Query 012877
Match_columns 454
No_of_seqs 412 out of 2777
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 1.7E-29 5.8E-34 228.5 18.8 144 2-148 16-161 (163)
2 3eaq_A Heat resistant RNA depe 100.0 3.5E-29 1.2E-33 236.7 19.2 147 2-151 12-160 (212)
3 1t5i_A C_terminal domain of A 100.0 4.3E-29 1.5E-33 228.6 17.3 146 2-150 12-160 (172)
4 2rb4_A ATP-dependent RNA helic 100.0 7.8E-29 2.7E-33 226.4 17.5 147 2-151 14-169 (175)
5 1fuk_A Eukaryotic initiation f 100.0 1.5E-28 5.2E-33 222.5 16.8 147 2-151 10-159 (165)
6 3i5x_A ATP-dependent RNA helic 100.0 7.7E-28 2.6E-32 255.5 18.8 204 12-222 329-540 (563)
7 3i32_A Heat resistant RNA depe 100.0 9.7E-28 3.3E-32 239.6 18.3 147 2-151 9-157 (300)
8 2jgn_A DBX, DDX3, ATP-dependen 100.0 9.6E-28 3.3E-32 222.5 15.1 136 2-140 26-163 (185)
9 2p6n_A ATP-dependent RNA helic 99.9 2.1E-27 7.3E-32 221.6 16.4 135 2-140 36-172 (191)
10 3sqw_A ATP-dependent RNA helic 99.9 3.2E-27 1.1E-31 253.1 19.2 205 11-222 277-489 (579)
11 2yjt_D ATP-dependent RNA helic 99.9 1.2E-28 4.1E-33 224.4 0.0 144 2-148 10-156 (170)
12 2db3_A ATP-dependent RNA helic 99.9 4.4E-25 1.5E-29 228.8 17.2 125 3-131 283-408 (434)
13 2j0s_A ATP-dependent RNA helic 99.9 1.2E-24 4.1E-29 220.6 17.9 144 6-152 261-406 (410)
14 1s2m_A Putative ATP-dependent 99.9 3.7E-24 1.3E-28 216.0 19.3 146 3-151 240-387 (400)
15 1xti_A Probable ATP-dependent 99.9 5.3E-24 1.8E-28 213.5 18.8 146 3-151 232-380 (391)
16 2i4i_A ATP-dependent RNA helic 99.9 3.1E-24 1E-28 217.4 15.6 135 3-140 257-393 (417)
17 3pey_A ATP-dependent RNA helic 99.9 1.2E-23 4E-28 210.2 18.8 142 5-149 227-378 (395)
18 3fht_A ATP-dependent RNA helic 99.9 9.2E-24 3.2E-28 212.8 17.5 143 5-150 250-401 (412)
19 3eiq_A Eukaryotic initiation f 99.9 3.3E-24 1.1E-28 216.6 14.0 144 5-151 264-409 (414)
20 1hv8_A Putative ATP-dependent 99.9 1.6E-23 5.6E-28 207.1 17.1 143 3-149 221-365 (367)
21 1oyw_A RECQ helicase, ATP-depe 99.9 2.4E-23 8.2E-28 221.7 19.3 135 4-141 219-354 (523)
22 2v1x_A ATP-dependent DNA helic 99.9 1.6E-22 5.6E-27 218.6 16.4 131 6-139 251-383 (591)
23 3fmp_B ATP-dependent RNA helic 99.9 2E-24 7E-29 225.1 0.0 141 6-149 318-467 (479)
24 1fuu_A Yeast initiation factor 99.9 9.9E-24 3.4E-28 211.4 0.0 141 7-150 245-387 (394)
25 1yks_A Genome polyprotein [con 99.9 1.9E-23 6.4E-28 218.0 1.6 193 13-217 170-390 (440)
26 2z0m_A 337AA long hypothetical 99.9 1.2E-21 4.3E-26 191.7 12.1 122 11-140 210-332 (337)
27 2whx_A Serine protease/ntpase/ 99.8 9.5E-23 3.3E-27 221.6 2.3 199 12-221 347-573 (618)
28 1wp9_A ATP-dependent RNA helic 99.8 3E-21 1E-25 195.6 13.2 125 4-132 340-477 (494)
29 2z83_A Helicase/nucleoside tri 99.8 2.9E-23 9.8E-28 217.5 -2.7 193 13-217 183-404 (459)
30 3oiy_A Reverse gyrase helicase 99.8 5.5E-21 1.9E-25 195.0 14.0 123 7-141 239-374 (414)
31 1tf5_A Preprotein translocase 99.8 2.1E-21 7.1E-26 215.3 11.5 126 3-132 412-547 (844)
32 4a2p_A RIG-I, retinoic acid in 99.8 3.1E-21 1.1E-25 202.1 11.9 124 6-132 371-510 (556)
33 3tbk_A RIG-I helicase domain; 99.8 2.8E-21 9.7E-26 201.7 10.5 130 6-138 370-515 (555)
34 1z5z_A Helicase of the SNF2/RA 99.8 1.5E-20 5E-25 184.8 14.3 135 4-140 93-236 (271)
35 2d7d_A Uvrabc system protein B 99.8 4E-20 1.4E-24 202.4 17.4 131 5-139 427-565 (661)
36 3fho_A ATP-dependent RNA helic 99.8 1.4E-21 4.8E-26 206.7 5.2 143 5-150 341-492 (508)
37 2jlq_A Serine protease subunit 99.8 6.1E-22 2.1E-26 206.9 1.7 196 13-220 181-405 (451)
38 3jux_A Protein translocase sub 99.8 3.6E-20 1.2E-24 202.4 15.3 126 3-132 454-589 (822)
39 1c4o_A DNA nucleotide excision 99.8 7.5E-20 2.6E-24 200.3 17.0 133 4-140 420-560 (664)
40 2ykg_A Probable ATP-dependent 99.8 1.9E-20 6.4E-25 203.3 9.9 131 5-138 378-524 (696)
41 3dmq_A RNA polymerase-associat 99.8 2E-19 6.8E-24 204.4 17.5 163 4-168 486-656 (968)
42 4a2q_A RIG-I, retinoic acid in 99.8 5.5E-20 1.9E-24 204.4 12.3 124 6-132 612-751 (797)
43 2fsf_A Preprotein translocase 99.8 1.1E-19 3.8E-24 201.3 13.0 126 3-132 421-585 (853)
44 2wv9_A Flavivirin protease NS2 99.8 1.6E-20 5.4E-25 206.1 5.2 164 13-187 403-595 (673)
45 4gl2_A Interferon-induced heli 99.8 2.8E-19 9.7E-24 194.1 12.6 120 7-130 381-518 (699)
46 4a2w_A RIG-I, retinoic acid in 99.8 3.1E-19 1.1E-23 202.1 11.9 124 6-132 612-751 (936)
47 1nkt_A Preprotein translocase 99.8 6.2E-19 2.1E-23 195.9 13.3 127 3-133 440-620 (922)
48 4ddu_A Reverse gyrase; topoiso 99.8 6.5E-19 2.2E-23 202.5 13.4 125 7-141 296-501 (1104)
49 1gku_B Reverse gyrase, TOP-RG; 99.8 1.3E-18 4.3E-23 199.4 11.7 126 6-141 261-465 (1054)
50 3l9o_A ATP-dependent RNA helic 99.8 4.1E-18 1.4E-22 195.9 14.8 133 6-141 426-609 (1108)
51 2fwr_A DNA repair protein RAD2 99.8 7.7E-19 2.6E-23 182.4 7.9 115 3-125 331-447 (472)
52 2v6i_A RNA helicase; membrane, 99.7 7.1E-19 2.4E-23 182.8 6.2 110 10-128 161-289 (431)
53 2xgj_A ATP-dependent RNA helic 99.7 2.1E-17 7.3E-22 188.5 18.9 131 8-141 330-511 (1010)
54 2xau_A PRE-mRNA-splicing facto 99.7 1E-18 3.6E-23 194.3 7.5 121 10-132 292-445 (773)
55 2va8_A SSO2462, SKI2-type heli 99.7 3.5E-17 1.2E-21 179.2 18.8 124 6-132 239-410 (715)
56 3o8b_A HCV NS3 protease/helica 99.7 1.1E-18 3.8E-23 190.7 5.4 100 20-132 395-516 (666)
57 2eyq_A TRCF, transcription-rep 99.7 1.9E-17 6.5E-22 191.1 14.4 111 20-131 811-923 (1151)
58 1gm5_A RECG; helicase, replica 99.7 2.2E-18 7.5E-23 191.8 6.3 125 7-132 562-699 (780)
59 1z63_A Helicase of the SNF2/RA 99.7 4.9E-17 1.7E-21 170.0 15.2 134 5-140 323-465 (500)
60 2oca_A DAR protein, ATP-depend 99.7 1.3E-17 4.5E-22 174.8 10.7 119 6-128 330-453 (510)
61 2p6r_A Afuhel308 helicase; pro 99.7 7.1E-17 2.4E-21 176.8 16.6 122 8-132 231-390 (702)
62 2zj8_A DNA helicase, putative 99.7 6.3E-17 2.1E-21 177.7 16.2 123 7-132 225-389 (720)
63 4a4z_A Antiviral helicase SKI2 99.7 6.7E-17 2.3E-21 184.2 14.9 134 4-141 319-505 (997)
64 3rc3_A ATP-dependent RNA helic 99.7 1.5E-16 5.1E-21 174.6 16.1 115 22-141 321-455 (677)
65 1z3i_X Similar to RAD54-like; 99.7 4.3E-16 1.5E-20 169.7 17.4 132 6-140 398-540 (644)
66 3h1t_A Type I site-specific re 99.7 2.2E-16 7.6E-21 169.0 11.2 106 12-119 429-545 (590)
67 3mwy_W Chromo domain-containin 99.6 1.5E-15 5.2E-20 169.1 15.0 133 6-141 555-697 (800)
68 4f92_B U5 small nuclear ribonu 99.5 1.6E-14 5.6E-19 172.1 14.0 133 13-146 1146-1324(1724)
69 4f92_B U5 small nuclear ribonu 99.5 5.5E-14 1.9E-18 167.7 10.3 125 21-146 317-489 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 4.6E-11 1.6E-15 136.6 14.2 118 21-141 537-719 (1038)
71 2vl7_A XPD; helicase, unknown 98.3 1.6E-06 5.6E-11 92.3 9.2 83 11-102 375-463 (540)
72 2ipc_A Preprotein translocase 98.2 7.9E-06 2.7E-10 91.6 13.0 128 4-132 424-700 (997)
73 3hgt_A HDA1 complex subunit 3; 97.2 0.001 3.5E-08 66.9 9.6 120 5-132 107-239 (328)
74 4a15_A XPD helicase, ATP-depen 96.9 0.0026 9E-08 68.9 10.2 111 11-128 439-582 (620)
75 3crv_A XPD/RAD3 related DNA he 96.5 0.028 9.5E-07 59.7 13.8 81 12-102 385-473 (551)
76 1gm5_A RECG; helicase, replica 94.5 0.096 3.3E-06 58.3 9.3 79 21-100 417-499 (780)
77 3oiy_A Reverse gyrase helicase 93.6 0.27 9.1E-06 49.3 9.8 81 19-100 62-148 (414)
78 2gxq_A Heat resistant RNA depe 92.8 0.78 2.7E-05 40.8 10.7 74 20-97 71-150 (207)
79 2eyq_A TRCF, transcription-rep 92.2 0.56 1.9E-05 54.3 11.2 78 19-97 650-731 (1151)
80 3ber_A Probable ATP-dependent 92.0 0.65 2.2E-05 43.6 9.5 74 20-97 110-192 (249)
81 2oxc_A Probable ATP-dependent 91.6 0.49 1.7E-05 43.5 8.1 73 20-97 91-172 (230)
82 4ddu_A Reverse gyrase; topoiso 91.5 0.48 1.6E-05 54.7 9.4 81 19-100 119-205 (1104)
83 1vec_A ATP-dependent RNA helic 90.9 0.79 2.7E-05 40.9 8.5 73 21-97 71-152 (206)
84 1t6n_A Probable ATP-dependent 90.8 0.69 2.4E-05 41.9 8.0 72 22-97 83-164 (220)
85 3bor_A Human initiation factor 89.5 0.69 2.4E-05 42.8 7.0 74 20-97 97-179 (237)
86 3fe2_A Probable ATP-dependent 89.3 1.9 6.5E-05 39.8 10.0 73 21-97 102-182 (242)
87 3iuy_A Probable ATP-dependent 88.7 1.8 6.1E-05 39.4 9.2 74 20-97 93-173 (228)
88 2pl3_A Probable ATP-dependent 88.7 1.9 6.5E-05 39.4 9.4 73 20-97 96-177 (236)
89 1qde_A EIF4A, translation init 88.2 0.66 2.3E-05 42.0 5.9 72 21-97 82-161 (224)
90 3fmo_B ATP-dependent RNA helic 86.5 0.56 1.9E-05 45.5 4.5 70 21-98 162-242 (300)
91 4a2p_A RIG-I, retinoic acid in 86.5 1.1 3.8E-05 46.0 7.0 73 21-97 55-136 (556)
92 2db3_A ATP-dependent RNA helic 86.2 3.2 0.00011 42.1 10.2 73 21-97 129-209 (434)
93 2i4i_A ATP-dependent RNA helic 86.0 4 0.00014 40.1 10.6 72 22-97 102-181 (417)
94 1wp9_A ATP-dependent RNA helic 85.9 2.7 9.4E-05 41.4 9.3 73 20-97 51-131 (494)
95 3ly5_A ATP-dependent RNA helic 85.6 5.5 0.00019 37.4 10.9 74 20-97 125-207 (262)
96 1q0u_A Bstdead; DEAD protein, 85.2 0.6 2.1E-05 42.4 3.8 73 21-97 72-156 (219)
97 1s2m_A Putative ATP-dependent 84.6 2.7 9.3E-05 41.2 8.6 74 20-97 88-169 (400)
98 1fuu_A Yeast initiation factor 84.3 3.1 0.00011 40.4 8.8 73 20-97 88-168 (394)
99 1xti_A Probable ATP-dependent 83.8 2.9 0.0001 40.6 8.3 73 21-97 76-158 (391)
100 2v1x_A ATP-dependent DNA helic 83.7 3.4 0.00012 44.2 9.4 59 20-80 83-144 (591)
101 1wrb_A DJVLGB; RNA helicase, D 83.4 4.6 0.00016 37.3 9.1 72 22-97 101-180 (253)
102 3tbk_A RIG-I helicase domain; 83.3 1.2 4.1E-05 45.5 5.5 73 21-97 52-133 (555)
103 1hv8_A Putative ATP-dependent 81.5 5 0.00017 38.3 8.9 73 20-97 73-153 (367)
104 1oyw_A RECQ helicase, ATP-depe 81.5 4.7 0.00016 42.2 9.3 74 21-97 65-145 (523)
105 4a2q_A RIG-I, retinoic acid in 81.3 2.4 8.3E-05 46.6 7.3 73 21-97 296-377 (797)
106 2j0s_A ATP-dependent RNA helic 79.0 5.3 0.00018 39.3 8.3 74 20-97 104-185 (410)
107 1gku_B Reverse gyrase, TOP-RG; 77.8 3.5 0.00012 47.2 7.4 76 20-97 98-181 (1054)
108 2z0m_A 337AA long hypothetical 77.6 11 0.00037 35.5 9.7 72 21-97 56-135 (337)
109 3b6e_A Interferon-induced heli 75.4 2.7 9.3E-05 37.2 4.6 58 21-81 82-141 (216)
110 3dkp_A Probable ATP-dependent 74.4 2.1 7E-05 39.4 3.5 73 21-97 98-181 (245)
111 2oca_A DAR protein, ATP-depend 74.1 4.8 0.00016 41.2 6.6 73 20-100 156-234 (510)
112 3gk5_A Uncharacterized rhodane 72.4 3.5 0.00012 33.5 4.2 37 21-59 55-91 (108)
113 3g5j_A Putative ATP/GTP bindin 72.0 4.9 0.00017 33.1 5.1 37 22-60 90-127 (134)
114 3eiq_A Eukaryotic initiation f 71.5 11 0.00038 36.8 8.3 74 20-97 107-189 (414)
115 1wv9_A Rhodanese homolog TT165 71.4 4.3 0.00015 32.0 4.3 36 22-59 54-89 (94)
116 2ykg_A Probable ATP-dependent 71.2 7.2 0.00025 41.6 7.4 72 22-97 62-142 (696)
117 4gl2_A Interferon-induced heli 71.0 1.5 5.3E-05 46.8 2.1 72 22-97 57-142 (699)
118 3hix_A ALR3790 protein; rhodan 67.8 5.2 0.00018 32.3 4.2 38 20-59 51-89 (106)
119 3i5x_A ATP-dependent RNA helic 67.5 17 0.00058 37.6 9.1 72 22-97 147-232 (563)
120 3iwh_A Rhodanese-like domain p 67.5 3.7 0.00013 33.6 3.2 36 21-58 56-91 (103)
121 3foj_A Uncharacterized protein 66.8 4.7 0.00016 32.1 3.7 37 21-59 56-92 (100)
122 1gmx_A GLPE protein; transfera 66.0 10 0.00035 30.5 5.6 47 12-60 48-96 (108)
123 3eme_A Rhodanese-like domain p 65.0 4.4 0.00015 32.4 3.2 38 20-59 55-92 (103)
124 3sqw_A ATP-dependent RNA helic 64.6 20 0.0007 37.4 9.1 72 22-97 96-181 (579)
125 4a2w_A RIG-I, retinoic acid in 63.3 4.6 0.00016 45.5 4.0 73 21-97 296-377 (936)
126 1c4o_A DNA nucleotide excision 62.7 34 0.0011 37.0 10.6 81 5-86 38-144 (664)
127 2jtq_A Phage shock protein E; 61.3 17 0.00058 27.7 5.9 36 20-58 40-76 (85)
128 1tf5_A Preprotein translocase 60.9 21 0.00071 40.0 8.6 59 17-80 120-180 (844)
129 2fsf_A Preprotein translocase 59.7 16 0.00056 40.9 7.4 59 17-80 111-171 (853)
130 3fht_A ATP-dependent RNA helic 59.2 8.1 0.00028 37.7 4.5 69 21-97 95-174 (412)
131 3d1p_A Putative thiosulfate su 58.3 7.7 0.00026 32.7 3.7 38 20-59 90-128 (139)
132 2hhg_A Hypothetical protein RP 58.2 8.1 0.00028 32.4 3.8 38 20-59 85-123 (139)
133 1tq1_A AT5G66040, senescence-a 56.5 8.7 0.0003 32.1 3.7 38 20-59 81-119 (129)
134 1nkt_A Preprotein translocase 56.4 28 0.00095 39.4 8.6 60 16-80 147-208 (922)
135 2fz4_A DNA repair protein RAD2 56.3 28 0.00096 32.1 7.5 59 7-80 120-179 (237)
136 2k0z_A Uncharacterized protein 56.1 13 0.00044 30.1 4.6 38 19-58 54-91 (110)
137 3pey_A ATP-dependent RNA helic 55.7 19 0.00064 34.6 6.4 71 20-99 74-153 (395)
138 2fsx_A RV0390, COG0607: rhodan 55.4 10 0.00036 32.4 4.1 37 20-58 79-116 (148)
139 3ilm_A ALR3790 protein; rhodan 55.3 11 0.00037 32.3 4.2 37 21-59 56-93 (141)
140 3flh_A Uncharacterized protein 55.1 6.8 0.00023 32.6 2.7 37 21-59 71-109 (124)
141 4a4z_A Antiviral helicase SKI2 54.4 19 0.00065 40.9 7.1 66 20-97 81-153 (997)
142 2ipc_A Preprotein translocase 53.9 29 0.001 39.4 8.2 61 16-81 115-177 (997)
143 3dmn_A Putative DNA helicase; 53.2 43 0.0015 29.4 7.9 63 21-101 61-124 (174)
144 2d7d_A Uvrabc system protein B 52.8 52 0.0018 35.4 9.9 105 5-111 42-176 (661)
145 1qxn_A SUD, sulfide dehydrogen 52.8 10 0.00036 32.1 3.6 38 20-59 81-119 (137)
146 3nhv_A BH2092 protein; alpha-b 52.7 10 0.00034 32.6 3.5 37 21-59 72-110 (144)
147 3hjh_A Transcription-repair-co 52.7 76 0.0026 33.0 10.8 104 6-111 25-145 (483)
148 2zj8_A DNA helicase, putative 51.5 13 0.00046 40.1 5.0 70 21-97 68-144 (720)
149 1vee_A Proline-rich protein fa 50.5 12 0.00042 31.4 3.7 37 20-58 73-110 (134)
150 2fwr_A DNA repair protein RAD2 49.2 28 0.00095 35.0 6.7 76 7-97 120-198 (472)
151 3l9o_A ATP-dependent RNA helic 49.1 21 0.00072 41.1 6.4 65 20-98 226-297 (1108)
152 2p6r_A Afuhel308 helicase; pro 49.1 19 0.00065 38.7 5.7 70 21-97 68-144 (702)
153 1urh_A 3-mercaptopyruvate sulf 47.6 15 0.00052 34.6 4.2 39 20-60 229-268 (280)
154 4f67_A UPF0176 protein LPG2838 44.5 31 0.001 33.2 5.8 44 15-60 175-219 (265)
155 3fmp_B ATP-dependent RNA helic 44.2 13 0.00044 37.7 3.3 68 22-97 163-241 (479)
156 3mwy_W Chromo domain-containin 43.7 38 0.0013 37.2 7.2 61 19-80 284-353 (800)
157 1z63_A Helicase of the SNF2/RA 43.6 33 0.0011 34.8 6.3 54 18-81 83-137 (500)
158 2l82_A Designed protein OR32; 43.2 78 0.0027 26.8 7.3 46 24-71 5-50 (162)
159 2va8_A SSO2462, SKI2-type heli 42.1 21 0.00073 38.3 4.8 71 20-97 74-151 (715)
160 3i2v_A Adenylyltransferase and 41.8 24 0.00081 28.7 4.0 38 23-60 74-116 (127)
161 3aay_A Putative thiosulfate su 40.1 34 0.0012 32.0 5.3 38 20-59 76-115 (277)
162 1urh_A 3-mercaptopyruvate sulf 39.5 20 0.0007 33.7 3.7 38 20-59 85-124 (280)
163 1uar_A Rhodanese; sulfurtransf 38.6 38 0.0013 31.8 5.4 38 20-59 232-271 (285)
164 1e0c_A Rhodanese, sulfurtransf 38.3 32 0.0011 32.0 4.8 39 19-59 79-119 (271)
165 1e0c_A Rhodanese, sulfurtransf 37.7 23 0.00079 33.1 3.7 38 20-59 222-260 (271)
166 2j6p_A SB(V)-AS(V) reductase; 37.6 48 0.0016 28.4 5.5 50 8-60 55-113 (152)
167 1rif_A DAR protein, DNA helica 37.1 45 0.0016 31.1 5.7 69 21-97 157-231 (282)
168 2xgj_A ATP-dependent RNA helic 36.1 49 0.0017 37.6 6.7 65 20-97 128-198 (1010)
169 3aay_A Putative thiosulfate su 35.9 43 0.0015 31.2 5.3 38 20-59 225-264 (277)
170 4e7p_A Response regulator; DNA 35.8 73 0.0025 25.9 6.2 66 10-80 34-102 (150)
171 3tg1_B Dual specificity protei 34.9 26 0.00088 30.2 3.3 36 21-58 93-137 (158)
172 2eg4_A Probable thiosulfate su 33.7 36 0.0012 31.0 4.2 38 20-59 183-220 (230)
173 3fho_A ATP-dependent RNA helic 33.6 56 0.0019 33.5 6.2 69 21-98 189-266 (508)
174 1uar_A Rhodanese; sulfurtransf 32.9 36 0.0012 31.9 4.3 38 20-59 78-117 (285)
175 3hzu_A Thiosulfate sulfurtrans 32.6 45 0.0015 32.3 4.9 47 11-59 98-149 (318)
176 4dad_A Putative pilus assembly 32.2 1.1E+02 0.0039 24.4 6.8 97 10-115 34-139 (146)
177 1rhs_A Sulfur-substituted rhod 31.1 49 0.0017 31.4 4.9 39 20-60 239-278 (296)
178 2wlr_A Putative thiosulfate su 30.8 50 0.0017 33.2 5.1 38 20-59 202-240 (423)
179 1rhs_A Sulfur-substituted rhod 27.0 44 0.0015 31.7 3.7 38 20-59 91-132 (296)
180 2ouc_A Dual specificity protei 26.8 33 0.0011 28.1 2.5 36 21-58 83-127 (142)
181 1z3i_X Similar to RAD54-like; 26.0 1.3E+02 0.0046 31.9 7.7 57 22-80 115-178 (644)
182 3h1t_A Type I site-specific re 25.6 88 0.003 32.5 6.0 66 20-100 234-311 (590)
183 2xzm_B RPS0E; ribosome, transl 25.4 41 0.0014 32.0 3.1 37 7-43 51-87 (241)
184 3eul_A Possible nitrate/nitrit 25.2 2.5E+02 0.0087 22.5 7.8 7 12-18 31-37 (152)
185 1qtn_A Caspase-8; apoptosis, d 25.0 1.6E+02 0.0056 25.9 6.9 48 21-71 23-91 (164)
186 3o8b_A HCV NS3 protease/helica 25.0 1.4E+02 0.0049 32.3 7.7 67 21-100 257-327 (666)
187 2yan_A Glutaredoxin-3; oxidore 24.9 2.4E+02 0.0084 21.9 8.2 47 21-69 16-68 (105)
