgl~~--~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 183 EKLGIDH--NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred HHcCCCC--CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 7788875 56777766 48887 89999999999988653 67887654
No 96
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=2.1e-05 Score=86.48 Aligned_cols=326 Identities=20% Similarity=0.229 Sum_probs=181.2
Q ss_pred CCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcc--------------cccCCc------------ceEEEEEe--CC
Q 012874 96 PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY--------------KDAWDT------------DVVIELKV--GD 147 (454)
Q Consensus 96 P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~--------------~~~~d~------------~~~~~v~~--~~ 147 (454)
|-. .||+|...+.....++..|...+.+..+|.+. .+.|.. ..+.+++| .+
T Consensus 111 p~l-gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~~ 189 (750)
T COG0058 111 PGL-GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGYD 189 (750)
T ss_pred ccc-cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEecc
Confidence 643 49999999999999999999999998776541 112210 02333433 33
Q ss_pred -eeeEEEEEEEeeCCceEEEecCcc-----hhhhhhcCCCCccCCCCCCCCCcchHHHH---HHHHHHHHHHhhhh-ccc
Q 012874 148 -KIEKVRFFHCHKRGVDRVFVDHPW-----FLAKVWGKTQSKIYGPRTGEDYQDNQLRF---SLLCQAALEAPRIL-NLN 217 (454)
Q Consensus 148 -~~~~v~~~~~~~~GV~~~~i~~p~-----~~~k~w~~~~~~~y~~~~g~~~~d~~~r~---~~~~~a~~~~ir~l-~~~ 217 (454)
+.-++|++......+++++.+... ..+.+ | ..+|+.++ +.+|+ -+|+.+.++.+..+ ...
T Consensus 190 ~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~i---T-~~LYp~Ds------~elRl~Qeyfl~~agvq~I~~~~~~~ 259 (750)
T COG0058 190 NRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNI---T-RVLYPGDS------KELRLKQEYFLGSAGVQDILARGHLE 259 (750)
T ss_pred CcEEEEEEEEEecCccceEeecCCCcccchhhhhH---H-hhcCCCCc------HHHHHhhhheeeeHHHHHHHHHhhhc
Confidence 333467776666666777765321 11111 1 24665321 33443 24556666666654 111
Q ss_pred CCCCCCCCCCCCEEEEeCCCchhHHHHHHHH-hccCCCC-------CCCCeEEEEEeCCcccCC--CCccccccCCCCcc
Q 012874 218 SNKYFSGPYGEDVVFVANDWHTSLIPCYLKT-MYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQ 287 (454)
Q Consensus 218 ~~~~~~~~~~pD~VIH~h~w~ta~~~~~l~~-~~~~~~~-------~~~~pvV~TiH~~~~~g~--~~~~~~~~l~lp~~ 287 (454)
. +.+++. +.|.||-|.+++.+-+-+ .....|. ....-.+||.|++.+.|. |+.+.+..+ +|..
T Consensus 260 ~-----~~~~~~-~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~-lpr~ 332 (750)
T COG0058 260 H-----HDLDVL-ADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKL-LPRH 332 (750)
T ss_pred c-----ccccch-hhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHH-hhhh
Confidence 0 013455 679999887766543322 2222221 023458999999976654 444333211 0100
Q ss_pred c----------ccc--ccccc---CCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEE
Q 012874 288 F----------KSS--FDFID---GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352 (454)
Q Consensus 288 ~----------~~~--~~~~~---~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~v 352 (454)
+ ... +.... .-..|... ++|...++..|..|..||.-+.+-+.+. .+. .... +-+.+|.-
T Consensus 333 ~~ii~~in~~~l~~~~~~~~~~~~~~~~~i~~--v~Ma~lal~~S~~vNGVsklH~el~k~~-~~~-~~~~-~~p~~i~n 407 (750)
T COG0058 333 LQIIYEINARFLPEVRLLYLGDLIRRGSPIEE--VNMAVLALVGSHSVNGVSKLHSELSKKM-WFA-DFHG-LYPEKINN 407 (750)
T ss_pred hhhHHHHHhhhhHHHHhhccccccccCCcccc--eehhhhhhhhhhhhHhHHHHHHHHHHHH-HHH-Hhcc-cCcccccc
Confidence 0 000 00000 00001111 5666678899999999998776655431 000 0001 11578999
Q ss_pred EcCCCcCCCCCCCcccccccccCcc--------------------------ccccchHHHHHH----HHHHhCCCCCCCC
Q 012874 353 IVNGMDVQEWNPLTDKYIGVKYDAS--------------------------TVMDAKPLLKEA----LQAEVGLPVDRNI 402 (454)
Q Consensus 353 IpNGiD~~~f~p~~~~~~~~~~~~~--------------------------~~~~~k~~~k~~----lr~~~Gl~~~~~~ 402 (454)
|.|||....|--..-+.+...++.. .+.+-|..+|+. +..+.|+..+++.
T Consensus 408 vTNGIt~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~ 487 (750)
T COG0058 408 VTNGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNA 487 (750)
T ss_pred ccCCcCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCc
Confidence 9999999999432222222222211 111223334433 3446788888899
Q ss_pred cEEEEEcCCccccCHHHHHHHHhhccc-------CCcEEEEEecCCccc
Q 012874 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-------ENVQIIVLVSITIRN 444 (454)
Q Consensus 403 ~lIlfvGRL~~qKG~d~LieA~~~l~~-------~~v~lvIvG~G~~~~ 444 (454)
..++|+-|+.++|...+.+.=+..+.. ..+++|+.|...+.+
T Consensus 488 lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y 536 (750)
T COG0058 488 LFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPAD 536 (750)
T ss_pred ceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcc
Confidence 999999999999999887665555433 248889999876644
No 97
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.04 E-value=0.00021 Score=79.70 Aligned_cols=213 Identities=17% Similarity=0.180 Sum_probs=121.8
Q ss_pred CCCEEEEeCCCchhHHHHHHHH-hccCCCC-------CCCCeEEEEEeCCcccCC--CCccccccCCCCc----------
Q 012874 227 GEDVVFVANDWHTSLIPCYLKT-MYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPA---------- 286 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~-~~~~~~~-------~~~~pvV~TiH~~~~~g~--~~~~~~~~l~lp~---------- 286 (454)
.+- +||.||-|.+++.+-+-+ .....|. ....-++||.|+..+.+. |+.+.+..+ +|.
T Consensus 313 ~~v-~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~-lpr~l~Ii~eIn~ 390 (815)
T PRK14986 313 DKI-AIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKI-LPRHLQIIFEIND 390 (815)
T ss_pred ccc-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHH-ccHhhhHHHHHHH
Confidence 344 899999998776544332 2211111 134568999999976554 444333211 111
Q ss_pred ccccc----ccc----ccCC--CCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCC
Q 012874 287 QFKSS----FDF----IDGY--NKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG 356 (454)
Q Consensus 287 ~~~~~----~~~----~~~~--~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNG 356 (454)
++... +.- +... ..+..+..++|...++..|..|..||.-..+-+.+ .-+. +... +-+.++.-|.||
T Consensus 391 ~fl~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~-~~f~-df~~-l~P~kf~niTNG 467 (815)
T PRK14986 391 YFLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQ-SLFA-DFAK-IFPGRFCNVTNG 467 (815)
T ss_pred HHHHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHH-HHHH-HHHh-hCCCcccccCCC
Confidence 11100 000 0000 00000124677778899999999999876655432 1110 0001 224667789999
Q ss_pred CcCCCCC----CCcccc----ccccc--------------Cc----cccccchHHHHHHH----HHHhCCCCCCCCcEEE
Q 012874 357 MDVQEWN----PLTDKY----IGVKY--------------DA----STVMDAKPLLKEAL----QAEVGLPVDRNIPVIG 406 (454)
Q Consensus 357 iD~~~f~----p~~~~~----~~~~~--------------~~----~~~~~~k~~~k~~l----r~~~Gl~~~~~~~lIl 406 (454)
|....|- |.-... |...+ +. +++.+.|..+|+.| +++.|...|++...++
T Consensus 468 V~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~ 547 (815)
T PRK14986 468 VTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDV 547 (815)
T ss_pred CChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceee
Confidence 9999996 432221 11111 11 11333444445444 5567999899999999
Q ss_pred EEcCCccccCHHH-HHHHHhhccc---C------CcEEEEEecCCccc
Q 012874 407 FIGRLEEQKGSDI-LAAAIPHFIK---E------NVQIIVLVSITIRN 444 (454)
Q Consensus 407 fvGRL~~qKG~d~-LieA~~~l~~---~------~v~lvIvG~G~~~~ 444 (454)
++-|+.++|..++ ++..+.++.+ . ++++|+.|...+.+
T Consensus 548 qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y 595 (815)
T PRK14986 548 QIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAY 595 (815)
T ss_pred eehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCc
Confidence 9999999999999 7777655532 2 58999999876643
No 98
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.96 E-value=0.00036 Score=77.84 Aligned_cols=217 Identities=17% Similarity=0.203 Sum_probs=126.2
Q ss_pred CCCEEEEeCCCchhHHHHHH-HHhccCCCC-------CCCCeEEEEEeCCcccCC--CCccccccCCCCcccc-------
Q 012874 227 GEDVVFVANDWHTSLIPCYL-KTMYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQFK------- 289 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l-~~~~~~~~~-------~~~~pvV~TiH~~~~~g~--~~~~~~~~l~lp~~~~------- 289 (454)
++. +||.||-|.+++.+-+ +......+. ....-+++|.|++.+.+. |+.+.+..+ +|.-+.
T Consensus 300 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lpr~~~II~~In~ 377 (797)
T cd04300 300 DKV-AIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LPRHLEIIYEINR 377 (797)
T ss_pred Cce-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-ChHHHHHHHHHHH
Confidence 678 8999999987665433 322211121 123568999999966543 444333211 111110
Q ss_pred -----------------cccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEE
Q 012874 290 -----------------SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352 (454)
Q Consensus 290 -----------------~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~v 352 (454)
..+..++ ...+..++|...++..|..|..||.-..+-+.+. .+. +... +=+.++.-
T Consensus 378 ~~~~~~~~~~~~~~~~~~~l~ii~----~~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~-~~~-df~~-l~P~kf~n 450 (797)
T cd04300 378 RFLEEVRAKYPGDEDRIRRMSIIE----EGGEKQVRMAHLAIVGSHSVNGVAALHSELLKET-VFK-DFYE-LYPEKFNN 450 (797)
T ss_pred HHHHHHHHhcCCCHHHHHhhcccc----cCCCCEEehHHHHHhcCcchhhhHHHHHHHHHHh-hHH-HHHh-hCCCccCC
Confidence 0010011 0011246777889999999999998766655531 010 0001 11367889
Q ss_pred EcCCCcCCCCC----CCcccc----cccc-------------cC-c----cccccchHHHHHHH----HHHhCCCCCCCC
Q 012874 353 IVNGMDVQEWN----PLTDKY----IGVK-------------YD-A----STVMDAKPLLKEAL----QAEVGLPVDRNI 402 (454)
Q Consensus 353 IpNGiD~~~f~----p~~~~~----~~~~-------------~~-~----~~~~~~k~~~k~~l----r~~~Gl~~~~~~ 402 (454)
|.|||....|- |.-... |... |. - .++.+.|..+|+.| +++.|+..|++.
T Consensus 451 ~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~s 530 (797)
T cd04300 451 KTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDS 530 (797)
T ss_pred cCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCc
Confidence 99999999995 322111 1111 11 1 12334455555555 557899989999
Q ss_pred cEEEEEcCCccccCHHH-HHHHHhhccc---C------CcEEEEEecCCccc--hHHHHHhh
Q 012874 403 PVIGFIGRLEEQKGSDI-LAAAIPHFIK---E------NVQIIVLVSITIRN--YSTLYTFI 452 (454)
Q Consensus 403 ~lIlfvGRL~~qKG~d~-LieA~~~l~~---~------~v~lvIvG~G~~~~--~~~l~~~~ 452 (454)
..++++-|+.++|...+ ++..+.++.+ . +.++|+.|...+.+ ..++-++|
T Consensus 531 lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI 592 (797)
T cd04300 531 LFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLI 592 (797)
T ss_pred cEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHH
Confidence 99999999999999999 6666555432 2 47899999876643 33444433
No 99
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.72 E-value=0.0007 Score=75.35 Aligned_cols=221 Identities=16% Similarity=0.195 Sum_probs=124.1
Q ss_pred CCCEEEEeCCCchhHHHHHH-HHhccCCCC-------CCCCeEEEEEeCCcccCC--CCccccccCCCCcc---------
Q 012874 227 GEDVVFVANDWHTSLIPCYL-KTMYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQ--------- 287 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l-~~~~~~~~~-------~~~~pvV~TiH~~~~~g~--~~~~~~~~l~lp~~--------- 287 (454)
++. +||.||-|.+++.+-+ +......|. ....-+++|.|++.+.+. |+.+.+..+ +|.-
T Consensus 302 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lpr~~~ii~~in~ 379 (798)
T PRK14985 302 DYE-VIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LPRHMQIIKEINT 379 (798)
T ss_pred CCc-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hHHHHHHHHHHHH
Confidence 678 8999999987665433 322211111 124568999999976553 443333211 1110
Q ss_pred -cccc--cccccCCC-----CCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcC
Q 012874 288 -FKSS--FDFIDGYN-----KPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDV 359 (454)
Q Consensus 288 -~~~~--~~~~~~~~-----k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~ 359 (454)
+... ..+.+.-+ .......++|...++..|..|..||.-..+-+.+ .-+. +... +=+.++.-|.|||..
