Query 012875
Match_columns 454
No_of_seqs 102 out of 107
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00512 HisKA: His Kinase A ( 99.0 1.3E-09 2.8E-14 83.3 6.7 64 308-371 2-66 (68)
2 PRK10490 sensor protein KdpD; 98.7 6.1E-07 1.3E-11 100.3 17.0 132 197-373 592-730 (895)
3 COG3852 NtrB Signal transducti 98.6 1.4E-07 2.9E-12 96.0 8.1 58 309-367 133-190 (363)
4 smart00388 HisKA His Kinase A 98.6 2.3E-07 5E-12 66.7 6.6 62 309-371 3-64 (66)
5 PRK13837 two-component VirA-li 98.5 1.7E-06 3.7E-11 94.9 15.0 65 309-373 451-515 (828)
6 cd00082 HisKA Histidine Kinase 98.5 6.4E-07 1.4E-11 63.5 7.3 61 308-368 4-64 (65)
7 PRK10364 sensor protein ZraS; 98.4 4.4E-06 9.5E-11 84.2 12.4 67 309-375 238-304 (457)
8 PRK09303 adaptive-response sen 98.3 2.2E-06 4.8E-11 85.6 9.8 82 294-375 137-224 (380)
9 TIGR02916 PEP_his_kin putative 98.3 1.4E-05 3E-10 85.9 15.0 122 202-368 412-535 (679)
10 COG2205 KdpD Osmosensitive K+ 98.2 2.3E-05 4.9E-10 87.7 14.9 134 196-375 588-729 (890)
11 PRK11006 phoR phosphate regulo 98.2 5.3E-06 1.1E-10 83.1 8.2 65 308-372 204-268 (430)
12 PRK10618 phosphotransfer inter 98.0 2.9E-05 6.3E-10 87.6 11.0 78 294-372 436-513 (894)
13 PRK09959 hybrid sensory histid 98.0 2.2E-05 4.8E-10 88.4 9.3 81 293-373 697-777 (1197)
14 PRK11073 glnL nitrogen regulat 97.9 3E-05 6.4E-10 74.4 8.1 63 309-372 131-193 (348)
15 PRK10841 hybrid sensory kinase 97.9 7.4E-05 1.6E-09 84.1 11.1 79 293-372 432-510 (924)
16 PRK11107 hybrid sensory histid 97.9 4.4E-05 9.6E-10 82.7 8.8 67 306-373 291-357 (919)
17 TIGR02956 TMAO_torS TMAO reduc 97.8 0.00016 3.4E-09 79.2 12.0 73 300-373 456-528 (968)
18 PRK15347 two component system 97.8 0.00015 3.2E-09 78.8 11.7 74 299-373 389-462 (921)
19 PRK10815 sensor protein PhoQ; 97.8 0.00016 3.4E-09 75.4 11.0 71 300-372 258-328 (485)
20 PRK11466 hybrid sensory histid 97.8 0.00018 3.9E-09 78.6 12.0 72 299-371 435-506 (914)
21 PRK10755 sensor protein BasS/P 97.8 0.00014 3.1E-09 70.5 9.9 72 295-372 124-195 (356)
22 PRK10337 sensor protein QseC; 97.7 0.00018 3.9E-09 71.6 10.1 74 299-372 228-301 (449)
23 PRK10604 sensor protein RstB; 97.7 0.00015 3.2E-09 73.5 8.4 74 294-373 198-271 (433)
24 TIGR01386 cztS_silS_copS heavy 97.7 0.00021 4.6E-09 70.2 9.2 75 299-373 232-306 (457)
25 PRK11360 sensory histidine kin 97.6 0.00031 6.7E-09 70.4 10.3 70 307-377 389-458 (607)
26 PRK11091 aerobic respiration c 97.6 0.00015 3.2E-09 78.4 8.6 67 305-372 280-346 (779)
27 PRK09467 envZ osmolarity senso 97.6 0.00028 6.1E-09 69.8 9.8 66 300-371 221-286 (435)
28 PRK09835 sensor kinase CusS; P 97.6 0.0003 6.5E-09 70.2 9.8 82 292-373 246-327 (482)
29 PRK09470 cpxA two-component se 97.5 0.00087 1.9E-08 66.4 10.5 78 290-371 225-302 (461)
30 TIGR02966 phoR_proteo phosphat 97.4 0.00044 9.5E-09 64.2 7.5 64 309-372 115-179 (333)
31 COG5002 VicK Signal transducti 97.4 0.00042 9E-09 72.3 7.0 67 308-374 225-292 (459)
32 PRK13560 hypothetical protein; 97.3 0.00069 1.5E-08 71.5 8.6 42 299-340 596-637 (807)
33 COG5000 NtrY Signal transducti 97.3 0.00062 1.4E-08 74.7 8.2 70 309-378 487-561 (712)
34 PRK10549 signal transduction h 97.2 0.0023 5E-08 63.8 10.7 71 299-371 231-301 (466)
35 PRK11644 sensory histidine kin 97.2 0.0034 7.4E-08 66.0 11.9 64 309-372 303-366 (495)
36 COG4251 Bacteriophytochrome (l 97.0 0.0041 8.9E-08 68.8 10.6 95 277-373 495-591 (750)
37 PRK11100 sensory histidine kin 97.0 0.0033 7.1E-08 62.1 8.7 63 309-372 257-319 (475)
38 PRK13559 hypothetical protein; 96.9 0.0034 7.5E-08 60.9 7.8 75 306-384 168-242 (361)
39 TIGR03785 marine_sort_HK prote 96.8 0.0069 1.5E-07 66.6 10.3 77 294-371 471-547 (703)
40 PRK13557 histidine kinase; Pro 96.7 0.0069 1.5E-07 60.9 8.9 66 307-372 162-231 (540)
41 TIGR02938 nifL_nitrog nitrogen 96.1 0.037 8.1E-07 54.5 9.9 60 308-368 276-335 (494)
42 COG0642 BaeS Signal transducti 95.7 0.071 1.5E-06 48.3 9.0 65 307-373 114-178 (336)
43 COG4191 Signal transduction hi 94.9 0.24 5.2E-06 54.7 11.3 66 309-375 385-453 (603)
44 PF13492 GAF_3: GAF domain; PD 94.3 1.4 3.1E-05 35.6 12.1 91 117-220 2-101 (129)
45 PRK11086 sensory histidine kin 94.1 0.2 4.3E-06 51.0 8.1 25 309-333 340-364 (542)
46 PRK10600 nitrate/nitrite senso 93.5 2.4 5.3E-05 44.9 15.2 125 200-370 298-425 (569)
47 TIGR01817 nifA Nif-specific re 91.0 11 0.00025 40.3 16.6 32 112-144 15-46 (534)
48 PRK15053 dpiB sensor histidine 90.3 1.3 2.7E-05 46.0 8.5 52 310-369 340-391 (545)
49 smart00065 GAF Domain present 87.6 11 0.00025 29.1 13.3 27 117-144 2-28 (149)
50 PRK10935 nitrate/nitrite senso 80.6 40 0.00087 35.1 13.7 83 281-365 335-422 (565)
51 PF01590 GAF: GAF domain; Int 80.3 5.2 0.00011 33.3 5.9 42 117-164 2-43 (154)
52 COG4192 Signal transduction hi 79.4 22 0.00049 39.5 11.6 64 309-374 452-519 (673)
53 PRK05022 anaerobic nitric oxid 78.0 15 0.00032 39.4 9.8 98 202-370 112-209 (509)
54 PF13185 GAF_2: GAF domain; PD 70.8 13 0.00028 30.7 5.8 20 201-220 102-121 (148)
55 COG2203 FhlA FOG: GAF domain [ 67.5 34 0.00074 27.6 7.5 20 201-220 116-135 (175)
56 COG3851 UhpB Signal transducti 63.8 1.4E+02 0.0031 32.6 12.9 102 273-375 247-369 (497)
57 COG1956 GAF domain-containing 58.8 1.5E+02 0.0033 28.5 11.0 101 109-220 25-134 (163)
58 KOG3091 Nuclear pore complex, 56.9 35 0.00076 37.7 7.3 57 309-366 417-487 (508)
59 PRK11061 fused phosphoenolpyru 54.6 1.8E+02 0.0039 33.4 12.7 33 111-144 12-44 (748)
60 PF04136 Sec34: Sec34-like fam 44.9 1.2E+02 0.0027 28.1 8.0 69 300-368 4-72 (157)
61 PRK15429 formate hydrogenlyase 41.9 1.6E+02 0.0035 32.9 9.7 20 201-220 296-315 (686)