188 3ntd_A FAD-dependent pyridine 24.3 56 0.0019 33.7 4.2 37 21-59 524-560 (565)
189 3iz6_A 40S ribosomal protein S 23.8 58 0.002 32.1 3.8 38 7-44 60-97 (305)
190 3h11_B Caspase-8; cell death, 23.0 1.6E+02 0.0055 28.0 6.9 49 20-71 16-85 (271)
191 1okg_A Possible 3-mercaptopyru 22.7 73 0.0025 31.7 4.5 38 20-59 94-133 (373)
192 3ukw_C Bimax1 peptide; arm rep 22.2 32 0.0011 21.3 1.0 12 399-410 17-28 (28)
193 1vi6_A 30S ribosomal protein S 21.8 41 0.0014 31.3 2.3 89 7-104 54-153 (208)
194 3u5c_A 40S ribosomal protein S 21.5 57 0.002 31.3 3.2 37 8-44 56-92 (252)
195 3zyw_A Glutaredoxin-3; metal b 21.4 2.8E+02 0.0095 22.2 7.2 43 21-65 15-63 (111)
196 2dko_A Caspase-3; low barrier 21.2 1.9E+02 0.0065 25.0 6.4 48 21-71 16-77 (146)
197 3olh_A MST, 3-mercaptopyruvate 21.1 54 0.0019 31.4 3.1 38 20-59 253-291 (302)
198 3e4c_A Caspase-1; zymogen, inf 21.1 2.1E+02 0.007 27.8 7.3 47 22-71 61-118 (302)
199 3ha9_A Uncharacterized thiored 20.3 3E+02 0.01 22.5 7.4 36 21-56 37-77 (165)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=1.7e-29 Score=228.55 Aligned_cols=144 Identities=28% Similarity=0.468 Sum_probs=135.6
Q ss_pred ccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 2 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.++...|+..|..+|....+.++||||+|...++.++..|... |+.+..+||+|++.+|..+++.|+. ...|||||+
T Consensus 16 ~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 16 QVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp ECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred ECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4678899999999999888899999999999999999999987 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFT 148 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~ 148 (454)
++++|||+ |++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+..+++.++.. +.++..+
T Consensus 94 ~~~~Gld~-~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 94 VAARGIDI-ENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp GGTTTCCC-SCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred hhhcCCch-hcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 99999999 9999999999999999999999999999999999999999999999998876 6666543
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=3.5e-29 Score=236.69 Aligned_cols=147 Identities=31% Similarity=0.487 Sum_probs=136.5
Q ss_pred ccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 2 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.++...|+..|..++..+.+.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||+
T Consensus 12 ~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 12 PAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp ECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred eCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 4677899999999999988999999999999999999999987 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
++++|||+ |+|++||+||+|+++..|+||+|||||.|+.|.|++|+++.+..++..++.. +.++..+.++
T Consensus 90 ~~~~Gidi-~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 90 VAARGLDI-PQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp TTTCSSSC-CCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred hhhcCCCC-ccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 99999999 9999999999999999999999999999999999999999999999998876 7777666554
No 3
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=4.3e-29 Score=228.57 Aligned_cols=146 Identities=23% Similarity=0.464 Sum_probs=135.5
Q ss_pred ccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 2 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.|+...|+..|..+|+.....++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||+
T Consensus 12 ~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 12 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp ECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred ECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 4678899999999999988899999999999999999999987 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcch-HHHHHHHHHc-CCCcccccc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFTKA 150 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E-~~~l~~L~~~-~i~i~~~~i 150 (454)
++++|||+ |++++||+||+|+++..|+||+|||||.|+.|.+++|+++.+ ..+++.+... ++++.++..
T Consensus 90 ~~~~Gldi-~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 90 LFGRGMDI-ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CCSTTCCG-GGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred chhcCcch-hhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 99999999 999999999999999999999999999999999999999875 4788888776 777766654
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=226.45 Aligned_cols=147 Identities=26% Similarity=0.447 Sum_probs=132.1
Q ss_pred ccCcch-HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~~~-Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
.|+... |+..|..+++.....++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||
T Consensus 14 ~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 14 LCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp ECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 355544 9999999998888889999999999999999999986 8999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCC------CChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P------~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
+++++|||+ |++++||+||+| .++.+|+||+|||||.|+.|.+++|+.+.+..++..+... +.++..+.+.
T Consensus 92 ~~~~~Gid~-~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 169 (175)
T 2rb4_A 92 NVCARGIDV-KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAE 169 (175)
T ss_dssp CSCCTTTCC-TTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECSS
T ss_pred cchhcCCCc-ccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCCc
Confidence 999999999 999999999999 8999999999999999999999999999999888888876 7777766554
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.5e-28 Score=222.48 Aligned_cols=147 Identities=22% Similarity=0.422 Sum_probs=130.9
Q ss_pred ccCcch-HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPLEQ-KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~~~-Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
.|+... |+..|..++....+.++||||+|...++.++..|... |+.+..+||+|++.+|..+++.|+. ...|||||
T Consensus 10 ~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 10 NVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp EEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred ECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 355566 9999999999988899999999999999999999986 8999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
+++++|+|+ |++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+..++..+... +..+..+.+.
T Consensus 88 ~~~~~G~d~-~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 88 DLLARGIDV-QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp GGGTTTCCC-CSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred ChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999 9999999999999999999999999999999999999999999888888765 6666666544
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=7.7e-28 Score=255.49 Aligned_cols=204 Identities=26% Similarity=0.466 Sum_probs=167.2
Q ss_pred HHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccccc
Q 012877 12 LWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 88 (454)
Q Consensus 12 L~~~Lk~-~~~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~ 88 (454)
|...+.. ..+.++||||+|+..++.++..|....+ ++.+..+||+|++.+|..+++.|++ ...|||||+++++|||+
T Consensus 329 l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 408 (563)
T 3i5x_A 329 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 408 (563)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC
T ss_pred HHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc
Confidence 3344433 4578999999999999999999988655 8899999999999999999999999 99999999999999999
Q ss_pred CCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccccccccchHHHHHHHHHh
Q 012877 89 NKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTKRLQPVSGLLAALLV 167 (454)
Q Consensus 89 ~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~~~k~~~i~~~l~~ll~ 167 (454)
|+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.+..+++.|... ++++........ ...+...+...+.
T Consensus 409 -p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 486 (563)
T 3i5x_A 409 -PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP-SEEIKSEVLEAVT 486 (563)
T ss_dssp -TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEECC-CHHHHHHHHHHCC
T ss_pred -ccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccccccCc-cHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999876 777766543222 2334555666677
Q ss_pred hChhHHHHHHHHHHHHHHHhhcCCCcccccccCCC-HHHHHHHcCC-CCCc--cccccc
Q 012877 168 KYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLS-IDEFSASLGL-PMTP--KIRFLN 222 (454)
Q Consensus 168 ~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ld-l~~~A~S~GL-~~~P--~i~~l~ 222 (454)
++++....+.++|++|++++.. .|.+...+ +..+|.+||+ ...| ++++++
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 540 (563)
T 3i5x_A 487 EEPEDISDIVISLISSYRSCIK-----EYRFSERRILPEIASTYGVLLNDPQLKIPVSR 540 (563)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHH-----HHTCCHHHHHHHHHTHHHHHTTCTTCCEEECH
T ss_pred hCHHHHHHHHHHHHHHHHHHHH-----HhCCChHHHHHHHHHHHHHHhCCCCCCCcccH
Confidence 7888888899999999998752 34443332 5678888884 3555 456654
No 7
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=9.7e-28 Score=239.63 Aligned_cols=147 Identities=31% Similarity=0.491 Sum_probs=133.5
Q ss_pred ccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 2 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.|+...|+..|..++..+.+.++||||+|+..++.++..|... |+.+..+||+|++.+|..++..|++ ...|||||+
T Consensus 9 ~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 9 PAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp ECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred ECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 4677899999999999888999999999999999999999886 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
+++||||+ |+|++|||||+|+++.+|+||+|||||.|+.|.|++|+++.+..+++.++.. +..+..+..+
T Consensus 87 va~~Gidi-~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 87 VAARGLDI-PQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp TTTCSTTC-CCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred hhhcCccc-cceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 99999999 9999999999999999999999999999999999999999999999999887 7777766554
No 8
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=9.6e-28 Score=222.49 Aligned_cols=136 Identities=29% Similarity=0.441 Sum_probs=113.6
Q ss_pred ccCcchHHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
.|+...|+..|+.+|+.. .+.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|+. ...|||||
T Consensus 26 ~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 26 WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp ECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred EeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 467889999999999887 4789999999999999999999986 8999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
+++++|||+ |++++||+||+|+++.+|+||+|||||.|+.|.+++|+++.+..+++.+..
T Consensus 104 ~~~~~Gldi-~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 104 AVAARGLDI-SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp C------CC-CSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred ChhhcCCCc-ccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999999998776666654
No 9
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=221.59 Aligned_cols=135 Identities=30% Similarity=0.510 Sum_probs=122.0
Q ss_pred ccCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 2 IVPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 2 vv~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
.|+...|+..|..+|... +.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||+
T Consensus 36 ~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 36 YVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp ECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred EcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 467789999999999765 468999999999999999999987 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcc-hHHHHHHHHH
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT-EMKMLEKLRE 140 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~-E~~~l~~L~~ 140 (454)
++++|||+ |+|++||+||+|+++.+|+||+|||||.|+.|.+++|+++. +..++..|..
T Consensus 113 ~~~~Gldi-~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~ 172 (191)
T 2p6n_A 113 VASKGLDF-PAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKA 172 (191)
T ss_dssp HHHTTCCC-CCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHH
T ss_pred chhcCCCc-ccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999987 5666666654
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=3.2e-27 Score=253.10 Aligned_cols=205 Identities=26% Similarity=0.467 Sum_probs=166.8
Q ss_pred HHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccc
Q 012877 11 MLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLD 87 (454)
Q Consensus 11 ~L~~~Lk~-~~~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD 87 (454)
.|...+.. ..+.++||||+|+..++.++..|....+ ++.+..+||+|++.+|..+++.|+. ...|||||+++++|||
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiD 356 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMD 356 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCC
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCC
Confidence 33444443 5578999999999999999999988644 8899999999999999999999999 9999999999999999
Q ss_pred cCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccccccccchHHHHHHHHH
Q 012877 88 FNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANTKRLQPVSGLLAALL 166 (454)
Q Consensus 88 ~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~~~k~~~i~~~l~~ll 166 (454)
+ |+|++||+||+|.++..|+||+|||||.|+.|.|++|+++.+..+++.|+.. ++++....... ....+...+...+
T Consensus 357 i-p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (579)
T 3sqw_A 357 F-PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE-PSEEIKSEVLEAV 434 (579)
T ss_dssp C-TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEEC-CCHHHHHHHHHHC
T ss_pred c-ccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCCC-ccHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999876 67766543322 2233556666777
Q ss_pred hhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCC-HHHHHHHcCC-CCCc--cccccc
Q 012877 167 VKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLS-IDEFSASLGL-PMTP--KIRFLN 222 (454)
Q Consensus 167 ~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ld-l~~~A~S~GL-~~~P--~i~~l~ 222 (454)
.++++....+.+++++|++++. ..|.+...+ +..+|..||+ ...| .+++++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 489 (579)
T 3sqw_A 435 TEEPEDISDIVISLISSYRSCI-----KEYRFSERRILPEIASTYGVLLNDPQLKIPVSR 489 (579)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-----HHHTCCHHHHHHHHHHHHHHHTTCTTCCEEECH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH-----HHhCCCcccHHHHHHHHHHHHhCCCCCCCccch
Confidence 7788888888899999999864 234444444 4678888775 3444 455544
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.90 E-value=1.2e-28 Score=224.42 Aligned_cols=144 Identities=28% Similarity=0.433 Sum_probs=132.3
Q ss_pred ccCc-chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec
Q 012877 2 IVPL-EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT 79 (454)
Q Consensus 2 vv~~-~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT 79 (454)
.++. ..|+..|..+++...+.++||||+|...++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||
T Consensus 10 ~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 10 RADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 3555 789999999998888889999999999999999999886 8999999999999999999999999 99999999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFT 148 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~ 148 (454)
+++++|||+ |++++||+||+|+++..|+||+|||||.|+.|.+++|+.+.+..++..+... +.++...
