Query 012875
Match_columns 454
No_of_seqs 102 out of 107
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 98.7 5.5E-08 1.9E-12 87.7 9.9 74 299-372 11-86 (258)
2 4ew8_A Sensor protein DIVL; si 98.6 1.1E-07 3.6E-12 85.6 8.7 81 292-372 24-104 (268)
3 3zcc_A HAMP, osmolarity sensor 98.6 3.5E-07 1.2E-11 71.3 10.1 69 294-368 46-114 (114)
4 3d36_A Sporulation kinase B; G 98.4 1.7E-07 6E-12 82.3 3.9 72 303-374 9-80 (244)
5 3a0r_A Sensor protein; four he 98.2 4.1E-06 1.4E-10 77.5 9.1 65 306-370 130-194 (349)
6 4fpp_A Phosphotransferase; fou 98.2 4.3E-06 1.5E-10 76.9 8.2 53 311-364 49-101 (247)
7 3jz3_A Sensor protein QSEC; he 98.1 1.6E-07 5.4E-12 81.5 -1.6 66 307-372 1-66 (222)
8 3zrx_A AF1503 protein, osmolar 97.9 6.3E-05 2.2E-09 58.1 9.4 68 295-368 47-114 (115)
9 2btz_A Pyruvate dehydrogenase 97.1 0.00026 8.8E-09 69.4 3.8 58 310-370 97-165 (394)
10 2e0a_A Pyruvate dehydrogenase 97.1 0.00052 1.8E-08 67.3 5.7 56 310-368 97-163 (394)
11 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.0014 4.7E-08 64.0 7.6 68 305-373 118-186 (388)
12 2q8g_A [pyruvate dehydrogenase 96.7 0.0011 3.9E-08 65.2 4.3 58 311-371 108-176 (407)
13 1y8o_A [pyruvate dehydrogenase 96.3 0.003 1E-07 62.7 4.9 57 311-370 120-187 (419)
14 3ehh_A Sensor kinase (YOCF pro 95.4 0.029 9.8E-07 48.8 6.7 64 306-369 26-90 (218)
15 3mmh_A FRMSR, methionine-R-sul 94.7 0.29 1E-05 43.6 11.2 127 110-297 25-165 (167)
16 3e0y_A Conserved domain protei 94.3 0.36 1.2E-05 39.3 10.0 33 111-144 24-56 (181)
17 2zmf_A CAMP and CAMP-inhibited 93.6 0.65 2.2E-05 38.1 10.5 29 115-144 27-55 (189)
18 3trc_A Phosphoenolpyruvate-pro 93.6 1.1 3.7E-05 36.1 11.6 98 114-220 20-133 (171)
19 3p01_A Two-component response 93.5 1.2 4.2E-05 37.6 12.2 96 114-220 42-151 (184)
20 1vhm_A Protein YEBR; structura 93.1 0.91 3.1E-05 41.5 11.6 96 109-220 36-145 (195)
21 1b3q_A Protein (chemotaxis pro 92.9 0.073 2.5E-06 52.4 4.2 50 307-368 9-58 (379)
22 3rfb_A Putative uncharacterize 92.7 0.64 2.2E-05 42.1 9.8 96 110-220 26-134 (171)
23 3ksh_A Putative uncharacterize 92.7 1.5 5.3E-05 39.1 12.1 98 109-220 24-133 (160)
24 3ci6_A Phosphoenolpyruvate-pro 92.3 2.7 9.2E-05 33.2 12.0 98 114-220 22-135 (171)
25 2e4s_A CAMP and CAMP-inhibited 91.7 2.3 7.8E-05 35.0 11.3 28 116-144 28-55 (189)
26 3oov_A Methyl-accepting chemot 91.3 4.8 0.00016 32.2 14.0 98 114-220 14-133 (169)
27 3nhq_A Bacteriophytochrome; ph 90.8 6.8 0.00023 41.1 16.4 30 114-144 137-166 (505)
28 1f5m_A GAF; CGMP binding, sign 90.6 2 6.7E-05 38.2 10.5 35 110-144 35-73 (180)
29 3zq5_A Phytochrome-like protei 90.0 14 0.00049 38.9 18.0 91 202-339 272-365 (520)
30 2qyb_A Membrane protein, putat 89.9 7.3 0.00025 32.0 13.0 30 114-144 15-44 (181)
31 3hcy_A Putative two-component 89.6 1.1 3.8E-05 36.0 7.4 20 201-220 92-111 (151)
32 3o5y_A Sensor protein; GAF dom 89.2 1.5 5.2E-05 38.1 8.5 21 200-220 95-115 (165)
33 3ibj_A CGMP-dependent 3',5'-cy 89.2 1.9 6.4E-05 45.4 10.6 20 201-220 288-308 (691)
34 2w3g_A DOSS, two component sen 89.2 6.7 0.00023 30.6 12.6 30 114-144 4-33 (153)
35 1mc0_A 3',5'-cyclic nucleotide 88.6 13 0.00045 34.4 14.9 30 114-144 25-54 (368)
36 2lb5_A Sensor histidine kinase 88.4 9.9 0.00034 32.6 13.0 33 111-144 25-57 (208)
37 1mc0_A 3',5'-cyclic nucleotide 87.9 7.5 0.00026 36.0 12.7 29 115-144 195-223 (368)
38 4eho_A Bacteriophytochrome, PA 86.9 5.6 0.00019 41.9 12.5 30 114-144 144-173 (635)
39 4glq_A Methyl-accepting chemot 84.2 20 0.00068 31.1 15.1 33 111-144 6-38 (171)
40 2vjw_A GAF-B, GAF family prote 84.0 12 0.0004 31.5 11.0 20 201-220 86-105 (149)
41 3k2n_A Sigma-54-dependent tran 84.0 3.6 0.00012 33.6 7.5 31 113-144 17-47 (177)
42 1ykd_A Adenylate cyclase; GAF 76.3 35 0.0012 32.1 12.6 30 114-144 212-241 (398)
43 2ool_A Sensor protein; bacteri 71.4 53 0.0018 32.6 13.0 30 114-144 159-188 (337)
44 2k2n_A Sensor protein, SYB-CPH 68.4 6.7 0.00023 32.8 5.0 20 201-220 120-139 (172)
45 3ibj_A CGMP-dependent 3',5'-cy 68.1 73 0.0025 33.4 13.8 30 114-144 26-55 (691)
46 1ykd_A Adenylate cyclase; GAF 61.4 1.1E+02 0.0037 28.8 13.9 20 201-220 121-141 (398)
47 4e04_A Bacteriophytochrome (li 55.5 1.7E+02 0.0057 29.1 13.2 30 114-144 146-175 (327)
48 3s7o_A Bacteriophytochrome; bi 51.6 2E+02 0.0069 28.9 13.9 30 114-144 164-193 (343)
49 3cit_A Sensor histidine kinase 45.9 64 0.0022 29.2 7.7 85 115-220 30-118 (160)
50 3dba_A CONE CGMP-specific 3',5 45.2 27 0.00093 29.7 4.9 33 111-144 16-49 (180)
51 3kyj_A CHEA3, putative histidi 29.0 1.8E+02 0.0061 25.2 7.6 50 309-367 63-112 (144)
52 4eu0_A PELD; C-DI-GMP, signali 24.7 1.2E+02 0.0041 29.7 6.3 87 121-220 28-124 (298)
53 3zyl_A Phosphatidylinositol-bi 23.0 95 0.0033 29.8 5.1 42 326-367 131-188 (271)
54 3bjc_A CGMP-specific 3',5'-cyc 20.9 28 0.00097 37.9 1.1 20 201-220 453-474 (878)
55 1wmi_B RELB, hypothetical prot 20.4 1.2E+02 0.004 24.1 4.1 42 349-391 8-49 (67)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.70 E-value=5.5e-08 Score=87.72 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~p--de~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
..+++....+.+++++++|||||||++|++|+++|...+.. .+...++++.|..+++||.+++.+|.++.++..