T Consensus 380 ~fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~-~~f~-df~~-l~p~kf~nvTNGVt~ 456 (798)
T PRK14985 380 RFKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVK-DLFP-EYHQ-LWPNKFHNVTNGITP 456 (798)
T ss_pred HHHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHH-hhhh-hhHh-hCCCccCCcCCCcCc
Confidence 0000 00000000 0000123677778899999999999865544442 1110 0000 114678899999999
Q ss_pred CCC----CCCcccc----ccc-------------ccCc-cc----cccchHHHHHHH----HHHhCCCCCCCCcEEEEEc
Q 012874 360 QEW----NPLTDKY----IGV-------------KYDA-ST----VMDAKPLLKEAL----QAEVGLPVDRNIPVIGFIG 409 (454)
Q Consensus 360 ~~f----~p~~~~~----~~~-------------~~~~-~~----~~~~k~~~k~~l----r~~~Gl~~~~~~~lIlfvG 409 (454)
..| +|.-... |.. .|.. .+ +.+.|..+|+.| +++.|+..|++...++++-
T Consensus 457 rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~k 536 (798)
T PRK14985 457 RRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQIK 536 (798)
T ss_pred chhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhHh
Confidence 999 4532221 211 1211 12 133344444444 5667988888999999999
Q ss_pred CCccccCHHH-HHHHHhhccc---C------CcEEEEEecCCccc--hHHHHHhh
Q 012874 410 RLEEQKGSDI-LAAAIPHFIK---E------NVQIIVLVSITIRN--YSTLYTFI 452 (454)
Q Consensus 410 RL~~qKG~d~-LieA~~~l~~---~------~v~lvIvG~G~~~~--~~~l~~~~ 452 (454)
|+.++|...+ ++..+.++.+ . +.++|+.|...+.+ ..++-++|
T Consensus 537 R~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI 591 (798)
T PRK14985 537 RLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAI 591 (798)
T ss_pred hhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHH
Confidence 9999999999 7666555433 1 48999999876543 33444443
No 100
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.72 E-value=0.0059 Score=62.76 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=21.7
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEecCC
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~y~ 129 (454)
|||==--.-.++++|.++||+|..++-.++
T Consensus 11 TGGHi~Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 11 SAGHVTPNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred cHHHHHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 444333445788889999999999985544
No 101
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.61 E-value=0.0009 Score=74.55 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=125.6
Q ss_pred CCCEEEEeCCCchhHHHHHHHH-hccCCCC-------CCCCeEEEEEeCCcccCC--CCccccccC---------CCCcc
Q 012874 227 GEDVVFVANDWHTSLIPCYLKT-MYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLL---------NLPAQ 287 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~-~~~~~~~-------~~~~pvV~TiH~~~~~g~--~~~~~~~~l---------~lp~~ 287 (454)
++. +||.||-|.+++.+-+-+ .....|. ....-+++|.|++.+.+. |+.+.+..+ ++..+
T Consensus 297 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~ 375 (794)
T TIGR02093 297 KKV-AIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRR 375 (794)
T ss_pred cce-EEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHH
Confidence 677 899999998766544332 2211111 123458999999976553 444333211 11111
Q ss_pred ccc--------------ccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEE
Q 012874 288 FKS--------------SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGI 353 (454)
Q Consensus 288 ~~~--------------~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vI 353 (454)
+.. ++..++. -.+..++|...++..|..|..||.-..+-+.+. .+. .... +=+.++.-|
T Consensus 376 fl~~~~~~~p~d~~~~~~~sii~~----~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~-~~~-df~~-l~P~kf~n~ 448 (794)
T TIGR02093 376 FLAELAAKGPGDEAKIRRMSIIEE----GQSKRVRMANLAIVGSHSVNGVAALHTELLKED-LLK-DFYE-LYPEKFNNK 448 (794)
T ss_pred HHHHHHHhCCCcHHHHhheeeeec----CCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHH-HHH-HHHh-hCCCccCCc
Confidence 110 0000000 001246777889999999999998766655421 000 0001 113678889
Q ss_pred cCCCcCCCCC----CCccc----cccc-------------ccCc-----cccccchHHHHHHH----HHHhCCCCCCCCc
Q 012874 354 VNGMDVQEWN----PLTDK----YIGV-------------KYDA-----STVMDAKPLLKEAL----QAEVGLPVDRNIP 403 (454)
Q Consensus 354 pNGiD~~~f~----p~~~~----~~~~-------------~~~~-----~~~~~~k~~~k~~l----r~~~Gl~~~~~~~ 403 (454)
.|||....|- |.-.. .+.. .+.. +++.+.|..+|+.| +++.|+..|++..
T Consensus 449 TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~sl 528 (794)
T TIGR02093 449 TNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSI 528 (794)
T ss_pred CCCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcccc
Confidence 9999999995 32111 1111 1111 22334444555554 5577988888999
Q ss_pred EEEEEcCCccccCHHH-HHHHHhhccc---C------CcEEEEEecCCccc--hHHHHHhh
Q 012874 404 VIGFIGRLEEQKGSDI-LAAAIPHFIK---E------NVQIIVLVSITIRN--YSTLYTFI 452 (454)
Q Consensus 404 lIlfvGRL~~qKG~d~-LieA~~~l~~---~------~v~lvIvG~G~~~~--~~~l~~~~ 452 (454)
.++++-|+.++|...+ ++..+.++.+ . +.++|+.|...+.+ ..++-++|
T Consensus 529 fdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI 589 (794)
T TIGR02093 529 FDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLI 589 (794)
T ss_pred chhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHH
Confidence 9999999999999999 7766655433 2 56899999876643 33444443
No 102
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=5.1e-05 Score=78.09 Aligned_cols=170 Identities=19% Similarity=0.261 Sum_probs=95.1
Q ss_pred CEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCC--CCccccccCCCCcccccccccccCCCCCcccch
Q 012874 229 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (454)
Q Consensus 229 D~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~--~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~ 306 (454)
-||-|.|.|.++..-++.+.. ...+-.|||.|..- .|+ |+. ..+.+|-.+.|- .|...| +-.-+..
T Consensus 175 ~vVahFHEW~AGVgL~l~R~r------rl~iaTifTTHATL-LGRyLCA~-~~DfYNnLd~f~--vD~EAG--kr~IYHr 242 (692)
T KOG3742|consen 175 AVVAHFHEWQAGVGLILCRAR------RLDIATIFTTHATL-LGRYLCAG-NVDFYNNLDSFD--VDKEAG--KRQIYHR 242 (692)
T ss_pred HHHHHHHHHHhccchheehhc------ccceEEEeehhHHH-HHHHHhcc-cchhhhchhhcc--cchhhc--cchhHHH
Confidence 457899999987655554432 24677889999763 232 222 111112111110 000011 1111234
Q ss_pred HHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccc-cchHH
Q 012874 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM-DAKPL 385 (454)
Q Consensus 307 ~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~-~~k~~ 385 (454)
..+++++...|+...|||+-.+-|.. -.|.+.+=.+.|||.++..|+.... | ++++ ..|+.
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAe----------HlLkRKPD~itPNGLNV~KFsA~HE------F--QNLHA~~Kek 304 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAE----------HLLKRKPDVITPNGLNVKKFSAVHE------F--QNLHAQKKEK 304 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHH----------HHHhcCCCeeCCCCcceeehhHHHH------H--HHHHHHHHHH
Confidence 67788999999999999986554432 1233455677899999998864320 1 1111 12222
Q ss_pred HHHHHHHHh-C-CCCCCC-CcEEEEEcCCcc-ccCHHHHHHHHhhcc
Q 012874 386 LKEALQAEV-G-LPVDRN-IPVIGFIGRLEE-QKGSDILAAAIPHFI 428 (454)
Q Consensus 386 ~k~~lr~~~-G-l~~~~~-~~lIlfvGRL~~-qKG~d~LieA~~~l~ 428 (454)
..+.+|-.+ | +.-|-| ...+...||.+. .||-|++||++++|.
T Consensus 305 IndFVRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692)
T KOG3742|consen 305 INDFVRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692)
T ss_pred HHHHhhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhH
Confidence 222223221 1 222223 344666799986 999999999999884
No 103
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.45 E-value=0.0022 Score=68.16 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=110.9
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|-+||+|-.++|.+++... .+.++-|-+|-.. |.. +++.++.+ .
T Consensus 124 ~D-~VWVHDYhL~llp~~LR~~~------~~~~IgFFlHiPF-----Ps~---------eifr~LP~------------r 170 (474)
T PRK10117 124 DD-IIWIHDYHLLPFASELRKRG------VNNRIGFFLHIPF-----PTP---------EIFNALPP------------H 170 (474)
T ss_pred CC-EEEEeccHhhHHHHHHHHhC------CCCcEEEEEeCCC-----CCh---------HHHhhCCC------------h
Confidence 47 99999999999999998752 5789999999753 211 12211111 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCCccch--hh----hccCCeEEEcCCCcCCCCCCCcccccccccCcccc
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKGVELD--NI----IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~l~--~~----l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~ 379 (454)
.-+-.++..+|.|=.-++.+++...+. ...|.+.. .. -+..++.+.|=|||++.|.-....
T Consensus 171 ~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~----------- 239 (474)
T PRK10117 171 DELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAG----------- 239 (474)
T ss_pred HHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhc-----------
Confidence 223357788999999999888765431 01111100 00 122458888999999887432100
Q ss_pred ccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC---CccchHHHHH
Q 012874 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI---TIRNYSTLYT 450 (454)
Q Consensus 380 ~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G---~~~~~~~l~~ 450 (454)
+ .....++++++++ +..+|+-+.||+.-||+..=++|++.+++. ++.|+-+... .-..|+++..
T Consensus 240 -~-~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~ 312 (474)
T PRK10117 240 -P-LPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRH 312 (474)
T ss_pred -h-HHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHH
Confidence 0 0112345666654 457899999999999999999999999873 5667666532 2345666666
Q ss_pred hhh
Q 012874 451 FIM 453 (454)
Q Consensus 451 ~~~ 453 (454)
.|+
T Consensus 313 ~v~ 315 (474)
T PRK10117 313 QLE 315 (474)
T ss_pred HHH
Confidence 554
No 104
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.45 E-value=0.00051 Score=73.27 Aligned_cols=178 Identities=20% Similarity=0.253 Sum_probs=97.3
Q ss_pred CCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccch
Q 012874 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~ 306 (454)
.-| +|-+||+|-.++|.+++... .+.++.|-+|...+ .. +.+.++.+
T Consensus 141 ~~D-~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHiPFP-----s~---------e~fr~lP~------------ 187 (474)
T PF00982_consen 141 PGD-LVWVHDYHLMLLPQMLRERG------PDARIGFFLHIPFP-----SS---------EIFRCLPW------------ 187 (474)
T ss_dssp TT--EEEEESGGGTTHHHHHHHTT--------SEEEEEE-S---------H---------HHHTTSTT------------
T ss_pred CCC-EEEEeCCcHHHHHHHHHhhc------CCceEeeEEecCCC-----CH---------HHHhhCCc------------
Confidence 346 99999999999999998752 57899999998532 11 22222111
Q ss_pred HHHHHHHhhhCCceeccCHHHHHHHHcC--CCCCccchh---h----hccCCeEEEcCCCcCCCCCCCcccccccccCcc
Q 012874 307 INWMKAGILESDMVLTVSPHYAQELVSG--EDKGVELDN---I----IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 377 (454)
Q Consensus 307 ~~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~l~~---~----l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~ 377 (454)
...+-.++..||.|-.-+..+++...+. ..+|.+... . -+...+.+.|=|||.+.|..... +
T Consensus 188 r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~---------~ 258 (474)
T PF00982_consen 188 REEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLAR---------S 258 (474)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH----------
T ss_pred HHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhcc---------C
Confidence 1223457889999999999988865431 112221111 0 11235788888999887642110 0
Q ss_pred ccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC---CccchHHH
Q 012874 378 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI---TIRNYSTL 448 (454)
Q Consensus 378 ~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G---~~~~~~~l 448 (454)
+.-.+..+.++++++- +..+|+-+.|++..||+..=++|++++++. ++.|+-++.. ....|+++
T Consensus 259 ---~~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~ 331 (474)
T PF00982_consen 259 ---PEVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQEL 331 (474)
T ss_dssp ---S---HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHH
T ss_pred ---hHHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHH
Confidence 0011233556776641 247999999999999999999999999772 5677666642 23345566
Q ss_pred HHhhh
Q 012874 449 YTFIM 453 (454)
Q Consensus 449 ~~~~~ 453 (454)
.+.|+
T Consensus 332 ~~~v~ 336 (474)
T PF00982_consen 332 RREVE 336 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 105
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.43 E-value=0.0023 Score=72.95 Aligned_cols=177 Identities=14% Similarity=0.205 Sum_probs=112.2
Q ss_pred CEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHH
Q 012874 229 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN 308 (454)
Q Consensus 229 D~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~ 308 (454)
| +|-+||+|-.++|.+++... .+.++-|.+|-.. |.. +.+.++.+ ..
T Consensus 203 d-~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHiPF-----Ps~---------eifr~LP~------------r~ 249 (854)
T PLN02205 203 D-FVWIHDYHLMVLPTFLRKRF------NRVKLGFFLHSPF-----PSS---------EIYKTLPI------------RE 249 (854)
T ss_pred C-EEEEeCchhhHHHHHHHhhC------CCCcEEEEecCCC-----CCh---------HHHhhCCc------------HH
Confidence 8 99999999999999998752 6789999999753 221 12222111 12
Q ss_pred HHHHHhhhCCceeccCHHHHHHHHcC--CCCCccchh---------hhccCCeEEEcCCCcCCCCCCCcccccccccCcc
Q 012874 309 WMKAGILESDMVLTVSPHYAQELVSG--EDKGVELDN---------IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 377 (454)
Q Consensus 309 ~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g~~l~~---------~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~ 377 (454)
-+-.++..||.|=.-+..|++...+. ...|.+.+. .-+..++...|=|||.+.|.-... ..
