Query 012877
Match_columns 454
No_of_seqs 412 out of 2777
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0343 RNA Helicase [RNA proc 100.0 8.1E-83 1.8E-87 659.3 30.2 429 1-450 293-757 (758)
2 KOG0345 ATP-dependent RNA heli 100.0 1.5E-45 3.2E-50 377.3 18.0 221 1-223 235-457 (567)
3 KOG0342 ATP-dependent RNA heli 100.0 7E-45 1.5E-49 374.2 19.1 220 1-225 309-530 (543)
4 KOG0348 ATP-dependent RNA heli 100.0 2.3E-39 5E-44 335.6 18.3 218 1-219 401-664 (708)
5 KOG0330 ATP-dependent RNA heli 100.0 8.3E-31 1.8E-35 264.3 14.2 157 1-160 280-438 (476)
6 COG0513 SrmB Superfamily II DN 100.0 5.7E-29 1.2E-33 266.7 14.8 137 2-141 253-392 (513)
7 KOG0331 ATP-dependent RNA heli 100.0 1.1E-28 2.4E-33 260.3 15.0 134 2-138 319-456 (519)
8 KOG0340 ATP-dependent RNA heli 100.0 2.3E-28 5E-33 244.4 14.0 149 1-152 231-384 (442)
9 KOG0328 Predicted ATP-dependen 100.0 2.1E-28 4.5E-33 238.8 13.2 145 4-151 248-395 (400)
10 KOG0333 U5 snRNP-like RNA heli 99.9 8.5E-28 1.8E-32 249.5 14.3 134 3-139 499-633 (673)
11 PRK04837 ATP-dependent RNA hel 99.9 7.7E-27 1.7E-31 243.8 14.4 140 4-146 238-379 (423)
12 KOG0338 ATP-dependent RNA heli 99.9 1.5E-26 3.2E-31 239.6 13.3 165 7-174 412-588 (691)
13 PRK11634 ATP-dependent RNA hel 99.9 2.8E-25 6.1E-30 243.2 21.2 147 3-152 227-375 (629)
14 KOG0347 RNA helicase [RNA proc 99.9 5E-27 1.1E-31 244.8 6.4 137 1-141 444-581 (731)
15 PRK11776 ATP-dependent RNA hel 99.9 1.3E-25 2.7E-30 237.1 16.5 143 3-148 224-368 (460)
16 PRK10590 ATP-dependent RNA hel 99.9 3.3E-25 7.2E-30 234.2 16.1 140 3-145 227-368 (456)
17 PRK04537 ATP-dependent RNA hel 99.9 4.6E-25 1E-29 239.4 16.4 136 3-141 239-375 (572)
18 PRK11192 ATP-dependent RNA hel 99.9 8.6E-25 1.9E-29 228.9 16.3 134 5-141 229-363 (434)
19 KOG0326 ATP-dependent RNA heli 99.9 2.5E-25 5.3E-30 220.3 11.2 146 2-150 303-450 (459)
20 PTZ00110 helicase; Provisional 99.9 8.3E-25 1.8E-29 236.2 16.2 135 3-140 357-494 (545)
21 KOG0332 ATP-dependent RNA heli 99.9 1.7E-24 3.6E-29 217.9 13.8 146 2-150 310-465 (477)
22 PRK01297 ATP-dependent RNA hel 99.9 3.8E-24 8.2E-29 227.0 16.8 140 3-145 317-458 (475)
23 PLN00206 DEAD-box ATP-dependen 99.9 3.2E-24 6.9E-29 230.3 15.6 135 3-139 347-484 (518)
24 TIGR00614 recQ_fam ATP-depende 99.9 3.1E-23 6.7E-28 220.0 18.5 132 7-141 211-344 (470)
25 PTZ00424 helicase 45; Provisio 99.9 1.7E-23 3.7E-28 215.8 15.3 141 6-149 252-394 (401)
26 KOG0336 ATP-dependent RNA heli 99.9 6.7E-24 1.4E-28 215.4 11.1 135 2-139 445-581 (629)
27 PRK11057 ATP-dependent DNA hel 99.9 3.5E-23 7.5E-28 226.2 17.6 133 6-141 221-354 (607)
28 KOG0335 ATP-dependent RNA heli 99.9 1.7E-23 3.6E-28 218.5 12.7 133 3-138 310-452 (482)
29 PLN03137 ATP-dependent DNA hel 99.9 1.1E-22 2.4E-27 229.8 16.0 130 9-141 667-798 (1195)
30 KOG0350 DEAD-box ATP-dependent 99.9 9.8E-23 2.1E-27 211.1 13.6 140 1-141 409-552 (620)
31 TIGR01389 recQ ATP-dependent D 99.9 3.1E-22 6.8E-27 217.9 16.7 137 4-143 207-344 (591)
32 TIGR03817 DECH_helic helicase/ 99.9 2.4E-22 5.2E-27 223.9 15.6 160 7-169 259-428 (742)
33 KOG0344 ATP-dependent RNA heli 99.9 3.4E-22 7.4E-27 210.6 14.2 134 4-139 370-504 (593)
34 KOG0346 RNA helicase [RNA proc 99.9 5.1E-22 1.1E-26 203.3 14.5 135 1-138 247-418 (569)
35 KOG0341 DEAD-box protein abstr 99.9 3E-22 6.5E-27 202.4 11.1 131 4-138 405-537 (610)
36 KOG0327 Translation initiation 99.9 7.3E-22 1.6E-26 199.7 11.9 143 4-151 248-392 (397)
37 PRK04914 ATP-dependent helicas 99.9 5.5E-21 1.2E-25 216.2 19.3 160 6-167 478-645 (956)
38 KOG0334 RNA helicase [RNA proc 99.8 1.1E-20 2.3E-25 209.6 12.9 136 2-140 592-730 (997)
39 PRK12898 secA preprotein trans 99.8 1.9E-20 4.2E-25 204.1 14.4 128 2-134 452-590 (656)
40 COG0514 RecQ Superfamily II DN 99.8 6.4E-20 1.4E-24 197.1 16.9 124 18-144 227-351 (590)
41 PRK09200 preprotein translocas 99.8 7.3E-20 1.6E-24 203.2 14.3 128 2-132 407-543 (790)
42 PRK13767 ATP-dependent helicas 99.8 3.9E-19 8.4E-24 201.6 18.8 154 11-169 276-440 (876)
43 KOG0337 ATP-dependent RNA heli 99.8 4.7E-20 1E-24 188.2 9.3 207 3-217 242-469 (529)
44 KOG4284 DEAD box protein [Tran 99.8 1.1E-19 2.4E-24 192.8 10.9 124 6-132 257-381 (980)
45 cd00079 HELICc Helicase superf 99.8 1.2E-18 2.5E-23 150.3 12.8 117 7-126 12-131 (131)
46 PRK10917 ATP-dependent DNA hel 99.8 1.1E-18 2.4E-23 193.3 15.6 177 9-187 457-660 (681)
47 KOG0339 ATP-dependent RNA heli 99.8 5.4E-19 1.2E-23 183.7 11.7 134 2-138 447-583 (731)
48 TIGR00631 uvrb excinuclease AB 99.8 2.3E-18 4.9E-23 189.5 15.7 134 4-141 423-564 (655)
49 TIGR00580 mfd transcription-re 99.8 1.4E-18 3.1E-23 197.0 14.4 110 20-130 659-770 (926)
50 TIGR03714 secA2 accessory Sec 99.8 1.6E-18 3.4E-23 191.4 13.9 127 2-133 403-540 (762)
51 PRK09751 putative ATP-dependen 99.8 5.3E-18 1.2E-22 198.0 18.4 147 21-169 244-427 (1490)
52 TIGR01587 cas3_core CRISPR-ass 99.8 2.7E-18 5.9E-23 174.9 14.1 118 7-128 207-334 (358)
53 TIGR00643 recG ATP-dependent D 99.8 8.4E-18 1.8E-22 184.7 16.5 117 10-127 435-563 (630)
54 PHA02653 RNA helicase NPH-II; 99.7 7.7E-18 1.7E-22 185.4 14.2 108 21-132 395-516 (675)
55 PRK05298 excinuclease ABC subu 99.7 1.3E-17 2.7E-22 183.9 15.6 127 5-135 428-562 (652)
56 PRK10689 transcription-repair 99.7 9.4E-18 2E-22 193.9 14.8 108 21-129 809-918 (1147)
57 COG1111 MPH1 ERCC4-like helica 99.7 1.8E-17 4E-22 173.0 14.7 124 6-132 347-483 (542)
58 PRK13766 Hef nuclease; Provisi 99.7 1.7E-17 3.7E-22 185.8 15.5 123 4-130 344-479 (773)
59 PF00271 Helicase_C: Helicase 99.7 1.1E-17 2.5E-22 134.1 8.9 76 40-118 2-78 (78)
60 TIGR00963 secA preprotein tran 99.7 2.9E-17 6.3E-22 180.7 15.1 126 4-134 386-521 (745)
61 TIGR01970 DEAH_box_HrpB ATP-de 99.7 2.3E-17 4.9E-22 185.3 13.0 119 11-132 200-338 (819)
62 PRK12906 secA preprotein trans 99.7 4.8E-17 1E-21 180.2 12.9 126 4-132 421-555 (796)
63 TIGR02621 cas3_GSU0051 CRISPR- 99.7 6.1E-17 1.3E-21 180.5 13.2 116 6-129 254-390 (844)
64 PRK12900 secA preprotein trans 99.7 6.5E-17 1.4E-21 180.8 12.8 125 4-133 579-714 (1025)
65 PRK11664 ATP-dependent RNA hel 99.7 5.1E-17 1.1E-21 182.6 11.9 119 11-132 203-341 (812)
66 PRK02362 ski2-like helicase; P 99.7 6.4E-16 1.4E-20 172.7 17.5 120 9-131 233-398 (737)
67 KOG0349 Putative DEAD-box RNA 99.7 8.4E-17 1.8E-21 164.9 9.4 129 14-143 498-629 (725)
68 TIGR00603 rad25 DNA repair hel 99.7 4.6E-16 1E-20 171.7 14.2 120 5-132 478-609 (732)
69 COG1201 Lhr Lhr-like helicases 99.7 1.8E-15 3.8E-20 168.2 18.3 158 8-170 242-405 (814)
70 PHA02558 uvsW UvsW helicase; P 99.6 9E-16 2E-20 164.5 13.4 119 6-127 327-449 (501)
71 KOG0351 ATP-dependent DNA heli 99.6 1.2E-15 2.7E-20 172.1 12.9 128 12-142 475-604 (941)
72 KOG0354 DEAD-box like helicase 99.6 3.3E-15 7.1E-20 163.3 14.2 124 6-132 394-531 (746)
73 TIGR03158 cas3_cyano CRISPR-as 99.6 1.7E-15 3.7E-20 155.9 10.9 88 19-115 270-357 (357)
74 smart00490 HELICc helicase sup 99.6 2.6E-15 5.7E-20 119.0 8.6 80 36-118 2-82 (82)
75 PRK11131 ATP-dependent RNA hel 99.6 3.3E-15 7.1E-20 172.6 11.9 111 19-132 284-413 (1294)
76 PRK00254 ski2-like helicase; P 99.6 7E-15 1.5E-19 164.0 14.2 125 11-138 230-397 (720)
77 KOG0352 ATP-dependent DNA heli 99.6 6E-15 1.3E-19 151.4 11.5 132 7-141 228-373 (641)
78 PRK01172 ski2-like helicase; P 99.6 1.4E-14 3.1E-19 160.2 14.5 117 20-138 235-387 (674)
79 TIGR01967 DEAH_box_HrpA ATP-de 99.6 1.1E-14 2.4E-19 168.6 12.5 122 8-132 263-406 (1283)
80 PF13959 DUF4217: Domain of un 99.6 6E-15 1.3E-19 116.5 6.6 64 157-220 1-65 (65)
81 KOG0329 ATP-dependent RNA heli 99.4 1.6E-13 3.5E-18 133.5 5.0 99 6-141 268-367 (387)
82 PRK09401 reverse gyrase; Revie 99.4 4.9E-13 1.1E-17 155.4 9.6 102 7-117 315-431 (1176)
83 PLN03142 Probable chromatin-re 99.4 2E-12 4.3E-17 147.9 14.3 133 5-140 469-611 (1033)
84 PRK09694 helicase Cas3; Provis 99.4 2.8E-12 6E-17 145.1 14.3 97 19-119 558-664 (878)
85 TIGR01054 rgy reverse gyrase. 99.4 2.2E-12 4.7E-17 150.2 13.5 87 8-102 314-409 (1171)
86 PRK14701 reverse gyrase; Provi 99.4 5.3E-13 1.2E-17 158.6 8.6 122 10-140 320-466 (1638)
87 TIGR00595 priA primosomal prot 99.4 2.7E-12 5.8E-17 138.1 12.0 97 34-131 271-382 (505)
88 PRK12904 preprotein translocas 99.4 5.9E-12 1.3E-16 140.6 13.8 125 4-132 411-575 (830)
89 COG1202 Superfamily II helicas 99.3 5.2E-12 1.1E-16 133.8 9.0 122 5-130 416-553 (830)
90 COG1200 RecG RecG-like helicas 99.3 2.9E-11 6.3E-16 131.2 14.5 180 6-186 456-661 (677)
91 PRK05580 primosome assembly pr 99.3 2.2E-11 4.9E-16 135.2 11.3 111 27-138 432-557 (679)
92 PRK13104 secA preprotein trans 99.2 5E-11 1.1E-15 133.7 12.6 126 4-132 425-589 (896)
93 COG1061 SSL2 DNA or RNA helica 99.2 1E-10 2.2E-15 123.9 13.9 114 5-122 266-382 (442)
94 PRK13107 preprotein translocas 99.2 1.3E-10 2.8E-15 130.2 12.0 125 5-132 431-593 (908)
95 KOG0353 ATP-dependent DNA heli 99.2 6.9E-11 1.5E-15 120.3 8.7 127 9-138 304-475 (695)
96 PRK11448 hsdR type I restricti 99.1 3.1E-10 6.8E-15 131.7 13.5 96 20-118 697-801 (1123)
97 COG4098 comFA Superfamily II D 99.1 8.3E-10 1.8E-14 111.6 12.6 125 11-138 293-424 (441)
98 COG1197 Mfd Transcription-repa 99.1 1.2E-09 2.6E-14 124.4 13.8 109 21-130 803-913 (1139)
99 COG1205 Distinct helicase fami 99.0 3.2E-09 6.9E-14 120.5 11.6 169 8-177 291-475 (851)
100 COG0556 UvrB Helicase subunit 98.9 8E-09 1.7E-13 109.5 12.8 129 4-136 427-563 (663)
101 KOG4150 Predicted ATP-dependen 98.9 1.3E-08 2.7E-13 108.3 10.8 168 20-188 524-702 (1034)
102 COG1204 Superfamily II helicas 98.8 1.9E-08 4E-13 113.1 12.0 120 20-141 252-420 (766)
103 COG1203 CRISPR-associated heli 98.8 1.8E-08 3.8E-13 113.2 10.2 113 20-138 439-558 (733)
104 KOG0953 Mitochondrial RNA heli 98.7 7.7E-08 1.7E-12 102.4 11.4 125 12-141 348-487 (700)
105 PRK12903 secA preprotein trans 98.7 1.1E-07 2.4E-12 106.5 12.8 124 4-132 407-541 (925)
106 KOG0950 DNA polymerase theta/e 98.7 7.5E-08 1.6E-12 107.6 10.4 120 21-141 460-622 (1008)
107 COG1643 HrpA HrpA-like helicas 98.7 5.5E-08 1.2E-12 109.7 9.4 111 18-130 256-387 (845)
108 KOG0922 DEAH-box RNA helicase 98.6 1E-07 2.2E-12 103.4 9.0 119 11-131 248-391 (674)
109 KOG0390 DNA repair protein, SN 98.6 5.9E-07 1.3E-11 100.1 14.2 136 6-143 577-723 (776)
110 PRK12326 preprotein translocas 98.5 6.9E-07 1.5E-11 98.9 13.1 128 4-134 408-551 (764)
111 KOG0387 Transcription-coupled 98.5 4.1E-07 8.9E-12 100.1 10.0 118 6-125 529-651 (923)
112 KOG0384 Chromodomain-helicase 98.5 4.5E-07 9.7E-12 103.4 9.9 131 8-141 684-824 (1373)
113 KOG0385 Chromatin remodeling c 98.4 7.7E-07 1.7E-11 97.7 9.6 147 3-153 467-623 (971)
114 PRK12899 secA preprotein trans 98.4 2E-06 4.3E-11 97.5 12.9 124 5-132 550-683 (970)
115 KOG0951 RNA helicase BRR2, DEA 98.4 1.7E-06 3.8E-11 98.9 11.8 132 14-146 539-718 (1674)
116 KOG0947 Cytoplasmic exosomal R 98.4 1E-06 2.2E-11 98.6 9.4 125 12-138 558-733 (1248)
117 KOG0923 mRNA splicing factor A 98.4 6.6E-07 1.4E-11 97.0 6.9 121 19-143 471-617 (902)
118 KOG0392 SNF2 family DNA-depend 98.3 2.6E-06 5.7E-11 97.3 11.6 117 6-123 1309-1445(1549)
119 COG0553 HepA Superfamily II DN 98.3 5.3E-06 1.1E-10 93.4 12.4 117 7-126 692-816 (866)
120 KOG0920 ATP-dependent RNA heli 98.3 1.3E-06 2.8E-11 99.0 7.4 122 9-132 397-546 (924)
121 TIGR01407 dinG_rel DnaQ family 98.2 1E-05 2.2E-10 92.5 13.5 106 20-129 673-813 (850)
122 PRK12901 secA preprotein trans 98.2 6.7E-06 1.5E-10 93.7 11.6 126 4-132 609-743 (1112)
123 KOG0924 mRNA splicing factor A 98.2 2.3E-06 5E-11 93.1 5.7 108 21-130 563-697 (1042)
124 KOG0391 SNF2 family DNA-depend 98.2 1E-05 2.3E-10 92.0 11.0 130 6-138 1259-1397(1958)
125 KOG0952 DNA/RNA helicase MER3/ 98.2 1.8E-05 4E-10 89.6 12.9 117 20-138 348-499 (1230)
126 KOG0389 SNF2 family DNA-depend 98.1 1.6E-05 3.5E-10 87.9 10.9 138 6-146 760-905 (941)
127 PRK13103 secA preprotein trans 98.1 1.6E-05 3.5E-10 90.1 11.0 126 4-132 430-593 (913)
128 COG1198 PriA Primosomal protei 98.1 2.2E-05 4.7E-10 87.8 11.6 116 22-140 483-613 (730)
129 KOG0948 Nuclear exosomal RNA h 98.1 4.3E-06 9.4E-11 91.8 5.8 111 18-130 380-539 (1041)
130 KOG0388 SNF2 family DNA-depend 98.1 1E-05 2.2E-10 88.5 8.0 129 7-138 1028-1164(1185)
131 PF13307 Helicase_C_2: Helicas 98.0 2.5E-05 5.4E-10 72.3 9.2 111 13-129 2-149 (167)
132 CHL00122 secA preprotein trans 98.0 5E-05 1.1E-09 85.8 12.9 83 5-89 406-491 (870)
133 COG1110 Reverse gyrase [DNA re 98.0 4.8E-05 1E-09 86.3 12.5 85 9-101 324-416 (1187)
134 KOG1015 Transcription regulato 98.0 1.6E-05 3.6E-10 89.0 8.3 123 3-126 1122-1271(1567)
135 KOG0926 DEAH-box RNA helicase 97.9 2.4E-05 5.2E-10 86.6 7.6 78 50-129 607-703 (1172)
136 KOG1123 RNA polymerase II tran 97.8 0.00011 2.3E-09 78.2 10.9 107 5-119 525-636 (776)
137 COG4096 HsdR Type I site-speci 97.7 0.00017 3.6E-09 80.7 9.5 94 21-117 426-525 (875)
138 KOG1000 Chromatin remodeling p 97.7 0.00014 3.1E-09 77.2 8.6 114 7-123 472-594 (689)
139 TIGR00348 hsdR type I site-spe 97.6 0.00071 1.5E-08 75.7 14.0 95 21-117 514-634 (667)
140 PRK12902 secA preprotein trans 97.6 0.00046 1E-08 78.3 12.4 82 5-88 421-505 (939)
141 PRK08074 bifunctional ATP-depe 97.6 0.0011 2.4E-08 76.8 14.9 80 20-102 751-835 (928)
142 KOG0949 Predicted helicase, DE 97.5 0.00017 3.7E-09 81.5 6.9 81 50-132 965-1050(1330)
143 KOG0386 Chromatin remodeling c 97.5 0.00028 6E-09 80.0 8.1 123 4-129 707-835 (1157)
144 COG4581 Superfamily II RNA hel 97.5 0.00036 7.8E-09 80.4 8.8 116 13-130 371-537 (1041)
145 COG1199 DinG Rad3-related DNA 97.4 0.0014 3.1E-08 72.7 13.0 88 9-102 468-559 (654)
146 KOG1002 Nucleotide excision re 97.3 0.0011 2.3E-08 70.8 8.8 134 6-142 619-762 (791)
147 PRK07246 bifunctional ATP-depe 97.2 0.0098 2.1E-07 68.2 16.3 77 20-101 646-724 (820)
148 PRK11747 dinG ATP-dependent DN 97.1 0.0059 1.3E-07 68.8 13.8 76 21-102 534-616 (697)
149 TIGR00596 rad1 DNA repair prot 97.1 0.0026 5.6E-08 72.6 10.4 39 5-43 268-317 (814)
150 KOG0925 mRNA splicing factor A 97.0 0.0021 4.4E-08 68.6 8.4 111 14-130 246-387 (699)
151 KOG4439 RNA polymerase II tran 97.0 0.0031 6.6E-08 69.7 9.6 116 7-125 729-851 (901)
152 COG0653 SecA Preprotein transl 97.0 0.002 4.3E-08 72.8 8.4 125 4-132 410-547 (822)
153 COG4889 Predicted helicase [Ge 96.9 0.0014 3.1E-08 73.7 6.6 105 22-127 461-585 (1518)
154 TIGR00604 rad3 DNA repair heli 96.9 0.0098 2.1E-07 67.0 12.6 86 13-102 515-615 (705)
155 KOG1016 Predicted DNA helicase 96.5 0.002 4.3E-08 71.6 3.6 108 20-128 718-845 (1387)
156 TIGR02562 cas3_yersinia CRISPR 96.4 0.013 2.8E-07 67.9 9.7 92 24-119 759-881 (1110)
157 PF06862 DUF1253: Protein of u 96.4 0.067 1.5E-06 57.2 14.4 118 18-138 297-423 (442)
158 smart00492 HELICc3 helicase su 96.1 0.06 1.3E-06 48.7 10.4 45 57-102 31-79 (141)
159 smart00491 HELICc2 helicase su 95.6 0.088 1.9E-06 47.7 9.5 41 61-102 32-80 (142)
160 TIGR03117 cas_csf4 CRISPR-asso 95.5 0.18 3.9E-06 56.4 13.1 91 9-104 459-563 (636)
161 PF13871 Helicase_C_4: Helicas 95.3 0.08 1.7E-06 53.4 8.7 78 63-141 51-141 (278)
162 PRK10917 ATP-dependent DNA hel 95.2 0.076 1.6E-06 59.8 9.4 77 20-97 309-389 (681)
163 PRK14873 primosome assembly pr 95.2 0.1 2.2E-06 58.7 10.1 92 33-138 439-546 (665)
164 PRK05580 primosome assembly pr 95.1 0.12 2.6E-06 58.3 10.2 92 6-100 173-267 (679)
165 TIGR00595 priA primosomal prot 94.7 0.17 3.6E-06 55.2 10.0 91 6-99 8-101 (505)
166 TIGR00643 recG ATP-dependent D 94.6 0.14 3E-06 57.1 9.2 77 20-97 283-363 (630)
167 COG1110 Reverse gyrase [DNA re 94.2 0.15 3.2E-06 59.1 8.2 74 8-82 112-191 (1187)
168 PRK14873 primosome assembly pr 93.6 0.29 6.3E-06 55.1 9.2 94 5-100 170-266 (665)
169 KOG0701 dsRNA-specific nucleas 93.4 0.053 1.2E-06 65.4 3.2 94 23-118 294-399 (1606)
170 TIGR00580 mfd transcription-re 93.2 0.42 9.1E-06 55.8 9.8 77 20-97 499-579 (926)
171 PRK10689 transcription-repair 93.1 0.45 9.7E-06 56.8 10.0 77 20-97 648-728 (1147)
172 COG0513 SrmB Superfamily II DN 93.0 0.38 8.2E-06 52.5 8.7 70 24-97 102-180 (513)
173 cd00268 DEADc DEAD-box helicas 92.9 0.73 1.6E-05 42.8 9.5 74 20-97 68-149 (203)
174 PRK11634 ATP-dependent RNA hel 92.5 0.5 1.1E-05 52.9 9.0 73 21-97 74-155 (629)
175 COG1198 PriA Primosomal protei 92.4 0.29 6.3E-06 55.5 6.9 92 3-97 225-319 (730)
176 PRK11776 ATP-dependent RNA hel 92.0 0.59 1.3E-05 49.8 8.5 76 21-100 72-156 (460)
177 KOG0951 RNA helicase BRR2, DEA 92.0 0.85 1.9E-05 54.1 10.0 119 20-144 1358-1508(1674)
178 KOG1001 Helicase-like transcri 91.5 0.08 1.7E-06 59.5 1.3 117 6-125 521-643 (674)
179 KOG0331 ATP-dependent RNA heli 89.9 5.6 0.00012 43.6 13.4 188 21-220 165-371 (519)
180 PRK11192 ATP-dependent RNA hel 88.8 2.3 5E-05 44.9 9.4 75 21-99 73-155 (434)
181 KOG0339 ATP-dependent RNA heli 88.7 4.7 0.0001 44.1 11.5 184 24-223 299-500 (731)
182 PRK14701 reverse gyrase; Provi 88.6 1.6 3.4E-05 54.0 8.9 62 20-81 121-187 (1638)
183 PF02399 Herpes_ori_bp: Origin 88.5 2.3 5E-05 48.7 9.6 103 20-131 281-389 (824)
184 TIGR01054 rgy reverse gyrase. 88.0 1.6 3.4E-05 52.4 8.4 62 20-81 120-187 (1171)
185 PRK04537 ATP-dependent RNA hel 87.1 2.6 5.6E-05 46.7 8.9 72 22-97 85-165 (572)
186 KOG0347 RNA helicase [RNA proc 87.0 1.8 4E-05 47.4 7.4 54 24-80 266-321 (731)
187 KOG2340 Uncharacterized conser 85.9 4.7 0.0001 44.3 9.6 112 22-136 553-674 (698)
188 KOG0389 SNF2 family DNA-depend 85.9 2.6 5.6E-05 48.0 8.0 67 14-83 441-510 (941)
189 PF10593 Z1: Z1 domain; Inter 85.0 3 6.6E-05 41.1 7.3 97 36-138 98-201 (239)
190 PRK10590 ATP-dependent RNA hel 85.0 4.8 0.0001 43.0 9.4 71 23-97 77-155 (456)
191 PRK04837 ATP-dependent RNA hel 84.2 5.8 0.00012 41.8 9.5 72 22-97 84-163 (423)
192 PF00270 DEAD: DEAD/DEAH box h 83.7 9.8 0.00021 33.7 9.6 74 20-97 43-125 (169)
193 PRK01297 ATP-dependent RNA hel 82.7 7.4 0.00016 41.7 9.7 72 22-97 163-243 (475)
194 PRK13766 Hef nuclease; Provisi 82.5 6.8 0.00015 44.6 9.8 79 19-102 56-142 (773)
195 KOG0338 ATP-dependent RNA heli 81.2 13 0.00028 40.9 10.5 58 20-80 251-310 (691)
196 PTZ00110 helicase; Provisional 81.1 6.8 0.00015 43.1 8.8 72 22-97 204-283 (545)
197 COG1200 RecG RecG-like helicas 80.0 8.7 0.00019 43.2 9.2 77 20-97 310-390 (677)
198 KOG0921 Dosage compensation co 78.8 2.4 5.1E-05 49.0 4.4 108 19-128 641-772 (1282)
199 PRK09401 reverse gyrase; Revie 77.5 9 0.00019 46.2 9.0 76 20-97 122-207 (1176)
200 smart00450 RHOD Rhodanese Homo 77.4 4.4 9.5E-05 32.2 4.6 39 19-59 54-93 (100)
201 cd00046 DEXDc DEAD-like helica 76.4 17 0.00036 30.0 8.1 78 7-87 12-95 (144)
202 KOG0330 ATP-dependent RNA heli 75.9 11 0.00025 39.9 8.0 99 9-111 117-232 (476)
203 TIGR00614 recQ_fam ATP-depende 75.7 13 0.00028 39.9 9.0 59 21-81 51-110 (470)
204 smart00487 DEXDc DEAD-like hel 75.3 17 0.00037 32.1 8.4 72 21-97 54-135 (201)
205 TIGR01389 recQ ATP-dependent D 74.8 15 0.00032 40.6 9.3 59 21-81 53-112 (591)
206 TIGR00963 secA preprotein tran 74.4 13 0.00028 42.6 8.7 62 15-81 91-154 (745)
207 cd01524 RHOD_Pyr_redox Member 73.7 5.6 0.00012 32.3 4.3 38 20-59 50-87 (90)
208 COG1197 Mfd Transcription-repa 71.5 18 0.00039 43.1 9.2 82 15-97 637-722 (1139)
209 TIGR00631 uvrb excinuclease AB 69.9 32 0.0007 38.9 10.6 107 5-113 39-175 (655)
210 cd01523 RHOD_Lact_B Member of 69.2 6 0.00013 32.6 3.6 38 20-59 60-97 (100)
211 KOG0385 Chromatin remodeling c 69.1 23 0.00051 40.7 9.0 66 19-87 215-283 (971)
212 TIGR03817 DECH_helic helicase/ 69.1 17 0.00038 41.6 8.4 93 19-116 79-189 (742)
213 KOG1513 Nuclear helicase MOP-3 69.1 4.3 9.3E-05 46.5 3.3 62 66-128 850-921 (1300)
214 cd01518 RHOD_YceA Member of th 67.3 10 0.00022 31.3 4.7 39 19-59 59-98 (101)
215 cd01449 TST_Repeat_2 Thiosulfa 67.1 10 0.00022 32.1 4.6 37 20-58 77-114 (118)
216 PLN00206 DEAD-box ATP-dependen 65.8 30 0.00064 37.8 9.0 73 21-97 196-276 (518)
217 COG1111 MPH1 ERCC4-like helica 65.7 20 0.00044 39.2 7.4 83 14-103 52-143 (542)
218 KOG1133 Helicase of the DEAD s 65.4 79 0.0017 36.2 12.0 79 20-102 628-720 (821)
219 cd06533 Glyco_transf_WecG_TagA 64.2 59 0.0013 30.1 9.6 69 10-78 33-105 (171)
220 cd01533 4RHOD_Repeat_2 Member 64.0 15 0.00032 30.8 5.1 39 20-60 65-105 (109)
221 PF03808 Glyco_tran_WecB: Glyc 63.1 48 0.0011 30.7 8.8 58 21-78 48-107 (172)
222 TIGR00696 wecB_tagA_cpsF bacte 61.6 76 0.0016 29.8 9.8 68 10-77 35-105 (177)
223 PRK13104 secA preprotein trans 61.6 31 0.00068 40.4 8.5 62 15-81 117-180 (896)
224 PRK05298 excinuclease ABC subu 61.3 70 0.0015 36.1 11.1 109 5-114 42-179 (652)
225 cd01519 RHOD_HSP67B2 Member of 61.1 11 0.00023 31.2 3.7 38 20-59 65-103 (106)
226 cd01526 RHOD_ThiF Member of th 60.9 11 0.00023 32.6 3.7 39 20-60 71-111 (122)
227 PRK11057 ATP-dependent DNA hel 60.8 39 0.00085 37.7 9.0 58 21-80 65-123 (607)
228 PRK09751 putative ATP-dependen 59.8 32 0.00069 42.5 8.5 75 21-99 37-132 (1490)
229 PTZ00424 helicase 45; Provisio 59.7 44 0.00095 34.5 8.6 75 21-99 96-178 (401)
230 cd01529 4RHOD_Repeats Member o 59.1 18 0.00039 29.5 4.6 38 19-58 54-92 (96)
231 cd01520 RHOD_YbbB Member of th 58.9 22 0.00047 31.0 5.3 38 20-59 85-123 (128)
232 cd01444 GlpE_ST GlpE sulfurtra 58.2 24 0.00053 28.4 5.2 37 20-58 55-92 (96)
233 cd01448 TST_Repeat_1 Thiosulfa 57.3 21 0.00046 30.4 5.0 38 20-59 78-117 (122)
234 KOG0329 ATP-dependent RNA heli 57.1 46 0.00099 33.8 7.7 76 22-101 111-195 (387)
235 KOG0298 DEAD box-containing he 57.1 23 0.0005 42.6 6.5 98 19-122 1219-1316(1394)
236 cd01534 4RHOD_Repeat_3 Member 56.5 14 0.00031 30.1 3.6 37 21-59 56-92 (95)
237 PRK12898 secA preprotein trans 55.7 38 0.00081 38.4 7.7 66 17-88 140-207 (656)
238 cd01525 RHOD_Kc Member of the 55.3 18 0.0004 29.7 4.1 37 21-59 65-102 (105)
239 PHA03371 circ protein; Provisi 55.3 9.6 0.00021 37.4 2.6 47 81-128 29-89 (240)
240 PRK02362 ski2-like helicase; P 54.7 27 0.00059 39.8 6.6 73 20-99 66-145 (737)
241 cd01528 RHOD_2 Member of the R 53.8 21 0.00045 29.4 4.2 39 20-60 57-96 (101)
242 cd01527 RHOD_YgaP Member of th 53.3 20 0.00043 29.3 4.0 37 21-59 54-91 (99)
243 PF12683 DUF3798: Protein of u 53.2 99 0.0021 31.4 9.4 80 19-105 60-144 (275)
244 cd01447 Polysulfide_ST Polysul 52.4 14 0.00031 30.1 2.9 38 20-59 60-98 (103)
245 KOG0335 ATP-dependent RNA heli 50.8 51 0.0011 35.9 7.5 55 22-80 153-210 (482)
246 KOG0345 ATP-dependent RNA heli 49.6 44 0.00096 36.5 6.6 71 23-97 81-163 (567)
247 PRK05320 rhodanese superfamily 49.1 35 0.00077 34.0 5.7 40 20-61 174-214 (257)
248 PRK13767 ATP-dependent helicas 48.6 58 0.0013 38.1 8.1 73 22-98 85-179 (876)
249 cd01521 RHOD_PspE2 Member of t 48.6 28 0.0006 29.3 4.2 38 20-59 63-102 (110)
250 PRK00254 ski2-like helicase; P 48.3 50 0.0011 37.6 7.4 73 20-99 67-146 (720)
251 COG3587 Restriction endonuclea 47.6 32 0.0007 40.0 5.5 72 69-141 480-564 (985)
252 cd01532 4RHOD_Repeat_1 Member 47.1 31 0.00068 28.0 4.2 37 21-59 50-89 (92)
253 TIGR02621 cas3_GSU0051 CRISPR- 46.7 39 0.00085 39.4 6.2 55 22-79 62-142 (844)
254 PRK12899 secA preprotein trans 46.2 69 0.0015 37.9 8.0 56 21-81 135-192 (970)
255 PF00581 Rhodanese: Rhodanese- 46.2 48 0.001 27.0 5.3 37 21-59 67-109 (113)
256 cd01445 TST_Repeats Thiosulfat 46.1 38 0.00083 30.2 4.9 38 20-59 94-135 (138)
257 PLN03137 ATP-dependent DNA hel 45.3 65 0.0014 38.9 7.7 58 21-80 500-560 (1195)
258 COG0052 RpsB Ribosomal protein 45.1 63 0.0014 32.3 6.5 38 7-44 48-86 (252)
259 PLN02160 thiosulfate sulfurtra 44.9 32 0.0007 30.6 4.2 39 20-60 80-119 (136)
260 PRK00162 glpE thiosulfate sulf 43.4 55 0.0012 27.3 5.3 46 12-59 48-95 (108)
261 PRK12904 preprotein translocas 43.1 81 0.0018 36.8 8.0 63 14-81 115-179 (830)
262 PRK09200 preprotein translocas 42.8 68 0.0015 37.2 7.3 62 14-80 112-176 (790)
263 KOG0350 DEAD-box ATP-dependent 42.6 57 0.0012 35.9 6.2 60 22-81 216-279 (620)
264 cd01522 RHOD_1 Member of the R 42.1 45 0.00098 28.5 4.6 38 20-59 63-101 (117)
265 cd01535 4RHOD_Repeat_4 Member 41.5 71 0.0015 28.8 6.0 37 21-59 49-86 (145)
266 KOG0383 Predicted helicase [Ge 41.1 15 0.00034 41.6 1.8 77 6-85 614-696 (696)
267 cd00158 RHOD Rhodanese Homolog 40.5 51 0.0011 25.5 4.4 38 19-58 48-86 (89)
268 COG4098 comFA Superfamily II D 40.2 1.3E+02 0.0027 32.0 8.0 124 4-140 125-253 (441)
269 KOG0348 ATP-dependent RNA heli 39.5 51 0.0011 36.6 5.3 89 21-113 211-317 (708)
270 COG1205 Distinct helicase fami 38.7 1.1E+02 0.0025 35.7 8.4 113 11-128 106-239 (851)
271 TIGR02981 phageshock_pspE phag 38.5 72 0.0016 27.0 5.2 36 21-58 58-93 (101)
272 PRK10287 thiosulfate:cyanide s 38.5 76 0.0017 27.1 5.4 37 21-59 60-96 (104)
273 KOG0342 ATP-dependent RNA heli 37.7 1.2E+02 0.0027 33.2 7.8 88 20-112 153-259 (543)
274 PRK11493 sseA 3-mercaptopyruva 37.3 49 0.0011 33.0 4.6 38 20-59 230-268 (281)
275 PRK01415 hypothetical protein; 36.7 54 0.0012 32.6 4.7 40 20-61 170-210 (247)
276 PRK01172 ski2-like helicase; P 35.2 92 0.002 35.1 6.8 70 21-97 65-141 (674)
277 KOG0334 RNA helicase [RNA proc 35.2 68 0.0015 38.0 5.7 62 22-88 439-502 (997)
278 PRK13103 secA preprotein trans 34.7 1.6E+02 0.0035 34.7 8.7 67 10-81 112-180 (913)
279 PF10141 ssDNA-exonuc_C: Singl 34.4 1.4E+02 0.0031 28.3 7.0 87 90-221 50-136 (195)
280 PF11496 HDA2-3: Class II hist 34.2 1.6E+02 0.0034 30.1 7.7 111 5-118 94-233 (297)
281 PRK15483 type III restriction- 32.7 1E+02 0.0022 36.6 6.8 69 72-141 501-579 (986)
282 cd00032 CASc Caspase, interleu 32.6 4.2E+02 0.009 25.8 10.2 84 20-112 8-108 (243)
283 PF13245 AAA_19: Part of AAA d 32.4 77 0.0017 25.4 4.2 49 4-55 19-74 (76)
284 PHA02558 uvsW UvsW helicase; P 31.4 1.6E+02 0.0034 32.0 7.7 67 20-97 157-228 (501)
285 COG3973 Superfamily I DNA and 31.2 2E+02 0.0043 32.7 8.2 75 7-101 641-717 (747)
286 PRK09375 quinolinate synthetas 31.2 6.2E+02 0.013 26.3 12.5 103 16-141 151-260 (319)
287 PRK06646 DNA polymerase III su 30.7 1.2E+02 0.0027 27.9 5.7 81 5-100 11-93 (154)
288 KOG0352 ATP-dependent DNA heli 30.2 76 0.0017 34.4 4.7 59 21-81 61-122 (641)
289 PF14424 Toxin-deaminase: The 29.7 1.3E+02 0.0028 27.1 5.6 35 22-56 97-133 (133)
290 PF04364 DNA_pol3_chi: DNA pol 29.7 1.5E+02 0.0033 26.4 6.1 79 9-101 15-96 (137)
291 smart00115 CASc Caspase, inter 28.7 2E+02 0.0044 28.0 7.3 84 19-111 6-106 (241)
292 cd01530 Cdc25 Cdc25 phosphatas 28.6 79 0.0017 27.4 3.9 40 20-59 67-118 (121)
293 PLN02723 3-mercaptopyruvate su 28.2 91 0.002 31.9 4.9 38 20-59 268-306 (320)
294 COG0607 PspE Rhodanese-related 27.6 57 0.0012 26.7 2.8 37 21-59 61-98 (110)
295 COG1204 Superfamily II helicas 27.5 1.5E+02 0.0033 34.3 7.0 71 21-97 76-152 (766)
296 KOG0387 Transcription-coupled 27.3 1.3E+02 0.0028 35.0 6.1 72 21-94 255-338 (923)
297 TIGR03865 PQQ_CXXCW PQQ-depend 27.0 97 0.0021 28.5 4.4 39 20-60 115-155 (162)
298 TIGR01587 cas3_core CRISPR-ass 26.8 1.9E+02 0.004 29.4 6.9 40 18-58 26-65 (358)
299 PF14617 CMS1: U3-containing 9 26.2 2.5E+02 0.0055 28.1 7.4 85 22-110 127-232 (252)
300 KOG0343 RNA Helicase [RNA proc 26.0 1.3E+02 0.0029 33.7 5.8 55 21-80 141-198 (758)
301 PLN02723 3-mercaptopyruvate su 26.0 92 0.002 31.8 4.5 48 11-60 90-142 (320)
302 PRK00142 putative rhodanese-re 25.8 91 0.002 32.0 4.4 40 20-61 170-210 (314)
303 COG0634 Hpt Hypoxanthine-guani 25.7 85 0.0018 29.9 3.7 83 6-88 18-109 (178)
304 PF02445 NadA: Quinolinate syn 25.4 86 0.0019 32.2 4.0 50 90-141 185-239 (296)
305 PLN03142 Probable chromatin-re 25.1 2.8E+02 0.006 33.4 8.6 57 21-80 219-277 (1033)
306 PTZ00254 40S ribosomal protein 24.9 81 0.0018 31.5 3.7 38 7-44 56-93 (249)
307 PF09805 Nop25: Nucleolar prot 24.2 2.3E+02 0.0051 25.5 6.2 9 302-310 8-16 (137)
308 PRK11784 tRNA 2-selenouridine 24.0 2.1E+02 0.0046 29.8 6.7 49 20-71 87-136 (345)
309 TIGR02744 TrbI_Ftype type-F co 23.5 4.8E+02 0.01 23.0 7.8 58 20-88 29-99 (112)
310 smart00493 TOPRIM topoisomeras 23.4 2.5E+02 0.0053 21.5 5.6 59 24-85 2-60 (76)
311 KOG1002 Nucleotide excision re 22.5 1.9E+02 0.0041 32.2 6.0 65 11-80 221-285 (791)
312 PRK11493 sseA 3-mercaptopyruva 22.5 1.3E+02 0.0028 29.9 4.7 48 11-60 74-126 (281)
313 KOG2963 RNA-binding protein re 22.1 3.1E+02 0.0068 28.9 7.3 34 32-71 38-72 (405)
314 COG1922 WecG Teichoic acid bio 22.1 5.3E+02 0.012 25.9 8.8 70 9-78 94-167 (253)
315 KOG0340 ATP-dependent RNA heli 21.9 2.1E+02 0.0046 30.4 6.0 57 21-80 75-133 (442)
316 TIGR03714 secA2 accessory Sec 21.8 2.8E+02 0.006 32.3 7.6 62 15-81 105-173 (762)
317 PRK04020 rps2P 30S ribosomal p 21.6 2.8E+02 0.0061 26.9 6.6 36 8-44 54-89 (204)
318 PHA02653 RNA helicase NPH-II; 21.6 2.6E+02 0.0056 32.0 7.3 70 21-97 222-297 (675)
319 COG0379 NadA Quinolinate synth 21.3 7.9E+02 0.017 25.6 9.9 50 90-141 209-263 (324)
320 cd01443 Cdc25_Acr2p Cdc25 enzy 20.9 2.7E+02 0.0058 23.3 5.7 38 20-59 65-110 (113)
321 TIGR03167 tRNA_sel_U_synt tRNA 20.7 2.3E+02 0.0049 29.1 6.1 37 22-60 75-112 (311)
322 TIGR00434 cysH phosophoadenyly 20.2 6.3E+02 0.014 23.8 8.7 51 21-71 13-63 (212)
323 COG0159 TrpA Tryptophan syntha 20.2 8.4E+02 0.018 24.7 9.8 127 8-141 3-169 (265)
324 KOG1802 RNA helicase nonsense 20.1 4.2E+02 0.009 30.7 8.2 42 11-55 445-486 (935)
No 1
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-83 Score=659.28 Aligned_cols=429 Identities=43% Similarity=0.677 Sum_probs=353.5
Q ss_pred CccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 1 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
|+||..+|+++||+||++|+..|+|||++||++|.|+|+.|++++||+++++|||+|+|..|..++.+|.. ...|||||
T Consensus 293 ~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T 372 (758)
T KOG0343|consen 293 VIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT 372 (758)
T ss_pred EEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcch-HHHHHHHHHcCCCcccccccccccchH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREAKIPIHFTKANTKRLQPV 158 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E-~~~l~~L~~~~i~i~~~~i~~~k~~~i 158 (454)
||++||||| |+||||||||||.++++||||||||||++..|.|+++++|+| +.|+..|+.++||+.++.+++.++.+|
T Consensus 373 Dv~aRGLDF-paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i 451 (758)
T KOG0343|consen 373 DVAARGLDF-PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSI 451 (758)
T ss_pred hhhhccCCC-cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhH
Confidence 999999999 999999999999999999999999999999999999999999 589999999999999999999999999
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcc-cccccccccCCCCCCCCCcc
Q 012877 159 SGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK-IRFLNQKKGKMVPVKPVLDN 237 (454)
Q Consensus 159 ~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~-i~~l~~~~~~k~~~~~~~~~ 237 (454)
+.+++++|+++|+|++.||+||++|+||+|.++++.+|++..|++.+||.||||+++|+ ++|+.....+++ +.+..+.