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~ 86 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLER 86 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555556668899999999999999999999999887654 345678999999999999999999999887543
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=98.60 E-value=1.1e-07 Score=85.61 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 292 ~vLDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
..+.++...+++..+.+++++++++|+|||||++|+++.++|.+....++..++.++.|....+||.+++..+.++.+..
T Consensus 24 ~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~ 103 (268)
T 4ew8_A 24 SALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQID 103 (268)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777788999999999999999999999999998777778889999999999999999999999998754
Q ss_pred c
Q 012875 372 K 372 (454)
Q Consensus 372 ~ 372 (454)
.
T Consensus 104 ~ 104 (268)
T 4ew8_A 104 A 104 (268)
T ss_dssp T
T ss_pred c
Confidence 3
No 3
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.58 E-value=3.5e-07 Score=71.34 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012875 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 294 LDqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v 368 (454)
+.+=...+++...++++++++++||+||||++|++++.++.. ....+++.|..+.++|..++.++.+++
T Consensus 46 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~------~~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 46 IERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE------QDGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333345566666777889999999999999999999999853 356778999999999999999998763
No 4
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.37 E-value=1.7e-07 Score=82.35 Aligned_cols=72 Identities=8% Similarity=0.090 Sum_probs=58.1
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012875 303 QSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (454)
Q Consensus 303 qql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~~ 374 (454)
+.+..++++++.++|+|||||++|++++++|......++..+++++.|..+.+|+.+++..+.++.+.....
T Consensus 9 e~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~ 80 (244)
T 3d36_A 9 EKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPET 80 (244)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred HHHHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 345566899999999999999999999999998887777888999999999999999999999988765543
No 5
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.20 E-value=4.1e-06 Score=77.47 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=59.5
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012875 306 WQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370 (454)
Q Consensus 306 ~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p 370 (454)
...++++++++|+|||||++|++|.++|.+.....+...+..+.|..+.+||.+++.++.++.+.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 194 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 194 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34578999999999999999999999999988887888899999999999999999999998874
No 6
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.15 E-value=4.3e-06 Score=76.91 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012875 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQEL 364 (454)
Q Consensus 311 ~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL 364 (454)
+.++++|||||||++|++|..+|..... ++...+..+.|-++.+|++++++.+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~-~~~~~~~l~~I~~~~~~~~~ll~~~ 101 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSA-QDMRDDAMNLIASSARKLADLLQFT 101 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTC-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999876543 4455667888999999999988644
No 7
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=98.14 E-value=1.6e-07 Score=81.48 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=23.0
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (454)
Q Consensus 307 qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~ 372 (454)
|+++++++++|||||||++|+++.+++.......+...+..+.|..+.+|+.+++..|.++.+...
T Consensus 1 r~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~ 66 (222)
T 3jz3_A 1 RERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDS 66 (222)
T ss_dssp ---------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999999999999999999877766666677788899999999999999999988554
No 8
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.91 E-value=6.3e-05 Score=58.12 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012875 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 295 Dqr~~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v 368 (454)
..=...+++...++.+++.+++|++|+|++.|+++++.+... ..+.++.|....+++.+++..+.++.
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 47 ERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344555566678889999999999999999999988643 36788999999999999999998764
No 9
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.11 E-value=0.00026 Score=69.37 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhh-----hhhHHHHHHHHHhhhcCCCcccHH----HHH--HHHHHHHHHHHHHHHHHHHhhc
Q 012875 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMKRSEISYD----IVE--DIMVQGDRLRGTLQELQDAVFL 370 (454)
Q Consensus 310 ~~la~L~HQiRN-----PLTAIRTfAkLLlkRL~pde~~rd----lae--~Iv~E~dRL~~ll~qL~~~v~p 370 (454)
+++.+++||||| ||++|+|+..++...-. +....+ +.+ .|.++++|| ++.++.++.+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~-~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~ 165 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGD-DPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDG 165 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcc
Confidence 478899999999 99999999998765432 222222 444 488899999 99999998776
No 10
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.07 E-value=0.00052 Score=67.32 Aligned_cols=56 Identities=5% Similarity=0.043 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhh-----hhhHHHHHHHHHhhhcCCCccc----HHHHH--HHHHHHHHHHHHHHHHHHHh
Q 012875 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMKRSEIS----YDIVE--DIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 310 ~~la~L~HQiRN-----PLTAIRTfAkLLlkRL~pde~~----rdlae--~Iv~E~dRL~~ll~qL~~~v 368 (454)
+++.+++||||| ||++|+|+..++.. ...+... ....+ .|.++++|| ++.++.++.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~-~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~ 163 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDA-CTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIF 163 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTT-SCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh-hccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 478889999999 99999999995544 3322222 44555 688999999 999999843
No 11
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.97 E-value=0.0014 Score=63.97 Aligned_cols=68 Identities=7% Similarity=0.015 Sum_probs=55.7
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHH-HHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875 305 SWQNNARMSNLVEQIRGPLSSIQ-TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (454)
Q Consensus 305 l~qq~~~la~L~HQiRNPLTAIR-TfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~ 373 (454)
..+..+++.+++|++||||++|. ++..++ +....++...+..+.|.++.+||..++.++.++.+....