62 PF05651 Diacid_rec: Putative 39.7 1.7E+02 0.0038 26.6 8.0 20 201-220 71-90 (135)
63 PRK13558 bacterio-opsin activa 38.9 99 0.0021 33.5 7.4 20 201-220 390-409 (665)
64 PF11155 DUF2935: Domain of un 35.2 3.1E+02 0.0066 24.0 8.9 41 286-326 19-59 (124)
65 PRK15429 formate hydrogenlyase 33.0 2.3E+02 0.005 31.7 9.2 18 203-220 118-135 (686)
66 PF13943 WPP: WPP domain 30.2 2.3E+02 0.0049 25.3 6.9 62 276-337 10-83 (99)
67 PRK10935 nitrate/nitrite senso 26.4 6.8E+02 0.015 26.2 10.8 17 204-220 308-324 (565)
68 PF06461 DUF1086: Domain of Un 24.7 58 0.0013 30.7 2.4 79 269-364 37-118 (145)
69 PF15219 TEX12: Testis-express 23.4 1.7E+02 0.0037 26.1 4.8 44 326-369 45-88 (100)
70 PRK11477 carbohydrate diacid t 23.4 3.3E+02 0.0071 27.9 7.8 20 201-220 76-95 (385)
71 PF12282 H_kinase_N: Signal tr 21.8 6.2E+02 0.013 23.1 8.4 20 201-220 105-124 (145)
72 PF05384 DegS: Sensor protein 21.2 1.8E+02 0.0038 27.7 4.9 45 347-391 43-87 (159)
No 1
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=98.98 E-value=1.3e-09 Score=83.29 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=55.6
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHhh-hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 308 NNARMSNLVEQIRGPLSSIQTLSKMLSL-HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 308 q~~~la~L~HQiRNPLTAIRTfAkLLlk-RL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
+++++++++|||||||++|+++.++|.. .-.+++.-+++++.|..+.+|+.+++.++.++.+..
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~ 66 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIE 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999 333334458999999999999999999999997754
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=98.66 E-value=6.1e-07 Score=100.31 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=90.0
Q ss_pred cCCCCcEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcccccccccchhhhhhhhcccHH
Q 012875 197 VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSAD 276 (454)
Q Consensus 197 lps~~a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~e~~qIQ~~~~e~~~~~~f~~d 276 (454)
+|.....++||..++-++|+|+.+ .... +.+ |+.+
T Consensus 592 l~~~~~~~lPl~~~~~~~Gvl~l~-----------~~~~-----------~~~-----------------------~~~~ 626 (895)
T PRK10490 592 LPGVPYQILPLKSAQKTYGLLAVE-----------PGNL-----------RQL-----------------------MIPE 626 (895)
T ss_pred CCCCceEEEEEEECCEEEEEEEEe-----------cCcc-----------ccc-----------------------CCHH
Confidence 455567799999999999999998 2100 111 2234
Q ss_pred HhhHHHHHHHHHHHHHHH----H-HHHHHHHHHHHH-HhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCc-ccHHHHHH
Q 012875 277 QRLNAINICRSLAMAYVM----D-QKSMLLQQSSWQ-NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE-ISYDIVED 349 (454)
Q Consensus 277 qRl~a~~IA~tLAmA~vL----D-qr~~~Lqqql~q-q~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde-~~rdlae~ 349 (454)
++..+..++..++.|.-. + +++..++++.++ ++++++.++|||||||++|+|++++|...+..+. ...+.++.
T Consensus 627 ~~~ll~~la~~~a~aler~~l~~~~~~~~l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~ 706 (895)
T PRK10490 627 QQRLLETFTLLIANALERLTLTASEEQARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASE 706 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHH
Confidence 444444555444433321 1 122333333333 3778999999999999999999999987776554 44478899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 012875 350 IMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 350 Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
|..+.+|+.+++..|.+..++...
T Consensus 707 i~~~~~~l~~li~~LL~~srl~~~ 730 (895)
T PRK10490 707 IRQQVLNTTRLVNNLLDMARIQSG 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999988776543
No 3
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=98.58 E-value=1.4e-07 Score=95.98 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDA 367 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~ 367 (454)
..++.+|+|||||||+-|||-||||.+.+..++ .+++++.|+.|.|||+.|++-++-+
T Consensus 133 ~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~-~~~lt~lIieE~DRl~~LVDRme~~ 190 (363)
T COG3852 133 KGLVRGLAHEIKNPLGGIRGAAQLLERALPDEA-LRELTQLIIEEADRLRNLVDRLEVL 190 (363)
T ss_pred HHHHHHHHHHhcCcccchhhHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999998886544 9999999999999999999998544
No 4
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.55 E-value=2.3e-07 Score=66.67 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
++++..++||+||||++|+++.++|.+. ..++...++.+.|..+++++..++.++.++.+..
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDT-ELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999998772 2333337889999999999999999999886543
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.51 E-value=1.7e-06 Score=94.90 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
++++++++|||||||++|.+|++++......++..++..+.|..+++|+.+++.+|.++.+....
T Consensus 451 ~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~ 515 (828)
T PRK13837 451 GTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER 515 (828)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67899999999999999999999999998888888899999999999999999999998875544
No 6
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.48 E-value=6.4e-07 Score=63.54 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=54.8
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012875 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 308 q~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v 368 (454)
.++.+..++||+||||++|.+++++|.++....+...+..+.|..+++++..+++++.++.