T Consensus 452 ~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~~~~~l~~~~k~~~-~~~l~e~ 530 (758)
T KOG0343|consen 452 RNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPRIVRFLNKKAKKQG-IEQLMEQ 530 (758)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCchhccchhhHHHhcC-hHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999 999886554444 2211100
Q ss_pred hhhhhhhhhhhccCCCCCCc-CcCCCCCCeeeecccccccc------c-----ccchh-------hhHHHHhhhhhhhhh
Q 012877 238 AEKEDKLMISREKLLPDNFT-EENVDRDILETKDIEDEGKA------D-----LLEDV-------MRATRVKKNKKLKIN 298 (454)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~k~~~~~~~~------~-----~~~~~-------~~~~k~~~~kk~~~~ 298 (454)
+- + +.+ +..+++|||+||+++...+- + ....+ .+.+|.+.+||+ ++
T Consensus 531 ~~------------~--~eeee~~~~ed~f~vK~~dvlge~~~l~ee~~~ek~d~~~~svkk~~k~~~tKva~aKKa-~~ 595 (758)
T KOG0343|consen 531 SV------------D--EEEEEATDDEDFFKVKKHDVLGEPEQLKEEDAAEKEDNDFISVKKKDKKRVTKVALAKKA-LK 595 (758)
T ss_pred hc------------c--chhhhccchhhhhheeccccccchhhhhhhhhhhcccCCCceeccchhhhHHHHHHHHHH-HH
Confidence 00 0 111 11135567777776554320 0 00111 235899999999 99
Q ss_pred ccCCCCCeeeecCCCCCCCchhhhhccc---ccCcCcChHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHHHHHHHHh
Q 012877 299 VHRPLGTRLVFDEECNTVPPLAMLADTK---NANVSLDQDQKTEYYKKIREELKRADKEDKLLDRQRRREKRIKQKMKRK 375 (454)
Q Consensus 299 ~~~~~~~k~~fd~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~dk~~~k~~~~~k~~k~k~~~~ 375 (454)
+++++|+|++|||||+++| .|++..+. ..|+. +++...|+.+++++|+++|++||+++|+++++||+++++++|
T Consensus 596 k~~kvnsK~~FddEGe~~~-~~~~~~e~~~~~~~~d--~~~~g~~l~k~~a~l~~~D~~DK~~~kek~~ek~r~k~~k~r 672 (758)
T KOG0343|consen 596 KNLKVNSKLTFDDEGELAP-EYEQMPETITSKAGDD--DDTGGINLEKAKAELKEEDKEDKKRFKEKRKEKRREKLEKER 672 (758)
T ss_pred HhhccCceeeecCccccch-hhhhchhhhhhhccCc--hhhccchHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888 77776665 33554 888889999999999999999999999999999999999998
Q ss_pred cCCCCC--CC-CCc-cc-----CCcCCCC-chhhhhccccccccccCCCCCCchhh-hhcCCCCCCCCCCCCChHHHHHH
Q 012877 376 RGGLGD--DD-DEE-DE-----DNASDKD-EESMERGRRKKAKIYFDSDSDNDNDE-RKQNKDDNGPNIDSISLAEQEAL 444 (454)
Q Consensus 376 ~~~~~~--~~-~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~e~l 444 (454)
+.+++. ++ ++. .+ +.|+++| +.++-+.|.+..|+|+.+.++.+... .....+++.+. ++.++||+|+|
T Consensus 673 r~aeea~~~e~e~~e~d~~~~~~~gs~dD~d~s~lPd~dk~~kk~~~d~de~e~k~~s~~~~~g~k~~-~~~~~eD~e~~ 751 (758)
T KOG0343|consen 673 RRAEEANEEEAEAEEEDGDFVDWSGSEDDPDISWLPDPDKVRKKKESDSDENEGKIQSALAADGIKEV-SNSSVEDVEPL 751 (758)
T ss_pred HHHHhcccccccchhccCchhcccCCcccCCcccCCChhhhhhccccCchhhcccccccccccccccc-CCcchhhcchh
Confidence 754321 11 111 11 1244444 33345566677777876555544321 22334566666 89999999999
Q ss_pred HHHhHh
Q 012877 445 ALKLLN 450 (454)
Q Consensus 445 a~~ll~ 450 (454)
|++|..
T Consensus 752 ~~k~~~ 757 (758)
T KOG0343|consen 752 ALKLKK 757 (758)
T ss_pred hHHhhc
Confidence 999875
No 2
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-45 Score=377.29 Aligned_cols=221 Identities=30% Similarity=0.523 Sum_probs=208.9
Q ss_pred CccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 1 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
++|++.+|+..|++||.++...|+||||+||..|+|++.+|..+.+.++++++||.|+|..|..++..|+. ..+||+||
T Consensus 235 ~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 235 LVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred eEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 57999999999999999999999999999999999999999998889999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcC-CCcccccccccccchH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAK-IPIHFTKANTKRLQPV 158 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~-i~i~~~~i~~~k~~~i 158 (454)
||++||||| |+||||||||+|.+++.|+||||||||+|+.|.||+|++|.|..|+..|.-++ ++++.+........ +
T Consensus 315 DVaARGlDi-p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~-~ 392 (567)
T KOG0345|consen 315 DVAARGLDI-PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLS-V 392 (567)
T ss_pred hhhhccCCC-CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchh-H
Confidence 999999999 99999999999999999999999999999999999999999999999999985 66666665544333 7
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcccccccc
Q 012877 159 SGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ 223 (454)
Q Consensus 159 ~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~l~~ 223 (454)
.+.|.+++..+..+.+.+.+||+||+|+|..|.+..||.+++||++.+|.+|||...|+|+++++
T Consensus 393 ~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~YgLl~lP~M~Elk~ 457 (567)
T KOG0345|consen 393 YQDIRSIISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLYGLLRLPKMPELKQ 457 (567)
T ss_pred HHHHHHHhcccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHHHHHhCCCcHHHhh
Confidence 78899999999999999999999999999999999999999999999999999999999999985
No 3
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7e-45 Score=374.21 Aligned_cols=220 Identities=33% Similarity=0.660 Sum_probs=212.0
Q ss_pred CccCcchHHHHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 1 MIVPLEQKLDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~~~-~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
||+|...++-+|++||+.|.+ .|+||||+||..|.|++++|+.+ .++|..+||+++|..|..++.+|++ +..||||
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~c 386 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVC 386 (543)
T ss_pred EeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhcccceEEe
Confidence 578889999999999999987 89999999999999999999987 8999999999999999999999999 9999999
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcCCCcccccccccccchH
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPV 158 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~i~i~~~~i~~~k~~~i 158 (454)
|||+|||+|| |+|+||||||+|.++.+||||+|||||.|..|.+++|+.|.|..||+.|+ .+|+++..+++.+...+
T Consensus 387 TDVaARGlD~-P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK--~lpl~~~e~~~~~~~~v 463 (543)
T KOG0342|consen 387 TDVAARGLDI-PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK--KLPLEEFEFPPLKPEDV 463 (543)
T ss_pred cchhhccCCC-CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh--hCCCcccCCCCCCHHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcccccccccc
Q 012877 159 SGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQKK 225 (454)
Q Consensus 159 ~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~l~~~~ 225 (454)
+.+++.++..+..+++.|+.||-+|++.|..+..+.+|+++.|++.++|.|||++.||.+.......
T Consensus 464 ~~~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~La~~~~s~gf~~pp~v~~~i~~~ 530 (543)
T KOG0342|consen 464 QSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLELAAVAKSFGFSVPPAVDLKIDGK 530 (543)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhcccccchhhHHHHHHHcCCCCCccceeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999998855433
No 4
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=335.60 Aligned_cols=218 Identities=32% Similarity=0.539 Sum_probs=192.0
Q ss_pred CccCcchHHHHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHhcC--------------------CCCceEeecCC
Q 012877 1 MIVPLEQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKKLR--------------------PGIPLMCLYGR 56 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~----~~~KiIVF~sS~k~v~~l~~~L~~l~--------------------~gi~v~~LHG~ 56 (454)
+|||+.-+|-.|..+|.++ ...|+|||++||..|+|.|.+|.... -+..++.|||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 4789999999999999764 36799999999999999999997642 14567899999
Q ss_pred CCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHH
Q 012877 57 MKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 135 (454)
Q Consensus 57 msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l 135 (454)
|+|+.|..+++.|+. ...||+|||||+||||+ |.|+||||||+|.+++.|+||||||||+|..|.+++|+.|+|..|+
T Consensus 481 m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDl-P~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~ 559 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDL-PHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYV 559 (708)
T ss_pred hhHHHHHHHHHhhccccceEEEehhhhhccCCC-CCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHH
Confidence 999999999999999 88899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccccc------------------ccccchHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhcC--CCccc
Q 012877 136 EKLREAKIPIHFTKAN------------------TKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ--KDKEV 195 (454)
Q Consensus 136 ~~L~~~~i~i~~~~i~------------------~~k~~~i~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~--~~k~i 195 (454)
..|+.+.+.+.+.++. .....+++..++.++..++.++.+|.+||+||+|.|..+ ..+.|
T Consensus 560 ~~l~~~~~~l~q~~~~~~l~~~~~~~~k~~~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~i 639 (708)
T KOG0348|consen 560 NYLKKHHIMLLQFDMEILLPAFKPRKDKAKTKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSI 639 (708)
T ss_pred HHHHhhcchhhccchhhhhhhcCcccccccchhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccc
Confidence 9999886655443221 122345677889999999999999999999999998655 57899
Q ss_pred ccccCCCHHHHHHHcCCCCCc-ccc
Q 012877 196 FDVTKLSIDEFSASLGLPMTP-KIR 219 (454)
Q Consensus 196 F~v~~Ldl~~~A~S~GL~~~P-~i~ 219 (454)
|++..|+++++|+||||..+| ++.
T Consensus 640 Fnvr~lHlGH~AKSFaLReaP~k~~ 664 (708)
T KOG0348|consen 640 FNVRFLHLGHVAKSFALREAPGKLS 664 (708)
T ss_pred eehhhhhhhHHHHhhHhhhcchhhh
Confidence 999999999999999999999 443
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.3e-31 Score=264.31 Aligned_cols=157 Identities=31% Similarity=0.556 Sum_probs=141.3
Q ss_pred CccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 1 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
+++|...|...|.++|+...+..+||||+||..+++++-+|+.+ |+.+..|||.|+|..|...++.|++ ...|||||
T Consensus 280 lfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 280 LFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred EeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 35788899999999999999999999999999999999999998 9999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccccccccchH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTKRLQPV 158 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~~~k~~~i 158 (454)
||++||||+ |.|++|||||+|.+..+||||||||||+|++|.+|.|++..+...+++|+.. +-......++.+....+
T Consensus 358 DVaSRGLDi-p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l 436 (476)
T KOG0330|consen 358 DVASRGLDI-PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSL 436 (476)
T ss_pred chhcccCCC-CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999876 54444444444333333
Q ss_pred HH
Q 012877 159 SG 160 (454)
Q Consensus 159 ~~ 160 (454)
..
T Consensus 437 ~e 438 (476)
T KOG0330|consen 437 NE 438 (476)
T ss_pred HH
Confidence 33
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.7e-29 Score=266.71 Aligned_cols=137 Identities=33% Similarity=0.557 Sum_probs=129.5
Q ss_pred ccCcch-HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~~~-Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
.|+... |+.+|+.+|......++||||+|+..|+.++..|... |+.+..|||+|+|.+|..++..|++ ...|||||
T Consensus 253 ~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT 330 (513)
T COG0513 253 EVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT 330 (513)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 345544 9999999999888889999999999999999999987 8999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcc-hHHHHHHHHHc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKMLEKLREA 141 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~-E~~~l~~L~~~ 141 (454)
||++||||| |+|++|||||+|.++++|+||+|||||+|+.|.+++|+++. |..++..++..
T Consensus 331 DvaaRGiDi-~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 331 DVAARGLDI-PDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred chhhccCCc-cccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999997 77888888876
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=260.35 Aligned_cols=134 Identities=31% Similarity=0.522 Sum_probs=124.3
Q ss_pred ccCcchHHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEE
Q 012877 2 IVPLEQKLDMLWSFIKAH---LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 77 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~---~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLV 77 (454)
+|+...|...|..+|... ..+|+||||+|.+.|+.|...|+.. ++++.+|||+.+|.+|..+++.|++ ++.|||
T Consensus 319 ~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLV 396 (519)
T KOG0331|consen 319 VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREGKSPVLV 396 (519)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccCCcceEE
Confidence 567788889998888765 4679999999999999999999985 7999999999999999999999999 999999
Q ss_pred eccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 78 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 78 aTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
||||||||||| |+|++|||||+|.+++.||||+|||||+|+.|.+++|+++.+......+
T Consensus 397 ATdVAaRGLDi-~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l 456 (519)
T KOG0331|consen 397 ATDVAARGLDV-PDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLAREL 456 (519)
T ss_pred EcccccccCCC-ccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999887555544
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.3e-28 Score=244.42 Aligned_cols=149 Identities=30% Similarity=0.502 Sum_probs=138.1
Q ss_pred CccCcchHHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEE
Q 012877 1 MIVPLEQKLDMLWSFIKAH---LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVL 76 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~---~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VL 76 (454)
|+||...|-..|+.+|+.. .+..++||++||..++.++..|..+ ++.+.+|||.|+|.+|...+.+|+. ...||
T Consensus 231 I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~il 308 (442)
T KOG0340|consen 231 ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAARIL 308 (442)
T ss_pred eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCccEE
Confidence 5788889999999999753 3578999999999999999999998 9999999999999999999999999 99999
Q ss_pred EeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccccc
Q 012877 77 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANT 152 (454)
Q Consensus 77 VaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~~ 152 (454)
||||||+||||| |.|++|||||+|.+|.+||||||||||+|+.|.+|.|+++.+...+..+++. |-.+.+++..+
T Consensus 309 iaTDVAsRGLDI-P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 309 IATDVASRGLDI-PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred EEechhhcCCCC-CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999887 76776665543
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.1e-28 Score=238.80 Aligned_cols=145 Identities=26% Similarity=0.490 Sum_probs=136.1
Q ss_pred Ccch-HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 4 PLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~-Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
..++ |+++|+++.....-.++||||||+..|++|.+-++.. .+.+.++||.|+|.+|..++.+|+. ++.||+||||
T Consensus 248 e~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 248 EKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred chhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCceEEEEech
Confidence 3444 9999999998888899999999999999999999986 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
.+||||+ |.|++|||||+|.+.+.||||+||.||.|+.|.+|.|+...+...+..+++. +..+.+++++
T Consensus 326 waRGiDv-~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 326 WARGIDV-QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred hhccCCc-ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999 9999999999999999999999999999999999999999999999999887 7777777665
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.95 E-value=8.5e-28 Score=249.51 Aligned_cols=134 Identities=29% Similarity=0.528 Sum_probs=126.1
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|...|..+|.++...++|||+|+.+.|+.|+..|.++ |+.+..|||+-+|++|..++..|+. ..+|||||||
T Consensus 499 ~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~--g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv 576 (673)
T KOG0333|consen 499 VSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA--GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV 576 (673)
T ss_pred ecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc--cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc
Confidence 456778999999999998899999999999999999999998 9999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHH
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 139 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~ 139 (454)
|+||||| |+|.+|||||++.+++.|+||||||||+|+.|.++.|+++.+-..+..|.
T Consensus 577 AgRGIDI-pnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333|consen 577 AGRGIDI-PNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred cccCCCC-CccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999865444443
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=7.7e-27 Score=243.84 Aligned_cols=140 Identities=26% Similarity=0.441 Sum_probs=130.1
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
....|+.+|..++......++||||+|+..|+.++..|... |+.+..+||+|++.+|..+++.|++ +..||||||++
T Consensus 238 ~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~ 315 (423)
T PRK04837 238 SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVA 315 (423)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechh
Confidence 34679999999998887889999999999999999999876 9999999999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcc
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIH 146 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~ 146 (454)
+||||| |+|++|||||+|.++..|+||+|||||.|+.|.|++|+++.+...+..++.. +..+.
T Consensus 316 ~rGiDi-p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 316 ARGLHI-PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred hcCCCc-cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 999999 9999999999999999999999999999999999999999998888888665 44443
No 12
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=239.58 Aligned_cols=165 Identities=28% Similarity=0.438 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG 85 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRG 85 (454)
.+-.+|.+++.......+||||.|.++++.+.-+|.-+ |+.+..|||.++|.+|.+.++.|+. ++.||||||||+||
T Consensus 412 dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRG 489 (691)
T KOG0338|consen 412 DREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRG 489 (691)
T ss_pred ccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhcc
Confidence 46778899998888889999999999999999998877 9999999999999999999999999 99999999999999
Q ss_pred cccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc----CCCccccccccccc------
Q 012877 86 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA----KIPIHFTKANTKRL------ 155 (454)
Q Consensus 86 LD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~----~i~i~~~~i~~~k~------ 155 (454)
||| ++|..||||+||.+...|+||||||||+|+.|.++.|+..++..+|+.+... +-++....+++...
T Consensus 490 LDI-~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ 568 (691)
T KOG0338|consen 490 LDI-EGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKK 568 (691)
T ss_pred CCc-cceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999887654 44555555554433
Q ss_pred -chHHHHHHHHHhhChhHHH
Q 012877 156 -QPVSGLLAALLVKYPDMQH 174 (454)
Q Consensus 156 -~~i~~~l~~ll~~~~el~~ 174 (454)
..+...++.++....+-++
T Consensus 569 ieemE~~iq~vl~eE~~eke 588 (691)
T KOG0338|consen 569 IEEMEDTIQAVLDEEREEKE 588 (691)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 3444555565555444433
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=2.8e-25 Score=243.25 Aligned_cols=147 Identities=31% Similarity=0.460 Sum_probs=136.0
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|+..|..+|..+...++||||+|+..+..++..|... |+.+.++||.|++.+|..++++|+. +..||||||+
T Consensus 227 v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv 304 (629)
T PRK11634 227 VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 (629)
T ss_pred echhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch
Confidence 344578999999998887889999999999999999999986 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccccc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANT 152 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~~ 152 (454)
++||||+ |+|++|||||+|.++++|+||+|||||+|+.|.|++|+.+.+..+++.++.. ++.+..+.++.
T Consensus 305 ~arGIDi-p~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 305 AARGLDV-ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred HhcCCCc-ccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999 9999999999999999999999999999999999999999999999999876 77776665553
No 14
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5e-27 Score=244.82 Aligned_cols=137 Identities=36% Similarity=0.495 Sum_probs=127.7
Q ss_pred CccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 1 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
|.||+.+|--.||.||-.+ ++++|||||+...|..|+-+|..+ +|+.+.||+.|.|.+|+..+++|++ ..+|||||
T Consensus 444 I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L--~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaT 520 (731)
T KOG0347|consen 444 IECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNL--DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIAT 520 (731)
T ss_pred hcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhc--CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEee
Confidence 4688888888899999555 567999999999999999999998 9999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
||||||||| |+|.|||||.+|.+.+.||||.|||||++..|.+++|+.|.+...+..|...
T Consensus 521 DVAARGLDI-p~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~kt 581 (731)
T KOG0347|consen 521 DVAARGLDI-PGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKT 581 (731)
T ss_pred hhhhccCCC-CCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999777776543
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=1.3e-25 Score=237.10 Aligned_cols=143 Identities=29% Similarity=0.468 Sum_probs=132.3
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|+..|..+|..+...++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++ ...||||||+
T Consensus 224 ~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv 301 (460)
T PRK11776 224 VSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDV 301 (460)
T ss_pred eCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecc
Confidence 456679999999998888889999999999999999999986 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFT 148 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~ 148 (454)
++||||+ |+|++|||||+|.++.+|+||+|||||+|+.|.|++|+.+.+...+..++.. +..+...
T Consensus 302 ~~rGiDi-~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~ 368 (460)
T PRK11776 302 AARGLDI-KALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWE 368 (460)
T ss_pred cccccch-hcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCcee
Confidence 9999999 9999999999999999999999999999999999999999998888888765 5554443
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=3.3e-25 Score=234.16 Aligned_cols=140 Identities=29% Similarity=0.425 Sum_probs=129.1
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|..+|..++......++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++ ...||||||+
T Consensus 227 ~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv 304 (456)
T PRK10590 227 VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDI 304 (456)
T ss_pred cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccH
Confidence 445677888888888777889999999999999999999886 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPI 145 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i 145 (454)
++||||| |+|++|||||+|.++.+|+||+|||||.|..|.+++|+++.+..+++.++.. +..+
T Consensus 305 ~~rGiDi-p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 305 AARGLDI-EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred HhcCCCc-ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 9999999 9999999999999999999999999999999999999999999888888765 4443
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=4.6e-25 Score=239.39 Aligned_cols=136 Identities=27% Similarity=0.451 Sum_probs=127.9
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
+....|+..|..++......++||||+|+..|+.++..|... ++.+..|||+|++.+|..+++.|++ ...||||||+
T Consensus 239 ~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv 316 (572)
T PRK04537 239 PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (572)
T ss_pred cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh
Confidence 345678999999998888889999999999999999999886 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
++||||| |+|++|||||+|.++.+|+||+|||||.|..|.|++|+++.+..++..++..
T Consensus 317 ~arGIDi-p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 317 AARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred hhcCCCc-cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999988888887664
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=8.6e-25 Score=228.86 Aligned_cols=134 Identities=29% Similarity=0.496 Sum_probs=126.3
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
...|+.+|..+++.....++||||+|+..++.++..|... ++.+..+||+|++.+|..++..|++ ...||||||+++
T Consensus 229 ~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~ 306 (434)
T PRK11192 229 LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAA 306 (434)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccc
Confidence 3678999999998777889999999999999999999885 8999999999999999999999999 999999999999
Q ss_pred cccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 84 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
||||+ |+|++|||||+|.++.+|+||+|||||+|..|.+++|+...+..++..++..
T Consensus 307 ~GiDi-p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~ 363 (434)
T PRK11192 307 RGIDI-DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERY 363 (434)
T ss_pred cCccC-CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999998888887653
No 19
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.5e-25 Score=220.31 Aligned_cols=146 Identities=25% Similarity=0.451 Sum_probs=137.2
Q ss_pred ccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 2 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.|...+|+-.|-+++.+..-.++||||||...|+.++.-+.++ |++++.+|++|-|+.|..++..|++ .+..|||||
T Consensus 303 fV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred eechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 3567889999999998888888999999999999999999998 9999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 150 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i 150 (454)
++.||||+ ++|++|||||+|.++++|+||+||+||.|.-|.||.+++..+...|.++++. +..|+.+..
T Consensus 381 L~TRGIDi-qavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 381 LFTRGIDI-QAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred hhhccccc-ceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999 9999999999999999999999999999999999999999999999999887 777776653
No 20
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=8.3e-25 Score=236.19 Aligned_cols=135 Identities=33% Similarity=0.590 Sum_probs=123.6
Q ss_pred cCcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 3 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
++...|...|..+|... ...++||||+|+..|+.++..|+.. |+++.++||+|++.+|..+++.|++ ...|||||
T Consensus 357 ~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT 434 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT 434 (545)
T ss_pred EechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc
Confidence 44567888898888765 4679999999999999999999875 8999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
|+++||||| |+|++|||||+|.++.+|+||+|||||.|+.|.|++|+++.+..++..|..
T Consensus 435 dv~~rGIDi-~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 435 DVASRGLDV-KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred chhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999999998766655543
No 21
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=217.92 Aligned_cols=146 Identities=25% Similarity=0.461 Sum_probs=130.8
Q ss_pred ccCc-chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~-~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
+|+. .+|++.|..+.....-+..||||.|++++.+++..+... |..+.+|||.|.-.+|..++.+|+. ...|||+|
T Consensus 310 ~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 310 LCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred eccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCcceEEEEe
Confidence 4554 679999999877666788999999999999999999987 9999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCC------ChhHHHHHHhccccCCCCceEEEEeCcchH-HHHHHHHHc-CCCcccccc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLREA-KIPIHFTKA 150 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~------~~~~YIhRvGRtgR~g~~G~ail~l~p~E~-~~l~~L~~~-~i~i~~~~i 150 (454)
+|++||||+ +.|++|||||+|. +.++|+||||||||.|+.|.++.|+...+. .++..|+.+ +..+..+..
T Consensus 388 nV~ARGiDv-~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 388 NVCARGIDV-AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred chhhccccc-ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999999 9999999999996 799999999999999999999999988766 788888776 555544443
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=3.8e-24 Score=227.01 Aligned_cols=140 Identities=30% Similarity=0.474 Sum_probs=129.6
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
+...+|..+|..++......++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++ +..|||||++
T Consensus 317 ~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~ 394 (475)
T PRK01297 317 VAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394 (475)
T ss_pred ecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 345678899999998887889999999999999999999876 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPI 145 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i 145 (454)
++||||| |+|++||+||+|.++.+|+||+|||||.|+.|.+++|+...+..++..++.. +.++
T Consensus 395 l~~GIDi-~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 395 AGRGIHI-DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred cccCCcc-cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999 9999999999999999999999999999999999999999988888888765 5544
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.91 E-value=3.2e-24 Score=230.32 Aligned_cols=135 Identities=24% Similarity=0.453 Sum_probs=121.3
Q ss_pred cCcchHHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 3 VPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
++...|...|+.+|.... ..++||||+|+..++.++..|... .|+.+..+||+|++.+|..+++.|+. ...|||||
T Consensus 347 ~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 347 VETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred ccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 445667888888887543 468999999999999999999764 38899999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 139 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~ 139 (454)
|+++||||| |+|++|||||+|.++.+|+||+|||||.|..|.+++|+++.+..++..|.
T Consensus 426 dvl~rGiDi-p~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 426 GVLGRGVDL-LRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred cHhhccCCc-ccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999998876555443
No 24
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=3.1e-23 Score=220.04 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=121.2
Q ss_pred hHHHHHHHHHH-hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccc
Q 012877 7 QKLDMLWSFIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 7 ~Kl~~L~~~Lk-~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaR 84 (454)
..+..|..+|. .+.+..+||||+|++.++.++..|+.. |+.+..+||+|++.+|..+++.|+. ...|||||++++|
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~ 288 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGM 288 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhc
Confidence 35566777776 445666799999999999999999986 9999999999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 85 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
|||+ |+|++||||++|.+++.|+||+|||||.|..|.|++|+.+.+...++.+...
T Consensus 289 GID~-p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 289 GINK-PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred cCCc-ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999999888777553
No 25
>PTZ00424 helicase 45; Provisional
Probab=99.90 E-value=1.7e-23 Score=215.79 Aligned_cols=141 Identities=26% Similarity=0.522 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaR 84 (454)
..++..|..++......++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++ ...|||||++++|
T Consensus 252 ~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~ 329 (401)
T PTZ00424 252 EWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLAR 329 (401)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccC
Confidence 347777888887777789999999999999999999886 8999999999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccc
Q 012877 85 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTK 149 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~ 149 (454)
|||| |+|++||+||+|.++..|+||+||+||.|+.|.|++|+++.+..++..++.. +..+.++.
T Consensus 330 GiDi-p~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 330 GIDV-QQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CcCc-ccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999 9999999999999999999999999999999999999999999888888765 66555543
No 26
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=6.7e-24 Score=215.45 Aligned_cols=135 Identities=31% Similarity=0.484 Sum_probs=124.1
Q ss_pred ccCcchHHHHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPLEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~-~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
|+...+|+.++-.|+.++. ..|+||||++.-.++-|..-|+-- ||.+-+|||+-.|.+|...++.|+. ...|||||
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~--gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT 522 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK--GISSQSLHGNREQSDREMALEDFKSGEVRILVAT 522 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc--ccchhhccCChhhhhHHHHHHhhhcCceEEEEEe
Confidence 4456789999999998875 679999999999999999988754 9999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 139 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~ 139 (454)
|+++||||+ |+|+||+|||+|.+++.|+||||||||+|+.|.++.|++..+-.+...|.
T Consensus 523 DlaSRGlDv-~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 523 DLASRGLDV-PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred chhhcCCCc-hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999998877666553
No 27
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=3.5e-23 Score=226.20 Aligned_cols=133 Identities=21% Similarity=0.361 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaR 84 (454)
..++..|+.++..+.+.++||||+|++.|+.++..|+.. |+.+..+||+|++.+|..+++.|.. ...|||||++++|
T Consensus 221 ~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~ 298 (607)
T PRK11057 221 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGM 298 (607)
T ss_pred cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhc
Confidence 456677888888888899999999999999999999986 9999999999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 85 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
|||+ |+|++|||||+|.++++|+||+|||||.|..|.|++|+.+.+..+++.+...
T Consensus 299 GIDi-p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 299 GINK-PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred cCCC-CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999998877777654
No 28
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=218.51 Aligned_cols=133 Identities=30% Similarity=0.483 Sum_probs=119.8
Q ss_pred cCcchHHHHHHHHHHhcC----CC-----cEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C
Q 012877 3 VPLEQKLDMLWSFIKAHL----NS-----KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 72 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~----~~-----KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~ 72 (454)
|...+|...|+.+|.... .. +++|||.|.+.+.++..+|... ++++..+||..+|.+|.+++..|+. .
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC--CCCceeecchhhhhHHHHHHHHhhcCC
Confidence 455678888898887433 23 8999999999999999999986 9999999999999999999999999 9
Q ss_pred CcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 73 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 73 ~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
..|||||+|++||||| |+|++|||||+|.+..+|+||||||||.|+.|.++.|+......+.+.|
T Consensus 388 ~pvlVaT~VaaRGlDi-~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 388 APVLVATNVAARGLDI-PNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred cceEEEehhhhcCCCC-CCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 9999999999999999 9999999999999999999999999999999999999995554444443
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=1.1e-22 Score=229.78 Aligned_cols=130 Identities=18% Similarity=0.315 Sum_probs=119.8
Q ss_pred HHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccc
Q 012877 9 LDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 86 (454)
Q Consensus 9 l~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGL 86 (454)
+..|..+|..+ .+..+||||+|++.|+.++..|+.. |+.+..+||+|++.+|..++++|.. ...|||||++++|||
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGI 744 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGI 744 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCC
Confidence 46677787654 3678999999999999999999986 9999999999999999999999999 999999999999999
Q ss_pred ccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 87 DFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 87 D~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
|+ |+|++|||||+|.+++.|+||+|||||.|..|.|++|+.+.+...++.+...
T Consensus 745 Dk-PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 745 NK-PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred Cc-cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhc
Confidence 99 9999999999999999999999999999999999999999988777766654
No 30
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=9.8e-23 Score=211.11 Aligned_cols=140 Identities=24% Similarity=0.422 Sum_probs=126.5
Q ss_pred CccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEE
Q 012877 1 MIVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 77 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLV 77 (454)
|+|....|.-.++.+|......++|+|++|..++..++..|.-.+ +.+.+-++.|++++..|...+..|.. ..+|||
T Consensus 409 vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 409 VVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred eecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 466777889999999999999999999999999999999887222 36778889999999999999999999 999999
Q ss_pred eccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH-HHHHHHHHc
Q 012877 78 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLREA 141 (454)
Q Consensus 78 aTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~-~~l~~L~~~ 141 (454)
|||+++||||+ .+|+.|||||+|.+..+||||+|||||+|+.|.|+.++...+. .|.+.|...
T Consensus 489 cSD~laRGiDv-~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 489 CSDALARGIDV-NDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred ehhhhhcCCcc-cccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 99999999999 9999999999999999999999999999999999999999988 555555554
No 31
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=3.1e-22 Score=217.85 Aligned_cols=137 Identities=21% Similarity=0.375 Sum_probs=127.4
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
+...+...|..+|..+.+.++||||+|++.|+.+++.|... |+++..+||+|++.+|..+++.|.. ...|||||+++
T Consensus 207 ~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~ 284 (591)
T TIGR01389 207 KKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAF 284 (591)
T ss_pred eCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechh
Confidence 34567888999998888889999999999999999999876 9999999999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcCC
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKI 143 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~i 143 (454)
++|||+ |+|++||||++|.+++.|+||+|||||.|..|.|++|+.+.+...++.+.....
T Consensus 285 ~~GID~-p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 285 GMGIDK-PNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSE 344 (591)
T ss_pred hccCcC-CCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccC
Confidence 999999 999999999999999999999999999999999999999999888887766543
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=2.4e-22 Score=223.93 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC----C--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR----P--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~----~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
++..+|..++.. +.++||||+|++.++.++..|+... + +..+..+||++++.+|..++++|++ +..+||||
T Consensus 259 ~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaT 336 (742)
T TIGR03817 259 EAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATT 336 (742)
T ss_pred HHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 567777777764 5789999999999999999887642 1 4678899999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeC--cchHHHHHHHHHc-CCCcccccccccccc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT--PTEMKMLEKLREA-KIPIHFTKANTKRLQ 156 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~--p~E~~~l~~L~~~-~i~i~~~~i~~~k~~ 156 (454)
|+++||||| |+|++|||||+|.++.+|+||+|||||.|+.|.+++++. |.+..++..++.. +.+++...+++....
T Consensus 337 d~lerGIDI-~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~n~~ 415 (742)
T TIGR03817 337 NALELGVDI-SGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFDPDNPY 415 (742)
T ss_pred chHhccCCc-ccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeCCCcHH
Confidence 999999999 999999999999999999999999999999999999986 5566667766543 667777666665555
Q ss_pred hHHHHHHHHHhhC
Q 012877 157 PVSGLLAALLVKY 169 (454)
Q Consensus 157 ~i~~~l~~ll~~~ 169 (454)
.+..++...+.+.
T Consensus 416 il~~hl~~aa~e~ 428 (742)
T TIGR03817 416 VLGPHLCCAAAEL 428 (742)
T ss_pred HHHHHHHHHHhcC
Confidence 6667776666543
No 33
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=3.4e-22 Score=210.60 Aligned_cols=134 Identities=31% Similarity=0.545 Sum_probs=125.3
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
....|+-.|..++..-...++|||+-+..++..|++.|. .++++.+.++||..+|.+|.+++++|+. +..|||||+++
T Consensus 370 se~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll 448 (593)
T KOG0344|consen 370 SEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLL 448 (593)
T ss_pred cchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhh
Confidence 446688899999998888999999999999999999996 4579999999999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHH
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 139 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~ 139 (454)
+||||| .+|++|||||+|.+.-.||||+|||||+|+.|.||+|++..+..+++.+.
T Consensus 449 ~RGiDf-~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 449 ARGIDF-KGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred hccccc-cCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 999999 99999999999999999999999999999999999999998877776553
No 34
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.87 E-value=5.1e-22 Score=203.31 Aligned_cols=135 Identities=33% Similarity=0.508 Sum_probs=122.3
Q ss_pred CccCcchHHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 1 MIVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 1 ivv~~~~Kl~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
|.|...+|+.+|+.+++-. ..+|+|||+||...+-.+--.|... |++...|.|.|+...|..|+++|+. -++|+||
T Consensus 247 v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~YdivIA 324 (569)
T KOG0346|consen 247 VKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGLYDIVIA 324 (569)
T ss_pred EEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcceeEEEE
Confidence 4678899999999999854 4789999999999998888778776 9999999999999999999999999 9999999
Q ss_pred ccc-----------------------------------cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceE
Q 012877 79 TDV-----------------------------------ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 123 (454)
Q Consensus 79 TDv-----------------------------------aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a 123 (454)
||. ++||||| ..|.+|||||+|.++..||||+|||||++++|.+
T Consensus 325 tD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF-~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta 403 (569)
T KOG0346|consen 325 TDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDF-HHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA 403 (569)
T ss_pred ccCccchhhhhccccccccccCCCCccccccccCchhchhccccc-hheeeeeecCCCCchHHHHHhccccccCCCCCce
Confidence 991 4699999 9999999999999999999999999999999999
Q ss_pred EEEeCcchHHHHHHH
Q 012877 124 VLFLTPTEMKMLEKL 138 (454)
Q Consensus 124 il~l~p~E~~~l~~L 138 (454)
+.|+.|.|..-...|
T Consensus 404 lSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 404 LSFVSPKEEFGKESL 418 (569)
T ss_pred EEEecchHHhhhhHH
Confidence 999999998533333
No 35
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.87 E-value=3e-22 Score=202.38 Aligned_cols=131 Identities=30% Similarity=0.508 Sum_probs=116.4
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
..+.|+-.|+.-|.+. ..++||||.....|+.++++|-- .|+.++.+||+-.|++|...++.|+. +..||||||||
T Consensus 405 kqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLl--KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVA 481 (610)
T KOG0341|consen 405 KQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLL--KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVA 481 (610)
T ss_pred HhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHH--ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecch
Confidence 4466777777777543 45799999999999999999854 49999999999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH-HHHHHH
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKL 138 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~-~~l~~L 138 (454)
+.|||| |+|.+|||||+|.+++.|+||+|||||.|+.|.+..|++.... ..|-.|
T Consensus 482 SKGLDF-p~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 482 SKGLDF-PDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDL 537 (610)
T ss_pred hccCCC-ccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHH
Confidence 999999 9999999999999999999999999999999999999997644 444333
No 36
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.3e-22 Score=199.72 Aligned_cols=143 Identities=27% Similarity=0.514 Sum_probs=133.3
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
..++|+++|+.|.+ .-...+|||||...|..+...|... ++.+.++||.|.|.+|..++..|+. .+.|||+|+++
T Consensus 248 ~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~--~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~ 323 (397)
T KOG0327|consen 248 EKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH--GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLL 323 (397)
T ss_pred cccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC--CceEEEeecccchhhhhHHHHHhhcCCceEEeecccc
Confidence 34559999999998 5567899999999999999999665 9999999999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
+||||+ ..+..|||||+|.+..+|+||+||+||.|++|.++.|++..+...++.+++. +.+|.+++.+
T Consensus 324 argidv-~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 324 ARGIDV-QQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred ccccch-hhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999 9999999999999999999999999999999999999999999999999887 8998887654
No 37
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=5.5e-21 Score=216.22 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=129.4
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C--CcEEEecccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTDVA 82 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~--~~VLVaTDva 82 (454)
..|+..|..+|+.+.+.|+||||+++..+..+.+.|+.. .|+.+..+||+|++.+|..+++.|+. . ..|||||+++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~-~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc-cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 468999999999988999999999999999999999643 38999999999999999999999997 4 7899999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH---HHHHHHHHcCCCcccccccc--cccch
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM---KMLEKLREAKIPIHFTKANT--KRLQP 157 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~---~~l~~L~~~~i~i~~~~i~~--~k~~~ 157 (454)
++|+|| +.+++|||||+|+++..|+||+||++|+|+.|.+.+++...+. ..+..+...++.+-+..++. .....