T Consensus 88 ~~~~~Gid~-~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (170)
T 2yjt_D 88 DVAARGIDI-PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKAR 156 (170)
Confidence 999999999 9999999999999999999999999999999999999999998888888765 5554443
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.92 E-value=4.4e-25 Score=228.81 Aligned_cols=125 Identities=28% Similarity=0.495 Sum_probs=117.9
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|...|+.+|...... +||||+|+..++.++..|... |+++..+||++++.+|..+++.|++ ...|||||++
T Consensus 283 ~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 283 VNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp CCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred eCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh
Confidence 45678999999999877654 999999999999999999986 9999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcch
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE 131 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E 131 (454)
++||||| |+|++|||||+|.++.+|+||+|||||.|+.|.|++|+++.+
T Consensus 360 ~~rGlDi-~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 360 ASRGLDI-KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp GTSSCCC-TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred hhCCCCc-ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 9999999 999999999999999999999999999999999999999754
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=1.2e-24 Score=220.59 Aligned_cols=144 Identities=26% Similarity=0.485 Sum_probs=134.7
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaR 84 (454)
..|+..|..++......++||||+|...++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||+++++
T Consensus 261 ~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 261 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 348999999999888889999999999999999999986 8999999999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccccc
Q 012877 85 GLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKANT 152 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~~ 152 (454)
|||+ |+|++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...++.+... +..+.++.++.
T Consensus 339 Gidi-~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 339 GLDV-PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp SCCC-TTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred cCCc-ccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 9999 9999999999999999999999999999999999999999999999999876 77777766543
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=3.7e-24 Score=216.02 Aligned_cols=146 Identities=27% Similarity=0.454 Sum_probs=136.2
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|+..|..++......++||||+|...++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||++
T Consensus 240 ~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (400)
T 1s2m_A 240 VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp CCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred echhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 345678999999999888899999999999999999999987 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
+++|||+ |++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+. ++++.++...
T Consensus 318 ~~~Gidi-p~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 318 LTRGIDI-QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp SSSSCCC-TTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred cccCCCc-cCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999 9999999999999999999999999999999999999999999889988876 8887776543
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.91 E-value=5.3e-24 Score=213.52 Aligned_cols=146 Identities=23% Similarity=0.465 Sum_probs=134.7
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|...|..++......++||||+|...+..++..|... |+.+..+||+|++.+|..+++.|++ ...|||||++
T Consensus 232 ~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 232 LKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp CCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred cCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 456788999999999988899999999999999999999986 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH-HHHHHHHHc-CCCccccccc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~-~~l~~L~~~-~i~i~~~~i~ 151 (454)
+++|||+ |++++||+|++|+++..|+||+||+||.|+.|.+++|+.+.+. .+++.+... ++++.++...
T Consensus 310 ~~~Gidi-~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 310 FGRGMDI-ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CSSCBCC-TTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred hhcCCCc-ccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999 9999999999999999999999999999999999999998755 788888776 7777766543
No 16
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=217.40 Aligned_cols=135 Identities=29% Similarity=0.448 Sum_probs=123.4
Q ss_pred cCcchHHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 3 VPLEQKLDMLWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
++...|...|..+++.. .+.++||||+|...++.++..|... |+.+..+||+|++.+|..+++.|++ ...|||||+
T Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 257 VEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp CCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred eccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 45678999999999876 4678999999999999999999986 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
++++|||+ |+|++||+||+|.++..|+||+||+||.|+.|.|++|+++.+..++..+..
T Consensus 335 ~~~~Gidi-p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 335 VAARGLDI-SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHHTTSCC-CCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred hhhcCCCc-ccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999998766665543
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=1.2e-23 Score=210.16 Aligned_cols=142 Identities=27% Similarity=0.461 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
...|+..|..++......++||||+|+..++.++..|+.. ++.+..+||+|++.+|..+++.|++ ...|||||++++
T Consensus 227 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 304 (395)
T 3pey_A 227 EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLA 304 (395)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGS
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 4568888888888888899999999999999999999987 8999999999999999999999999 999999999999
Q ss_pred cccccCCCccEEEecCCCC------ChhHHHHHHhccccCCCCceEEEEeCcchH-HHHHHHHHc-C-CCccccc
Q 012877 84 RGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTEM-KMLEKLREA-K-IPIHFTK 149 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P~------~~~~YIhRvGRtgR~g~~G~ail~l~p~E~-~~l~~L~~~-~-i~i~~~~ 149 (454)
+|||+ |+|++||+||+|+ ++..|+||+||+||.|+.|.+++|+.+.+. .++..+... + +.+..+.
T Consensus 305 ~Gidi-p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 305 RGIDI-PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp SSCCC-TTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred cCCCc-ccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 99999 9999999999999 999999999999999999999999997655 778888776 3 5555444
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=9.2e-24 Score=212.83 Aligned_cols=143 Identities=28% Similarity=0.486 Sum_probs=130.1
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
...|+..|..++......++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++ ...|||||++++
T Consensus 250 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 250 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 3578999999999888899999999999999999999987 8999999999999999999999999 999999999999
Q ss_pred cccccCCCccEEEecCCCC------ChhHHHHHHhccccCCCCceEEEEeCcch-HHHHHHHHHc-CCCcccccc
Q 012877 84 RGLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFTKA 150 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P~------~~~~YIhRvGRtgR~g~~G~ail~l~p~E-~~~l~~L~~~-~i~i~~~~i 150 (454)
+|||+ |+|++||+||+|+ +...|+||+||+||.|+.|.+++|+.+.+ ..+++.+... +..+..+..
T Consensus 328 ~Gidi-p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 328 RGIDV-EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp SSCCC-TTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred cCCCc-cCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999 9999999999995 67899999999999999999999999876 5888888776 666666543
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=216.63 Aligned_cols=144 Identities=26% Similarity=0.455 Sum_probs=119.1
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
...|+..|..++......++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++ ...|||||++++
T Consensus 264 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 264 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp STTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred HHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 3458999999999888899999999999999999999986 8999999999999999999999999 999999999999
Q ss_pred cccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccccc
Q 012877 84 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKAN 151 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i~ 151 (454)
+|||+ |+|++||+||+|.++..|+||+||+||.|+.|.|++|+++.+...++.+... +..+.++.++
T Consensus 342 ~Gidi-p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 342 RGIDV-QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp --CCG-GGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred cCCCc-cCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999 9999999999999999999999999999999999999999999999988876 7777666544
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.6e-23 Score=207.06 Aligned_cols=143 Identities=27% Similarity=0.459 Sum_probs=132.3
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
++...|+..|..++. ..+.++||||+|...++.++..|... |+.+..+||++++.+|..+++.|++ ...|||||++
T Consensus 221 ~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 297 (367)
T 1hv8_A 221 VNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV 297 (367)
T ss_dssp CCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred eChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 455678999999886 56778999999999999999999987 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCccccc
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTK 149 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~ 149 (454)
+++|+|+ |++++||+|++|+++.+|+||+||+||.|+.|.+++++++.+...+..+... +..+..+.
T Consensus 298 ~~~Gid~-~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 298 MSRGIDV-NDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHHCCC-SCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred hhcCCCc-ccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999 9999999999999999999999999999999999999999999999988776 77776654
No 21
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.90 E-value=2.4e-23 Score=221.70 Aligned_cols=135 Identities=20% Similarity=0.350 Sum_probs=127.7
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA 82 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva 82 (454)
+...++..|..+|..+.+.++||||+|++.++.++..|+.. |+.+..+||+|++.+|..+++.|.+ ...|||||+++
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~ 296 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296 (523)
T ss_dssp ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 44678899999999888889999999999999999999987 8999999999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc
Q 012877 83 SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 83 aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
++|||+ |+|++|||||+|.+++.|+||+||+||.|..|.|++|+.+.+..+++.+...
T Consensus 297 ~~GiD~-p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 297 GMGINK-PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp CTTTCC-TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred hCCCCc-cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999 9999999999999999999999999999999999999999999888877664
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=1.6e-22 Score=218.62 Aligned_cols=131 Identities=15% Similarity=0.255 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 6 EQKLDMLWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~-~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
..++..|..+|.. +.+.++||||+|++.++.++..|... |+.+..+||+|++.+|..+++.|.. ...|||||++++
T Consensus 251 ~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~ 328 (591)
T 2v1x_A 251 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328 (591)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC
T ss_pred HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 3567788888864 36789999999999999999999986 9999999999999999999999999 999999999999
Q ss_pred cccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHH
Q 012877 84 RGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 139 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~ 139 (454)
+|||+ |+|++||+|++|.+++.|+||+|||||.|..|.|++|+.+.+...+..+.
T Consensus 329 ~GID~-p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 329 MGIDK-PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TTCCC-SCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred cCCCc-ccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999987777664
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=2e-24 Score=225.07 Aligned_cols=141 Identities=28% Similarity=0.497 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASR 84 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaR 84 (454)
..|+..|..++......++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++
T Consensus 318 ~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~ 395 (479)
T 3fmp_B 318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 395 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcccccc
Confidence 568888888888777889999999999999999999987 8899999999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEecCCCC------ChhHHHHHHhccccCCCCceEEEEeCcch-HHHHHHHHHc-CCCccccc
Q 012877 85 GLDFNKAVDWVVQVDCPE------DVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFTK 149 (454)
Q Consensus 85 GLD~~p~Vd~VIq~D~P~------~~~~YIhRvGRtgR~g~~G~ail~l~p~E-~~~l~~L~~~-~i~i~~~~ 149 (454)
|||| |+|++||+||+|. +...|+||+|||||.|+.|.|++|+.+.+ ..+++.+... +..+..+.
T Consensus 396 GlDi-p~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 396 GIDV-EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCcc-ccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 9999 9999999999995 66899999999999999999999999876 5788887665 55555543
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.87 E-value=9.9e-24 Score=211.37 Aligned_cols=141 Identities=22% Similarity=0.424 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG 85 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRG 85 (454)
.|...|..++......++||||+|...++.++..|... ++.+..+||+|++.+|..+++.|++ ...|||||+++++|
T Consensus 245 ~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 322 (394)
T 1fuu_A 245 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcC
Confidence 37778888887777889999999999999999999886 8999999999999999999999999 99999999999999
Q ss_pred cccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHHc-CCCcccccc
Q 012877 86 LDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLREA-KIPIHFTKA 150 (454)
Q Consensus 86 LD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~~-~i~i~~~~i 150 (454)
+|+ |++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+..++..+... +.++..+..
T Consensus 323 ldi-~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 323 IDV-QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCc-ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 999 9999999999999999999999999999999999999999998888888775 666655443
No 25
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.86 E-value=1.9e-23 Score=217.95 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=141.1
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 91 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~ 91 (454)
+.+|... +.++||||+|+..++.+++.|+.. ++.+..+||. +|..++..|++ +..|||||+++++|||+ |
T Consensus 170 ~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDi-p- 240 (440)
T 1yks_A 170 HDWILAD-KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANL-C- 240 (440)
T ss_dssp CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSS----SCC--------CCCSEEEESSSTTCCTTC-C-
T ss_pred HHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecch----hHHHHHhhhcCCCceEEEECChhheeecc-C-
Confidence 3444443 678999999999999999999987 8999999993 58899999999 99999999999999999 8
Q ss_pred ccEEEe-------------------cCCCCChhHHHHHHhccccC-CCCceEEEEe---CcchHHHHHHHHHcCCCcccc
Q 012877 92 VDWVVQ-------------------VDCPEDVASYIHRVGRTARY-NSGGRSVLFL---TPTEMKMLEKLREAKIPIHFT 148 (454)
Q Consensus 92 Vd~VIq-------------------~D~P~~~~~YIhRvGRtgR~-g~~G~ail~l---~p~E~~~l~~L~~~~i~i~~~ 148 (454)
|++||+ |++|.++++|+||+|||||. |+.|.|++|+ ++.+..++..++.. +.+...
T Consensus 241 v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~-~~~~~~ 319 (440)
T 1yks_A 241 VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS-MLLDNM 319 (440)
T ss_dssp CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH-HHHTTS
T ss_pred ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH-hccccc
Confidence 999996 99999999999999999997 6899999996 67776677766653 222222
Q ss_pred ccccccc----chHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcc
Q 012877 149 KANTKRL----QPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 217 (454)
Q Consensus 149 ~i~~~k~----~~i~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~ 217 (454)
.+..... ...+..+ ..+..+..+...+..+|.+|++++.... ...|++.++.+...+.+|++.++|.
T Consensus 320 ~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (440)
T 1yks_A 320 EVRGGMVAPLYGVEGTKT-PVSPGEMRLRDDQRKVFRELVRNCDLPV-WLSWQVAKAGLKTNDRKWCFEGPEE 390 (440)
T ss_dssp CCGGGCCCCCSTTHHHHS-SSCTTTTCCCHHHHHHHHHHHHTTCCCH-HHHHHHHHTTCCTTCCGGGSCSCGG
T ss_pred cccccccccccchhhccC-CCCCcccccChhHHHHHHHHHHhcCCch-hhhhhhhhcCCceeeeeEEecCCCc
Confidence 2221111 1111111 2244466777889999999999854221 2357788888888889999999987
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.2e-21 Score=191.68 Aligned_cols=122 Identities=30% Similarity=0.506 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccC
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFN 89 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~ 89 (454)
.+...+..+.+.++||||+|...++.++..|. .+..+||+|++.+|..+++.|++ ...|||||+++++|||+
T Consensus 210 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~- 282 (337)
T 2z0m_A 210 SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDI- 282 (337)
T ss_dssp HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCC-
T ss_pred HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCc-
Confidence 34466777788999999999999998888774 57899999999999999999999 99999999999999999
Q ss_pred CCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 90 KAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 90 p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
|++++||+|++|+++..|+||+||+||.|+.|.+++|+. .+..+++.+..
T Consensus 283 ~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 283 PLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp CCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred cCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 999999999999999999999999999999999999999 77778777654
No 27
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=9.5e-23 Score=221.60 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=145.9
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCC
Q 012877 12 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK 90 (454)
Q Consensus 12 L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p 90 (454)
++.+|... ..++||||+|+..++.+++.|+.. ++.+..+||. +|..+++.|++ ...||||||+++||||| |
T Consensus 347 ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi-~ 418 (618)
T 2whx_A 347 GFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANF-R 418 (618)
T ss_dssp SCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCC-C
T ss_pred HHHHHHhC-CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCccc-C
Confidence 44455443 678999999999999999999987 8999999995 68889999999 99999999999999999 8
Q ss_pred CccEE--------------------EecCCCCChhHHHHHHhccccCCC-CceEEEEeC---cchHHHHHHHHHcCCCcc
Q 012877 91 AVDWV--------------------VQVDCPEDVASYIHRVGRTARYNS-GGRSVLFLT---PTEMKMLEKLREAKIPIH 146 (454)
Q Consensus 91 ~Vd~V--------------------Iq~D~P~~~~~YIhRvGRtgR~g~-~G~ail~l~---p~E~~~l~~L~~~~i~i~ 146 (454)
|++| ||||+|.+.++|+||+|||||.|. .|.|++|++ +.+..++..++.. +.+.
T Consensus 419 -v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~-i~l~ 496 (618)
T 2whx_A 419 -AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK-MLLD 496 (618)
T ss_dssp -CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH-HHHT
T ss_pred -ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH-hccc
Confidence 9998 888889999999999999999964 999999998 7777777777664 2332
Q ss_pred cccccccccchHHHHHH---HHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcccccc
Q 012877 147 FTKANTKRLQPVSGLLA---ALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRFL 221 (454)
Q Consensus 147 ~~~i~~~k~~~i~~~l~---~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~l 221 (454)
.+.+.......+....+ ..+.....+...+..+|.+|++.+.. ...-.|.+..+++..-+++|++.++|.-..+
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~ll~~~~~-~~~l~~~v~~~~l~~~~~~w~~~~~~~~~~~ 573 (618)
T 2whx_A 497 NIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDL-PVWLSYKVASAGISYKDREWCFTGERNNQIL 573 (618)
T ss_dssp TCCCTTCCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTTCC-CHHHHHHHHHTTCCTTCCGGGTCCCGGGCCE
T ss_pred cccCCcchhhhccchhhhccccCCceeEccHHHHHHHHHHhhccCC-cHHHHHHHHhcCCCccceeEEecCCCcceee
Confidence 22222211111000000 11122334556678899999987442 1111266777777777788999998874333
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=3e-21 Score=195.60 Aligned_cols=125 Identities=30% Similarity=0.384 Sum_probs=114.6
Q ss_pred CcchHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecC--------CCCHHHHHHHHHHHhc
Q 012877 4 PLEQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG--------RMKQDRRMAIYAQFCE 71 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG--------~msq~~R~~il~~F~~ 71 (454)
....|+..|..+|.. ..+.++||||++...++.++..|... |+.+..+|| +|++.+|..+++.|++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 417 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFAR 417 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhc
Confidence 456799999999987 56889999999999999999999987 899999999 9999999999999999
Q ss_pred -CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 72 -KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 72 -~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
...|||||+++++|||+ |++++||+||+|+++..|+||+||+||.|+ |.++.|+++...
T Consensus 418 ~~~~vLv~T~~~~~Gldl-~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 418 GEFNVLVATSVGEEGLDV-PEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp TSCSEEEECGGGGGGGGS-TTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred CCceEEEECCccccCCCc-hhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 99999999999999999 999999999999999999999999999998 999999998754
No 29
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.85 E-value=2.9e-23 Score=217.49 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=139.3
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 91 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~ 91 (454)
+.+|... +.++||||+|+..++.++..|+.. |+.+..+||. +|..++..|++ ...|||||+++++|||| |+
T Consensus 183 ~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDi-p~ 254 (459)
T 2z83_A 183 YEWITEY-AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANF-GA 254 (459)
T ss_dssp CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCC-SC
T ss_pred HHHHHhc-CCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeec-CC
Confidence 4455444 678999999999999999999987 8999999995 67889999999 99999999999999999 88
Q ss_pred ccEEEe--------------------cCCCCChhHHHHHHhccccCCC-CceEEEEeCcc--hHH---HHHHHHHc--CC
Q 012877 92 VDWVVQ--------------------VDCPEDVASYIHRVGRTARYNS-GGRSVLFLTPT--EMK---MLEKLREA--KI 143 (454)
Q Consensus 92 Vd~VIq--------------------~D~P~~~~~YIhRvGRtgR~g~-~G~ail~l~p~--E~~---~l~~L~~~--~i 143 (454)
++||+ ||+|.++.+|+||+|||||.|. .|.+++|+.+. +.. .+..+... ++
T Consensus 255 -~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 333 (459)
T 2z83_A 255 -SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNI 333 (459)
T ss_dssp -SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTS
T ss_pred -CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcC
Confidence 99999 7899999999999999999997 99999999886 322 22222211 22
Q ss_pred CcccccccccccchHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCcc
Q 012877 144 PIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPK 217 (454)
Q Consensus 144 ~i~~~~i~~~k~~~i~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~ 217 (454)
.+..-.+ .........++ ..+.....+...+.++|.+|++++-.. ....|++..+++...+++|++.++|.