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 64 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLS 64 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999887777778888999999999999999998764
No 7
>PRK10364 sensor protein ZraS; Provisional
Probab=98.36 E-value=4.4e-06 Score=84.16 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~i 375 (454)
+++.++++||+||||++|+++.+++..+...++..+++++.|..+.+|+++++..+.++.+.....+
T Consensus 238 ~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~~~~~ 304 (457)
T PRK10364 238 GHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLAL 304 (457)
T ss_pred HHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcc
Confidence 5678899999999999999999999999988888999999999999999999999999887654443
No 8
>PRK09303 adaptive-response sensory kinase; Validated
Probab=98.34 E-value=2.2e-06 Score=85.64 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcc------cHHHHHHHHHHHHHHHHHHHHHHHH
Q 012875 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEI------SYDIVEDIMVQGDRLRGTLQELQDA 367 (454)
Q Consensus 294 LDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~------~rdlae~Iv~E~dRL~~ll~qL~~~ 367 (454)
+.++...+++++..+++++++++|||||||++|+++.++|.......+. ..++.+.|.++.++|.+++.+|.++
T Consensus 137 l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~ 216 (380)
T PRK09303 137 LRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEV 216 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888889999999999999999999999999966554322 4667788999999999999999999
Q ss_pred hhcccccc
Q 012875 368 VFLTKANI 375 (454)
Q Consensus 368 v~p~~~~i 375 (454)
.+.....+
T Consensus 217 ~~~~~~~~ 224 (380)
T PRK09303 217 GRTRWEAL 224 (380)
T ss_pred HHhhcCCc
Confidence 88765443
No 9
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=98.29 E-value=1.4e-05 Score=85.88 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=83.4
Q ss_pred cEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcccccccccchhhhhhhhcccHHHhhHH
Q 012875 202 AVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNA 281 (454)
Q Consensus 202 a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~e~~qIQ~~~~e~~~~~~f~~dqRl~a 281 (454)
.+++||..++-++|+++.+ +... . .. |+.+++..+
T Consensus 412 ~l~vPL~~~~~~~G~l~l~-----------~~~~-~---------~~------------------------~~~e~~~lL 446 (679)
T TIGR02916 412 WLIVPLISGEELVGFVVLA-----------RPRT-A---------GE------------------------FNWEVRDLL 446 (679)
T ss_pred eEEEEeccCCEEEEEEEEe-----------cCCC-C---------CC------------------------CCHHHHHHH
Confidence 6789999999999999998 2101 0 11 222444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHH
Q 012875 282 INICRSLAMAYVMDQKSMLLQQS--SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRG 359 (454)
Q Consensus 282 ~~IA~tLAmA~vLDqr~~~Lqqq--l~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ 359 (454)
..+++.++.+....+..+.++++ .+..+++.+.++|+|||||+.|..+.+...+.....+...++.+.|-...+|+++
T Consensus 447 ~~l~~q~a~~l~~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ 526 (679)
T TIGR02916 447 KTAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKK 526 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 56666555555443333333322 2333778899999999999999998888776555445556777888888999999
Q ss_pred HHHHHHHHh
Q 012875 360 TLQELQDAV 368 (454)
Q Consensus 360 ll~qL~~~v 368 (454)
++.++.+..
T Consensus 527 ll~~l~~~~ 535 (679)
T TIGR02916 527 LLAQLRSKG 535 (679)
T ss_pred HHHHHHhcc
Confidence 999987643
No 10
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.21 E-value=2.3e-05 Score=87.67 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=100.2
Q ss_pred ccCCCCcEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcccccccccchhhhhhhhcccH
Q 012875 196 VVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSA 275 (454)
Q Consensus 196 ~lps~~a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~e~~qIQ~~~~e~~~~~~f~~ 275 (454)
-+|..+..++|+.-.+-++|+|-++ .. + .+. . ..
T Consensus 588 Tlpg~~~~~lPl~~~~~~~gvlgv~-----------~~-~-----------~~l---l--------------------~p 621 (890)
T COG2205 588 TLPGAKYLYLPLKSGGKVLGVLGVE-----------PG-L-----------SPL---L--------------------AP 621 (890)
T ss_pred CCCCCceeEeecccCCceEEEEEec-----------CC-C-----------Ccc---C--------------------Ch
Confidence 4688889999999999999999999 22 1 111 1 11
Q ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC--cccHHHH
Q 012875 276 DQRLNAINICRSLAMAY-----VMDQKSMLLQQSSWQN-NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS--EISYDIV 347 (454)
Q Consensus 276 dqRl~a~~IA~tLAmA~-----vLDqr~~~Lqqql~qq-~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pd--e~~rdla 347 (454)
++|..+.+++.-+|+|. +-+.++..|+.+.++- ..+++.+.|.||+|||+|.|=+..|+.....- +...+++
T Consensus 622 ~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl 701 (890)
T COG2205 622 EQRRLLDAVLTQIALALERVTLAEEAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELL 701 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHH
Confidence 44444445553333332 1233555666666554 78999999999999999999999998877654 3468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012875 348 EDIMVQGDRLRGTLQELQDAVFLTKANI 375 (454)
Q Consensus 348 e~Iv~E~dRL~~ll~qL~~~v~p~~~~i 375 (454)
..|..|++||.+++.-|++.-++...++
T Consensus 702 ~~I~ees~~L~rlV~NLLdmTRi~sG~~ 729 (890)
T COG2205 702 SSIREESERLTRLVTNLLDMTRLQSGGV 729 (890)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCc
Confidence 9999999999999999999999988765
No 11
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=98.17 E-value=5.3e-06 Score=83.12 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=56.6
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 308 q~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
+++++++++|||||||++|+++.++|......++......+.|..+.+||.+++.+|.++.+...
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~ 268 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEA 268 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999876555556677889999999999999999999987644
No 12
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.01 E-value=2.9e-05 Score=87.57 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 294 LDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
+.+.+..+++....+.+++++++|||||||++|++++++|... ..++..++.++.|.++++||.+++.++.++.++..
T Consensus 436 L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~-~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 436 LQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQT-SDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455666677779999999999999999999999998664 35667788999999999999999999999887654
No 13
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.98 E-value=2.2e-05 Score=88.38 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 293 vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
.+++.+..+.++...+++++++++|||||||++|+|+.++|......++...+..+.+...++||.+++.++.++.++..
T Consensus 697 ~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~ 776 (1197)
T PRK09959 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIES 776 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555666778999999999999999999999999766555555567888899999999999999999887654
Q ss_pred c
Q 012875 373 A 373 (454)
Q Consensus 373 ~ 373 (454)
.
T Consensus 777 ~ 777 (1197)
T PRK09959 777 G 777 (1197)
T ss_pred C
Confidence 3
No 14
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.94 E-value=3e-05 Score=74.41 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
++++.+++||+||||++|.+|.++|..+.. ++...+..+.|..+.+||.+++.+|.....+..
T Consensus 131 ~~~~~~iaHelr~pL~~i~~~~~~l~~~~~-~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~ 193 (348)
T PRK11073 131 RDLVRGLAHEIKNPLGGLRGAAQLLSKALP-DPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT 193 (348)
T ss_pred HHHHHhhhHhhcChHHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 778999999999999999999999887654 455678899999999999999999987655543
No 15
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.87 E-value=7.4e-05 Score=84.13 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 293 vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
.+.+..+.+++....+.+++++++|||||||++|.|+.++|.... .++...++++.|...++||.+++.+|.++.++..
T Consensus 432 ~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~-~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~ 510 (924)
T PRK10841 432 SLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 510 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444555555566678999999999999999999999986543 3455678899999999999999999999987654
No 16
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.86 E-value=4.4e-05 Score=82.66 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=57.3
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 306 WQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 306 ~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
..+.+++++++|||||||++|.||+++|.+.. .++..++.++.|.+++++|.+++.++.++.+....