T Consensus 250 eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~--------~~ 321 (854)
T PLN02205 250 ELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLS--------LP 321 (854)
T ss_pred HHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhc--------Ch
Confidence 23357888999999999988865431 011211110 013346788888999887743210 00
Q ss_pred ccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC---CccchHHH
Q 012874 378 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI---TIRNYSTL 448 (454)
Q Consensus 378 ~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G---~~~~~~~l 448 (454)
+ .....++++++++-+ +..+|+-|.||..-||+..=++|++++++. ++.||-+... .-.+|+++
T Consensus 322 ~----~~~~~~~l~~~~~~~---~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~ 394 (854)
T PLN02205 322 E----TEAKVKELIKQFCDQ---DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEV 394 (854)
T ss_pred h----HHHHHHHHHHHhccC---CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHH
Confidence 0 112234566666422 467999999999999999999999999873 4666655532 23456666
Q ss_pred HHhhh
Q 012874 449 YTFIM 453 (454)
Q Consensus 449 ~~~~~ 453 (454)
...|+
T Consensus 395 ~~ev~ 399 (854)
T PLN02205 395 QAETH 399 (854)
T ss_pred HHHHH
Confidence 65543
No 106
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.34 E-value=0.0023 Score=59.05 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=29.8
Q ss_pred HHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCC
Q 012874 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEW 362 (454)
Q Consensus 312 ~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f 362 (454)
..+..||..++.|.+.+...-. .+ +.+|.||.-|||++.+
T Consensus 131 ~~l~~~D~~isPT~wQ~~~fP~----------~~-r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 131 LALEQADAGISPTRWQRSQFPA----------EF-RSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHhCCcCcCCCHHHHHhCCH----------HH-HcCcEEeecccchhhc
Confidence 4677899999999875544321 12 2699999999999865
No 107
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.24 E-value=0.00061 Score=61.47 Aligned_cols=54 Identities=28% Similarity=0.501 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccc---CCcEEEEEecCCc
Q 012874 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK---ENVQIIVLVSITI 442 (454)
Q Consensus 387 k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~---~~v~lvIvG~G~~ 442 (454)
|+..+...+.+. +.++|+|+||+.+.||++.|++|+..+.+ .+++++|+|+++.
T Consensus 2 ~~~~~~~~~~~~--~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~ 58 (172)
T PF00534_consen 2 KDKLREKLKIPD--KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY 58 (172)
T ss_dssp HHHHHHHTTT-T--TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH
T ss_pred hHHHHHHcCCCC--CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccc
Confidence 345566677664 67899999999999999999999999863 5899999997654
No 108
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.05 E-value=0.0032 Score=66.87 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=76.3
Q ss_pred hhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHH
Q 012874 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (454)
Q Consensus 314 i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~ 393 (454)
...+|++++-|...+..... .+ . .++..++++.+.+||.+.+.+.- |+ .+.+.++..|.+
T Consensus 207 ~~~~~~~~~ns~~~~~~f~~--~~-~----~L~~~d~~~~y~ei~~s~~~~~~-------~~------~~~~~~~~~r~~ 266 (495)
T KOG0853|consen 207 TGLAWKILVNSYFTKRQFKA--TF-V----SLSNSDITSTYPEIDGSWFTYGQ-------YE------SHLELRLPVRLY 266 (495)
T ss_pred hhccceEecchhhhhhhhhh--hh-h----hcCCCCcceeeccccchhccccc-------cc------cchhccccccee
Confidence 34568888777776665542 11 1 12335599999999998776521 11 122333333444
Q ss_pred hCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC-------CcEEEEEecC--------CccchHHHHHhhh
Q 012874 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-------NVQIIVLVSI--------TIRNYSTLYTFIM 453 (454)
Q Consensus 394 ~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~-------~v~lvIvG~G--------~~~~~~~l~~~~~ 453 (454)
.|... ...++.-+.|+++.||++++++|+.++.+. +.+++++|+- .-.++.++.++|+
T Consensus 267 ~~v~~--~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie 339 (495)
T KOG0853|consen 267 RGVSG--IDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIE 339 (495)
T ss_pred eeecc--cceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHH
Confidence 44442 356788899999999999999999988551 4788889832 2346677777765
No 109
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.016 Score=61.71 Aligned_cols=176 Identities=21% Similarity=0.287 Sum_probs=109.2
Q ss_pred CCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchH
Q 012874 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (454)
Q Consensus 228 pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~ 307 (454)
-| +|-+||+|-.++|-+++.+. .+.++.|.+|-..+ . .+.+.++.+. -
T Consensus 148 gD-iIWVhDYhL~L~P~mlR~~~------~~~~IgfFlHiPfP-----s---------sEvfr~lP~r-----------~ 195 (486)
T COG0380 148 GD-IIWVHDYHLLLVPQMLRERI------PDAKIGFFLHIPFP-----S---------SEVFRCLPWR-----------E 195 (486)
T ss_pred CC-EEEEEechhhhhHHHHHHhC------CCceEEEEEeCCCC-----C---------HHHHhhCchH-----------H
Confidence 47 99999999999999988763 56799999997642 1 1233322211 1
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcC--CCCC------ccchh-hhccCCeEEEcCCCcCCCCCCCc-ccccccccCcc
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSG--EDKG------VELDN-IIRKTGIKGIVNGMDVQEWNPLT-DKYIGVKYDAS 377 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~--~~~g------~~l~~-~l~~~~i~vIpNGiD~~~f~p~~-~~~~~~~~~~~ 377 (454)
. .-.++..||.|-.-++.+++...+. ...+ ...+. .-+..++..+|=|||+..|.-.. ++
T Consensus 196 e-Il~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~--------- 265 (486)
T COG0380 196 E-ILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSP--------- 265 (486)
T ss_pred H-HHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCC---------
Confidence 2 2246778898888888888754321 0111 00000 00124678889999998874332 11
Q ss_pred ccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC------CcEEEEEecC---CccchHHH
Q 012874 378 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE------NVQIIVLVSI---TIRNYSTL 448 (454)
Q Consensus 378 ~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~------~v~lvIvG~G---~~~~~~~l 448 (454)
.+ . ..-.+++++++= +..+|+.+-||..-||+..=+.|+++|+.+ ++.++-+... .-..|+++
T Consensus 266 ~v---~-~~~~el~~~~~~----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~ 337 (486)
T COG0380 266 SV---Q-EKVLELKAELGR----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQAL 337 (486)
T ss_pred ch---h-hHHHHHHHHhcC----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHH
Confidence 00 0 112344555432 367899999999999999999999999862 5666666643 33445556
Q ss_pred HHhhh
Q 012874 449 YTFIM 453 (454)
Q Consensus 449 ~~~~~ 453 (454)
...|+
T Consensus 338 ~~~i~ 342 (486)
T COG0380 338 RLQIE 342 (486)
T ss_pred HHHHH
Confidence 55554
No 110
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.89 E-value=0.063 Score=54.88 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=32.1
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCccc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK 132 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~ 132 (454)
|||++=... +| --.+...+.++|.++||+|.|.+..++...
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~~~~ 41 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKDETE 41 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccchHH
Confidence 788886553 22 356778999999999999999999887643
No 111
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.86 E-value=0.0052 Score=67.93 Aligned_cols=215 Identities=18% Similarity=0.230 Sum_probs=105.6
Q ss_pred EEEEeCCCchhHHHHHH-HHhccCCCCC-------CCCeEEEEEeCCcccCC--CCccccccCCCCc----------ccc
Q 012874 230 VVFVANDWHTSLIPCYL-KTMYKPKGMY-------KSAKVVFCIHNIAYQGR--FAFEDFGLLNLPA----------QFK 289 (454)
Q Consensus 230 ~VIH~h~w~ta~~~~~l-~~~~~~~~~~-------~~~pvV~TiH~~~~~g~--~~~~~~~~l~lp~----------~~~ 289 (454)
++||.||-|.+++.+-+ +......|+- ...-.+||.|+..+.|. |+.+.+..+ ||. ++.
T Consensus 216 ~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~-Lpr~~~ii~ein~~f~ 294 (713)
T PF00343_consen 216 VVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERY-LPRHLEIIYEINRRFL 294 (713)
T ss_dssp EEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHH-SHHHHHHHHHHHHHHH
T ss_pred eEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHH-ChHHHHHHHHHhHHHH
Confidence 48999999987665433 3332222220 12348999999977654 443322211 110 000
Q ss_pred --------------cccccccCCCCCcccchHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcC
Q 012874 290 --------------SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355 (454)
Q Consensus 290 --------------~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpN 355 (454)
..+..++. -....++|...++..|..|..||.-..+-+.+ .-+. .... +-+.++.-|.|
T Consensus 295 ~~~~~~~~~d~~~~~~l~ii~~----~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~-~~f~-~f~~-l~P~kf~nvTN 367 (713)
T PF00343_consen 295 DELRRKYPGDEDQIRRLSIIEE----GNSKRFRMANLALRGSHSVNGVSKLHGEVLKQ-MVFK-DFYE-LWPEKFGNVTN 367 (713)
T ss_dssp HHHHHHSTT-HHHHHHHSSEET----SSSCEEEHHHHHHHCESEEEESSHHHHHHHHH-TTTH-HHHH-HSGGGEEE---
T ss_pred HHHHHHhcCcchhhhhcccccc----cchhhcchhHHHHHhcccccchHHHHHHHHHH-HHhh-hhhh-cCCceeecccc
Confidence 00000100 01124677778999999999999876665543 1110 1111 22467999999
Q ss_pred CCcCCCCCCCcc--------cccccccC--ccc----------------cccc----hHHHHHHHHHHhCCCCCCCCcEE
Q 012874 356 GMDVQEWNPLTD--------KYIGVKYD--AST----------------VMDA----KPLLKEALQAEVGLPVDRNIPVI 405 (454)
Q Consensus 356 GiD~~~f~p~~~--------~~~~~~~~--~~~----------------~~~~----k~~~k~~lr~~~Gl~~~~~~~lI 405 (454)
||....|--... +++...+. ++. +.+. |....+.++++.|+..+++...+
T Consensus 368 GVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfd 447 (713)
T PF00343_consen 368 GVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFD 447 (713)
T ss_dssp -B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEE
T ss_pred CccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhh
Confidence 999999953211 12221111 110 1112 22233344567788878888889
Q ss_pred EEEcCCccccCHHHH-H---HHHhhccc------CCcEEEEEecCCccch--HHHHHhh
Q 012874 406 GFIGRLEEQKGSDIL-A---AAIPHFIK------ENVQIIVLVSITIRNY--STLYTFI 452 (454)
Q Consensus 406 lfvGRL~~qKG~d~L-i---eA~~~l~~------~~v~lvIvG~G~~~~~--~~l~~~~ 452 (454)
+++-|+.++|...++ + +-..++.+ .++++|+.|...+.+. .++-++|
T Consensus 448 v~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I 506 (713)
T PF00343_consen 448 VQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLI 506 (713)
T ss_dssp EEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHH
T ss_pred hhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHH
Confidence 999999999999984 3 33333433 2689999998766433 3454444
No 112
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.20 E-value=0.18 Score=51.20 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=60.9
Q ss_pred hhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHh
Q 012874 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (454)
Q Consensus 315 ~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~ 394 (454)
..||-|++.|.+....+.+ +....++.+|+...+++.+ .+..
T Consensus 221 ~~ad~vm~NssWT~nHI~q----------iW~~~~~~iVyPPC~~e~l----------------------------ks~~ 262 (465)
T KOG1387|consen 221 SKADIVMTNSSWTNNHIKQ----------IWQSNTCSIVYPPCSTEDL----------------------------KSKF 262 (465)
T ss_pred ccceEEEecchhhHHHHHH----------HhhccceeEEcCCCCHHHH----------------------------HHHh
Confidence 5689999999998888774 2334677887777776643 1222
Q ss_pred CCCCCCCCcEEEEEcCCccccCHH-HHHHHHhhccc------CCcEEEEEecC
Q 012874 395 GLPVDRNIPVIGFIGRLEEQKGSD-ILAAAIPHFIK------ENVQIIVLVSI 440 (454)
Q Consensus 395 Gl~~~~~~~lIlfvGRL~~qKG~d-~LieA~~~l~~------~~v~lvIvG~G 440 (454)
+. .+.+.+.++++|.+.|+|+.. +=++|+-.... .+++|+|+|+-
T Consensus 263 ~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGSc 314 (465)
T KOG1387|consen 263 GT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSC 314 (465)
T ss_pred cc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEecc
Confidence 22 234678899999999999999 44455544332 26899999974
No 113
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.047 Score=52.27 Aligned_cols=91 Identities=29% Similarity=0.465 Sum_probs=65.7
Q ss_pred hCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhC
Q 012874 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (454)
Q Consensus 316 ~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~G 395 (454)
..+.+++.|+.....+.. .. ...++..++|++|...+.+.. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~---------------------------~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEA---LG-------VPNKIVVIPNGIDTEKFAPAR---------------------------IG 192 (381)
T ss_pred cccEEEECCHHHHHHHHH---hC-------CCCCceEecCCcCHHHcCccc---------------------------cC
Confidence 478899999876444432 11 123689999999998776420 11
Q ss_pred CCCCCCCcEEEEEcCCccccCHHHHHHHHhhcccC--CcEEEEEecCCcc
Q 012874 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLVSITIR 443 (454)
Q Consensus 396 l~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~--~v~lvIvG~G~~~ 443 (454)
+..+.....++++||+.+.||++.+++++..+.+. +++++++|.|+..
T Consensus 193 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 242 (381)
T COG0438 193 LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER 242 (381)
T ss_pred CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc
Confidence 22111136899999999999999999999998764 3899999999863
No 114
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.45 Score=48.48 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=96.9
Q ss_pred CCCEEEEeCCCch--hHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCccc
Q 012874 227 GEDVVFVANDWHT--SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (454)
Q Consensus 227 ~pD~VIH~h~w~t--a~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~ 304 (454)
.+| +|-.++.++ .++.|++-.. ..+++.|+-+||..|.-.... .+|.-..+.