T Consensus 334 ~~~~~~~-~~~~~p~~~k~-~~~~~~~~l~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (459)
T 2z83_A 334 HMPNGLV-AQLYGPEREKA-FTMDGEYRLRGEEKKNFLELLRTADLP-VWLAYKVASNGIQYTDRKWCFDGPRT 404 (459)
T ss_dssp CCTTSCC-CCCCGGGGGGC-CCCTTTTCCCHHHHHHHHHHHHTSCCC-HHHHHHHHHTTCCTTCCGGGTCSCGG
T ss_pred CChHHHH-HhccCCCcccc-cccCcchhcchHHHHHHHHHHhhcCCC-hhHhHHHhhccCccccceeeeeCCCC
Confidence 2111000 00000000111 111234566778889999999976532 33457777777777788999999885
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=5.5e-21 Score=195.05 Aligned_cols=123 Identities=23% Similarity=0.399 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceE-eecCCCCHHHHHHHHHHHhc-CCcEEEe----cc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM-CLYGRMKQDRRMAIYAQFCE-KRSVLFC----TD 80 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~-~LHG~msq~~R~~il~~F~~-~~~VLVa----TD 80 (454)
.|...|..+|+. .+.++||||+|+..++.++..|+.. |+.+. .+||. .|. ++.|++ ...|||| |+
T Consensus 239 ~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 239 RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHT--TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHc--CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 467788888877 4589999999999999999999987 89998 99995 343 999999 9999999 99
Q ss_pred ccccccccCCC-ccEEEecCCC--CChhHHHHHHhccccCC----CCceEEEEeCcchHHHHHHHHHc
Q 012877 81 VASRGLDFNKA-VDWVVQVDCP--EDVASYIHRVGRTARYN----SGGRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 81 vaaRGLD~~p~-Vd~VIq~D~P--~~~~~YIhRvGRtgR~g----~~G~ail~l~p~E~~~l~~L~~~ 141 (454)
++++|||+ |+ |++||+||+| .++.+|+||+|||||.| +.|.+++|+ .+..++..++..
T Consensus 310 ~~~~GiDi-p~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~ 374 (414)
T 3oiy_A 310 KLTRGVDL-PERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTR 374 (414)
T ss_dssp CCCCCCCC-TTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHH
T ss_pred hhhccCcc-ccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHH
Confidence 99999999 99 9999999999 99999999999999998 589999999 555555555543
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.84 E-value=2.1e-21 Score=215.31 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=111.5
Q ss_pred cCcchHHHHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 3 VPLEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~-~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
++..+|+..|..+|.. + .+.++||||+|+..++.|+..|... |+++.+|||++++.+|..+...|+ ...||||||
T Consensus 412 ~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~--gi~~~vLhg~~~~rEr~ii~~ag~-~g~VlIATd 488 (844)
T 1tf5_A 412 RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK--GIPHQVLNAKNHEREAQIIEEAGQ-KGAVTIATN 488 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT--TCCCEEECSSCHHHHHHHHTTTTS-TTCEEEEET
T ss_pred eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCccHHHHHHHHHcCC-CCeEEEeCC
Confidence 3457899999998865 2 4678999999999999999999987 999999999998888865554443 467999999
Q ss_pred ccccccccCC--------CccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 81 VASRGLDFNK--------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 81 vaaRGLD~~p--------~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
+|+||+|| + ++.+|||||+|.+...|+||+|||||.|.+|.+++|+++.+.
T Consensus 489 mAgRG~DI-~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 489 MAGRGTDI-KLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSTTCCC-CCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ccccCcCc-cccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999999 8 788999999999999999999999999999999999998764
No 32
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.84 E-value=3.1e-21 Score=202.14 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhc----------CCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 6 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKL----------RPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l----------~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
..|+..|..+|.. ..+.++||||+++..++.++..|... ..|.....+||+|++.+|..++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 5689999999875 45789999999999999999999764 125556677888999999999999998
Q ss_pred --CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 72 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 72 --~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+.
T Consensus 451 ~g~~~vLvaT~~~~~GiDi-p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDI-VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp ---CCEEEEEC------------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred cCceEEEEEcCchhcCCCc-hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 67999999999999999 999999999999999999999999 999 88999999998765
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=201.73 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhcC----------CCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 6 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKLR----------PGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l~----------~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
..|+..|..+|.. ..+.++||||+++..++.++..|.... .|.....+||+|++.+|..++++|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 5688899988875 356899999999999999999998751 13455566779999999999999997
Q ss_pred --CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 72 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 72 --~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 450 ~g~~~vLvaT~~~~~GlDl-p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 450 SGDNNILIATSVADEGIDI-AECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp --CCSEEEECCCTTCCEET-TSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCeeEEEEcchhhcCCcc-ccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 67999999999999999 999999999999999999999999 999 89999999999876444333
No 34
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.84 E-value=1.5e-20 Score=184.83 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=102.4
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc--CCc-EEEe
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE--KRS-VLFC 78 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~--~~~-VLVa 78 (454)
....|+..|..+|... .+.++||||++...++.+...|.... |+.+..+||++++.+|..++++|++ ... +|+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 4567999999999876 68899999999999999999998731 8899999999999999999999998 445 7999
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceE--EEEeCcc--hHHHHHHHHH
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS--VLFLTPT--EMKMLEKLRE 140 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a--il~l~p~--E~~~l~~L~~ 140 (454)
|+++++|||+ +.+++||+||+||++..|+||+||++|.|+.+.+ +.|++.. |..+++.+..
T Consensus 172 t~~~g~Glnl-~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 172 VKAGGFGINL-TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp CCTTCCCCCC-TTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhhcCCcCc-ccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999988765 4455554 3445544433
No 35
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.83 E-value=4e-20 Score=202.38 Aligned_cols=131 Identities=26% Similarity=0.354 Sum_probs=118.2
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
...++..|+..|... .+.++||||+|+..++.++..|... |+++..+||++++.+|..+++.|+. ...|||||++
T Consensus 427 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 427 IEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp STTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 345666776666543 4679999999999999999999987 8999999999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCC-----CCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHH
Q 012877 82 ASRGLDFNKAVDWVVQVDC-----PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLR 139 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~-----P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~ 139 (454)
+++|+|+ |+|++||++|+ |.+..+|+||+|||||. ..|.+++|+++.+..++..+.
T Consensus 505 l~~GlDi-p~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 505 LREGLDI-PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CSTTCCC-TTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred hhCCccc-CCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999 99999999998 99999999999999998 789999999998877766554
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.4e-21 Score=206.70 Aligned_cols=143 Identities=27% Similarity=0.437 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS 83 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa 83 (454)
...|...|..++......++||||+|+..+..++..|... ++.+.++||+|++.+|..+++.|++ ...|||||++++
T Consensus 341 ~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~ 418 (508)
T 3fho_A 341 EEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 418 (508)
T ss_dssp CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC---
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhh
Confidence 4568888999998888899999999999999999999886 8999999999999999999999999 999999999999
Q ss_pred cccccCCCccEEEecCCC------CChhHHHHHHhccccCCCCceEEEEeCcch-HHHHHHHHHc-CCCcccccc
Q 012877 84 RGLDFNKAVDWVVQVDCP------EDVASYIHRVGRTARYNSGGRSVLFLTPTE-MKMLEKLREA-KIPIHFTKA 150 (454)
Q Consensus 84 RGLD~~p~Vd~VIq~D~P------~~~~~YIhRvGRtgR~g~~G~ail~l~p~E-~~~l~~L~~~-~i~i~~~~i 150 (454)
+|||+ |+|++||+||+| .++..|+||+||+||.|+.|.+++|+.+.+ ..++..++.. +..+..+..
T Consensus 419 ~GiDi-p~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 419 RGIDV-SQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp --CCC-TTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred cCCCc-cCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999 999999999999 889999999999999999999999998654 4677777665 666666544
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.83 E-value=6.1e-22 Score=206.86 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=135.8
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 91 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~ 91 (454)
..++... ..++||||+|+..++.++..|... |+.+..+||++. ..+++.|++ ...|||||+++++|||| |+
T Consensus 181 ~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDi-p~ 252 (451)
T 2jlq_A 181 FDWITDY-QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANF-RA 252 (451)
T ss_dssp CHHHHHC-CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCC-CC
T ss_pred HHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCC-CC
Confidence 3455444 568999999999999999999986 899999999865 478999999 99999999999999999 88
Q ss_pred ccEEEecC--------------------CCCChhHHHHHHhccccCCC-CceEEEEeCcchH--HHH-----HHHHHcCC
Q 012877 92 VDWVVQVD--------------------CPEDVASYIHRVGRTARYNS-GGRSVLFLTPTEM--KML-----EKLREAKI 143 (454)
Q Consensus 92 Vd~VIq~D--------------------~P~~~~~YIhRvGRtgR~g~-~G~ail~l~p~E~--~~l-----~~L~~~~i 143 (454)
++||||| +|.+..+|+||+|||||.|. .|.+++|+...+. ..+ ..+...++
T Consensus 253 -~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (451)
T 2jlq_A 253 -GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNI 331 (451)
T ss_dssp -SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTC
T ss_pred -CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcC
Confidence 9999999 99999999999999999998 8999888754321 111 12222233
Q ss_pred CcccccccccccchHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCcccccccCCCHHHHHHHcCCCCCccccc
Q 012877 144 PIHFTKANTKRLQPVSGLLAALLVKYPDMQHRAQKAFITYLRSVHIQKDKEVFDVTKLSIDEFSASLGLPMTPKIRF 220 (454)
Q Consensus 144 ~i~~~~i~~~k~~~i~~~l~~ll~~~~el~~~aqrAf~sylrs~~~~~~k~iF~v~~Ldl~~~A~S~GL~~~P~i~~ 220 (454)
.+..--+..- . ...............+...+.++|.+|++.+-... .-.|++..+++...+.+|++.++|.-..
T Consensus 332 ~~~~~~~~~~-~-~~e~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (451)
T 2jlq_A 332 YTPEGIIPTL-F-GPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPV-WLSYKVASAGISYKDREWCFTGERNNQI 405 (451)
T ss_dssp CCTTCCCCCC-C-GGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCCH-HHHHHHHHTTCCTTCCGGGTCSCGGGCC
T ss_pred CChhHhHHhh-c-CCchhhccCCCcccccCchhHHHHHHHHhhcCCcH-HHhHHHHHcCCCcccchhhhcCCCCCee
Confidence 2221100000 0 00000000011123345567789999988764332 4566666666666677888888774333
No 38
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.83 E-value=3.6e-20 Score=202.43 Aligned_cols=126 Identities=22% Similarity=0.244 Sum_probs=109.3
Q ss_pred cCcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 3 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
+...+|...|...|... .+.++||||+|+..++.++..|... |+++.+|||++.+.+|..+...|+ ...|+||||
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~-~g~VtVATd 530 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQ-KGMVTIATN 530 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHS-TTCEEEEET
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCC-CCeEEEEcc
Confidence 45578999999988763 4789999999999999999999987 999999999965555544444333 567999999
Q ss_pred ccccccccCC--------CccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 81 VASRGLDFNK--------AVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 81 vaaRGLD~~p--------~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
+|+||+|| + ++.+||||++|.+...|+||+|||||.|.+|.+++|+++.+.
T Consensus 531 mAgRGtDI-~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 531 MAGRGTDI-KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTCCC-CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhhCCcCc-cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999999 7 567999999999999999999999999999999999999874
No 39
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.82 E-value=7.5e-20 Score=200.32 Aligned_cols=133 Identities=21% Similarity=0.262 Sum_probs=118.8
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD 80 (454)
+...++..|+..|... .+.++||||+|+..++.++..|... |+.+..+||+|++.+|..+++.|+. ...|||||+
T Consensus 420 ~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~ 497 (664)
T 1c4o_A 420 PTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 497 (664)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred cccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC
Confidence 3445667776666543 4779999999999999999999987 8999999999999999999999999 999999999
Q ss_pred ccccccccCCCccEEEecCC-----CCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHHHH
Q 012877 81 VASRGLDFNKAVDWVVQVDC-----PEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKLRE 140 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~-----P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L~~ 140 (454)
++++|+|+ |+|++||++|+ |.+..+|+||+|||||.+ .|.+++|+++.+..+.+.+..
T Consensus 498 ~l~~GlDi-p~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 498 LLREGLDI-PEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp CCCTTCCC-TTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred hhhcCccC-CCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999 99999999998 999999999999999995 899999999988777766643
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.81 E-value=1.9e-20 Score=203.33 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=84.3
Q ss_pred cchHHHHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEee--------cCCCCHHHHHHHHHHHh
Q 012877 5 LEQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCL--------YGRMKQDRRMAIYAQFC 70 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~----~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~L--------HG~msq~~R~~il~~F~ 70 (454)
...|+..|..+|..+ .+.++||||+++..++.++..|.... +++.+..+ ||+|++.+|..++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 457999999999876 57899999999999999999999861 12788888 55999999999999999
Q ss_pred c--CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchHHHHHHH
Q 012877 71 E--KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEMKMLEKL 138 (454)
Q Consensus 71 ~--~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~~~l~~L 138 (454)
. ...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+.+.+......+
T Consensus 458 ~~g~~~vLVaT~v~~~GiDi-p~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDI-AQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCSCSEEEESSCCC----CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred hcCCccEEEEechhhcCCcC-ccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 5 78999999999999999 999999999999999999999999 998 78999999998776444333
No 41
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.81 E-value=2e-19 Score=204.42 Aligned_cols=163 Identities=19% Similarity=0.275 Sum_probs=129.9
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C--CcEEEecc
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K--RSVLFCTD 80 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~--~~VLVaTD 80 (454)
....|+..|..+|....+.++||||+++..++.++..|.... |+.+..+||+|++.+|..++..|++ + ..|||||+
T Consensus 486 ~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 456799999999998889999999999999999999998532 9999999999999999999999999 7 89999999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcch---HHHHHHHHHcCCCcccccccc--ccc
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTE---MKMLEKLREAKIPIHFTKANT--KRL 155 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E---~~~l~~L~~~~i~i~~~~i~~--~k~ 155 (454)
++++|||+ |++++||+||+|+++..|+||+||+||.|+.|.++++....+ ...+..+...++.+....++. ...
T Consensus 565 v~~~GlDl-~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~ 643 (968)
T 3dmq_A 565 IGSEGRNF-QFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIY 643 (968)
T ss_dssp CTTCSSCC-TTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHH
T ss_pred hhhcCCCc-ccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHH
Confidence 99999999 999999999999999999999999999999997666644332 233334433455544333322 122
Q ss_pred chHHHHHHHHHhh
Q 012877 156 QPVSGLLAALLVK 168 (454)
Q Consensus 156 ~~i~~~l~~ll~~ 168 (454)
......+...+..
T Consensus 644 ~~~~~~l~~~l~~ 656 (968)
T 3dmq_A 644 DSVYNDLINYLAS 656 (968)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 2334445555543
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.81 E-value=5.5e-20 Score=204.39 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHhc----------CCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 6 EQKLDMLWSFIKA----HLNSKILVFLTSCKQVKYVFEAFKKL----------RPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~----~~~~KiIVF~sS~k~v~~l~~~L~~l----------~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
..|+..|..+|.. ..+.++||||+++..++.++..|+.. +.|.....+||+|++.+|..++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 5689999999875 56789999999999999999999873 125566778999999999999999998
Q ss_pred --CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 72 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 72 --~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+.
T Consensus 692 ~g~~~vLVaT~~~~~GIDl-p~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDI-VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp --CCSEEEEECC--------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred cCCceEEEEcCchhcCCCc-hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 67999999999999999 999999999999999999999999 999 89999999998765
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.80 E-value=1.1e-19 Score=201.28 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=112.9
Q ss_pred cCcchHHHHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 3 VPLEQKLDMLWSFIKA-H-LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~-~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
++..+|+..|...|.. + .+.++||||+|+..++.++..|... |+++.+|||++.+.+|..+.+.|+. ..|+||||
T Consensus 421 ~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~-G~VtIATn 497 (853)
T 2fsf_A 421 MTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYP-AAVTIATN 497 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTST-TCEEEEES
T ss_pred eCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCC-CeEEEecc
Confidence 4567899999998865 3 4678999999999999999999987 9999999999988888777777765 46999999
Q ss_pred ccccccccCCC--------------------------------c-----cEEEecCCCCChhHHHHHHhccccCCCCceE
Q 012877 81 VASRGLDFNKA--------------------------------V-----DWVVQVDCPEDVASYIHRVGRTARYNSGGRS 123 (454)
Q Consensus 81 vaaRGLD~~p~--------------------------------V-----d~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a 123 (454)
+|+||+|| +. | .+||+|++|.+...|+||+|||||.|.+|.+
T Consensus 498 mAgRGtDI-~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDI-VLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCC-CTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCc-cCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999 65 4 6999999999999999999999999999999
Q ss_pred EEEeCcchH
Q 012877 124 VLFLTPTEM 132 (454)
Q Consensus 124 il~l~p~E~ 132 (454)
++|+++.+.
T Consensus 577 ~~fls~eD~ 585 (853)
T 2fsf_A 577 RFYLSMEDA 585 (853)
T ss_dssp EEEEETTSG
T ss_pred EEEecccHH
Confidence 999998874
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.80 E-value=1.6e-20 Score=206.06 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=124.6
Q ss_pred HHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCC
Q 012877 13 WSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKA 91 (454)
Q Consensus 13 ~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~ 91 (454)
+.+|.. .+.++||||+|+..++.++..|+.. ++.+..|||+ +|..+++.|++ ...|||||+++++|||+ |
T Consensus 403 l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDi-p- 473 (673)
T 2wv9_A 403 FEWITD-YAGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANF-G- 473 (673)
T ss_dssp CHHHHS-CCSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCC-C-
T ss_pred HHHHHh-CCCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceee-C-
Confidence 344433 4679999999999999999999987 8999999994 78999999999 99999999999999999 8
Q ss_pred ccEEEe--------------------cCCCCChhHHHHHHhccccC-CCCceEEEEe---CcchHHHHHHHHHcCCCccc
Q 012877 92 VDWVVQ--------------------VDCPEDVASYIHRVGRTARY-NSGGRSVLFL---TPTEMKMLEKLREAKIPIHF 147 (454)
Q Consensus 92 Vd~VIq--------------------~D~P~~~~~YIhRvGRtgR~-g~~G~ail~l---~p~E~~~l~~L~~~~i~i~~ 147 (454)
|++||| ||+|.++++|+||+|||||. |+.|.|++|+ ++.+..++..++.. +.+..
T Consensus 474 v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~-~~l~~ 552 (673)
T 2wv9_A 474 ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK-ILLDN 552 (673)
T ss_dssp CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH-HHHHT
T ss_pred CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH-Hhhhh
Confidence 999998 67999999999999999999 7899999996 56666555555443 11111
Q ss_pred ccccccc----cchHHHHHHHHHhhChhHHHHHHHHHHHHHHHh
Q 012877 148 TKANTKR----LQPVSGLLAALLVKYPDMQHRAQKAFITYLRSV 187 (454)
Q Consensus 148 ~~i~~~k----~~~i~~~l~~ll~~~~el~~~aqrAf~sylrs~ 187 (454)
+.+.... ...-+..+.. +..+..+...++++|.+|++..