T Consensus 291 ~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 357 (919)
T PRK11107 291 RIKSEFLANMSHELRTPLNGVIGFTRQTLKTP-LTPTQRDYLQTIERSANNLLAIINDILDFSKLEAG 357 (919)
T ss_pred HHHHHHHHHhhHhhcccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33578999999999999999999999987653 45567788999999999999999999998876543
No 17
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.81 E-value=0.00016 Score=79.23 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 300 ~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
.+++....+.+++++++|||||||++|.|+.++|... ..++..+++++.|.+.++||.+++..+.++.++...
T Consensus 456 ~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~ 528 (968)
T TIGR02956 456 EAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT-GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG 528 (968)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445568899999999999999999999998654 445667789999999999999999999999876543
No 18
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.81 E-value=0.00015 Score=78.81 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
+..++....+.+++++++|||||||++|+++..+|... ..++..+++++.|...++||.+++.+|.++.++...
T Consensus 389 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~-~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~ 462 (921)
T PRK15347 389 QRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNT-PLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESG 462 (921)
T ss_pred HHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445567899999999999999999999998754 345677899999999999999999999999886543
No 19
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.79 E-value=0.00016 Score=75.43 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 300 ~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
..++...+.++++++++|||||||++|+++.+.|.... +....+..+.|+.+.+|+.+.+..+.+......
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~--~~~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~ 328 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGK--QMSVEQAEPIMLEQISRISQQIGYYLHRASMRS 328 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566688999999999999999999999886532 223344566788899999999888877765544
No 20
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.78 E-value=0.00018 Score=78.56 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
...++....+.+++++++|||||||++|+|++++|... ..++..++.++.|...++||.+++.++.++.+..
T Consensus 435 ~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~ 506 (914)
T PRK11466 435 AEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN-PALNAQRDDLRAITDSGESLLTILNDILDYSAIE 506 (914)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445568899999999999999999999998764 3455778899999999999999999999886544
No 21
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.78 E-value=0.00014 Score=70.51 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 295 Dqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
.+-...+++..+++++++++++||+||||++|+++.+++..... .-.+.+..+.+|+.+.+.++..+.+...
T Consensus 124 n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~------~~~~~~~~~~~~l~~~i~~ll~~~r~~~ 195 (356)
T PRK10755 124 NQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH------IDVAPLIARLDQMMHTVEQLLQLARAGQ 195 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44445555666677889999999999999999999998764322 2245677888999999998888877543
No 22
>PRK10337 sensor protein QseC; Provisional
Probab=97.73 E-value=0.00018 Score=71.63 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
..+++...++++++.+++||+|+||++|++.++.+......++......+.|..+.+|+.+++++|..+.++..
T Consensus 228 ~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~ 301 (449)
T PRK10337 228 ARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDS 301 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566667778899999999999999999999886543333334456778889999999999999999988653
No 23
>PRK10604 sensor protein RstB; Provisional
Probab=97.66 E-value=0.00015 Score=73.54 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 294 LDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
+.+=...+++....+++++++++|||||||++|++...++. +... +-.+.|.++.++|.++++++..+.+....
T Consensus 198 fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~-~~~~-----~~~~~i~~~~~~l~~li~~ll~~~rl~~~ 271 (433)
T PRK10604 198 FNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSD-NLSA-----AESQALNRDIGQLEALIEELLTYARLDRP 271 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhc-CCCc-----HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33434555666677789999999999999999999998875 2222 12244888999999999999998876544
No 24
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.66 E-value=0.00021 Score=70.22 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
..|++...+.++..++++|++||||++|++++.++...-.+.+...+..+.+..|.+||.++++++.++.+....
T Consensus 232 ~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 306 (457)
T TIGR01386 232 GRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNG 306 (457)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345556666688999999999999999999999987655555556678889999999999999999988766543
No 25
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.64 E-value=0.00031 Score=70.37 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=59.6
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 012875 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR 377 (454)
Q Consensus 307 qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~i~r 377 (454)
..+++++++.|++||||++|++|.+++..+ ..+....+..+.|..+.+||.+++.++..+.++....+..
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 458 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQWQP 458 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCccce
Confidence 346789999999999999999999998877 5556677888999999999999999999988876655443
No 26
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.64 E-value=0.00015 Score=78.43 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=56.8
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 305 l~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
...+.+++++++|||||||++|.||+++|.... .++..++..+.|...++||.+++.++.++.++..
T Consensus 280 ~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~ 346 (779)
T PRK11091 280 SRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMER 346 (779)
T ss_pred HHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhC
Confidence 345688999999999999999999999987543 3455678899999999999999999999887654
No 27
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.64 E-value=0.00028 Score=69.81 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 300 ~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
.+++..+++..++++++|+|||||+.|+.++.++.. ....+.+.|..+.+++.+++.++.+.++..
T Consensus 221 ~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~------~~~~~~~~i~~~~~~~~~~i~~~l~~~r~~ 286 (435)
T PRK09467 221 GIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSE------EDGYLAESINKDIEECNAIIEQFIDYLRTG 286 (435)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhccc------chHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444556778999999999999999999887742 235577889999999999999999888754
No 28
>PRK09835 sensor kinase CusS; Provisional
Probab=97.62 E-value=0.0003 Score=70.20 Aligned_cols=82 Identities=7% Similarity=0.101 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 292 ~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
..+.+-...+++...++.+++++++||||+||+.|.+.+..+.......+...+.+..++.|..|+.+++.++.++.+..
T Consensus 246 ~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~ 325 (482)
T PRK09835 246 LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQAD 325 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445566667777889999999999999999999998877655555667778889999999999999999988765
Q ss_pred cc
Q 012875 372 KA 373 (454)
Q Consensus 372 ~~ 373 (454)
..
T Consensus 326 ~~ 327 (482)
T PRK09835 326 NN 327 (482)
T ss_pred CC
Confidence 43
No 29
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.46 E-value=0.00087 Score=66.41 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012875 290 MAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369 (454)
Q Consensus 290 mA~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~ 369 (454)
+|..+.+-...|++...++++++++++||+||||++|+.+..++.... ...+-++.|..+.+||.+++.+|.++.+
T Consensus 225 l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~----~~~~~~~~i~~~~~~l~~~i~~l~~~~~ 300 (461)
T PRK09470 225 AGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQ----GESKELERIETEAQRLDSMINDLLVLSR 300 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhcc----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555667777888889999999999999999999999876542 2233567788999999999999999887
Q ss_pred cc
Q 012875 370 LT 371 (454)
Q Consensus 370 p~ 371 (454)
..
T Consensus 301 ~~ 302 (461)
T PRK09470 301 NQ 302 (461)
T ss_pred hh
Confidence 43
No 30
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.42 E-value=0.00044 Score=64.19 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHM-KRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL-~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
.+++++++|+|||||++|+++.++|.... ..++...+.++.|....++|.+++..+..+.+...
T Consensus 115 ~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~ 179 (333)
T TIGR02966 115 RDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLES 179 (333)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999988764 23344556788899999999999999998876443
No 31
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.35 E-value=0.00042 Score=72.34 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=56.2
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012875 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS-EISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (454)
Q Consensus 308 q~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pd-e~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~ 374 (454)
.+.+++|+.||+|+||||+|+|=.-|-.---.| +..-.....=+.|.+||-+++.+|..+.++....