T Consensus 103 ~~~-~ilvQNPP~iPtliv~~~~~~------l~~~KfiIDWHNy~Ysl~l~~----~~g~~h~lV--------------- 156 (444)
T KOG2941|consen 103 PPD-IILVQNPPSIPTLIVCVLYSI------LTGAKFIIDWHNYGYSLQLKL----KLGFQHPLV--------------- 156 (444)
T ss_pred CCc-EEEEeCCCCCchHHHHHHHHH------HhcceEEEEehhhHHHHHHHh----hcCCCCchH---------------
Confidence 799 888888664 3344555433 379999999999876310000 011000010
Q ss_pred chH-HHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCC-----CcCCC----CCCCccccccccc
Q 012874 305 RKI-NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-----MDVQE----WNPLTDKYIGVKY 374 (454)
Q Consensus 305 ~~~-~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNG-----iD~~~----f~p~~~~~~~~~~ 374 (454)
... ..++..-+.||.-.+|+..+.+++.+ .+|. .+..+.+.- .+.++ |-+-... ...|
T Consensus 157 ~l~~~~E~~fgk~a~~nLcVT~AMr~dL~q--nWgi--------~ra~v~YDrPps~~~~l~~~H~lf~~l~~d--~~~f 224 (444)
T KOG2941|consen 157 RLVRWLEKYFGKLADYNLCVTKAMREDLIQ--NWGI--------NRAKVLYDRPPSKPTPLDEQHELFMKLAGD--HSPF 224 (444)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHH--hcCC--------ceeEEEecCCCCCCCchhHHHHHHhhhccc--cchh
Confidence 112 23444557799999999999999985 4553 133443321 11111 2111100 0011
Q ss_pred CccccccchHHHHHHHHHHhC--C-CCCCCCc-EEEEEcCCccccCHHHHHHHHhhccc---------CCcEEEEEecCC
Q 012874 375 DASTVMDAKPLLKEALQAEVG--L-PVDRNIP-VIGFIGRLEEQKGSDILAAAIPHFIK---------ENVQIIVLVSIT 441 (454)
Q Consensus 375 ~~~~~~~~k~~~k~~lr~~~G--l-~~~~~~~-lIlfvGRL~~qKG~d~LieA~~~l~~---------~~v~lvIvG~G~ 441 (454)
.+. ..+++...+.++-++.. . ...+..| +++..--++|...+.+|++|+...-+ ..+-++|-|.||
T Consensus 225 ~ar-~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP 303 (444)
T KOG2941|consen 225 RAR-EPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP 303 (444)
T ss_pred hhc-ccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc
Confidence 111 12345555555555443 1 1112344 56666778999999999999984321 146778889998
Q ss_pred cc
Q 012874 442 IR 443 (454)
Q Consensus 442 ~~ 443 (454)
.+
T Consensus 304 lk 305 (444)
T KOG2941|consen 304 LK 305 (444)
T ss_pred hh
Confidence 54
No 115
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.9 Score=46.94 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=24.3
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCe-EEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR-VMTI 124 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~Ghe-V~Vi 124 (454)
|+|++.+. .+||==.....|+++|.++|++ |.++
T Consensus 1 ~~ivl~~g------GTGGHv~pAlAl~~~l~~~g~~~v~~~ 35 (357)
T COG0707 1 KKIVLTAG------GTGGHVFPALALAEELAKRGWEQVIVL 35 (357)
T ss_pred CeEEEEeC------CCccchhHHHHHHHHHHhhCccEEEEe
Confidence 45555543 4677777778999999999996 4444
No 116
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=95.74 E-value=0.11 Score=55.32 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCc
Q 012874 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIA 269 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~ 269 (454)
.|| +||.|..-+++++.++... .++|.++|-|.+.
T Consensus 401 ~Pd-lI~GnYsDgnlvA~LLs~~-------lgv~~~~iaHsLe 435 (550)
T PF00862_consen 401 KPD-LIIGNYSDGNLVASLLSRK-------LGVTQCFIAHSLE 435 (550)
T ss_dssp --S-EEEEEHHHHHHHHHHHHHH-------HT-EEEEE-SS-H
T ss_pred CCc-EEEeccCcchHHHHHHHhh-------cCCceehhhhccc
Confidence 799 9999977778888877765 5999999999984
No 117
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=95.11 E-value=0.025 Score=48.75 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=32.7
Q ss_pred CcEEEEEcCCccccCHHHHHH-HHhhccc--CCcEEEEEecCCc
Q 012874 402 IPVIGFIGRLEEQKGSDILAA-AIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 402 ~~lIlfvGRL~~qKG~d~Lie-A~~~l~~--~~v~lvIvG~G~~ 442 (454)
.++|++.|++.+.||++.|++ |++++.+ .+++|+|+|.+++
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~ 45 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD 45 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH
Confidence 468999999999999999999 9988876 3799999999876
No 118
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=93.71 E-value=0.38 Score=47.64 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=37.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|+|++|+...+|+ ..||+..-+.+|.++|-+.-+.|..+++..
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 8999999999997 579999999999999988777777777664
No 119
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.68 E-value=6.9 Score=39.57 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCccc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK 132 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~ 132 (454)
|||++=... +| --.+...|-..|.++||+|.+-|..++...
T Consensus 1 mkVwiDI~n-~~------hvhfFk~lI~elekkG~ev~iT~rd~~~v~ 41 (346)
T COG1817 1 MKVWIDIGN-PP------HVHFFKNLIWELEKKGHEVLITCRDFGVVT 41 (346)
T ss_pred CeEEEEcCC-cc------hhhHHHHHHHHHHhCCeEEEEEEeecCcHH
Confidence 566664432 23 345778999999999999999998887644
No 120
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=89.91 E-value=1.8 Score=35.56 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCchhHHH--HHHHHhccCCCCCCCCeEEEEEeCC
Q 012874 227 GEDVVFVANDWHTSLIP--CYLKTMYKPKGMYKSAKVVFCIHNI 268 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~--~~l~~~~~~~~~~~~~pvV~TiH~~ 268 (454)
+.| |||.|...+.+.. .+..+ ..+.++|+|-|++
T Consensus 50 ~I~-IVHgH~a~S~l~hE~i~hA~-------~mGlktVfTDHSL 85 (90)
T PF08288_consen 50 RID-IVHGHQAFSTLCHEAILHAR-------TMGLKTVFTDHSL 85 (90)
T ss_pred Cee-EEEeehhhhHHHHHHHHHHH-------hCCCcEEeecccc
Confidence 799 9999987665543 22222 2689999999986
No 121
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=89.24 E-value=13 Score=38.44 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=23.2
Q ss_pred hhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcC-CCcCCC
Q 012874 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN-GMDVQE 361 (454)
Q Consensus 315 ~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpN-GiD~~~ 361 (454)
+.||...+.++...+.+.+ -|.+ +.++.++-| ++|.-.
T Consensus 143 ~la~l~f~~t~~~~~~L~~---eg~~------~~~i~~tG~~~iD~l~ 181 (365)
T TIGR03568 143 KLSHLHFVATEEYRQRVIQ---MGED------PDRVFNVGSPGLDNIL 181 (365)
T ss_pred HHHhhccCCCHHHHHHHHH---cCCC------CCcEEEECCcHHHHHH
Confidence 3467777788887777764 2321 256766666 666443
No 122
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=86.57 E-value=3.6 Score=37.42 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.9
Q ss_pred hCCceeccCHHHHHHHHcCCCCCccc
Q 012874 316 ESDMVLTVSPHYAQELVSGEDKGVEL 341 (454)
Q Consensus 316 ~ad~VitVS~~~a~~l~~~~~~g~~l 341 (454)
.+|..++.|+..++++.+ +|++.
T Consensus 137 ~~D~y~Vase~~~~~l~~---~Gi~~ 159 (169)
T PF06925_consen 137 GVDRYFVASEEVKEELIE---RGIPP 159 (169)
T ss_pred CCCEEEECCHHHHHHHHH---cCCCh
Confidence 579999999999999984 66543
No 123
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=83.52 E-value=1.5 Score=41.39 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=29.3
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||+....-. -+.-+..|.++|.+.||+|.|++|...+
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-------DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-------TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 89999877531 2345678899997788999999998664
No 124
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=81.77 E-value=15 Score=37.60 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCCEEEEeC-CCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccc
Q 012874 227 GEDVVFVAN-DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (454)
Q Consensus 227 ~pD~VIH~h-~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~ 305 (454)
+|| +|.++ |-.+++.++++... .++| |.++|.- ....+. ..|.|++..
T Consensus 67 ~Pd-~Vlv~GD~~~~la~alaA~~-------~~ip-v~HieaG----lRs~d~--~~g~~de~~---------------- 115 (346)
T PF02350_consen 67 KPD-AVLVLGDRNEALAAALAAFY-------LNIP-VAHIEAG----LRSGDR--TEGMPDEIN---------------- 115 (346)
T ss_dssp T-S-EEEEETTSHHHHHHHHHHHH-------TT-E-EEEES---------S-T--TSSTTHHHH----------------
T ss_pred CCC-EEEEEcCCchHHHHHHHHHH-------hCCC-EEEecCC----CCcccc--CCCCchhhh----------------
Confidence 799 55555 56666666666653 6999 6667652 111100 012232221
Q ss_pred hHHHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcC-CCcCCCCCCCcccccccccCccccccchH
Q 012874 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN-GMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (454)
Q Consensus 306 ~~~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpN-GiD~~~f~p~~~~~~~~~~~~~~~~~~k~ 384 (454)
+ +..-+-||.-.+.++.+++.|.+ .|.+ +++|.++-| ++|.-... ++
T Consensus 116 --R--~~i~~la~lhf~~t~~~~~~L~~---~G~~------~~rI~~vG~~~~D~l~~~-------------------~~ 163 (346)
T PF02350_consen 116 --R--HAIDKLAHLHFAPTEEARERLLQ---EGEP------PERIFVVGNPGIDALLQN-------------------KE 163 (346)
T ss_dssp --H--HHHHHH-SEEEESSHHHHHHHHH---TT--------GGGEEE---HHHHHHHHH-------------------HH
T ss_pred --h--hhhhhhhhhhccCCHHHHHHHHh---cCCC------CCeEEEEChHHHHHHHHh-------------------HH
Confidence 0 12234588889999999998885 3432 367777766 34432111 00
Q ss_pred HHHHHH-HHHh-CCCCCCCCcEEE-EEcCCcc---ccCHHHHHHHHhhcccC-CcEEEEEecCCccchHHHHHhh
Q 012874 385 LLKEAL-QAEV-GLPVDRNIPVIG-FIGRLEE---QKGSDILAAAIPHFIKE-NVQIIVLVSITIRNYSTLYTFI 452 (454)
Q Consensus 385 ~~k~~l-r~~~-Gl~~~~~~~lIl-fvGRL~~---qKG~d~LieA~~~l~~~-~v~lvIvG~G~~~~~~~l~~~~ 452 (454)
...+.+ ...+ ... ..++++ ..-|.+. ......+.+++..+.+. ++++|+.....++....+.+.|
T Consensus 164 ~~~~~~~~~~i~~~~---~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l 235 (346)
T PF02350_consen 164 EIEEKYKNSGILQDA---PKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL 235 (346)
T ss_dssp TTCC-HHHHHHHHCT---TSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH
T ss_pred HHhhhhhhHHHHhcc---CCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh
Confidence 000001 1111 012 344444 3444433 34466777777777664 8999988876555555554443
No 125
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=81.58 E-value=20 Score=35.45 Aligned_cols=36 Identities=31% Similarity=0.297 Sum_probs=26.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||+|..... .-|=-.....|+++| +||+|++++..
T Consensus 1 MkIl~~v~~~-----G~GH~~R~~~la~~L--rg~~v~~~~~~ 36 (318)
T PF13528_consen 1 MKILFYVQGH-----GLGHASRCLALARAL--RGHEVTFITSG 36 (318)
T ss_pred CEEEEEeCCC-----CcCHHHHHHHHHHHH--ccCceEEEEcC
Confidence 8999997641 234445566788889 59999999965
No 126
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=80.68 E-value=9.7 Score=38.21 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=27.0
Q ss_pred eEEEEecccCCCCCCC-cHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 86 NILFVGTEVAPWSKTG-GLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 86 kIl~vs~e~~P~~~~G-Glg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||++... .+| |=-.....++++|.+ ||+|.+++..
T Consensus 1 ril~~~~------g~G~GH~~r~~ala~~L~~-g~ev~~~~~~ 36 (321)
T TIGR00661 1 KILYSVC------GEGFGHTTRSVAIGEALKN-DYEVSYIASG 36 (321)
T ss_pred CEEEEEe------ccCccHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 4566543 357 888888899999999 9999999743
No 127
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=79.96 E-value=2.5 Score=43.45 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=28.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|||+|++. | ..|=+.- +..|+++|+++||+|+++++..
T Consensus 1 mrIl~~~~---p--~~GHv~P-~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTI---G--SRGDVQP-LVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeC---C--CcchHHH-HHHHHHHHHHCCCeEEEeeCHh
Confidence 89999975 2 1233444 4589999999999999999763
No 128
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=79.57 E-value=2.5 Score=36.74 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=26.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|||+|+.. |+...---.+....|..+.+++||+|.++.|..
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 89999965 322222234566789999999999999998863
No 129
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=74.02 E-value=4.5 Score=34.84 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.4
Q ss_pred HhhhhHHHHHCCCeEEEEEec
Q 012874 107 LGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 107 v~~La~aL~~~GheV~Vi~p~ 127 (454)
...|+++|.++||||++.++.
T Consensus 15 ~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEETG
T ss_pred HHHHHHHHhccCCeEEEeecc
Confidence 458899999999999998865
No 130
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=68.95 E-value=1e+02 Score=32.17 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCCCCCcEEEEE-cCCcc-ccCHHHHHHHHhhccc--CCcEEEEEec
Q 012874 387 KEALQAEVGLPVDRNIPVIGFI-GRLEE-QKGSDILAAAIPHFIK--ENVQIIVLVS 439 (454)
Q Consensus 387 k~~lr~~~Gl~~~~~~~lIlfv-GRL~~-qKG~d~LieA~~~l~~--~~v~lvIvG~ 439 (454)
|++.|+++|++.++. .+.+.. +|-.| ..-...+.+|+..+.+ ++.++++-=.
T Consensus 175 r~~ar~~l~~~~~~~-~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~ 230 (381)
T COG0763 175 REAAREKLGIDADEK-TLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV 230 (381)
T ss_pred HHHHHHHhCCCCCCC-eEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 456888999987432 233333 55555 6668889999998875 3788877543
No 131
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=66.09 E-value=8.2 Score=36.68 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=26.4
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||.+| ||.|.+=..|+..|++.||+|+++.+.
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 778777 566666678999999999999987644
No 132
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=62.64 E-value=12 Score=40.74 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=34.1
Q ss_pred cEEEEEc--CCccccCHHHHHHHHhhccc--CCcEEEEEecCCc
Q 012874 403 PVIGFIG--RLEEQKGSDILAAAIPHFIK--ENVQIIVLVSITI 442 (454)
Q Consensus 403 ~lIlfvG--RL~~qKG~d~LieA~~~l~~--~~v~lvIvG~G~~ 442 (454)
..+++++ || ++|-++.+|+|+.++.+ ++++|.+.|.|.+
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~ 362 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNND 362 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc
Confidence 3577888 99 99999999999999966 4899999998864
No 133
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=60.38 E-value=12 Score=35.35 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=26.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|||++|+.. |=+| ..+.++..+|||+|+.|+...
