BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012876
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 159/252 (63%), Gaps = 18/252 (7%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYADSF---------------INLKGFMIG 200
TA+DSYAFL WF+RFP++K DFYIAGESYA + INLKGFM+G
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 187
Query: 201 NAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGFVEAYA 258
N +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 188 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAEQG 246
Query: 259 EIDIYSIYSPVC 270
ID+YS+Y+PVC
Sbjct: 247 NIDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 159/252 (63%), Gaps = 18/252 (7%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 4 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYADSF---------------INLKGFMIG 200
TA+DSYAFL WF+RFP++K DFYIAGESYA + INLKGFM+G
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 183
Query: 201 NAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGFVEAYA 258
N +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 184 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAEQG 242
Query: 259 EIDIYSIYSPVC 270
ID+YS+Y+PVC
Sbjct: 243 NIDMYSLYTPVC 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 159/252 (63%), Gaps = 18/252 (7%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 3 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYADSF---------------INLKGFMIG 200
TA+DSYAFL WF+RFP++K DFYIAGESYA + INLKGFM+G
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 182
Query: 201 NAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGFVEAYA 258
N +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 183 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAEQG 241
Query: 259 EIDIYSIYSPVC 270
ID+YS+Y+PVC
Sbjct: 242 NIDMYSLYTPVC 253
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 159/252 (63%), Gaps = 18/252 (7%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYADSF---------------INLKGFMIG 200
TA+DSYAFL WF+RFP++K DFYIAGESYA + INLKGFM+G
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVG 187
Query: 201 NAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGFVEAYA 258
N +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 188 NGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVATAEQG 246
Query: 259 EIDIYSIYSPVC 270
ID+YS+Y+PVC
Sbjct: 247 NIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 147/260 (56%), Gaps = 21/260 (8%)
Query: 30 QTTEADADRVRDLPGQPK-VEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKP-LVLWL 87
Q + + DR+ LPGQP V F Y GYV + N+ +AL+YWF EA + LVLWL
Sbjct: 1 QLQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWL 60
Query: 88 NGGPGCSSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSE 147
NGGPGCSSI GA QELG F V NG L N+Y+WNKAAN+LF E+P GVGFSY+N S
Sbjct: 61 NGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 148 DLHKLGDQVTANDSYAFLIGWFKRFPNFKSHDFYIAGES---------------YADSFI 192
DL +GD A D+Y FL+ WF+RFP++ +FYIAGES FI
Sbjct: 121 DL-SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGESGHFIPQLSQVVYRNRNNSPFI 179
Query: 193 NLKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIR--SNCNDHI 250
N +G ++ + + ND D G+ + W H +ISD+ K C G S + C +
Sbjct: 180 NFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCP-GTSFMHPTPECTEVW 238
Query: 251 RGFVEAYAEIDIYSIYSPVC 270
+ I+ Y+IY+P C
Sbjct: 239 NKALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 71/464 (15%)
Query: 35 DADRVRDLPGQPKV-EFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGC 93
D D ++ LPG K F+ Y+GY+K + H L YWF E+QK + P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLKSSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 94 SSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLG 153
SS+ G E GPFLV +G L++N YSWN AN+L+LE+P GVGFSY++ + +
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 117
Query: 154 DQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYA-------------DSFINLKGFMIG 200
D A ++ L +F+ FP +K++ ++ GESYA D +NL+G +G
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVG 177
Query: 201 NAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSNCNDHIRGFVEAYAE- 259
N + + + LV +A+ H ++ ++L+ + C ++ CN + +E
Sbjct: 178 NGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC-----CSQNKCNFYDNKDLECVTNL 232
Query: 260 -----------IDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDL------------WH 296
++IY++Y+P G P + DL WH
Sbjct: 233 QEVARIVGNSGLNIYNLYAPCA-----GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWH 287
Query: 297 R--LPSGYD-----PCAEDYVMK-FFNREDVQRALHANITKLSYPYTTCSGVIS-KWNDS 347
+ L SG PC + N V++AL NI + + C+ +++ ++
Sbjct: 288 QALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRL 345
Query: 348 AETVLPIIQKLLNA-GLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKH--- 403
++ KLL++ +I +Y+GD D + ++ + K++ + R W K+
Sbjct: 346 YRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDS 405
Query: 404 --QVAGWVETYEKGLTLVTVRGAGHQVPAFAPAQSLSLFTKFLS 445
Q+AG+V+ + + +T++GAGH VP P + ++F++FL+
Sbjct: 406 GEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLN 448
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 302 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 359