T Consensus 557 seGlNl-q~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~ 635 (956)
T PRK04914 557 SEGRNF-QFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDE 635 (956)
T ss_pred ccCCCc-ccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHH
Confidence 999999 9999999999999999999999999999999987666654332 44444444555554444432 22233
Q ss_pred HHHHHHHHHh
Q 012877 158 VSGLLAALLV 167 (454)
Q Consensus 158 i~~~l~~ll~ 167 (454)
....+...+.
T Consensus 636 ~~~~l~~~l~ 645 (956)
T PRK04914 636 FGDELIPYLA 645 (956)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=209.63 Aligned_cols=136 Identities=28% Similarity=0.461 Sum_probs=125.3
Q ss_pred ccC-cchHHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 2 IVP-LEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 2 vv~-~~~Kl~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
||+ ..+|+..|..+|... ...++||||.++..|..+...|.+. |+++..|||+.+|..|..+++.|++ .+.+|||
T Consensus 592 V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 592 VCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred EecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhccCceEEEe
Confidence 567 788999999999754 4789999999999999999999976 9999999999999999999999999 9999999
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
|++++||||+ +.+.+|||||||.....|+||+|||||+|+.|.|++|++|.+..+...|..
T Consensus 670 TsvvarGLdv-~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~ 730 (997)
T KOG0334|consen 670 TSVVARGLDV-KELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCK 730 (997)
T ss_pred hhhhhccccc-ccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999977665555433
No 39
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.9e-20 Score=204.07 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=112.8
Q ss_pred ccCcchHHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 2 IVPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
.++..+|...|..++.... +.++||||+|+..++.++..|... |+++..|||+++ +|...+..|.. ...||||
T Consensus 452 ~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVA 527 (656)
T PRK12898 452 FLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRGRITVA 527 (656)
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEE
Confidence 3566789999999997643 678999999999999999999987 999999999865 55566667777 7789999
Q ss_pred ccccccccccCC---Ccc-----EEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHH
Q 012877 79 TDVASRGLDFNK---AVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 134 (454)
Q Consensus 79 TDvaaRGLD~~p---~Vd-----~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~ 134 (454)
||+|+||+|| + +|. +|||||+|.+...|+||+|||||.|.+|.+++|++..+.-+
T Consensus 528 TdmAgRGtDI-~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 528 TNMAGRGTDI-KLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred ccchhcccCc-CCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 9999999999 7 676 99999999999999999999999999999999999877543
No 40
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.4e-20 Score=197.14 Aligned_cols=124 Identities=22% Similarity=0.380 Sum_probs=116.7
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEE
Q 012877 18 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVV 96 (454)
Q Consensus 18 ~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VI 96 (454)
.+.....||||.|++.|+.+++.|+.. |+.+..+||+|+..+|..+.++|.. +..|+|||.++++|||. |+|.|||
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK-pdVRfVi 303 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK-PDVRFVI 303 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC-CCceEEE
Confidence 455677999999999999999999987 9999999999999999999999999 99999999999999999 9999999
Q ss_pred ecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcCCC
Q 012877 97 QVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIP 144 (454)
Q Consensus 97 q~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~i~ 144 (454)
|||+|.+++.|+|-+||+||.|....|++|+.|.+..+.+.+....-+
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999888887665443
No 41
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=7.3e-20 Score=203.19 Aligned_cols=128 Identities=22% Similarity=0.259 Sum_probs=114.1
Q ss_pred ccCcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEec
Q 012877 2 IVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 79 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaT 79 (454)
.+...+|...|...+.. ..+.++||||+|+..++.++..|... |+++..|||.+++.++..+...+. ...|+|||
T Consensus 407 ~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~--gi~~~~L~~~~~~~e~~~i~~ag~-~g~VlIAT 483 (790)
T PRK09200 407 FVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA--GIPHNLLNAKNAAKEAQIIAEAGQ-KGAVTVAT 483 (790)
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCccHHHHHHHHHcCC-CCeEEEEc
Confidence 45667899999998865 35789999999999999999999987 999999999999888776665554 45799999
Q ss_pred cccccccccC--CCcc-----EEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 80 DVASRGLDFN--KAVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 80 DvaaRGLD~~--p~Vd-----~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|+|+||+||+ |+|. +||+|++|.+...|+||+|||||.|.+|.+++|++..+.
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999994 4898 999999999999999999999999999999999998765
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.81 E-value=3.9e-19 Score=201.61 Aligned_cols=154 Identities=16% Similarity=0.298 Sum_probs=118.5
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC----CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG 85 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~----gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRG 85 (454)
.|..++.. +.++||||||+..++.++..|....+ +..+.++||+|++.+|..+.+.|++ ...|||||+++++|
T Consensus 276 ~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~G 353 (876)
T PRK13767 276 TLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELG 353 (876)
T ss_pred HHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhc
Confidence 34444433 46899999999999999999987543 4689999999999999999999999 99999999999999
Q ss_pred cccCCCccEEEecCCCCChhHHHHHHhccccC-CCCceEEEEeCcc-hH-H---HHHHHHHcCCCcccccccccccchHH
Q 012877 86 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARY-NSGGRSVLFLTPT-EM-K---MLEKLREAKIPIHFTKANTKRLQPVS 159 (454)
Q Consensus 86 LD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~-g~~G~ail~l~p~-E~-~---~l~~L~~~~i~i~~~~i~~~k~~~i~ 159 (454)
||| |+|++||||++|.++.+|+||+|||||. |..+.++++.... +. . +++... ...++.+.++......+.
T Consensus 354 IDi-p~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~--~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 354 IDI-GYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAR--EGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred CCC-CCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHH--hCCCCCCCCCCCcHHHHH
Confidence 999 9999999999999999999999999986 4445555555433 32 1 222222 333445555555555677
Q ss_pred HHHHHHHhhC
Q 012877 160 GLLAALLVKY 169 (454)
Q Consensus 160 ~~l~~ll~~~ 169 (454)
+++.+++...
T Consensus 431 q~i~~~~~~~ 440 (876)
T PRK13767 431 QHIVGMAIER 440 (876)
T ss_pred HHHHHHHHcC
Confidence 7777776653
No 43
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=4.7e-20 Score=188.23 Aligned_cols=207 Identities=27% Similarity=0.344 Sum_probs=162.4
Q ss_pred cCcchHHHHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 3 VPLEQKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~-~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
|+..+|...|+.++.... ..++||||+|...|+++..+|+.. |+.+..++|.|.+..|...+.+|+. +..+||.||
T Consensus 242 ~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTd 319 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTD 319 (529)
T ss_pred eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccceEEEeh
Confidence 577899999999997765 357999999999999999999987 9999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccc---------
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA--------- 150 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i--------- 150 (454)
+++||+|| |..+.|||||+|.+...|+|||||++|+|+.|.++.|+.+.+..++-.|... +-|+.....
T Consensus 320 vaaRG~di-plldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~~~t 398 (529)
T KOG0337|consen 320 VAARGLDI-PLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDCDDT 398 (529)
T ss_pred hhhccCCC-ccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhccccc
Confidence 99999999 9999999999999999999999999999999999999999999888888776 434322111
Q ss_pred ------cccccchHHHHHHHHHhhChhHHHH---HHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcc
Q 012877 151 ------NTKRLQPVSGLLAALLVKYPDMQHR---AQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 217 (454)
Q Consensus 151 ------~~~k~~~i~~~l~~ll~~~~el~~~---aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~ 217 (454)
++.....+....++++..+.++..+ |-+|+.-|.|+-.......+=.+++ +-.+=||+..++
T Consensus 399 ~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke-----~~~~~g~~~~~~ 469 (529)
T KOG0337|consen 399 TVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKE-----MISSKGLHPRFK 469 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHh-----hhcccCCCcccc
Confidence 1111222334556666666665554 5566777888766554444433333 333336665444
No 44
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.80 E-value=1.1e-19 Score=192.78 Aligned_cols=124 Identities=28% Similarity=0.472 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaR 84 (454)
+.|+..|-.+++..+..+.||||+....++-++.+|..- |+++.++.|.|+|.+|+.++..++. ...|||+||+.+|
T Consensus 257 rlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaR 334 (980)
T KOG4284|consen 257 RLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhc
Confidence 459999999999999999999999999999999999875 9999999999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 85 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|||- ++|++|||.|+|.+-.+|.|||||+||.|..|.++.|++..++
T Consensus 335 GIDa-~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 335 GIDA-DNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cCCc-cccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999 9999999999999999999999999999999999999998765
No 45
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=1.2e-18 Score=150.27 Aligned_cols=117 Identities=35% Similarity=0.573 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 7 QKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
.|+..+..++..+. +.++||||++...++.++..|... +.++..+||+++...|..++..|.. ...|||+|.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 68999999998775 789999999999999999999874 8899999999999999999999999 889999999999
Q ss_pred cccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEE
Q 012877 84 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 126 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~ 126 (454)
+|+|+ |.+++||.+++|++...|+|++||++|.|+.|.++++
T Consensus 90 ~G~d~-~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDL-PNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcCh-hhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999 9999999999999999999999999999999888764
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.79 E-value=1.1e-18 Score=193.26 Aligned_cols=177 Identities=21% Similarity=0.252 Sum_probs=131.3
Q ss_pred HHHHHHHHHh--cCCCcEEEEeCC--------hHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEE
Q 012877 9 LDMLWSFIKA--HLNSKILVFLTS--------CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 77 (454)
Q Consensus 9 l~~L~~~Lk~--~~~~KiIVF~sS--------~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLV 77 (454)
...++.++.. ..+.+++|||++ +..+..+++.|...++++.+..+||+|++.+|..++++|++ +..|||
T Consensus 457 ~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 536 (681)
T PRK10917 457 RDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILV 536 (681)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 3445555543 246799999984 55677888899887778899999999999999999999999 999999
Q ss_pred eccccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCCCceEEEEeC-c---chHHHHHHHHHc--CCCcccccc
Q 012877 78 CTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLT-P---TEMKMLEKLREA--KIPIHFTKA 150 (454)
Q Consensus 78 aTDvaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~~G~ail~l~-p---~E~~~l~~L~~~--~i~i~~~~i 150 (454)
||+++++|||+ |++++||+|++|. ..+.|+||+|||||.|..|.|++++. + .....+..+... ++.|.+..+
T Consensus 537 aT~vie~GiDi-p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl 615 (681)
T PRK10917 537 ATTVIEVGVDV-PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDL 615 (681)
T ss_pred ECcceeeCccc-CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhH
Confidence 99999999999 9999999999997 57888899999999999999999995 4 223556666553 555444433
Q ss_pred cccccchH----HH-----HHHHHHhhChhHHHHHHHHHHHHHHHh
Q 012877 151 NTKRLQPV----SG-----LLAALLVKYPDMQHRAQKAFITYLRSV 187 (454)
Q Consensus 151 ~~~k~~~i----~~-----~l~~ll~~~~el~~~aqrAf~sylrs~ 187 (454)
.....-.+ +. .+.. +..|.++...|..+...++...
T Consensus 616 ~~rg~g~~~g~~q~g~~~~~~~~-~~~d~~l~~~a~~~a~~~~~~~ 660 (681)
T PRK10917 616 ELRGPGELLGTRQSGLPEFKVAD-LVRDEELLEEARKDARELLERD 660 (681)
T ss_pred hhCCCccccCceecCCCCeeEee-HhhhHHHHHHHHHHHHHHHHhC
Confidence 21100000 00 1111 2246677777777777777653
No 47
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=5.4e-19 Score=183.69 Aligned_cols=134 Identities=29% Similarity=0.473 Sum_probs=119.0
Q ss_pred ccC-cchHHHHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 2 IVP-LEQKLDMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 2 vv~-~~~Kl~~L~~~Lk~-~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
||+ ...|++.|+.-|-. ..-+++|||+.-...++.+...|.-. ++.+..+||.|.|.+|.+++.+|+. .+.|||+
T Consensus 447 V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk--~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlva 524 (731)
T KOG0339|consen 447 VCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK--GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVA 524 (731)
T ss_pred eccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc--cceeeeecCchhhHHHHHHHHHHhhcCCceEEE
Confidence 344 45688888765544 33579999999999999999999754 9999999999999999999999999 8999999
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
|||++||+|| |.+..|||||+-.++++|.||+|||||+|..|.++.++++.+..|.-.|
T Consensus 525 tDvaargldI-~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 525 TDVAARGLDI-PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred eeHhhcCCCc-cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 9999999999 8999999999999999999999999999999999999999987654433
No 48
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.78 E-value=2.3e-18 Score=189.50 Aligned_cols=134 Identities=25% Similarity=0.355 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
+...++..|+..|+.. .+.++||||+|+..++.+++.|... |+++..+||++++.+|..++..|+. ...|||||+
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred eccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 3456778888888653 4678999999999999999999987 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecC-----CCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 81 VASRGLDFNKAVDWVVQVD-----CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D-----~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
+++||+|+ |.|++||++| .|.+..+||||+|||||. ..|.+++|+...+..+...|...
T Consensus 501 ~L~rGfDi-P~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDL-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeee-CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999 9999999999 799999999999999998 68999999998887777777654
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.78 E-value=1.4e-18 Score=196.95 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=104.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEec
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
.+++++|||+++..++.+++.|..+.|++.+..+||+|++.+|..++.+|++ +..|||||+++++|||| |+|++||++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI-p~v~~VIi~ 737 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI-PNANTIIIE 737 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc-ccCCEEEEe
Confidence 3678999999999999999999998889999999999999999999999999 99999999999999999 999999999
Q ss_pred CCCC-ChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 99 DCPE-DVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 99 D~P~-~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
++|. +..+|+||+|||||.|+.|.|++++.+.
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9975 6889999999999999999999998653
No 50
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.77 E-value=1.6e-18 Score=191.41 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=111.8
Q ss_pred ccCcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEec
Q 012877 2 IVPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT 79 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaT 79 (454)
.+...+|+..+...++. ..+.++||||+|+..++.+...|.+. |+++..|||++++.+|..+...|+ ...|+|||
T Consensus 403 ~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~-~g~VlIAT 479 (762)
T TIGR03714 403 YATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQ-KGAVTVAT 479 (762)
T ss_pred EECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCC-CCeEEEEc
Confidence 34567899999998876 34789999999999999999999987 999999999999988766655443 45799999
Q ss_pred cccccccccCC---------CccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHH
Q 012877 80 DVASRGLDFNK---------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 133 (454)
Q Consensus 80 DvaaRGLD~~p---------~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~ 133 (454)
|+|+||+|| + ++++||+|++|..... +||+|||||.|.+|.+++|+++.+.-
T Consensus 480 dmAgRGtDI-~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 480 SMAGRGTDI-KLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred cccccccCC-CCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 999999999 8 8999999999998766 99999999999999999999987653
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.77 E-value=5.3e-18 Score=198.04 Aligned_cols=147 Identities=17% Similarity=0.203 Sum_probs=116.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC-------------------------------CCceEeecCCCCHHHHHHHHHHH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP-------------------------------GIPLMCLYGRMKQDRRMAIYAQF 69 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~-------------------------------gi~v~~LHG~msq~~R~~il~~F 69 (454)
..++||||||+..|+.++..|+...+ .+.+.++||+|++++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 57899999999999999999976421 12267899999999999999999
Q ss_pred hc-CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccC-CCCceEEEEeCcchHHHHHH---HHHc-CC
Q 012877 70 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY-NSGGRSVLFLTPTEMKMLEK---LREA-KI 143 (454)
Q Consensus 70 ~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~-g~~G~ail~l~p~E~~~l~~---L~~~-~i 143 (454)
++ ...|||||+++++|||| ++|++||||++|.++.+|+||+|||||. |..+.++++.... ..++.. ++.. .-
T Consensus 324 K~G~LrvLVATssLELGIDI-g~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r-~dlle~~~~ve~~l~g 401 (1490)
T PRK09751 324 KSGELRCVVATSSLELGIDM-GAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTR-RDLVDSAVIVECMFAG 401 (1490)
T ss_pred HhCCceEEEeCcHHHccCCc-ccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcH-HHHHhhHHHHHHHhcC
Confidence 99 99999999999999999 9999999999999999999999999986 3344555433322 233331 2222 55
Q ss_pred CcccccccccccchHHHHHHHHHhhC
Q 012877 144 PIHFTKANTKRLQPVSGLLAALLVKY 169 (454)
Q Consensus 144 ~i~~~~i~~~k~~~i~~~l~~ll~~~ 169 (454)
.++.+.++.+.+..+.++|.+++...
T Consensus 402 ~iE~~~~p~nplDVLaqqiva~a~~~ 427 (1490)
T PRK09751 402 RLENLTPPHNPLDVLAQQTVAAAAMD 427 (1490)
T ss_pred CCCccCCCCChHHHHHHHHHHHHhcC
Confidence 56667777777777888888888754
No 52
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=2.7e-18 Score=174.91 Aligned_cols=118 Identities=19% Similarity=0.354 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHH----HHHHHhc-CCcEEEecc
Q 012877 7 QKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA----IYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~----il~~F~~-~~~VLVaTD 80 (454)
.+...+..++... .+.++||||+|++.++.++..|....+...+..+||+|++.+|.. +++.|++ ...|||||+
T Consensus 207 ~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 207 GEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred cCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 4566677777543 468999999999999999999988744556999999999999976 4899999 899999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCc----eEEEEeC
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG----RSVLFLT 128 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G----~ail~l~ 128 (454)
+++||||| + +++||++.+| +++|+||+||+||.|+.+ ..++|..
T Consensus 287 ~~~~GiDi-~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 287 VIEASLDI-S-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred chhceecc-C-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 99999999 6 8999999887 789999999999998642 5555544
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.76 E-value=8.4e-18 Score=184.74 Aligned_cols=117 Identities=25% Similarity=0.365 Sum_probs=104.7
Q ss_pred HHHHHHHHhc--CCCcEEEEeCCh--------HHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 10 DMLWSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 10 ~~L~~~Lk~~--~~~KiIVF~sS~--------k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
..++.++... .+.+++|||+++ ..+..+++.|...++++.+..+||+|++.+|..++++|++ +..||||
T Consensus 435 ~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 435 DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 5566666553 467899999875 5677888888877788999999999999999999999999 9999999
Q ss_pred ccccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCCCceEEEEe
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFL 127 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~~G~ail~l 127 (454)
|+++++|||+ |++++||+|++|. +.+.|+||+||+||.|..|.|++++
T Consensus 515 T~vie~GvDi-P~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 515 TTVIEVGVDV-PNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CceeecCccc-CCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999 9999999999997 6888899999999999999999999
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.75 E-value=7.7e-18 Score=185.42 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=97.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHH-hc-CCcEEEeccccccccccCCCccEEEec
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF-CE-KRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F-~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
++.+||||+++..++.+++.|....+++.+..|||+|++. .+++.+| ++ +..||||||+|+||||| |+|++||++
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDI-p~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTI-RNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccc-cCeeEEEEC
Confidence 5689999999999999999998876679999999999984 5677888 56 88999999999999999 999999999
Q ss_pred C---CCC---------ChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 99 D---CPE---------DVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 99 D---~P~---------~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
| .|. +.++|+||+|||||. +.|.|+.|+++.+.
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9 675 888999999999999 89999999998764
No 55
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.75 E-value=1.3e-17 Score=183.94 Aligned_cols=127 Identities=24% Similarity=0.321 Sum_probs=112.8
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
...++..|+..|+.. .+.++||||+|...++.+...|... |+++..+||++++.+|..++..|+. ...|||||++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 445677777777653 4678999999999999999999987 9999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCC-----CCChhHHHHHHhccccCCCCceEEEEeCcchHHHH
Q 012877 82 ASRGLDFNKAVDWVVQVDC-----PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKML 135 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~-----P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l 135 (454)
+++|+|+ |.+++||++|. |.+..+|+||+|||||. ..|.+++|++..+..|.
T Consensus 506 L~rGfdl-p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~ 562 (652)
T PRK05298 506 LREGLDI-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQ 562 (652)
T ss_pred HhCCccc-cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHH
Confidence 9999999 99999999885 78999999999999996 78999999996433333
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.75 E-value=9.4e-18 Score=193.90 Aligned_cols=108 Identities=16% Similarity=0.278 Sum_probs=99.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD 99 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D 99 (454)
+++++||||++..++.+++.|.+..|++.+.++||+|++.+|..++.+|++ +..|||||++++||||| |+|++||..+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI-P~v~~VIi~~ 887 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI-PTANTIIIER 887 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc-ccCCEEEEec
Confidence 578999999999999999999998899999999999999999999999999 99999999999999999 9999999544
Q ss_pred CC-CChhHHHHHHhccccCCCCceEEEEeCc
Q 012877 100 CP-EDVASYIHRVGRTARYNSGGRSVLFLTP 129 (454)
Q Consensus 100 ~P-~~~~~YIhRvGRtgR~g~~G~ail~l~p 129 (454)
.. .+..+|+||+|||||.|+.|.|++++.+
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 32 3566799999999999999999998854
No 57
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.8e-17 Score=172.98 Aligned_cols=124 Identities=28% Similarity=0.382 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecC--------CCCHHHHHHHHHHHhc-C
Q 012877 6 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG--------RMKQDRRMAIYAQFCE-K 72 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG--------~msq~~R~~il~~F~~-~ 72 (454)
+-|+..|..+++. +.+.++|||++.+.+++.+...|....+.+. ..+-| ||+|.++.+++++|++ .
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 4578887777764 4578999999999999999999999744333 13334 6999999999999999 9
Q ss_pred CcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 73 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 73 ~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
++|||||+|+++|||| |.||+||.|++-.|+-.+|||.|||||. +.|.++++++....
T Consensus 426 ~nVLVaTSVgEEGLDI-p~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 426 YNVLVATSVGEEGLDI-PEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred ceEEEEcccccccCCC-CcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 9999999999999999 9999999999999999999999999998 89999999988743
No 58
>PRK13766 Hef nuclease; Provisional
Probab=99.74 E-value=1.7e-17 Score=185.75 Aligned_cols=123 Identities=29% Similarity=0.434 Sum_probs=111.7
Q ss_pred CcchHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCC--------CCHHHHHHHHHHHhc
Q 012877 4 PLEQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR--------MKQDRRMAIYAQFCE 71 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~--------msq~~R~~il~~F~~ 71 (454)
....|+..|..+|+. ..+.++||||+++.++..+++.|... |+.+..+||. |++.+|..++.+|+.
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 421 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE--GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA 421 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--CCceEEEEccccccccCCCCHHHHHHHHHHHHc
Confidence 345689999999876 46789999999999999999999775 8899999986 999999999999999
Q ss_pred -CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 72 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 72 -~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
...|||||+++++|+|+ |.+++||+||+|+++..|+||+||+||.|. |.+++++...
T Consensus 422 g~~~vLvaT~~~~eGldi-~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 422 GEFNVLVSTSVAEEGLDI-PSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred CCCCEEEECChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 99999999999999999 999999999999999999999999999875 7888887754
No 59
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=1.1e-17 Score=134.09 Aligned_cols=76 Identities=32% Similarity=0.517 Sum_probs=72.2
Q ss_pred HHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCC
Q 012877 40 AFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN 118 (454)
Q Consensus 40 ~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g 118 (454)
.|+.. ++.+..+||++++.+|..+++.|+. ...|||||+++++|||+ |.+++||+|++|+++..|+|++||++|.|
T Consensus 2 ~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~-~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKK--GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDL-PDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHT--TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTS-TTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHC--CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccc-cccccccccccCCCHHHHHHHhhcCCCCC
Confidence 35554 9999999999999999999999999 89999999999999999 99999999999999999999999999986
No 60
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.73 E-value=2.9e-17 Score=180.65 Aligned_cols=126 Identities=26% Similarity=0.272 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
...+|+..+...+.. ..+.++||||+|...++.+...|... |++...|||+ +..|...+-.|.. ...|+||||
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~--gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATn 461 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER--GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATN 461 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEec
Confidence 345788888776633 35789999999999999999999987 9999999999 8899999999999 999999999
Q ss_pred ccccccccCCC-------ccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHH
Q 012877 81 VASRGLDFNKA-------VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 134 (454)
Q Consensus 81 vaaRGLD~~p~-------Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~ 134 (454)
+|+||+|| +. .-+||++++|.+...|.||+|||||.|.+|.+.+|++..+.-+
T Consensus 462 mAgRGtDI-~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 462 MAGRGTDI-KLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred cccCCcCC-CccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 99999999 76 5599999999999999999999999999999999999887643
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.72 E-value=2.3e-17 Score=185.32 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccccc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 88 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~ 88 (454)
.|..++.. ..+.+||||+++..++.++..|.... +++.++.|||+|++.+|..++..|.+ ...|||||||+++||||
T Consensus 200 ~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItI 278 (819)
T TIGR01970 200 AVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTI 278 (819)
T ss_pred HHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccc
Confidence 34455543 35789999999999999999998733 47899999999999999999999999 89999999999999999
Q ss_pred CCCccEEEecCCCCC------------------hhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 89 NKAVDWVVQVDCPED------------------VASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 89 ~p~Vd~VIq~D~P~~------------------~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|+|++||++++|.. -++|+||+|||||. +.|.|+.|++..+.
T Consensus 279 -p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 279 -EGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred -cCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 99999999999863 24589999999999 89999999987654
No 62
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=4.8e-17 Score=180.22 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=111.1
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
+...|+..|...+... .+.++||||+|+..++.++..|.+. |++...|||++.+.++..+...++. ..|+|||++
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~-g~VtIATnm 497 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQR-GAVTIATNM 497 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCC-ceEEEEecc
Confidence 4567999999988543 6889999999999999999999987 9999999999987666666655554 459999999
Q ss_pred cccccccC--CCcc-----EEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 82 ASRGLDFN--KAVD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 82 aaRGLD~~--p~Vd-----~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|+||+||+ ++|. |||++++|.+...|.||+|||||.|.+|.+.+|++..+.
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 99999993 3789 999999999999999999999999999999999998865
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.70 E-value=6.1e-17 Score=180.54 Aligned_cols=116 Identities=25% Similarity=0.368 Sum_probs=94.1
Q ss_pred chHHHHHHHHHH---hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHH-----HHHHHHhc------
Q 012877 6 EQKLDMLWSFIK---AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM-----AIYAQFCE------ 71 (454)
Q Consensus 6 ~~Kl~~L~~~Lk---~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~-----~il~~F~~------ 71 (454)
..|+..++..+. ...+.++||||||+..++.+++.|... ++ ..|||+|+|.+|. .++++|+.
T Consensus 254 e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~--g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~ 329 (844)
T TIGR02621 254 EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE--KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGS 329 (844)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc--CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccc
Confidence 445544443321 234678999999999999999999875 55 8999999999999 88999975
Q ss_pred ------CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCC-ceEEEEeCc
Q 012877 72 ------KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLTP 129 (454)
Q Consensus 72 ------~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~-G~ail~l~p 129 (454)
...|||||+|++||||| +. ++||++.+| +++||||+|||||+|+. |.++.++++
T Consensus 330 ~~~~~~g~~ILVATdVaerGLDI-d~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 330 RARPQQGTVYLVCTSAGEVGVNI-SA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccccccceEEeccchhhhcccC-Cc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 14699999999999999 75 899998877 58999999999999985 444666654
No 64
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=6.5e-17 Score=180.80 Aligned_cols=125 Identities=21% Similarity=0.197 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
...+|+..|...|... .+.++||||+|+..++.++..|... |++...||+ .|.+|...+-.|.. ...|+||||
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 3467999999999654 5789999999999999999999987 999999998 68899999999999 999999999
Q ss_pred ccccccccCC---CccE-----EEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHH
Q 012877 81 VASRGLDFNK---AVDW-----VVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMK 133 (454)
Q Consensus 81 vaaRGLD~~p---~Vd~-----VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~ 133 (454)
+|+||+|| + .|.+ ||+++.|.+...|+||+|||||.|.+|.+++|++..+.-
T Consensus 655 MAGRGtDI-kl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 655 MAGRGTDI-KLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CcCCCCCc-CCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999 7 5654 499999999999999999999999999999999988764
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.70 E-value=5.1e-17 Score=182.62 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhc-CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccccc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL-RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 88 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l-~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~ 88 (454)
.|..++.. ..+.+||||++...++.+++.|... ..++.+..|||+|++.+|..++..|.+ ...|||||||+++||||
T Consensus 203 ~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtI 281 (812)
T PRK11664 203 ATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTI 281 (812)
T ss_pred HHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccc
Confidence 34444433 3678999999999999999999873 247899999999999999999999999 89999999999999999
Q ss_pred CCCccEEEecCCCCC------------------hhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 89 NKAVDWVVQVDCPED------------------VASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 89 ~p~Vd~VIq~D~P~~------------------~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|+|++||++++|.. -++|+||+|||||. ..|.|+.+++..+.
T Consensus 282 -p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 282 -EGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred -cCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 99999999887753 35799999999999 69999999987654
No 66
>PRK02362 ski2-like helicase; Provisional
Probab=99.68 E-value=6.4e-16 Score=172.68 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC----------------------------------CCceEeec
Q 012877 9 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP----------------------------------GIPLMCLY 54 (454)
Q Consensus 9 l~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~----------------------------------gi~v~~LH 54 (454)
+..+...+. .++++||||+|++.++.++..|..... ...+.++|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 344444443 467899999999999988888765321 13578899
Q ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----cC-----CCCChhHHHHHHhccccCCCC--ce
Q 012877 55 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VD-----CPEDVASYIHRVGRTARYNSG--GR 122 (454)
Q Consensus 55 G~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D-----~P~~~~~YIhRvGRtgR~g~~--G~ 122 (454)
|+|++.+|..+.+.|++ ...|||||+++++|||+ |++++||+ || .|-++.+|+||+|||||.|.. |.
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gvnl-Pa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNL-PARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCC-CceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999 99999999999999999 99999998 77 689999999999999999864 99
Q ss_pred EEEEeCcch
Q 012877 123 SVLFLTPTE 131 (454)
Q Consensus 123 ail~l~p~E 131 (454)
+++++.+.+
T Consensus 390 ~ii~~~~~~ 398 (737)
T PRK02362 390 AVLLAKSYD 398 (737)
T ss_pred EEEEecCch
Confidence 999987754
No 67
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.68 E-value=8.4e-17 Score=164.93 Aligned_cols=129 Identities=26% Similarity=0.438 Sum_probs=111.4
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 91 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~ 91 (454)
..++.|.-.++||||.|...++.|-..|++.. ..++++++||...+.+|.+.++.|+. ....||||||++||||| .+
T Consensus 498 ~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi-~g 576 (725)
T KOG0349|consen 498 VAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDI-TG 576 (725)
T ss_pred hhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccc-cC
Confidence 34566777899999999999999999998752 24789999999999999999999999 99999999999999999 99
Q ss_pred ccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcc-hHHHHHHHHHcCC
Q 012877 92 VDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKMLEKLREAKI 143 (454)
Q Consensus 92 Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~-E~~~l~~L~~~~i 143 (454)
+.++||+-+|.+-..|+||+||+||+.+-|.+|.++... |.-+.......+-
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr 629 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGR 629 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCC
Confidence 999999999999999999999999999999999887653 4333444444443
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=4.6e-16 Score=171.75 Aligned_cols=120 Identities=22% Similarity=0.321 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCcEEEecc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTD 80 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~VLVaTD 80 (454)
.+.|+..+..+|+.| .+.++||||.++.++..++..| + +..+||++++.+|..++++|+. ...+||+|+
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk 550 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK 550 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEec
Confidence 357888888888876 6789999999999988887766 3 3468999999999999999986 679999999
Q ss_pred ccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCCCceE-------EEEeCcchH
Q 012877 81 VASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRS-------VLFLTPTEM 132 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~~G~a-------il~l~p~E~ 132 (454)
|+++|||+ |.+++||++++|. +...|+||+||++|.+..|.+ +.|+++...
T Consensus 551 VgdeGIDl-P~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 551 VGDTSIDL-PEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ccccccCC-CCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 99999999 9999999999985 999999999999999877765 777877654
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=168.20 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccc
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 86 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGL 86 (454)
-+..++.++++|. .+|||+||+.+++.++..|.++. +.++..+||.++.+.|..+-++|++ ...++|||..++-||
T Consensus 242 ~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~-~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 242 LYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLG-PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhc-CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 5667888888775 79999999999999999999984 3899999999999999999999999 999999999999999
Q ss_pred ccCCCccEEEecCCCCChhHHHHHHhccc-cCCCCceEEEEeCcchHHHHHHHHHc----CCCcccccccccccchHHHH
Q 012877 87 DFNKAVDWVVQVDCPEDVASYIHRVGRTA-RYNSGGRSVLFLTPTEMKMLEKLREA----KIPIHFTKANTKRLQPVSGL 161 (454)
Q Consensus 87 D~~p~Vd~VIq~D~P~~~~~YIhRvGRtg-R~g~~G~ail~l~p~E~~~l~~L~~~----~i~i~~~~i~~~k~~~i~~~ 161 (454)
|+ ..|+.||||..|.++..++||+||+| |.|....++++.... ..+++.+... .-.+..+.++.+-+..+.++
T Consensus 319 Di-G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 319 DI-GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred cc-CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 99 99999999999999999999999999 667778888887773 3455544222 44566777888888888999
Q ss_pred HHHHHhhCh
Q 012877 162 LAALLVKYP 170 (454)
Q Consensus 162 l~~ll~~~~ 170 (454)
+.+++...+
T Consensus 397 ivg~~~~~~ 405 (814)
T COG1201 397 IVGMALEKV 405 (814)
T ss_pred HHHHHhhCc
Confidence 998887663
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.65 E-value=9e-16 Score=164.50 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec-cc
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-DV 81 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT-Dv 81 (454)
..+..++..++... .+.++||||.+.++++.+++.|... |+++..+||+|++.+|..+++.|+. ...||||| ++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~ 404 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGV 404 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcce
Confidence 34555555554432 3567899999999999999999986 8999999999999999999999998 88899998 99
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEe
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL 127 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l 127 (454)
+++|+|+ |++++||.+.+|.+...|+||+||++|.+..+...+++
T Consensus 405 l~eG~Di-p~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 405 FSTGISI-KNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ecccccc-ccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999 99999999999999999999999999997655433333
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.63 E-value=1.2e-15 Score=172.15 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=118.9
Q ss_pred HHHHHH-hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccC
Q 012877 12 LWSFIK-AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFN 89 (454)
Q Consensus 12 L~~~Lk-~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~ 89 (454)
+..+++ .++...+||||.+++.|+.+...|+.. |+.+.+||+||+..+|..|...|.. +.+|+|||=++++|||.
T Consensus 475 ~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK- 551 (941)
T KOG0351|consen 475 ILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK- 551 (941)
T ss_pred HHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC-
Confidence 334443 466789999999999999999999998 8999999999999999999999999 99999999999999999
Q ss_pred CCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcC
Q 012877 90 KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAK 142 (454)
Q Consensus 90 p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~ 142 (454)
|+|..||||.+|.+.+.|+|-+||+||.|....|++|+.+.+..-++.+...+
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999988888877765
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=163.31 Aligned_cols=124 Identities=23% Similarity=0.369 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHh-cCCCCceEeecC--------CCCHHHHHHHHHHHhc-
Q 012877 6 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKK-LRPGIPLMCLYG--------RMKQDRRMAIYAQFCE- 71 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~-l~~gi~v~~LHG--------~msq~~R~~il~~F~~- 71 (454)
..|+..|..+|.. ....++||||.++..|.+|...|.. ..+|+....+-| +|+|..+.+++++|+.
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 5688888877754 3468999999999999999999984 334666555555 7999999999999999
Q ss_pred CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 72 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 72 ~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
..+|||||+|+++|||| +.|++||-||+..++-..|||.|| ||+ +.|.++++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI-~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDI-GECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCc-ccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999 999999999999999999999999 998 56888888886554
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.62 E-value=1.7e-15 Score=155.87 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=76.2
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccccccCCCccEEEec
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
..+.++||||+|+..++.++..|+....++.+..+||.+++..|..+. +..||||||+++||||| |.+ +|| +
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi-~~~-~vi-~ 341 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-----QFDILLGTSTVDVGVDF-KRD-WLI-F 341 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-----cCCEEEEecHHhcccCC-CCc-eEE-E
Confidence 356799999999999999999999763356788999999999886442 67899999999999999 766 777 5
Q ss_pred CCCCChhHHHHHHhccc
Q 012877 99 DCPEDVASYIHRVGRTA 115 (454)
Q Consensus 99 D~P~~~~~YIhRvGRtg 115 (454)
+ |.++++|+||+||||
T Consensus 342 ~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCCHHHHhhhcccCC
Confidence 5 999999999999997
No 74
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=2.6e-15 Score=118.96 Aligned_cols=80 Identities=44% Similarity=0.624 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhcc
Q 012877 36 YVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRT 114 (454)
Q Consensus 36 ~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRt 114 (454)
.++..|... ++.+..+||++++.+|..++..|.. ...|||+|+++++|+|+ |.+++||.+++|++...|+|++||+
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~-~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDL-PGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcCh-hcCCEEEEeCCCCCHHHHHHhhccc
Confidence 456777776 8999999999999999999999999 88999999999999999 9999999999999999999999999
Q ss_pred ccCC
Q 012877 115 ARYN 118 (454)
Q Consensus 115 gR~g 118 (454)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9986
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.60 E-value=3.3e-15 Score=172.55 Aligned_cols=111 Identities=22% Similarity=0.416 Sum_probs=95.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccccccCCCccEEEe
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQ 97 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~~p~Vd~VIq 97 (454)
...+.+||||++...++.+++.|.... +.+.+..|||+|++.+|..++..+ ....|||||||+++|||| |+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIVATNIAEtSITI-pgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRIVLATNVAETSLTV-PGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeEEEeccHHhhcccc-CcceEEEE
Confidence 346789999999999999999998752 234578999999999999998752 267899999999999999 99999999
Q ss_pred cC---------------CC---CChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 98 VD---------------CP---EDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 98 ~D---------------~P---~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
++ +| .+.++|+||+|||||. ..|.|+.+++..+.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 86 34 3558999999999999 78999999987653
No 76
>PRK00254 ski2-like helicase; Provisional
Probab=99.60 E-value=7e-15 Score=163.98 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC-------------------------------CCCceEeecCCCCH
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR-------------------------------PGIPLMCLYGRMKQ 59 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~-------------------------------~gi~v~~LHG~msq 59 (454)
.+..+++ .+.++||||+|++.++.++..|.... -...+.++||+|++
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 3445554 36789999999999987776664310 01358899999999
Q ss_pred HHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe-------cCCCC-ChhHHHHHHhccccCC--CCceEEEEeC
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ-------VDCPE-DVASYIHRVGRTARYN--SGGRSVLFLT 128 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq-------~D~P~-~~~~YIhRvGRtgR~g--~~G~ail~l~ 128 (454)
.+|..+.+.|++ ...|||||+++++|+|+ |++++||+ |+.|. .+..|+||+|||||.| ..|.+++++.
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvni-pa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINL-PAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCC-CceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999 99999999999999999 99999994 66655 5679999999999965 6799999998
Q ss_pred cchH-HHHHHH
Q 012877 129 PTEM-KMLEKL 138 (454)
Q Consensus 129 p~E~-~~l~~L 138 (454)
+.+. .+++.+
T Consensus 387 ~~~~~~~~~~~ 397 (720)
T PRK00254 387 TEEPSKLMERY 397 (720)
T ss_pred CcchHHHHHHH
Confidence 7653 444444
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.59 E-value=6e-15 Score=151.36 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHhcC-------------CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C
Q 012877 7 QKLDMLWSFIKAHL-------------NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K 72 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~-------------~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~ 72 (454)
+-+..|..|...+. .+-.||||.|+.+|+.++-.|... ||++..+|.|+...+|..+.+.|.+ +
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHhcCC
Confidence 34555666665433 246899999999999999999876 9999999999999999999999999 9
Q ss_pred CcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 73 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 73 ~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
..|++||..+++|+|- |+|.+|||+++|.++.-|.|..||+||.|..+.|-+++...+..-+.+|.+.