T Consensus 553 ~~~~~g~~~a~~~~~q~~~~~-~~~~~~l~~~a~~~~~~ll~~~ 595 (673)
T 2wv9_A 553 IHLPNGLVAQLYGPERDKTYT-MDGEYRLRGEERKTFLELIKTA 595 (673)
T ss_dssp SCBTTTBCCCCCGGGGGGCCC-CTTTTCCCHHHHHHHHHHHHTS
T ss_pred ccCCchhhhhccchhhhcccc-chhhhhHHHHHHHHHHHHHhcc
Confidence 1111100 0000111111 3456678888999999998864
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=194.15 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhc----C-CCcEEEEeCChHHHHHHHHHHHhc----CCCCceEeecCC--------CCHHHHHHHHHHH
Q 012877 7 QKLDMLWSFIKAH----L-NSKILVFLTSCKQVKYVFEAFKKL----RPGIPLMCLYGR--------MKQDRRMAIYAQF 69 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~----~-~~KiIVF~sS~k~v~~l~~~L~~l----~~gi~v~~LHG~--------msq~~R~~il~~F 69 (454)
.|+..|..+|..+ . +.++||||+|+..++.++..|... ..|+.+..+||+ |++.+|..++++|
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 4556666666543 3 789999999999999999999874 127899999999 9999999999999
Q ss_pred hc-CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcc
Q 012877 70 CE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPT 130 (454)
Q Consensus 70 ~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~ 130 (454)
++ ...|||||+++++|||+ |+|++||+||+|+++..|+||+||+||.| .+++++.+.
T Consensus 461 ~~g~~~VLVaT~~~~~GIDi-p~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 461 RTGKINLLIATTVAEEGLDI-KECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CC---CCSEEECSCCTTSCC-CSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred hcCCCcEEEEccccccCCcc-ccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 99 99999999999999999 99999999999999999999999965543 455555443
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.78 E-value=3.1e-19 Score=202.10 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHhc----------CCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 6 EQKLDMLWSFIKAH----LNSKILVFLTSCKQVKYVFEAFKKL----------RPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~----~~~KiIVF~sS~k~v~~l~~~L~~l----------~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
..|+..|..+|... .+.++||||+|+..++.++..|... ..|.....+||+|++.+|..++++|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 56999999999873 4789999999999999999999875 125556677999999999999999997
Q ss_pred --CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 72 --KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 72 --~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
...|||||+++++|||+ |+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+.
T Consensus 692 ~g~~~VLVaT~~~~eGIDl-p~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDI-VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp --CCSEEEEECC------C-CCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred cCCeeEEEEeCchhcCCcc-hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 67999999999999999 999999999999999999999999 999 88999999988754
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.78 E-value=6.2e-19 Score=195.92 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=111.4
Q ss_pred cCcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 3 VPLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
++..+|+..|...|... .+.++||||+|+..++.|+..|... |+++.+|||++.+.++..+.+.|+. ..|+||||
T Consensus 440 ~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~--Gi~~~vLnak~~~rEa~iia~agr~-G~VtIATn 516 (922)
T 1nkt_A 440 KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR--RIPHNVLNAKYHEQEATIIAVAGRR-GGVTVATN 516 (922)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT--TCCCEEECSSCHHHHHHHHHTTTST-TCEEEEET
T ss_pred eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCC-CeEEEecc
Confidence 34567999999988653 4678999999999999999999997 9999999999887777666666654 47999999
Q ss_pred ccccccccCCCc----------------------------------------------------cEEEecCCCCChhHHH
Q 012877 81 VASRGLDFNKAV----------------------------------------------------DWVVQVDCPEDVASYI 108 (454)
Q Consensus 81 vaaRGLD~~p~V----------------------------------------------------d~VIq~D~P~~~~~YI 108 (454)
+|+||+|| +.+ .+||+|++|.+...|+
T Consensus 517 mAgRGtDI-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~ 595 (922)
T 1nkt_A 517 MAGRGTDI-VLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 595 (922)
T ss_dssp TCSTTCCC-CTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred hhhcCccc-cCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHH
Confidence 99999999 754 5999999999999999
Q ss_pred HHHhccccCCCCceEEEEeCcchHH
Q 012877 109 HRVGRTARYNSGGRSVLFLTPTEMK 133 (454)
Q Consensus 109 hRvGRtgR~g~~G~ail~l~p~E~~ 133 (454)
||+|||||.|.+|.+++|++..+.-
T Consensus 596 qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 596 QLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHhcccccCCCCeeEEEEechhHHH
Confidence 9999999999999999999988763
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.78 E-value=6.5e-19 Score=202.53 Aligned_cols=125 Identities=21% Similarity=0.372 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceE-eecCCCCHHHHHHHHHHHhc-CCcEEEe----cc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM-CLYGRMKQDRRMAIYAQFCE-KRSVLFC----TD 80 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~-~LHG~msq~~R~~il~~F~~-~~~VLVa----TD 80 (454)
.|...|..+|+. .+.++||||+|+..++.++..|+.. |+.+. .+||. |.. ++.|++ ...|||| |+
T Consensus 296 ~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~--g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHT--TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhC--CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCC
Confidence 577888888877 4589999999999999999999987 89998 99993 555 999999 9999999 99
Q ss_pred ccccccccCCC-ccEEEecCCCC---------------------------------------------------------
Q 012877 81 VASRGLDFNKA-VDWVVQVDCPE--------------------------------------------------------- 102 (454)
Q Consensus 81 vaaRGLD~~p~-Vd~VIq~D~P~--------------------------------------------------------- 102 (454)
+++||||| |+ |++|||||+|.
T Consensus 367 vlarGIDi-p~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 367 KLTRGVDL-PERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHCCSCCC-TTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred eeEecCcC-CCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999 99 99999999998
Q ss_pred ---------------ChhHHHHHHhccccCCCCc--eEEEEeCcchHHHHHHHHHc
Q 012877 103 ---------------DVASYIHRVGRTARYNSGG--RSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 103 ---------------~~~~YIhRvGRtgR~g~~G--~ail~l~p~E~~~l~~L~~~ 141 (454)
++.+||||+|||||.|..| .++.++...+...+..|...
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~ 501 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTR 501 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHH
Confidence 8889999999999976543 34444444666666666554
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=1.3e-18 Score=199.43 Aligned_cols=126 Identities=24% Similarity=0.442 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEe----cc
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFC----TD 80 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVa----TD 80 (454)
..|...|..+++.. +.++||||+|+..|+.++..|+.. +.+..+||+|. .+++.|++ ...|||| ||
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC---
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCC
Confidence 45677788888665 578999999999999999999874 89999999984 68899999 9999999 99
Q ss_pred ccccccccCCCc-cEEEecCCC----------------------------------------------------------
Q 012877 81 VASRGLDFNKAV-DWVVQVDCP---------------------------------------------------------- 101 (454)
Q Consensus 81 vaaRGLD~~p~V-d~VIq~D~P---------------------------------------------------------- 101 (454)
+++||||+ |+| ++|||||+|
T Consensus 332 v~~rGIDi-p~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (1054)
T 1gku_B 332 TLVRGLDL-PERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQ 410 (1054)
T ss_dssp ---CCSCC-TTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCS
T ss_pred eeEecccc-CCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999 996 999999999
Q ss_pred -------------CChhHHHHHHhccccCCCCc--eEEEEeCcchHHHHHHHHHc
Q 012877 102 -------------EDVASYIHRVGRTARYNSGG--RSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 102 -------------~~~~~YIhRvGRtgR~g~~G--~ail~l~p~E~~~l~~L~~~ 141 (454)
.++.+|+||+|||||.|..| .+++|+.+.+..++..|...
T Consensus 411 ~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 411 AKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp CSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred ccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 79999999999999998876 48888888888777777664
No 50
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-18 Score=195.94 Aligned_cols=133 Identities=19% Similarity=0.183 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCc------------------------------------
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP------------------------------------ 49 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~------------------------------------ 49 (454)
..++..|+..+......++||||+|+..|+.++..|..+ ++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 503 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL--DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLL 503 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH--HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhh
Confidence 345555666666677789999999999999999988653 111
Q ss_pred ---eEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCC--------ChhHHHHHHhccccC
Q 012877 50 ---LMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE--------DVASYIHRVGRTARY 117 (454)
Q Consensus 50 ---v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~--------~~~~YIhRvGRtgR~ 117 (454)
+..+||+|++..|..++..|+. ...|||||+++++|||+ |+|++||+++.|+ ++..|+||+|||||.
T Consensus 504 ~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi-P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~ 582 (1108)
T 3l9o_A 504 RRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM-PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 582 (1108)
T ss_dssp HHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC---CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCS
T ss_pred hcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC-CCceEEEecCcccCccccccCCHHHHHHhhcccCCC
Confidence 7899999999999999999999 99999999999999999 9999999888754 566799999999999
Q ss_pred C--CCceEEEEeCcc-hHHHHHHHHHc
Q 012877 118 N--SGGRSVLFLTPT-EMKMLEKLREA 141 (454)
Q Consensus 118 g--~~G~ail~l~p~-E~~~l~~L~~~ 141 (454)
| ..|.|++++.+. +...+..+...
T Consensus 583 G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 583 GLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp SSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred CCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 9 689999999876 44666666554
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.75 E-value=7.7e-19 Score=182.38 Aligned_cols=115 Identities=22% Similarity=0.356 Sum_probs=104.5
Q ss_pred cCcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 3 VPLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 3 v~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
+....|+..|..+|..+.+.++||||++...++.++..|. +..+||++++.+|..+++.|++ ...|||||++
T Consensus 331 ~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~ 403 (472)
T 2fwr_A 331 FNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------IPAITHRTSREEREEILEGFRTGRFRAIVSSQV 403 (472)
T ss_dssp HSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSC
T ss_pred hcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCc
Confidence 3456789999999999889999999999999999988773 4579999999999999999999 9999999999
Q ss_pred cccccccCCCccEEEecCCCCChhHHHHHHhccccCCCC-ceEEE
Q 012877 82 ASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSG-GRSVL 125 (454)
Q Consensus 82 aaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~-G~ail 125 (454)
+++|||+ |++++||+||+|+++..|+||+||+||.|.. +.+++
T Consensus 404 ~~~Gldl-p~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 404 LDEGIDV-PDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp CCSSSCS-CCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred hhcCccc-ccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 9999999 9999999999999999999999999999965 45544
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.74 E-value=7.1e-19 Score=182.78 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccccccccc
Q 012877 10 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDF 88 (454)
Q Consensus 10 ~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~ 88 (454)
..++.+|... +.++||||+|+..++.+++.|+.. ++.+..+||+ .|..+++.|++ ...|||||+++++|||+
T Consensus 161 ~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDi 233 (431)
T 2v6i_A 161 NSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANF 233 (431)
T ss_dssp SSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCC
T ss_pred HHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCccc
Confidence 3445666554 568999999999999999999987 8999999998 47789999999 99999999999999999
Q ss_pred CCCccE-----------------EEecCCCCChhHHHHHHhccccCCC-CceEEEEeC
Q 012877 89 NKAVDW-----------------VVQVDCPEDVASYIHRVGRTARYNS-GGRSVLFLT 128 (454)
Q Consensus 89 ~p~Vd~-----------------VIq~D~P~~~~~YIhRvGRtgR~g~-~G~ail~l~ 128 (454)
| +++ ||+++.|.++.+|+||+||+||.|. .|.++++..
T Consensus 234 -p-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 234 -K-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp -C-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred -C-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 8 655 6889999999999999999999985 556666653
No 53
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.1e-17 Score=188.49 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCC---------------------------------------
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI--------------------------------------- 48 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi--------------------------------------- 48 (454)
.+..|+..+......++||||+|+..|+.++..|..+ ++
T Consensus 330 ~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 407 (1010)
T 2xgj_A 330 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL--DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 407 (1010)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTS--CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhC
Confidence 4455666666666779999999999999999988763 22
Q ss_pred ceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----cCC----CCChhHHHHHHhccccCCC
Q 012877 49 PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VDC----PEDVASYIHRVGRTARYNS 119 (454)
Q Consensus 49 ~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D~----P~~~~~YIhRvGRtgR~g~ 119 (454)
.+..+||+|++..|..++..|++ ...|||||+++++|||+ |++++||+ ||. |.++..|+||+|||||.|.
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDi-P~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM-PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTC-CBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTT
T ss_pred CeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCC-CCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCC
Confidence 27889999999999999999999 99999999999999999 99999999 999 9999999999999999996
Q ss_pred --CceEEEEeCcc-hHHHHHHHHHc
Q 012877 120 --GGRSVLFLTPT-EMKMLEKLREA 141 (454)
Q Consensus 120 --~G~ail~l~p~-E~~~l~~L~~~ 141 (454)
.|.|++|+.+. +...+..+...
T Consensus 487 d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 487 DDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp CSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHhC
Confidence 59999999876 55677777544
No 54
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.74 E-value=1e-18 Score=194.31 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhc---------CCCCceEeecCCCCHHHHHHHHHHHh-----c-CCc
Q 012877 10 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL---------RPGIPLMCLYGRMKQDRRMAIYAQFC-----E-KRS 74 (454)
Q Consensus 10 ~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l---------~~gi~v~~LHG~msq~~R~~il~~F~-----~-~~~ 74 (454)
..+..++....++++||||+++..++.++..|... .+++.+..+||+|++.+|..+++.|. . ...
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 34455555556889999999999999999999751 25788999999999999999999999 7 889
Q ss_pred EEEeccccccccccCCCccEEEecCC------------------CCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 75 VLFCTDVASRGLDFNKAVDWVVQVDC------------------PEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 75 VLVaTDvaaRGLD~~p~Vd~VIq~D~------------------P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|||||+++++|||| |+|++||++++ |.+..+|+||+|||||. ..|.|+.|+++.+.
T Consensus 372 VlVAT~iae~GidI-p~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTI-DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCC-TTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCc-CCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999 99999999888 99999999999999999 89999999987654
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.74 E-value=3.5e-17 Score=179.24 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCC----------------------------------CceE
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPG----------------------------------IPLM 51 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~g----------------------------------i~v~ 51 (454)
..++..+..++. .++++||||+|++.++.++..|....+. ..+.
T Consensus 239 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 239 DAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp SHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred hHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 345555555553 4689999999999999999999875322 2488
Q ss_pred eecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----cC-------CCCChhHHHHHHhccccCC-
Q 012877 52 CLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VD-------CPEDVASYIHRVGRTARYN- 118 (454)
Q Consensus 52 ~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D-------~P~~~~~YIhRvGRtgR~g- 118 (454)
.+||+|++.+|..+++.|.+ ...|||||+++++|||+ |++++||+ || .|.+..+|+||+|||||.|
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidi-p~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~ 395 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNL-PARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGF 395 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCC-CBSEEEECCC--------------CHHHHHHHHTTBCCTTT
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCC-CceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 99999999999999999999 99999999999999999 99999999 99 8999999999999999988
Q ss_pred -CCceEEEEeCcchH
Q 012877 119 -SGGRSVLFLTPTEM 132 (454)
Q Consensus 119 -~~G~ail~l~p~E~ 132 (454)
..|.|++++++.+.
T Consensus 396 ~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 396 DQIGESIVVVRDKED 410 (715)
T ss_dssp CSCEEEEEECSCGGG
T ss_pred CCCceEEEEeCCchH
Confidence 58999999988763
No 56
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.73 E-value=1.1e-18 Score=190.73 Aligned_cols=100 Identities=27% Similarity=0.357 Sum_probs=91.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEE--
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVV-- 96 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VI-- 96 (454)
.+.++||||+|++.++.+++.|+.. ++.+..+||+|++.+ |.+ ...||||||+++||||+ | |++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDI-d-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTG-D-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCC-C-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCC-C-CcEEEec
Confidence 5679999999999999999999986 899999999999864 455 67999999999999999 7 99999
Q ss_pred --------ecC-----------CCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 97 --------QVD-----------CPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 97 --------q~D-----------~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
||| +|.+.++|+||+||||| |+.|. ++|+++.+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 677 99999999999999999 99999 999998775
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.72 E-value=1.9e-17 Score=191.15 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=105.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEec
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
.+.++||||+++..++.+++.|+...|++.+..+||+|++.+|..++.+|.+ +..|||||+++++|||+ |++++||++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi-p~v~~VIi~ 889 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI-PTANTIIIE 889 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC-TTEEEEEET
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc-cCCcEEEEe
Confidence 4689999999999999999999999899999999999999999999999999 99999999999999999 999999999
Q ss_pred CC-CCChhHHHHHHhccccCCCCceEEEEeCcch
Q 012877 99 DC-PEDVASYIHRVGRTARYNSGGRSVLFLTPTE 131 (454)
Q Consensus 99 D~-P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E 131 (454)
+. ++++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 98 5799999999999999999999999987753
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.72 E-value=2.2e-18 Score=191.78 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHhc--CCCcEEEEeCCh--------HHHHHHHHHHHh-cCCCCceEeecCCCCHHHHHHHHHHHhc-CCc
Q 012877 7 QKLDMLWSFIKAH--LNSKILVFLTSC--------KQVKYVFEAFKK-LRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRS 74 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~--~~~KiIVF~sS~--------k~v~~l~~~L~~-l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~ 74 (454)
.+...++.++... .+.+++|||+++ ..+..+++.|.. .+|++.+..+||+|++.+|..+++.|++ ...
T Consensus 562 ~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ 641 (780)
T 1gm5_A 562 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 641 (780)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 3456667777653 367899999965 457888899988 7789999999999999999999999999 999
Q ss_pred EEEeccccccccccCCCccEEEecCCCC-ChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 75 VLFCTDVASRGLDFNKAVDWVVQVDCPE-DVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 75 VLVaTDvaaRGLD~~p~Vd~VIq~D~P~-~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
|||||+++++|||+ |+|++||++|+|. +...|+||+||+||.|..|.|++++.|...
T Consensus 642 ILVaT~vie~GIDi-P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 642 ILVSTTVIEVGIDV-PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp BCCCSSCCCSCSCC-TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred EEEECCCCCccccC-CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 99999999999999 9999999999996 788999999999999999999999986443
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.71 E-value=4.9e-17 Score=169.97 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-C-Cc-EEEec
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-K-RS-VLFCT 79 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~-~~-VLVaT 79 (454)
...|+..|..+|... .+.++||||+++..++.+...|... .|+.+..+||++++.+|..++++|++ . .. +|+||
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE-LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHH-HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHh-hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 457899999998764 5789999999999999999999873 27899999999999999999999998 3 43 89999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceE--EEEeCcc--hHHHHHHHHH
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS--VLFLTPT--EMKMLEKLRE 140 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a--il~l~p~--E~~~l~~L~~ 140 (454)
+++++|||+ |.+++||+||+|+++..|+||+||++|.|+.+.+ +.|++.. |..++..+..