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 360 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 419
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 120
Query: 420 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 450
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 302 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 359
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 360 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 419
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 120
Query: 420 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 450
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 302 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 359
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 360 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 419
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 122
Query: 420 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 450
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 123 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 302 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 359
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 360 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 419
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 120
Query: 420 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 450
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 150/294 (51%), Gaps = 44/294 (14%)
Query: 35 DADRVRDLPGQPKV-EFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGC 93
D D ++ LPG K F+ Y+GY+K + H L YWF E+QK + P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLKGSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 94 SSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLG 153
SS+ G E GPFLV +G L++N YSWN AN+L+LE+P GVGFSY++ + +
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 119
Query: 154 DQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYA-------------DSFINLKGFMIG 200
D A ++ L +F+ FP +K++ ++ GESYA D +NL+G +G
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVG 179
Query: 201 NAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSNCNDHIRGFVEAYAE- 259
N + + + LV +A+ H ++ ++L+ + C ++ CN + +E
Sbjct: 180 NGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC-----CSQNKCNFYDNKDLECVTNL 234
Query: 260 -----------IDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDL---WHRLP 299
++IY++Y+P G P + DL + RLP
Sbjct: 235 QEVARIVGNSGLNIYNLYAPCA-----GGVPSHFRYEKDTVVVQDLGNIFTRLP 283
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 100/155 (64%), Gaps = 6/155 (3%)
Query: 302 YDPCAEDYVMKFFNREDVQRALHANITKL-SYPYTTCSGVI-SKWNDSAETVLPIIQKLL 359
YDPCA + + N +VQ ALHAN++ + YP+T CS I +W +A+ +LP+ ++L+
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 360 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFH---KHQVAGWVETYEKGL 416
AGLR+WVYSGDTD VPV+STR S+ + L +K W W+ + +V GW YE GL
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYE-GL 122
Query: 417 TLVTVRGAGHQVPAFAPAQSLSLFTKFLSAATLPS 451
T VTVRGAGH VP PAQ+ LF +FL +P+
Sbjct: 123 TYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 196/429 (45%), Gaps = 65/429 (15%)
Query: 52 HYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSSIAYGAAQELGPFLVGG 111
Y GY+ + D K F+W FE++ + P++LWLNGGPGCSS+ G ELGP +G
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 112 NGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQVTA-NDSYAFLIGWFK 170
+ + N YSWN A ++FL+ PV VGFSY+ +S + + V A D Y FL +F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFD 128
Query: 171 RFPNF--KSHDFYIAGESYADSFI---------------NLKGFMIGNAVINDPTDTKGL 213
+FP + K DF+IAGESYA +I NL +IGN + T L
Sbjct: 129 QFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGL------TDPL 182
Query: 214 VDYAWSHAIISDKLYKDI---SKECDFGQSMIRSNCNDHIRGFVEAYAEIDIYSIYSPVC 270
Y + + + + S+EC + + + G +E+ D S++S V
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSL-----ERCLGLIESC--YDSQSVWSCVP 235
Query: 271 LDSLDGKAPPKLMVAPHLLTQHDLW--HRLPSGYDPCAEDY--VMKFFNREDVQRALHAN 326
A +AP+ T +++ + G + C + + N++ V+ A+ A
Sbjct: 236 ATIYCNNA----QLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAE 291
Query: 327 ITKLSYPYTTCSGVISK----WNDSAETVLPIIQKLLNAGLRIWVYSGDTDGRVPVTSTR 382
+ Y +C+ I++ D + + LLN L I VY+GD D +
Sbjct: 292 VDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNK 347
Query: 383 YSINKMGLKIKEEW-----RAWFHK--HQVAGWVETYEKGLTLVTVRGAGHQVPAFAPAQ 435
+ + K EE+ R W +VAG V++Y K T + V GH VP P
Sbjct: 348 AWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFNGGHMVPFDVPEN 406
Query: 436 SLSLFTKFL 444
+LS+ +++
Sbjct: 407 ALSMVNEWI 415
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 194/429 (45%), Gaps = 65/429 (15%)
Query: 52 HYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSSIAYGAAQELGPFLVGG 111
Y GY+ + D K F+W FE++ + P++LWLNGGPGCSS+ G LGP +G
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 112 NGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQVTA-NDSYAFLIGWFK 170
+ + N YSWN A ++FL+ PV VGFSY+ +S + + V A D Y FL +F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFD 128
Query: 171 RFPNF--KSHDFYIAGESYADSFI---------------NLKGFMIGNAVINDPTDTKGL 213
+FP + K DF+IAG SYA +I NL +IGN + T L