T Consensus 306 ~PvI~AT~SFGMGVDK-p~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDK-PDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCEEEEEeccccccCC-cceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 9999999999999999 9999999999999999999999999999999999999999999888887654
No 78
>PRK01172 ski2-like helicase; Provisional
Probab=99.58 E-value=1.4e-14 Score=160.24 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=95.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCC-----------------------CceEeecCCCCHHHHHHHHHHHhc-CCcE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPG-----------------------IPLMCLYGRMKQDRRMAIYAQFCE-KRSV 75 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~g-----------------------i~v~~LHG~msq~~R~~il~~F~~-~~~V 75 (454)
.++++||||+|++.++.++..|....+. ..+..+||+|++.+|..+.+.|++ ...|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 4678999999999999999888764321 146789999999999999999999 9999
Q ss_pred EEeccccccccccCCCccEEEecCC---------CCChhHHHHHHhccccCC--CCceEEEEeCcch-HHHHHHH
Q 012877 76 LFCTDVASRGLDFNKAVDWVVQVDC---------PEDVASYIHRVGRTARYN--SGGRSVLFLTPTE-MKMLEKL 138 (454)
Q Consensus 76 LVaTDvaaRGLD~~p~Vd~VIq~D~---------P~~~~~YIhRvGRtgR~g--~~G~ail~l~p~E-~~~l~~L 138 (454)
||||+++++|||+ |+. .||.+|. |-++.+|.||+|||||.| ..|.+++++...+ ..+++.+
T Consensus 315 LvaT~~la~Gvni-pa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~ 387 (674)
T PRK01172 315 IVATPTLAAGVNL-PAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKY 387 (674)
T ss_pred EEecchhhccCCC-cce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHH
Confidence 9999999999999 875 5555554 557889999999999998 4688888876654 3444443
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=1.1e-14 Score=168.55 Aligned_cols=122 Identities=19% Similarity=0.371 Sum_probs=99.9
Q ss_pred HHHHHHHHHHh---cCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccc
Q 012877 8 KLDMLWSFIKA---HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVAS 83 (454)
Q Consensus 8 Kl~~L~~~Lk~---~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaa 83 (454)
++..+...+.. ...+.+||||++...++.+++.|.... +++.++.|||+|++.+|..++..+. ...|||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-~rkIVLATNIAE 341 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-GRRIVLATNVAE 341 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-CceEEEeccHHH
Confidence 44444444432 345789999999999999999998753 3567899999999999999855432 468999999999
Q ss_pred cccccCCCccEEEecCCC------------------CChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 84 RGLDFNKAVDWVVQVDCP------------------EDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P------------------~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
+|||| |+|++||++++| -+.++|+||+|||||.| .|.|+.+++..+.
T Consensus 342 tSLTI-pgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 342 TSLTV-PGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred hcccc-CCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 99999 999999999954 35689999999999998 9999999987644
No 80
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=99.56 E-value=6e-15 Score=116.46 Aligned_cols=64 Identities=33% Similarity=0.558 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhcC-CCcccccccCCCHHHHHHHcCCCCCccccc
Q 012877 157 PVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQ-KDKEVFDVTKLSIDEFSASLGLPMTPKIRF 220 (454)
Q Consensus 157 ~i~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~-~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~ 220 (454)
+|+.+++.+|.++++++++|++||+||+|+|+.+ .++.||++++||++++|.||||..+|+|+|
T Consensus 1 ~iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~~~L~l~~~A~sfGL~~~P~v~~ 65 (65)
T PF13959_consen 1 NIQQKLEKLVAKDRELKELAQKAFVSYVRAYASHKELKDIFNVKKLDLGHLAKSFGLLEAPKVRE 65 (65)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhCCcccCCHHHHHHHcCCCCCCCCCC
Confidence 4789999999999999999999999999999987 999999999999999999999999999986
No 81
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.41 E-value=1.6e-13 Score=133.46 Aligned_cols=99 Identities=27% Similarity=0.552 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRG 85 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRG 85 (454)
.+|..-|..+|......+++||+.|...+. |. .. ||||++++||
T Consensus 268 ~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~---------------------------------f~--kr-~vat~lfgrg 311 (387)
T KOG0329|consen 268 NEKNRKLNDLLDVLEFNQVVIFVKSVQRLS---------------------------------FQ--KR-LVATDLFGRG 311 (387)
T ss_pred hhhhhhhhhhhhhhhhcceeEeeehhhhhh---------------------------------hh--hh-hHHhhhhccc
Confidence 456667777777767788999998765411 21 12 8999999999
Q ss_pred cccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH-HHHHHHHHc
Q 012877 86 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLREA 141 (454)
Q Consensus 86 LD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~-~~l~~L~~~ 141 (454)
+|| ..|+.|+|||+|.++++|+||+|||||.|..|.+|.|+...+. .+|..+...
T Consensus 312 mdi-ervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 312 MDI-ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred cCc-ccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 999 9999999999999999999999999999999999999987654 666665543
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.40 E-value=4.9e-13 Score=155.38 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHH---HHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe----
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQ---VKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC---- 78 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~---v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa---- 78 (454)
+|...|..+++.. +..+||||+|+.. |+.+++.|+.. |+++..+||+| ...+++|++ +.+||||
T Consensus 315 ~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~ 386 (1176)
T PRK09401 315 DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL--GINAELAISGF-----ERKFEKFEEGEVDVLVGVASY 386 (1176)
T ss_pred cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCC
Confidence 6788899998765 4689999999888 99999999987 99999999999 234599999 9999999
Q ss_pred ccccccccccCCC-ccEEEecCCCC------ChhHHHHHHhccccC
Q 012877 79 TDVASRGLDFNKA-VDWVVQVDCPE------DVASYIHRVGRTARY 117 (454)
Q Consensus 79 TDvaaRGLD~~p~-Vd~VIq~D~P~------~~~~YIhRvGRtgR~ 117 (454)
||+++||||+ |+ |++|||||+|. ..+.|+||+||+...
T Consensus 387 tdv~aRGIDi-P~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 387 YGVLVRGIDL-PERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCceeecCCC-CcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 6999999999 88 89999999999 788999999999633
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.40 E-value=2e-12 Score=147.90 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=112.3
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C---CcEEEe
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K---RSVLFC 78 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~---~~VLVa 78 (454)
...|+.+|..+|... .+.++|||+......+.|...|... |+....+||+++..+|..+++.|+. . ..+|++
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 356888888888653 4789999999999999999998765 8999999999999999999999986 3 257899
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEE--EEeCcc--hHHHHHHHHH
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV--LFLTPT--EMKMLEKLRE 140 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ai--l~l~p~--E~~~l~~L~~ 140 (454)
|.+++.|||+ ..+++||+||+||||..+.|++||+-|.|+...+. -|++.. |..++.++..
T Consensus 547 TrAGGlGINL-t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 547 TRAGGLGINL-ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred ccccccCCch-hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999876544 445544 4466665543
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.39 E-value=2.8e-12 Score=145.08 Aligned_cols=97 Identities=21% Similarity=0.457 Sum_probs=84.5
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHH----HHHHHHHh-c-C---CcEEEecccccccccc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRR----MAIYAQFC-E-K---RSVLFCTDVASRGLDF 88 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R----~~il~~F~-~-~---~~VLVaTDvaaRGLD~ 88 (454)
..+.++||||||++.+..+|+.|+... +...+..+||++++.+| ..+++.|. + + ..|||||+|+++||||
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 346789999999999999999999763 23689999999999999 46788894 3 3 4799999999999999
Q ss_pred CCCccEEEecCCCCChhHHHHHHhccccCCC
Q 012877 89 NKAVDWVVQVDCPEDVASYIHRVGRTARYNS 119 (454)
Q Consensus 89 ~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~ 119 (454)
+ +|+||...+| ++.|+||+||++|.++
T Consensus 638 -d-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 -D-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred -C-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 4 8999999999 6899999999999986
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.39 E-value=2.2e-12 Score=150.16 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCh---HHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe----c
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSC---KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC----T 79 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~---k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa----T 79 (454)
+...|..+|+.. +..+||||+|+ +.|+.++..|... |+.+..+||+|++ .++++|++ +..|||| |
T Consensus 314 ~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~--g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~t 386 (1171)
T TIGR01054 314 LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH--GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYY 386 (1171)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC--CceEEEEeCCCCH----HHHHHHHcCCCCEEEEecccc
Confidence 356678888664 56899999999 9999999999986 9999999999974 68999999 9999999 5
Q ss_pred cccccccccCCC-ccEEEecCCCC
Q 012877 80 DVASRGLDFNKA-VDWVVQVDCPE 102 (454)
Q Consensus 80 DvaaRGLD~~p~-Vd~VIq~D~P~ 102 (454)
|+++||||+ |+ |++|||||+|.
T Consensus 387 dv~aRGIDi-p~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 387 GTLVRGLDL-PERVRYAVFLGVPK 409 (1171)
T ss_pred CcccccCCC-CccccEEEEECCCC
Confidence 999999999 88 89999999883
No 86
>PRK14701 reverse gyrase; Provisional
Probab=99.39 E-value=5.3e-13 Score=158.59 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=104.5
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHH---HHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec----cc
Q 012877 10 DMLWSFIKAHLNSKILVFLTSCKQV---KYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT----DV 81 (454)
Q Consensus 10 ~~L~~~Lk~~~~~KiIVF~sS~k~v---~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT----Dv 81 (454)
..|+.+|+.. +..+||||+|++.+ +.+++.|+.. |+.+..+||+ |..++++|++ +..||||| |+
T Consensus 320 ~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~--Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gv 391 (1638)
T PRK14701 320 EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED--GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGT 391 (1638)
T ss_pred HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC--CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCe
Confidence 5788888776 56899999998865 8999999986 9999999995 8899999999 99999999 59
Q ss_pred cccccccCCC-ccEEEecCCCC---ChhHHHHHH-------------hccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 82 ASRGLDFNKA-VDWVVQVDCPE---DVASYIHRV-------------GRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 82 aaRGLD~~p~-Vd~VIq~D~P~---~~~~YIhRv-------------GRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
++||||+ |+ |.+|||||+|. +++.|.|.. ||+||.|..+.+++...+....+++.+..
T Consensus 392 aaRGIDi-P~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 392 LVRGLDL-PERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred eEecCcc-CCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 9999999 87 99999999999 888777766 99999998888876666666666665543
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=2.7e-12 Score=138.07 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCCCceEeecCCCCHHHH--HHHHHHHhc-CCcEEEeccccccccccCCCccEEE--ecCC----CC--
Q 012877 34 VKYVFEAFKKLRPGIPLMCLYGRMKQDRR--MAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVV--QVDC----PE-- 102 (454)
Q Consensus 34 v~~l~~~L~~l~~gi~v~~LHG~msq~~R--~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VI--q~D~----P~-- 102 (454)
++.+.+.|.+.+|+.++..+|+++++..+ ..+++.|.+ +.+|||+|+++++|+|| |+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~-~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHF-PNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCC-CcccEEEEEcCcccccCcccc
Confidence 58889999999999999999999987766 899999999 99999999999999999 9999985 6664 32
Q ss_pred ----ChhHHHHHHhccccCCCCceEEEEeCcch
Q 012877 103 ----DVASYIHRVGRTARYNSGGRSVLFLTPTE 131 (454)
Q Consensus 103 ----~~~~YIhRvGRtgR~g~~G~ail~l~p~E 131 (454)
....|+|++||+||.+..|.+++.....+
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 25678999999999999999987654333
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=5.9e-12 Score=140.65 Aligned_cols=125 Identities=23% Similarity=0.243 Sum_probs=111.6
Q ss_pred CcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
...+|+..|...+.. ..+.++||||+|...++.++..|... |++...|||. +.+|...+..|.. ...|+||||
T Consensus 411 t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~--gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATN 486 (830)
T PRK12904 411 TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA--GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATN 486 (830)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCceEeccCc--hHHHHHHHHHhcCCCceEEEecc
Confidence 456799999999866 55789999999999999999999987 9999999996 7899999999999 999999999
Q ss_pred ccccccccCCC-------------------------------------ccEEEecCCCCChhHHHHHHhccccCCCCceE
Q 012877 81 VASRGLDFNKA-------------------------------------VDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 123 (454)
Q Consensus 81 vaaRGLD~~p~-------------------------------------Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a 123 (454)
+|+||+||+-+ ==+||-...|.|..---|-.|||||-|.+|.+
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999999332 11899999999999999999999999999999
Q ss_pred EEEeCcchH
Q 012877 124 VLFLTPTEM 132 (454)
Q Consensus 124 il~l~p~E~ 132 (454)
-+|++-.+.
T Consensus 567 ~f~lSleD~ 575 (830)
T PRK12904 567 RFYLSLEDD 575 (830)
T ss_pred eEEEEcCcH
Confidence 999987765
No 89
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.30 E-value=5.2e-12 Score=133.84 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=106.1
Q ss_pred cchHHHHHHHHHHhc--------CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcE
Q 012877 5 LEQKLDMLWSFIKAH--------LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSV 75 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--------~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~V 75 (454)
..+|.+++..+.+.. ..+++|||++|++.|+.++..|... |+++..+|+||+..+|..+-..|.+ ...+
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~ 493 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAA 493 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHHHhcCCcce
Confidence 467888888888642 2578999999999999999999876 9999999999999999999999999 9999
Q ss_pred EEeccccccccccCCCccEEEe----cCCCC-ChhHHHHHHhccccCC--CCceEEEEeCcc
Q 012877 76 LFCTDVASRGLDFNKAVDWVVQ----VDCPE-DVASYIHRVGRTARYN--SGGRSVLFLTPT 130 (454)
Q Consensus 76 LVaTDvaaRGLD~~p~Vd~VIq----~D~P~-~~~~YIhRvGRtgR~g--~~G~ail~l~p~ 130 (454)
+|+|-+++-|+|| |+- -||. ++.-| ++..|.|++||+||.+ ..|.+++++.|.
T Consensus 494 VVTTAAL~AGVDF-PAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 494 VVTTAALAAGVDF-PAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred EeehhhhhcCCCC-chH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999 753 4443 44444 8999999999999987 479999999876
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.30 E-value=2.9e-11 Score=131.17 Aligned_cols=180 Identities=20% Similarity=0.244 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCCh--------HHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCc
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 74 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~--------k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~ 74 (454)
.++..-++.+|... .+.++.|-|+-. ..+..+++.|...+|+..+..+||+|+..+..+++.+|++ +.+
T Consensus 456 ~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 456 HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 35666677777543 477888888653 4677889999988899999999999999999999999999 999
Q ss_pred EEEeccccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCCCceEEEEeCcch-H---HHHHHHHHc--CCCccc
Q 012877 75 VLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPTE-M---KMLEKLREA--KIPIHF 147 (454)
Q Consensus 75 VLVaTDvaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~~G~ail~l~p~E-~---~~l~~L~~~--~i~i~~ 147 (454)
|||||.|.+-|||+ |+.++.|.++.-. ..++..|-.||+||.+..+.|++++.+.. . .-|+.+... |..|.+
T Consensus 536 ILVaTTVIEVGVdV-PnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE 614 (677)
T COG1200 536 ILVATTVIEVGVDV-PNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAE 614 (677)
T ss_pred EEEEeeEEEecccC-CCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehh
Confidence 99999999999999 9999999888643 78999999999999999999999999876 2 455555555 777776
Q ss_pred ccccccccc--------hHHHHHHHHHhhChhHHHHHHHHHHHHHHH
Q 012877 148 TKANTKRLQ--------PVSGLLAALLVKYPDMQHRAQKAFITYLRS 186 (454)
Q Consensus 148 ~~i~~~k~~--------~i~~~l~~ll~~~~el~~~aqrAf~sylrs 186 (454)
.++.-...- ....-.-+=+..|..+...|++.....+..
T Consensus 615 ~DLklRGpGe~lG~rQSG~~~f~~Adl~~D~~ile~ar~~a~~~~~~ 661 (677)
T COG1200 615 EDLKLRGPGELLGTRQSGLPEFRVADLVRDYDILEEARKDAAKLLSR 661 (677)
T ss_pred hhHhccCCccccCCcccCCcceEEeeHHhhHHHHHHHHHHHHHHHhh
Confidence 554321111 011100111334677777777766555544
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.25 E-value=2.2e-11 Score=135.23 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=92.1
Q ss_pred EeCChHHHHHHHHHHHhcCCCCceEeecCCCCH--HHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe--cCCC
Q 012877 27 FLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ--DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ--VDCP 101 (454)
Q Consensus 27 F~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq--~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq--~D~P 101 (454)
|......++.+.+.|.+++|++++..+||++.+ .++..++..|.+ +.+|||+|+++++|+|| |+|++|+. +|.+
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~-p~v~lV~il~aD~~ 510 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDF-PNVTLVGVLDADLG 510 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCC-CCcCEEEEEcCchh
Confidence 444456788999999999999999999999874 578999999999 99999999999999999 99999955 4544
Q ss_pred CC----------hhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 102 ED----------VASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 102 ~~----------~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
-+ ...|+|++||+||.+..|.+++.....+...++.+
T Consensus 511 l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 511 LFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred ccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 33 36799999999999999999988765554444443
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=5e-11 Score=133.69 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=109.6
Q ss_pred CcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 4 PLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
....|...+..-+.. ..+.++||||+|...++.++..|.+. |++...|||++.+.+|..+.+.|+.. .|+||||+
T Consensus 425 t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G-~VtIATNm 501 (896)
T PRK13104 425 TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPG-AVTIATNM 501 (896)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCC-cEEEeccC
Confidence 456788888877743 34789999999999999999999987 99999999999999999999999984 39999999
Q ss_pred cccccccCCC--------------------------------c-----cEEEecCCCCChhHHHHHHhccccCCCCceEE
Q 012877 82 ASRGLDFNKA--------------------------------V-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRSV 124 (454)
Q Consensus 82 aaRGLD~~p~--------------------------------V-----d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ai 124 (454)
|+||+||.-+ | =+||-...+.|..-=-|-.||+||-|.+|.+-
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 9999999322 1 17888889999888889999999999999999
Q ss_pred EEeCcchH
Q 012877 125 LFLTPTEM 132 (454)
Q Consensus 125 l~l~p~E~ 132 (454)
+|++-.+.
T Consensus 582 f~lSleD~ 589 (896)
T PRK13104 582 FYLSLEDN 589 (896)
T ss_pred EEEEcCcH
Confidence 99987664
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.22 E-value=1e-10 Score=123.94 Aligned_cols=114 Identities=23% Similarity=0.375 Sum_probs=101.9
Q ss_pred cchHHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 5 LEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
.+.++..+..++..+ .+.+++|||++..++..++..|.. +|+ +..+.|..++.+|..+++.|+. ...+||++.|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~--~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl 342 (442)
T COG1061 266 SERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA--PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVL 342 (442)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC--CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeec
Confidence 355777777888777 478999999999999999999976 477 8899999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhcccc-CCCCce
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTAR-YNSGGR 122 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR-~g~~G~ 122 (454)
..|+|+ |+++++|+.....+...|+||+||.-| ...++.
T Consensus 343 ~EGvDi-P~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 343 DEGVDI-PDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred cceecC-CCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999 999999999999999999999999999 333443
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=1.3e-10 Score=130.17 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA 82 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva 82 (454)
...|...+..-+... .+.++||||+|...++.++..|... |++...|||++++.++..+...|+... |+|||++|
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnmA 507 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCCc
Confidence 467888887777543 4789999999999999999999987 999999999999999999999999822 99999999
Q ss_pred ccccccCCC-------------------------------c-----cEEEecCCCCChhHHHHHHhccccCCCCceEEEE
Q 012877 83 SRGLDFNKA-------------------------------V-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 126 (454)
Q Consensus 83 aRGLD~~p~-------------------------------V-----d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~ 126 (454)
+||+||.-+ | =+||-...|.|..-=-|-.||+||-|.+|.+-+|
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 999999312 1 1789899999998889999999999999999999
Q ss_pred eCcchH
Q 012877 127 LTPTEM 132 (454)
Q Consensus 127 l~p~E~ 132 (454)
++-.+.
T Consensus 588 lSlED~ 593 (908)
T PRK13107 588 LSMEDS 593 (908)
T ss_pred EEeCcH
Confidence 987665
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.17 E-value=6.9e-11 Score=120.33 Aligned_cols=127 Identities=17% Similarity=0.288 Sum_probs=112.1
Q ss_pred HHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccc
Q 012877 9 LDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGL 86 (454)
Q Consensus 9 l~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGL 86 (454)
+.-+..+|+.. .+...||||-|.+.++.+...|+.+ ||.+..+|..|.+.+|..+-+.|.. +.+|+|||-++++||
T Consensus 304 ~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgi 381 (695)
T KOG0353|consen 304 IEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGI 381 (695)
T ss_pred HHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccccceEEEEEEeeecccC
Confidence 44455555433 3677899999999999999999987 9999999999999999999999999 999999999999999
Q ss_pred ccCCCccEEEecCCCCChhHHHH-------------------------------------------HHhccccCCCCceE
Q 012877 87 DFNKAVDWVVQVDCPEDVASYIH-------------------------------------------RVGRTARYNSGGRS 123 (454)
Q Consensus 87 D~~p~Vd~VIq~D~P~~~~~YIh-------------------------------------------RvGRtgR~g~~G~a 123 (454)
|- |+|.+|||..+|.+.+.|.| ..||+||.+.+..|
T Consensus 382 dk-pdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 382 DK-PDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CC-CCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99 99999999999999999999 67999999999999
Q ss_pred EEEeCcchHHHHHHH
Q 012877 124 VLFLTPTEMKMLEKL 138 (454)
Q Consensus 124 il~l~p~E~~~l~~L 138 (454)
|+++.-.+...+..+
T Consensus 461 ilyy~~~difk~ssm 475 (695)
T KOG0353|consen 461 ILYYGFADIFKISSM 475 (695)
T ss_pred EEEechHHHHhHHHH
Confidence 999987776444433
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.14 E-value=3.1e-10 Score=131.70 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=83.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC----CCC---ceEeecCCCCHHHHHHHHHHHhc-CC-cEEEeccccccccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR----PGI---PLMCLYGRMKQDRRMAIYAQFCE-KR-SVLFCTDVASRGLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~----~gi---~v~~LHG~msq~~R~~il~~F~~-~~-~VLVaTDvaaRGLD~~p 90 (454)
.+.|+||||.|..+++.+...|...+ |++ .+..+||.++ .+..++.+|++ .. .||||+|++.+|+|+ |
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv-P 773 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDV-P 773 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCc-c
Confidence 35799999999999999988877642 333 4667999986 46789999999 55 699999999999999 9
Q ss_pred CccEEEecCCCCChhHHHHHHhccccCC
Q 012877 91 AVDWVVQVDCPEDVASYIHRVGRTARYN 118 (454)
Q Consensus 91 ~Vd~VIq~D~P~~~~~YIhRvGRtgR~g 118 (454)
.|++||.+.+|.+...|+|++||+.|.-
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 9999999999999999999999999974
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.09 E-value=8.3e-10 Score=111.60 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=104.0
Q ss_pred HHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccc
Q 012877 11 MLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 87 (454)
Q Consensus 11 ~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD 87 (454)
.|+.+|+.+. +.+++||+++....+.++..|+..+|...+.++|+.- ..|.+.+++|++ ...+||+|.+++||+.
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccc
Confidence 5788887655 5899999999999999999998877888889999874 368999999999 9999999999999999
Q ss_pred cCCCccEEEecCCC--CChhHHHHHHhccccCCC--CceEEEEeCcchHHHHHHH
Q 012877 88 FNKAVDWVVQVDCP--EDVASYIHRVGRTARYNS--GGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 88 ~~p~Vd~VIq~D~P--~~~~~YIhRvGRtgR~g~--~G~ail~l~p~E~~~l~~L 138 (454)
| |+|+++|--.-. .+-+..||..||+||.-. .|..+.|-..-...|.+..
T Consensus 371 f-p~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 371 F-PNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred c-ccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 9 999987754333 578889999999999853 5777777666666666544
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.06 E-value=1.2e-09 Score=124.45 Aligned_cols=109 Identities=17% Similarity=0.323 Sum_probs=101.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD 99 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D 99 (454)
++++..-+|..+..+.+...|+.+.|...+.+.||.|+..+-..++..|-+ .++|||||.+.+-|||| |+++.+|..+
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDI-PnANTiIIe~ 881 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDI-PNANTIIIER 881 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCC-CCCceEEEec
Confidence 778888889999999999999999999999999999999999999999999 99999999999999999 8888887655
Q ss_pred CC-CChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 100 CP-EDVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 100 ~P-~~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
.- ...++..|-.||+||..+.|.|++++.+.
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 43 46899999999999999999999999865
No 99
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=120.52 Aligned_cols=169 Identities=20% Similarity=0.232 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHH----HHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 8 KLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFE----AFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 8 Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~----~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
+...+-.++... .+-++||||.|+.+|+.++. .+....+ ...+..+||+|...+|..+...|+. +..++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~s 370 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIA 370 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEec
Confidence 444444444332 47799999999999999973 3333310 1458889999999999999999999 9999999
Q ss_pred ccccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCCCceEEEEeCcc--hHHHHHHHHHc-C---CCccccccc
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPT--EMKMLEKLREA-K---IPIHFTKAN 151 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~~G~ail~l~p~--E~~~l~~L~~~-~---i~i~~~~i~ 151 (454)
|..+.-|||| .++++||.+..|. +...|+||.||+||.++.+..++++..+ +..|+..-... . .++..+.++
T Consensus 371 t~Alelgidi-G~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~~~~~~e~~~~~ 449 (851)
T COG1205 371 TNALELGIDI-GSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVD 449 (851)
T ss_pred chhhhhceee-hhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhcccCcccccccC
Confidence 9999999999 9999999999999 8999999999999999777777776633 22344333322 3 566666677
Q ss_pred ccccchHHHHHHHHHhhChhHHHHHH
Q 012877 152 TKRLQPVSGLLAALLVKYPDMQHRAQ 177 (454)
Q Consensus 152 ~~k~~~i~~~l~~ll~~~~el~~~aq 177 (454)
......+..++...+.+.|......+
T Consensus 450 ~~n~~~l~~hl~~~~~E~p~~~~~~~ 475 (851)
T COG1205 450 DNNEYLLDGHLLCADAELPLKDRELL 475 (851)
T ss_pred CCCcchhhhhHHhhCccCCccchhcc
Confidence 66666667777766666554433333
No 100
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.93 E-value=8e-09 Score=109.45 Aligned_cols=129 Identities=26% Similarity=0.350 Sum_probs=111.4
Q ss_pred CcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
|...-++-|++-|+. ..+.+++|-+-|.+.++.|.+.|..+ |+.+..+|+.+..-+|.+++.+.+. ...|||.-+
T Consensus 427 p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 427 PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh
Confidence 445566677776654 34789999999999999999999998 9999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCC-----CCChhHHHHHHhccccCCCCceEEEEeCcchHHHHH
Q 012877 81 VASRGLDFNKAVDWVVQVDC-----PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLE 136 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~-----P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~ 136 (454)
++-.|||+ |.|.+|..+|. ..+-.+.||-+|||||. -.|.+|++...-...|-+
T Consensus 505 LLREGLDi-PEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~ 563 (663)
T COG0556 505 LLREGLDL-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQK 563 (663)
T ss_pred hhhccCCC-cceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHH
Confidence 99999999 99999998875 56899999999999997 568998887654333333
No 101
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.85 E-value=1.3e-08 Score=108.30 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=129.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC----CCC--ceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR----PGI--PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~----~gi--~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~V 92 (454)
.+-++|.||.+++.|+.+....+..+ |.+ .++.+.||-+.++|..+-...-. +..-+|||++++-|||| .+.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDI-G~L 602 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDI-GHL 602 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccc-ccc
Confidence 35689999999999988776555432 221 36778999999999999877766 88889999999999999 999
Q ss_pred cEEEecCCCCChhHHHHHHhccccCCCCceEEEEe--CcchHHHHHHHHHc-CCCcccccccccccchHHHHHHHHHhhC
Q 012877 93 DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFL--TPTEMKMLEKLREA-KIPIHFTKANTKRLQPVSGLLAALLVKY 169 (454)
Q Consensus 93 d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l--~p~E~~~l~~L~~~-~i~i~~~~i~~~k~~~i~~~l~~ll~~~ 169 (454)
|.|++.++|-+.+.+.|..||+||.++.+.++.+. .|-+..|+..-..- +.|-.++.++....--+..+||-...+-
T Consensus 603 DAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~EL 682 (1034)
T KOG4150|consen 603 DAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALEL 682 (1034)
T ss_pred eeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcC
Confidence 99999999999999999999999999988876554 56677777654443 6666666666555555677777666666
Q ss_pred hhHHHHHHHHHHH-HHHHhh
Q 012877 170 PDMQHRAQKAFIT-YLRSVH 188 (454)
Q Consensus 170 ~el~~~aqrAf~s-ylrs~~ 188 (454)
|--.+.-+..|-+ .+|-++
T Consensus 683 PIN~~~D~q~Fg~~~lr~IC 702 (1034)
T KOG4150|consen 683 PINLQYDQQHFGSGELRNIC 702 (1034)
T ss_pred ccccchhhhhcccHHHHhhH
Confidence 6555555666665 666655
No 102
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.83 E-value=1.9e-08 Score=113.10 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=94.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc---------C----------C----------------CCceEeecCCCCHHHHHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKL---------R----------P----------------GIPLMCLYGRMKQDRRMA 64 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l---------~----------~----------------gi~v~~LHG~msq~~R~~ 64 (454)
.++++||||+|++.+...+..|+.. . . -..+..+|++|+...|..
T Consensus 252 ~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~ 331 (766)
T COG1204 252 EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQL 331 (766)
T ss_pred cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHH
Confidence 3679999999999998888888731 0 0 123678999999999999
Q ss_pred HHHHHhc-CCcEEEeccccccccccCCCccEEEe-----cC-----CCCChhHHHHHHhccccCC--CCceEEEEeCcch
Q 012877 65 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ-----VD-----CPEDVASYIHRVGRTARYN--SGGRSVLFLTPTE 131 (454)
Q Consensus 65 il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq-----~D-----~P~~~~~YIhRvGRtgR~g--~~G~ail~l~p~E 131 (454)
+-+.|+. ...|||||.-++.|+|+ |+ +.||. || .+-++-+|+|+.|||||.| ..|.++++.+..+
T Consensus 332 vE~~Fr~g~ikVlv~TpTLA~GVNL-PA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 332 VEDAFRKGKIKVLVSTPTLAAGVNL-PA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred HHHHHhcCCceEEEechHHhhhcCC-cc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 9999999 99999999999999999 85 55553 66 5668899999999999987 5688888885443
Q ss_pred H-HHHHHHHHc
Q 012877 132 M-KMLEKLREA 141 (454)
Q Consensus 132 ~-~~l~~L~~~ 141 (454)
. .++......
T Consensus 410 ~~~~~~~~~~~ 420 (766)
T COG1204 410 ELEYLAELYIQ 420 (766)
T ss_pred chhHHHHHhhc
Confidence 3 444444333
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.79 E-value=1.8e-08 Score=113.21 Aligned_cols=113 Identities=19% Similarity=0.311 Sum_probs=93.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHh----c-CCcEEEeccccccccccCCCccE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC----E-KRSVLFCTDVASRGLDFNKAVDW 94 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~----~-~~~VLVaTDvaaRGLD~~p~Vd~ 94 (454)
.+.+++|-|||...|..+|..|+...+ +++.|||++....|.+....+. . ...|+|||.|++-|||+ +++|
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi--dfd~ 514 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI--DFDV 514 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc--ccCe
Confidence 468999999999999999999998733 7999999999999998888655 3 67899999999999999 5898
Q ss_pred EEecCCCCChhHHHHHHhccccCC--CCceEEEEeCcchHHHHHHH
Q 012877 95 VVQVDCPEDVASYIHRVGRTARYN--SGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 95 VIq~D~P~~~~~YIhRvGRtgR~g--~~G~ail~l~p~E~~~l~~L 138 (454)
+|-= +..++..|||+||++|.| ..|.++++.......+....
T Consensus 515 mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~ 558 (733)
T COG1203 515 LITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYS 558 (733)
T ss_pred eeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhh
Confidence 8854 345778999999999999 57777777665544444433
No 104
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.71 E-value=7.7e-08 Score=102.37 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=94.1
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEecccccccccc
Q 012877 12 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDF 88 (454)
Q Consensus 12 L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTDvaaRGLD~ 88 (454)
+..-|++...+-|||.|+. +.+-.+...+.+. .+-.+.+++|.++++.|.+--..|++ .++||||||+.++|||+
T Consensus 348 ~~~sl~nlk~GDCvV~FSk-k~I~~~k~kIE~~-g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 348 ALGSLSNLKPGDCVVAFSK-KDIFTVKKKIEKA-GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred hhhhhccCCCCCeEEEeeh-hhHHHHHHHHHHh-cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 3444445556778888864 4566666666664 23459999999999999999999998 67999999999999999
Q ss_pred CCCccEEEecCCC---------CChhHHHHHHhccccCCC---CceEEEEeCcchHHHHHHHHHc
Q 012877 89 NKAVDWVVQVDCP---------EDVASYIHRVGRTARYNS---GGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 89 ~p~Vd~VIq~D~P---------~~~~~YIhRvGRtgR~g~---~G~ail~l~p~E~~~l~~L~~~ 141 (454)
+|+-||.|++- -++.+..|-+||+||.|. .|.+..|. ..+...|+.+.+.
T Consensus 426 --~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 426 --NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILKR 487 (700)
T ss_pred --ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHHhC
Confidence 79999999874 467888999999999974 45554443 2333566655544
No 105
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=1.1e-07 Score=106.47 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=101.0
Q ss_pred CcchHHHHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHH-HHHHHhcCCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMA-IYAQFCEKRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~-~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~-il~~F~~~~~VLVaTD 80 (454)
....|+..+..-+.. | .+.++||.|.|...++.++..|.+. |++.-+|++... ++.. ++.+-.....|.|||+
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~--e~EA~IIa~AG~~GaVTIATN 482 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQN--AREAEIIAKAGQKGAITIATN 482 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccch--hhHHHHHHhCCCCCeEEEecc
Confidence 456788888876654 3 4789999999999999999999987 999999999744 3433 3332222789999999
Q ss_pred ccccccccCCCcc--------EEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 81 VASRGLDFNKAVD--------WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 81 vaaRGLD~~p~Vd--------~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
.|+||.|| .--. +||....|.+..---|-.|||||.|.+|.+-+|++-.+.
T Consensus 483 MAGRGTDI-~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 483 MAGRGTDI-KLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred cccCCcCc-cCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 99999999 4222 999999999998889999999999999999999887654
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.68 E-value=7.5e-08 Score=107.58 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=97.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC-------------------------C-----------CCceEeecCCCCHHHHHH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR-------------------------P-----------GIPLMCLYGRMKQDRRMA 64 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~-------------------------~-----------gi~v~~LHG~msq~~R~~ 64 (454)
++.+||||++++-++-++..+.... | -..+.++|.|++..+|..
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 4679999999998887776553321 1 124678999999999999
Q ss_pred HHHHHhc-CCcEEEeccccccccccCCCccEEEecCC----CCChhHHHHHHhccccCC--CCceEEEEeCcchHHHHHH
Q 012877 65 IYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC----PEDVASYIHRVGRTARYN--SGGRSVLFLTPTEMKMLEK 137 (454)
Q Consensus 65 il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~----P~~~~~YIhRvGRtgR~g--~~G~ail~l~p~E~~~l~~ 137 (454)
+-..|+. ...|++||+.++-|+++ |+..++|-.-. +-+.-+|.|++|||||+| ..|.+|+++.+.+..++..
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNL-PArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNL-PARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcC-CcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 9999999 89999999999999999 98888876432 236789999999999997 5799999999999866655
Q ss_pred HHHc
Q 012877 138 LREA 141 (454)
Q Consensus 138 L~~~ 141 (454)
|-..
T Consensus 619 lv~~ 622 (1008)
T KOG0950|consen 619 LVNS 622 (1008)
T ss_pred HHhc
Confidence 5544
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.67 E-value=5.5e-08 Score=109.66 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=93.1
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHh-cC-CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccE
Q 012877 18 AHLNSKILVFLTSCKQVKYVFEAFKK-LR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDW 94 (454)
Q Consensus 18 ~~~~~KiIVF~sS~k~v~~l~~~L~~-l~-~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~ 94 (454)
.+..+.+|||++-...++.+++.|.. .. +.+.++.|||.|+..++..+++--.. ...|++||+||+-+|.| |+|.+
T Consensus 256 ~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI-~gIr~ 334 (845)
T COG1643 256 REGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI-PGIRY 334 (845)
T ss_pred cCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceee-CCeEE
Confidence 44578899999999999999999997 22 46899999999999999887666555 45599999999999999 99999
Q ss_pred EEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 95 VVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 95 VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
||.-+. |-+-++..||.||+||-+ +|.|+=+++..
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHH
Confidence 997554 335677789999999984 79999888754
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.62 E-value=1e-07 Score=103.39 Aligned_cols=119 Identities=23% Similarity=0.382 Sum_probs=96.8
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCC------ceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI------PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi------~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
+.+.+-.+.+.+-+|||.+....++.+++.|.+..... -++.+||.|+.+++..++..--. ...|+|||++|+
T Consensus 248 tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAE 327 (674)
T KOG0922|consen 248 TVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAE 327 (674)
T ss_pred HHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceee
Confidence 33444445567889999999999999999998863222 35789999999999988777766 778999999999
Q ss_pred cccccCCCccEEEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeCcch
Q 012877 84 RGLDFNKAVDWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPTE 131 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E 131 (454)
--|-| |+|.+||.-+. |-+-++-.||.||+||.| +|.|+-+++.++
T Consensus 328 TSlTI-~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 328 TSLTI-DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred eeEEe-cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 99999 99999997443 557778899999999985 689998887665
No 109
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.59 E-value=5.9e-07 Score=100.08 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CC---cEEEec
Q 012877 6 EQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFCT 79 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~---~VLVaT 79 (454)
..|+..|..+|.... ..-.+|+++...+.-.+.+.+.... |..++.|||.|+..+|..+++.|+. .. -.|.+|
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSs 655 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSS 655 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEec
Confidence 346667777763221 2223455566777777777777776 9999999999999999999999999 32 467789
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEE--eCcc--hH-HHHHHHHHcCC
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF--LTPT--EM-KMLEKLREAKI 143 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~--l~p~--E~-~~l~~L~~~~i 143 (454)
-+.+.||++ -+.+.||-||++|||+.=.|.++|+-|.|++-.|+++ ++.+ |+ -|-++....++
T Consensus 656 KAgg~GinL-iGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 656 KAGGEGLNL-IGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGL 723 (776)
T ss_pred ccccCceee-cccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhh
Confidence 999999999 8999999999999999999999999999998776654 4322 44 44444444443
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=6.9e-07 Score=98.87 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=103.5
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
....|...+..-+... .+.++||.|.|...++.+...|.+. |++...|+++... .-..++.+-.....|.|||+.
T Consensus 408 t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~--gI~h~vLNAk~~~-~EA~IIa~AG~~gaVTIATNM 484 (764)
T PRK12326 408 TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA--GVPAVVLNAKNDA-EEARIIAEAGKYGAVTVSTQM 484 (764)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC--CCcceeeccCchH-hHHHHHHhcCCCCcEEEEecC
Confidence 3466888877766442 4789999999999999999999987 9999999987443 224455544447889999999
Q ss_pred cccccccCCC---------c-----cEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHH
Q 012877 82 ASRGLDFNKA---------V-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKM 134 (454)
Q Consensus 82 aaRGLD~~p~---------V-----d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~ 134 (454)
|+||.||.-+ | =+||....|.+...--|-.||+||-|.+|.+-+|++-.+.-+
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHH
Confidence 9999998211 1 289999999999999999999999999999999998776533
No 111
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.51 E-value=4.1e-07 Score=100.11 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C--CcEEEecc
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTD 80 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~--~~VLVaTD 80 (454)
.-|+.+|..+|+.- .+.++|+|..|+...+.+-..|... +|+..+.+.|..+-..|..++++|.. . .-.|++|-
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~-~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA-KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc-CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 45888888888653 3679999999999999998888853 69999999999999999999999997 3 35789999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEE
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 125 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail 125 (454)
|.+-|+++ .+.+-||.||+-|||++=.|-.-|+.|+|++--+++
T Consensus 608 vGGLGlNL-TgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 608 VGGLGLNL-TGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred cccccccc-ccCceEEEECCCCCCccchHHHHHHHhhcCccceEE
Confidence 99999999 999999999999999999999999999998654443
No 112
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.48 E-value=4.5e-07 Score=103.44 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=110.1
Q ss_pred HHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc----CCcEEEeccc
Q 012877 8 KLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE----KRSVLFCTDV 81 (454)
Q Consensus 8 Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~----~~~VLVaTDv 81 (454)
|+-+|-.+|-. ..+.+||||.......+.|.++|... +++.--|-|++.-.-|...++.|+. ....|+||-+
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRA 761 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRA 761 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEeccc
Confidence 44444444433 34789999999999999999999886 9999999999999999999999998 3478999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCce--EEEEeCcc--hHHHHHHHHHc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR--SVLFLTPT--EMKMLEKLREA 141 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~--ail~l~p~--E~~~l~~L~~~ 141 (454)
.+-|||+ ...|.||.||.-|||-.=+|...||-|.|++-. ++-|++.. |+.|+.+-..+
T Consensus 762 GGLGINL-atADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 762 GGLGINL-ATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred Ccccccc-cccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999998654 55566654 55777765544
No 113
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.43 E-value=7.7e-07 Score=97.74 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=114.5
Q ss_pred cCcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C---CcEE
Q 012877 3 VPLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K---RSVL 76 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~---~~VL 76 (454)
|....|+.+|-.+|.. ..++++|||.......+.+-.++.-. ++...-+.|.++.++|...++.|.. . .-.|
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R--~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLR--GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhc--CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 3445677777777754 34889999988888887777766543 8999999999999999999999998 4 3478
Q ss_pred EeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEE--EeCcc--hHHHHHHHHHcCCCcccccccc
Q 012877 77 FCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL--FLTPT--EMKMLEKLREAKIPIHFTKANT 152 (454)
Q Consensus 77 VaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail--~l~p~--E~~~l~~L~~~~i~i~~~~i~~ 152 (454)
++|-+++-|||+ -+.|.||.||.-|||-.=.|..-||-|.|+.-.+.+ |++.+ |..++++-.. +..+..+.|..