T Consensus 1 mKIaiIgAs-------G~~G---s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGAS-------GKAG---SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecC-------chhH---HHHHHHHHhCCCeeEEEEeCh
Confidence 899999763 4444 467888899999999999664
No 134
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=59.02 E-value=19 Score=31.65 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=32.0
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||+.|..... +.|-...++..+.+.+.+.|++|.++-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987543 35778888888889999999999999765
No 135
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=58.93 E-value=7.8 Score=41.94 Aligned_cols=39 Identities=31% Similarity=0.257 Sum_probs=29.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
-||+.+...+ .+.--.++..++++|+++||+|++++|..
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4677664321 23456788899999999999999999864
No 136
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=56.76 E-value=2.2e+02 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCcEE---EEEcCCccccCHHHHHHHHhhcccC-CcEEEEEec
Q 012874 401 NIPVI---GFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLVS 439 (454)
Q Consensus 401 ~~~lI---lfvGRL~~qKG~d~LieA~~~l~~~-~v~lvIvG~ 439 (454)
....+ +|+||.+-.||+-.+++--++.++. +..-++-|-
T Consensus 179 se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~Gi 221 (355)
T PF11440_consen 179 SEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGI 221 (355)
T ss_dssp GGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE--
T ss_pred HhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhh
Confidence 44555 8999999999999999999988875 777788773
No 137
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=56.02 E-value=22 Score=33.61 Aligned_cols=37 Identities=24% Similarity=0.071 Sum_probs=29.9
Q ss_pred CCceEEEEecccCCCCCCCcHhHHH--hhhhHHHHHCCCeEEEEEec
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v--~~La~aL~~~GheV~Vi~p~ 127 (454)
+++||++-. +||.+.+- .+|.+.|.+.||+|.++.-.
T Consensus 4 ~~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 457777653 58888885 79999999999999999744
No 138
>PLN00016 RNA-binding protein; Provisional
Probab=54.83 E-value=22 Score=36.59 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=29.7
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.|||+.+++. .||.|.+=..|++.|.++||+|++++..
T Consensus 52 ~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 4788877553 4666777678899999999999999865
No 139
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=54.30 E-value=1.3e+02 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=17.7
Q ss_pred hHHHHHHHhhhCCceeccCHHHHHHHH
Q 012874 306 KINWMKAGILESDMVLTVSPHYAQELV 332 (454)
Q Consensus 306 ~~~~~k~~i~~ad~VitVS~~~a~~l~ 332 (454)
.+|+. ....||+|+..|.+-.+...
T Consensus 111 ~~ni~--saLaAD~v~FNS~~nr~sFL 135 (168)
T PF12038_consen 111 MNNIY--SALAADRVVFNSAFNRDSFL 135 (168)
T ss_pred HHHHH--HHHhceeeeecchhhHHHHH
Confidence 34544 34569999999998777654
No 140
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=53.42 E-value=27 Score=30.58 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=30.0
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeE-EEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV-~Vi~ 125 (454)
||++++... +|+ .+-.+.-..+++.++.+.||+| .|+.
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 899998775 674 3556678889999999999994 6665
No 141
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=51.22 E-value=23 Score=35.57 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.1
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+..|||++++. |++|.+ ++..|++.||+|+++...
T Consensus 3 ~~~m~I~IiG~--------GaiG~~---lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGT--------GAIGGF---YGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECC--------CHHHHH---HHHHHHHCCCeEEEEEeC
Confidence 34699999853 778876 455688899999999864
No 142
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=50.07 E-value=17 Score=36.74 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=31.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|||+|+.. |+....--.+....|..+.+++||+|.++.|..
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999964 433334445667789999999999999999873
No 143
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=49.75 E-value=23 Score=34.99 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
++||||.....-.. +.-+..|.++|.+.| +|.|++|...+
T Consensus 4 ~~M~ILltNDDGi~-------a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGIE-------GEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCCC-------CHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 46999987765322 233567778888888 89999998654
No 144
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=49.65 E-value=18 Score=38.00 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=28.1
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.|||++++.- .=|--.-...|+++|.++||+|+.+|..
T Consensus 1 ~mkil~~~~~------~~Ghv~p~~aL~~eL~~~gheV~~~~~~ 38 (406)
T COG1819 1 RMKILFVVCG------AYGHVNPCLALGKELRRRGHEVVFASTG 38 (406)
T ss_pred CceEEEEecc------ccccccchHHHHHHHHhcCCeEEEEeCH
Confidence 4899999652 1233334467888999999999999964
No 145
>PRK09271 flavodoxin; Provisional
Probab=48.19 E-value=32 Score=30.96 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=30.3
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
|||+++-. +.+|-.+.+...|+.+|.+.|++|.+.-
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 78888744 3579999999999999999999987664
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=47.78 E-value=41 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCCEEEEeCCCchhHHHHHHHHhccCCCCCCCCeEEE
Q 012874 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 263 (454)
Q Consensus 227 ~pD~VIH~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~ 263 (454)
+|| ||.++...+++..+++....+--+. .++|+|+
T Consensus 92 rPd-vii~nGpg~~vp~~~~~~l~~~~~~-~~~kiIy 126 (170)
T PF08660_consen 92 RPD-VIISNGPGTCVPVCLAAKLLRLLGL-RGSKIIY 126 (170)
T ss_pred CCC-EEEEcCCceeeHHHHHHHHHHHhhc-cCCcEEE
Confidence 899 8999998877766666554321111 3788877
No 147
>PRK09739 hypothetical protein; Provisional
Probab=45.75 E-value=46 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|+.|||++|... |. ..|=....+..+..++.+.||+|+++-..
T Consensus 1 ~~mmkiliI~~s--p~-~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAH--PR-HDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcC--CC-CCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 346999999875 42 22335667777888888899999988543
No 148
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=45.46 E-value=40 Score=29.16 Aligned_cols=36 Identities=19% Similarity=0.035 Sum_probs=25.3
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||++..+. ++....+.++.++|.+.|++|.++.-.
T Consensus 1 k~i~l~vtG-------s~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG-------SIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S-------SGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 678887652 223333789999999999999999744
No 149
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=45.24 E-value=28 Score=34.00 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=28.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||+....- =...-+..|.++|.+.| +|.|++|...+
T Consensus 1 M~ILltNDDG-------i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDDG-------IHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCCC-------CCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 8999776642 22345678888899888 99999998654
No 150
>CHL00194 ycf39 Ycf39; Provisional
Probab=43.76 E-value=31 Score=34.45 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=21.5
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.|..=..|+++|.++||+|.+++..
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 555666567888999999999999854
No 151
>PRK06756 flavodoxin; Provisional
Probab=42.56 E-value=44 Score=29.41 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=30.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
|||+.|-. +.+|-.+.++..++.+|.+.|++|.++-.
T Consensus 2 mkv~IiY~-----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFA-----SMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEE-----CCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 67877743 35799999999999999999999987754
No 152
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=40.97 E-value=9.8 Score=40.55 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=22.2
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
+.=-..+..|+++|+++||+|++++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4456778999999999999999999864
No 153
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=40.80 E-value=33 Score=34.27 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=26.2
Q ss_pred ceEEEEecccCCCCCCCcHh--HHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg--~~v~~La~aL~~~GheV~Vi~ 125 (454)
|||++.+ | ||.| +....|+.+|+++|.+|.+|=
T Consensus 1 m~ia~~g-------K-GGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 1 MKLAVYG-------K-GGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred CeEEEEC-------C-CCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7877764 2 6666 567899999999999998884
No 154
>PRK05246 glutathione synthetase; Provisional
Probab=40.42 E-value=28 Score=35.03 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=32.0
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|||+|+.. |+.....-.+....|..+.+++||+|.++.|..
T Consensus 2 ~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 2 MKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred ceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999964 444444445666789999999999999999873
No 155
>PRK10037 cell division protein; Provisional
Probab=40.14 E-value=44 Score=32.24 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=26.3
Q ss_pred ceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHCCCeEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~GheV~Vi 124 (454)
|||+-|... | ||.|. ....|+.+|+++|++|.+|
T Consensus 1 ~~~iav~n~-----K-GGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGV-----R-GGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecC-----C-CCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 666666553 3 77665 5689999999999999998
No 156
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=40.00 E-value=37 Score=35.96 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=28.4
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
.++|||+.. ||.|-+=..|.+.|.++||+|.++..
T Consensus 118 ~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 118 RKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred cCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 346998765 77777778899999999999998863
No 157
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=39.87 E-value=46 Score=32.53 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=26.5
Q ss_pred ceEEEEecccCCCCCCCc--HhHHHhhhhHHHHHCCCeEEEE
Q 012874 85 LNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GG--lg~~v~~La~aL~~~GheV~Vi 124 (454)
||++.|.. + .|| ..++..+|+.+|++.|..|.+|
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67777654 2 355 4568899999999999999988
No 158
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=38.77 E-value=41 Score=34.55 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
++|||++. ||.|-+=..|++.|.++||+|..+..
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 46898865 66777778899999999999999874
No 159
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=38.48 E-value=38 Score=33.32 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=27.1
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||.....- =-..-+..|+++|. .+++|+|++|...+
T Consensus 1 mrILlTNDDG-------i~a~Gi~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDDG-------IHAPGIRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCCc-------cCCHHHHHHHHHHh-hCCCEEEEccCCCC
Confidence 8898876652 12233456777777 88999999998654
No 160
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=38.15 E-value=27 Score=34.93 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=27.3
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEEecCC
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~ 129 (454)
.+||.|.+=..|...|.+.||+|++++.+..
T Consensus 3 iTGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 3 ITGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred EeccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 3799999999999999999999999997643
No 161
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.08 E-value=44 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=25.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||+.+ ||.+. -..|++.|.++||+|.+.+..
T Consensus 1 m~ILvl----------GGT~e-gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLM----------GGTVD-SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEE----------echHH-HHHHHHHHHhCCCeEEEEEcc
Confidence 677776 77776 789999999999999887643
No 162
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=37.70 E-value=42 Score=33.05 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=26.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||.....-.. .-| +..|.++|.+ +|+|+|++|...+
T Consensus 1 M~ILvtNDDGi~---apG----l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGIN---AEG----INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCCC---Chh----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 899888776322 223 5677778865 6799999998654
No 163
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=36.96 E-value=43 Score=32.95 Aligned_cols=32 Identities=41% Similarity=0.700 Sum_probs=24.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||++++. |.+| ..++..|++.||+|+++..+
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 78888743 6566 45667788899999999864
No 164
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=36.77 E-value=44 Score=32.93 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=26.1
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||+....-. ..-| +..|.++|.+ +|+|.|++|...+
T Consensus 1 M~ILlTNDDGi---~a~G----i~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI---TSPG----IIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC---CCHH----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 88888776532 1223 4567777765 5799999998665
No 165
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.99 E-value=53 Score=32.85 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=25.9
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.+|||.+++. |.+=..++..|.+.||+|+++...
T Consensus 3 ~~m~I~iiG~-----------G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGA-----------GAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECc-----------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4699999843 444457888899999999988754
No 166
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.99 E-value=41 Score=32.17 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=23.8
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEecCC
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~y~ 129 (454)
+|.|..=..|+..|++.||||++.+.+.+
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 56666667899999999999999976643
No 167
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=35.65 E-value=70 Score=29.60 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.4
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
.||++.|+.-- ..-|-......|+.+|+++|++|.+|=
T Consensus 16 ~~kvI~v~s~k----gG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 16 EIKVLLITSVK----PGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CCcEEEEecCC----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 37888886631 123456689999999999999998883
No 168
>PRK08309 short chain dehydrogenase; Provisional
Probab=35.54 E-value=56 Score=30.13 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=20.0
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.| +...+++.|+++|++|.+++.+
T Consensus 7 GGtG-~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 7 GGTG-MLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CcCH-HHHHHHHHHHHCcCEEEEEECC
Confidence 5555 3466999999999999988643
No 169
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.46 E-value=45 Score=32.36 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=24.9
Q ss_pred ceEEEEecccCCCCCCCcHh--HHHhhhhHHHHHCCCeEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg--~~v~~La~aL~~~GheV~Vi 124 (454)
|+|++. . | ||.| +...+|+.+|+++|++|.+|
T Consensus 1 ~~i~~~-g------K-GGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVY-G------K-GGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEE-c------C-CcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 666665 2 2 7766 55689999999999999888
No 170
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=35.42 E-value=45 Score=33.42 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=26.3
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.|||++++ .|++|.+... .|++.|++|+++...
T Consensus 2 ~m~I~IiG--------aGaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG--------AGSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEEC--------CCHHHHHHHH---HHHhCCCCeEEEEec
Confidence 48999985 4888887554 477889999999875
No 171
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=35.38 E-value=59 Score=28.36 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi 124 (454)
|||+++-. +.+|-.+.++..|+..|.+.|++|.++
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEec
Confidence 77777743 368999999999999999999998743
No 172
>PRK08105 flavodoxin; Provisional
Probab=34.86 E-value=57 Score=29.10 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
.+|-.+.+...|+..|.+.|++|.++..
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 5799999999999999999999998753
No 173
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=34.64 E-value=1.2e+02 Score=34.41 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=54.4
Q ss_pred CCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhc
Q 012874 348 TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHF 427 (454)
Q Consensus 348 ~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~~~lIlfvGRL~~qKG~d~LieA~~~l 427 (454)
..+..+|=|+|...|.-... . ..-..-...++..+ .+..+|+.+=|+..-||...=+.|+.++
T Consensus 239 ~~v~~~pigid~~r~v~~~~-----------~-~~~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~ 301 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLE-----------L-PYVGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQF 301 (732)
T ss_pred eeeeecccccchHHhhcccc-----------c-hhHHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHH
Confidence 45778899999988743210 0 00111223344333 2677999999999999998888888888
Q ss_pred ccC------CcEEEEEe---cCCccchHHHHHhh
Q 012874 428 IKE------NVQIIVLV---SITIRNYSTLYTFI 452 (454)
Q Consensus 428 ~~~------~v~lvIvG---~G~~~~~~~l~~~~ 452 (454)
+.+ .+.++.+. .++...+++++..+
T Consensus 302 L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v 335 (732)
T KOG1050|consen 302 LEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCV 335 (732)
T ss_pred HHhChhhhceEEEEEEecCCcccchHHHHHHHHh
Confidence 763 34444443 33444566666544
No 174
>PRK07308 flavodoxin; Validated
Probab=34.51 E-value=63 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=24.1
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
.+|..+.+...++..|.+.|++|.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 479999999999999999999988763
No 175
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=34.26 E-value=48 Score=33.42 Aligned_cols=36 Identities=36% Similarity=0.646 Sum_probs=26.3
Q ss_pred ceEEEEecccCCCCCCCcHhHHHh--hhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLG--GLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~--~La~aL~~~GheV~Vi~p~ 127 (454)
||++|++- -||.|.-.. .+|-+++++|++|-+++-+
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~D 38 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTD 38 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESS
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecC
Confidence 78999865 377776554 4777788999999999855
No 176
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=33.71 E-value=51 Score=32.51 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=23.6
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
|||++++. |++|.. ++..|++.||+|+++..