T Consensus 225 rRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~ 292 (459)
T COG5002 225 RREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNAR 292 (459)
T ss_pred HHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchh
Confidence 378999999999999999999988776544333 3577777788899999999999999999988764
No 32
>PRK13560 hypothetical protein; Provisional
Probab=97.34 E-value=0.00069 Score=71.51 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS 340 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pd 340 (454)
+.|++.+.++.+++++++|+|||||++|.+|..++...+..+
T Consensus 596 ~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~ 637 (807)
T PRK13560 596 EKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDE 637 (807)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCH
Confidence 456666777899999999999999999999999988776543
No 33
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=97.32 E-value=0.00062 Score=74.72 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCccc-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEIS-----YDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~-----rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~i~r~ 378 (454)
++-+.-++||||||||=|+==|.-|++|+.++-.. ...++.|++|+..+++++++|-.+.+.-+..+.+.
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p~~e~~ 561 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPKLEKS 561 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 45666789999999999999999999999997444 44577999999999999999999999888877664
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.24 E-value=0.0023 Score=63.84 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
..+++....+++++++++||+||||++|+++.+.|...... ...+..+.|..+.+||.+++..+..+....
T Consensus 231 ~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~--~~~~~l~~~~~~~~~l~~li~~l~~l~~~~ 301 (466)
T PRK10549 231 STLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK--FTPESVASLQAEVGTLTKLVDDLHQLSLSD 301 (466)
T ss_pred HHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455568899999999999999999999999876543 345667889999999999999998776543
No 35
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=97.19 E-value=0.0034 Score=66.03 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
++....+.||+||||++|+++++++.+....++...+.++.|.+.++|+.+.+.++.+..++..
T Consensus 303 ~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~~ 366 (495)
T PRK11644 303 RDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPRQ 366 (495)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4566777789999999999999987653333344558889999999999999999887666554
No 36
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=97.01 E-value=0.0041 Score=68.77 Aligned_cols=95 Identities=18% Similarity=0.118 Sum_probs=80.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhh--cCCCcccHHHHHHHHHHH
Q 012875 277 QRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH--MKRSEISYDIVEDIMVQG 354 (454)
Q Consensus 277 qRl~a~~IA~tLAmA~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkR--L~pde~~rdlae~Iv~E~ 354 (454)
-|..++.|+ |-.|..|++-+..|++...+.+.+.-.+.|-+||||..|..|+++|..| =..|++..+....|++..
T Consensus 495 LR~aiv~iv--l~~aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~ 572 (750)
T COG4251 495 LRKAIVGIV--LRHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLT 572 (750)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHH
Confidence 344444455 7777788888888888888889999999999999999999999999999 666788888888899999
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 012875 355 DRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 355 dRL~~ll~qL~~~v~p~~~ 373 (454)
-+++++++.+.-...++..
T Consensus 573 ~~~~~lidd~l~~s~l~~~ 591 (750)
T COG4251 573 SLMQQLIDDLLTYSKLGLT 591 (750)
T ss_pred HHHHHHHHHHhhhhhhccc
Confidence 9999999999887766554
No 37
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.97 E-value=0.0033 Score=62.14 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
.+++++++|++||||++|++++++|... .+.+...+.++.|..+.+|+..++.++..+.+...
T Consensus 257 ~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 319 (475)
T PRK11100 257 EQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLEQ 319 (475)
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5567899999999999999999998873 34556677899999999999999999998876543
No 38
>PRK13559 hypothetical protein; Provisional
Probab=96.87 E-value=0.0034 Score=60.95 Aligned_cols=75 Identities=7% Similarity=0.054 Sum_probs=55.1
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHH
Q 012875 306 WQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384 (454)
Q Consensus 306 ~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~i~r~~ee~l~ 384 (454)
+++++++..+.|++||||++|.++..++. ..+...+.++.|....++|.++++.|.+.......++..+-++.+.
T Consensus 168 ~~~~~l~~~l~H~~~n~L~~i~~~~~l~~----~~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~~~~v~l~~~~~~~~~ 242 (361)
T PRK13559 168 AHERRLAREVDHRSKNVFAVVDSIVRLTG----RADDPSLYAAAIQERVQALARAHETLLDERGWETVEVEELIRAQVA 242 (361)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccHHHHHHHHHH
Confidence 34467888999999999999999999886 1234456788888888889888887776665555555444444443
No 39
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.79 E-value=0.0069 Score=66.59 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 294 LDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
+.+-...+++...+.++++.+++||+||||++|+++.+.+... ..++...+.++.+..+.+||.+++.++.++.++.
T Consensus 471 fn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~-~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle 547 (703)
T TIGR03785 471 FAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQ-ALEQEKQKYLERAREGTERLSMILNNMSEATRLE 547 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333455666677778899999999999999999999998644 3344556678899999999999999999887754
No 40
>PRK13557 histidine kinase; Provisional
Probab=96.73 E-value=0.0069 Score=60.90 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=52.6
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEI----SYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 307 qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~----~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
....++..++|++||||+.|.+|..+|...+...+. -..+++.|..+.+|+.+++.+|..+.+..+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~~ 231 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQR 231 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 346788899999999999999999999877664332 235677788889999999999988766443
No 41
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.14 E-value=0.037 Score=54.45 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=40.0
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012875 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 308 q~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v 368 (454)
..+.+..++|+|||||++|.++..+|..+ ..+.....+.+.+-+-.++..+.+..+.+++
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRR-GDDAGNPASAAMLQQALSAGREHMEALRQVI 335 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36678888999999999999999998776 3333334444444444455555555555554
No 42
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.69 E-value=0.071 Score=48.28 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=52.0
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 307 qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
.++.++.+++|++||||++++++..++... ..+......+.|..+.+|+.+++.++..+.+....
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 178 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG--LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAG 178 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999998855554 11114666777778999999999999888887664
No 43
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.85 E-value=0.24 Score=54.73 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHH---HHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSK---MLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAk---LLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~i 375 (454)
++..++++|||.+||+|||||+. .|+.|-+. +...+-.+.|..=.||+..+..+|-.+++-.....
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~-e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a~ 453 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRT-EEARENLERISALTERMAAITAHLKSFARKSRDAA 453 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCCh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 88899999999999999999975 45554433 44555567788888999999999999988766643
No 44
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=94.32 E-value=1.4 Score=35.56 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCccceeeecccccCCcchhHHHHHhhccc---
Q 012875 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ--- 193 (454)
Q Consensus 117 F~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~~~~~il~g~~~lP~~~~aaed~L~~q~--- 193 (454)
..++++.=++.+.+.+ +..+++||+... +...+.++..|.+.....-. +|.........+...+
T Consensus 2 l~~l~~~i~~~l~~~~-~~~~~~l~~~d~-----~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~ 68 (129)
T PF13492_consen 2 LDELLERILELLRELL-GADRAALFLLDE-----DGNRLRVVAGWGGDPRLSES-------LPEDDPLIGRALETGEPVS 68 (129)
T ss_dssp HHHHHHHHHHHHHHHS-T-SEEEEEEEET-----TCECEEEEEEESS-GCGHHC-------EETTSHHHHHHHHHTS-EE
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEEEEC-----CCCEEEEEEEeCCCcccccc-------CCCCccHHHHHHhhCCeEE
Confidence 4456666678899999 999999999862 34578888988332211000 1110000000000000
Q ss_pred ------ccccCCCCcEEeecccCCeEEEEEEee
Q 012875 194 ------VQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 194 ------~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
....+....+++||+.++-++|+|...