T Consensus 118 ~~~~~~~l~~i~helrtpL~~i~~g~~~l~-~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~ 186 (388)
T 1gkz_A 118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 186 (388)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHSS-SSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34557899999999999999999 666554 444446667889999999999999999999999886533
No 12
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.66 E-value=0.0011 Score=65.21 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=41.4
Q ss_pred HHHHHHHHHhh-----hhhHHHHHHHHHhhhcCCCc----ccHHHHHH--HHHHHHHHHHHHHHHHHHhhcc
Q 012875 311 RMSNLVEQIRG-----PLSSIQTLSKMLSLHMKRSE----ISYDIVED--IMVQGDRLRGTLQELQDAVFLT 371 (454)
Q Consensus 311 ~la~L~HQiRN-----PLTAIRTfAkLLlkRL~pde----~~rdlae~--Iv~E~dRL~~ll~qL~~~v~p~ 371 (454)
++.+++||||| ||++|+|+.+++.. ...+. .-..+.+. |.++++|| ++.++.++.+..
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~-~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e 176 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKES-FGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGK 176 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH-C--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHh-hccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccc
Confidence 56666699999 99999999996554 32222 22455565 77789999 999999988773
No 13
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.31 E-value=0.003 Score=62.65 Aligned_cols=57 Identities=5% Similarity=-0.046 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhhh-----HHHHHHHHHhhhcCCC----cccHHHHHHHHHH--HHHHHHHHHHHHHHhhc
Q 012875 311 RMSNLVEQIRGPLS-----SIQTLSKMLSLHMKRS----EISYDIVEDIMVQ--GDRLRGTLQELQDAVFL 370 (454)
Q Consensus 311 ~la~L~HQiRNPLT-----AIRTfAkLLlkRL~pd----e~~rdlae~Iv~E--~dRL~~ll~qL~~~v~p 370 (454)
++.+++|||||||+ +|+|+..++.. ...+ +.-....+.|+.+ +.|| ++.++......
T Consensus 120 ~f~~~~HeLrtPL~~vi~~~i~g~~ell~~-~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~ 187 (419)
T 1y8o_A 120 NFLQVLIKVRNRHNDVVPTMAQGVIEYKEK-FGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGG 187 (419)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSC
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcc
Confidence 46678899999999 88999996554 3222 2334455565555 8898 88888766544
No 14
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.44 E-value=0.029 Score=48.77 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=46.5
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012875 306 WQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE-ISYDIVEDIMVQGDRLRGTLQELQDAVF 369 (454)
Q Consensus 306 ~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde-~~rdlae~Iv~E~dRL~~ll~qL~~~v~ 369 (454)
..+.++...+.|+++|||++|+.+.+++...+..+. ...+..+.|....+++.+.+..+...++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~~ 90 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMK 90 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334778889999999999999999999988776543 3455666677766666666665554433
No 15
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=94.69 E-value=0.29 Score=43.56 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=75.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCccceeeeccc-----------c-c
Q 012875 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGN-----------F-N 177 (454)
Q Consensus 110 lm~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~~~~~il~g~-----------~-~ 177 (454)
++..+.|+......=++++.+.+ +..|+++|+... .++++.+.+-.-.|..- .+.+|. . .
T Consensus 25 ll~~~~dl~~~L~~v~~~l~~~l-~~~~~~iyL~d~---~~~~L~l~a~~G~~~~~----~i~~geGi~G~v~~~g~~~~ 96 (167)
T 3mmh_A 25 VVADETDWVANLANTAAVLKEAF-GWFWVGFYLVDT---RSDELVLAPFQGPLACT----RIPFGRGVCGQAWAKGGTVV 96 (167)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHH-CCSEEEEEEEET---TTTEEEEEEEESSCCCS----EEETTSHHHHHHHHHTSCEE
T ss_pred HHccCCCHHHHHHHHHHHHHHHc-CCcEEEEEEEEC---CCCEEEEEEecccccce----EeccCCChHHHHHhCCcEEE
Confidence 34455677777777788899999 799999999851 33555555533333211 111110 0 0
Q ss_pred CCcchhHHHH--HhhcccccccCCCCcEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 012875 178 MPAGLRAAEA--ALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (454)
Q Consensus 178 lP~~~~aaed--~L~~q~~~~lps~~a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~ 255 (454)
++.. ..+ .+. . ......-+++||++++-++|+|.+. +. .+.
T Consensus 97 v~Dv---~~~p~~~~-~---~~~~~S~i~vPi~~~g~viGVL~i~-----------s~-------------~~~------ 139 (167)
T 3mmh_A 97 VGDV---DAHPDHIA-C---SSLSRSEIVVPLFSDGRCIGVLDAD-----------SE-------------HLA------ 139 (167)
T ss_dssp ESCG---GGSTTCCC-S---STTCCEEEEEEEEETTEEEEEEEEE-----------ES-------------STT------
T ss_pred ECCc---ccCcchhh-c---CccCCeEEEEEeccCCEEEEEEEEe-----------cC-------------CCC------
Confidence 1111 111 110 0 0112345899999999999999999 21 010
Q ss_pred cccccccchhhhhhhhcccHHHhhHHHHHHHHHHHHHHHHHH
Q 012875 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297 (454)
Q Consensus 256 e~~qIQ~~~~e~~~~~~f~~dqRl~a~~IA~tLAmA~vLDqr 297 (454)
.|+++....+..+|..++.+..++-|
T Consensus 140 ----------------~F~~~d~~~L~~lA~~la~~i~~~~~ 165 (167)
T 3mmh_A 140 ----------------QFDETDALYLGELAKILEKRFEASRQ 165 (167)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 25667777778899888887776654
No 16
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=94.31 E-value=0.36 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 111 m~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+..+.++..+++.=++.+.+.+ +.++++||+..
T Consensus 24 l~~~~~~~~~l~~i~~~~~~~~-~~~~~~i~l~d 56 (181)
T 3e0y_A 24 VSSDFDLPEVLQHVTAKVATQL-KVSVCNIYLRE 56 (181)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHT-TCSCEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHh-CCCeEEEEEEc
Confidence 3445677888888889999999 99999999986
No 17
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=93.63 E-value=0.65 Score=38.10 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 115 ~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
.|+-++.+.=++.+.+.+ ++++++||+-.