T Consensus 402 ~~~~~Glnl-~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 402 KAGGFGINL-TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp CCC-CCCCC-TTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred ccccCCCch-hhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999987765 4445544 3345554443
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.71 E-value=1.3e-17 Score=174.76 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec-c
Q 012877 6 EQKLDMLWSFIKAH---LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-D 80 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~---~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT-D 80 (454)
..+...+..++... .+.++||||+ ...+..+++.|... +..+..+||+|++.+|..+++.|++ ...||||| +
T Consensus 330 ~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~--~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 330 SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE--YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG 406 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT--CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc--CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC
Confidence 35666777777654 4556777776 88888899999986 5699999999999999999999999 89999999 9
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEEEEeC
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLT 128 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~ 128 (454)
++++|||+ |+|++||++++|+++..|+||+||+||.|..|.+++++.
T Consensus 407 ~~~~GiDi-p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 407 VFSTGISV-KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHSCCC-CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hhhccccc-ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999 999999999999999999999999999999885555554
No 61
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.71 E-value=7.1e-17 Score=176.75 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC----------------------------CCceEeecCCCCH
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP----------------------------GIPLMCLYGRMKQ 59 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~----------------------------gi~v~~LHG~msq 59 (454)
+...+...+. .++++||||+|++.++.++..|....+ +..+..+||+|++
T Consensus 231 ~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 231 FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 5566666664 467899999999999999998875311 1357889999999
Q ss_pred HHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----cC---CCCChhHHHHHHhccccCC--CCceEEEEeCc
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VD---CPEDVASYIHRVGRTARYN--SGGRSVLFLTP 129 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D---~P~~~~~YIhRvGRtgR~g--~~G~ail~l~p 129 (454)
.+|..+++.|++ ...|||||+++++|||+ |++++||+ || .|.+..+|+||+|||||.| ..|.|++++++
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi-p~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNL-PARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCC-CBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCC-CceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999 99999999999999999 99999999 77 7999999999999999998 58999999998
Q ss_pred chH
Q 012877 130 TEM 132 (454)
Q Consensus 130 ~E~ 132 (454)
.+.
T Consensus 388 ~~~ 390 (702)
T 2p6r_A 388 RDR 390 (702)
T ss_dssp GGH
T ss_pred ccH
Confidence 874
No 62
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.71 E-value=6.3e-17 Score=177.66 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCC----------------C---------------CceEeecC
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRP----------------G---------------IPLMCLYG 55 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~----------------g---------------i~v~~LHG 55 (454)
.++..+...+. .+.++||||+|++.++.++..|..... + ..+..+||
T Consensus 225 ~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 225 SWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp STTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 45566666664 458999999999999999998875311 1 24889999
Q ss_pred CCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----cC----CCCChhHHHHHHhccccCC--CCceEE
Q 012877 56 RMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VD----CPEDVASYIHRVGRTARYN--SGGRSV 124 (454)
Q Consensus 56 ~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D----~P~~~~~YIhRvGRtgR~g--~~G~ai 124 (454)
+|++.+|..+++.|++ ...|||||+++++|||+ |++++||+ || .|.++.+|+||+|||||.| ..|.|+
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi-p~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINT-PAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC-CBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC-CceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999 99999999999999999 99999999 87 6999999999999999998 589999
Q ss_pred EEeCcchH
Q 012877 125 LFLTPTEM 132 (454)
Q Consensus 125 l~l~p~E~ 132 (454)
+++++.+.
T Consensus 382 ~l~~~~~~ 389 (720)
T 2zj8_A 382 IVSTSDDP 389 (720)
T ss_dssp EECSSSCH
T ss_pred EEecCccH
Confidence 99998874
No 63
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.70 E-value=6.7e-17 Score=184.23 Aligned_cols=134 Identities=16% Similarity=0.256 Sum_probs=112.8
Q ss_pred CcchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCC-----------------------------------
Q 012877 4 PLEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI----------------------------------- 48 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi----------------------------------- 48 (454)
+...++..|+.+|..+...++||||+|++.|+.++..|..+ ++
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 396 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGI--NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRS 396 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTC--CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 45667888999999888899999999999999999998764 33
Q ss_pred ----ceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCC---------ChhHHHHHHhcc
Q 012877 49 ----PLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPE---------DVASYIHRVGRT 114 (454)
Q Consensus 49 ----~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~---------~~~~YIhRvGRt 114 (454)
.+..+||+|++..|..++..|.. ...|||||+++++|||+ |++. ||.+++|. ++..|+||+|||
T Consensus 397 ~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDi-P~~~-VVi~~~~k~dg~~~~~~s~~~y~Qr~GRA 474 (997)
T 4a4z_A 397 LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNL-PTRT-VIFSSIRKHDGNGLRELTPGEFTQMAGRA 474 (997)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCC-CCSE-EEESCSEEEETTEEEECCHHHHHHHHGGG
T ss_pred HhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCC-CCce-EEEeccccccCccCCCCCHHHHhHHhccc
Confidence 47899999999999999999999 99999999999999999 8855 55545544 999999999999
Q ss_pred ccCC--CCceEEEEe--CcchHHHHHHHHHc
Q 012877 115 ARYN--SGGRSVLFL--TPTEMKMLEKLREA 141 (454)
Q Consensus 115 gR~g--~~G~ail~l--~p~E~~~l~~L~~~ 141 (454)
||.| ..|.+++++ .+.+..+++.+...
T Consensus 475 GR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 475 GRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp CCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred ccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 9998 578888887 34456677766443
No 64
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.69 E-value=1.5e-16 Score=174.62 Aligned_cols=115 Identities=17% Similarity=0.320 Sum_probs=100.5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEeccccccccccCCCccEEEec
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVASRGLDFNKAVDWVVQV 98 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTDvaaRGLD~~p~Vd~VIq~ 98 (454)
...||||+|++.++.++..|... ++.+..+||+|++.+|..++..|+. ...|||||+++++|||+ + |++||++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~-v~~VI~~ 396 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-S-IRRIIFY 396 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-C-BSEEEES
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-C-ccEEEEC
Confidence 45689999999999999999986 8999999999999999999999996 47999999999999999 4 9999999
Q ss_pred CC--------------CCChhHHHHHHhccccCCCC---ceEEEEeCcchHHHHHHHHHc
Q 012877 99 DC--------------PEDVASYIHRVGRTARYNSG---GRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 99 D~--------------P~~~~~YIhRvGRtgR~g~~---G~ail~l~p~E~~~l~~L~~~ 141 (454)
++ |.+..+|+||+|||||.|.. |.|+ ++.+.+...++.+...
T Consensus 397 ~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~-~l~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 397 SLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVT-TMNHEDLSLLKEILKR 455 (677)
T ss_dssp CSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEE-ESSTTHHHHHHHHHHS
T ss_pred CccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEE-EEecchHHHHHHHHhc
Confidence 99 88999999999999999965 5444 4455566666666665
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=4.3e-16 Score=169.69 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHh---cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CC---cEEEe
Q 012877 6 EQKLDMLWSFIKA---HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFC 78 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~---~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~---~VLVa 78 (454)
..|+..|..++.. ..+.++||||++...++.+...|... |+.+..+||++++.+|..++++|++ .. .+|+|
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s 475 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLS 475 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC--CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 4577777666654 45789999999999999999999887 9999999999999999999999998 54 48999
Q ss_pred ccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceEE--EEeCcc--hHHHHHHHHH
Q 012877 79 TDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRSV--LFLTPT--EMKMLEKLRE 140 (454)
Q Consensus 79 TDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~ai--l~l~p~--E~~~l~~L~~ 140 (454)
|+++++|||+ +++++||+||+||++..|+|++||++|.|+...+. .|++.. |..++..+..
T Consensus 476 t~a~g~Glnl-~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~ 540 (644)
T 1z3i_X 476 SKAGGCGLNL-IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 540 (644)
T ss_dssp GGGSCTTCCC-TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred cccccCCccc-ccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999876544 455544 3345544433
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.65 E-value=2.2e-16 Score=169.03 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=90.5
Q ss_pred HHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHhcCC------CCceEeecCCCCHHHHHHHHHHHhc-CCc---EEEecc
Q 012877 12 LWSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLRP------GIPLMCLYGRMKQDRRMAIYAQFCE-KRS---VLFCTD 80 (454)
Q Consensus 12 L~~~Lk~-~~~~KiIVF~sS~k~v~~l~~~L~~l~~------gi~v~~LHG~msq~~R~~il~~F~~-~~~---VLVaTD 80 (454)
|..++.. ....++||||+|+.+++.++..|....+ +-.+..+||.+++ .|..++++|++ ... |||||+
T Consensus 429 l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 429 LTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQ 507 (590)
T ss_dssp HHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESS
T ss_pred HHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECC
Confidence 3444444 3457999999999999999999988632 1237789999875 79999999999 655 899999
Q ss_pred ccccccccCCCccEEEecCCCCChhHHHHHHhccccCCC
Q 012877 81 VASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 119 (454)
Q Consensus 81 vaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~ 119 (454)
++++|||+ |+|++||++++|+++..|+||+||+||.+.
T Consensus 508 ~l~~GiDi-p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 508 LLTTGVDA-PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTTTTCCC-TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hhhcCccc-hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999 999999999999999999999999999874
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-15 Score=169.15 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CC---cEEEec
Q 012877 6 EQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KR---SVLFCT 79 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~---~VLVaT 79 (454)
..|+..|..+|... .+.++||||.....++.+...|... |+++..+||++++.+|..++++|+. .. .+|+||
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 56899999999875 4679999999999999999999886 9999999999999999999999998 44 499999
Q ss_pred cccccccccCCCccEEEecCCCCChhHHHHHHhccccCCCCceE--EEEeCcc--hHHHHHHHHHc
Q 012877 80 DVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNSGGRS--VLFLTPT--EMKMLEKLREA 141 (454)
Q Consensus 80 DvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~~G~a--il~l~p~--E~~~l~~L~~~ 141 (454)
.+++.|||+ +.+++||+||+||++..++||+||+.|.|+...+ +.|++.. |..+++.+..+
T Consensus 633 ~agg~GlNL-~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 633 RAGGLGINL-MTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp HHHTTTCCC-TTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred ccccCCCCc-cccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999986554 4455554 55677666554
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.55 E-value=1.6e-14 Score=172.11 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=110.0
Q ss_pred HHHHHh-cCCCcEEEEeCChHHHHHHHHHHHhcC--------------------------------CCCceEeecCCCCH
Q 012877 13 WSFIKA-HLNSKILVFLTSCKQVKYVFEAFKKLR--------------------------------PGIPLMCLYGRMKQ 59 (454)
Q Consensus 13 ~~~Lk~-~~~~KiIVF~sS~k~v~~l~~~L~~l~--------------------------------~gi~v~~LHG~msq 59 (454)
+..+.. ..+.++||||+|++.|+.++..|.... -...+..+||+|++
T Consensus 1146 ~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~ 1225 (1724)
T 4f92_B 1146 YHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSP 1225 (1724)
T ss_dssp HHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCH
T ss_pred HHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCH
Confidence 344444 357789999999999988876664320 02347889999999
Q ss_pred HHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEe----------cCCCCChhHHHHHHhccccCCC--CceEEEE
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----------VDCPEDVASYIHRVGRTARYNS--GGRSVLF 126 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----------~D~P~~~~~YIhRvGRtgR~g~--~G~ail~ 126 (454)
.+|..+.+.|++ ...|||||+.+++|||+ |++.+||. ...|-++.+|+||+|||||.|. .|.|++|
T Consensus 1226 ~~R~~VE~lF~~G~i~VLvaT~tlA~GVnl-Pa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1226 MERRLVEQLFSSGAIQVVVASRSLCWGMNV-AAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHHHHHHHHTSBCEEEEEGGGSSSCCC-CBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEChHHHcCCCC-CccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 999999999999 99999999999999999 99999993 3346789999999999999986 7999999
Q ss_pred eCcchHHHHHHHHHcCCCcc
Q 012877 127 LTPTEMKMLEKLREAKIPIH 146 (454)
Q Consensus 127 l~p~E~~~l~~L~~~~i~i~ 146 (454)
+.+.+..+++.+.....|++
T Consensus 1305 ~~~~~~~~~~~ll~~~~pve 1324 (1724)
T 4f92_B 1305 CQGSKKDFFKKFLYEPLPVE 1324 (1724)
T ss_dssp EEGGGHHHHHHHTTSCBCCC
T ss_pred ecchHHHHHHHHhCCCCcee
Confidence 99999988888766666654
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.47 E-value=5.5e-14 Score=167.66 Aligned_cols=125 Identities=18% Similarity=0.289 Sum_probs=103.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC-----------------------------------CCCceEeecCCCCHHHHHHH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR-----------------------------------PGIPLMCLYGRMKQDRRMAI 65 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~-----------------------------------~gi~v~~LHG~msq~~R~~i 65 (454)
++++||||+|++.|+.++..|.... -...+.++||+|++.+|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 5689999999998888777765420 01247889999999999999
Q ss_pred HHHHhc-CCcEEEeccccccccccCCCccEEEe----cC------CCCChhHHHHHHhccccCC--CCceEEEEeCcchH
Q 012877 66 YAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQ----VD------CPEDVASYIHRVGRTARYN--SGGRSVLFLTPTEM 132 (454)
Q Consensus 66 l~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq----~D------~P~~~~~YIhRvGRtgR~g--~~G~ail~l~p~E~ 132 (454)
...|++ ...|||||+.+++|||+ |++++||. |+ .|-++.+|+||+|||||.| ..|.+++++.+.+.
T Consensus 397 E~~F~~G~i~vlvaTsTLa~GVNl-Pa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 397 EDLFADKHIQVLVSTATLAWGVNL-PAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp HHHHHTTCCCEEEECHHHHHHSCC-CBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred HHHHHCCCCeEEEEcchhHhhCCC-CCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 999999 99999999999999999 99999996 54 3568999999999999987 57999999999887
Q ss_pred HHHHHHHHcCCCcc
Q 012877 133 KMLEKLREAKIPIH 146 (454)
Q Consensus 133 ~~l~~L~~~~i~i~ 146 (454)
.+...|.....|++
T Consensus 476 ~~~~~ll~~~~pie 489 (1724)
T 4f92_B 476 QYYLSLLNQQLPIE 489 (1724)
T ss_dssp CHHHHHTTTCSCCC
T ss_pred HHHHHHHcCCCcch
Confidence 55555544445544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.23 E-value=4.6e-11 Score=136.62 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=94.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC----------CCCce-EeecCC----------C----------CHH---------
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR----------PGIPL-MCLYGR----------M----------KQD--------- 60 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~----------~gi~v-~~LHG~----------m----------sq~--------- 60 (454)
+.++||||+|+..|..++..|.... +++.+ .++||. + ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4589999999999999999998863 12454 456652 2 322
Q ss_pred --------------------HHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecCCCCChhHHHHHHhccccCCC
Q 012877 61 --------------------RRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYNS 119 (454)
Q Consensus 61 --------------------~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtgR~g~ 119 (454)
.|..++.+|++ ...|||+||++.+|+|+ |.+ .||++|.|.+...|+||+|||+|.+.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDi-P~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDA-PTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCC-TTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCc-ccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 48889999999 99999999999999999 999 78999999999999999999999976
Q ss_pred C----ceEEEEeCcchHHHHHHHHHc
Q 012877 120 G----GRSVLFLTPTEMKMLEKLREA 141 (454)
Q Consensus 120 ~----G~ail~l~p~E~~~l~~L~~~ 141 (454)
. |.++.|+.. ...+...|...
T Consensus 695 ~~K~~G~IVdf~~~-~~~l~~Al~~y 719 (1038)
T 2w00_A 695 ATKTFGNIVTFRDL-ERSTIDAITLF 719 (1038)
T ss_dssp TTCCSEEEEESSCC-HHHHHHHHHHT
T ss_pred CCCCcEEEEEcccc-HHHHHHHHHHH
Confidence 4 777776654 34566666655
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.27 E-value=1.6e-06 Score=92.34 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEE--ecccccccccc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLF--CTDVASRGLDF 88 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLV--aTDvaaRGLD~ 88 (454)
.|..++.. .++.+||||+|...++.+++.|.. .+ ...+|.. ..|..+++.|+....||| +|+.+++||||
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~----~~-~~~q~~~--~~~~~~l~~f~~~~~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG----IP-VIEENKK--TRHEEVLELMKTGKYLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT----SC-EEESTTT--CCHHHHHHHHHTSCCEEEEEC----------
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc----Cc-eEecCCC--CcHHHHHHHHhcCCeEEEEEecCceecceec
Confidence 34455543 456899999999999999887753 34 4556664 468889999988547887 89999999999
Q ss_pred CCC----ccEEEecCCCC
Q 012877 89 NKA----VDWVVQVDCPE 102 (454)
Q Consensus 89 ~p~----Vd~VIq~D~P~ 102 (454)
|+ +.+||.+++|.
T Consensus 447 -~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 447 -REKENLFESLVLAGLPY 463 (540)
T ss_dssp ------CEEEEEEESCCC
T ss_pred -CCCcccccEEEEECCCC
Confidence 65 89999999995
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.20 E-value=7.9e-06 Score=91.63 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=98.9
Q ss_pred CcchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHh--------------------------------------
Q 012877 4 PLEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKK-------------------------------------- 43 (454)
Q Consensus 4 ~~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~-------------------------------------- 43 (454)
....|+..+..-+... .+.++||+|.|....+.|+..|..
T Consensus 424 t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (997)
T 2ipc_A 424 TEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPA 503 (997)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSST
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccc
Confidence 3467888887766543 478999999999999999999981
Q ss_pred ------------------------------------cCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccccccc
Q 012877 44 ------------------------------------LRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVASRGLD 87 (454)
Q Consensus 44 ------------------------------------l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaaRGLD 87 (454)
+..||+.-+|.++....+ .+|+.+-.....|-|||+.|+||.|
T Consensus 504 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~E-AeIIAqAG~~GaVTIATNMAGRGTD 582 (997)
T 2ipc_A 504 QLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE-AEIVAQAGRSKTVTIATNMAGRGTD 582 (997)
T ss_dssp TCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHH-HHHHHTTTSTTCEEEECSSTTTTSC
T ss_pred cccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHH-HHHHHhcCCCCeEEEEecccCCCcC
Confidence 012677777777754222 3444444447889999999999999
Q ss_pred cCCCc------------------c-------------------------------------------------------E
Q 012877 88 FNKAV------------------D-------------------------------------------------------W 94 (454)
Q Consensus 88 ~~p~V------------------d-------------------------------------------------------~ 94 (454)
|.-+= + +
T Consensus 583 IkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLh 662 (997)
T 2ipc_A 583 IKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLF 662 (997)
T ss_dssp CCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred eecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeE
Confidence 94330 1 8
Q ss_pred EEecCCCCChhHHHHHHhccccCCCCceEEEEeCcchH
Q 012877 95 VVQVDCPEDVASYIHRVGRTARYNSGGRSVLFLTPTEM 132 (454)
Q Consensus 95 VIq~D~P~~~~~YIhRvGRtgR~g~~G~ail~l~p~E~ 132 (454)
||....+.|...=.|-.||+||-|.+|.+.+|++-.+.