T Consensus 545 LSTRAGGLGINL-~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~-KL~Ld~~VIq~ 622 (971)
T KOG0385|consen 545 LSTRAGGLGINL-TAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA-KLRLDKLVIQQ 622 (971)
T ss_pred Eecccccccccc-ccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH-Hhchhhhhhcc
Confidence 999999999999 999999999999999999999999999998765544 55555 3345554433 44444444443
Q ss_pred c
Q 012877 153 K 153 (454)
Q Consensus 153 ~ 153 (454)
+
T Consensus 623 g 623 (971)
T KOG0385|consen 623 G 623 (971)
T ss_pred C
Confidence 3
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=2e-06 Score=97.46 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHH-HHHHHHhcCCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRM-AIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~-~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~-~il~~F~~~~~VLVaTDv 81 (454)
...|...+..-+.. | .+.++||-|.|....+.+...|... |++...|+.... .+. .++..-.....|.|||+.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~--gi~h~vLNak~~--~~Ea~iia~AG~~g~VTIATNm 625 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQN--RIEHTVLNAKNH--AQEAEIIAGAGKLGAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc--CCcceecccchh--hhHHHHHHhcCCCCcEEEeecc
Confidence 35677777665543 3 4789999999999999999999986 999889988733 333 344433337899999999
Q ss_pred cccccccCCC--cc-----EEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 82 ASRGLDFNKA--VD-----WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 82 aaRGLD~~p~--Vd-----~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|+||.||..+ |. +||....|.+...--|-.||+||-|.+|.+.+|++-.+.
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 9999998322 22 899999999999999999999999999999999987765
No 115
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.40 E-value=1.7e-06 Score=98.89 Aligned_cols=132 Identities=17% Similarity=0.290 Sum_probs=101.8
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHhc-----------------------------CC------CCceEeecCCCC
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKL-----------------------------RP------GIPLMCLYGRMK 58 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l-----------------------------~~------gi~v~~LHG~ms 58 (454)
.++.....+++||||.|++.+-..+..++.. .| -..+..+|.||+
T Consensus 539 KVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~ 618 (1674)
T KOG0951|consen 539 KVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN 618 (1674)
T ss_pred HHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC
Confidence 4555555789999999998887777666511 01 234678999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----cCC------CCChhHHHHHHhccccCC--CCceEEE
Q 012877 59 QDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VDC------PEDVASYIHRVGRTARYN--SGGRSVL 125 (454)
Q Consensus 59 q~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D~------P~~~~~YIhRvGRtgR~g--~~G~ail 125 (454)
..+|..+-+-|.. ..+|||+|--+++|+++ |+-+++|- ||+ +-++-.-+||.||+||.+ ..|.+|+
T Consensus 619 R~dR~~~EdLf~~g~iqvlvstatlawgvnl-pahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 619 RKDRELVEDLFADGHIQVLVSTATLAWGVNL-PAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred cchHHHHHHHHhcCceeEEEeehhhhhhcCC-CcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 9999999999999 99999999999999999 86444442 554 337889999999999875 6788999
Q ss_pred EeCcchHHHHHHHHHcCCCcc
Q 012877 126 FLTPTEMKMLEKLREAKIPIH 146 (454)
Q Consensus 126 ~l~p~E~~~l~~L~~~~i~i~ 146 (454)
+...+|..+.-.+-...+||.
T Consensus 698 it~~se~qyyls~mn~qLpie 718 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIE 718 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCCh
Confidence 888888866555555566654
No 116
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.38 E-value=1e-06 Score=98.60 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC----------------------------CC---------CceEeec
Q 012877 12 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR----------------------------PG---------IPLMCLY 54 (454)
Q Consensus 12 L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~----------------------------~g---------i~v~~LH 54 (454)
|+..|+...--++||||=|++.|+..+..|..+. |. -.+.++|
T Consensus 558 lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH 637 (1248)
T KOG0947|consen 558 LINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHH 637 (1248)
T ss_pred HHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhc
Confidence 4445555556789999999999998888885431 21 1357899
Q ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCC---------ChhHHHHHHhccccCC--CCce
Q 012877 55 GRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE---------DVASYIHRVGRTARYN--SGGR 122 (454)
Q Consensus 55 G~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~---------~~~~YIhRvGRtgR~g--~~G~ 122 (454)
||+=+--..-+---|+. -..|||||.-+|+|+|. |+ .+||.-.+-. .+-.|+|++|||||-| ..|.
T Consensus 638 ~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM-PA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGT 715 (1248)
T KOG0947|consen 638 GGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM-PA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGT 715 (1248)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC-Cc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCce
Confidence 99988888888888999 88999999999999999 85 4555433322 5889999999999998 5788
Q ss_pred EEEEeCcc--hHHHHHHH
Q 012877 123 SVLFLTPT--EMKMLEKL 138 (454)
Q Consensus 123 ail~l~p~--E~~~l~~L 138 (454)
+|++.... +..-++.+
T Consensus 716 Vii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 716 VIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred EEEEecCCCCCHHHHhhH
Confidence 88887654 33444444
No 117
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.36 E-value=6.6e-07 Score=96.95 Aligned_cols=121 Identities=23% Similarity=0.359 Sum_probs=93.4
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhc-------CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCC
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKL-------RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 90 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l-------~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p 90 (454)
.+.+-+|||..-...++...+.|.++ .+.+-+..+|+.+++..+..|++---. ...|++||++|.-.|.| +
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI-d 549 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI-D 549 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee-c
Confidence 34678999999888877766666553 235678899999999999888776655 57899999999999999 9
Q ss_pred CccEEEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcCC
Q 012877 91 AVDWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKI 143 (454)
Q Consensus 91 ~Vd~VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~i 143 (454)
+|.+||.-+. |-+-++-.||+||+||.| +|.|+-+++.. .|...|+...+
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~--aY~~eLE~~t~ 617 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW--AYEHELEEMTV 617 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh--hhhhhhccCCC
Confidence 9999997443 335667789999999996 79999888743 34444544433
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.35 E-value=2.6e-06 Score=97.27 Aligned_cols=117 Identities=25% Similarity=0.306 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHhcC----------------CCcEEEEeCChHHHHHHHHHH-HhcCCCCceEeecCCCCHHHHHHHHHH
Q 012877 6 EQKLDMLWSFIKAHL----------------NSKILVFLTSCKQVKYVFEAF-KKLRPGIPLMCLYGRMKQDRRMAIYAQ 68 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~----------------~~KiIVF~sS~k~v~~l~~~L-~~l~~gi~v~~LHG~msq~~R~~il~~ 68 (454)
.-|+..|-.+|..+. +.++||||.-....+.+-.-| +...|.+..+.|.|..++.+|.++..+
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 358888888886532 468999999999998887655 445577788899999999999999999
Q ss_pred Hhc--CCcE-EEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceE
Q 012877 69 FCE--KRSV-LFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 123 (454)
Q Consensus 69 F~~--~~~V-LVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a 123 (454)
|++ .++| |++|-|.+-|||+ .+.|.||.++--|||..=.|.+-||-|.|++..+
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNL-TGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNL-TGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred hcCCCceeEEEEeeecccccccc-CCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 999 5555 5788999999999 9999999999999999999999999999987654
No 119
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.28 E-value=5.3e-06 Score=93.42 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=101.1
Q ss_pred hHHHHHHHHH-Hh--cCCC--cEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEe
Q 012877 7 QKLDMLWSFI-KA--HLNS--KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFC 78 (454)
Q Consensus 7 ~Kl~~L~~~L-k~--~~~~--KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVa 78 (454)
.|+..|..+| .. ..+. ++|||+......+-+...|... ++..+.++|+++...|..++..|.. ...+|++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls 769 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLS 769 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEE
Confidence 6778887777 22 2355 9999999999999999999887 5889999999999999999999998 3456778
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEE
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 126 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~ 126 (454)
|-+++.||++ -..++||.||+.|++....|...|+-|.|+...+.++
T Consensus 770 ~kagg~glnL-t~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 770 LKAGGLGLNL-TGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ecccccceee-cccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 8899999999 8999999999999999999999999999987655443
No 120
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.28 E-value=1.3e-06 Score=98.96 Aligned_cols=122 Identities=19% Similarity=0.315 Sum_probs=96.7
Q ss_pred HHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhcC---C--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 9 LDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLR---P--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 9 l~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l~---~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
.+++..++.. ...+.+|||.+....+..+++.|.... + .+-+..+|+.|+..++..++..-.. ...|++|
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIla 476 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILA 476 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhh
Confidence 4444444432 336789999999999999999986532 2 3678899999999999999888777 6799999
Q ss_pred ccccccccccCCCccEEEe--------cCCCCC----------hhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 79 TDVASRGLDFNKAVDWVVQ--------VDCPED----------VASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq--------~D~P~~----------~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|++|+-.|-| ++|-+||. ||+-.+ -..-.||.||+||. ..|.|+-+++....
T Consensus 477 TNIAETSITI-dDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 477 TNIAETSITI-DDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhhHhhcccc-cCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 9999999999 99999997 554433 33446999999999 78999999886543
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.23 E-value=1e-05 Score=92.52 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=76.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc--CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCcc--E
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVD--W 94 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l--~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd--~ 94 (454)
.++++||||+|....+.++..|... ..++++. ..+.. ..|..++++|+. +..|||+|+++++|||| |+.. +
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~-~g~~l~~ 748 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDF-PGNGLVC 748 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeeccccc-CCCceEE
Confidence 3568999999999999999999752 1244433 33333 478899999999 89999999999999999 7766 5
Q ss_pred EEecCCCC----Ch--------------------------hHHHHHHhccccCCCCceEEEEeCc
Q 012877 95 VVQVDCPE----DV--------------------------ASYIHRVGRTARYNSGGRSVLFLTP 129 (454)
Q Consensus 95 VIq~D~P~----~~--------------------------~~YIhRvGRtgR~g~~G~ail~l~p 129 (454)
||...+|. ++ ..+.|-+||.=|.....-+++++.+
T Consensus 749 viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 749 LVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 66666664 21 2235777888887654334445444
No 122
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=6.7e-06 Score=93.75 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=101.8
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
...+|+..+..-+... .+.|+||-+.|+...+.+...|... |++.-+|+......+ .+|+.+-.....|-|||+.
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h~~E-AeIVA~AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLHQKE-AEIVAEAGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccchhhH-HHHHHhcCCCCcEEEeccC
Confidence 3467888887766543 4889999999999999999999986 899888888755322 2344443337899999999
Q ss_pred cccccccCC--Cc-----cEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 82 ASRGLDFNK--AV-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 82 aaRGLD~~p--~V-----d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|+||.||.- .| =+||-...|.|...--|-.||+||-|.+|.+-+|++-.+.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999921 12 3899999999999999999999999999999999887654
No 123
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=2.3e-06 Score=93.08 Aligned_cols=108 Identities=21% Similarity=0.420 Sum_probs=85.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh----cC--C--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKK----LR--P--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~----l~--~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~ 91 (454)
.+-+|||+.-...++..+..+.. +. | ++.++.+++.|++.-+..+++.--. ...|+|||++|+-.|.+ |+
T Consensus 563 ~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi-~g 641 (1042)
T KOG0924|consen 563 PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI-PG 641 (1042)
T ss_pred CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee-cc
Confidence 46799999876665555444433 31 3 6789999999999988888776666 67899999999999999 99
Q ss_pred ccEEEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 92 VDWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 92 Vd~VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
|.+||..+. |-+-..--||.||+||.| +|.|+-+++..
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999998664 445666679999999885 78999888764
No 124
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.16 E-value=1e-05 Score=92.01 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--C-CcEEEecc
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--K-RSVLFCTD 80 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~-~~VLVaTD 80 (454)
..||..|.-+|+.. .+.++|||+...+..+-|-..|... |+..+.|.|..+-++|+..+++|+. . .+.+++|-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyH--gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYH--GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhc--ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 34666666666543 4789999999999998888888765 8999999999999999999999998 3 36788999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCc--eEEEEeCcc--hHHHHHHH
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG--RSVLFLTPT--EMKMLEKL 138 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G--~ail~l~p~--E~~~l~~L 138 (454)
..+-|||+ -+.|.||.||.-||+.---|.--|+-|.|+.. ..+-|+... |..+|+.-
T Consensus 1337 SggvGiNL-tgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1337 SGGVGINL-TGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCcccccc-ccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 99999999 99999999999998765544444444444332 344445443 33455443
No 125
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.15 E-value=1.8e-05 Score=89.59 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=91.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC----------CC-----------CceEeecCCCCHHHHHHHHHHHhc-CCcEEE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR----------PG-----------IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 77 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~----------~g-----------i~v~~LHG~msq~~R~~il~~F~~-~~~VLV 77 (454)
.+.+++|||.|+..+-..+..|.... |+ ..+...|+||...+|.-+-..|.. ...||+
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 36789999999988877777776531 11 235678999999999999999999 899999
Q ss_pred eccccccccccCCCccEEEecCCC-----C------ChhHHHHHHhccccCC--CCceEEEEeCcchHHHHHHH
Q 012877 78 CTDVASRGLDFNKAVDWVVQVDCP-----E------DVASYIHRVGRTARYN--SGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 78 aTDvaaRGLD~~p~Vd~VIq~D~P-----~------~~~~YIhRvGRtgR~g--~~G~ail~l~p~E~~~l~~L 138 (454)
||.-++.|+++ |+ .+||..+-+ . ..-.-+|..|||||.+ ..|.++++.+..-......|
T Consensus 428 cTaTLAwGVNL-PA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 428 CTATLAWGVNL-PA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred ecceeeeccCC-cc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999 74 666654433 2 3566799999999974 78999998887766433333
No 126
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.10 E-value=1.6e-05 Score=87.89 Aligned_cols=138 Identities=15% Similarity=0.212 Sum_probs=110.5
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C-C-cEEEecc
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K-R-SVLFCTD 80 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~-~-~VLVaTD 80 (454)
..|+..|..+|.+. .+.++|||.--....+-|--.|..+ ++....|.|...-..|+.++..|.. + . .+|++|-
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTK 837 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTK 837 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeec
Confidence 35777777777653 3689999998888888888888887 8999999999999999999999999 3 3 6789999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCc--eEEEEeCcchH-HHHHHHHHcCCCcc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGG--RSVLFLTPTEM-KMLEKLREAKIPIH 146 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G--~ail~l~p~E~-~~l~~L~~~~i~i~ 146 (454)
+.+-|||+ ...++||.|||-.+|-.=.|.--||-|.|+.- .++-+++.+.. ..+..|...++.+.
T Consensus 838 AGG~GINL-t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le 905 (941)
T KOG0389|consen 838 AGGFGINL-TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALE 905 (941)
T ss_pred cCcceecc-cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhh
Confidence 99999999 99999999999998877777777777777654 45556776644 45556665555443
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.09 E-value=1.6e-05 Score=90.07 Aligned_cols=126 Identities=23% Similarity=0.241 Sum_probs=100.3
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
...+|...+..-+... .+.++||-+.|....+.+...|... |++.-+|+...... -..|+.+--....|.|||+.
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~--gi~h~VLNAk~~~~-EA~IIa~AG~~GaVTIATNM 506 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKE--GIEHKVLNAKYHEK-EAEIIAQAGRPGALTIATNM 506 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHc--CCcHHHhccccchh-HHHHHHcCCCCCcEEEeccC
Confidence 3467888887777543 4889999999999999999999987 89888888874422 22344433337899999999
Q ss_pred cccccccCCC-------------------------------c-----cEEEecCCCCChhHHHHHHhccccCCCCceEEE
Q 012877 82 ASRGLDFNKA-------------------------------V-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 125 (454)
Q Consensus 82 aaRGLD~~p~-------------------------------V-----d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail 125 (454)
|+||.||.-+ | =+||-...|.|..-=-|-.||+||-|.+|.+-+
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 9999999211 1 188999999999999999999999999999999
Q ss_pred EeCcchH
Q 012877 126 FLTPTEM 132 (454)
Q Consensus 126 ~l~p~E~ 132 (454)
|++-.+.
T Consensus 587 ~lSlED~ 593 (913)
T PRK13103 587 YLSLEDS 593 (913)
T ss_pred EEEcCcH
Confidence 9987654
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.08 E-value=2.2e-05 Score=87.82 Aligned_cols=116 Identities=20% Similarity=0.314 Sum_probs=92.7
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHH--HHHHHHHHhc-CCcEEEeccccccccccCCCccEEEec
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDR--RMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~--R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
+..|+++.. -++.+.+.|.+++|+.+++.+-++..... -...+..|.+ +.+|||.|.+++-|.|| |+|++|.-.
T Consensus 483 s~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~f-p~vtLVgvl 559 (730)
T COG1198 483 SEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDF-PNVTLVGVL 559 (730)
T ss_pred CCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCc-ccceEEEEE
Confidence 446777655 36889999999999999999999876544 4578999999 99999999999999999 999998765
Q ss_pred CCCC------------ChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 99 DCPE------------DVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 99 D~P~------------~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
|.-. ....|.|-.||+||.+..|.+++-....+...++.+..
T Consensus 560 ~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 560 DADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred echhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 5422 35567888999999999999988776666555554433
No 129
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.07 E-value=4.3e-06 Score=91.78 Aligned_cols=111 Identities=25% Similarity=0.244 Sum_probs=85.5
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcC----------------------------CCC---------ceEeecCCCCHH
Q 012877 18 AHLNSKILVFLTSCKQVKYVFEAFKKLR----------------------------PGI---------PLMCLYGRMKQD 60 (454)
Q Consensus 18 ~~~~~KiIVF~sS~k~v~~l~~~L~~l~----------------------------~gi---------~v~~LHG~msq~ 60 (454)
.....++|||+=|++.|+.++-.+.++. |.+ .+..+|||+=+-
T Consensus 380 ~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPI 459 (1041)
T KOG0948|consen 380 ERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPI 459 (1041)
T ss_pred hhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHH
Confidence 4556799999999999998887775541 211 246789999887
Q ss_pred HHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCC---------CChhHHHHHHhccccCCC--CceEEEEeC
Q 012877 61 RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCP---------EDVASYIHRVGRTARYNS--GGRSVLFLT 128 (454)
Q Consensus 61 ~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P---------~~~~~YIhRvGRtgR~g~--~G~ail~l~ 128 (454)
-..-|---|.. -..|||||.-++.|||. |+ ..||....- -+.-.|||+.||+||-|. .|.+|+++.
T Consensus 460 lKE~IEILFqEGLvKvLFATETFsiGLNM-PA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 460 LKEVIEILFQEGLVKVLFATETFSIGLNM-PA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred HHHHHHHHHhccHHHHHHhhhhhhhccCC-cc-eeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 77777777888 77999999999999999 85 445543321 157789999999999984 789999887
Q ss_pred cc
Q 012877 129 PT 130 (454)
Q Consensus 129 p~ 130 (454)
..
T Consensus 538 ek 539 (1041)
T KOG0948|consen 538 EK 539 (1041)
T ss_pred Cc
Confidence 54
No 130
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.05 E-value=1e-05 Score=88.52 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCcEEEecccc
Q 012877 7 QKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVA 82 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~VLVaTDva 82 (454)
.|+..|-.+|... .+.++|+|+...+..+.+-++|... ++..+.|.|.....+|..++.+|.. ..-.|++|-+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr--~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR--GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh--ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 4555666666543 4789999999999999999999875 8999999999999999999999999 45678999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCce--EEEEeCcc--hHHHHHHH
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGR--SVLFLTPT--EMKMLEKL 138 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~--ail~l~p~--E~~~l~~L 138 (454)
+-||++ .+.|.||.||.-|+|..-.|.+.|+-|.|+..- ++-+++.. |+.++.+-
T Consensus 1106 GLGINL-TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA 1164 (1185)
T KOG0388|consen 1106 GLGINL-TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERA 1164 (1185)
T ss_pred cccccc-cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHh
Confidence 999999 999999999999999999999999999997654 44444433 34555543
No 131
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.02 E-value=2.5e-05 Score=72.26 Aligned_cols=111 Identities=24% Similarity=0.419 Sum_probs=72.8
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc--ccccccc
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD--VASRGLD 87 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD--vaaRGLD 87 (454)
..+++.. ++.+||||+|....+.++..+..... ++.++.- + ...+..+++.|.. ...||+|+. .+..|||
T Consensus 2 ~~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD 76 (167)
T PF13307_consen 2 LELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEGAILLAVAGGSFSEGID 76 (167)
T ss_dssp HHHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS-
T ss_pred hHHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccCeEEEEEecccEEEeec
Confidence 4555444 47899999999999999998876421 3333322 2 4467889999999 889999998 9999999
Q ss_pred cCCC--ccEEEecCCCCC-h-----------------------------hHHHHHHhccccCCCCceEEEEeCc
Q 012877 88 FNKA--VDWVVQVDCPED-V-----------------------------ASYIHRVGRTARYNSGGRSVLFLTP 129 (454)
Q Consensus 88 ~~p~--Vd~VIq~D~P~~-~-----------------------------~~YIhRvGRtgR~g~~G~ail~l~p 129 (454)
| |+ +.+||...+|.. + ....|-+||+-|....--+++++.+
T Consensus 77 ~-~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 77 F-PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp --ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred C-CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9 64 889999998841 1 1114678999888765444455544
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.01 E-value=5e-05 Score=85.81 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=63.9
Q ss_pred cchHHHHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH-HHHHHHHHHHhcCCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~-~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq-~~R~~il~~F~~~~~VLVaTDv 81 (454)
..+|...+..-+.. | .+.++||-|.|....+.+...|... |++..+|++.-.+ ..=..|+.+-.....|.|||+.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIATNM 483 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY--RLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNM 483 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc--CCccceeeCCCccchhHHHHHHhcCCCCcEEEeccc
Confidence 45677777665533 3 4789999999999999999999987 9999999997432 2333455553338899999999
Q ss_pred cccccccC
Q 012877 82 ASRGLDFN 89 (454)
Q Consensus 82 aaRGLD~~ 89 (454)
|+||.||.
T Consensus 484 AGRGTDI~ 491 (870)
T CHL00122 484 AGRGTDII 491 (870)
T ss_pred cCCCcCee
Confidence 99999983
No 133
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.01 E-value=4.8e-05 Score=86.33 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeCC---hHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec----c
Q 012877 9 LDMLWSFIKAHLNSKILVFLTS---CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT----D 80 (454)
Q Consensus 9 l~~L~~~Lk~~~~~KiIVF~sS---~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT----D 80 (454)
+..+..+++... .-.|||+++ ...++.+++.|+.. |+.+..+|+. ....++.|.. +.++||.+ .
T Consensus 324 ~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG 395 (1187)
T COG1110 324 LEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSH--GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYG 395 (1187)
T ss_pred HHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeecc-----chhhhhhhccCceeEEEEeccccc
Confidence 444566665544 458999999 88999999999987 9999999984 3678999999 99988764 6
Q ss_pred ccccccccCCCccEEEecCCC
Q 012877 81 VASRGLDFNKAVDWVVQVDCP 101 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P 101 (454)
++-||||+|..+.++|.|++|
T Consensus 396 ~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 396 VLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ceeecCCchhheeEEEEecCC
Confidence 789999997789999999999
No 134
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.98 E-value=1.6e-05 Score=89.03 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=104.9
Q ss_pred cCcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhc--------------------CCCCceEeecCCCCHH
Q 012877 3 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKL--------------------RPGIPLMCLYGRMKQD 60 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l--------------------~~gi~v~~LHG~msq~ 60 (454)
+....|+-+|+.+|+.+ .+.|+|||..|..+.+.+-..|... ..|...+.|.|.....
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 34567899999999865 4889999999998888777777543 1356678899999999
Q ss_pred HHHHHHHHHhc--CC---cEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEE
Q 012877 61 RRMAIYAQFCE--KR---SVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLF 126 (454)
Q Consensus 61 ~R~~il~~F~~--~~---~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~ 126 (454)
.|......|+. +. -.||+|-+.+-|||+ -+.+-||.||..|+|.--+|-+=|+-|+|+.-.++++
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNL-vAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINL-VAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccce-eecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999999998 22 479999999999999 9999999999999999999999999999987766654
No 135
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.4e-05 Score=86.62 Aligned_cols=78 Identities=23% Similarity=0.441 Sum_probs=59.8
Q ss_pred eEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEec--------CCCCChhH----------HHHH
Q 012877 50 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV--------DCPEDVAS----------YIHR 110 (454)
Q Consensus 50 v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~--------D~P~~~~~----------YIhR 110 (454)
|+.|++=++..++++++..--. ..-|+|||+||+-.|.| |+|.+||.. |--..+.. --||
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI-PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQR 685 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI-PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQR 685 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc-CCeeEEEeccchhhhccccccCceeEEEEeeeccccchh
Confidence 4566677777777777666666 55799999999999999 999999974 43333333 3599
Q ss_pred HhccccCCCCceEEEEeCc
Q 012877 111 VGRTARYNSGGRSVLFLTP 129 (454)
Q Consensus 111 vGRtgR~g~~G~ail~l~p 129 (454)
+||+||.| .|.|+-++..
T Consensus 686 AGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 686 AGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccccCCCC-CCceeehhhh
Confidence 99999996 6899887754
No 136
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.84 E-value=0.00011 Score=78.19 Aligned_cols=107 Identities=24% Similarity=0.334 Sum_probs=84.7
Q ss_pred cchHHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCcEEEecc
Q 012877 5 LEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTD 80 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~VLVaTD 80 (454)
.+.|+...--+|+-|. +.|+|||..+.-....++--|.+ ..++|..+|.+|+.|++.|+. ..+.+|-+-
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 3567777666676554 78999998876655544443322 368999999999999999998 778999999
Q ss_pred ccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCC
Q 012877 81 VASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNS 119 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~ 119 (454)
|+.-.+|+ |..+++||..... +-.+-.||.||.-|+.+
T Consensus 598 VgDtSiDL-PEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 598 VGDTSIDL-PEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred ccCccccC-CcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 99999999 9999999987654 55667899999998853
No 137
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.66 E-value=0.00017 Score=80.70 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=80.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCc---eEeecCCCCHHHHHHHHHHHhc---CCcEEEeccccccccccCCCccE
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIP---LMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDW 94 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~---v~~LHG~msq~~R~~il~~F~~---~~~VLVaTDvaaRGLD~~p~Vd~ 94 (454)
..|+||||.+..+++++.+.|...+|... +..+.|.-.+.++ .+..|.. -..|.|+.|++.-|||+ |.|..
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDv-pev~n 502 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDV-PEVVN 502 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCc-hheee
Confidence 46999999999999999999999887543 7778887665443 3556655 45899999999999999 89999
Q ss_pred EEecCCCCChhHHHHHHhccccC
Q 012877 95 VVQVDCPEDVASYIHRVGRTARY 117 (454)
Q Consensus 95 VIq~D~P~~~~~YIhRvGRtgR~ 117 (454)
+|.+-.-.|-.-|-|++||.-|.
T Consensus 503 lVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 503 LVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999999886
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.66 E-value=0.00014 Score=77.18 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHhc------CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCc-EEE
Q 012877 7 QKLDMLWSFIKAH------LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLF 77 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~------~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~-VLV 77 (454)
-|+.....+|-.| .+.|++||+.-....+.+...+++. ++....+.|..+...|....+.|+. ... .++
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvl 549 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVL 549 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEE
Confidence 3555566655553 3679999999999999999999986 8999999999999999999999998 333 355
Q ss_pred eccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceE
Q 012877 78 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS 123 (454)
Q Consensus 78 aTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a 123 (454)
+-.+++.||+| .+.+.||...+|||+.-.+|--.|+-|.|+...+
T Consensus 550 sItA~gvGLt~-tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 550 SITAAGVGLTL-TAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSV 594 (689)
T ss_pred EEeecccceee-eccceEEEEEecCCCceEEechhhhhhcccccee
Confidence 66789999999 9999999999999999999988888888876543
No 139
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.63 E-value=0.00071 Score=75.69 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=75.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCC---CceEeecCCCCHH---------------------HHHHHHHHHhc--CCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPG---IPLMCLYGRMKQD---------------------RRMAIYAQFCE--KRS 74 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~g---i~v~~LHG~msq~---------------------~R~~il~~F~~--~~~ 74 (454)
+.|++|||.++..|..+++.|....|. ...+.++|..+.. ....++.+|+. ...
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 489999999999999999999887553 3556677654432 12468899987 679
Q ss_pred EEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccC
Q 012877 75 VLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY 117 (454)
Q Consensus 75 VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~ 117 (454)
|||++|.+..|.|. |.+++++-.-+-.+ -.++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDa-P~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDA-PILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCC-CccceEEEeccccc-cHHHHHHHHhccc
Confidence 99999999999999 98888777665554 4689999999994
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.62 E-value=0.00046 Score=78.31 Aligned_cols=82 Identities=26% Similarity=0.275 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH-HHHHHHHHHHhcCCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~-~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq-~~R~~il~~F~~~~~VLVaTDv 81 (454)
...|...+..-+.. | .+.|+||-|.|....+.+...|... |++..+|+....+ ..=..|+.+-.....|-|||+.
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~--gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTIATNM 498 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQ--GIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHc--CCchheeeCCCcchHhHHHHHHhcCCCCcEEEeccC
Confidence 46788888766653 3 4889999999999999999999987 9999999997333 3334455553337899999999
Q ss_pred ccccccc
Q 012877 82 ASRGLDF 88 (454)
Q Consensus 82 aaRGLD~ 88 (454)
|+||.||
T Consensus 499 AGRGTDI 505 (939)
T PRK12902 499 AGRGTDI 505 (939)
T ss_pred CCCCcCE
Confidence 9999998
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.56 E-value=0.0011 Score=76.82 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=61.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC--ccE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA--VDW 94 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~--Vd~ 94 (454)
.++++||||+|....+.++..|....+ ++.+.. . +++...|..++++|+. ...||++|..+.+|||| |+ +.+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~-pg~~l~~ 827 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDI-PGDELSC 827 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCcccc-CCCceEE
Confidence 456899999999999999999976422 233222 2 3333457889999998 88999999999999999 64 588
Q ss_pred EEecCCCC
Q 012877 95 VVQVDCPE 102 (454)
Q Consensus 95 VIq~D~P~ 102 (454)
||...+|.
T Consensus 828 viI~kLPF 835 (928)
T PRK08074 828 LVIVRLPF 835 (928)
T ss_pred EEEecCCC
Confidence 88877664
No 142
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.51 E-value=0.00017 Score=81.52 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=69.4
Q ss_pred eEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecC--CCCChhHHHHHHhccccCC--CCceEE
Q 012877 50 LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD--CPEDVASYIHRVGRTARYN--SGGRSV 124 (454)
Q Consensus 50 v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D--~P~~~~~YIhRvGRtgR~g--~~G~ai 124 (454)
+...|++|+...|..+---|+. ...|||||..++-|||. | |..||..+ +--++-.|-|++|||||-| .-|.++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNM-P-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINM-P-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCC-C-ceeEEEeccccccCchhHHhhhccccccccccccceE
Confidence 4568999999999999999999 99999999999999999 7 77777654 3447889999999999987 578888
Q ss_pred EEeCcchH
Q 012877 125 LFLTPTEM 132 (454)
Q Consensus 125 l~l~p~E~ 132 (454)
++--|...
T Consensus 1043 FmgiP~~k 1050 (1330)
T KOG0949|consen 1043 FMGIPRQK 1050 (1330)
T ss_pred EEeCcHHH
Confidence 88777654
No 143
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.47 E-value=0.00028 Score=80.01 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=102.5
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CC---cEEE
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLF 77 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~---~VLV 77 (454)
....|+.+|-.+|-+. .+++++.||........+-..|.-. ++..+-|-|..+..+|-..+..|+. .+ ..|+
T Consensus 707 R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~--~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fll 784 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR--EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLL 784 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh--hhheeeecCCcchhhHHHHHHHhcCCCCceeeeee
Confidence 3456777877777543 3789999998877777777777643 8899999999999999999999998 43 5788
Q ss_pred eccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCc
Q 012877 78 CTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTP 129 (454)
Q Consensus 78 aTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p 129 (454)
+|-+.+.|+|+ ...|.||.||.-|++-...|+.-|+-|.|+.-.+-++..-
T Consensus 785 stragglglNl-Qtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 785 STRAGGLGLNL-QTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred eecccccccch-hhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999 9999999999999999999999999999987665555443
No 144
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00036 Score=80.42 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=88.0
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC--------------------------CCCc-------------eEee
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--------------------------PGIP-------------LMCL 53 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~--------------------------~gi~-------------v~~L 53 (454)
...|......++|+|+=|+..|+.....+..+. -+++ +...
T Consensus 371 v~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavH 450 (1041)
T COG4581 371 VNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVH 450 (1041)
T ss_pred HhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhh
Confidence 444444556789999999888887776664210 0121 3478
Q ss_pred cCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCC---------CCChhHHHHHHhccccCCC--Cc
Q 012877 54 YGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDC---------PEDVASYIHRVGRTARYNS--GG 121 (454)
Q Consensus 54 HG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~---------P~~~~~YIhRvGRtgR~g~--~G 121 (454)
|+||=+.-+..+-.-|+. -..|+|||.+++.|||. |. ..||.+.+ +-++..|+|..||+||.|- .|
T Consensus 451 H~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm-Pa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G 528 (1041)
T COG4581 451 HAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM-PA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLG 528 (1041)
T ss_pred ccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC-cc-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccc
Confidence 999999999999999999 88999999999999999 74 55554333 3478999999999999985 68
Q ss_pred eEEEEeCcc
Q 012877 122 RSVLFLTPT 130 (454)
Q Consensus 122 ~ail~l~p~ 130 (454)
.+|++-.+.
T Consensus 529 ~vI~~~~~~ 537 (1041)
T COG4581 529 TVIVIEPPF 537 (1041)
T ss_pred eEEEecCCC
Confidence 888875544
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0014 Score=72.74 Aligned_cols=88 Identities=25% Similarity=0.277 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CC-cEEEecccccccc
Q 012877 9 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR-SVLFCTDVASRGL 86 (454)
Q Consensus 9 l~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~-~VLVaTDvaaRGL 86 (454)
...|..++...++ ++||||+|....+.+++.|...... .....+|..+ +..+++.|.. .. .++|+|..+++||
T Consensus 468 ~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGV 542 (654)
T COG1199 468 AAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGV 542 (654)
T ss_pred HHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcc
Confidence 4455666655554 8999999999999999999875211 2345566554 4489999999 44 8999999999999
Q ss_pred ccCCC--ccEEEecCCCC
Q 012877 87 DFNKA--VDWVVQVDCPE 102 (454)
Q Consensus 87 D~~p~--Vd~VIq~D~P~ 102 (454)
|| |+ ..+||...+|.
T Consensus 543 D~-~g~~l~~vvI~~lPf 559 (654)
T COG1199 543 DF-PGDALRLVVIVGLPF 559 (654)
T ss_pred cC-CCCCeeEEEEEecCC
Confidence 99 64 57888888775
No 146
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.25 E-value=0.0011 Score=70.77 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=102.0
Q ss_pred chHHHHHHH---HHHhcC-CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCc-EEEe
Q 012877 6 EQKLDMLWS---FIKAHL-NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFC 78 (454)
Q Consensus 6 ~~Kl~~L~~---~Lk~~~-~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~-VLVa 78 (454)
..|+..|.. ||.... .-|.|||..-....+.+.=.|.+. |+.++.|-|+|++..|..+++.|.+ .+. .|++
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvS 696 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVS 696 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEE
Confidence 457777765 343333 458999998888888888888886 9999999999999999999999999 554 4567
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCC--CceEEEEeCcchH-HHHHHHHHcC
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS--GGRSVLFLTPTEM-KMLEKLREAK 142 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~--~G~ail~l~p~E~-~~l~~L~~~~ 142 (454)
--+.+-.|++ .....|..+|+.|++..--|-..|.-|.|+ +=.++-|+..... ..+-.|++++
T Consensus 697 LkAGGVALNL-teASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKK 762 (791)
T KOG1002|consen 697 LKAGGVALNL-TEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKK 762 (791)
T ss_pred eccCceEeee-chhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHH
Confidence 7888888999 889999999999999887777777777775 3455666655432 3333444443
No 147
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.17 E-value=0.0098 Score=68.22 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCC-CccEEEe
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK-AVDWVVQ 97 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p-~Vd~VIq 97 (454)
.+++++|+|+|....+.+++.|... ..++ ...|.-. .|..++++|+. ...||++|+.+.+|||+|+ ....||.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEE
Confidence 4678999999999999999999764 4555 4445322 25668999999 8899999999999999932 3555666
Q ss_pred cCCC
Q 012877 98 VDCP 101 (454)
Q Consensus 98 ~D~P 101 (454)
..+|
T Consensus 721 ~kLP 724 (820)
T PRK07246 721 TRLP 724 (820)
T ss_pred ecCC
Confidence 6655
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.13 E-value=0.0059 Score=68.78 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=58.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-----CCcEEEeccccccccccCCC--cc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCTDVASRGLDFNKA--VD 93 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-----~~~VLVaTDvaaRGLD~~p~--Vd 93 (454)
.+.+||||+|....+.++..|.... +.++ ..+|.. .|..+++.|++ ...||++|..+..|||| |+ +.
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~-~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~-pGd~l~ 607 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL-RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL-PGDYLT 607 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc-CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccC-CCCceE
Confidence 4458999999999999999987532 3443 446643 46778877764 56799999999999999 65 78
Q ss_pred EEEecCCCC
Q 012877 94 WVVQVDCPE 102 (454)
Q Consensus 94 ~VIq~D~P~ 102 (454)
+||...+|.
T Consensus 608 ~vII~kLPF 616 (697)
T PRK11747 608 QVIITKIPF 616 (697)
T ss_pred EEEEEcCCC
Confidence 999888774
No 149
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.08 E-value=0.0026 Score=72.58 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHHh-----------cCCCcEEEEeCChHHHHHHHHHHHh
Q 012877 5 LEQKLDMLWSFIKA-----------HLNSKILVFLTSCKQVKYVFEAFKK 43 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~-----------~~~~KiIVF~sS~k~v~~l~~~L~~ 43 (454)
..-|...|..+|+. ..++++||||+...+|..|.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45688888888843 3357899999999999999988855
No 150
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.03 E-value=0.0021 Score=68.56 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=79.6
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHh----cCC---CCceEeecCCCCHHHHHHHHHHHh----c--CCcEEEecc
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKK----LRP---GIPLMCLYGRMKQDRRMAIYAQFC----E--KRSVLFCTD 80 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~----l~~---gi~v~~LHG~msq~~R~~il~~F~----~--~~~VLVaTD 80 (454)
.+-.....+-++||......++..++.+.. +.+ .+.++.||- .+...+++--. . ...|+|+|.
T Consensus 246 qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvstn 321 (699)
T KOG0925|consen 246 QIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVSTN 321 (699)
T ss_pred HHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEEec
Confidence 333344578899999998888777776653 222 356788882 22333332221 1 457999999
Q ss_pred ccccccccCCCccEEEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 81 VASRGLDFNKAVDWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
++.-.+-+ ++|-+||.-++ |-+-.+--||.||+||. ++|.|+-+++..
T Consensus 322 iaetslti-dgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 322 IAETSLTI-DGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred chheeeee-ccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999 99999997554 55777788999999887 789999988754
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.01 E-value=0.0031 Score=69.68 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C--Cc-EEEec
Q 012877 7 QKLDMLWSFIKAH---LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RS-VLFCT 79 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~---~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~--~~-VLVaT 79 (454)
-|+..++..+... .+.++||-.-.......+...|+.. |.....+||.....+|+.+++.|.. + .. .|++-
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~--g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKG--GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhC--CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 4666666666543 3567777766677667777788776 8889999999999999999999998 3 34 45667
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEE
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 125 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail 125 (454)
.+.+-|||+ -+.+|+|-+|+.|++.---|.+-|.-|+|++-.+++
T Consensus 807 tAGGVGLNL-~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 807 TAGGVGLNL-IGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ccCcceeee-cccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 888899999 899999999999999999999999999998766654
No 152
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.002 Score=72.81 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=95.6
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
....|+..++..|... .+.|+||-+.+....+.+..+|.+. |++-.+|...-. .|..-+-.+.. ...|-|||+
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~--~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATN 485 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA--GIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATN 485 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc--CCCceeeccccH--HHHHHHHhhcCCCCccccccc
Confidence 3467888888877643 4889999999999999999999987 888888877755 56666666666 778999999
Q ss_pred ccccccccCCCcc----------EEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 81 VASRGLDFNKAVD----------WVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 81 vaaRGLD~~p~Vd----------~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
.|+||-||.-+-. +||-..--++-.-=-|-.||+||-|-+|.+..|++-.+.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 9999999832222 455555444444444888999999999999888876543
No 153
>COG4889 Predicted helicase [General function prediction only]
Probab=96.95 E-value=0.0014 Score=73.69 Aligned_cols=105 Identities=22% Similarity=0.324 Sum_probs=80.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc-----------CCCC--ceEeecCCCCHHHHHHHHH---HHhc-CCcEEEecccccc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKL-----------RPGI--PLMCLYGRMKQDRRMAIYA---QFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l-----------~~gi--~v~~LHG~msq~~R~~il~---~F~~-~~~VLVaTDvaaR 84 (454)
.+.|-||.+.++...+.+.|.+. ++++ .+-++.|.|+--+|...+. .|.. .+.||--.-++++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 46788998888887777766542 3444 4555669999988854443 2334 6778877888999
Q ss_pred ccccCCCccEEEecCCCCChhHHHHHHhccccCC---CCceEEEEe
Q 012877 85 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN---SGGRSVLFL 127 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g---~~G~ail~l 127 (454)
|+|+ |+.|-||.|++-.+....||-|||+.|-. ..|..|+-+
T Consensus 541 GVDV-PaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 541 GVDV-PALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCc-cccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 9999 99999999999999999999999999863 357666644
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.87 E-value=0.0098 Score=67.02 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=61.7
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC------CCCceEeecCCCCHHHHHHHHHHHhc-----CCcEEEec--
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR------PGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCT-- 79 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~------~gi~v~~LHG~msq~~R~~il~~F~~-----~~~VLVaT-- 79 (454)
..+++.. ++.+||||+|-...+.++..+.... .+.+++. -+. ...++..++++|+. ...||+|+
T Consensus 515 ~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~g 591 (705)
T TIGR00604 515 VEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ETK-DAQETSDALERYKQAVSEGRGAVLLSVAG 591 (705)
T ss_pred HHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eCC-CcchHHHHHHHHHHHHhcCCceEEEEecC
Confidence 3444333 5679999999999999988877530 1123332 222 11467889999965 35799999
Q ss_pred cccccccccCCC--ccEEEecCCCC
Q 012877 80 DVASRGLDFNKA--VDWVVQVDCPE 102 (454)
Q Consensus 80 DvaaRGLD~~p~--Vd~VIq~D~P~ 102 (454)
..+++|||| ++ +.+||.+++|.