T Consensus 1 mkI~IiG~--------G~iG~~---~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVGGT---FGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHHHH---HHHHHHHCCCceEEEec
Confidence 78888843 556554 56678889999999986
No 177
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=33.69 E-value=65 Score=29.60 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=30.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
||+|++-+ .+.|-.+.....|+..|.++|++|.+.=
T Consensus 1 Mk~LIlYs-----tr~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYS-----TRDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEe-----cCCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 78888744 2678899999999999999999999874
No 178
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=33.51 E-value=71 Score=29.21 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=32.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|+|+-|+.. +-.|--+.+..|.+.|.++|++|.+|=..
T Consensus 2 ~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 2 MKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 778887652 56889999999999999999999999643
No 179
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=33.51 E-value=54 Score=32.56 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=26.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||+....-.- +.-+..|.++|.+.| +|+|++|...+
T Consensus 1 M~ILlTNDDGi~-------apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGVH-------SPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCCC-------CHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 788887765321 233456777787777 89999998654
No 180
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.94 E-value=63 Score=32.99 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=29.8
Q ss_pred ceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||+|++. -||+|. ....++-.|++.|..|.+++-.
T Consensus 2 ~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 2 TRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred cEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 68888865 399988 8888999999999888888743
No 181
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.87 E-value=52 Score=31.30 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
+||.|.+=..+.++|.++||+|.+++++...
T Consensus 6 ~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~ 36 (275)
T COG0702 6 TGATGFVGGAVVRELLARGHEVRAAVRNPEA 36 (275)
T ss_pred EecccchHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 3666666677889999999999999987543
No 182
>PLN00198 anthocyanidin reductase; Provisional
Probab=32.75 E-value=70 Score=31.97 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=19.9
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.|-.=..|+++|.++|++|.+++..
T Consensus 16 G~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 16 GGTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEECC
Confidence 444555556888999999999877644
No 183
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.53 E-value=82 Score=27.06 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=31.4
Q ss_pred ceEEEEecccCCCCCCCcHhHHH--hhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v--~~La~aL~~~GheV~Vi~p~y 128 (454)
|||+.|+. .| +|-+..|+ ..|.++-.++||++.|=+-..
T Consensus 3 mkivaVta--cp---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 3 AYLVAVTA--CV---SGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred ceEEEEee--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 89999976 34 68888888 778888888999999887543
No 184
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=32.35 E-value=62 Score=29.24 Aligned_cols=37 Identities=41% Similarity=0.505 Sum_probs=30.6
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
+++||++++. +-+.++..+...+++.|.+|++++|..
T Consensus 1 ~gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TTEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 3678888852 237889999999999999999999975
No 185
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.91 E-value=62 Score=30.35 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=24.0
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.||.++|+. .+||+| ..+++.|.++|++|.++...
T Consensus 5 ~~k~vlItG------~sg~iG---~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITG------ASSGIG---KATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 466666642 134555 56788889999999888743
No 186
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=31.83 E-value=35 Score=29.85 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=24.6
Q ss_pred CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
...|||.+|+. |.+-..|+++|.+.||+|.-+.-+
T Consensus 8 ~~~l~I~iIGa-----------GrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGA-----------GRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECT-----------SCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECC-----------CHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34699999965 334468999999999999888644
No 187
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=31.71 E-value=58 Score=32.42 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=18.5
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
||.|-+=..|++.|.++||+|.++.
T Consensus 7 GatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 7 GGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEe
Confidence 4444444567788999999999885
No 188
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=31.60 E-value=62 Score=31.79 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
||||+....-. -+.-+..|.++|.+. |+|.|++|...+
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 78888776532 122356788888888 699999998654
No 189
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=30.85 E-value=56 Score=33.33 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=33.3
Q ss_pred CceEEEEecccCCCCCCCcHh--HHHhhhhHHHHHCCCeEEEEEecCCcc
Q 012874 84 GLNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPRYDQY 131 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg--~~v~~La~aL~~~GheV~Vi~p~y~~~ 131 (454)
+..|+.|+. ..+||.| -++..|++.|.++|+.|.|++..|+.-
T Consensus 34 ~vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 34 PVPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred CCcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 345666655 2467666 478999999999999999999998753
No 190
>PRK09004 FMN-binding protein MioC; Provisional
Probab=30.42 E-value=77 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
.+|-.+.+...|+..+.++|++|.++.
T Consensus 11 ~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 579999999999999999999999864
No 191
>PLN02206 UDP-glucuronate decarboxylase
Probab=30.24 E-value=66 Score=34.14 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=26.8
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
+.|||+.. ||.|-+=..|++.|.++|++|.++.
T Consensus 118 ~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 56998764 6677777788999999999999875
No 192
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=30.21 E-value=1.1e+02 Score=30.77 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=13.1
Q ss_pred CCCeEEEEEeCCcccCCC
Q 012874 257 KSAKVVFCIHNIAYQGRF 274 (454)
Q Consensus 257 ~~~pvV~TiH~~~~~g~~ 274 (454)
.++++|+.--++.|.|..
T Consensus 91 ~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 91 VGARLVHISTDYVFDGEK 108 (281)
T ss_pred hCCeEEEeecceEecCCC
Confidence 578888877777776643
No 193
>PLN02572 UDP-sulfoquinovose synthase
Probab=30.20 E-value=80 Score=33.44 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.5
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
||.|-+=..|++.|.++|++|.++.
T Consensus 54 GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 54 GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4444444568889999999999874
No 194
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=30.09 E-value=43 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.7
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
++.+|+.|+ .|.+....++.|.+.|++|+||+|..
T Consensus 12 ~~~~vlVvG-----------GG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 12 HNKVVVIIG-----------GGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 356777762 35566788899999999999998764
No 195
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=30.04 E-value=47 Score=29.71 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEecCC
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~y~ 129 (454)
+||.|.+=..+++.|.++||+|++++.+..
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 366666667799999999999999997643
No 196
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=30.00 E-value=62 Score=30.28 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=18.9
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.+-.=..+++.|+++|++|.++..+
T Consensus 8 Ga~g~iG~~l~~~l~~~g~~v~~~~~~ 34 (247)
T PRK09730 8 GGSRGIGRATALLLAQEGYTVAVNYQQ 34 (247)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444444456888999999999876533
No 197
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=29.57 E-value=92 Score=29.97 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=26.8
Q ss_pred ceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~GheV~Vi~ 125 (454)
|||+-|+.. | ||.|. ....|+.+|+++|.+|.++=
T Consensus 1 M~iI~v~n~-----K-GGvGKTT~a~nLA~~la~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSF-----K-GGAGKTTALMGLCAALASDGKRVALFE 37 (231)
T ss_pred CeEEEEECC-----C-CCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 677766553 3 77664 56789999999999998884
No 198
>PLN02778 3,5-epimerase/4-reductase
Probab=29.50 E-value=70 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=24.4
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEE
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi 124 (454)
..|||+.. ||.|..=..|++.|.++||+|++.
T Consensus 8 ~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 8 ATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 35898865 666666677888999999999754
No 199
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=29.45 E-value=75 Score=28.19 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=29.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
|||++|-. +.+|..+.++..++..|.+.|++|.+..
T Consensus 2 ~ki~Ivy~-----S~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 2 MKILIVYG-----SRTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CeEEEEEE-----cCCCcHHHHHHHHHHHhccCCceEEEee
Confidence 67777754 3589999999999999999999995443
No 200
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.43 E-value=3.5e+02 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.8
Q ss_pred CCCCCEEEEeCCCchhHHHHHHHHhc
Q 012874 225 PYGEDVVFVANDWHTSLIPCYLKTMY 250 (454)
Q Consensus 225 ~~~pD~VIH~h~w~ta~~~~~l~~~~ 250 (454)
++.|| ++.+-...++++..++++.+
T Consensus 68 ~~~Pd-l~I~aGrrta~l~~~lkk~~ 92 (329)
T COG3660 68 EQRPD-LIITAGRRTAPLAFYLKKKF 92 (329)
T ss_pred cCCCc-eEEecccchhHHHHHHHHhc
Confidence 45799 77787889999999999874
No 201
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=29.42 E-value=97 Score=30.86 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCCceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHCCCeEEEEE
Q 012874 82 GVGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 82 ~~~MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~GheV~Vi~ 125 (454)
+++|||+-|+ . + ||.|. ...+|+.+|+++|.+|-+|=
T Consensus 1 ~~~~~~iai~-~-----K-GGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 1 MSKLRQIAFY-G-----K-GGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CCcceEEEEE-C-----C-CCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3568877764 1 2 66665 56899999999999999983
No 202
>PRK08655 prephenate dehydrogenase; Provisional
Probab=28.91 E-value=65 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=24.4
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||+++ ||.|.+=..++.+|.+.||+|+++.+.
T Consensus 1 MkI~II----------GG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISII----------GGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEE----------ecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 677777 444555566888889999999888754
No 203
>PLN02427 UDP-apiose/xylose synthase
Probab=28.46 E-value=76 Score=32.53 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHC-CCeEEEEEe
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAP 126 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~-GheV~Vi~p 126 (454)
++|||+.. ||.|-.=..|++.|.++ |++|.++..
T Consensus 13 ~~~~VlVT----------GgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMI----------GAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cCcEEEEE----------CCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 46897764 66666667789999998 599988863
No 204
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=28.44 E-value=77 Score=32.54 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=32.1
Q ss_pred ceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
..|+.|+. ..+||.|. ++..|++.|.++|++|.|++..|+.
T Consensus 56 vPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 56 VPVVVVGN-----VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CCEEEECC-----ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 44555655 24677664 7889999999999999999999986
No 205
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=28.42 E-value=81 Score=31.87 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=28.6
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
.++||++. ||.|-+--.|+..|-.+||+|.++==
T Consensus 26 ~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn 59 (350)
T KOG1429|consen 26 QNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDN 59 (350)
T ss_pred CCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEec
Confidence 35888875 88888888999999999999988743
No 206
>PRK05723 flavodoxin; Provisional
Probab=27.94 E-value=88 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=29.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
|||.++-. +.+|-.+.+...|+..|.+.|++|+++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 56666633 2589999999999999999999998753
No 207
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=27.79 E-value=86 Score=28.11 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=23.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
|||.|| |+|.+=..+++.|.+.||+|.++-+
T Consensus 2 ~~Ig~I-----------GlG~mG~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFI-----------GLGNMGSAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE-------------SHHHHHHHHHHHHTTTEEEEEES
T ss_pred CEEEEE-----------chHHHHHHHHHHHHhcCCeEEeecc
Confidence 677777 3566667899999999999998753
No 208
>PRK05693 short chain dehydrogenase; Provisional
Probab=27.79 E-value=69 Score=30.84 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=24.0
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.++|+. -+||+|. .+++.|+++|++|.+++..
T Consensus 1 mk~vlItG------asggiG~---~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITG------CSSGIGR---ALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 56666644 2467775 6777889999999888754
No 209
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=27.77 E-value=76 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=29.6
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
|||+++-. +.+|-...+...++..|.. |++|.++-.
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 78887743 3689999999999999998 999988753
No 210
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.59 E-value=57 Score=31.50 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=31.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|..++++. +| ..|-.++..+|+++|.+++|+|..+.-.|
T Consensus 1 mpLiIlTG--yP---gsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTG--YP---GSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEec--CC---CCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 45556554 45 57899999999999999999999987654
No 211
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.45 E-value=85 Score=29.29 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=24.8
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
++|+|++++. +||+| ..+++.|.++|++|.++..
T Consensus 5 ~~~~ilItGa-------sg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGG-------SGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCEEEEECC-------CChHH---HHHHHHHHHCCCeEEEEcC
Confidence 4577766543 46676 4688899999999988763
No 212
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.32 E-value=2.6e+02 Score=23.78 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=11.5
Q ss_pred ccCCeEEEcCCCcCC
Q 012874 346 RKTGIKGIVNGMDVQ 360 (454)
Q Consensus 346 ~~~~i~vIpNGiD~~ 360 (454)
+...+.+++.|.+++
T Consensus 24 ~~~G~~vi~lG~~vp 38 (122)
T cd02071 24 RDAGFEVIYTGLRQT 38 (122)
T ss_pred HHCCCEEEECCCCCC
Confidence 346789999998855
No 213
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=27.16 E-value=73 Score=33.04 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
..++|++| ||+|.+=..++..|.+.||+|+++.++
T Consensus 97 ~~~~I~Ii----------GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIV----------GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEE----------cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 34788877 667777788999999999999999754
No 214
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.13 E-value=1.8e+02 Score=30.49 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=28.0
Q ss_pred CCceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHCCCeEEEE
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~GheV~Vi 124 (454)
.+|+|+-|+.. | ||.|. ....|+.+|+.+|++|.+|
T Consensus 119 ~~~~vIav~n~-----K-GGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 119 EHLQVIAVTNF-----K-GGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CCceEEEEEcC-----C-CCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 36788777652 3 66654 5789999999999999888
No 215
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=26.93 E-value=99 Score=28.53 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred ceEEEEecccCCCCCCCcH-hHHHhhhhHHHHHCC-CeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANG-HRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGl-g~~v~~La~aL~~~G-heV~Vi~ 125 (454)
||||+|... |. ..++. ......+..++.+.| ++|+++=
T Consensus 1 mkiLvI~as--p~-~~~S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINAS--PR-PEGSFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE----SS-TTTSHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcC--CC-CccCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 899999875 42 12344 666788889999999 8998884
No 216
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.81 E-value=1.1e+02 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.092 Sum_probs=27.2
Q ss_pred CceEEEEecccCCCCCCCcHh-HHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLG-DVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg-~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.+||++-.+ ||.+ ....++.+.|.+.|++|.+++-+
T Consensus 3 ~krIllgIT--------Gsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAIT--------GASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEe--------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 477877643 4433 45678899999999999999855
No 217
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=26.77 E-value=87 Score=31.77 Aligned_cols=41 Identities=29% Similarity=0.461 Sum_probs=32.1
Q ss_pred ceEEEEecccCCCCCCCcHh--HHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg--~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
..|+.|+. ..+||.| -++..|++.|.++|++|.|++..|+.