T Consensus 27 ~dld~ll~~i~~~~~~~l-~ad~~~i~l~d 55 (189)
T 2zmf_A 27 VAIDSLLEHIMIYAKNLV-NADRCALFQVD 55 (189)
T ss_dssp SCHHHHHHHHHHHHHHHH-TEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEEEe
Confidence 355666666677788888 89999999975
No 18
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=93.59 E-value=1.1 Score=36.15 Aligned_cols=98 Identities=10% Similarity=0.130 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCc--cceeeecccc------------cCC
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLVGNF------------NMP 179 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~--~~~~il~g~~------------~lP 179 (454)
+.++..+++.=++.+.+.+ +.+.++||+.... ++ .|..++.+..... ....+..+.- .++
T Consensus 20 ~~~~~~~l~~~~~~~~~~~-~~~~~~i~l~d~~---~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T 3trc_A 20 APNLEQALKLVVVRLCEAL-PADACSLFICDDV---HG--EYVLMATQGLNSKQVGKLRLKFGEGLIGLVGEREEPINLA 93 (171)
T ss_dssp CSSHHHHHHHHHHHHHHHT-TCSEEEEEEEETT---TT--EEEEEEEESSCGGGTTTCEEETTCHHHHHHHHHTSCEEES
T ss_pred ccCHHHHHHHHHHHHHHHh-CCcEEEEEEEECC---CC--eEEEEEecCCCccccccEeecCCCChhhHHHhcCCeEEeC
Confidence 4467777787888889899 9999999998622 22 4555555443211 1111111100 011
Q ss_pred cchhHHHHH-hhccc-ccccCCCCcEEeecccCCeEEEEEEee
Q 012875 180 AGLRAAEAA-LSSQQ-VQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 180 ~~~~aaed~-L~~q~-~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
.. .++. ..... .....-..-+.+||+.++-++|+|.+.
T Consensus 94 d~---~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~ 133 (171)
T 3trc_A 94 DA---PLHPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQ 133 (171)
T ss_dssp CG---GGSTTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEE
T ss_pred CC---CCCCcccccccCCcccccEEEEEeEEECCEEEEEEEEe
Confidence 10 1110 00000 011222356789999999999999999
No 19
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=93.48 E-value=1.2 Score=37.56 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEee-eCCCCccceeee----c------ccc-cCCcc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVS-YPGVNATDIVVL----V------GNF-NMPAG 181 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~-YP~~~~~~~~il----~------g~~-~lP~~ 181 (454)
+.|...+.+.=++.+.+.+ ++++++||+-..+ ++..++. |+........+. + |.. .++..
T Consensus 42 ~~dl~~il~~i~~~l~~~l-~~d~~~i~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 113 (184)
T 3p01_A 42 SNSLEAILTPIATAFAESF-AVNACILQMLEGQ-------TLSTIQGFYSQQGTVNNWLNQDPLTNEAIATGQIQVAANI 113 (184)
T ss_dssp CSSSHHHHHHHHHHHHHHH-TCSEEEEEEEETT-------EEEEEEEEEESSSSCCCCGGGCHHHHHHHHHCSCEEESCG
T ss_pred cCCHHHHHHHHHHHHHHHh-CCCeEEEEEecCC-------ceeeeeeeccccCccCcccCCCcHHHHHHhhCCeEEEecc
Confidence 4455666777778888899 8999999998522 3445444 765432111000 0 000 01111
Q ss_pred hhHHHH-Hhhccc-ccccCCCCcEEeecccCCeEEEEEEee
Q 012875 182 LRAAEA-ALSSQQ-VQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 182 ~~aaed-~L~~q~-~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
.++ .+.... .....-..-+++||+.++-++|+|.+.
T Consensus 114 ---~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~ 151 (184)
T 3p01_A 114 ---AKDPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQ 151 (184)
T ss_dssp ---GGCHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEE
T ss_pred ---ccCccccchhHHHHhCccEEEEEEEEECCEEEEEEEeC
Confidence 111 000000 001122346899999999999999998
No 20
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=93.14 E-value=0.91 Score=41.48 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=57.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCccceeeeccc-----------c-
Q 012875 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGN-----------F- 176 (454)
Q Consensus 109 ~lm~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~~~~~il~g~-----------~- 176 (454)
.++..+.|+..++..=++++.+.+++..|.++|+... +.+.+.+..-++... .+.+|. .
T Consensus 36 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~-----~~L~l~~~~G~~~~~----~i~~GeGi~G~aa~tg~~i 106 (195)
T 1vhm_A 36 ALMAGETSFLATLANTSALLYERLTDINWAGFYLLED-----DTLVLGPFQGKIACV----RIPVGRGVCGTAVARNQVQ 106 (195)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET-----TEEEEEEEEESCCCS----EEETTSHHHHHHHHHTSCE
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-----CEEEEEEecCcccce----EecCCCChHHHHHhcCCEE
Confidence 4456667888888888899999997889999999862 445555444333211 011110 0
Q ss_pred cCCcchhHHHH--HhhcccccccCCCCcEEeecccCCeEEEEEEee
Q 012875 177 NMPAGLRAAEA--ALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 177 ~lP~~~~aaed--~L~~q~~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
.+|.. .++ .+. .......-+++||+.++-++|+|.++
T Consensus 107 ~V~Dv---~~~p~~~~----~~~~~~S~l~VPI~~~g~viGVL~i~ 145 (195)
T 1vhm_A 107 RIEDV---HVFDGHIA----CDAASNSEIVLPLVVKNQIIGVLDID 145 (195)
T ss_dssp EESCT---TTCTTCCC----SCCCCSEEEEEEEEETTEEEEEEEEE
T ss_pred EECCc---ccCcchhh----cCCCccEEEEEeEeECCEEEEEEEec
Confidence 01111 000 000 00112357899999999999999998
No 21
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=92.88 E-value=0.073 Score=52.37 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=42.5
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012875 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (454)
Q Consensus 307 qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v 368 (454)
.+-+++.+++||+|+|++.|+++++.+.. +.|....+||.+++.+|++.+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~ 58 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVV 58 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998876643 668888899999999998876
No 22
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=92.69 E-value=0.64 Score=42.12 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCc----cc---------eeeecccc
Q 012875 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA----TD---------IVVLVGNF 176 (454)
Q Consensus 110 lm~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~----~~---------~~il~g~~ 176 (454)
++....|+.+....=+.++.+.++...|+++|+... +++.|.+-.-.|..-. +. -.+.+.+.
T Consensus 26 ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~-----~~L~l~a~~G~~a~~ri~~GeGv~G~va~tg~~i~V~Dv 100 (171)
T 3rfb_A 26 LLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDG-----KELVLGPFQGGVSCIRIALGKGVCGEAAHFQETVIVGDV 100 (171)
T ss_dssp HHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS-----SEEEEEEEESSSCCCEEETTSHHHHHHHHTTSCEEESCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC-----CEEEEEeccCCccceEeeCCcCHHHHHHhhCCEEEECCc
Confidence 344456677777777778888885589999999862 4455555333332110 00 00111111
Q ss_pred cCCcchhHHHHHhhcccccccCCCCcEEeecccCCeEEEEEEee
Q 012875 177 NMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 177 ~lP~~~~aaed~L~~q~~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
.--+. .+. . ......-+++||++++-|+|+|.++
T Consensus 101 ~~~p~------~i~-~---~~~~~Sei~VPI~~~g~viGVL~i~ 134 (171)
T 3rfb_A 101 TTYLN------YIS-C---DSLAKSEIVVPMMKNGQLLGVLDLD 134 (171)
T ss_dssp TSCSS------CCC-S---CTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred ccCcc------ccc-c---CcccCceEEEEEEECCEEEEEEEEe
Confidence 10000 000 0 0112246899999999999999999
No 23
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=92.65 E-value=1.5 Score=39.10 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=56.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCccceeeeccc-----------c-
Q 012875 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGN-----------F- 176 (454)
Q Consensus 109 ~lm~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~~~~~il~g~-----------~- 176 (454)
.++....|+.+....=+.++...++...|+++|+... +++.|.+-.-.|.. +.+.+|. .