T Consensus 592 Gk~sEGIDf-~~~~~r~ViivGlPf 615 (705)
T TIGR00604 592 GKVSEGIDF-CDDLGRAVIMVGIPY 615 (705)
T ss_pred CcccCcccc-CCCCCcEEEEEccCC
Confidence 899999999 64 78999999987
No 155
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=96.49 E-value=0.002 Score=71.64 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=89.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC----C------------CCceEeecCCCCHHHHHHHHHHHhc--CC--cEEEec
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR----P------------GIPLMCLYGRMKQDRRMAIYAQFCE--KR--SVLFCT 79 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~----~------------gi~v~~LHG~msq~~R~~il~~F~~--~~--~VLVaT 79 (454)
.+.++|||..+....+.+-++|.+.. + ....+-+.|..+...|...+++|.. .. -+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 36799999999888888888887652 1 1234567888899999999999998 33 578899
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeC
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 128 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~ 128 (454)
-...-||++ -+.+-+|.|||.|++.--.|.|-|+-|+|+.-.|+++-.
T Consensus 798 rag~lGinL-Isanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 798 RAGSLGINL-ISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccccee-eccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 999999999 788899999999999999999999999998877776543
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.42 E-value=0.013 Score=67.91 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=66.1
Q ss_pred EEEEeCChHHHHHHHHHHHhcC----CCCceEeecCCCCHHHHHHHHHHH---------------------hc------C
Q 012877 24 ILVFLTSCKQVKYVFEAFKKLR----PGIPLMCLYGRMKQDRRMAIYAQF---------------------CE------K 72 (454)
Q Consensus 24 iIVF~sS~k~v~~l~~~L~~l~----~gi~v~~LHG~msq~~R~~il~~F---------------------~~------~ 72 (454)
.+|=+++.+.+-.++..|..+. ..+.+.+||+......|..+-+.. -. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 4566666665555555555442 235688999999877776554332 11 2
Q ss_pred CcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCC
Q 012877 73 RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 119 (454)
Q Consensus 73 ~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~ 119 (454)
..|+|||.|++-|+|+ +.+|+|- -|.++...|||+||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~--dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH--DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc--cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 3799999999999998 6888875 36778899999999999875
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.41 E-value=0.067 Score=57.19 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=96.8
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc--cccccccCCCccE
Q 012877 18 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV--ASRGLDFNKAVDW 94 (454)
Q Consensus 18 ~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv--aaRGLD~~p~Vd~ 94 (454)
......+|||++|--.--.+...|.+. ++....+|--.++.+-..+-..|.. ...||+.|-= .-|=..| .+|..
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i-rGi~~ 373 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI-RGIRH 373 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee-cCCcE
Confidence 445678999999988777788888865 8999999988888888889999999 9999999953 4456778 89999
Q ss_pred EEecCCCCChhHHHHHHhccccCCC------CceEEEEeCcchHHHHHHH
Q 012877 95 VVQVDCPEDVASYIHRVGRTARYNS------GGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 95 VIq~D~P~~~~~YIhRvGRtgR~g~------~G~ail~l~p~E~~~l~~L 138 (454)
||.|.+|..+.-|-.-++-.+.... .+.|.++++.-+.--|+++
T Consensus 374 viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 374 VIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999999888866554433 5788888888887666655
No 158
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.08 E-value=0.06 Score=48.74 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHhc-C-CcEEEeccccccccccCCC--ccEEEecCCCC
Q 012877 57 MKQDRRMAIYAQFCE-K-RSVLFCTDVASRGLDFNKA--VDWVVQVDCPE 102 (454)
Q Consensus 57 msq~~R~~il~~F~~-~-~~VLVaTDvaaRGLD~~p~--Vd~VIq~D~P~ 102 (454)
....+...+++.|.. . ..||++|.-+++|||| |+ +.+||...+|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~-~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDF-PGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceec-CCCCeeEEEEEecCC
Confidence 444467889999998 4 4899999889999999 64 67898888774
No 159
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.64 E-value=0.088 Score=47.71 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=33.6
Q ss_pred HHHHHHHHHhc-CC---cEEEeccc--cccccccCCC--ccEEEecCCCC
Q 012877 61 RRMAIYAQFCE-KR---SVLFCTDV--ASRGLDFNKA--VDWVVQVDCPE 102 (454)
Q Consensus 61 ~R~~il~~F~~-~~---~VLVaTDv--aaRGLD~~p~--Vd~VIq~D~P~ 102 (454)
....++..|+. .. .||+++.- +++|||| |+ +.+||.+.+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~-~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDF-PDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceec-CCCccEEEEEEecCC
Confidence 44788999998 43 79999887 9999999 65 67999988884
No 160
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.49 E-value=0.18 Score=56.40 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-----CCcEEEeccccc
Q 012877 9 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCTDVAS 83 (454)
Q Consensus 9 l~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-----~~~VLVaTDvaa 83 (454)
...+..+|... ++.++|.|+|....+.+++.|.... ..+ +.+.|..+ .+...+++|+. ...|||+|+.+-
T Consensus 459 ~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l-~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 459 SLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGI-PAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhc-CCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 34555666544 4579999999999999999997643 233 34556543 45668889987 368999999999
Q ss_pred ccccc------C---CCccEEEecCCCCCh
Q 012877 84 RGLDF------N---KAVDWVVQVDCPEDV 104 (454)
Q Consensus 84 RGLD~------~---p~Vd~VIq~D~P~~~ 104 (454)
.|||+ | ..+.+||..-+|..+
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 99999 2 358999998888543
No 161
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.27 E-value=0.08 Score=53.36 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=59.4
Q ss_pred HHHHHHHhc-CCcEEEeccccccccccCCC--------ccEEEecCCCCChhHHHHHHhccccCCCC-ceEEEEeC---c
Q 012877 63 MAIYAQFCE-KRSVLFCTDVASRGLDFNKA--------VDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVLFLT---P 129 (454)
Q Consensus 63 ~~il~~F~~-~~~VLVaTDvaaRGLD~~p~--------Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~-G~ail~l~---p 129 (454)
....+.|.+ ...|+|.|++++-||-+ .+ -.+-|-..+||+++..||..|||-|.|+. ...+.++. +
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSl-HAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISL-HADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccch-hccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 356779999 88999999999999998 42 23557789999999999999999999974 44444443 3
Q ss_pred chHHHHHHHHHc
Q 012877 130 TEMKMLEKLREA 141 (454)
Q Consensus 130 ~E~~~l~~L~~~ 141 (454)
.|..|...+..+
T Consensus 130 gE~Rfas~va~r 141 (278)
T PF13871_consen 130 GERRFASTVARR 141 (278)
T ss_pred HHHHHHHHHHHH
Confidence 466666655443
No 162
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.24 E-value=0.076 Score=59.79 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=67.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-cccccccCCCccEE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRGLDFNKAVDWV 95 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-aaRGLD~~p~Vd~V 95 (454)
.+.+++|.++|...+..+++.|+.+.+ |+.+..+||+++..+|..++..... ...|+|+|.. +...+.| .++.+|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~-~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEF-HNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchh-cccceE
Confidence 366899999999999999999888754 5889999999999999999999999 8999999975 4456788 899998
Q ss_pred Ee
Q 012877 96 VQ 97 (454)
Q Consensus 96 Iq 97 (454)
|-
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 85
No 163
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.20 E-value=0.1 Score=58.70 Aligned_cols=92 Identities=12% Similarity=0.216 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc----ccccccccCCCccEEEecCC------CC
Q 012877 33 QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD----VASRGLDFNKAVDWVVQVDC------PE 102 (454)
Q Consensus 33 ~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD----vaaRGLD~~p~Vd~VIq~D~------P~ 102 (454)
-++.+.+.|.+.+|+.++..+-++ .++..|..+.+|||+|. +++ ++++.|+..|. |.
T Consensus 439 Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~~~~~IlVGTqgaepm~~------g~~~lV~ildaD~~L~~pD 505 (665)
T PRK14873 439 GARRTAEELGRAFPGVPVVTSGGD-------QVVDTVDAGPALVVATPGAEPRVE------GGYGAALLLDAWALLGRQD 505 (665)
T ss_pred cHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhccCCCEEEECCCCccccc------CCceEEEEEcchhhhcCCC
Confidence 357888999999999998866443 47888966899999998 555 24555655443 22
Q ss_pred ------ChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 103 ------DVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 103 ------~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
....+.|-+||+||.+..|.+++...|.. ..++.+
T Consensus 506 fRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~-~~~~~l 546 (665)
T PRK14873 506 LRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL-PTVQAL 546 (665)
T ss_pred cChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC-HHHHHH
Confidence 24455788899999999999998865554 344443
No 164
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.07 E-value=0.12 Score=58.27 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 6 EQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
..|..+.+..+.. ..+.++||.++|...+..+++.|+..+ |..+..+||+++..+|..++.+... ...|+|+|..+
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3466555544432 236789999999999999999998865 7889999999999999999999888 88999999744
Q ss_pred ccccccCCCccEEEecCC
Q 012877 83 SRGLDFNKAVDWVVQVDC 100 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~ 100 (454)
.. +.+ .++.+||--+.
T Consensus 252 l~-~p~-~~l~liVvDEe 267 (679)
T PRK05580 252 LF-LPF-KNLGLIIVDEE 267 (679)
T ss_pred hc-ccc-cCCCEEEEECC
Confidence 32 556 68888886553
No 165
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.74 E-value=0.17 Score=55.18 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 6 EQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
..|..+.+.++.. ..+.++||.+++...+..++..|+..+ +..+..+||+++..+|..++.+... ...|+|+|..+
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 4566666555543 236689999999999999999998865 6789999999999999999988888 88999999764
Q ss_pred ccccccCCCccEEEecC
Q 012877 83 SRGLDFNKAVDWVVQVD 99 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D 99 (454)
.. +-+ +++.+||--+
T Consensus 87 lf-~p~-~~l~lIIVDE 101 (505)
T TIGR00595 87 LF-LPF-KNLGLIIVDE 101 (505)
T ss_pred Hc-Ccc-cCCCEEEEEC
Confidence 43 456 7888888544
No 166
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.59 E-value=0.14 Score=57.13 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=66.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc-cccccCCCccEE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-RGLDFNKAVDWV 95 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa-RGLD~~p~Vd~V 95 (454)
.+.+++|-++|...+..+++.|+++++ |+.+..+||+++...|..++..... ...|+|+|...- ..+.| .++.+|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~-~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF-KRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc-cccceE
Confidence 366899999999999999999988765 6899999999999999999999988 899999997644 46788 889988
Q ss_pred Ee
Q 012877 96 VQ 97 (454)
Q Consensus 96 Iq 97 (454)
|-
T Consensus 362 VI 363 (630)
T TIGR00643 362 II 363 (630)
T ss_pred EE
Confidence 85
No 167
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.15 Score=59.05 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC-----CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP-----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~-----gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
-+.++.++.-.+.+.++++.++|.-.|..+++.|.++.+ .+.+. +||.|+..++.+++++|.+ ...|||+|..
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 345566666667789999999999999999999988742 23344 9999999999999999999 9999999976
Q ss_pred c
Q 012877 82 A 82 (454)
Q Consensus 82 a 82 (454)
+
T Consensus 191 F 191 (1187)
T COG1110 191 F 191 (1187)
T ss_pred H
Confidence 4
No 168
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.62 E-value=0.29 Score=55.08 Aligned_cols=94 Identities=16% Similarity=0.048 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
...|...++.++... .+..+||.++....+..+...|+..+++..+..+|++++..+|...+.+... ...|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 356778888888654 3678999999999999999999998754789999999999999999999988 8899999965
Q ss_pred cccccccCCCccEEEecCC
Q 012877 82 ASRGLDFNKAVDWVVQVDC 100 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~ 100 (454)
+. =+-| ++..+||-.+-
T Consensus 250 Av-FaP~-~~LgLIIvdEE 266 (665)
T PRK14873 250 AV-FAPV-EDLGLVAIWDD 266 (665)
T ss_pred eE-Eecc-CCCCEEEEEcC
Confidence 43 3455 56777877664
No 169
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.44 E-value=0.053 Score=65.43 Aligned_cols=94 Identities=19% Similarity=0.314 Sum_probs=74.1
Q ss_pred cEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH-----------HHHHHHHHHHhc-CCcEEEeccccccccccCC
Q 012877 23 KILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ-----------DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 90 (454)
Q Consensus 23 KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq-----------~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p 90 (454)
-.|+||.-...+..+.+.++... -..+..+.|.+.+ -.+.+++..|.. ..++|++|.++..|+|+ +
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~-~ 371 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIF-SNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV-P 371 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhh-ccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch-h
Confidence 46899988888877777776653 1222234443221 135788999999 99999999999999999 9
Q ss_pred CccEEEecCCCCChhHHHHHHhccccCC
Q 012877 91 AVDWVVQVDCPEDVASYIHRVGRTARYN 118 (454)
Q Consensus 91 ~Vd~VIq~D~P~~~~~YIhRvGRtgR~g 118 (454)
.++.||.++.|..-..|+|+.||+-+.+
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999996543
No 170
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.17 E-value=0.42 Score=55.77 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=65.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc-ccccccccCCCccEE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDWV 95 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD-vaaRGLD~~p~Vd~V 95 (454)
.+.+++|.++|...+..+++.|+.++. ++.+..+||..+..++..++..+.. ...|+|+|. ++...+.| .++.+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f-~~L~ll 577 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKF-KDLGLL 577 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc-ccCCEE
Confidence 357899999999999999999988755 4567889999999999999999998 899999996 45567888 889988
Q ss_pred Ee
Q 012877 96 VQ 97 (454)
Q Consensus 96 Iq 97 (454)
|-
T Consensus 578 VI 579 (926)
T TIGR00580 578 II 579 (926)
T ss_pred Ee
Confidence 86
No 171
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.08 E-value=0.45 Score=56.76 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=64.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc-ccccccccCCCccEE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-VASRGLDFNKAVDWV 95 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD-vaaRGLD~~p~Vd~V 95 (454)
.+.+++|.|+|+..+..++..|...+. ++.+.+++|..+..++..++..... ...|+|+|. ++...+.+ ..+.+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~-~~L~lL 726 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKW-KDLGLL 726 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCH-hhCCEE
Confidence 467899999999999999999987544 4677889999999999999999888 889999995 45556778 788888
Q ss_pred Ee
Q 012877 96 VQ 97 (454)
Q Consensus 96 Iq 97 (454)
|-
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 75
No 172
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.98 E-value=0.38 Score=52.47 Aligned_cols=70 Identities=20% Similarity=0.398 Sum_probs=57.3
Q ss_pred EEEEeCChHHHHHHHHHHHhcCC---CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCccE
Q 012877 24 ILVFLTSCKQVKYVFEAFKKLRP---GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVDW 94 (454)
Q Consensus 24 iIVF~sS~k~v~~l~~~L~~l~~---gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~Vd~ 94 (454)
+||+++|+..+..+++.+..+.. ++.+.+++|+++...+...+.. ...|||||+ .+.+| +++ ..|.|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~~~ivVaTPGRllD~i~~~~l~l-~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---GVDIVVATPGRLLDLIKRGKLDL-SGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---CCCEEEECccHHHHHHHcCCcch-hhcCE
Confidence 99999999999999999887643 5778999999998776644444 589999996 46666 888 88999
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 173
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.93 E-value=0.73 Score=42.81 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=53.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cccc-cccCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-LDFNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaRG-LD~~p~ 91 (454)
.+.++||.++|...+......+.... .++.+..+||+.+....... +.....|+|+|.- +.++ .++ +.
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~l~~~~~~~-~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LKRGPHIVVATPGRLLDLLERGKLDL-SK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcCCCCEEEEChHHHHHHHHcCCCCh-hh
Confidence 45689999999999998887776653 26788899999887655432 2246789999942 2233 566 77
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 887774
No 174
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.49 E-value=0.5 Score=52.88 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=54.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc---CCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l---~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~ 91 (454)
..++||.|+|+..+..+++.|..+ .+++.+..+||+++...+... +.....|+|+|. .+.++ +++ .+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~~~~~IVVgTPgrl~d~l~r~~l~l-~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LRQGPQIVVGTPGRLLDHLKRGTLDL-SK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCcch-hh
Confidence 457999999999999888876654 358899999999876554332 233678999994 44454 788 88
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+.+||-
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888874
No 175
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.37 E-value=0.29 Score=55.49 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=76.6
Q ss_pred cCcchHHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 3 VPLEQKLDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
++...|...++.+|.... +..+||-++-......+...|...+ |.++..+|+++++.+|..++.+..+ +..|+|.|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF-g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF-GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh-CCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 456778899999987653 6789999999999999999999887 6999999999999999999999999 99999988
Q ss_pred cccccccccCCCccEEEe
Q 012877 80 DVASRGLDFNKAVDWVVQ 97 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq 97 (454)
-.|- =+-| ++.-+||-
T Consensus 304 RSAl-F~Pf-~~LGLIIv 319 (730)
T COG1198 304 RSAL-FLPF-KNLGLIIV 319 (730)
T ss_pred chhh-cCch-hhccEEEE
Confidence 6533 3345 56666664
No 176
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=92.00 E-value=0.59 Score=49.76 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=56.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc---CCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc-ccccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l---~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR-GLD~~p~ 91 (454)
..++||.|+|+..+..+++.++.+ .+++.+..++|+.+...+... +.....|+|+|. .+.+ .+++ .+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~~~~~IvV~Tp~rl~~~l~~~~~~l-~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LEHGAHIIVGTPGRILDHLRKGTLDL-DA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hcCCCCEEEEChHHHHHHHHcCCccH-HH
Confidence 347999999999999999888765 247889999999987655432 234678999993 3443 5788 88
Q ss_pred ccEEEecCC
Q 012877 92 VDWVVQVDC 100 (454)
Q Consensus 92 Vd~VIq~D~ 100 (454)
+.+||-=.+
T Consensus 148 l~~lViDEa 156 (460)
T PRK11776 148 LNTLVLDEA 156 (460)
T ss_pred CCEEEEECH
Confidence 999986443
No 177
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=91.95 E-value=0.85 Score=54.06 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=85.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--------------------CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--------------------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--------------------~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
.+++.|||+++++.|..++..|-.+. ..++..+=|-+|+.....-+..-|.. ...|+|.
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~ 1437 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVM 1437 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEE
Confidence 46789999999999988776553321 11222233888998888888888888 7788777
Q ss_pred ccccccccccCCCccEEEec-----C------CCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcCCC
Q 012877 79 TDVASRGLDFNKAVDWVVQV-----D------CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIP 144 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~-----D------~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~i~ 144 (454)
..- ..|+-. ..+.||-. | .+-......|++|+|.| .|.|+++.......|++..-..-+|
T Consensus 1438 s~~-~~~~~~--~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1438 SRD-CYGTKL--KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred Ecc-cccccc--cceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 655 777776 35666643 3 34568889999999988 5789999998888777765443444
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.53 E-value=0.08 Score=59.50 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHhcC--C-CcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--C-CcEEEec
Q 012877 6 EQKLDMLWSFIKAHL--N-SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--K-RSVLFCT 79 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~--~-~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~-~~VLVaT 79 (454)
..|+..+..+|.... . .++|||+.-..-...+..-|.. .++....+-|.|+...|...+..|.. . ...|++.
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~--~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Sl 598 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF--KGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSL 598 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh--cccccchhhhhhHHHHHHhhhcccccCccHHHHHHHH
Confidence 346666666665322 2 3899998877766666655553 38888889999999999999999998 2 3467889
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEE
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVL 125 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail 125 (454)
-+.+-|+++ -...+|+-.|+-|++..--|-+-|+-|.|+.-.+.+
T Consensus 599 kag~~glnl-t~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 599 KAGKVGLNL-TAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HHhhhhhch-hhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999 899999999999999999999999999987655443
No 179
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.87 E-value=5.6 Score=43.61 Aligned_cols=188 Identities=15% Similarity=0.231 Sum_probs=109.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCC--CceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPG--IPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~g--i~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~V 92 (454)
+..+||-++|++.+..+...+.....+ +...|++|+.+...+.. +..+...|+|||. .+.+| +++ ..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~---~l~~gvdiviaTPGRl~d~le~g~~~l-~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLR---DLERGVDVVIATPGRLIDLLEEGSLNL-SRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHH---HHhcCCcEEEeCChHHHHHHHcCCccc-cce
Confidence 345999999999999999988886543 45899999998765543 2233578999995 45555 677 788
Q ss_pred cEEE--------ecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHH-HHHcCCCcccccccccccchHHHHHH
Q 012877 93 DWVV--------QVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEK-LREAKIPIHFTKANTKRLQPVSGLLA 163 (454)
Q Consensus 93 d~VI--------q~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~-L~~~~i~i~~~~i~~~k~~~i~~~l~ 163 (454)
.+|| ..++-.++...+++++|+.| .-..+...-|.+...|.. +...-+.+.-...+..+....-.++.
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qiv 317 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIV 317 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhh
Confidence 8887 46677788899999999877 333444445666543322 21111111111111111111112222
Q ss_pred HHHhhChhHHHHHHHHHHHHHHHhhcC-CCc-ccccccCCCHHHHHHHcCCCCCccccc
Q 012877 164 ALLVKYPDMQHRAQKAFITYLRSVHIQ-KDK-EVFDVTKLSIDEFSASLGLPMTPKIRF 220 (454)
Q Consensus 164 ~ll~~~~el~~~aqrAf~sylrs~~~~-~~k-~iF~v~~Ldl~~~A~S~GL~~~P~i~~ 220 (454)
..|. ..-+ ..-....++.++.. ..+ -||.-.....++++..+.-..-|.+.+
T Consensus 318 e~~~--~~~K---~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~i 371 (519)
T KOG0331|consen 318 EVCD--ETAK---LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAI 371 (519)
T ss_pred hhcC--HHHH---HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeee
Confidence 2232 1111 12234455555522 222 468877778888887776555444444
No 180
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=88.76 E-value=2.3 Score=44.85 Aligned_cols=75 Identities=13% Similarity=0.269 Sum_probs=55.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc------cccccccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv------aaRGLD~~p~V 92 (454)
..++||.++|+..+..+++.+..+. .++.+..++|+.+...+..++ .....|||||.- ....+++ ..+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~~~IlV~Tp~rl~~~~~~~~~~~-~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---SENQDIVVATPGRLLQYIKEENFDC-RAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---cCCCCEEEEChHHHHHHHHcCCcCc-ccC
Confidence 3579999999999998888777653 368899999999876654333 236789999962 2345778 888
Q ss_pred cEEEecC
Q 012877 93 DWVVQVD 99 (454)
Q Consensus 93 d~VIq~D 99 (454)
++||.=.
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 8888633
No 181
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.66 E-value=4.7 Score=44.08 Aligned_cols=184 Identities=16% Similarity=0.212 Sum_probs=95.6
Q ss_pred EEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc------cccccccCCCccEE
Q 012877 24 ILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNKAVDWV 95 (454)
Q Consensus 24 iIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv------aaRGLD~~p~Vd~V 95 (454)
.+|.|+|+..+..++....++. -|+.+.++||+++..++..-++ ....|+|||.- --.|+|| ..|.++
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g~EivVaTPgRlid~VkmKatn~-~rvS~L 374 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EGAEIVVATPGRLIDMVKMKATNL-SRVSYL 374 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cCCeEEEechHHHHHHHHhhcccc-eeeeEE
Confidence 5667799887776665544431 2789999999999866544433 36789999962 2247888 888887
Q ss_pred Ee------cCCC--CChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc--CCCcccccccccccchHHHHHHHH
Q 012877 96 VQ------VDCP--EDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA--KIPIHFTKANTKRLQPVSGLLAAL 165 (454)
Q Consensus 96 Iq------~D~P--~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~--~i~i~~~~i~~~k~~~i~~~l~~l 165 (454)
|. ||+- ..+.+..|-| |.. -.+|+|-..-- .-+..|.+. .-|+..+...-.....--.|...+
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hi----rpd--rQtllFsaTf~-~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHI----RPD--RQTLLFSATFK-KKIEKLARDILSDPVRVVQGEVGEANEDITQTVSV 447 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhc----CCc--ceEEEeeccch-HHHHHHHHHHhcCCeeEEEeehhccccchhheeee
Confidence 75 2221 1233333333 332 24555544322 223333322 333332222111111111122223
Q ss_pred HhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcccccccc
Q 012877 166 LVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFLNQ 223 (454)
Q Consensus 166 l~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~l~~ 223 (454)
|.....-.. -|...|-++.....--+|--++.+.+.+++-|-|.+- .+..|.+
T Consensus 448 ~~s~~~Kl~----wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-~v~llhg 500 (731)
T KOG0339|consen 448 CPSEEKKLN----WLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF-NVSLLHG 500 (731)
T ss_pred ccCcHHHHH----HHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc-eeeeecC
Confidence 332221111 1222333333334445788889999999999888764 3444444
No 182
>PRK14701 reverse gyrase; Provisional
Probab=88.57 E-value=1.6 Score=54.03 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=53.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC----CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP----GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~----gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
.+.++||.++|+..+..++..|+.+.. ++.+..+||+++..++..++..+.+ ...|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999887532 4678899999999999999999988 8999999975
No 183
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.48 E-value=2.3 Score=48.68 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccccccCCC--ccEEEe
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKA--VDWVVQ 97 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~~p~--Vd~VIq 97 (454)
.+.++-||++|...++.+.+..... +..++.++|..+..+ + +.|. +++|++=|.++.-|++| .. .+-|.-
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~d---v-~~W~-~~~VviYT~~itvG~Sf-~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLED---V-ESWK-KYDVVIYTPVITVGLSF-EEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccc---c-cccc-ceeEEEEeceEEEEecc-chhhceEEEE
Confidence 3667788999999888888877765 778888988776652 2 1121 67899999999999999 43 343333
Q ss_pred c--CC--CCChhHHHHHHhccccCCCCceEEEEeCcch
Q 012877 98 V--DC--PEDVASYIHRVGRTARYNSGGRSVLFLTPTE 131 (454)
Q Consensus 98 ~--D~--P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E 131 (454)
| .. -.+..+..|.+||+ |.=.....++++.+..
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDASG 389 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEeccc
Confidence 3 21 13455678999999 5545566667666653
No 184
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.99 E-value=1.6 Score=52.37 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCc---eEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIP---LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~---v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
.+.++||.++|+..+..++..|..+.. ++. +..+||+++..++...+..+.+ ...|||+|.-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 367899999999999999998887643 333 3468999999999999999988 7899999975
No 185
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.12 E-value=2.6 Score=46.69 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=53.2
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc--ccccCCCc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR--GLDFNKAV 92 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR--GLD~~p~V 92 (454)
.++||.++|+..+..++..+..+. .++.+..+||+.+...+...+ .....|||+|. .+.+ .+++ ..|
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l---~~~~dIiV~TP~rL~~~l~~~~~~~l-~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL---QQGVDVIIATPGRLIDYVKQHKVVSL-HAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH---hCCCCEEEECHHHHHHHHHhccccch-hhe
Confidence 579999999999999998887753 267789999999876554333 22678999995 3333 3667 778
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 87765
No 186
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.02 E-value=1.8 Score=47.45 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=47.8
Q ss_pred EEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 24 ILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 24 iIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
.|||++|+..+..+...|.... +++.++.|.|||+...+++++++ ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~---~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ---RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc---CCCEEEecc
Confidence 8999999999999999887763 58999999999999988888777 578999996
No 187
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.91 E-value=4.7 Score=44.27 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=78.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc--cccccccCCCccEEEec
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV--ASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv--aaRGLD~~p~Vd~VIq~ 98 (454)
.-||||.+|--.--.+...|.+. ++....+|-=-++..-.++-.-|-. ...||+-|.- .-|-.+| .+|.-||.|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~i-kGVk~vVfY 629 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHI-KGVKNVVFY 629 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhhee-cceeeEEEe
Confidence 45799999987767777888775 5666555544444444455566777 7788888864 4578899 999999999
Q ss_pred CCCCChhHHH---HHHhccccCCC----CceEEEEeCcchHHHHH
Q 012877 99 DCPEDVASYI---HRVGRTARYNS----GGRSVLFLTPTEMKMLE 136 (454)
Q Consensus 99 D~P~~~~~YI---hRvGRtgR~g~----~G~ail~l~p~E~~~l~ 136 (454)
.+|.+|--|. -..|||.-.|+ .-.|.++++.-+.--|.
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 9999998775 45566653332 34577777766653333
No 188
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=85.88 E-value=2.6 Score=48.00 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=50.8
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEeccccc
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVAS 83 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTDvaa 83 (454)
.+.....+++.||-|++.-.=.++. .|.+..|.+.|..+||. |.+|.++-..+.. .++|||+|=-++
T Consensus 441 yLkq~g~~gpHLVVvPsSTleNWlr-Ef~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la 510 (941)
T KOG0389|consen 441 YLKQIGNPGPHLVVVPSSTLENWLR-EFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLA 510 (941)
T ss_pred HHHHcCCCCCcEEEecchhHHHHHH-HHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecc
Confidence 3334455789999999865444444 46778899999999997 4788888888887 679999995444
No 189
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.01 E-value=3 Score=41.11 Aligned_cols=97 Identities=9% Similarity=0.135 Sum_probs=71.2
Q ss_pred HHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhc-C----CcEEEeccccccccccCCCccEEEecCCCCChhHHHH
Q 012877 36 YVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-K----RSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIH 109 (454)
Q Consensus 36 ~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~-~----~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIh 109 (454)
.|...|..... ++.+..++|+.+... -.|.. . ..|+|.=+.++||+-| ++.......--|.+.+|+.|
T Consensus 98 ei~~~l~~~~~~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTl-eGL~vsYf~R~s~~~DTL~Q 171 (239)
T PF10593_consen 98 EIKPELPKAISDGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTL-EGLTVSYFLRNSKQYDTLMQ 171 (239)
T ss_pred HHHHHHHHHHhcCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeE-CCcEEEEecCCCchHHHHHH
Confidence 33344433333 489999998766533 45555 3 6899999999999999 99998899999999999999
Q ss_pred HHhccc-cCCCCceEEEEeCcchHHHHHHH
Q 012877 110 RVGRTA-RYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 110 RvGRtg-R~g~~G~ail~l~p~E~~~l~~L 138 (454)
|.=-.| |.|-.+.|=+++++.-...+..+
T Consensus 172 mgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 172 MGRWFGYRPGYEDLCRIYMPEELYDWFRHI 201 (239)
T ss_pred HhhcccCCcccccceEEecCHHHHHHHHHH
Confidence 976666 66767788888766544555444
No 190
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=84.95 E-value=4.8 Score=43.02 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=53.4
Q ss_pred cEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc------ccccccccCCCccE
Q 012877 23 KILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASRGLDFNKAVDW 94 (454)
Q Consensus 23 KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD------vaaRGLD~~p~Vd~ 94 (454)
++||.++|+..+..+++.+..+. .++.+..++|+.+...... .+.....|||||. +....+++ ..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IiV~TP~rL~~~~~~~~~~l-~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRGGVDVLVATPGRLLDLEHQNAVKL-DQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcCCCcEEEEChHHHHHHHHcCCccc-ccceE
Confidence 69999999999999988887653 2567888999998755432 2334778999995 23456788 88888
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 876
No 191
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.20 E-value=5.8 Score=41.78 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=52.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----c-ccccccCCCcc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----A-SRGLDFNKAVD 93 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----a-aRGLD~~p~Vd 93 (454)
.++||.++|+..|..+++.+..+. .++.+..++|+.+....... +.....|||+|.- + ...+++ ..+.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~~~~IlV~TP~~l~~~l~~~~~~l-~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LESGVDILIGTTGRLIDYAKQNHINL-GAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCccc-cccc
Confidence 579999999999999887776542 36888999999876544332 2236789999962 2 235778 7889
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8886
No 192
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=83.72 E-value=9.8 Score=33.73 Aligned_cols=74 Identities=12% Similarity=0.282 Sum_probs=53.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHH-HHHHHHHHHhcCCcEEEeccc------cccccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQD-RRMAIYAQFCEKRSVLFCTDV------ASRGLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~-~R~~il~~F~~~~~VLVaTDv------aaRGLD~~p 90 (454)
...++||.+++...+..++..+..... ++.+..+||+.+.. .....+ .....|+|+|.- ....+++ .
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ilv~T~~~l~~~~~~~~~~~-~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---SNQADILVTTPEQLLDLISNGKINI-S 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---HTTSSEEEEEHHHHHHHHHTTSSTG-T
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc---cccccccccCcchhhcccccccccc-c
Confidence 345999999999999999999988753 46889999998854 222222 227899999954 1223566 5
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 119 ~~~~iVi 125 (169)
T PF00270_consen 119 RLSLIVI 125 (169)
T ss_dssp TESEEEE
T ss_pred cceeecc
Confidence 6777775
No 193
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.68 E-value=7.4 Score=41.71 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=53.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-----c-ccccccCCCc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-----A-SRGLDFNKAV 92 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-----a-aRGLD~~p~V 92 (454)
.++||.++|+..+..++..+..+. .++.+..+||+.+..... ..+.. ...|||+|.- . ...+.+ ..+
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l-~~l 238 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHL-DMV 238 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCccc-ccC
Confidence 579999999999999998887763 267889999998754432 34445 7799999962 1 224566 677
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
.+||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 87775
No 194
>PRK13766 Hef nuclease; Provisional
Probab=82.47 E-value=6.8 Score=44.61 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=58.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc------cccccccCC
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNK 90 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv------aaRGLD~~p 90 (454)
..+.++||.|+|...+...+..|.... ++..+..++|+.+...|..++. ...|+|+|.- ...-+++ .
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~----~~~iiv~T~~~l~~~l~~~~~~~-~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE----KAKVIVATPQVIENDLIAGRISL-E 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh----CCCEEEECHHHHHHHHHcCCCCh-h
Confidence 456899999999999988888887753 1237888999999887765443 4679999952 2344666 7
Q ss_pred CccEEEecCCCC
Q 012877 91 AVDWVVQVDCPE 102 (454)
Q Consensus 91 ~Vd~VIq~D~P~ 102 (454)
.+++||--.+-.
T Consensus 131 ~~~liVvDEaH~ 142 (773)
T PRK13766 131 DVSLLIFDEAHR 142 (773)
T ss_pred hCcEEEEECCcc
Confidence 788888766554
No 195
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.22 E-value=13 Score=40.87 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc--CCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l--~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
.-.++||.|+|+..+-.++...+++ +-.|.+...-||++-..+..++. ....|+|||+
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR---s~PDIVIATP 310 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR---SRPDIVIATP 310 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh---hCCCEEEecc
Confidence 3579999999999888877777665 23577777889999877766543 3688999997
No 196
>PTZ00110 helicase; Provisional
Probab=81.06 E-value=6.8 Score=43.10 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=52.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCcc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVD 93 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~Vd 93 (454)
..+||.++|+..|..++..+..+.. ++.+.+++|+.+...... .......|||+|. .+.++ +++ ..|+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l-~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNL-RRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCCh-hhCc
Confidence 4589999999999999888887632 567888999987654432 2334678999995 44444 667 7888
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||.
T Consensus 280 ~lVi 283 (545)
T PTZ00110 280 YLVL 283 (545)
T ss_pred EEEe
Confidence 8875
No 197
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.05 E-value=8.7 Score=43.24 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=69.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-cccccccCCCccEE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRGLDFNKAVDWV 95 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-aaRGLD~~p~Vd~V 95 (454)
.+.++.+-++|---++..|..|..+++ |+.+..|.|.+.-..|.+++.+..+ ..+|+|.|-+ +...+.| .+.-+|
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F-~~LgLV 388 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF-HNLGLV 388 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee-cceeEE
Confidence 467899999999999999999888765 8899999999999999999999999 9999999976 5668999 888888
Q ss_pred Ee
Q 012877 96 VQ 97 (454)
Q Consensus 96 Iq 97 (454)
|.
T Consensus 389 Ii 390 (677)
T COG1200 389 II 390 (677)
T ss_pred EE
Confidence 85
No 198
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=78.78 E-value=2.4 Score=49.00 Aligned_cols=108 Identities=14% Similarity=0.261 Sum_probs=78.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhc-----CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAV 92 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l-----~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~V 92 (454)
...+-++||.+--...-+|...|... ....+++.+|+.+.......+++-... ...++++|.++.--|-+ -++
T Consensus 641 ~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTi-dd~ 719 (1282)
T KOG0921|consen 641 NIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITI-DDV 719 (1282)
T ss_pred CCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeee-cce
Confidence 34677999998877777766655432 124578889999988888888877777 78899999999988888 777
Q ss_pred cEEEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeC
Q 012877 93 DWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLT 128 (454)
Q Consensus 93 d~VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~ 128 (454)
.+||..+. -.+....+||-||+||. +.|.|..++.
T Consensus 720 v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 720 VYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred eEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 77765442 12445668999999876 5666665543
No 199
>PRK09401 reverse gyrase; Reviewed
Probab=77.54 E-value=9 Score=46.16 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=55.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceE--eecCCCCHHHHHHHHHHHhc-CCcEEEecc-----ccccccccC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLM--CLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASRGLDFN 89 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~--~LHG~msq~~R~~il~~F~~-~~~VLVaTD-----vaaRGLD~~ 89 (454)
.+.++||.++|+..+..+++.|+.+.. ++.+. ..||+++..++......+.. ...|+|+|. .+. .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~- 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPK- 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccc-
Confidence 467899999999999999999988743 33333 44566677778888888888 889999995 222 3333
Q ss_pred CCccEEEe
Q 012877 90 KAVDWVVQ 97 (454)
Q Consensus 90 p~Vd~VIq 97 (454)
..+++||-
T Consensus 200 ~~~~~lVv 207 (1176)
T PRK09401 200 KKFDFVFV 207 (1176)
T ss_pred cccCEEEE
Confidence 34777664
No 200
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=77.41 E-value=4.4 Score=32.18 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=33.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
....++||||.+...+..++..|... |+. +..|.|++..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~--G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLREL--GFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHc--CCCceEEecCCHHH
Confidence 44678999999998898999999887 776 8899999865
No 201
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=76.40 E-value=17 Score=30.02 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 7 QKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 7 ~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
.|.-++..++.. +...++||+|++...+..+...+..... +..+..+|+........ ........|+|+|.-
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~i~t~~ 88 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLSGKTDIVVGTPG 88 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhcCCCCEEEECcH
Confidence 454444444432 3468999999999999998888877643 47788888876654443 111227788888865
Q ss_pred -cccccc
Q 012877 82 -ASRGLD 87 (454)
Q Consensus 82 -aaRGLD 87 (454)
+.+.+.
T Consensus 89 ~~~~~~~ 95 (144)
T cd00046 89 RLLDELE 95 (144)
T ss_pred HHHHHHH
Confidence 444433
No 202
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.87 E-value=11 Score=39.95 Aligned_cols=99 Identities=18% Similarity=0.316 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc----
Q 012877 9 LDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA---- 82 (454)
Q Consensus 9 l~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva---- 82 (454)
+.+|-.+|.....-.++|.++|+..+..+.+.|..+-. |+.+.+|-|||..... ..+...+..|||||.-.
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q---~~~L~kkPhilVaTPGrL~dh 193 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ---ANQLSKKPHILVATPGRLWDH 193 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH---HHHhhcCCCEEEeCcHHHHHH
Confidence 44555666555556799999999999999999987632 6678899999975332 22233367789999742
Q ss_pred ---ccccccCCCccEE--------EecCCCCChhHHHHHH
Q 012877 83 ---SRGLDFNKAVDWV--------VQVDCPEDVASYIHRV 111 (454)
Q Consensus 83 ---aRGLD~~p~Vd~V--------Iq~D~P~~~~~YIhRv 111 (454)
..|+.+ ..+.+. ++.|+-..++.++-++
T Consensus 194 l~~Tkgf~l-e~lk~LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 194 LENTKGFSL-EQLKFLVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred HHhccCccH-HHhHHHhhchHHhhhhhhhHHHHHHHHHhc
Confidence 356666 555544 4555544454444333
No 203
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.75 E-value=13 Score=39.87 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=52.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
...+||.++++..+...+..|... |+++..++|..+..++..++..... ...|+++|.-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKAS--GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 567999999999988888888876 8999999999999999999999888 8899999864
No 204
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=75.31 E-value=17 Score=32.08 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=45.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCC---CceEeecCCCCHHHHHHHHHHHhc-CCcEEEec-----cccccc-cccCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPG---IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-----DVASRG-LDFNK 90 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~g---i~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT-----DvaaRG-LD~~p 90 (454)
..++||.+++...+..+...+....+. .....++|... ...+..+.. ...|+++| +....+ +.+ .