Sbjct: 129 QFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGNGL------TDPL 182
Query: 214 VDYAWSHAIISDKLYKDI---SKECDFGQSMIRSNCNDHIRGFVEAYAEIDIYSIYSPVC 270
Y + + + + S+EC + + + G +E+ D S++S V
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSL-----ERCLGLIESC--YDSQSVWSCVP 235
Query: 271 LDSLDGKAPPKLMVAPHLLTQHDLW--HRLPSGYDPCAEDY--VMKFFNREDVQRALHAN 326
A +AP+ T +++ + G + C + + N++ V+ A+ A
Sbjct: 236 ATIYCNNA----QLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAE 291
Query: 327 ITKLSYPYTTCSGVISK----WNDSAETVLPIIQKLLNAGLRIWVYSGDTDGRVPVTSTR 382
+ Y +C+ I++ D + + LLN L I VY+GD D +
Sbjct: 292 VDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNK 347
Query: 383 YSINKMGLKIKEEW-----RAWFHK--HQVAGWVETYEKGLTLVTVRGAGHQVPAFAPAQ 435
+ + K EE+ R W +VAG V++Y K T + V GH VP P
Sbjct: 348 AWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFNGGHMVPFDVPEN 406
Query: 436 SLSLFTKFL 444
+LS+ +++
Sbjct: 407 ALSMVNEWI 415
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 186/435 (42%), Gaps = 71/435 (16%)
Query: 53 YAGYVKLRPNDHKA-------LFYWFF--EAQKGVSSKPLVLWLNGGPGCSSIAYGAAQE 103
+AG++ LR D F+W F G +PL++WLNGGPGCSS+ GA E
Sbjct: 30 HAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVE 88
Query: 104 LGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSE----DLHKLGDQVTAN 159
GPF V +G +L N+ SW ++LF++ P G GFS N + D +K + +
Sbjct: 89 SGPFRVNSDG-KLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDV 147
Query: 160 DSY--AFLIGWFKRFPNFKSHDFYIAGESYADSFI---------------------NLKG 196
+ FL +FK FP + ++GESYA +I +LK
Sbjct: 148 TKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKA 207
Query: 197 FMIGNAVINDPTDTKGLVDYAWSHAII--SDKLYKDISKECDFGQSMIRSNCNDHIRGFV 254
+IGN I+ T + + +A +I S+ +K ++ + Q++I S D F
Sbjct: 208 LLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFS 267
Query: 255 EAYAEIDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDLWHRLPSGYDPCAED------ 308
E + + S S G A L ++ L Y C +
Sbjct: 268 YQECENILNLLLSYTRESSQKGTA--------DCLNMYNF--NLKDSYPSCGMNWPKDIS 317
Query: 309 YVMKFFNREDVQRALHANITKLSYPYTTCSGVISKW-NDSAETVLPIIQKLLNAGLRIWV 367
+V KFF+ V +LH + K+ + + V +K N ++ + ++ LL +G+ I +
Sbjct: 318 FVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVL 377
Query: 368 YSGDTDGRVPVTSTRYSINKM------GLKIKEEWRAWFHK-------HQVAGWVETYEK 414
++GD D +I+ + G W HK + +G+V+ Y++
Sbjct: 378 FNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVK-YDR 436
Query: 415 GLTLVTVRGAGHQVP 429
LT V+V A H VP
Sbjct: 437 NLTFVSVYNASHMVP 451
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 364 RIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKH-----QVAGWVETYEKGLTL 418
+I +Y+GD D + ++ + K++ + R W K+ Q+AG+V+ + +
Sbjct: 65 QILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH-IAF 123
Query: 419 VTVRGAGHQVPAFAPAQSLSLFTKFLS 445
+T++GAGH VP P + ++F++FL+
Sbjct: 124 LTIKGAGHMVPTDKPLAAFTMFSRFLN 150
>pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani
Topoisomerase I-Vanadate-Dna Complex
Length = 432
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 174 NFKSHDFYIAGESYADSFINLKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISK 233
+FKS+D ++A + A FI+ +GN D DT G H +L D
Sbjct: 266 DFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHI----QLMPDNIV 321
Query: 234 ECDF-GQSMIRSNCNDHIRGFVEAYAEIDIYSIYSPVCLDSLDGKAPPKL 282
DF G+ IR ND + E YA + ++ +D D P +L
Sbjct: 322 RFDFLGKDSIRYQ-ND-VAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQL 369
>pdb|2HWK|A Chain A, Crystal Structure Of Venezuelan Equine Encephalitis
Alphavirus Nsp2 Protease Domain
Length = 320
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 80 SKPLVLWLNGGPGCSSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAA----NMLFLEAP 135
+K L LN G C SI YG A ++G + KF++ K++ +LF
Sbjct: 237 TKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLF---- 292
Query: 136 VGVGFSYTNNSEDLHKLGDQVT 157
V +G+ + + +KL +T
Sbjct: 293 VFIGYDRKARTHNPYKLSSTLT 314
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
Length = 410
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 142 YTNNSEDLHKLGDQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYADSFINLKGFMIGN 201
Y+ +S ++ LG DS + +R + D + G A+ F KGF +G
Sbjct: 186 YSKDSPKIYVLGG-AKVEDSLKVVENVLRR----ERADLVLTGGLVANVFTLAKGFDLGR 240
Query: 202 AVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQ----SMIRSNCNDHIRGFVEAY 257
+ + KGL+DY I D+ Y I DF + + RG + Y
Sbjct: 241 KNV-EFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQY 299
Query: 258 AEIDI 262
+DI
Sbjct: 300 QIMDI 304
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 161 SYAFLIGWFKRFPNFKSHDFYIAGESYADSFINLKGFM--IGN 201
Y F+ W N + D + GE++ + +LKGF+ +GN
Sbjct: 356 DYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGN 398
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 363 LRIWVYSGDTDGRVPVTSTRYSINKMG-----LKIKEEWRAWFHKH---QVAGWVETYE 413
+ IWV+ + D VPV ++R + K+ ++ E + + KH W+ TYE
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYE 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,519,744
Number of Sequences: 62578
Number of extensions: 646036
Number of successful extensions: 1560
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 25
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)