T Consensus 24 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~-----~~L~l~~~~G~~a~----~ri~~GeGv~G~aa~~~~~i 94 (160)
T 3ksh_A 24 SLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQ-----NELILGPFQGHPAC----VHIPIGKGVCGTAVSERRTQ 94 (160)
T ss_dssp HTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET-----TEEEEEEEEESCCC----SEEETTSHHHHHHHHHTSCE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC-----CEEEEEeccCCccc----EEeeCCCCHHHHHHhhCCEE
Confidence 4455567788888878889999995589999999862 34555544333321 1111110 0
Q ss_pred cCCcchhHHHHHhhcccccccCCCCcEEeecccCCeEEEEEEee
Q 012875 177 NMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 177 ~lP~~~~aaed~L~~q~~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
.+|....-+ ..+.. .-....-+++||++++-++|+|.++
T Consensus 95 ~V~Dv~~~p-~~i~~----~~~~~Sei~VPI~~~g~viGVL~i~ 133 (160)
T 3ksh_A 95 VVADVHQFK-GHIAC----DANSKSEIVVPIFKDDKIIGVLDID 133 (160)
T ss_dssp EESCGGGST-TCCGG----GTTCSEEEEEEEEETTEEEEEEEEE
T ss_pred EECCcccCc-ccccc----CcccCceEEEEEEECCEEEEEEEEe
Confidence 011110000 01000 0112356899999999999999999
No 24
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=92.34 E-value=2.7 Score=33.15 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCc--cceeeeccc------------ccCC
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLVGN------------FNMP 179 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~--~~~~il~g~------------~~lP 179 (454)
+.++.++++.=++.+.+.+ +...++||+.... .+ .|..++.+..... ....+..+. +.++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~---~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (171)
T 3ci6_A 22 SVSLHDSLDIMVNQVADAM-KVDVCSIYLLDER---NQ--RYLLMASKGLNPESVGHVSLQLSEGLVGLVGQREEIVNLE 95 (171)
T ss_dssp CSSHHHHHHHHHHHHHHHH-TCSEEEEEEEETT---TT--EEEEEEEESSCGGGTTTCEEETTSHHHHHHHHHTSCEEES
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCeEEEEEEeCC---CC--EEEEEeccCCCcccccceeeeccCCeehhhhccCceEEec
Confidence 4456677777778888888 8999999998621 12 4555555543211 111111100 0011
Q ss_pred cchhHHHH-Hhhcccc-cccCCCCcEEeecccCCeEEEEEEee
Q 012875 180 AGLRAAEA-ALSSQQV-QVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 180 ~~~~aaed-~L~~q~~-~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
.. ..+ ....... ....-..-+.+||+.++-++|+|...
T Consensus 96 d~---~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~ 135 (171)
T 3ci6_A 96 NA---SKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQ 135 (171)
T ss_dssp SG---GGSTTC---------CCCEEEEEEEEETTEEEEEEEEE
T ss_pred CC---CcCcchhccccccccccceEEEEeEEECCEEEEEEEEe
Confidence 00 000 0000000 11122356789999999999999999
No 25
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=91.68 E-value=2.3 Score=35.03 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 116 dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
|+..+++.=++.+.+.+ ++++++||+-.
T Consensus 28 d~~~~l~~i~~~~~~~~-~a~~~~i~l~d 55 (189)
T 2e4s_A 28 AIDSLLEHIMIYAKNLV-NADRCALFQVD 55 (189)
T ss_dssp CHHHHHHHHHHHHHHHH-TEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHh-CCCeEEEEEEE
Confidence 66777777778888888 99999999986
No 26
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=91.26 E-value=4.8 Score=32.19 Aligned_cols=98 Identities=10% Similarity=0.130 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCc--cceeeecc--cc------------c
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLVG--NF------------N 177 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~--~~~~il~g--~~------------~ 177 (454)
+.++.++++.=++.+.+.+ +.++++||+-..+ .-.|..++.+..... ....+.+. .- .
T Consensus 14 ~~~~~~~l~~~~~~~~~~~-~~~~~~i~l~d~~-----~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (169)
T 3oov_A 14 SIDVDEVLRLCAEGLHDVL-GYERVNILMADTA-----RTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVYM 87 (169)
T ss_dssp CCCHHHHHHHHHHHHHHTT-CCSEEEEEEECTT-----SSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCEE
T ss_pred hcCHHHHHHHHHHHHHHhh-CCceEEEEEEeCC-----CCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCEE
Confidence 3456677777778888888 9999999997521 235566666653221 11111110 00 0
Q ss_pred CCcchhHHHH--Hhhc----ccccccCCCCcEEeecccCCeEEEEEEee
Q 012875 178 MPAGLRAAEA--ALSS----QQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 178 lP~~~~aaed--~L~~----q~~~~lps~~a~VlPLv~~~~VVG~LVaE 220 (454)
++.. .++ .... .......-..-+.+||+.++-++|+|.+.
T Consensus 88 i~d~---~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~ 133 (169)
T 3oov_A 88 IDDV---SAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVD 133 (169)
T ss_dssp ESCG---GGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEE
T ss_pred eccc---cchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEE
Confidence 1100 000 0000 00111233457899999999999999999
No 27
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=90.83 E-value=6.8 Score=41.10 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
|.+...+|+.=++-+++.+ +.++++||==.
T Consensus 137 sl~l~~il~~~v~evr~ll-~~DRV~IYrF~ 166 (505)
T 3nhq_A 137 HNDTASLLSNVTDELRRMT-GYDRVMAYRFR 166 (505)
T ss_dssp CCCHHHHHHHHHHHHHHHH-CCSEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 3466777888888888889 99999999654
No 28
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=90.59 E-value=2 Score=38.19 Aligned_cols=35 Identities=11% Similarity=-0.067 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhc----CCCcEEEEEecc
Q 012875 110 LVLPSPDFQRLCVEQLHLFRRIV----DPDAVLSVYVRP 144 (454)
Q Consensus 110 lm~~S~dF~~LC~qQLeLf~~~l----~~~a~l~VYLr~ 144 (454)
++..+.++..+...=++++...+ .+..|.++|+..