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~-~ 128 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLEL-S 128 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCH-h
Confidence 478999999998888888888776433 33444555432 334445555 44899998 444443 355 5
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 129 ~~~~iIi 135 (201)
T smart00487 129 NVDLVIL 135 (201)
T ss_pred HCCEEEE
Confidence 5666654
No 205
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=74.81 E-value=15 Score=40.62 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
.+.+||.+++...+...+..|+.+ |+++..+||+++..++..++..... ...||++|.-
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 467899999999988888888886 8999999999999999999999888 8899988743
No 206
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=74.40 E-value=13 Score=42.64 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 15 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 15 ~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
++....+..+.|.++|...+...++.+..++. |+++.++.|+++..+|...+ .++|+++|..
T Consensus 91 ~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y-----~~dIvyGT~~ 154 (745)
T TIGR00963 91 YLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY-----ACDITYGTNN 154 (745)
T ss_pred HHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc-----CCCEEEECCC
Confidence 34445577899999999999999888877643 78999999999987765444 4689999986
No 207
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=73.69 E-value=5.6 Score=32.26 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++|+||++...+...+..|+.. |+.+..|.|++..
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~--G~~v~~l~GG~~~ 87 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQN--GFKVKNLDGGYKT 87 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHC--CCCEEEecCCHHH
Confidence 3568999999988888888899887 7789999999854
No 208
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=71.53 E-value=18 Score=43.14 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=68.7
Q ss_pred HHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCc--eEeecCCCCHHHHHHHHHHHhc-CCcEEEec-cccccccccCC
Q 012877 15 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP--LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-DVASRGLDFNK 90 (454)
Q Consensus 15 ~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~--v~~LHG~msq~~R~~il~~F~~-~~~VLVaT-DvaaRGLD~~p 90 (454)
|.--..+.++.|.|+|.-.++..|+.|...+.|++ +..|..=.+..+...+++...+ +.+|+|.| -+++-+|-| .
T Consensus 637 FkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F-k 715 (1139)
T COG1197 637 FKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF-K 715 (1139)
T ss_pred HHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE-e
Confidence 44445678999999999999999999999887765 4556666788899999999999 99999999 567788988 7
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
+.-+||.
T Consensus 716 dLGLlII 722 (1139)
T COG1197 716 DLGLLII 722 (1139)
T ss_pred cCCeEEE
Confidence 8888774
No 209
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.85 E-value=32 Score=38.92 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEee-------------------------cCCCCH
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL-------------------------YGRMKQ 59 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~L-------------------------HG~msq 59 (454)
...|.-++..++.. .+.++||.+++...+..++..|+.++|.-.|..+ .+.--.
T Consensus 39 gs~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~ 117 (655)
T TIGR00631 39 GSGKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIE 117 (655)
T ss_pred CcHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHH
Confidence 34566667777754 4578999999999999999999998876545544 111223
Q ss_pred HHHHHHHHHHhc-CCcEEEeccccccccccCC----CccEEEecCCCCChhHHHHHHhc
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK----AVDWVVQVDCPEDVASYIHRVGR 113 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p----~Vd~VIq~D~P~~~~~YIhRvGR 113 (454)
..|..++..... ...|+|||-.+-+|+-- | ...+.|..+-.-+.+.++.+.-.
T Consensus 118 ~~R~~al~~L~~~~~~ivVasv~~i~~l~~-p~~~~~~~~~l~~G~~i~~~~l~~~Lv~ 175 (655)
T TIGR00631 118 RLRHSATRSLLERRDVIVVASVSCIYGLGS-PEEYLKMVLHLEVGKEIDRRELLRRLVE 175 (655)
T ss_pred HHHHHHHHHHHhCCCeEEEEcHHHhcCCCC-HHHHHhccEEEeCCCCcCHHHHHHHHHH
Confidence 468888888887 66677777556677653 3 35677888888888888776643
No 210
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=69.16 E-value=6 Score=32.61 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++||+|.+...+...+..|... |+.+..|.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~--G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER--GYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc--CceeEEeCCcHHh
Confidence 4578999999988888899999887 8888899999854
No 211
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=69.15 E-value=23 Score=40.65 Aligned_cols=66 Identities=15% Similarity=0.330 Sum_probs=48.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCcEEEec-cccccccc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCT-DVASRGLD 87 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~VLVaT-DvaaRGLD 87 (454)
...++.||.|+-.-.-.+ ...|.+..|+++++++||. +.+|....+.+-. ...|+|+| .++-+--+
T Consensus 215 ~~~GPfLVi~P~StL~NW-~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~ 283 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNW-MNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSYEIAIKDKS 283 (971)
T ss_pred CCCCCeEEEeeHhhHHHH-HHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehHHHHHhhHH
Confidence 347899999986544444 4456777899999999997 4788888888877 77899888 44433333
No 212
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=69.12 E-value=17 Score=41.58 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-cccccc---------c
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-VASRGL---------D 87 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-vaaRGL---------D 87 (454)
.++.++||.++|+..+..++..|+.+. .++.+..++|+.+..+|.. .+....|+|+|. .+-.++ .
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRW----AREHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHH----HhcCCCEEEEChHHHHHhhccchhHHHHH
Confidence 345689999999999999999888763 3678889999999877632 223678999995 332221 2
Q ss_pred cCCCccEEEecCCC-------CChhHHHHHHhcccc
Q 012877 88 FNKAVDWVVQVDCP-------EDVASYIHRVGRTAR 116 (454)
Q Consensus 88 ~~p~Vd~VIq~D~P-------~~~~~YIhRvGRtgR 116 (454)
+ .++.+||-=.+- ..+...+.|+-|..+
T Consensus 155 l-~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~ 189 (742)
T TIGR03817 155 L-RRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCA 189 (742)
T ss_pred H-hcCCEEEEeChhhccCccHHHHHHHHHHHHHHHH
Confidence 5 678888852221 234555666655443
No 213
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=69.07 E-value=4.3 Score=46.49 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=47.6
Q ss_pred HHHHhc-CCcEEEeccccccccccCCCccEE--------EecCCCCChhHHHHHHhccccCCC-CceEEEEeC
Q 012877 66 YAQFCE-KRSVLFCTDVASRGLDFNKAVDWV--------VQVDCPEDVASYIHRVGRTARYNS-GGRSVLFLT 128 (454)
Q Consensus 66 l~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~V--------Iq~D~P~~~~~YIhRvGRtgR~g~-~G~ail~l~ 128 (454)
-++|.. ...|-|-+.+++-||-+ .+=.-| |-..+||+++.-||..|||-|.++ .+.-++|+-
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSL-QsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISL-QSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred HhhhccccceeeeeehhhccCcee-ecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 457888 67777888899999998 544444 558899999999999999999986 344455543
No 214
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=67.33 E-value=10 Score=31.29 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
....++||||.+...+...+..|..+ |+. +..|.||+..
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 98 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKER--GFKNVYQLKGGILK 98 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHh--CCcceeeechhHHH
Confidence 45678999999877777777888776 874 8889998753
No 215
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=67.08 E-value=10 Score=32.10 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 58 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~ms 58 (454)
...++||||++...+..++..|..+ |+ .+..|-|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~--G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELL--GYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHc--CCCCeeeeCChHH
Confidence 4678999999988888888889877 87 4788888874
No 216
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=65.81 E-value=30 Score=37.79 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=50.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc-ccccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR-GLD~~p~V 92 (454)
+..+||.++|+..+..++..+..+.. ++.+..+.|+.+..... ........|+|+|. ++.+ ++++ ..+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~~~~IiV~TPgrL~~~l~~~~~~l-~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQGVELIVGTPGRLIDLLSKHDIEL-DNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccc-hhe
Confidence 45799999999999888877766533 35566777776644332 22333678999993 4443 5778 788
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
.+||-
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 88875
No 217
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=65.67 E-value=20 Score=39.21 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=63.5
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCC---ceEeecCCCCHHHHHHHHHHHhcCCcEEEecc------cccc
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI---PLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD------VASR 84 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi---~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD------vaaR 84 (454)
.+|....+ ++|+..+|.-.|...+..|.+.. |+ .+..|.|..++++|...+. +..|+|||+ +.+-
T Consensus 52 ~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~-~ip~~~i~~ltGev~p~~R~~~w~----~~kVfvaTPQvveNDl~~G 125 (542)
T COG1111 52 NRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVT-GIPEDEIAALTGEVRPEEREELWA----KKKVFVATPQVVENDLKAG 125 (542)
T ss_pred HHHHhcCC-eEEEecCCchHHHHHHHHHHHHh-CCChhheeeecCCCChHHHHHHHh----hCCEEEeccHHHHhHHhcC
Confidence 45555555 89999999999999998888763 44 5779999999999986654 367899984 4444
Q ss_pred ccccCCCccEEEecCCCCC
Q 012877 85 GLDFNKAVDWVVQVDCPED 103 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~ 103 (454)
=||+ ..|.+||.=.+...
T Consensus 126 rid~-~dv~~lifDEAHRA 143 (542)
T COG1111 126 RIDL-DDVSLLIFDEAHRA 143 (542)
T ss_pred ccCh-HHceEEEechhhhc
Confidence 5898 89999987666553
No 218
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=65.44 E-value=79 Score=36.16 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=50.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc-----CCCCceEeecCCCCHHHHHHHHHHHhc-----CCcEEEec--cccccccc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCE-----KRSVLFCT--DVASRGLD 87 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l-----~~gi~v~~LHG~msq~~R~~il~~F~~-----~~~VLVaT--DvaaRGLD 87 (454)
-++-++||++|..-...++..+... ..+..-+++-...+ -..++..|.. ...+|+|- .-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 3467999999987666666665532 01222333333333 3556777765 34677764 45789999
Q ss_pred cCCC--ccEEEecCCCC
Q 012877 88 FNKA--VDWVVQVDCPE 102 (454)
Q Consensus 88 ~~p~--Vd~VIq~D~P~ 102 (454)
| .+ +..||-+++|.
T Consensus 705 F-~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 705 F-SDDLGRAVVVVGLPY 720 (821)
T ss_pred c-ccccccEEEEeecCC
Confidence 9 53 67899988886
No 219
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=64.16 E-value=59 Score=30.08 Aligned_cols=69 Identities=12% Similarity=0.249 Sum_probs=49.1
Q ss_pred HHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEe-ecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 10 DMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC-LYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 10 ~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~-LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
+++..+++.. .+.++-++-++...++.+.+.|++.+|++.+.. .||-+...+...+++..+. ..+|++.
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 3444455432 245676777777888888999999999999887 7888887777777777777 5555443
No 220
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=64.03 E-value=15 Score=30.83 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc--eEeecCCCCHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP--LMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~--v~~LHG~msq~ 60 (454)
...++||||.+.......+..|..+ |+. +..|.||+...
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~--G~~~~v~~l~gG~~~W 105 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINA--GLPNPVAALRNGTQGW 105 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHC--CCCcceeEecCCHHHH
Confidence 3568999999877777778888876 884 78899998653
No 221
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=63.13 E-value=48 Score=30.67 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=44.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEe-ecCCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMC-LYGRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~-LHG~msq~~R~~il~~F~~-~~~VLVa 78 (454)
+.++-++-.+...++.+...|++.+|++.+.. .||-++..+...+++..+. ..+||+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 45666666777888999999999999999885 5566787888888888887 6555544
No 222
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=61.64 E-value=76 Score=29.85 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=49.0
Q ss_pred HHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEE
Q 012877 10 DMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLF 77 (454)
Q Consensus 10 ~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLV 77 (454)
+++..++... .+.++-++=++...++.+.+.|++.+|++.+...||-.+..+...+++.-+. ..++|+
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 4455555543 2345555556677789999999999999998878999988777777777777 555443
No 223
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=61.59 E-value=31 Score=40.37 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=48.4
Q ss_pred HHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 15 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 15 ~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
++....+..++|.++|...+...++.+..++. |+.+.+++|+++...|...+ ..+|+++|.-
T Consensus 117 ~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y-----~~dIvygT~g 180 (896)
T PRK13104 117 YLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY-----KADIVYGTNN 180 (896)
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh-----CCCEEEECCh
Confidence 33344566799999999999998888877643 78999999999988875544 4688888864
No 224
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=61.27 E-value=70 Score=36.14 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEee--------------------cCC--CC---H
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCL--------------------YGR--MK---Q 59 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~L--------------------HG~--ms---q 59 (454)
...|--++..+++. .+.++||-+++...+..++..|..++|...|..+ +-. .+ .
T Consensus 42 gs~ka~lia~l~~~-~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~ 120 (652)
T PRK05298 42 GSGKTFTMANVIAR-LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIE 120 (652)
T ss_pred CcHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHH
Confidence 34455566666654 4578999999999999999999888776545544 111 11 3
Q ss_pred HHHHHHHHHHhc-CCcEEEeccccccccccC---CCccEEEecCCCCChhHHHHHHhcc
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFN---KAVDWVVQVDCPEDVASYIHRVGRT 114 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~---p~Vd~VIq~D~P~~~~~YIhRvGRt 114 (454)
..|..++..... ...|+|||-.+..++==| ....+.+..+-.-+.+.++.+.-..
T Consensus 121 ~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~ 179 (652)
T PRK05298 121 RLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDL 179 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHc
Confidence 468888988888 666666665444555420 2355778888888888887766443
No 225
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=61.11 E-value=11 Score=31.15 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+..+...|..+ |+. +..+.|++..
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~~~Gg~~~ 103 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSL--GYENVGNYPGSWLD 103 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHc--CCccceecCCcHHH
Confidence 3578999999988888888888877 774 7778888753
No 226
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=60.89 E-value=11 Score=32.62 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=32.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC--ceEeecCCCCHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI--PLMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi--~v~~LHG~msq~ 60 (454)
...++||||.+...+...+..|+.. |+ .+..+.|++...
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~--G~~~~v~~l~GG~~~W 111 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKEL--GLERFVRDIIGGLKAW 111 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHc--CCccceeeecchHHHH
Confidence 3678999999988888888899887 88 689999998543
No 227
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=60.80 E-value=39 Score=37.68 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=51.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.+.+||.+++...+......|+.. |+.+.+++|.++...+..++..... ...+|++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457999999999998888888876 8999999999999999888888888 888998884
No 228
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=59.75 E-value=32 Score=42.55 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh--------------cCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKK--------------LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV----- 81 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~--------------l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv----- 81 (454)
+.++|+.++++..+..++..|+. ..+++.+..+||+.++.+|...+. +...|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~---~ppdILVTTPEsL~~L 113 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR---NPPDILITTPESLYLM 113 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc---CCCCEEEecHHHHHHH
Confidence 46799999999998888877653 124788999999999988865322 26789999964
Q ss_pred c-ccc-cccCCCccEEEecC
Q 012877 82 A-SRG-LDFNKAVDWVVQVD 99 (454)
Q Consensus 82 a-aRG-LD~~p~Vd~VIq~D 99 (454)
+ .++ ..+ .+|.+||-=.
T Consensus 114 Ltsk~r~~L-~~Vr~VIVDE 132 (1490)
T PRK09751 114 LTSRARETL-RGVETVIIDE 132 (1490)
T ss_pred Hhhhhhhhh-ccCCEEEEec
Confidence 2 233 357 8899998633
No 229
>PTZ00424 helicase 45; Provisional
Probab=59.66 E-value=44 Score=34.48 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=50.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc------ccccccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva------aRGLD~~p~V 92 (454)
..++||+++|+..+..++..+..+.. ++.+..+.|+...... +..+.....|+|+|.-. .+.+.+ ..+
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l-~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAGVHMVVGTPGRVYDMIDKRHLRV-DDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCCCCEEEECcHHHHHHHHhCCccc-ccc
Confidence 56799999999999888887776532 4556677888765322 33343456899999631 234566 778
Q ss_pred cEEEecC
Q 012877 93 DWVVQVD 99 (454)
Q Consensus 93 d~VIq~D 99 (454)
++||-=.
T Consensus 172 ~lvViDE 178 (401)
T PTZ00424 172 KLFILDE 178 (401)
T ss_pred cEEEEec
Confidence 8887533
No 230
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=59.07 E-value=18 Score=29.55 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=30.4
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCC
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 58 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~ms 58 (454)
....++||||++...+...+..|..+ |+ .+..|.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLAL--GGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHc--CCCCEEEeCCCHH
Confidence 34678999999988888888888766 77 5888999874
No 231
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=58.94 E-value=22 Score=31.05 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFLT-SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~s-S~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++||||. +...+...+..|..+ |+.+..|.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~--G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESL--GIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHc--CCceeEeCCcHHH
Confidence 4678999996 556666777888776 8899999999865
No 232
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=58.17 E-value=24 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 58 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~ms 58 (454)
...++||+|++...+...+..|... |+ .+..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~--G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREA--GFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHc--CCceEEEcCCCHH
Confidence 4678999999999999999999887 66 4778889874
No 233
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=57.31 E-value=21 Score=30.35 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCCcEEEEeCC-hHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTS-CKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS-~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+ ...+..++..|..+ |+. +..|-|++..
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~--G~~~v~~l~GG~~~ 117 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF--GHENVRVLDGGLQA 117 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc--CCCCEEEecCCHHH
Confidence 36789999988 57777788888876 765 8888899865
No 234
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.14 E-value=46 Score=33.76 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=55.0
Q ss_pred CcEEEEeCChHHHHHH---HHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc------cccccccCCCc
Q 012877 22 SKILVFLTSCKQVKYV---FEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNKAV 92 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l---~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv------aaRGLD~~p~V 92 (454)
-.++|.|.|+..+-.+ |+.|.+..|++.+.++.||++-..-.+++.. ...|+|+|+- -.+-+++ .+|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~---~PhivVgTPGrilALvr~k~l~l-k~v 186 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN---CPHIVVGTPGRILALVRNRSLNL-KNV 186 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC---CCeEEEcCcHHHHHHHHhccCch-hhc
Confidence 4689999999877655 4566777799999999999987766665544 5678899972 2345777 677
Q ss_pred cEEEecCCC
Q 012877 93 DWVVQVDCP 101 (454)
Q Consensus 93 d~VIq~D~P 101 (454)
.+-|--.|-
T Consensus 187 khFvlDEcd 195 (387)
T KOG0329|consen 187 KHFVLDECD 195 (387)
T ss_pred ceeehhhHH
Confidence 766654443
No 235
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=57.06 E-value=23 Score=42.63 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=68.5
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccccccCCCccEEEec
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
+...++|||+......+-+...|... ++.....-++ +.-...+..|.+-...|+-+...+-|+++ -+..+|++.
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N--~I~~~~~~~t---~d~~dc~~~fk~I~clll~~~~~~~GLNL-~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMN--LIKKQLDGET---EDFDDCIICFKSIDCLLLFVSKGSKGLNL-IEATHVFLV 1292 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhh--hhHhhhccCC---cchhhhhhhcccceEEEEEeccCcccccH-Hhhhhhhee
Confidence 34678999998766655555555432 4433222221 23344566666623455667778889999 899999999
Q ss_pred CCCCChhHHHHHHhccccCCCCce
Q 012877 99 DCPEDVASYIHRVGRTARYNSGGR 122 (454)
Q Consensus 99 D~P~~~~~YIhRvGRtgR~g~~G~ 122 (454)
++--++..-.|-+||+-|.|+.-.
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccc
Confidence 999999999999999999998644
No 236
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=56.46 E-value=14 Score=30.12 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
+.++|+||.+...+...+..|..+ |+.+..|.|++..
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~--G~~v~~l~GG~~~ 92 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQM--GWEVYVLEGGLAA 92 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHc--CCEEEEecCcHHH
Confidence 568999999977777778888776 8888889999753
No 237
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=55.67 E-value=38 Score=38.44 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=49.2
Q ss_pred HhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccccccccc
Q 012877 17 KAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDF 88 (454)
Q Consensus 17 k~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~ 88 (454)
....+..++|.++|...+...++.+..++ -|+.+.++.|+++...|...+ .++|+++|.- +-|.|+
T Consensus 140 ~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y-----~~dIvygT~~-e~~FDy 207 (656)
T PRK12898 140 AALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY-----GADITYCTNK-ELVFDY 207 (656)
T ss_pred HhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc-----CCCEEEECCC-chhhhh
Confidence 33446789999999999988888777643 389999999999876655332 5678888864 456666
No 238
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=55.28 E-value=18 Score=29.74 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
..+++|||.+...+..++..|..+ |+. +..|.||+..
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~--G~~~v~~l~GG~~a 102 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKC--GVPRVCILDGGINA 102 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHc--CCCCEEEEeCcHHH
Confidence 678999999887777888888876 774 7789999753
No 239
>PHA03371 circ protein; Provisional
Probab=55.27 E-value=9.6 Score=37.42 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=33.3
Q ss_pred ccccccccCCCccEE-EecCCCCChh-------------HHHHHHhccccCCCCceEEEEeC
Q 012877 81 VASRGLDFNKAVDWV-VQVDCPEDVA-------------SYIHRVGRTARYNSGGRSVLFLT 128 (454)
Q Consensus 81 vaaRGLD~~p~Vd~V-Iq~D~P~~~~-------------~YIhRvGRtgR~g~~G~ail~l~ 128 (454)
+++|-||+ |+=+-+ |..||+.+.. .|+|.|||+--.|..-.-++++.
T Consensus 29 LaGR~vDL-PgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~ 89 (240)
T PHA03371 29 LAGRTVDL-PGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLS 89 (240)
T ss_pred hcCcceec-CCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEc
Confidence 57889999 777777 8888877544 56889999865555444555544
No 240
>PRK02362 ski2-like helicase; Provisional
Probab=54.73 E-value=27 Score=39.79 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~V 92 (454)
.+.++|+.++++..|...+..|..+.+ |+.+..++|+...... +.....|+|||. +...+ ..+ ..+
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l-~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWL-DDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhh-hhc
Confidence 467899999999999999998886532 7889999998765321 112568999994 22223 235 678
Q ss_pred cEEEecC
Q 012877 93 DWVVQVD 99 (454)
Q Consensus 93 d~VIq~D 99 (454)
.+||-=.
T Consensus 139 ~lvViDE 145 (737)
T PRK02362 139 TCVVVDE 145 (737)
T ss_pred CEEEEEC
Confidence 8888633
No 241
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=53.76 E-value=21 Score=29.45 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq~ 60 (454)
...+++|||++...+...+..|... |+ .+..|.|++..-
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~--G~~~v~~l~GG~~~w 96 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ--GFENVYNLQGGIDAW 96 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc--CCccEEEecCCHHHH
Confidence 3678999999988888888888875 77 478899997653
No 242
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=53.29 E-value=20 Score=29.33 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=29.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
..+++|||++...+...+..|.++ |+ .+..++|++..
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~--g~~~v~~l~gG~~~ 91 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAI--SAGEAYVLEGGLDA 91 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHc--CCccEEEeeCCHHH
Confidence 578999999988788888888876 55 67789998754
No 243
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=53.16 E-value=99 Score=31.36 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=48.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccccccC-----CCcc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDFN-----KAVD 93 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~~-----p~Vd 93 (454)
-+.-|+|||++...-+-..+..+++.+|.|-+ +-|.... + -.++.. ..++.|.+|-..||..++ -+..
T Consensus 60 Dp~mKaIVv~q~vpGt~~af~kIkekRpDIl~--ia~~~~E-D-p~~i~~---~aDi~~~~D~~~~G~~i~~~Ak~mGAk 132 (275)
T PF12683_consen 60 DPDMKAIVVSQAVPGTAEAFRKIKEKRPDILL--IAGEPHE-D-PEVISS---AADIVVNPDEISRGYTIVWAAKKMGAK 132 (275)
T ss_dssp -TTEEEEEEE-SS---HHHHHHHHHH-TTSEE--EESS--S---HHHHHH---HSSEEEE--HHHHHHHHHHHHHHTT-S
T ss_pred CCCccEEEEeCCCcchHHHHHHHHhcCCCeEE--EcCCCcC-C-HHHHhh---ccCeEeccchhhccHHHHHHHHHcCCc
Confidence 45679999999988887778888888777644 4444322 1 122222 468999999999999882 2677
Q ss_pred EEEecCCCCChh
Q 012877 94 WVVQVDCPEDVA 105 (454)
Q Consensus 94 ~VIq~D~P~~~~ 105 (454)
..|||.+|...+
T Consensus 133 tFVh~sfprhms 144 (275)
T PF12683_consen 133 TFVHYSFPRHMS 144 (275)
T ss_dssp -EEEEEETTGGG
T ss_pred eEEEEechhhcc
Confidence 889999998876
No 244
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=52.42 E-value=14 Score=30.13 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=30.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+. +..|.|++..
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~l~Gg~~~ 98 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDM--GLKPVYNIEGGFKD 98 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc--ChHHhEeecCcHHH
Confidence 4578999999877777888888876 776 8888888754
No 245
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=50.80 E-value=51 Score=35.93 Aligned_cols=55 Identities=16% Similarity=0.391 Sum_probs=41.5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
..+||..+|+..|..+|+.-++.. .++.+...+|+-+ ......+.. .+.|||||.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTp 210 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD----LGAQLRFIKRGCDILVATP 210 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc----hhhhhhhhccCccEEEecC
Confidence 569999999999999999877652 3567788888833 233445556 889999995
No 246
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.57 E-value=44 Score=36.47 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=52.6
Q ss_pred cEEEEeCChHHHHHHHHHHHh---cCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc-----cccc---ccccCC
Q 012877 23 KILVFLTSCKQVKYVFEAFKK---LRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASR---GLDFNK 90 (454)
Q Consensus 23 KiIVF~sS~k~v~~l~~~L~~---l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD-----vaaR---GLD~~p 90 (454)
-.||..+|+..+..+.+.+.. .++.+.+..+-||++-. +-+..|++ ..+|||+|+ ++.| ++++ .
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~-r 156 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSF-R 156 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccc-c
Confidence 479999999888777665543 34788899999997764 45778889 889999996 3444 5666 5
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
++.++|-
T Consensus 157 sLe~LVL 163 (567)
T KOG0345|consen 157 SLEILVL 163 (567)
T ss_pred ccceEEe
Confidence 6776664
No 247
>PRK05320 rhodanese superfamily protein; Provisional
Probab=49.15 E-value=35 Score=33.96 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=33.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDR 61 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~~ 61 (454)
.+.++++||.+...+......|.+. |+. +..|.||+....
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~--Gf~~V~~L~GGi~~w~ 214 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEV--GIDNVYQLEGGILKYF 214 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc--CCcceEEeccCHHHHH
Confidence 4678999999999999999999886 885 889999986533
No 248
>PRK13767 ATP-dependent helicase; Provisional
Probab=48.64 E-value=58 Score=38.10 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=50.0
Q ss_pred CcEEEEeCChHHHHHHHHHHHh--------------cCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----
Q 012877 22 SKILVFLTSCKQVKYVFEAFKK--------------LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA----- 82 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~--------------l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva----- 82 (454)
.++|+.++++..+..++..|.. ..+++.+..+||+.++..|...+. ....|||||.--
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~---~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK---KPPHILITTPESLAILL 161 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh---CCCCEEEecHHHHHHHh
Confidence 4699999999988877664431 123678899999999887754332 267899999621
Q ss_pred -cccc--ccCCCccEEEec
Q 012877 83 -SRGL--DFNKAVDWVVQV 98 (454)
Q Consensus 83 -aRGL--D~~p~Vd~VIq~ 98 (454)
.... .+ .++.+||-=
T Consensus 162 ~~~~~~~~l-~~l~~VVID 179 (876)
T PRK13767 162 NSPKFREKL-RTVKWVIVD 179 (876)
T ss_pred cChhHHHHH-hcCCEEEEe
Confidence 1111 35 678888863
No 249
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=48.62 E-value=28 Score=29.32 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCCcEEEEeCCh--HHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFLTSC--KQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~--k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++||||++. ..+..++..|..+ |+.+..|.|++..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~--G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAEL--GFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHc--CCeEEEecCCHHH
Confidence 367899999864 4677777888876 8888899999754
No 250
>PRK00254 ski2-like helicase; Provisional
Probab=48.33 E-value=50 Score=37.60 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~V 92 (454)
.+.++|+.++++..+...+..|..+. .|+.+..++|+.+...+ +.....|+|+|. ++.++ ..+ .+|
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l-~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWI-KDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhh-hcC
Confidence 35789999999999999988877531 27889999999875321 223678999994 22222 345 678
Q ss_pred cEEEecC
Q 012877 93 DWVVQVD 99 (454)
Q Consensus 93 d~VIq~D 99 (454)
.+||-=.
T Consensus 140 ~lvViDE 146 (720)
T PRK00254 140 KLVVADE 146 (720)
T ss_pred CEEEEcC
Confidence 8888633
No 251
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=47.62 E-value=32 Score=39.95 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=57.0
Q ss_pred HhcCCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccC--CCCce-----------EEEEeCcchHHHH
Q 012877 69 FCEKRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARY--NSGGR-----------SVLFLTPTEMKML 135 (454)
Q Consensus 69 F~~~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~--g~~G~-----------ail~l~p~E~~~l 135 (454)
|......||+--++-+|.|= |+|=.++-.....|..+=+|.|||.-|. +..|. -.+++..++..|+
T Consensus 480 Fd~plRFIFS~waLrEGWDN-PNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv 558 (985)
T COG3587 480 FDEPLRFIFSKWALREGWDN-PNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFV 558 (985)
T ss_pred cCCcceeeeehhHHhhcCCC-CCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHH
Confidence 33356899999999999996 9999999999999999999999999996 23332 2345566777999
Q ss_pred HHHHHc
Q 012877 136 EKLREA 141 (454)
Q Consensus 136 ~~L~~~ 141 (454)
..|...
T Consensus 559 ~~LqkE 564 (985)
T COG3587 559 KALQKE 564 (985)
T ss_pred HHHHHH
Confidence 988653
No 252
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=47.09 E-value=31 Score=28.04 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=28.2
Q ss_pred CCcEEEEeCC--hHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 21 NSKILVFLTS--CKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS--~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
..++||||.+ +..+...+..|... |+ .+..+.||+..
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~--G~~~v~~l~GG~~~ 89 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSEL--GYTDVALLEGGLQG 89 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHc--CccCEEEccCCHHH
Confidence 6689999999 44467777888776 65 57889999753
No 253
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=46.67 E-value=39 Score=39.38 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=38.2
Q ss_pred CcEEEEe-CChHHHHHHHHHHHhcCC-------------------------CCceEeecCCCCHHHHHHHHHHHhcCCcE
Q 012877 22 SKILVFL-TSCKQVKYVFEAFKKLRP-------------------------GIPLMCLYGRMKQDRRMAIYAQFCEKRSV 75 (454)
Q Consensus 22 ~KiIVF~-sS~k~v~~l~~~L~~l~~-------------------------gi~v~~LHG~msq~~R~~il~~F~~~~~V 75 (454)
.+.|||| +|+..|..+++.+..+.. .+.+..++||.+.... +........|
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~~~p~I 138 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDPHRPAV 138 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcCCCCcE
Confidence 4577766 999999888887766521 3678889999875432 1222226689
Q ss_pred EEec
Q 012877 76 LFCT 79 (454)
Q Consensus 76 LVaT 79 (454)
||+|
T Consensus 139 IVgT 142 (844)
T TIGR02621 139 IVGT 142 (844)
T ss_pred EEEC
Confidence 9999
No 254
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=46.23 E-value=69 Score=37.88 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
+..++|.++|...+...++.+..+. -|+.+.++.|+++...+...+ .+.|+|+|+-
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y-----~~DIVygTPg 192 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY-----QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc-----CCCEEEECCC
Confidence 3458888999999998888887753 378899999999988876443 4789999964
No 255
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=46.21 E-value=48 Score=27.00 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCcEEEEeCChHHHHHHHHH-----HHhcCCCC-ceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEA-----FKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~-----L~~l~~gi-~v~~LHG~msq 59 (454)
...+|+||++.......... |..+ |+ .+..|.||+..
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~--g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKL--GFKNVYILDGGFEA 109 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHT--TTSSEEEETTHHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHc--CCCCEEEecChHHH
Confidence 45788899766666655555 7775 76 89999999764
No 256
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=46.13 E-value=38 Score=30.23 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCCcEEEEeCC---hHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTS---CKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS---~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+ ...+-.++-.|..+ |. .+..|.|+++.
T Consensus 94 ~~~~vVvY~~~~~~g~~A~r~~~~l~~~--G~~~v~ildGG~~~ 135 (138)
T cd01445 94 LDKHLIATDGDDLGGFTACHIALAARLC--GHPDVAILDGGFFE 135 (138)
T ss_pred CCCeEEEECCCCCcchHHHHHHHHHHHc--CCCCeEEeCCCHHH
Confidence 46789999976 44445555566655 65 47789998754
No 257
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=45.33 E-value=65 Score=38.94 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEecc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTD 80 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTD 80 (454)
.+.+||.+++...+..-...|... |+++..+.|+++..++..++..+.. ...||++|.
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 467999999999887444445444 8999999999999999999988875 678999997
No 258
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=45.13 E-value=63 Score=32.32 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHhc
Q 012877 7 QKLDMLWSFIKAHL-NSKILVFLTSCKQVKYVFEAFKKL 44 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~-~~KiIVF~sS~k~v~~l~~~L~~l 44 (454)
.++..-+.+++... ....|+||+|++++......+...
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r 86 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAER 86 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHH
Confidence 35555667776644 467899999999998888877664
No 259
>PLN02160 thiosulfate sulfurtransferase
Probab=44.93 E-value=32 Score=30.61 Aligned_cols=39 Identities=15% Similarity=-0.073 Sum_probs=32.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq~ 60 (454)
...++|+||.+...+...+..|... |+ .+..|.|++...
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~--G~~~v~~l~GG~~~W 119 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAA--GYKKVRNKGGGYLAW 119 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHc--CCCCeeecCCcHHHH
Confidence 4578999999999999999999876 77 477889997653
No 260
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=43.42 E-value=55 Score=27.26 Aligned_cols=46 Identities=11% Similarity=0.249 Sum_probs=33.3
Q ss_pred HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 12 LWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 12 L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
|..++... ...+++|+|.+...+...+..|... |+. +..+.|++..
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~--G~~~v~~l~GG~~~ 95 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQ--GFDVVYSIDGGFEA 95 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHC--CchheEEecCCHHH
Confidence 33444333 3567999999888888888888876 774 7789998754
No 261
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=43.15 E-value=81 Score=36.80 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=47.7
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
.++....+..+-|.++|...+...++.+..++. |+++.++.|+++..+|...+. ++|+++|..
T Consensus 115 a~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~-----~dI~ygT~~ 179 (830)
T PRK12904 115 AYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA-----ADITYGTNN 179 (830)
T ss_pred HHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC-----CCeEEECCc
Confidence 334444566788999998888887777766543 899999999999988877753 567777764
No 262
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=42.83 E-value=68 Score=37.21 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=46.6
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCC-HHHHHHHHHHHhcCCcEEEecc
Q 012877 14 SFIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMK-QDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 14 ~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~ms-q~~R~~il~~F~~~~~VLVaTD 80 (454)
.++....+..++|.++|...+...++.+..++ -|+++.++.|+++ ..+|..++ .++|+++|.
T Consensus 112 ~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y-----~~dIvygT~ 176 (790)
T PRK09200 112 LYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY-----EADIIYTTN 176 (790)
T ss_pred HHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc-----CCCEEEECC
Confidence 33444567889999999998888777766542 3899999999999 77765332 478999983
No 263
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.60 E-value=57 Score=35.94 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=39.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCCCc--eEeecCCCCHHHHH-HHHHHHhc-CCcEEEeccc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRPGIP--LMCLYGRMKQDRRM-AIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~gi~--v~~LHG~msq~~R~-~il~~F~~-~~~VLVaTDv 81 (454)
-++||.++|+..+-.++..|..+.+|.. |..+.|.-+-+.-. +....-.. ..+|||||.-
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 4799999999999999999999877544 44455543332211 11112222 4589999973
No 264
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=42.15 E-value=45 Score=28.55 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=30.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+. +..+.|++..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~--G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQA--GFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHC--CCCeEEECcCceec
Confidence 5678999999988888888899886 775 7778898764
No 265
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=41.49 E-value=71 Score=28.76 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
..++||+|.+...+..++..|... |+ .+..|.||+..
T Consensus 49 ~~~vVv~c~~g~~a~~aa~~L~~~--G~~~v~~L~GG~~a 86 (145)
T cd01535 49 AERYVLTCGSSLLARFAAADLAAL--TVKPVFVLEGGTAA 86 (145)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHc--CCcCeEEecCcHHH
Confidence 578999999988888888888876 55 79999999754
No 266
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=41.06 E-value=15 Score=41.63 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc----CCcEEEec
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE----KRSVLFCT 79 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~----~~~VLVaT 79 (454)
..|+.+|...++.. .+.+++||..-....+.+-..+... + ....+.|...-..|..++.+|+. ....|+||
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~--~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllst 690 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYE--G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLST 690 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhcc--C-cceeccCCccchhhhhhccccCCCCccceEEEeec
Confidence 45777777777654 3689999999898888888888764 5 77788999999999999999996 45688899
Q ss_pred cccccc
Q 012877 80 DVASRG 85 (454)
Q Consensus 80 DvaaRG 85 (454)
-+.+-|
T Consensus 691 ra~g~g 696 (696)
T KOG0383|consen 691 RAGGLG 696 (696)
T ss_pred ccccCC
Confidence 876654
No 267
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=40.51 E-value=51 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=30.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCC-CceEeecCCCC
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPG-IPLMCLYGRMK 58 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~g-i~v~~LHG~ms 58 (454)
....++||||.++..+..++..|... | ..+..|-|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~--G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKA--GGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHh--CcccEEEecCChh
Confidence 35679999999988999999999886 4 45777888864
No 268
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=40.21 E-value=1.3e+02 Score=31.97 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=80.1
Q ss_pred CcchHHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 4 PLEQKLDMLWSFIKA--HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~--~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
....|..+++.-+.. +.+..+.|-.+....|-.++..|+..++++.+..|||+-++.-| ..++|||.-
T Consensus 125 ~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr----------~plvVaTtH 194 (441)
T COG4098 125 TGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR----------APLVVATTH 194 (441)
T ss_pred cCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc----------ccEEEEehH
Confidence 345677788777754 34678888888899999999999999999999999999776333 456666642
Q ss_pred cccccccCCCccEEEe--c-CCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 82 ASRGLDFNKAVDWVVQ--V-DCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq--~-D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
= =+-|..+.|++|. + .+|.+-+..+|-+-+-+|--.....++-.+| .....+.+..
T Consensus 195 Q--LlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp-~k~l~r~~~~ 253 (441)
T COG4098 195 Q--LLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATP-TKKLERKILK 253 (441)
T ss_pred H--HHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCC-hHHHHHHhhh
Confidence 1 1122234455554 2 2577888888887777776443333333334 3334444433
No 269
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.49 E-value=51 Score=36.60 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=56.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCC---CceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-------cccccccCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPG---IPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-------ASRGLDFNK 90 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~g---i~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-------aaRGLD~~p 90 (454)
+.=.||.++|++.|-.+|+.++++... |....+-||= .|..--.+.+..++|||+|.- --..|++ .
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGE---kkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~-s 286 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGE---KKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKF-S 286 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccc---ccccHHHHHhcCceEEEcCchHHHHHHhccchhee-e
Confidence 446899999999999999999987432 2222333442 222222344558899999972 1235667 7
Q ss_pred CccEEEe--------cCCCCChhHHHHHHhc
Q 012877 91 AVDWVVQ--------VDCPEDVASYIHRVGR 113 (454)
Q Consensus 91 ~Vd~VIq--------~D~P~~~~~YIhRvGR 113 (454)
.+.|||. .+.-.++...+--++-
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 7889885 3344556555555543
No 270
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=38.67 E-value=1.1e+02 Score=35.72 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCcEEEEeCChH----HHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc----
Q 012877 11 MLWSFIKAHLNSKILVFLTSCK----QVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV---- 81 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k----~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv---- 81 (454)
+|..+++ ....+.|++.+|.. |++.+.+++...-.++.+..++|..++.+|. .+.. ...|||||.-
T Consensus 106 Ild~~l~-~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~ 180 (851)
T COG1205 106 ILDHLLR-DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHY 180 (851)
T ss_pred HHHHHhh-CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHH
Confidence 3444443 34557899999954 5566666666652258899999999998887 3344 8899999743
Q ss_pred -ccccccc----CCCccEEEecCCC-------CChhHHHHHHhccccCCCCceEEEEeC
Q 012877 82 -ASRGLDF----NKAVDWVVQVDCP-------EDVASYIHRVGRTARYNSGGRSVLFLT 128 (454)
Q Consensus 82 -aaRGLD~----~p~Vd~VIq~D~P-------~~~~~YIhRvGRtgR~g~~G~ail~l~ 128 (454)
+-|.-+- ..++.+||-=.+. .++.-.+-|..|-.|.+.....+++..
T Consensus 181 ~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~S 239 (851)
T COG1205 181 LLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTS 239 (851)
T ss_pred HhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 2233221 0235555543332 356666778877776655444444443
No 271
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=38.48 E-value=72 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 58 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~ms 58 (454)
..++||||++...+...+..|..+ |+.....-||+.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~--G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDM--GYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHc--CCCeEEecCCHH
Confidence 467899999988888888899887 876444458764
No 272
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=38.45 E-value=76 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
..++||||++...+...+..|... |+....+.||+..