T Consensus 28 vPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 28 VPVVIVGN-----LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred CCEEEEec-----cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 44555655 2457666 47889999999999999999999876
No 218
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.61 E-value=68 Score=24.89 Aligned_cols=27 Identities=33% Similarity=0.206 Sum_probs=21.8
Q ss_pred cHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 102 GLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 102 Glg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
|.|..-.+++..|++.|.+|+++....
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 345566799999999999999998663
No 219
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=26.58 E-value=1.1e+02 Score=30.14 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.|-.=..|++.|.++||+|.++..+
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 555555567889999999999888743
No 220
>PRK06924 short chain dehydrogenase; Provisional
Probab=26.58 E-value=79 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=18.9
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+| ..+++.|+++|++|.++...
T Consensus 10 sggiG---~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 10 SQGLG---EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred CchHH---HHHHHHHHhcCCEEEEEeCC
Confidence 35555 46788999999999887643
No 221
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.55 E-value=1e+02 Score=29.17 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=25.7
Q ss_pred ceEEEEecccCCCCCCCc--HhHHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GG--lg~~v~~La~aL~~~GheV~Vi~ 125 (454)
|||+-|+.. + || -.+....|+.+|+++|.+|.+|=
T Consensus 1 m~iI~v~s~-----K-GGvGKTt~a~nla~~la~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGV-----K-GGVGKTTLTANLASALKLLGEPVLAID 37 (246)
T ss_pred CcEEEEEeC-----C-CCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 666655442 2 55 45678899999999999998884
No 222
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=26.52 E-value=49 Score=33.97 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.3
Q ss_pred hhhhHHHHHCCCeEEEEEec
Q 012874 108 GGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 108 ~~La~aL~~~GheV~Vi~p~ 127 (454)
..|+++|+++||+|+++++.
T Consensus 13 l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 13 LGVVEELVARGHRVTYATTE 32 (392)
T ss_pred HHHHHHHHhCCCeEEEEeCH
Confidence 57999999999999999975
No 223
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=26.24 E-value=6.1e+02 Score=26.53 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=29.1
Q ss_pred CceEEEEecccCCCCCCCcHhH--HHhhhhHHHHHC--CCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAAN--GHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~--~v~~La~aL~~~--GheV~Vi~p~ 127 (454)
.|||+|-+.+. =|+|- ....++++|++. |.+|.+|+-.
T Consensus 9 ~~Ri~~Yshd~------~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~ 50 (400)
T COG4671 9 RPRILFYSHDL------LGLGHLRRALRIAHALVEDYLGFDILIISGG 50 (400)
T ss_pred cceEEEEehhh------ccchHHHHHHHHHHHHhhcccCceEEEEeCC
Confidence 46999998863 44554 456789999998 9999999843
No 224
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.21 E-value=1e+02 Score=29.64 Aligned_cols=25 Identities=40% Similarity=0.702 Sum_probs=21.0
Q ss_pred CcHh--HHHhhhhHHHHHCCCeEEEEE
Q 012874 101 GGLG--DVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 101 GGlg--~~v~~La~aL~~~GheV~Vi~ 125 (454)
||.| +....|+.+|+++|++|.+|=
T Consensus 10 GGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6555 567899999999999999983
No 225
>PRK06703 flavodoxin; Provisional
Probab=26.02 E-value=1.2e+02 Score=26.75 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=29.6
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
|||+.+-. +.+|-...++..|+.+|.+.|++|.++-.
T Consensus 2 mkv~IiY~-----S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 2 AKILIAYA-----SMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 56666532 25799999999999999999999988754
No 226
>PRK06849 hypothetical protein; Provisional
Probab=25.98 E-value=93 Score=32.08 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
++|+||+++.. ......+++.|.+.||+|.++...
T Consensus 3 ~~~~VLI~G~~----------~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR----------APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC----------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899887543 224578999999999999999654
No 227
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=25.67 E-value=96 Score=31.28 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=25.0
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
..|||+.. ||.|-.=..|+++|.++|++|.++..
T Consensus 9 ~~~~vLVt----------G~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVT----------GATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred CCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36887765 45555556688889999999998764
No 228
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=25.53 E-value=96 Score=33.14 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=22.4
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
|||+.|+...+ |. +.-..|.+.||||.++.
T Consensus 1 mkiaiigqs~f------g~-----~vy~~lrk~gheiv~vf 30 (881)
T KOG2452|consen 1 MKIAVIGQSLF------GQ-----EVYCHLRKEGHEVVGVF 30 (881)
T ss_pred CeeEEechhhh------hH-----HHHHHHHhcCceEEEEE
Confidence 89999977532 23 44567999999999885
No 229
>PRK05993 short chain dehydrogenase; Provisional
Probab=25.46 E-value=92 Score=30.18 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=19.5
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+|. .+++.|+++|++|.++...
T Consensus 13 sggiG~---~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 13 SSGIGA---YCARALQSDGWRVFATCRK 37 (277)
T ss_pred CcHHHH---HHHHHHHHCCCEEEEEECC
Confidence 467775 5678899999999888754
No 230
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=25.31 E-value=56 Score=31.33 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.5
Q ss_pred cHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 102 Glg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|+|.+=..+++.|.++||+|.++-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 56777789999999999999999654
No 231
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=25.24 E-value=95 Score=31.26 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
++|+|+..+. +|++| ..|++.|.++||+|.++..
T Consensus 3 ~~k~ilItGa-------tG~IG---~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 3 QGKKVLVTGH-------TGFKG---SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CCCEEEEECC-------CChhH---HHHHHHHHHCCCEEEEEeC
Confidence 3567766532 35555 6688899999999988763
No 232
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=25.20 E-value=1e+02 Score=29.31 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=23.9
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+|+|++++. +|++|. .|++.|.++||+|.+++..
T Consensus 17 ~~~ilItGa-------sG~iG~---~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGA-------TGRTGK---RIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECC-------CcHHHH---HHHHHHHhCCCEEEEEecC
Confidence 577877643 355654 5667788899999887643
No 233
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=25.19 E-value=1.3e+02 Score=31.16 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=24.3
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.|+|+.+ ||.|..=..++++|.++||+|.++...
T Consensus 60 ~~kVLVt----------GatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 60 DVTVLVV----------GATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 5787765 444444456777888999999998754
No 234
>PRK04148 hypothetical protein; Provisional
Probab=24.84 E-value=1e+02 Score=27.28 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=22.1
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
++||+-|+..+ | ..++..|++.||+|+.+=
T Consensus 17 ~~kileIG~Gf------G------~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 17 NKKIVELGIGF------Y------FKVAKKLKESGFDVIVID 46 (134)
T ss_pred CCEEEEEEecC------C------HHHHHHHHHCCCEEEEEE
Confidence 57888886532 1 256778889999999883
No 235
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=24.73 E-value=1.2e+02 Score=31.40 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=28.3
Q ss_pred CCceEEEEecccCCCCCCCcHh--HHHhhhhHHHHHCCCeEEEEE
Q 012874 83 VGLNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg--~~v~~La~aL~~~GheV~Vi~ 125 (454)
.+|+|+.|+.. -||.| +....||.+|+++|++|.+|=
T Consensus 102 ~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID 140 (387)
T TIGR03453 102 EHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAID 140 (387)
T ss_pred CCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 46788877663 36655 556889999999999998884
No 236
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=24.69 E-value=1e+02 Score=29.27 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=20.8
Q ss_pred CcHhH--HHhhhhHHHHHCCCeEEEEE
Q 012874 101 GGLGD--VLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 101 GGlg~--~v~~La~aL~~~GheV~Vi~ 125 (454)
||.|. ....|+.+|+++|.+|.++=
T Consensus 11 GGvGKTt~a~~lA~~la~~g~~vlliD 37 (261)
T TIGR01968 11 GGVGKTTTTANLGTALARLGKKVVLID 37 (261)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEEEEE
Confidence 65554 78999999999999998883
No 237
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.52 E-value=1.7e+02 Score=29.19 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCCCCCcEEE-EEcC-CccccC--HHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874 387 KEALQAEVGLPVDRNIPVIG-FIGR-LEEQKG--SDILAAAIPHFIKENVQIIVLVSITIR 443 (454)
Q Consensus 387 k~~lr~~~Gl~~~~~~~lIl-fvGR-L~~qKG--~d~LieA~~~l~~~~v~lvIvG~G~~~ 443 (454)
++.+..+++++. +.++|+ ..|- ..+.|. .+.+.+.+..+.+.+.++|++|..+++
T Consensus 161 ~~~~~~~~~~~~--~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~ 219 (334)
T TIGR02195 161 QAAALAKFGLDT--ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDH 219 (334)
T ss_pred HHHHHHHcCCCC--CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhH
Confidence 344556667653 345544 4443 445665 557777777776667899999986554
No 238
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=24.47 E-value=3.5e+02 Score=25.19 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=23.9
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCC--eEEEEEecC
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPRY 128 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~Gh--eV~Vi~p~y 128 (454)
|||+++.+ |-|.....+..++.+.++ +|.++.+..
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECC
Confidence 67888753 456667788888888766 666655553
No 239
>PLN02240 UDP-glucose 4-epimerase
Probab=24.35 E-value=1e+02 Score=30.83 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEE
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~ 125 (454)
++++|++.+. +|++| ..|++.|.++||+|.++.
T Consensus 4 ~~~~vlItGa-------tG~iG---~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGG-------AGYIG---SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEe
Confidence 3466665422 35555 457788999999998886
No 240
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.90 E-value=99 Score=29.90 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=18.9
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+|. .+++.|+++|++|.++...
T Consensus 13 sggiG~---~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 13 SSGFGR---ALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CChHHH---HHHHHHHhCcCEEEEEeCC
Confidence 466665 5677889999999988754
No 241
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.67 E-value=1.1e+02 Score=28.23 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=22.6
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.++|++++. +||+| ..|++.|.++||+|.+++.+
T Consensus 6 ~~~vlItGa-------sg~iG---~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTGA-------ARGLG---RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCEEEEeCC-------CchHH---HHHHHHHHHCCCeEEEEeCC
Confidence 346665532 35555 46778899999999776644
No 242
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.65 E-value=1.4e+02 Score=29.46 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=25.0
Q ss_pred ccCCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 80 ~~~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.++++++|+..+. +||+|. .+++.|+++|++|.++..+
T Consensus 36 ~~~~~k~vlItGa-------sggIG~---~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 36 VDLTGKRILLTGA-------SSGIGE---AAAEQFARRGATVVAVARR 73 (293)
T ss_pred cCCCCCEEEEeCC-------CcHHHH---HHHHHHHHCCCEEEEEECC
Confidence 3344555554432 466665 5677789999999888754
No 243
>PRK11914 diacylglycerol kinase; Reviewed
Probab=23.65 E-value=1.8e+02 Score=28.86 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=32.4
Q ss_pred cCCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 81 ~~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
+++.||+++|. .|.+..|.......++.+.|.+.|+++.++...+
T Consensus 5 ~~~~~~~~iI~---NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 5 RHEIGKVTVLT---NPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred cCCCceEEEEE---CCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 34568888884 4643334455677788899999999999887655
No 244
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.62 E-value=1.2e+02 Score=28.13 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=22.6
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.++|++.+. +||+| ..+++.|.++|++|.++...
T Consensus 5 ~~~ilItGa-------sg~iG---~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 5 GKTALVTGA-------SRGIG---RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 356665432 35555 46778888999998777644
No 245
>PRK05568 flavodoxin; Provisional
Probab=23.54 E-value=1.4e+02 Score=25.71 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCCcHhHHHhhhhHHHHHCCCeEEEEEe
Q 012874 99 KTGGLGDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 99 ~~GGlg~~v~~La~aL~~~GheV~Vi~p 126 (454)
.+|-...++..+++++.+.|++|.++-.
T Consensus 11 ~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 11 GTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred CCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4799999999999999999999988843
No 246
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=23.53 E-value=1.4e+02 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.5
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|+|+.|+.. +..|-.+.+..|++.|.++|++|-++=+.
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 778777652 35788999999999999999999999653
No 247
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.25 E-value=95 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=19.1
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+| ..+++.|.++|++|.++...
T Consensus 10 s~giG---~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 10 TSDIA---RACARRYAAAGARLYLAARD 34 (243)
T ss_pred CcHHH---HHHHHHHHhcCCEEEEEeCC
Confidence 35555 67888999999999888654
No 248
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.15 E-value=1.1e+02 Score=29.34 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.4
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+| ..+++.|+++|++|.++...
T Consensus 13 sg~iG---~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 13 SSGIG---RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 46666 56788899999999888754
No 249
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.12 E-value=1.1e+03 Score=26.42 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=32.5
Q ss_pred HHHHHHhCCCCCCCCcEEEEE--cCCcc-ccCHHHHHHHHh--hcccCCcEEEEEe
Q 012874 388 EALQAEVGLPVDRNIPVIGFI--GRLEE-QKGSDILAAAIP--HFIKENVQIIVLV 438 (454)
Q Consensus 388 ~~lr~~~Gl~~~~~~~lIlfv--GRL~~-qKG~d~LieA~~--~l~~~~v~lvIvG 438 (454)
++.++++|++. +.++|+.. +|-.| +.-...+++|+. .+. ++.++++.-
T Consensus 401 ~~~r~~lgl~~--~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~ 453 (608)
T PRK01021 401 LSWKEQLHLPS--DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSS 453 (608)
T ss_pred HHHHHHcCCCC--CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEec
Confidence 34577889864 55665443 56655 777899999997 553 468887753
No 250
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.07 E-value=3.7e+02 Score=23.47 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=12.1
Q ss_pred hccCCeEEEcCCCcCC
Q 012874 345 IRKTGIKGIVNGMDVQ 360 (454)
Q Consensus 345 l~~~~i~vIpNGiD~~ 360 (454)
++...+.||.+|+|.+
T Consensus 26 l~~~GfeVi~lg~~~s 41 (132)
T TIGR00640 26 YADLGFDVDVGPLFQT 41 (132)
T ss_pred HHhCCcEEEECCCCCC
Confidence 3446789999998854
No 251
>PRK06953 short chain dehydrogenase; Provisional
Probab=22.94 E-value=89 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=18.9
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.+-.-..+++.|.++|++|.++...