T Consensus 35 ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d 73 (180)
T 1f5m_A 35 LSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQ 73 (180)
T ss_dssp HHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEe
Confidence 44555667777777777787777 577899999986
No 29
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=90.00 E-value=14 Score=38.87 Aligned_cols=91 Identities=8% Similarity=0.084 Sum_probs=55.1
Q ss_pred cEEeecccCCeEEEEEEeecchhhhhccCCCCCCcccccCCcccccCCCCCCcccccccccchhhhhhhhcccHHHhhHH
Q 012875 202 AVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNA 281 (454)
Q Consensus 202 a~VlPLv~~~~VVG~LVaE~p~~~~~~~~~r~sdg~~~~~~~~~a~~Wpp~~~~e~~qIQ~~~~e~~~~~~f~~dqRl~a 281 (454)
-+++|+++++-+-|+|+.. .. .++.|++ +.|..+
T Consensus 272 sLvvpI~~~~~LWGLl~~H-----------h~-----------~pR~w~~------------------------~er~~~ 305 (520)
T 3zq5_A 272 SLTISLIKDGHLWGLIACH-----------HQ-----------TPKVIPF------------------------ELRKAC 305 (520)
T ss_dssp EEEEEEEETTEEEEEEEEE-----------ES-----------SCCCCCH------------------------HHHHHH
T ss_pred EEEEeEEECCEEEEEEEEe-----------cC-----------CCcCCCH------------------------HHHHHH
Confidence 5899999999999999999 11 0156732 445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hhhhHHHHHHHHHhhhcCC
Q 012875 282 INICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIR---GPLSSIQTLSKMLSLHMKR 339 (454)
Q Consensus 282 ~~IA~tLAmA~vLDqr~~~Lqqql~qq~~~la~L~HQiR---NPLTAIRTfAkLLlkRL~p 339 (454)
..+|..+++|..-.++...++.+... ++....|+..++ ++..+|.+...-|+.=++-
T Consensus 306 e~la~~lsiai~q~e~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~a 365 (520)
T 3zq5_A 306 EFFGRVVFSNISAQEDTETFDYRVQL-AEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGS 365 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcC
Confidence 67888787777665554444433322 222333444443 5566666655555554433
No 30
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=89.88 E-value=7.3 Score=32.03 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+.+...+.+.=++.+.+.+ +.+..+||+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~-~~~~~~i~l~~ 44 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEF-KLDLAVIRLVD 44 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCSEEEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHh-CCcEEEEEEEC
Confidence 3455666666667777778 78888888874
No 31
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=89.59 E-value=1.1 Score=36.04 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=18.2
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.-+.+||+.++-++|+|.+.
T Consensus 92 s~~~vPl~~~~~~iGvl~~~ 111 (151)
T 3hcy_A 92 ALGFFPLVTEGRLIGKFMTY 111 (151)
T ss_dssp EEEEEEEESSSSEEEEEEEE
T ss_pred heEEeceEECCEEEEEEEEe
Confidence 35799999999999999998
No 32
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=89.23 E-value=1.5 Score=38.11 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.1
Q ss_pred CCcEEeecccCCeEEEEEEee
Q 012875 200 QRAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 200 ~~a~VlPLv~~~~VVG~LVaE 220 (454)
..-+++||+.++-++|+|..+
T Consensus 95 ~S~l~vPL~~~~~~iGvl~l~ 115 (165)
T 3o5y_A 95 KSILVIPIYSKNKRVGVLSIG 115 (165)
T ss_dssp CEEEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeCeeECCEEEEEEEEE
Confidence 356899999999999999999
No 33
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=89.20 E-value=1.9 Score=45.37 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.3
Q ss_pred CcEEeecccC-CeEEEEEEee
Q 012875 201 RAVVFPMVKH-PFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~-~~VVG~LVaE 220 (454)
.-+++||+.+ +-++|+|.+.
T Consensus 288 S~L~vPL~~~~g~viGVL~l~ 308 (691)
T 3ibj_A 288 NILCFPIKNENQEVIGVAELV 308 (691)
T ss_dssp CEEEEECCCSSSCCCEEEEEE
T ss_pred eEEEEeEECCCCCEEEEEEEE
Confidence 5689999999 8999999998
No 34
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=89.17 E-value=6.7 Score=30.64 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+.++.++++.=++.+.+.+ +...++||+..
T Consensus 4 ~~~~~~~l~~i~~~~~~~~-~~~~~~i~l~d 33 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLV-DARYGAMEVHD 33 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TEEEEEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHh-CCCEEEEEEEC
Confidence 4567777777778888888 99999999986
No 35
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=88.64 E-value=13 Score=34.36 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+.|+-.+++.=++.+.+.+ ++++++||+..
T Consensus 25 ~~dl~~~l~~i~~~~~~~~-~~~~~~i~l~d 54 (368)
T 1mc0_A 25 DLDATSLQLKVLQYLQQET-QATHCCLLLVS 54 (368)
T ss_dssp CSSHHHHHHHHHHHHHHHS-CEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHh-CCcEEEEEEEe
Confidence 4467777777778888889 89999999976
No 36
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=88.36 E-value=9.9 Score=32.58 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 111 m~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+..|.|+-++++.=++.+++.+ ++++++||+-.
T Consensus 25 i~~~~dl~~il~~~~~~l~~~l-~~dr~~i~~~d 57 (208)
T 2lb5_A 25 IRQSLELDQILRATVEEVRAFL-GTDRVKVYRFD 57 (208)
T ss_dssp ------CHHHHHHHHHHHHHHH-CCSEEEEEECC
T ss_pred HHHcCCHHHHHHHHHHHHHHHH-CCCEEEEEEEc
Confidence 4455677778888888899999 99999999975
No 37
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=87.88 E-value=7.5 Score=36.02 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 115 ~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
.++..+.+.=++.+.+.+ +.++++||+..
T Consensus 195 ~~~~~~l~~i~~~~~~~~-~~~~~~i~l~d 223 (368)
T 1mc0_A 195 DDVSVLLQEIITEARNLS-NAEICSVFLLD 223 (368)
T ss_dssp TCHHHHHHHHHHHHHHHH-TEEEEEEEEEC
T ss_pred cCHHHHHHHHHHHHHHHh-cccEEEEEEEe
Confidence 355555555567777788 89999999987
No 38
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=86.92 E-value=5.6 Score=41.94 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
|.+...+|+.=++-+++.+ +.++++||-=.
T Consensus 144 s~~l~~i~~~~v~evr~l~-~~DRv~iy~F~ 173 (635)
T 4eho_A 144 AGSLRALCDDTALLFQQCT-GYDRVMVYRFD 173 (635)
T ss_dssp CCSHHHHHHHHHHHHHHHS-CCSEEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHHh-CCCeEEEEEEC
Confidence 5678889999999999999 99999999754
No 39
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=84.19 E-value=20 Score=31.06 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 111 m~~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+.-|-|...+++.=++.+++.+ +.++++||.-.