T Consensus 663 VIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 663 IIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp EEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 99999999999999999999999999999998876653
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.22 E-value=0.001 Score=66.92 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=82.9
Q ss_pred cchHHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 5 LEQKLDMLWSFIKAH--LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~--~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
...|+.+|-.+|... .+.+++||+...+..+.+-..|... |+....+.|...... ... .+ ...|.+.|..
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~--~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN--KVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS--SCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC--CCceEeCCCCchhhh-hhc----ccCCceEEEEECC
Confidence 356888888888653 4679999999999999999888764 889999999855432 111 13 4445455666
Q ss_pred cccccc-----cCCCccEEEecCCCCChhHH-HHHHhccccCC----CCceEEEEeCcchH
Q 012877 82 ASRGLD-----FNKAVDWVVQVDCPEDVASY-IHRVGRTARYN----SGGRSVLFLTPTEM 132 (454)
Q Consensus 82 aaRGLD-----~~p~Vd~VIq~D~P~~~~~Y-IhRvGRtgR~g----~~G~ail~l~p~E~ 132 (454)
.+-|++ + ...|.||-||.-|++..= +|.+-|+.|.| +.-.++-+++....
T Consensus 180 g~~gin~~~~nl-~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 180 GINFTKYPIKSK-ARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CCCTTTSCCCCC-SCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCCCcCcccccC-CCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 666776 5 689999999999999884 89888888873 23345656655433
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.93 E-value=0.0026 Score=68.91 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc--cccccccc
Q 012877 11 MLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD--VASRGLDF 88 (454)
Q Consensus 11 ~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD--vaaRGLD~ 88 (454)
.|..++... ++.++|||+|....+.+++.|.. +... ..-+++...|..++++|+....|||+|. .+.+||||
T Consensus 439 ~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~----~~~~-~~q~~~~~~~~~ll~~f~~~~~vL~~v~~gsf~EGiD~ 512 (620)
T 4a15_A 439 VIEDIILKV-KKNTIVYFPSYSLMDRVENRVSF----EHMK-EYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINF 512 (620)
T ss_dssp HHHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS----CCEE-CCTTCCSHHHHHHHHHHTTSCCEEEEETTSCC------
T ss_pred HHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh----cchh-ccCCCChhHHHHHHHHhccCCcEEEEEecCceeccccC
Confidence 344555444 45699999999999888887762 1222 4455666689999999997668999975 99999999
Q ss_pred CCC--ccEEEecCCCCCh-------------------h--HH--------HHHHhccccCCCCceEEEEeC
Q 012877 89 NKA--VDWVVQVDCPEDV-------------------A--SY--------IHRVGRTARYNSGGRSVLFLT 128 (454)
Q Consensus 89 ~p~--Vd~VIq~D~P~~~-------------------~--~Y--------IhRvGRtgR~g~~G~ail~l~ 128 (454)
|+ ..+||...+|... - .| .|-+||.=|....--+++++.
T Consensus 513 -~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 513 -PGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp ---CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred -CCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 64 7799999888521 1 12 588899988765433444443
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.46 E-value=0.028 Score=59.67 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec--ccccccccc
Q 012877 12 LWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT--DVASRGLDF 88 (454)
Q Consensus 12 L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT--DvaaRGLD~ 88 (454)
|..++.. .++.++|||+|....+.+++. .+.+++.-.-+++. ..+++.|+. ...||+|| ..+.+||||
T Consensus 385 i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~-----~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~ 455 (551)
T 3crv_A 385 LLKIYFQ-AKANVLVVFPSYEIMDRVMSR-----ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIEL 455 (551)
T ss_dssp HHHHHHH-CSSEEEEEESCHHHHHHHHTT-----CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCC
T ss_pred HHHHHHh-CCCCEEEEecCHHHHHHHHHh-----cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccc
Confidence 3344433 356899999999998888862 25566554345553 557778866 66899998 699999999
Q ss_pred CC-----CccEEEecCCCC
Q 012877 89 NK-----AVDWVVQVDCPE 102 (454)
Q Consensus 89 ~p-----~Vd~VIq~D~P~ 102 (454)
| .+.+||...+|.
T Consensus 456 -~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 456 -RNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp -EETTEESEEEEEEESCCC
T ss_pred -cccCCcceeEEEEEcCCC
Confidence 7 588999988775
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.48 E-value=0.096 Score=58.32 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=67.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-cccccccCCCccEEE
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRGLDFNKAVDWVV 96 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-aaRGLD~~p~Vd~VI 96 (454)
+.+++|.++|...+..++..|..+.+ |+.+..+||+++...|..++..+.. ...|+|+|.. +...+.+ .++.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~-~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHF-KNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCC-SCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhc-cCCceEE
Confidence 57899999999999999998887654 7899999999999999999999998 8999999964 4456788 8899988
Q ss_pred ecCC
Q 012877 97 QVDC 100 (454)
Q Consensus 97 q~D~ 100 (454)
-=.+
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 6443
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.61 E-value=0.27 Score=49.25 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=65.8
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc----cccccCCCc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS----RGLDFNKAV 92 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa----RGLD~~p~V 92 (454)
..+.++||.++|+..+..++..|..+.+ ++.+..+||+.+..++...+..+.. ...|+|+|.-.- .-+.+ ..+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ-KRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT-CCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc-ccc
Confidence 3567899999999999999999998654 8899999999999888888888888 799999996422 12555 678
Q ss_pred cEEEecCC
Q 012877 93 DWVVQVDC 100 (454)
Q Consensus 93 d~VIq~D~ 100 (454)
++||-=.+
T Consensus 141 ~~iViDEa 148 (414)
T 3oiy_A 141 DFVFVDDV 148 (414)
T ss_dssp SEEEESCH
T ss_pred cEEEEeCh
Confidence 88886444
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.79 E-value=0.78 Score=40.84 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cc-cccccCCCcc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----AS-RGLDFNKAVD 93 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aa-RGLD~~p~Vd 93 (454)
.+.++||.|+|+..+..+++.+....+++.+..+||+.+....... +.....|+|+|.- +. ..+++ ..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~-~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEA---LLRGADAVVATPGRALDYLRQGVLDL-SRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHH---HHHCCSEEEECHHHHHHHHHHTSSCC-TTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHH---hhCCCCEEEECHHHHHHHHHcCCcch-hhce
Confidence 3568999999999999999999998777889999999875443322 2236789999952 22 24566 6777
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 79
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.25 E-value=0.56 Score=54.30 Aligned_cols=78 Identities=13% Similarity=0.234 Sum_probs=66.7
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec-cccccccccCCCccE
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-DVASRGLDFNKAVDW 94 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT-DvaaRGLD~~p~Vd~ 94 (454)
..+.+++|.|+|...+..+++.|...++ ++.+..+||..+...+..++..+.. ...|+|+| ..+...+.+ .++++
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~-~~l~l 728 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF-KDLGL 728 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCC-SSEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccc-cccce
Confidence 4567999999999999999999987655 4678899999999999999999988 89999999 556666888 88988
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
||-
T Consensus 729 vIi 731 (1151)
T 2eyq_A 729 LIV 731 (1151)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 80
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.97 E-value=0.65 Score=43.58 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=53.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cc--cccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----AS--RGLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aa--RGLD~~p 90 (454)
.+.++||.++|+..+..+++.|+.+.. ++.+..++|+.+...+... ......|+|+|.- +. .++++ .
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~Tp~~l~~~l~~~~~~~l-~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LAKKPHIIIATPGRLIDHLENTKGFNL-R 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HHTCCSEEEECHHHHHHHHHHSTTCCC-T
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hcCCCCEEEECHHHHHHHHHcCCCcCc-c
Confidence 356799999999999988888876532 6889999999886544322 2337799999953 21 35677 7
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7887775
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.64 E-value=0.49 Score=43.52 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=53.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC---CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc------ccccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~---~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva------aRGLD~~p 90 (454)
.+.++||.|+|+..+..+++.+..+. +++.+..++|+.+...+...+ ....|+|+|.-. ...+++ .
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~~-~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----KKCHIAVGSPGRIKQLIELDYLNP-G 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----TSCSEEEECHHHHHHHHHTTSSCG-G
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----cCCCEEEECHHHHHHHHhcCCccc-c
Confidence 35689999999999999999888763 378899999998876543322 267899999632 234566 6
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777765
No 82
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.48 E-value=0.48 Score=54.69 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=65.5
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc-c---ccccCCCc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-R---GLDFNKAV 92 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa-R---GLD~~p~V 92 (454)
..+.++||.++|+..+..++..|..+. .++.+..+||+++..+|...+..+.. ...|+|+|.-.- + -+++ .++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~-~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ-KRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHT-SCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcc-cCc
Confidence 356789999999999999999999843 36799999999999888888899988 799999995321 1 1556 788
Q ss_pred cEEEecCC
Q 012877 93 DWVVQVDC 100 (454)
Q Consensus 93 d~VIq~D~ 100 (454)
++||-=.+
T Consensus 198 ~~lViDEa 205 (1104)
T 4ddu_A 198 DFVFVDDV 205 (1104)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCC
Confidence 88886444
No 83
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=90.92 E-value=0.79 Score=40.86 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=52.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC---CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----ccc-ccccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASR-GLDFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~---~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaR-GLD~~p~ 91 (454)
+.++||.++|+..+..+++.+..+. +++.+..++|+.+..... ..+.....|+|+|.- +.+ .+++ ..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~-~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKV-DH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCC-TT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcCCCCCEEEeCHHHHHHHHHcCCcCc-cc
Confidence 4579999999999999988887764 367889999998865432 222336789999962 223 3456 67
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.76 E-value=0.69 Score=41.89 Aligned_cols=72 Identities=11% Similarity=0.278 Sum_probs=54.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC---CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-----c-ccccccCCC
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-----A-SRGLDFNKA 91 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~---~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-----a-aRGLD~~p~ 91 (454)
.++||.|+|+..+..+++.+..+. +++.+..+||+.+...+.. .+.. ...|+|+|.- + ...+++ ..
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~-~~ 158 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNL-KH 158 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCC-TT
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCc-cc
Confidence 489999999999999888887763 4788999999998765543 3444 6799999953 1 234667 78
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888885
No 85
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=89.50 E-value=0.69 Score=42.77 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=47.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc-----ccccc-cccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASRG-LDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD-----vaaRG-LD~~p 90 (454)
.+.++||.++|+..+..++..|..+.. ++.+..++|+.+.... +..+.. ...|+|+|. .+.++ +++ .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~-~ 172 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSP-K 172 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCS-T
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCc-c
Confidence 356899999999999999999987643 5778888988754332 233444 578999993 33343 566 6
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 173 ~~~~lVi 179 (237)
T 3bor_A 173 WIKMFVL 179 (237)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 7787775
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.32 E-value=1.9 Score=39.78 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=53.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc-ccccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR-GLD~~p~V 92 (454)
+.++||.++|+..+..++..+..+. .++.+..++|+.+...+... +.....|+|+|. .+.+ .+++ ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~Tp~~l~~~l~~~~~~~-~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---LERGVEICIATPGRLIDFLECGKTNL-RRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHHTSCCC-TTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---hcCCCCEEEECHHHHHHHHHcCCCCc-ccc
Confidence 5679999999999988888777642 37889999999987655433 333678999995 3333 3567 778
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88775
No 87
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.72 E-value=1.8 Score=39.39 Aligned_cols=74 Identities=14% Similarity=0.333 Sum_probs=50.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC-CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc------cccccccCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR-PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV------ASRGLDFNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~-~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv------aaRGLD~~p~V 92 (454)
.+.++||.++|+..+..+++.+..+. .++.+..++|+.+...+. ..+.....|+|+|.- ....+++ ..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~-~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNL-RSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCC-TTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCc-ccc
Confidence 46689999999999999999998863 478899999987754432 233346789999952 2234567 778
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87775
No 88
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.71 E-value=1.9 Score=39.42 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----ccc--ccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASR--GLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaR--GLD~~p 90 (454)
.+.++||.++|+..+..+++.+..+.. ++.+..+||+.+.......+ ....|+|+|.- +.+ .+++ .
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~iiv~Tp~~l~~~l~~~~~~~~-~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----NNINILVCTPGRLLQHMDETVSFHA-T 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----TTCSEEEECHHHHHHHHHHCSSCCC-T
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----CCCCEEEECHHHHHHHHHhcCCccc-c
Confidence 356899999999999999999988743 47889999997654433222 26789999952 112 3555 6
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6776665
No 89
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.25 E-value=0.66 Score=42.04 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=46.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc------ccccccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA------SRGLDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva------aRGLD~~p~V 92 (454)
+.++||.++|+..+..+++.+..+.+ ++.+..+||+.+....... +. ...|+|+|.-. ...+++ ..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~-~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR-DAQIVVGTPGRVFDNIQRRRFRT-DKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT-TCSEEEECHHHHHHHHHTTSSCC-TTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC-CCCEEEECHHHHHHHHHhCCcch-hhC
Confidence 56899999999999999998887643 6788999998765443221 11 47899999532 234556 667
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77774
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=86.47 E-value=0.56 Score=45.54 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=50.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC---CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc-------cccccC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-------RGLDFN 89 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~---~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa-------RGLD~~ 89 (454)
..++||.++|+..+..++..+..+. +++.+..++|+.+...+. . ...|||||.-.- ..+++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l- 233 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDP- 233 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCG-
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCCh-
Confidence 3479999999999999888887763 467888888876532211 3 668999996421 35777
Q ss_pred CCccEEEec
Q 012877 90 KAVDWVVQV 98 (454)
Q Consensus 90 p~Vd~VIq~ 98 (454)
..+.+||-=
T Consensus 234 ~~l~~lVlD 242 (300)
T 3fmo_B 234 KKIKVFVLD 242 (300)
T ss_dssp GGCSEEEET
T ss_pred hhceEEEEe
Confidence 788888763
No 91
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=86.46 E-value=1.1 Score=45.99 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=50.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----ccc-c-ccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----SRG-L-DFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva-----aRG-L-D~~p~ 91 (454)
+.++||.|+|+..+...+..|..+.+ ++.+..+||+.+...+.. .+.....|+|||.-. .+| + .+ ..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~-~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSL-SI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHH---HHHHHCSEEEECHHHHHHHHHSSSCCCS-TT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHH---HhhCCCCEEEECHHHHHHHHHhCccccc-cc
Confidence 67899999999999988888887654 889999999986554322 222357899999542 223 3 56 77
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888876
No 92
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.24 E-value=3.2 Score=42.08 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=54.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cccc-cccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-LDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaRG-LD~~p~V 92 (454)
+.++||.++|+..+..+++.+.++. .++.+..+||+.+...+.. .+.....|+|+|.- +.+| +++ ..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~Ivv~Tp~~l~~~l~~~~~~l-~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITRGCHVVIATPGRLLDFVDRTFITF-EDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSCCC-TTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---HhhcCCCEEEEChHHHHHHHHhCCccc-ccC
Confidence 4589999999999999999988764 3578889999998755432 22337899999953 3333 567 788
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88885
No 93
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.02 E-value=4 Score=40.15 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=53.0
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----ccc-ccccCCCcc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASR-GLDFNKAVD 93 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaR-GLD~~p~Vd 93 (454)
.++||.++|+..+..+++.|..+. .++.+..+||+.+...... .+.....|+|+|.- +.+ .+++ ..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~-~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERGCHLLVATPGRLVDMMERGKIGL-DFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSBCC-TTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCCCCEEEEChHHHHHHHHcCCcCh-hhCc
Confidence 579999999999999999887653 3688999999988755432 33336789999963 222 3566 7788
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 94
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.90 E-value=2.7 Score=41.40 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=54.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-cc-----cccccCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-AS-----RGLDFNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-aa-----RGLD~~p~ 91 (454)
.+.++||.|++...+...+..|.+.. ++..+..+||+.....+...+ ....|+|+|.- +. ..+.+ ..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~ivv~T~~~l~~~~~~~~~~~-~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW----ARAKVIVATPQTIENDLLAGRISL-ED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH----HHCSEEEECHHHHHHHHHTTSCCT-TS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc----cCCCEEEecHHHHHHHHhcCCcch-hh
Confidence 57899999999999999999998875 344899999999887654332 25689999853 22 23566 67
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888875
No 95
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=85.61 E-value=5.5 Score=37.37 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=53.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccc--cccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VAS--RGLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaa--RGLD~~p 90 (454)
.+.++||.++|+..+..++..|+.+.. ++.+..++|+....... ..+.....|+|+|. .+. .++++ .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~-~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQNTPGFMY-K 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHCTTCCC-T
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHHccCCccc-c
Confidence 356799999999999999999988643 56788899998765443 22333688999994 222 24677 7
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+.+||-
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888775
No 96
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=85.19 E-value=0.6 Score=42.42 Aligned_cols=73 Identities=12% Similarity=0.234 Sum_probs=49.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC------CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc-cccc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP------GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDF 88 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~------gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR-GLD~ 88 (454)
+.++||.++|+..+..+++.+..+.. ++.+..++|+.+..... ..+.....|+|+|. .+.+ .+++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 148 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDV 148 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCc
Confidence 56899999999999999888877532 57888899997643221 11111567999994 2233 3556
Q ss_pred CCCccEEEe
Q 012877 89 NKAVDWVVQ 97 (454)
Q Consensus 89 ~p~Vd~VIq 97 (454)
..+++||-
T Consensus 149 -~~~~~lVi 156 (219)
T 1q0u_A 149 -HTAHILVV 156 (219)
T ss_dssp -GGCCEEEE
T ss_pred -CcceEEEE
Confidence 67777765
No 97
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.62 E-value=2.7 Score=41.17 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=53.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc-ccccCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR-GLD~~p~ 91 (454)
.+.++||.|+|+..+..+++.+..+.+ ++.+..++|+........ .+.....|+|+|. .+.+ .+.+ ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~-~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RLNETVHILVGTPGRVLDLASRKVADL-SD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCC-TT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---HhcCCCCEEEEchHHHHHHHHhCCccc-cc
Confidence 345899999999999999998887654 678899999987644321 2223778999994 2333 3567 77
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888876
No 98
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=84.31 E-value=3.1 Score=40.41 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=53.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----c-cccccCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----S-RGLDFNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva-----a-RGLD~~p~ 91 (454)
.+.++||.|+|+..+..+++.+..+.+ ++.+..+||+.+.......+. ...|+|+|.-. . ..+.+ ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~-~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----DAQIVVGTPGRVFDNIQRRRFRT-DK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH----HCSEEEECHHHHHHHHHTTSSCC-TT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC----CCCEEEECHHHHHHHHHhCCcch-hh
Confidence 356899999999999999988887643 678999999988765544333 56899999431 2 23455 67
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.78 E-value=2.9 Score=40.62 Aligned_cols=73 Identities=10% Similarity=0.264 Sum_probs=54.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC---CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc------ccccccCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNK 90 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~---~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva------aRGLD~~p 90 (454)
+.++||.|+|+..+..++..+..+. |++.+..++|+.+...... .+.. ...|+|+|.-. ...+++ .