T Consensus 69 ~~~~~~~~~~~~~s~~~vPl~~~~~~~Gvl~~~ 101 (129)
T PF13492_consen 69 VPDIDERDFLGIRSLLVVPLRSRDRVIGVLCLD 101 (129)
T ss_dssp ESTCCC-TTTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred ecccccccCCCCCEEEEEEEeECCEEEEEEEEE
Confidence 001333467899999999999999999
No 45
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=94.08 E-value=0.2 Score=50.98 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHH
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKML 333 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLL 333 (454)
.+.+..+.||+||||++|++|.++.
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~ 364 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLK 364 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhC
Confidence 3455678999999999999998864
No 46
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=93.47 E-value=2.4 Score=44.91 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCcEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcccccccccchhhhhhhhcccHHHhh
Q 012875 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (454)
Q Consensus 200 ~~a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~e~~qIQ~~~~e~~~~~~f~~dqRl 279 (454)
.....+||.++.-.+|+++...|. + .. |+.+++.
T Consensus 298 ~~~~~~~l~~~~~~~G~~~~~~~~-----------~-----------~~------------------------l~~~~~~ 331 (569)
T PRK10600 298 GTTLKWRLSDKHGQYGILLATLPQ-----------G-----------RH------------------------LSHDQQQ 331 (569)
T ss_pred CceEEEEeecCCcceEEEEEEcCC-----------C-----------CC------------------------CCHHHHH
Confidence 457899999999999999877110 1 11 2234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHH
Q 012875 280 NAINICRSLAMAYVMDQKSMLLQQ-SSW-QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR-SEISYDIVEDIMVQGDR 356 (454)
Q Consensus 280 ~a~~IA~tLAmA~vLDqr~~~Lqq-ql~-qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~p-de~~rdlae~Iv~E~dR 356 (454)
.+..++.-|+.+..+++.....++ .+. +..+....|-+.|.++|++|++-..+|...... ++...++.+.|..+.++
T Consensus 332 ll~~l~~~l~~~l~~~~~~~~~~~~~~~~er~~iarelhd~i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 411 (569)
T PRK10600 332 LVDTLVEQLTATLALERQQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNA 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 555677666666655543322111 111 223334455556777888888877666433221 23456677777777788
Q ss_pred HHHHHHHHHHHhhc
Q 012875 357 LRGTLQELQDAVFL 370 (454)
Q Consensus 357 L~~ll~qL~~~v~p 370 (454)
+.+.+.+|....++
T Consensus 412 ~~~~lr~ll~~~r~ 425 (569)
T PRK10600 412 SWRQLRELLTTFRL 425 (569)
T ss_pred HHHHHHHHHHHcCc
Confidence 77777777765544
No 47
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=90.99 E-value=11 Score=40.29 Aligned_cols=32 Identities=3% Similarity=-0.029 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 112 ~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
..+.|...+.+.=++.+.+.+ ++.++.||+..
T Consensus 15 ~~~~dl~~lL~~il~~l~~~l-~a~~~~I~L~d 46 (534)
T TIGR01817 15 SAPTRLEKTLANVLNVLSNDL-GMRHGLITLSD 46 (534)
T ss_pred hccCCHHHHHHHHHHHHHHhc-CCCEEEEEEEC
Confidence 344566666677778888899 99999999975
No 48
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=90.28 E-value=1.3 Score=45.96 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012875 310 ARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369 (454)
Q Consensus 310 ~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~ 369 (454)
+.+..+.|+++|||++|.++.++- ...+..+.|..+++++++++..+...+.
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~--------~~~~~~~~i~~~s~~~~~l~~~l~~~~~ 391 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMK--------EYDRVLEMVQGESQAQQQLIDSLREAFA 391 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhc--------hhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445668999999999999987752 2245788888999999999988877654
No 49
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=87.55 E-value=11 Score=29.05 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 117 F~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+..+++.-++.+...+ +.+++.||+..
T Consensus 2 ~~~~~~~~~~~l~~~~-~~~~~~i~~~~ 28 (149)
T smart00065 2 LEELLQTILEELRQLL-GADRVLIYLVD 28 (149)
T ss_pred HHHHHHHHHHHHHHHh-CCceEEEEEEe
Confidence 4566777778888888 89999999987
No 50
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=80.58 E-value=40 Score=35.10 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHH----HHHHHHHhhhcCCC-cccHHHHHHHHHHHH
Q 012875 281 AINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSI----QTLSKMLSLHMKRS-EISYDIVEDIMVQGD 355 (454)
Q Consensus 281 a~~IA~tLAmA~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAI----RTfAkLLlkRL~pd-e~~rdlae~Iv~E~d 355 (454)
+..++..++.+..+++.....++.. .-.....++|++++||..+ ++-.+++...+..+ +...+++..+....+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 412 (565)
T PRK10935 335 MNNVAQMLGRGLYFNQAQKQQQQLL--LMEERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALS 412 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 3445555666555544333322211 1122344777777666555 44455566665533 222233333333444
Q ss_pred HHHHHHHHHH
Q 012875 356 RLRGTLQELQ 365 (454)
Q Consensus 356 RL~~ll~qL~ 365 (454)
++.+.+..+.
T Consensus 413 ~~~~~l~~l~ 422 (565)
T PRK10935 413 DAYRQLRELL 422 (565)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 51
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=80.32 E-value=5.2 Score=33.31 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCC
Q 012875 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164 (454)
Q Consensus 117 F~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~ 164 (454)
..++.+.=++.+++.+ +.++++||+-.. +...+..+..++..
T Consensus 2 l~~~l~~~~~~l~~~l-~~~~~~i~~~d~-----~~~~~~~~~~~~~~ 43 (154)
T PF01590_consen 2 LDELLQRILRELAELL-GADRASIFLLDP-----DGNRLYSVAGVGLP 43 (154)
T ss_dssp HHHHHHHHHHHHHHHH-TESEEEEEEEET-----TTTEEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEEEec-----CCCeEEEEEeeccc
Confidence 4566677778888899 999999986542 22455566666653
No 52
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=79.37 E-value=22 Score=39.48 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKR----SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~p----de~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~ 374 (454)
++.|-.++|||..||.|+-.| +|.-|+.- ....+...+.|--=.+|+...+..|..+.+-+..+
T Consensus 452 GqTmTslaHEinQPLnAmsaY--LFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~ 519 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAY--LFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSD 519 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHH--HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 888999999999999999877 44444332 33444555566666788888888888888776655
No 53
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=77.99 E-value=15 Score=39.44 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=60.0
Q ss_pred cEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcccccccccchhhhhhhhcccHHHhhHH
Q 012875 202 AVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNA 281 (454)
Q Consensus 202 a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~e~~qIQ~~~~e~~~~~~f~~dqRl~a 281 (454)
-+.+||..++-++|+|-+. +... .. |+++....+
T Consensus 112 ~l~vPL~~~~~~~GvL~l~-----------~~~~-----------~~------------------------f~~~~~~~l 145 (509)
T PRK05022 112 CMGLPLFVDGRLIGALTLD-----------ALDP-----------GQ------------------------FDAFSDEEL 145 (509)
T ss_pred EEEEEEEECCEEEEEEEEe-----------eCCC-----------Cc------------------------CCHHHHHHH
Confidence 4678999999999999998 3201 12 333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHH
Q 012875 282 INICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTL 361 (454)
Q Consensus 282 ~~IA~tLAmA~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll 361 (454)
..+|..++.|...-++...++++..+......-+.++++ . -..|+-++..++++.