T Consensus 8 G~sg~iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 8 GASRGIGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred cCCCchhHHHHHHHHhCCCEEEEEECC
Confidence 444444456788888999998887644
No 252
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=22.93 E-value=1.7e+02 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=28.2
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCC-CeEEEEEe
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAP 126 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~G-heV~Vi~p 126 (454)
||+.++.++ +||. ---......++.++.+.| ++|.++.-
T Consensus 1 m~~~Ivvt~-ppYg--~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 1 MKYTIVVTG-PPYG--TESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred CeEEEEEec-CCCc--cHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 788888775 6642 134566789999999997 57777753
No 253
>PRK04155 chaperone protein HchA; Provisional
Probab=22.76 E-value=1.7e+02 Score=29.28 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=28.5
Q ss_pred CceEEEEecccCCCC-CCCc---HhHHHhhh---hHHHHHCCCeEEEEEecC
Q 012874 84 GLNILFVGTEVAPWS-KTGG---LGDVLGGL---PPALAANGHRVMTIAPRY 128 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~-~~GG---lg~~v~~L---a~aL~~~GheV~Vi~p~y 128 (454)
++|||+|.++..-+. ..|- .|....++ -..|.+.|++|++++|..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 469999988764322 1222 23333333 345778899999999864
No 254
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.71 E-value=1.4e+02 Score=29.71 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=22.9
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEecCC
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~y~ 129 (454)
++|+|. ++++.|+++|++|.+++.+-+
T Consensus 15 SsGIG~---~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 15 SSGIGA---ELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CchHHH---HHHHHHHHCCCEEEEEeCcHH
Confidence 588884 789999999999999997744
No 255
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=22.62 E-value=2.3e+02 Score=26.72 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=23.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCC--CeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~G--heV~Vi~p~ 127 (454)
|||+++++ |-|..+..|..++.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEec
Confidence 78998854 33666778888888765 667665544
No 256
>PRK06101 short chain dehydrogenase; Provisional
Probab=22.60 E-value=1e+02 Score=29.01 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=19.1
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+| ..+++.|+++|++|.++...
T Consensus 10 s~giG---~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 10 TSGIG---KQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CcHHH---HHHHHHHHhCCCEEEEEECC
Confidence 46666 56788899999999887643
No 257
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=22.58 E-value=99 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=19.5
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.|-.=..|++.|.++|++|.++...
T Consensus 7 G~~G~iG~~l~~~L~~~g~~V~~~~r~ 33 (328)
T TIGR03466 7 GATGFVGSAVVRLLLEQGEEVRVLVRP 33 (328)
T ss_pred CCccchhHHHHHHHHHCCCEEEEEEec
Confidence 444444455788899999999998754
No 258
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=22.34 E-value=90 Score=30.99 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.4
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||++++.|..-+ ....+.+++.++||+|.++-+.
T Consensus 1 m~~~i~~~~~s~~--------s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLY--------SCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcch--------hHHHHHHHHHHcCCeEEEEehH
Confidence 8899998774322 2358899999999999999866
No 259
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.21 E-value=97 Score=31.08 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=25.1
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||.||+ +|.+=..++..|.+.||+|+|.-..
T Consensus 1 ~kIafIG-----------LG~MG~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIG-----------LGIMGSPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEc-----------CchhhHHHHHHHHHCCCEEEEEeCC
Confidence 5777773 5555578899999999999999654
No 260
>PRK06182 short chain dehydrogenase; Validated
Probab=21.97 E-value=1.5e+02 Score=28.53 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=19.4
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+|.. +++.|.++|++|.++...
T Consensus 12 sggiG~~---la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 12 SSGIGKA---TARRLAAQGYTVYGAARR 36 (273)
T ss_pred CChHHHH---HHHHHHHCCCEEEEEeCC
Confidence 4677754 778899999999888754
No 261
>PRK08177 short chain dehydrogenase; Provisional
Probab=21.93 E-value=1.1e+02 Score=28.50 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=19.2
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+|. .+++.|+++|++|.++...
T Consensus 10 sg~iG~---~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 10 SRGLGL---GLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CchHHH---HHHHHHHhCCCEEEEEeCC
Confidence 466665 4688899999999888754
No 262
>PRK07577 short chain dehydrogenase; Provisional
Probab=21.79 E-value=1.3e+02 Score=27.81 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=18.9
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+||+|. .+++.|+++|++|.++...
T Consensus 12 s~~iG~---~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 12 TKGIGL---ALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CCcHHH---HHHHHHHHCCCEEEEEeCC
Confidence 355555 5678899999999888754
No 263
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=21.59 E-value=2.3e+02 Score=23.10 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=27.6
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCC---CeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG---HRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~G---heV~Vi~p~ 127 (454)
|+|+++.+. .|+ ..........++......| ++|.|+.-.
T Consensus 1 k~v~~i~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 688888774 342 1223677788888899999 999998744
No 264
>PRK08267 short chain dehydrogenase; Provisional
Probab=21.51 E-value=1.1e+02 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=19.2
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.+-.=..+++.|+++|++|.++...
T Consensus 8 Gasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 8 GAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 333334456788899999999988754
No 265
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.50 E-value=2.3e+02 Score=26.56 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=31.9
Q ss_pred cEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCC-ccchHHHHHhhh
Q 012874 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSIT-IRNYSTLYTFIM 453 (454)
Q Consensus 403 ~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~-~~~~~~l~~~~~ 453 (454)
-+|+|+|-..+. ....+.+++.++.++++++-++|=|. ......|..|++
T Consensus 109 rivi~v~S~~~~-d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~ 159 (187)
T cd01452 109 RIVAFVGSPIEE-DEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFID 159 (187)
T ss_pred eEEEEEecCCcC-CHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHH
Confidence 467888887432 12235677777777788888877664 345566666654
No 266
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=21.48 E-value=1.5e+02 Score=29.42 Aligned_cols=35 Identities=37% Similarity=0.514 Sum_probs=23.5
Q ss_pred eEEEEecccCCCCCCCcH--hHHHhhhhHHHHHCCCeEEEEEe
Q 012874 86 NILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAP 126 (454)
Q Consensus 86 kIl~vs~e~~P~~~~GGl--g~~v~~La~aL~~~GheV~Vi~p 126 (454)
+|..|+++ | ||. .++..+|+-+|+++|++|-++=-
T Consensus 1 HiIvV~sg-----K-GGvGKSTva~~lA~aLa~~G~kVg~lD~ 37 (261)
T PF09140_consen 1 HIIVVGSG-----K-GGVGKSTVAVNLAVALARMGKKVGLLDL 37 (261)
T ss_dssp EEEEEE-S-----S-TTTTHHHHHHHHHHHHHCTT--EEEEE-
T ss_pred CEEEEecC-----C-CCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 35556665 3 555 56778999999999999999953
No 267
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=21.39 E-value=1.3e+02 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=27.4
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
+.|||+.. ||.|-.=..|.+.|.++|++|..+...
T Consensus 14 ~~~~vlVt----------GatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 14 APKRWLIT----------GVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred cCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45776654 777777788999999999999888643
No 268
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.32 E-value=1.1e+02 Score=30.64 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=24.9
Q ss_pred CceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 84 ~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
.|||++++. |.+| ..++..|++.||+|+++.++
T Consensus 4 ~m~I~iIG~--------G~mG---~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGA--------GAWG---TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECc--------CHHH---HHHHHHHHHCCCeEEEEeCC
Confidence 589988843 4444 45677888999999999864
No 269
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=21.28 E-value=3.7e+02 Score=27.17 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=45.9
Q ss_pred HHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHH
Q 012874 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (454)
Q Consensus 312 ~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr 391 (454)
......|.+++.|+...+.+.+ .++... . .++..|. |..|..+ ......++.++
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~--~f~~~~------~--~i~~~G~------PR~D~l~----------~~~~~~~~~i~ 183 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKK--AFGYPE------D--KILVTGY------PRNDYLF----------NKSKENRNRIK 183 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHH--HTT--G------G--GEEES--------GGGHHHH----------HSTT-HHHHHH
T ss_pred hhccCCcEEEECCHHHHHHHHH--HhccCc------c--eEEEeCC------CeEhHHh----------ccCHHHHHHHH
Confidence 3456789999999987776663 455322 2 3444553 2222211 11222256788
Q ss_pred HHhCCCCCCCCcEEEEEcCCccccCH------H--HHHHHHhhcccCCcEEEEEec
Q 012874 392 AEVGLPVDRNIPVIGFIGRLEEQKGS------D--ILAAAIPHFIKENVQIIVLVS 439 (454)
Q Consensus 392 ~~~Gl~~~~~~~lIlfvGRL~~qKG~------d--~LieA~~~l~~~~v~lvIvG~ 439 (454)
+.+|++. +..+|+|+=.+...... . .-.+.+..+.+.++.|++-..
T Consensus 184 ~~~~~~~--~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~H 237 (369)
T PF04464_consen 184 KKLGIDK--DKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPH 237 (369)
T ss_dssp HHTT--S--S-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--S
T ss_pred HHhccCC--CCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeC
Confidence 8888875 56799999655442222 1 122333333445777776543
No 270
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=21.13 E-value=1.8e+02 Score=28.16 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEE
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi 124 (454)
++.|++.|++-- ..-|-.+....|+.+|++.|.+|.+|
T Consensus 101 ~~~~vi~vts~~----~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 101 EGRKALAVVSAK----SGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred CCCeEEEEECCC----CCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 346777776531 24567888999999999999999988
No 271
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=21.07 E-value=1e+02 Score=28.89 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.7
Q ss_pred CCcHhHHHh--hhhHHHHHCCCeEEEEEec
Q 012874 100 TGGLGDVLG--GLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 100 ~GGlg~~v~--~La~aL~~~GheV~Vi~p~ 127 (454)
+|+.+.+-. .+.+.|.+.|++|+++..+
T Consensus 8 TGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 8 TGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred ecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 577777766 8999999999999999755
No 272
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=20.91 E-value=1.3e+02 Score=28.37 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=23.1
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|+|+.++. +||+|.. +++.|.++|++|.++...
T Consensus 1 ~~vlItGa-------sg~iG~~---la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTGA-------TAGFGEC---ITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CEEEEECC-------CchHHHH---HHHHHHHCCCEEEEEECC
Confidence 56655533 4666654 678899999999887643
No 273
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=20.63 E-value=1.4e+02 Score=29.61 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=24.7
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHC---CCeEEEEEecCCc
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN---GHRVMTIAPRYDQ 130 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~---GheV~Vi~p~y~~ 130 (454)
||||+....-. ..-|+. .|.++|.+. |++|+|++|...+
T Consensus 1 M~ILlTNDDGI---~a~Gl~----aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGI---NAPGLE----VLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCC---CCHhHH----HHHHHHHHhccCCCeEEEEeCCCCC
Confidence 78888776532 123443 445555553 4799999998655
No 274
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.62 E-value=1.2e+02 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=19.9
Q ss_pred CcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 101 GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
||.+-+-..|++.|.++|++|.+++..
T Consensus 8 Ga~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 8 GAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444444467889999999998888754
No 275
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.47 E-value=6.8e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.2
Q ss_pred HHHHHHhhhCCceeccCHHHHHHHHcCCCCCccchhhhccCCeEEEcC
Q 012874 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355 (454)
Q Consensus 308 ~~~k~~i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpN 355 (454)
.+.+..+..-|.|.+.|+..++.+.+ .|.. ++++.+.-|
T Consensus 141 ~~~r~~l~~f~~i~aqs~~da~r~~~---lG~~------~~~v~v~Gn 179 (186)
T PF04413_consen 141 FLFRPLLSRFDRILAQSEADAERFRK---LGAP------PERVHVTGN 179 (186)
T ss_dssp HHHHHHGGG-SEEEESSHHHHHHHHT---TT-S--------SEEE---
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH---cCCC------cceEEEeCc
Confidence 35667788899999999999999984 5542 356776655
No 276
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=20.41 E-value=1.4e+02 Score=29.77 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=23.8
Q ss_pred ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEec
Q 012874 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (454)
Q Consensus 85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~ 127 (454)
|||.+|+ +|.+=..|+..|.+.||+|.++-+.
T Consensus 1 M~Ig~IG-----------lG~mG~~la~~L~~~g~~V~~~dr~ 32 (298)
T TIGR00872 1 MQLGLIG-----------LGRMGANIVRRLAKRGHDCVGYDHD 32 (298)
T ss_pred CEEEEEc-----------chHHHHHHHHHHHHCCCEEEEEECC
Confidence 6777773 4555567899999999999886543
No 277
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=20.26 E-value=1.4e+02 Score=31.47 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCcHhHHHhhhhHHHHHCCCeEEEEEecCCc
Q 012874 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (454)
Q Consensus 100 ~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~ 130 (454)
..|-=..+..++..|+++||.|+++.+....
T Consensus 15 ~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~ 45 (496)
T KOG1192|consen 15 GQSHLNPMLQLAKRLAERGHNVTVVTPSFNA 45 (496)
T ss_pred cccHHHHHHHHHHHHHHcCCceEEEEeechh
Confidence 4677788899999999999999999987543
No 278
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.13 E-value=89 Score=29.43 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=27.1
Q ss_pred CCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecC
Q 012874 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (454)
Q Consensus 83 ~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y 128 (454)
++.+|+.| || |.+....++.|.+.|++|+|+.|..
T Consensus 9 ~~k~vLVI----------Gg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIV----------GG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEE----------CC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34577776 33 6666788899999999999999865
Done!