T Consensus 6 Ir~sldl~~il~~~v~~v~~~l-~~DRv~Iy~f~ 38 (171)
T 4glq_A 6 LSELRDRQAIFETLVAKGRELL-ACDRVIVYAFD 38 (171)
T ss_dssp --CTTHHHHHHHHHHHHHHHHH-TCSEEEEEEEC
T ss_pred HhhcCCHHHHHHHHHHHHHHHH-CCCeEEEEEEe
Confidence 4456788888898899999999 99999999865
No 40
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=84.04 E-value=12 Score=31.52 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=18.4
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.-+.+||+.++-++|+|.+.
T Consensus 86 s~l~vPL~~~~~~~GvL~l~ 105 (149)
T 2vjw_A 86 PALVLPLRATDTVAGVLVAV 105 (149)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEccCCeEEEEEEEe
Confidence 46789999999999999999
No 41
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=83.95 E-value=3.6 Score=33.57 Aligned_cols=31 Identities=13% Similarity=-0.030 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 113 ~S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
.+.|...+++.=++.+.+.+ +.++++||+-.
T Consensus 17 ~~~d~~~~l~~i~~~~~~~~-~~~~~~i~l~d 47 (177)
T 3k2n_A 17 TIRDPQELFRTVTDKLRLLF-AFDSAVIITID 47 (177)
T ss_dssp TCCSHHHHHHHHHHHHTTTC-CCSEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhc-CCCeEEEEEEc
Confidence 34556667777778888888 99999999975
No 42
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=76.27 E-value=35 Score=32.11 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+.++..+.+.=++.+.+.+ ++++++||+..
T Consensus 212 ~~dl~~~l~~i~~~~~~~~-~~~~~~i~l~d 241 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELM-NADRSTLWLID 241 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHT-TEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHh-CcCeEEEEEEE
Confidence 4566677777777888888 89999999976
No 43
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=71.39 E-value=53 Score=32.56 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
|-++..+|+.=++-+++.+ +.++++||==.
T Consensus 159 sl~l~~il~~tv~evr~ll-~~DRV~IYrF~ 188 (337)
T 2ool_A 159 AADLPTACWIAASEVRRIT-GFDRIKVYQFA 188 (337)
T ss_dssp CCSHHHHHHHHHHHHHHHH-CCSEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHh-CCCeeEEEEEc
Confidence 4456777888888888889 99999999644
No 44
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=68.37 E-value=6.7 Score=32.79 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=18.2
Q ss_pred CcEEeecccCCeEEEEEEee
Q 012875 201 RAVVFPMVKHPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~~~VVG~LVaE 220 (454)
.-+.+||++++-++|+|.+.
T Consensus 120 s~l~vPi~~~~~l~G~l~~~ 139 (172)
T 2k2n_A 120 SSLVVPLMHHQELWGLLVSH 139 (172)
T ss_dssp EEEECCCSCSSCCCEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 35789999999999999999
No 45
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=68.06 E-value=73 Score=33.39 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+-|.-++++.=++.+.+.+ ++.+++||+..
T Consensus 26 ~ldl~~ll~~il~~l~~~l-~ad~~~i~L~d 55 (691)
T 3ibj_A 26 DLDASSLQLKVLQYLQQET-RASRCCLLLVS 55 (691)
T ss_dssp CSSHHHHHHHHHHHHHHHT-TBSCEEEEEEC
T ss_pred hccHHHHHHHHHHHHHHHh-CCCEEEEEEEE
Confidence 6677888888888999999 99999999976
No 46
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=61.39 E-value=1.1e+02 Score=28.77 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=17.6
Q ss_pred CcEEeeccc-CCeEEEEEEee
Q 012875 201 RAVVFPMVK-HPFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~-~~~VVG~LVaE 220 (454)
.-+++||+. ++-++|+|.+.
T Consensus 121 s~l~vPl~~~~g~~iGvl~l~ 141 (398)
T 1ykd_A 121 TMLALPLLSEQGRLVAVVQLL 141 (398)
T ss_dssp CEEEEEEECSSCCEEEEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEe
Confidence 568899995 79999999998
No 47
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=55.54 E-value=1.7e+02 Score=29.13 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
|.+...+|+.=++-+++.+ +.+|++||==.
T Consensus 146 sldl~~il~~av~evr~ll-g~DRVmIYrF~ 175 (327)
T 4e04_A 146 AETLESACAAAAQEVREIT-GFDRVMIYRFA 175 (327)
T ss_dssp CCSHHHHHHHHHHHHHHHH-CCSEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCeEEEEEEc
Confidence 3466778888888899999 99999999754
No 48
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=51.57 E-value=2e+02 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 114 S~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
|.+...+|+.=++-+++.+ +.+|++||==.
T Consensus 164 sldl~~ilq~tV~eVR~ll-g~DRVmIYrF~ 193 (343)
T 3s7o_A 164 APNLRALAEVATQTVRELT-GFDRVMLYKFA 193 (343)
T ss_dssp CCSHHHHHHHHHHHHHHHH-CCSEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHh-CCCeEEEEEEc
Confidence 5567778888888888889 99999999754
No 49
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=45.88 E-value=64 Score=29.23 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCccceeeecccccCCcchhHHHHHhhcccc
Q 012875 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQV 194 (454)
Q Consensus 115 ~dF~~LC~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~~~~~il~g~~~lP~~~~aaed~L~~q~~ 194 (454)
.+-+.+|. +...+.+ +.++.+||+..+ . -+|..++..-.... ++++.++++...... +.