T Consensus 146 ~~~a~~~a~Al~~a~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~--------~~~iig~s~~~~~~~ 200 (509)
T PRK05022 146 RALAALAAATLRNALLIEQLESQAELPQDVAEFLRQEAL-----------------K--------EGEMIGQSPAMQQLK 200 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------------c--------CCceeecCHHHHHHH
Confidence 667777777777767666666666555443322222221 0 133556677777777
Q ss_pred HHHHHHhhc
Q 012875 362 QELQDAVFL 370 (454)
Q Consensus 362 ~qL~~~v~p 370 (454)
+++..+...
T Consensus 201 ~~i~~~a~~ 209 (509)
T PRK05022 201 KEIEVVAAS 209 (509)
T ss_pred HHHHHHhCC
Confidence 777776543
No 54
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=70.77 E-value=13 Score=30.70 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.7
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
..+.+||+.++-++|+|...
T Consensus 102 s~l~vPl~~~~~~~Gvl~l~ 121 (148)
T PF13185_consen 102 SILCVPLRSGGEVIGVLSLY 121 (148)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeECCEEEEEEEEe
Confidence 57899999999999999998
No 55
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=67.51 E-value=34 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=18.6
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.-+++||+.++-++|.|.+.
T Consensus 116 ~~l~vPl~~~~~~~G~l~~~ 135 (175)
T COG2203 116 SYLGVPLIAQGELLGLLCVH 135 (175)
T ss_pred HheeeeeeECCEeeEEeeee
Confidence 46899999999999999999
No 56
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=63.77 E-value=1.4e+02 Score=32.65 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=70.5
Q ss_pred ccHHHhhHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHh---------------hHHHHHHHHHhhhhhHHHHHHH
Q 012875 273 FSADQRLNAINICRSLA---MAYVMD---QKSMLLQQSSWQNN---------------ARMSNLVEQIRGPLSSIQTLSK 331 (454)
Q Consensus 273 f~~dqRl~a~~IA~tLA---mA~vLD---qr~~~Lqqql~qq~---------------~~la~L~HQiRNPLTAIRTfAk 331 (454)
|+..+-+.+...++++. +..++. .=++.|++|+.+++ +.+..|=.||-.-.|||||=|.
T Consensus 247 fs~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~ 326 (497)
T COG3851 247 FSHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAG 326 (497)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 66777777766666632 222222 22367778887773 3344445577788999999998
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012875 332 MLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375 (454)
Q Consensus 332 LLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~i 375 (454)
++.+ +.+.+.-...|..|-.=+-|+-+-+.+|..-++|...+=
T Consensus 327 ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~~LDd 369 (497)
T COG3851 327 IVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPRQLDD 369 (497)
T ss_pred HHHh-ccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 7765 777777777777777778889999999998888876543
No 57
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=58.78 E-value=1.5e+02 Score=28.52 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccC----CcceeEEEeeeCCCCc----cceeeeccccc-CC
Q 012875 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVM----DRLELRRVVSYPGVNA----TDIVVLVGNFN-MP 179 (454)
Q Consensus 109 ~lm~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~----gqleL~pVa~YP~~~~----~~~~il~g~~~-lP 179 (454)
++|..=.+|+.=...=-.|+-..++.-.|++.|+..-++++- |.+..++|..==+.-. ..-.+.+.+.. -|
T Consensus 25 ~l~~~e~~~ianlan~sall~~~l~~~nW~GFYl~~~~~LvLgPFqG~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~ 104 (163)
T COG1956 25 ALLAGETNFIANLANASALLKERLPDVNWVGFYLLEGDELVLGPFQGKVACVRIPFGKGVCGTAAATGETVRVDDVHAFP 104 (163)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhccCCceEEEEEecCCeEEEecccCCcceEEeccCcchhHHHHhcCCeEEecccccCC
Confidence 456666666666666666777778778999999997432221 2222222221001000 00011112211 11
Q ss_pred cchhHHHHHhhcccccccCCCCcEEeecccCCeEEEEEEee
Q 012875 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 180 ~~~~aaed~L~~q~~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
-. -.-.-.+..-+|+|++++|-++|+|=.+
T Consensus 105 gh-----------iaCD~as~SEIVvPi~~~g~~iGvlDiD 134 (163)
T COG1956 105 GH-----------IACDAASNSEIVVPIFKDGKLIGVLDID 134 (163)
T ss_pred Cc-----------cccccccCceEEEEEEECCEEEEEEecC
Confidence 00 0001123357899999999999999888
No 58
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.92 E-value=35 Score=37.70 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcC--------------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMK--------------RSEISYDIVEDIMVQGDRLRGTLQELQD 366 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~--------------pde~~rdlae~Iv~E~dRL~~ll~qL~~ 366 (454)
+..+++|.-|+.+| +=|+++-..|..+++ .++..+|+-+.+-.|.|+|.+++.=+-.
T Consensus 417 r~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~ 487 (508)
T KOG3091|consen 417 RAKLDTLLAQLNAP-NQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKG 487 (508)
T ss_pred HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77889999999998 667776666655543 3578889999999999888887765433
No 59
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=54.55 E-value=1.8e+02 Score=33.44 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 111 m~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+..+.|..++.+.=++++.+.+ +.+.++|||..
T Consensus 12 L~s~~dL~e~L~~Iv~~~~~~l-~~d~~sI~L~D 44 (748)
T PRK11061 12 VASAPRLNEALDILVTETCLAM-DTEVCSVYLAD 44 (748)
T ss_pred HhccCCHHHHHHHHHHHHHHHh-CCCEEEEEEEE
Confidence 3345567777777778899999 99999999985
No 60
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=44.91 E-value=1.2e+02 Score=28.15 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012875 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 300 ~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v 368 (454)
....++.+..+..+.++.++.+=+.-|..+-.-...=-.....-++..+.|+.|..||.++.+++.+-+
T Consensus 4 ~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 72 (157)
T PF04136_consen 4 QYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKL 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677778888999988888888777777666666667788899999999999999999998764
No 61
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=41.87 E-value=1.6e+02 Score=32.92 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=17.8
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
..+++||+.++-++|+|.+.
T Consensus 296 s~l~vPL~~~~~v~GvL~l~ 315 (686)
T PRK15429 296 TLCLLPLMSGDTMLGVLKLA 315 (686)
T ss_pred EEEEEeEEECCEEEEEEEEe
Confidence 35779999999999999987
No 62
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=39.75 E-value=1.7e+02 Score=26.63 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=18.0
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.-+-+|+..++-++|++-..
