BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012875
         (454 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6LE09|LIPA_PARD8 Lipoyl synthase OS=Parabacteroides distasonis (strain ATCC 8503 /
           DSM 20701 / NCTC 11152) GN=lipA PE=3 SV=1
          Length = 281

 Score = 32.3 bits (72), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 39/160 (24%)

Query: 32  KFCASLNPKPLTTSPKSLSSNGTSLR------HVTRTLSNDDEPPAAGSPMVSSASAVAS 85
           +FC +L  KPL   PK  ++   S+R       V  ++  DD P    S  V++      
Sbjct: 68  RFCNTLTGKPLPLDPKEPANVAESIRLMNLKHAVITSVDRDDLPDLGASHWVNT------ 121

Query: 86  AIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD--PDAV------ 137
                       ++TI+    +  + +  PDFQ     +L L  ++VD  P+ +      
Sbjct: 122 ------------IRTIKEVNPQTTVEVLIPDFQ----GRLDLVDQVVDAAPEIISHNMET 165

Query: 138 ---LSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVG 174
              +S  VR A  Y +    LRR+     V  T I+V +G
Sbjct: 166 VRRISPQVRSAAKYDVSLSVLRRIAERGVVAKTGIMVGLG 205


>sp|Q5FS85|KGUA_GLUOX Guanylate kinase OS=Gluconobacter oxydans (strain 621H) GN=gmk PE=3
           SV=1
          Length = 208

 Score = 32.0 bits (71), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 341 EISYDIVEDIMVQGDRL-RGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRS 399
           +  +D+V DI  QG RL R  L +   ++F+   ++    EE  +++N  A  HPE I  
Sbjct: 96  DAGHDMVFDIDWQGHRLLRAALPDDVVSLFVLPPSL----EELERRLNKRASDHPEEIAR 151

Query: 400 QLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRKTVQCF 454
           ++       +  ++  ++     LDT        +    LA  +Q  +   V  F
Sbjct: 152 RMKAALDEISHWSEFDHTIINSDLDTAISQARSVLTAARLATRRQRNLLDMVASF 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,618,640
Number of Sequences: 539616
Number of extensions: 6052190
Number of successful extensions: 19528
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 19524
Number of HSP's gapped (non-prelim): 23
length of query: 454
length of database: 191,569,459
effective HSP length: 121
effective length of query: 333
effective length of database: 126,275,923
effective search space: 42049882359
effective search space used: 42049882359
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)