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~--G~~~v~~~GG~~~ 96 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEM--GYTHAENAGGLKD 96 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHc--CCCeEEecCCHHH
Confidence 457999999988888888899876 7765555788653
No 273
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=37.75 E-value=1.2e+02 Score=33.21 Aligned_cols=88 Identities=18% Similarity=0.230 Sum_probs=54.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc---CCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccccccccc--------
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDF-------- 88 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l---~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~-------- 88 (454)
.+..+||.|+|+..+-.++..++.+ .+++.+..+-||-.... -.++....+++||||+ +|=+|-
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k~~niliATP--GRLlDHlqNt~~f~ 227 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVKGCNILIATP--GRLLDHLQNTSGFL 227 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhccccEEEeCC--chHHhHhhcCCcch
Confidence 3568999999999887777666554 45777777778754322 2223333789999997 332321
Q ss_pred --------CCCccEEEecCCCCChhHHHHHHh
Q 012877 89 --------NKAVDWVVQVDCPEDVASYIHRVG 112 (454)
Q Consensus 89 --------~p~Vd~VIq~D~P~~~~~YIhRvG 112 (454)
-...|.+...+++.++...+--++
T Consensus 228 ~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp 259 (543)
T KOG0342|consen 228 FRNLKCLVLDEADRLLDIGFEEDVEQIIKILP 259 (543)
T ss_pred hhccceeEeecchhhhhcccHHHHHHHHHhcc
Confidence 012344445666777776665555
No 274
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=37.29 E-value=49 Score=33.00 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=31.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++|+||++.-.+-.++-.|..+ |+. +..|+|++..
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~--G~~~v~~y~Gs~~e 268 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATL--DVPNVKLYDGAWSE 268 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHc--CCCCceeeCCCHHH
Confidence 4568999999998888888888866 774 8889998764
No 275
>PRK01415 hypothetical protein; Validated
Probab=36.67 E-value=54 Score=32.64 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=33.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDR 61 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~~ 61 (454)
.+.++++||.+...+...+..|.+. |+. +..|.||+..-.
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~--Gf~~Vy~L~GGi~~w~ 210 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSI--GYDEVYHLKGGILQYL 210 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc--CCCcEEEechHHHHHH
Confidence 4678999999999999999999887 885 899999986543
No 276
>PRK01172 ski2-like helicase; Provisional
Probab=35.23 E-value=92 Score=35.07 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=49.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCcc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVD 93 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~Vd 93 (454)
+.++|+.++++..+...++.|.++. .|+.+..++|+..... .+.....|+|||. +..++ ..+ ..++
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~------~~~~~~dIiv~Tpek~~~l~~~~~~~l-~~v~ 137 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPP------DFIKRYDVVILTSEKADSLIHHDPYII-NDVG 137 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCh------hhhccCCEEEECHHHHHHHHhCChhHH-hhcC
Confidence 5689999999999999988887542 2778888889876432 1223568999997 22233 236 6788
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 138 lvVi 141 (674)
T PRK01172 138 LIVA 141 (674)
T ss_pred EEEE
Confidence 8875
No 277
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=35.19 E-value=68 Score=37.95 Aligned_cols=62 Identities=19% Similarity=0.409 Sum_probs=44.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccccccccc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLDF 88 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD~ 88 (454)
-=+||-++|+..+..++..++.+. -++.+.+.+|+....+.... .++...|+|||. +|=||+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---lkRg~eIvV~tp--GRmiD~ 502 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---LKRGAEIVVCTP--GRMIDI 502 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---HhcCCceEEecc--chhhhh
Confidence 347888999999998888776642 38899999999877655444 444567888886 444554
No 278
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=34.72 E-value=1.6e+02 Score=34.73 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 10 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 10 ~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
.+|..++....+..+-|.++|--.+..-++.+..++. |+++.++.|.+++.+|..++. +.|+++|..
T Consensus 112 A~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~-----~dI~YGT~~ 180 (913)
T PRK13103 112 GTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA-----ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc-----CCEEEEccc
Confidence 3455566666788899999997777777776665542 899999999999999987776 566666654
No 279
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=34.43 E-value=1.4e+02 Score=28.30 Aligned_cols=87 Identities=16% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHcCCCcccccccccccchHHHHHHHHHhhC
Q 012877 90 KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREAKIPIHFTKANTKRLQPVSGLLAALLVKY 169 (454)
Q Consensus 90 p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~~i~i~~~~i~~~k~~~i~~~l~~ll~~~ 169 (454)
..++-||-+|||.+.+..-+-+ . .+.....++++...+..++. ++| +
T Consensus 50 ~~~~~lVl~D~P~~~~~l~~~l-~---~~~~~~Iyl~f~~~~~~y~~-----~~P------------------------~ 96 (195)
T PF10141_consen 50 ESYDNLVLLDLPPSLEQLKELL-Q---QQQPERIYLLFYQQDSAYFE-----GMP------------------------T 96 (195)
T ss_pred ccCCEEEEEeCCCCHHHHHHHH-H---hCCcceEEEEECCccchhhc-----CCC------------------------C
Confidence 5789999999999998887766 2 34555566666444433331 333 1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcccccc
Q 012877 170 PDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL 221 (454)
Q Consensus 170 ~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~l 221 (454)
...|..+++.+..+. -|++.. ++.++|..+|+.. -.+.|.
T Consensus 97 -------Re~F~~~Y~~l~~~~---~~~l~~-~~~~La~~l~i~~-~~l~fm 136 (195)
T PF10141_consen 97 -------REQFKKLYKFLKQHP---NFDLKE-QLQALAKYLGISP-DTLKFM 136 (195)
T ss_pred -------HHHHHHHHHHHHhCC---CCCHHH-HHHHHHHHHCcCH-HHHHHH
Confidence 123555555544332 344444 4678999999876 355553
No 280
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=34.19 E-value=1.6e+02 Score=30.10 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHhc-------CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHH-----------
Q 012877 5 LEQKLDMLWSFIKAH-------LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIY----------- 66 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~-------~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il----------- 66 (454)
...|+..|..||... .+.++||.+.+.+..+.+-.+|.-. ++.+.-+.|.+-..+....-
T Consensus 94 tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk--~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~ 171 (297)
T PF11496_consen 94 TSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK--KLNYKRYSGESLYDEKHKVPKNGNTESNSSN 171 (297)
T ss_dssp T-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS--SSEEEESSS--S--S---S------------
T ss_pred cCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC--CeeEEecCCCCCcCccccCCccccccccccc
Confidence 346888888777544 2568999999999999888888643 66777777765444333222
Q ss_pred -HHHhc----CCcE-EEecccccccccc----CCCccEEEecCCCCChh-HHHHHHhccccCC
Q 012877 67 -AQFCE----KRSV-LFCTDVASRGLDF----NKAVDWVVQVDCPEDVA-SYIHRVGRTARYN 118 (454)
Q Consensus 67 -~~F~~----~~~V-LVaTDvaaRGLD~----~p~Vd~VIq~D~P~~~~-~YIhRvGRtgR~g 118 (454)
..... ...| |++|+-.... +. +..++.||-||.-.++. ..|+++-..+|.+
T Consensus 172 ~~~~~~~~~~~~~i~L~ts~~l~~~-~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~ 233 (297)
T PF11496_consen 172 NSKKKDKGSLSVWIHLITSDQLYNN-KPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN 233 (297)
T ss_dssp ----------SEEEEEEESS---TT-TS--TT-S-EEEEEE-SST--TTSHHHHHHH------
T ss_pred ccccccccccceEEEEecCcccccc-CCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC
Confidence 11111 2233 4555544442 22 13689999999876644 4667665554443
No 281
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=32.67 E-value=1e+02 Score=36.61 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCC--CCc-------e-EEEEeCcchHHHHHHHHHc
Q 012877 72 KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYN--SGG-------R-SVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 72 ~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g--~~G-------~-ail~l~p~E~~~l~~L~~~ 141 (454)
....+|+-.++..|.|. |+|=.++-+.-..+...-.|-+||.-|.- +.| . -.++++.++..|...|...
T Consensus 501 ~~~fifs~~al~egwd~-~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~E 579 (986)
T PRK15483 501 TRRFLFSKWTLREGWDN-PNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGE 579 (986)
T ss_pred CeEEEEEhHHhhhcCCC-CCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHH
Confidence 45789999999999999 99988888888888888899999998862 222 2 2234566777888888653
No 282
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=32.56 E-value=4.2e+02 Score=25.76 Aligned_cols=84 Identities=11% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCCcEEEEeCC------------hHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc----CCcEEEeccccc
Q 012877 20 LNSKILVFLTS------------CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE----KRSVLFCTDVAS 83 (454)
Q Consensus 20 ~~~KiIVF~sS------------~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~----~~~VLVaTDvaa 83 (454)
+.+.+||+.+. ..-++.+...|+.+ |+.|. ++-.++..+-.+++..|.. ...++|+. +++
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~l--gF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~s 83 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESL--GYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILS 83 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHC--CCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECC
Confidence 45678888774 35589999999998 88774 6788899999999999984 34454444 667
Q ss_pred cccccCCCccEEEecC-CCCChhHHHHHHh
Q 012877 84 RGLDFNKAVDWVVQVD-CPEDVASYIHRVG 112 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D-~P~~~~~YIhRvG 112 (454)
-|.. +.|+=.| .+-++...++...
T Consensus 84 HG~~-----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 84 HGEE-----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CCCC-----CEEEEecCcEEEHHHHHHhhc
Confidence 7744 4556555 4556666666654
No 283
>PF13245 AAA_19: Part of AAA domain
Probab=32.41 E-value=77 Score=25.43 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=34.2
Q ss_pred CcchHHHHHHHHHHhcC------CCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecC
Q 012877 4 PLEQKLDMLWSFIKAHL------NSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYG 55 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~------~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG 55 (454)
|..-|..++...+.... +.+++|.+.|...++.+.+.| ..+.. +..+|+
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl---~~~~~~~~T~h~ 74 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL---GLGVPFAMTIHS 74 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH---cCCCcchhhHHH
Confidence 45667766666664433 678999999999999998888 12444 555654
No 284
>PHA02558 uvsW UvsW helicase; Provisional
Probab=31.36 E-value=1.6e+02 Score=32.02 Aligned_cols=67 Identities=16% Similarity=0.326 Sum_probs=43.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEec--ccccccc-ccCCCccE
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCT--DVASRGL-DFNKAVDW 94 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaT--DvaaRGL-D~~p~Vd~ 94 (454)
...++||.|+|...+....+.|.... +...+..+.|+.... ....|+||| .+...+- .+ ..+++
T Consensus 157 ~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~----------~~~~I~VaT~qsl~~~~~~~~-~~~~~ 225 (501)
T PHA02558 157 YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD----------TDAPIVVSTWQSAVKQPKEWF-DQFGM 225 (501)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC----------CCCCEEEeeHHHHhhchhhhc-cccCE
Confidence 34489999999999999999988752 223344454543211 246799999 3332231 35 67888
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
||-
T Consensus 226 iIv 228 (501)
T PHA02558 226 VIV 228 (501)
T ss_pred EEE
Confidence 885
No 285
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=31.22 E-value=2e+02 Score=32.75 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCcEEEecccccc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTDVASR 84 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~VLVaTDvaaR 84 (454)
++...+..-++......+.|.|.|-..|.++...|+.. .-..++..-.. .....|--.-.+.
T Consensus 641 qr~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~----------------~~~r~I~k~nq~f~~~~~vipvy~aK 704 (747)
T COG3973 641 QRNPDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREK----------------DSQRTIAKENQRFHHGSDVIPVYDAK 704 (747)
T ss_pred HhhHHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhc----------------chhhHHHhhcccccCCceEEEeeecc
Confidence 34445555556666678889999988888888888753 11222222222 3333444445678
Q ss_pred ccccCCCccEEEecCCC
Q 012877 85 GLDFNKAVDWVVQVDCP 101 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P 101 (454)
||-| |+||-|||.
T Consensus 705 GlEF----D~viv~d~s 717 (747)
T COG3973 705 GLEF----DHVIVVDPS 717 (747)
T ss_pred ccee----eeEEEecch
Confidence 9999 889999983
No 286
>PRK09375 quinolinate synthetase; Provisional
Probab=31.19 E-value=6.2e+02 Score=26.28 Aligned_cols=103 Identities=19% Similarity=0.345 Sum_probs=55.8
Q ss_pred HHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHH--HHHHHHHhcCCcEEEeccccccccccCCCcc
Q 012877 16 IKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRR--MAIYAQFCEKRSVLFCTDVASRGLDFNKAVD 93 (454)
Q Consensus 16 Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R--~~il~~F~~~~~VLVaTDvaaRGLD~~p~Vd 93 (454)
+.+....+.|||++=....+++... |+-.+...+|+-+-.++ .+-+..|+.. . |+..
T Consensus 151 v~~~~~~~~IlF~PD~~Lg~~v~~l-----~~k~vilw~G~C~vH~~~~~e~i~~~r~~---------------~-Pda~ 209 (319)
T PRK09375 151 VEALPQGKKILFLPDQHLGRYVAKQ-----TGADIILWPGHCIVHEEFTAEDLERLRAE---------------Y-PDAK 209 (319)
T ss_pred HhccCCCCeEEEeCchHHHHHHHHc-----CCCEEEccCCcchhccCcCHHHHHHHHHH---------------C-cCCe
Confidence 4434456788998876666665432 44444444443222221 2233444441 1 7888
Q ss_pred EEEecCCCCChhHHHHHHhccccC-----CCCceEEEEeCcchHHHHHHHHHc
Q 012877 94 WVVQVDCPEDVASYIHRVGRTARY-----NSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 94 ~VIq~D~P~~~~~YIhRvGRtgR~-----g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
+|++-.||..+..+---+|=|+-+ ...+.-++|.+ |.+++.+|+..
T Consensus 210 Vv~HPEc~~eV~a~AD~vgSTs~~i~~v~~~~~~~~iigT--E~~L~~~l~~~ 260 (319)
T PRK09375 210 VLVHPECPPEVVALADFVGSTSQIIKAAKASPAKKFIVGT--EIGIVHRLQKA 260 (319)
T ss_pred EEEecCCCHHHHHhcCEEecHHHHHHHHHhCCCCeEEEEc--cHHHHHHHHHH
Confidence 888888887655544444444321 12355555555 55677777765
No 287
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=30.66 E-value=1.2e+02 Score=27.92 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA 82 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva 82 (454)
...++..++.++.+. .+.+++|.|++..++..|-+.|=...| ..+.=||...... .....|+|+++.
T Consensus 11 ~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~--~SFlPH~~~~~~~--------~a~~PV~L~~~~- 79 (154)
T PRK06646 11 DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSR--KQFIPHGSKLDPQ--------PEKQPIYITDEL- 79 (154)
T ss_pred CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCC--CCCCCCCCCCCCC--------CCCCCEEEecCC-
Confidence 356788888888763 378999999999999999888865422 2334455322110 014578887532
Q ss_pred ccccccCCCccEEEecCC
Q 012877 83 SRGLDFNKAVDWVVQVDC 100 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~ 100 (454)
+-|+.-+++||.+.
T Consensus 80 ----~~p~~~~vLiNL~~ 93 (154)
T PRK06646 80 ----QNPNNASVLVIISP 93 (154)
T ss_pred ----CCCCCCCEEEECCC
Confidence 22245677888865
No 288
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=30.23 E-value=76 Score=34.44 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEeccc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDV 81 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTDv 81 (454)
.+-+|||.+-...+..-...|.++ .+++-.|+++|+..+|.+++-+... ...+|--|+-
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~L--KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE 122 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRL--KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPE 122 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhc--CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchh
Confidence 346889988888777777788777 8999999999999999999999988 4567766653
No 289
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=29.75 E-value=1.3e+02 Score=27.09 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=30.3
Q ss_pred CcEEEEe--CChHHHHHHHHHHHhcCCCCceEeecCC
Q 012877 22 SKILVFL--TSCKQVKYVFEAFKKLRPGIPLMCLYGR 56 (454)
Q Consensus 22 ~KiIVF~--sS~k~v~~l~~~L~~l~~gi~v~~LHG~ 56 (454)
+.+-+|+ ..|.+|..+...|+..+|++.+.++|+.
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~~pni~~~v~~~~ 133 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKDFPNIKVNVVYNN 133 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHHCCCcEEEEecCC
Confidence 6788887 4588999999999999999999999874
No 290
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=29.72 E-value=1.5e+02 Score=26.44 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=41.3
Q ss_pred HHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccc
Q 012877 9 LDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG 85 (454)
Q Consensus 9 l~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRG 85 (454)
...+..++.+. .+.+++|+|.+..++..|-+.|=...| ..+.=||-.... .. ...|+|+++...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~--~sFlPH~~~~~~---------~~~~~PV~i~~~~~~-- 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSP--DSFLPHGLAGEP---------PAARQPVLITWDQEA-- 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSST--T----EEETT-S---------STT--SEEEE-TTS---
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCC--CCCCCCcccCCC---------CCCCCeEEEecCccc--
Confidence 46777777653 478999999999999999998865522 333444432210 11 347999987543
Q ss_pred cccCCCccEEEecCCC
Q 012877 86 LDFNKAVDWVVQVDCP 101 (454)
Q Consensus 86 LD~~p~Vd~VIq~D~P 101 (454)
-.. +.-+++||.+..
T Consensus 82 ~~~-~~~~vLinL~~~ 96 (137)
T PF04364_consen 82 NPN-NHADVLINLSGE 96 (137)
T ss_dssp ----S--SEEEE--SS
T ss_pred CCC-CCCCEEEECCCC
Confidence 122 336889998643
No 291
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=28.71 E-value=2e+02 Score=28.02 Aligned_cols=84 Identities=14% Similarity=0.236 Sum_probs=58.0
Q ss_pred cCCCcEEEEeCC-----------hHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--C---CcEEEecccc
Q 012877 19 HLNSKILVFLTS-----------CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--K---RSVLFCTDVA 82 (454)
Q Consensus 19 ~~~~KiIVF~sS-----------~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~---~~VLVaTDva 82 (454)
.+.+-+||+.++ ..-++.|...|+.+ |+.+. ++-.++..+-..++..|.. . ..++|+. ++
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~l--gF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~ 81 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSL--GYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LL 81 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHC--CCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-Ec
Confidence 345678888876 45799999999998 88774 6788999999999999986 2 3555555 67
Q ss_pred ccccccCCCccEEEecCC-CCChhHHHHHH
Q 012877 83 SRGLDFNKAVDWVVQVDC-PEDVASYIHRV 111 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~-P~~~~~YIhRv 111 (454)
+-|. .++|+=.|. +-++.......
T Consensus 82 sHG~-----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 82 SHGE-----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred CCCC-----CCeEEEecCCEEEHHHHHHhc
Confidence 7772 245555554 33444444433
No 292
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=28.55 E-value=79 Score=27.39 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=27.8
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhc----------CCC-CceEeecCCCCH
Q 012877 20 LNSKILVFLT-SCKQVKYVFEAFKKL----------RPG-IPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~s-S~k~v~~l~~~L~~l----------~~g-i~v~~LHG~msq 59 (454)
...++||||. +...+...+..|... .-| ..+..|.||+..
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~ 118 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKN 118 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHh
Confidence 4678999996 776666677777653 013 368899999753
No 293
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=28.21 E-value=91 Score=31.87 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
.+.++|+||.+.-.+-.++-.|..+ |+. +..|.|++..
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~--G~~~v~~YdGs~~e 306 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRL--GKTDVPVYDGSWTE 306 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHc--CCCCeeEeCCCHHH
Confidence 3678999999988887888888766 775 7789998754
No 294
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=27.57 E-value=57 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceE-eecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLM-CLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~-~LHG~msq 59 (454)
..+++|+|.+-.........|... |+... .+.|++..
T Consensus 61 ~~~ivv~C~~G~rS~~aa~~L~~~--G~~~~~~l~gG~~~ 98 (110)
T COG0607 61 DDPIVVYCASGVRSAAAAAALKLA--GFTNVYNLDGGIDA 98 (110)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHc--CCccccccCCcHHH
Confidence 578999999999888999999887 77776 78888654
No 295
>COG1204 Superfamily II helicase [General function prediction only]
Probab=27.46 E-value=1.5e+02 Score=34.30 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=49.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-CCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc----ccccc-cccCCCccE
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKL-RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD----VASRG-LDFNKAVDW 94 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l-~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD----vaaRG-LD~~p~Vd~ 94 (454)
+.|+|--|+++..|...++.|+.+ .-|+.+..++|++.... .|-..++|+|+|. ++-|- .++-..|++
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~l 149 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDL 149 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcchhhcccE
Confidence 579999999999999999999821 12999999999986422 2223789999993 33331 111146777
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
||-
T Consensus 150 vVi 152 (766)
T COG1204 150 VVI 152 (766)
T ss_pred EEE
Confidence 764
No 296
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=27.34 E-value=1.3e+02 Score=34.99 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH---------HHHHHHHHHHhc-CCcEEEecccccc--cccc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ---------DRRMAIYAQFCE-KRSVLFCTDVASR--GLDF 88 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq---------~~R~~il~~F~~-~~~VLVaTDvaaR--GLD~ 88 (454)
.+++||-|+..-...++- .|++..|-+.+..|||.-+- ..+..++.+.-. ...|||+|-..-| |=++
T Consensus 255 ~~paLIVCP~Tii~qW~~-E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l 333 (923)
T KOG0387|consen 255 TKPALIVCPATIIHQWMK-EFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDL 333 (923)
T ss_pred cCceEEEccHHHHHHHHH-HHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCccc
Confidence 478999999876555544 47778899999999986541 122222333333 5678888855433 3345
Q ss_pred CCCccE
Q 012877 89 NKAVDW 94 (454)
Q Consensus 89 ~p~Vd~ 94 (454)
-++.|
T Consensus 334 -~~~~W 338 (923)
T KOG0387|consen 334 -LGILW 338 (923)
T ss_pred -ccccc
Confidence 44444
No 297
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=26.96 E-value=97 Score=28.48 Aligned_cols=39 Identities=3% Similarity=-0.128 Sum_probs=28.7
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHhcCCCCc-eEeecCCCCHH
Q 012877 20 LNSKILVFLTSCK-QVKYVFEAFKKLRPGIP-LMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k-~v~~l~~~L~~l~~gi~-v~~LHG~msq~ 60 (454)
.+.++||||.+.. .....+..|..+ |+. +..|.|++...
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~--G~~~V~~l~GG~~aW 155 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAY--GYSNVYWYPDGTDGW 155 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhc--CCcceEEecCCHHHH
Confidence 5678999999743 455567777776 775 88899998653
No 298
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=26.83 E-value=1.9e+02 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=31.5
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCC
Q 012877 18 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 58 (454)
Q Consensus 18 ~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~ms 58 (454)
.....++|+.++++..+..+++.|...+ +-.+..+||...
T Consensus 26 ~~~~~~ii~v~P~~~L~~q~~~~l~~~f-~~~~~~~~~~~~ 65 (358)
T TIGR01587 26 SQKADRVIIALPTRATINAMYRRAKELF-GSNLGLLHSSSS 65 (358)
T ss_pred hCCCCeEEEEeehHHHHHHHHHHHHHHh-CcccEEeeccHH
Confidence 3456789999999999999999998875 446677788654
No 299
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=26.19 E-value=2.5e+02 Score=28.07 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=51.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCC-CCHHHHHHHHHHHhc-CCcEEEeccc-----ccc-ccccCCCc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGR-MKQDRRMAIYAQFCE-KRSVLFCTDV-----ASR-GLDFNKAV 92 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~-msq~~R~~il~~F~~-~~~VLVaTDv-----aaR-GLD~~p~V 92 (454)
..+||.|++.-.|-.++..|+.+.. +..++-|-+. +.-++....+ .. ..+|.|+|+- +.. .|.+ .++
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l-~~l 202 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSL-SNL 202 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCc-ccC
Confidence 3578888888888888888877532 3455555554 3555555444 33 6789999974 222 3555 566
Q ss_pred cEEEe------------cCCCCChhHHHHH
Q 012877 93 DWVVQ------------VDCPEDVASYIHR 110 (454)
Q Consensus 93 d~VIq------------~D~P~~~~~YIhR 110 (454)
.+||- +|+|+....+.+-
T Consensus 203 ~~ivlD~s~~D~K~~~i~d~~e~~~~l~~l 232 (252)
T PF14617_consen 203 KRIVLDWSYLDQKKRSIFDIPETREDLWKL 232 (252)
T ss_pred eEEEEcCCccccccccccccHHHHHHHHHH
Confidence 66652 5666665544443
No 300
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=25.97 E-value=1.3e+02 Score=33.67 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc--CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l--~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
+--+||..+|+..+-.+++.|.+. +.++++..+-||..-. ++.-+- ..+|||||+
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 446899999999999999999875 2356777788886532 222222 679999997
No 301
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=25.96 E-value=92 Score=31.81 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHhc---CCCcEEEEeCChH-HHHHHHHHHHhcCCCC-ceEeecCCCCHH
Q 012877 11 MLWSFIKAH---LNSKILVFLTSCK-QVKYVFEAFKKLRPGI-PLMCLYGRMKQD 60 (454)
Q Consensus 11 ~L~~~Lk~~---~~~KiIVF~sS~k-~v~~l~~~L~~l~~gi-~v~~LHG~msq~ 60 (454)
.|..+|... ...++||||.+.. .+-.++-.|+.+ |+ .+..|.|++..-
T Consensus 90 ~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~--G~~~V~~LdGG~~~W 142 (320)
T PLN02723 90 AFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVF--GHEKVWVLDGGLPKW 142 (320)
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHc--CCCceEEcCCCHHHH
Confidence 344445443 4678999987653 344555677776 77 488999997653
No 302
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=25.83 E-value=91 Score=31.99 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=32.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDR 61 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~~ 61 (454)
...+++|||.+...+...+..|... |+. +..|.||+....
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~--Gf~~V~~L~GGi~~w~ 210 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHE--GFKEVYQLEGGIITYG 210 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHc--CCCcEEEecchHHHHH
Confidence 4678999999988888888888876 884 899999986543
No 303
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.69 E-value=85 Score=29.86 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHhcCC-----CCceEeecCCCCHHHHHHHHHHHhc---CCcEE
Q 012877 6 EQKLDMLWSFIKAHLN-SKILVFLTSCKQVKYVFEAFKKLRP-----GIPLMCLYGRMKQDRRMAIYAQFCE---KRSVL 76 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~-~KiIVF~sS~k~v~~l~~~L~~l~~-----gi~v~~LHG~msq~~R~~il~~F~~---~~~VL 76 (454)
..++.-|...|..... ...||.|=-.-.+-|+..+++.+.- -+.+..+|+++++.....++..... ...||
T Consensus 18 ~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVL 97 (178)
T COG0634 18 KARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVL 97 (178)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEE
Confidence 3466667777766553 5666666666778889998888631 1246678999988877777777665 55789
Q ss_pred Eecccccccccc
Q 012877 77 FCTDVASRGLDF 88 (454)
Q Consensus 77 VaTDvaaRGLD~ 88 (454)
+--|++..|..+
T Consensus 98 iVeDIiDsG~TL 109 (178)
T COG0634 98 IVEDIIDSGLTL 109 (178)
T ss_pred EEecccccChhH
Confidence 989988888887
No 304
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=25.42 E-value=86 Score=32.17 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=28.6
Q ss_pred CCccEEEecCCCCChhHHHHHHhccccC----C-CCceEEEEeCcchHHHHHHHHHc
Q 012877 90 KAVDWVVQVDCPEDVASYIHRVGRTARY----N-SGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 90 p~Vd~VIq~D~P~~~~~YIhRvGRtgR~----g-~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
|++.+++|-.||..+-..-.-+|=|+.. . ..+. -|+-..|.+++.+|...
T Consensus 185 P~a~vlvHPEC~~ev~~~AD~vGSTs~ii~~v~~~~~~--~~iIgTE~gl~~~L~~~ 239 (296)
T PF02445_consen 185 PDAKVLVHPECPPEVVELADFVGSTSGIIKYVKESPAK--EFIIGTEIGLVHRLKKE 239 (296)
T ss_dssp TTSEEEE-TTS-HHHHCT-SEE--HHHHHHHCCG-S----EEEEES-CHHHHHHHHH
T ss_pred cCCEEEECCCCCHHHHHHhhhcCCHHHHHHHHHhCCCC--eEEEEecchHHHHHHHH
Confidence 8899999999998776666666666532 1 1222 34444566889888876
No 305
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=25.08 E-value=2.8e+02 Score=33.42 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=39.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCcEEEecc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRSVLFCTD 80 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~VLVaTD 80 (454)
.+++||.|+..-.-.+.. .|.+..|.+.++.+||. +..|..+...+.. ...|+|+|-
T Consensus 219 ~gp~LIVvP~SlL~nW~~-Ei~kw~p~l~v~~~~G~--~~eR~~~~~~~~~~~~~dVvITSY 277 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMN-EIRRFCPVLRAVKFHGN--PEERAHQREELLVAGKFDVCVTSF 277 (1033)
T ss_pred CCCEEEEeChHHHHHHHH-HHHHHCCCCceEEEeCC--HHHHHHHHHHHhcccCCCcceecH
Confidence 568999999765444444 46666788999999996 4455555544443 677888873
No 306
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=24.87 E-value=81 Score=31.53 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 44 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l 44 (454)
.+|..-..+|.......-|+|++|+.....+...+...
T Consensus 56 ~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~ 93 (249)
T PTZ00254 56 EKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQY 93 (249)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 35555566665544455578999998887777666654
No 307
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=24.21 E-value=2.3e+02 Score=25.52 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=6.6
Q ss_pred CCCCeeeec
Q 012877 302 PLGTRLVFD 310 (454)
Q Consensus 302 ~~~~k~~fd 310 (454)
....-|+||
T Consensus 8 ~~~~ev~FD 16 (137)
T PF09805_consen 8 KKKEEVVFD 16 (137)
T ss_pred CCCceEEcC
Confidence 346789998
No 308
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=24.01 E-value=2.1e+02 Score=29.79 Aligned_cols=49 Identities=22% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 20 LNSKILVFLT-SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 20 ~~~KiIVF~s-S~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
.+.++||||. +...+..++..|... |+.+..|.||+... |..++..+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~--G~~v~~L~GG~~aw-r~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEA--GIDVPRLEGGYKAY-RRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHc--CCCcEEEcCCHHHH-HHhhHHHHhh
Confidence 4678999994 556677778888876 88899999998775 4555555553
No 309
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=23.53 E-value=4.8e+02 Score=22.99 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=41.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHh-----------c--CCcEEEecccccccc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC-----------E--KRSVLFCTDVASRGL 86 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~-----------~--~~~VLVaTDvaaRGL 86 (454)
.+.+++|-|+-...+..+...+.+. .|+..+......+|. . ..-||++..|.+-+.
T Consensus 29 ~~~P~iV~fdmk~tld~F~~q~~~~-----------~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv~Ga~ 97 (112)
T TIGR02744 29 LNSPVTVAFDMKQTLDAFFDSASQK-----------KLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVVSGAV 97 (112)
T ss_pred cCCCeEEEEecHHHHHHHHHHHhhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhhcCCC
Confidence 3678899899998888887776543 466666666666665 3 224777778888788
Q ss_pred cc
Q 012877 87 DF 88 (454)
Q Consensus 87 D~ 88 (454)
||
T Consensus 98 DI 99 (112)
T TIGR02744 98 DI 99 (112)
T ss_pred CC
Confidence 88
No 310
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=23.44 E-value=2.5e+02 Score=21.54 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=35.6
Q ss_pred EEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccc
Q 012877 24 ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRG 85 (454)
Q Consensus 24 iIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRG 85 (454)
.|+.|.....+..+...+. .+..++.+.|..........+..+.....|+|+||-=..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~---~~~~~~~~~G~~~~~~~~~~l~~~~~~~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGG---FGGNVVALGGHLLKKEIIKLLKRLAKKKEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcC---CCEEEEEEeeeecHHHHHHHHHHHhcCCEEEEEcCCChhH
Confidence 4677777777766666553 1356677767654444455555543335688998854444
No 311
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=22.54 E-value=1.9e+02 Score=32.16 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
++.-+|....+.++||.|++.....+..++=+.......++.+||. .|...++.|.+ +.|+++|-
T Consensus 221 tIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~----~R~~nikel~~-YDvVLTty 285 (791)
T KOG1002|consen 221 TIALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGA----KRDKNIKELMN-YDVVLTTY 285 (791)
T ss_pred HHHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEecc----cccCCHHHhhc-CcEEEEec
Confidence 3333444455788999999999888888877666556789999996 45555566654 45555553
No 312
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=22.47 E-value=1.3e+02 Score=29.91 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=30.8
Q ss_pred HHHHHHHh---cCCCcEEEEeCChH-HHHHHHHHHHhcCCCCc-eEeecCCCCHH
Q 012877 11 MLWSFIKA---HLNSKILVFLTSCK-QVKYVFEAFKKLRPGIP-LMCLYGRMKQD 60 (454)
Q Consensus 11 ~L~~~Lk~---~~~~KiIVF~sS~k-~v~~l~~~L~~l~~gi~-v~~LHG~msq~ 60 (454)
.+..++.. ....++||||.+.. .+-.++-.|..+ |+. +..|.|+++.-
T Consensus 74 ~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~--G~~~v~~l~GG~~~W 126 (281)
T PRK11493 74 TFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTF--GVEKVSILAGGLAGW 126 (281)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHh--cCCcEEEcCCCHHHH
Confidence 34444544 34678999998743 244455566665 765 77899997653
No 313
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=3.1e+02 Score=28.90 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCCCceEeecCCCCH-HHHHHHHHHHhc
Q 012877 32 KQVKYVFEAFKKLRPGIPLMCLYGRMKQ-DRRMAIYAQFCE 71 (454)
Q Consensus 32 k~v~~l~~~L~~l~~gi~v~~LHG~msq-~~R~~il~~F~~ 71 (454)
..+..|..-|+++ +.-|....- ..+...+.+|-.
T Consensus 38 ~~~~~L~~DlR~i------MeP~TA~~LkerK~N~iKDfv~ 72 (405)
T KOG2963|consen 38 RSLKQLTLDLRRI------MEPHTASNLKERKRNKLKDFVV 72 (405)
T ss_pred ccHHHHHHHHHHh------hCcchhhHHHHHhhhhhhhHHh
Confidence 3445555556554 222322222 234456666754
No 314
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=22.10 E-value=5.3e+02 Score=25.89 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeec-CCCCHHHHHHHHHHHhc-CCcEEEe
Q 012877 9 LDMLWSFIKAHL--NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY-GRMKQDRRMAIYAQFCE-KRSVLFC 78 (454)
Q Consensus 9 l~~L~~~Lk~~~--~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LH-G~msq~~R~~il~~F~~-~~~VLVa 78 (454)
.++...+++... +.++-++=.+...++.....|++..|++.+...| |=.+..+...++++-.. +.+||+.
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~V 167 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLV 167 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEE
Confidence 345556665433 2444444455667788888999999999888877 66666666788888888 7776654
No 315
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.85 E-value=2.1e+02 Score=30.45 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
+.=++||.+|+..+-.+++.|..+- -++.+..+.|+++.-..... ......|+|||.
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~---L~~rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI---LSDRPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhh---cccCCCeEecCc
Confidence 4568999999999999999987652 25788899999876322211 112678999986
No 316
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=21.76 E-value=2.8e+02 Score=32.26 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=40.7
Q ss_pred HHHhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCC-----CCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 15 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGR-----MKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 15 ~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~-----msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
++....+..++|.+++...+...++.+..+. -|+.+.+++++ +....|..++ .+.|+++|.-
T Consensus 105 ~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y-----~~dIvygTp~ 173 (762)
T TIGR03714 105 YLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY-----NSDIVYTTNS 173 (762)
T ss_pred HHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC-----CCCEEEECch
Confidence 3444456679999999988887777664431 27888776664 5554544331 4678888864
No 317
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.63 E-value=2.8e+02 Score=26.89 Aligned_cols=36 Identities=8% Similarity=0.220 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhc
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 44 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l 44 (454)
++..-+.+|... ..+-|+||+|+.++..+...+...
T Consensus 54 ~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~ 89 (204)
T PRK04020 54 RIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEV 89 (204)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 455556677664 466799999999887777766654
No 318
>PHA02653 RNA helicase NPH-II; Provisional
Probab=21.60 E-value=2.6e+02 Score=31.98 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=46.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccccccc-ccCCCccE
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGL-DFNKAVDW 94 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l-----~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGL-D~~p~Vd~ 94 (454)
..+++|-++|+..|..++..+.+. .+|.++...+|+++..... .. ....++||+|.-. ++ ++ .++.+
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~---t~-~k~~~Ilv~T~~L--~l~~L-~~v~~ 294 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN---TN-PKPYGLVFSTHKL--TLNKL-FDYGT 294 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh---cc-cCCCCEEEEeCcc--ccccc-ccCCE
Confidence 458999999998888888877642 2466788899998831111 00 0145899998421 11 45 67888
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
||-
T Consensus 295 VVI 297 (675)
T PHA02653 295 VII 297 (675)
T ss_pred EEc
Confidence 885
No 319
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=21.27 E-value=7.9e+02 Score=25.62 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCccEEEecCCCCChhHHHHHHhccccC-----CCCceEEEEeCcchHHHHHHHHHc
Q 012877 90 KAVDWVVQVDCPEDVASYIHRVGRTARY-----NSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 90 p~Vd~VIq~D~P~~~~~YIhRvGRtgR~-----g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
|++..++|=.||..+-..---+|=|+-. ...|.-+++. .|.+++.+|+..
T Consensus 209 Pda~vlvHPEC~~~Vv~~AD~vGST~~ii~~~~~~~~~~~iv~--TE~g~~~~l~~~ 263 (324)
T COG0379 209 PDAEVLVHPECPPEVVELADFVGSTSQIIKAVKASPAQKFIVG--TERGIVHRLQKE 263 (324)
T ss_pred CCCEEEECCCCCHHHHHhccccccHHHHHHHHhcCCCceEEEE--ecHHHHHHHHHH
Confidence 7788888877776543333333333211 1234444443 467888888876
No 320
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=20.86 E-value=2.7e+02 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCh-----HHHHHHHHHHHhcCCCC---ceEeecCCCCH
Q 012877 20 LNSKILVFLTSC-----KQVKYVFEAFKKLRPGI---PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~-----k~v~~l~~~L~~l~~gi---~v~~LHG~msq 59 (454)
...++||||.+. ..+..+...|.+. |+ .+..|.||+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~--G~~~~~v~~l~GG~~~ 110 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKV--GESLPKSYILTGGIKA 110 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhcc--CCCCCeEEEECChhhh
Confidence 346788889752 2344555555544 54 57778888753
No 321
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=20.75 E-value=2.3e+02 Score=29.15 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=29.7
Q ss_pred CcEEEEeC-ChHHHHHHHHHHHhcCCCCceEeecCCCCHH
Q 012877 22 SKILVFLT-SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 60 (454)
Q Consensus 22 ~KiIVF~s-S~k~v~~l~~~L~~l~~gi~v~~LHG~msq~ 60 (454)
.++||||. +...+..++..|..+ |+.+..|.||+...
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~--G~~v~~L~GG~~aw 112 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQI--GFRVPRLEGGYKAY 112 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHc--CCCEEEecChHHHH
Confidence 35999994 666777888889887 88999999998654
No 322
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=20.23 E-value=6.3e+02 Score=23.78 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
+..++|.+|-.+..--+..++.+..|.++++.+..++.-.+-.+.++++..
T Consensus 13 ~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~ 63 (212)
T TIGR00434 13 GGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTE 63 (212)
T ss_pred CCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 446788888778877888888888888999999988887776666777665
No 323
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.19 E-value=8.4e+02 Score=24.68 Aligned_cols=127 Identities=18% Similarity=0.320 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChH----HHHHHHHHHHhcCCCCce----------------------EeecCCCCHHH
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCK----QVKYVFEAFKKLRPGIPL----------------------MCLYGRMKQDR 61 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k----~v~~l~~~L~~l~~gi~v----------------------~~LHG~msq~~ 61 (454)
++...+.-++.......|.|+.... ....+...|.+. |..+ ..|-++++..+
T Consensus 3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~--GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~ 80 (265)
T COG0159 3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEA--GADILELGVPFSDPVADGPTIQAAHLRALAAGVTLED 80 (265)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhC--CCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHH
Confidence 4666677777777777899986654 444444444332 3332 23556889889
Q ss_pred HHHHHHHHhc---CCcEEEec---ccccccccc------CCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeC-
Q 012877 62 RMAIYAQFCE---KRSVLFCT---DVASRGLDF------NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT- 128 (454)
Q Consensus 62 R~~il~~F~~---~~~VLVaT---DvaaRGLD~------~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~- 128 (454)
-.+++..|+. +..+++-| .+..+|++- .-+|+-||--|+|......+...-+ +.|..++++.
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~-----~~gi~~I~lva 155 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE-----KHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH-----HcCCcEEEEeC
Confidence 9999999995 43454444 668888873 2468888999998876653333322 3456555544
Q ss_pred cc-hHHHHHHHHHc
Q 012877 129 PT-EMKMLEKLREA 141 (454)
Q Consensus 129 p~-E~~~l~~L~~~ 141 (454)
|. ....++.+.+.
T Consensus 156 Ptt~~~rl~~i~~~ 169 (265)
T COG0159 156 PTTPDERLKKIAEA 169 (265)
T ss_pred CCCCHHHHHHHHHh
Confidence 33 22566666554
No 324
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=20.08 E-value=4.2e+02 Score=30.65 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecC
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG 55 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG 55 (454)
+++.+++. ...++||..+|.-.|+.|++-+.+. |+.++.+.+
T Consensus 445 IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~t--gLKVvRl~a 486 (935)
T KOG1802|consen 445 IVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT--GLKVVRLCA 486 (935)
T ss_pred HHHHHHHh-cCCceEEEcccchhHHHHHHHHHhc--CceEeeeeh
Confidence 44556654 5678999999999999999999886 666655544
Done!