T Consensus 71 ~GinlPI~~~g~~iGviGIt 90 (135)
T PF05651_consen 71 PGINLPIIFNGEVIGVIGIT 90 (135)
T ss_pred cceeeeEEECCEEEEEEEEe
Confidence 45789999999999999888
No 63
>PRK13558 bacterio-opsin activator; Provisional
Probab=38.90 E-value=99 Score=33.50 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=18.5
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.-..+||++++.++|+|++.
T Consensus 390 s~~~vPL~~~g~~~GvL~v~ 409 (665)
T PRK13558 390 AVAAVPLVYRETTYGVLVVY 409 (665)
T ss_pred eEEEEeEEECCEEEEEEEEe
Confidence 45789999999999999998
No 64
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=35.22 E-value=3.1e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHH
Q 012875 286 RSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSI 326 (454)
Q Consensus 286 ~tLAmA~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAI 326 (454)
+++.+.-++|-....+-+++.+-.+.++.+..+.+.+...+
T Consensus 19 Ha~fi~~~L~p~e~~~i~~a~~f~~~F~~ll~~a~~~~~~~ 59 (124)
T PF11155_consen 19 HAIFIRAGLDPKEKELIQEADEFKQQFDKLLKKARSLSNGL 59 (124)
T ss_dssp HHHHHHHHB-TT-HHHHHHHHHHHHHHHHHHHHHHHCHHTC
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555566666666666666666666777777776665433
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.99 E-value=2.3e+02 Score=31.73 Aligned_cols=18 Identities=11% Similarity=0.157 Sum_probs=16.2
Q ss_pred EEeecccCCeEEEEEEee
Q 012875 203 VVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 203 ~VlPLv~~~~VVG~LVaE 220 (454)
..+||+..+-|+|.|+.-
T Consensus 118 lgvPl~~~~~v~G~l~l~ 135 (686)
T PRK15429 118 CLMPLAAEGHIFGGCEFI 135 (686)
T ss_pred EEeceeeCCeeEEEEEEE
Confidence 347999999999999998
No 66
>PF13943 WPP: WPP domain
Probab=30.25 E-value=2.3e+02 Score=25.30 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=32.0
Q ss_pred HHhhHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHh----------hhhhHHHHHHHHHhhhc
Q 012875 276 DQRLNAIN-ICRSLAMAYVMDQKSMLLQ-QSSWQNNARMSNLVEQIR----------GPLSSIQTLSKMLSLHM 337 (454)
Q Consensus 276 dqRl~a~~-IA~tLAmA~vLDqr~~~Lq-qql~qq~~~la~L~HQiR----------NPLTAIRTfAkLLlkRL 337 (454)
.+|..+++ ...+|.--+++-+|-..|. ++....-+.+...+...- .-..+++.|+|-..+++
T Consensus 10 ~tR~~vv~Rm~~nLss~s~~s~ryg~l~~eeA~~~Ak~IEe~AF~~A~~~~~~~~d~dg~e~vq~YaKE~Sklm 83 (99)
T PF13943_consen 10 RTRDAVVERMTENLSSPSILSKRYGTLPKEEAEEAAKRIEEEAFAAANQHYETEPDGDGIEAVQLYAKEISKLM 83 (99)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHH
Confidence 55555555 7777877777766542222 233333333333333222 23566777776655543
No 67
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=26.38 E-value=6.8e+02 Score=26.18 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=10.7
Q ss_pred EeecccCCeEEEEEEee
Q 012875 204 VFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 204 VlPLv~~~~VVG~LVaE 220 (454)
-+|+..++--+|.|...
T Consensus 308 ~~~~~~~~~~~g~l~~~ 324 (565)
T PRK10935 308 ILPLTMEDTVLGYLHWQ 324 (565)
T ss_pred EEEEeeCCcceEEEEec
Confidence 45666666666666655
No 68
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=24.72 E-value=58 Score=30.75 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred hhhcccHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCc--ccHH
Q 012875 269 RVYKFSADQRLNAINICRSLAMAYVMDQ-KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE--ISYD 345 (454)
Q Consensus 269 ~~~~f~~dqRl~a~~IA~tLAmA~vLDq-r~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde--~~rd 345 (454)
.|+-|+..||....++- |=+.|+- ...|+-..+.++. .-.||.|+.|+++||..+. .+-.
T Consensus 37 ~VlGFn~rQR~~Fln~v----MR~G~~~f~~~w~~~~Lr~Ks-------------~~ei~aY~~LFm~HL~E~~~d~s~t 99 (145)
T PF06461_consen 37 EVLGFNPRQRKAFLNAV----MRYGMGAFDWKWFVPRLRGKS-------------EKEIRAYGSLFMRHLCEPGTDNSDT 99 (145)
T ss_pred EEeccCHHHHHHHHHHH----HHHCcCcccchHHhhhhcccc-------------HHHHHHHHHHHHHHhcCCCcCCCCc
Confidence 36779999999998865 5555531 3355554444442 2358999999999999553 4677
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012875 346 IVEDIMVQGDRLRGTLQEL 364 (454)
Q Consensus 346 lae~Iv~E~dRL~~ll~qL 364 (454)
.++++-+|+-+-+++|.-+
T Consensus 100 fsDGVPkEgl~~q~VL~RI 118 (145)
T PF06461_consen 100 FSDGVPKEGLRRQDVLVRI 118 (145)
T ss_pred cCCCCccCCCcHHHHHHHH
Confidence 8999999999999888755
No 69
>PF15219 TEX12: Testis-expressed 12
Probab=23.45 E-value=1.7e+02 Score=26.14 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012875 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369 (454)
Q Consensus 326 IRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~ 369 (454)
|-+||+.|..|-.-|-...+=+++|++|..-|+..+.+-.+.++
T Consensus 45 ls~yA~ilSEraavd~syi~eiD~lfkEA~~lEnfLkqkre~Lr 88 (100)
T PF15219_consen 45 LSTYAKILSERAAVDASYITEIDGLFKEANALENFLKQKRECLR 88 (100)
T ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999998887666554
No 70
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=23.44 E-value=3.3e+02 Score=27.93 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=17.6
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
..+-+|++.++-++|++-.-
T Consensus 76 ~GiN~Pi~~~~~viGvIgIt 95 (385)
T PRK11477 76 QGINLPLRLEGEIVGVIGLT 95 (385)
T ss_pred cCceeeEEECCEEEEEEecC
Confidence 46789999999999999866
No 71
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=21.75 E-value=6.2e+02 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.5
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.+-++|+++++-++|+|..+
T Consensus 105 ~~~~~PI~~~~~vIaVl~~~ 124 (145)
T PF12282_consen 105 RQEVVPIRRNGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 47899999999999999977
No 72
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.16 E-value=1.8e+02 Score=27.67 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHhhhcCCC
Q 012875 347 VEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAY 391 (454)
Q Consensus 347 ae~Iv~E~dRL~~ll~qL~~~v~p~~~~i~r~~ee~l~~~~~~~~ 391 (454)
+..++.|+|+|...-.+.-.-+.-...+|.+|.|+.+|..+...+
T Consensus 43 v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~ 87 (159)
T PF05384_consen 43 VSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAH 87 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH
Confidence 456778899998888777777777788999999999998776554
Done!