T Consensus 30 ~~~l~~il---~~a~~~~-~~d~gsL~l~d~----~--~~l~~~aa~G~~~~------l~~lr~~~~~~~~gp-----r~ 88 (160)
T 3cit_A 30 EAMRKCVL---QRACAFV-AMDHGLLLEWGA----D--NGVQTTARHGSKER------LSTLETTADPLAIGP-----QW 88 (160)
T ss_dssp HHHHHHHH---HHHHHHT-TCSEEEEEECC--------CCCEEEEEESCHHH------HTTSCCCCCTTCCSC-----EE
T ss_pred HHHHHHHH---HHHHHHh-ccCeeEEEEEcC----C--CceeeeeccCchhh------hhhhhcccccccccc-----cc
Confidence 33444444 4555566 899999999762 1 34555555441100 111112222110100 00
Q ss_pred cccCC---CCcEEeec-ccCCeEEEEEEee
Q 012875 195 QVVPE---QRAVVFPM-VKHPFVVGFLVAE 220 (454)
Q Consensus 195 ~~lps---~~a~VlPL-v~~~~VVG~LVaE 220 (454)
...+. ..-+++|| .+++-++|+|.+-
T Consensus 89 ~~~tg~~t~svl~vPL~~~~g~~~Gvlql~ 118 (160)
T 3cit_A 89 LERPGTHLPCVLLLPLRGADEGSFGTLVLA 118 (160)
T ss_dssp EECTTSSSCEEEEEEEECSSSSEEEEEEEE
T ss_pred ccccCcccceeEEEeeecCCCcEEEEEEEe
Confidence 01111 13457899 5999999999998
No 50
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=45.16 E-value=27 Score=29.68 Aligned_cols=33 Identities=6% Similarity=0.262 Sum_probs=26.9
Q ss_pred CCCCH-HHHHHHHHHHHHHHhhcCCCcEEEEEecc
Q 012875 111 VLPSP-DFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (454)
Q Consensus 111 m~~S~-dF~~LC~qQLeLf~~~l~~~a~l~VYLr~ 144 (454)
+..+. |+.++++.=++.+.+.+ ++++++|||..
T Consensus 16 l~~~~~dl~~ll~~il~~~~~~~-~a~~~~i~L~d 49 (180)
T 3dba_A 16 IQDEAGSMEKIVHKTLQRLSQLL-AADRCSMFICR 49 (180)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHH-TEEEEEEEEEE
T ss_pred HHHhhhcHHHHHHHHHHHHHHHh-CcceEEEEEEe
Confidence 34455 78888888888888899 99999999976
No 51
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=28.96 E-value=1.8e+02 Score=25.21 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012875 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDA 367 (454)
Q Consensus 309 ~~~la~L~HQiRNPLTAIRTfAkLLlkRL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~ 367 (454)
-..+..++|++=+=|..+|. +.-..+.++++.|++-.|+|..++..+..-
T Consensus 63 ~~~i~~laH~lE~ll~~lr~---------g~~~~~~~l~dlll~~~D~l~~lv~~~~~~ 112 (144)
T 3kyj_A 63 LSVVESRAHLCEDLIGLVRD---------AGVPMDGEIVEILLFASDTLRAMLEETAAS 112 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------SCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44566777777766665542 333466789999999999999999999874
No 52
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=24.72 E-value=1.2e+02 Score=29.75 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccCCcccCCcceeEEEeeeCCCCcccee-eecccccCCcchhHHHH-Hhhccccc---
Q 012875 121 CVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIV-VLVGNFNMPAGLRAAEA-ALSSQQVQ--- 195 (454)
Q Consensus 121 C~qQLeLf~~~l~~~a~l~VYLr~Ags~~~gqleL~pVa~YP~~~~~~~~-il~g~~~lP~~~~aaed-~L~~q~~~--- 195 (454)
.+.=|++|++.. .....++|.-..+ ....+.|++.--+...-+.. .+++. +-+. .+.+.+..
T Consensus 28 a~~lL~llaq~~-~l~~Aaly~~~~~----~~~~~~p~A~iG~~~~l~~~DpLVr~--------alet~~l~~v~~~~~~ 94 (298)
T 4eu0_A 28 AETVLALLAQYG-SLRIAGLYRVRYD----RTPEPQPLATLGEMPALDADDLLVRT--------CLERGELVSVRQELLE 94 (298)
T ss_dssp HHHHHHHHHHHH-TCSEEEEEEBCTT----SCBCSSCSEEESSCCCCCSCCHHHHH--------HHHHTSCEECCC----
T ss_pred HHHHHHHHHHhc-CeeEEEEEEEECC----cccCCceeeecCCCCCCCCCCHHHHH--------HHHhCCceeechhhhh
Confidence 444467788777 8899999976422 22566677665442211000 00000 1111 11111110
Q ss_pred ----ccCCCCcEEeecc-cCCeEEEEEEee
Q 012875 196 ----VVPEQRAVVFPMV-KHPFVVGFLVAE 220 (454)
Q Consensus 196 ----~lps~~a~VlPLv-~~~~VVG~LVaE 220 (454)
.-.+..-++.||+ -++-++|+|++|
T Consensus 95 ~~~~~~~sryL~viPLld~~g~i~Gvl~V~ 124 (298)
T 4eu0_A 95 RGEQRAHSAAAVCVPLVDTDGRILALLAVE 124 (298)
T ss_dssp ---------CCEEEEEECTTSCEEEEEEEE
T ss_pred ccccccccceEEEEEeecCCCcEEEEEEEe
Confidence 1134678999999 899999999999
No 53
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=22.96 E-value=95 Score=29.83 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcC------CC-------ccc--HHH-HHHHHHHHHHHHHHHHHHHHH
Q 012875 326 IQTLSKMLSLHMK------RS-------EIS--YDI-VEDIMVQGDRLRGTLQELQDA 367 (454)
Q Consensus 326 IRTfAkLLlkRL~------pd-------e~~--rdl-ae~Iv~E~dRL~~ll~qL~~~ 367 (454)
||.|++||..|+. .| ... +++ ++.++.+.+.|+++|..|.+.
T Consensus 131 Ir~Ya~yL~eRl~~f~~~~~d~~~~k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~ 188 (271)
T 3zyl_A 131 IRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDF 188 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTSCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccCCCCCCccccCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999975 11 111 111 456888888888888888775
No 54
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=20.87 E-value=28 Score=37.92 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred CcEEeecccC--CeEEEEEEee
Q 012875 201 RAVVFPMVKH--PFVVGFLVAE 220 (454)
Q Consensus 201 ~a~VlPLv~~--~~VVG~LVaE 220 (454)
.-+++||+.+ +-++|+|...
T Consensus 453 S~L~vPL~~~~~g~viGVL~l~ 474 (878)
T 3bjc_A 453 SLLCTPIKNGKKNKVIGVCQLV 474 (878)
T ss_dssp ----------------------
T ss_pred eEEEEEEecCCCCcEEEEEEEE
Confidence 4678999998 8999999998
No 55
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=20.38 E-value=1.2e+02 Score=24.14 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHhhhcCCC
Q 012875 349 DIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAY 391 (454)
Q Consensus 349 ~Iv~E~dRL~~ll~qL~~~v~p~~~~i~r~~ee~l~~~~~~~~ 391 (454)
.++.|-+||+.=||.|.+.+.|...+ .+.+||.|.+|-+-.-
T Consensus 8 ~vl~ELeRlkveiQRLE~ml~p~~~~-e~v~eeEl~ei~~eAR 49 (67)
T 1wmi_B 8 DVLKELERLKVEIQRLEAMLMPEERD-EDITEEEIAELLELAR 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCBCCC-TTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCC-CCCCHHHHHHHHHHHh
Confidence 48999999999999999998765432 4479999998876544
Done!