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~-~ 151 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNL-K 151 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCC-T
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccc-c
Confidence 4589999999999998888887763 5789999999998765543 3344 67899999532 234567 7
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888885
No 100
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.74 E-value=3.4 Score=44.18 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=53.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHh--c-CCcEEEecc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC--E-KRSVLFCTD 80 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~--~-~~~VLVaTD 80 (454)
....+||.++++..+...+..|..+ |+.+..+||+++...+..++..+. . ...|||+|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3568999999999999999999988 999999999999999999988884 4 789999997
No 101
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.35 E-value=4.6 Score=37.30 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=51.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----c-cccccCCCcc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----S-RGLDFNKAVD 93 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva-----a-RGLD~~p~Vd 93 (454)
.++||.|+|+..+..+++.+..+. .++.+..++|+.+...... .+.....|+|+|.-. . ..+++ ..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~-~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQMGCHLLVATPGRLVDFIEKNKISL-EFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSSCCSEEEECHHHHHHHHHTTSBCC-TTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCCCCCEEEECHHHHHHHHHcCCCCh-hhCC
Confidence 589999999999999988887753 2577888999987654332 223367899999631 1 23566 6778
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 102
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=83.28 E-value=1.2 Score=45.54 Aligned_cols=73 Identities=11% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----ccc-c-ccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----SRG-L-DFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva-----aRG-L-D~~p~ 91 (454)
+.++||.|+|+..+...+..|..+.+ ++.+..+||+.+...+.. .+.....|+|||.-. ..| + .+ ..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~-~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQ---HIIEDNDIIILTPQILVNNLNNGAIPSL-SV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHH---HHHHHCSEEEECHHHHHHHHHTSSSCCG-GG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHH---HHhcCCCEEEECHHHHHHHHhcCccccc-cc
Confidence 67899999999999888888877644 789999999986544322 222357899998532 222 3 56 67
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888876
No 103
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=81.51 E-value=5 Score=38.33 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=52.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----c-cccccCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----S-RGLDFNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva-----a-RGLD~~p~ 91 (454)
.+.++||.++++..+..+++.|..+. .++.+..++|+.........+. ...|+|+|.-. . ..+++ ..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~iiv~T~~~l~~~~~~~~~~~-~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK----NANIVVGTPGRILDHINRGTLNL-KN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH----TCSEEEECHHHHHHHHHTTCSCT-TS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC----CCCEEEecHHHHHHHHHcCCccc-cc
Confidence 46789999999999999999888763 3678889999987654433221 67899999532 1 23556 77
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 104
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.45 E-value=4.7 Score=42.21 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc------cccccCCCcc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS------RGLDFNKAVD 93 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa------RGLD~~p~Vd 93 (454)
.+.+||.+++...+...+..|..+ |+.+..+||+.+...+..++..+.. ...||++|.-.- ..+.. ..+.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~-~~~~ 141 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAH-WNPV 141 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTT-SCEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhh-CCCC
Confidence 568999999999999999999987 8999999999999999999999988 899999985311 22344 4566
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 142 ~vVi 145 (523)
T 1oyw_A 142 LLAV 145 (523)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 105
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=81.29 E-value=2.4 Score=46.62 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cccc-c-ccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-L-DFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaRG-L-D~~p~ 91 (454)
+.++||.|+|...+...+..|....+ ++.+..+||+.+...+.. .+.....|+|||.- +.+| + .+ ..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~-~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSL-SI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHH---HHHHTCSEEEECHHHHHHHHHSSSCCCG-GG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHH---HhhCCCCEEEEchHHHHHHHHhcccccc-cc
Confidence 67899999999999998888887755 899999999986654422 22236789999943 2222 3 56 67
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888885
No 106
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.97 E-value=5.3 Score=39.25 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=54.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----cccc-ccccCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASR-GLDFNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaR-GLD~~p~ 91 (454)
.+.++||.++|+..+..+++.|..+. .++.+..++|+.+....... ......|+|+|. .+.+ .+.+ ..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~ivv~Tp~~l~~~l~~~~~~~-~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRT-RA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCC-TT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcCCCEEEcCHHHHHHHHHhCCccH-hh
Confidence 46789999999999999999888763 25778889999887554332 223678999994 3334 3566 77
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888875
No 107
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.84 E-value=3.5 Score=47.21 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=58.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--CC----ceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-cccccc-cCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP--GI----PLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-ASRGLD-FNKA 91 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~--gi----~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-aaRGLD-~~p~ 91 (454)
.+.++||.++|+..+..+++.|+.+.+ ++ .+..+||+.+...+...+..+.. ..|+|+|+- +..-+. + ..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L-~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYREL-GH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTS-CC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHh-cc
Confidence 467899999999999999999887643 45 78999999999888777777776 899999963 222222 5 56
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 778875
No 108
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=77.62 E-value=11 Score=35.53 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecccc-----cc-ccccCCCc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVA-----SR-GLDFNKAV 92 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDva-----aR-GLD~~p~V 92 (454)
+.++||.+++...+..+++.|..+. .++.+..+||+.+....... +. ...|+|+|.-. .+ .+++ ..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~-~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR-NADIVVATPGRLLDLWSKGVIDL-SSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT-TCSEEEECHHHHHHHHHTTSCCG-GGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC-CCCEEEECHHHHHHHHHcCCcch-hhC
Confidence 6789999999999999999998753 36789999999887554322 22 47899999532 22 3456 677
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77775
No 109
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.42 E-value=2.7 Score=37.22 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=36.5
Q ss_pred CCcEEEEeCChHHHHH-HHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 21 NSKILVFLTSCKQVKY-VFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~-l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
..++||.|++...+.. +.+.+..+.+ ++.+..++|+.....+.. .......|+|+|.-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHH---HHHHHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHH---hhccCCCEEEECHH
Confidence 6789999999988777 5566655422 578889999764332211 11125789999853
No 110
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=74.38 E-value=2.1 Score=39.42 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=49.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-----ccc---ccccC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-----ASR---GLDFN 89 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-----aaR---GLD~~ 89 (454)
+.++||.++|+..+..+++.+..+.. ++.+..+||+.....+ +..... ...|+|+|.- +.+ ++++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~- 173 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL- 173 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC-
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc-
Confidence 45799999999999999999988643 5677778776432211 111123 5689999942 222 4677
Q ss_pred CCccEEEe
Q 012877 90 KAVDWVVQ 97 (454)
Q Consensus 90 p~Vd~VIq 97 (454)
..+.+||-
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77887775
No 111
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=74.08 E-value=4.8 Score=41.23 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=53.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc--CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-cccc--cccCCCcc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKL--RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRG--LDFNKAVD 93 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l--~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-aaRG--LD~~p~Vd 93 (454)
...++||.|+|...+...++.|... .+++.+..+||+.+...+ .. ...|+|+|.- +.+. ..+ ..++
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~-~~~~ 227 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWF-SQFG 227 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGG-GGEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhh-hcCC
Confidence 3459999999999999999999876 455688999999876543 23 7889999953 2222 345 6778
Q ss_pred EEEecCC
Q 012877 94 WVVQVDC 100 (454)
Q Consensus 94 ~VIq~D~ 100 (454)
+||-=.+
T Consensus 228 liIiDE~ 234 (510)
T 2oca_A 228 MMMNDEC 234 (510)
T ss_dssp EEEEETG
T ss_pred EEEEECC
Confidence 8876443
No 112
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=72.41 E-value=3.5 Score=33.54 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
..++||||.+...+...+..|..+ |+.+..|.||+..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~--G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQL--GLNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTT--TCCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHc--CCCEEEEcCcHHH
Confidence 568999999999899999999887 8899999999764
No 113
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=72.05 E-value=4.9 Score=33.14 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=31.5
Q ss_pred CcEEEEe-CChHHHHHHHHHHHhcCCCCceEeecCCCCHH
Q 012877 22 SKILVFL-TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQD 60 (454)
Q Consensus 22 ~KiIVF~-sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~ 60 (454)
.++|||| .+...+...+..|..+ |+.+..|.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~--G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL--GVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT--TCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHc--CCceEEEeCcHHHH
Confidence 7899999 5877788888999887 88999999998754
No 114
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.47 E-value=11 Score=36.75 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=53.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecc-----cccc-ccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTD-----VASR-GLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTD-----vaaR-GLD~~p 90 (454)
.+.++||.++|+..+..+++.+..+. .++.+..++|+.+.... +..+.. ...|+|+|. .+.+ .+.+ .
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~-~ 182 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSP-K 182 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCS-T
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccc-c
Confidence 45789999999999999988887753 36778888888765433 445555 789999994 2333 3556 6
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+++||-
T Consensus 183 ~~~~vVi 189 (414)
T 3eiq_A 183 YIKMFVL 189 (414)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 7787775
No 115
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=71.44 E-value=4.3 Score=31.98 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=31.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
.++||||.+...+...+..|... |+.+..|.||+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~--G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE--GYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH--TCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHc--CCcEEEEcccHHH
Confidence 78999999998888899999987 8888889999753
No 116
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=71.19 E-value=7.2 Score=41.55 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=52.5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cccc-c-ccCCCc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-L-DFNKAV 92 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaRG-L-D~~p~V 92 (454)
.++||.++|+..+...+..|..+.+ ++.+..+||+.+...+.. .......|+|||.- +.+| + .+ ..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l-~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVE---QIVENNDIIILTPQILVNNLKKGTIPSL-SIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHH---HHHHTCSEEEECHHHHHHHHHTTSSCCG-GGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHH---HhccCCCEEEECHHHHHHHHhcCccccc-ccc
Confidence 7899999999999999999888765 789999999986433221 12236789999953 2233 3 56 678
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88886
No 117
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.04 E-value=1.5 Score=46.83 Aligned_cols=72 Identities=11% Similarity=0.240 Sum_probs=49.2
Q ss_pred CcEEEEeCChHHHHHH-HHHHHhcCCC-CceEeecCCCCHHHHHHHHHHHhcCCcEEEeccccc------------cccc
Q 012877 22 SKILVFLTSCKQVKYV-FEAFKKLRPG-IPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDVAS------------RGLD 87 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l-~~~L~~l~~g-i~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDvaa------------RGLD 87 (454)
.++||.+++...+... +..|....+. +.+..+||+.+...+.. .+.....|+|+|.-.- ..+.
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~ 133 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAGVQ 133 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHH---HHHHSCSEEEEEHHHHHHHTC--------CCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHH---hhhcCCCEEEECHHHHHHHHhcccccccccee
Confidence 7899999999999888 8888887654 89999999986544322 2224678999985322 1346
Q ss_pred cCCCccEEEe
Q 012877 88 FNKAVDWVVQ 97 (454)
Q Consensus 88 ~~p~Vd~VIq 97 (454)
+ ..+++||-
T Consensus 134 ~-~~~~lvVi 142 (699)
T 4gl2_A 134 L-SDFSLIII 142 (699)
T ss_dssp G-GGCSEEEE
T ss_pred c-ccCcEEEE
Confidence 6 67888875
No 118
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=67.82 E-value=5.2 Score=32.32 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+. +..|.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT--TCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc--CCcCEEEecCCHHH
Confidence 3568999999999999999999987 885 8899999754
No 119
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=67.55 E-value=17 Score=37.58 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=51.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc------CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc-----c--ccc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKL------RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-----R--GLD 87 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l------~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa-----R--GLD 87 (454)
.++||.++|+..+..++..|..+ .+++.+..++|+.+... .+..+.. ...|+|||.-.- + ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 47999999999999999888774 23566788888876543 4455656 889999996422 2 234
Q ss_pred cCCCccEEEe
Q 012877 88 FNKAVDWVVQ 97 (454)
Q Consensus 88 ~~p~Vd~VIq 97 (454)
+ ..+++||-
T Consensus 224 ~-~~~~~lVi 232 (563)
T 3i5x_A 224 F-RFVDYKVL 232 (563)
T ss_dssp C-TTCCEEEE
T ss_pred c-ccceEEEE
Confidence 6 67888775
No 120
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=67.46 E-value=3.7 Score=33.56 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 58 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~ms 58 (454)
..++||||.+.......+..|... |+.+..|.||+.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~--G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEAN--GIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTT--TCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHc--CCCEEEecChHH
Confidence 578999999998888999999987 999889999864
No 121
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=66.78 E-value=4.7 Score=32.14 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
..++||||.+...+...+..|... |+.+..|.||+..
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~--G~~v~~l~GG~~~ 92 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQN--GVNAVNVEGGMDE 92 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTT--TCEEEEETTHHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHC--CCCEEEecccHHH
Confidence 578999999998899999999887 8899999998653
No 122
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=66.00 E-value=10 Score=30.47 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=35.8
Q ss_pred HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHH
Q 012877 12 LWSFIKAH-LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQD 60 (454)
Q Consensus 12 L~~~Lk~~-~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~ 60 (454)
|...+... ...++||||.+...+...+..|... |+. +..|.||+..-
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQ--GYDVVYSIDGGFEAW 96 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHH--TCSSEEEETTHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHc--CCceEEEecCCHHHH
Confidence 33444443 3578999999988888999999987 884 88999997643
No 123
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=64.97 E-value=4.4 Score=32.40 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+.+..|.||+..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~--G~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN--GIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT--TCEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC--CCCeEEeCCCHHH
Confidence 3568999999988888899999887 8899999998653
No 124
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=64.61 E-value=20 Score=37.43 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=52.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC------CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc-----cc--ccc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLR------PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA-----SR--GLD 87 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~------~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva-----aR--GLD 87 (454)
.++||.++|+..+..++..|..+. +.+.+..++|+.... ..+..+.. ...|+|||.-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH---HHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 489999999999999888887642 356778888887653 34455656 78999999532 22 345
Q ss_pred cCCCccEEEe
Q 012877 88 FNKAVDWVVQ 97 (454)
Q Consensus 88 ~~p~Vd~VIq 97 (454)
+ ..+++||-
T Consensus 173 ~-~~~~~lVi 181 (579)
T 3sqw_A 173 F-RFVDYKVL 181 (579)
T ss_dssp C-TTCCEEEE
T ss_pred c-ccCCEEEE
Confidence 6 67888775
No 125
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=63.33 E-value=4.6 Score=45.52 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=49.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC--CCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc-----cccc-c-ccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP--GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV-----ASRG-L-DFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~--gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv-----aaRG-L-D~~p~ 91 (454)
+.++||.++|...+...+..|....+ ++.+..+||+.+...+.. .+.....|+|||.- +.++ + .+ ..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~---~~~~~~~IvI~Tp~~L~~~l~~~~~~~l-~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSL-SI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCH---HHHHHCSEEEECHHHHHHHHHSSSCCCG-GG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHH---HhccCCCEEEecHHHHHHHHHcCccccc-cC
Confidence 67899999999999998888887654 889999999986544322 12225789999943 2222 3 55 67
Q ss_pred ccEEEe
Q 012877 92 VDWVVQ 97 (454)
Q Consensus 92 Vd~VIq 97 (454)
+++||-
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 126
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=62.75 E-value=34 Score=36.96 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeec--------------------CCC--C---H
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLY--------------------GRM--K---Q 59 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LH--------------------G~m--s---q 59 (454)
...|.-++..++... +.++||.+++...+..++..|..++|+..|..+- ... + .
T Consensus 38 gs~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~ 116 (664)
T 1c4o_A 38 GTGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIE 116 (664)
T ss_dssp TSCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHH
T ss_pred CcHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHH
Confidence 345666666777543 5689999999999999999999988765555443 232 2 4
Q ss_pred HHHHHHHHHHhc-CCcEEEecccccccc
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGL 86 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGL 86 (454)
..|..++..... ...|+|||-.+..|+
T Consensus 117 ~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 117 RLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 578899999987 666777775554554
No 127
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=61.26 E-value=17 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMK 58 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~ms 58 (454)
...++||||.+...+...+..|..+ |+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEM--GYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHT--TCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHc--CCCCEEec-cCHH
Confidence 4678999999998888999999887 775 5566 8865
No 128
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.94 E-value=21 Score=40.03 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=45.6
Q ss_pred HhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 17 KAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 17 k~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
....+..++|.++|+..+...++.+..+. -|+.+.++.|+++...|...+ .+.|+++|+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~-----~~dIv~gTp 180 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY-----AADITYSTN 180 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH-----HSSEEEEEH
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECc
Confidence 44456789999999999988877766542 389999999999986654332 578999996
No 129
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=59.66 E-value=16 Score=40.89 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=44.9
Q ss_pred HhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 17 KAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 17 k~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
....+..++|.++|+..+..+++.+..+. -|+.+.++.|+++...|...+ .+.|+|+|.
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~-----~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY-----AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECC
Confidence 34456789999999999988887776542 389999999999976544322 578999996
No 130
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.21 E-value=8.1 Score=37.65 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC---CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc-------cccccC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR---PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-------RGLDFN 89 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~---~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa-------RGLD~~ 89 (454)
..++||.++|+..+..++..+..+. +++.+...+|+..... ... ...|+|+|.-.- ..+++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~- 166 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP- 166 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCG-
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcCh-
Confidence 4489999999999999888877653 4677777777754321 113 568999995421 35666
Q ss_pred CCccEEEe
Q 012877 90 KAVDWVVQ 97 (454)
Q Consensus 90 p~Vd~VIq 97 (454)
..+++||-
T Consensus 167 ~~~~~iVi 174 (412)
T 3fht_A 167 KKIKVFVL 174 (412)
T ss_dssp GGCCEEEE
T ss_pred hhCcEEEE
Confidence 77888875
No 131
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=58.32 E-value=7.7 Score=32.67 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+. +..|.||+..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSH--GYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT--TCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHc--CCCCeEEeCCcHHH
Confidence 3578999999998888999999987 884 8899999754
No 132
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=58.21 E-value=8.1 Score=32.40 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+..++..|..+ |+. +..|.|++..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM--GLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH--TCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc--CCCCeEEecCCHHH
Confidence 4678999999988888899999887 885 9999999754
No 133
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=56.45 E-value=8.7 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+. +..|.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA--GFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH--HCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc--CCCCeEEeCCcHHH
Confidence 3578999999988888899999887 875 8889999764
No 134
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=56.38 E-value=28 Score=39.36 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 16 IKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 16 Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
+....+..++|.++|...+...++.+..+. -|+.+.++.|+++...|...+ .+.|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y-----~~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY-----NADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----HSSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECc
Confidence 444456789999999999887777765542 389999999999976665433 478999996
No 135
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=56.34 E-value=28 Score=32.07 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHHHHHHHHHHHhcCCcEEEecc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD 80 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~~R~~il~~F~~~~~VLVaTD 80 (454)
-|.-+...++... +.++||+|++...+..++..|..+ ++. +..++|+... ...|+|+|.
T Consensus 120 GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~--~~~~v~~~~g~~~~------------~~~i~v~T~ 179 (237)
T 2fz4_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIKE------------LKPLTVSTY 179 (237)
T ss_dssp THHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGG--CGGGEEEESSSCBC------------CCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC------------cCCEEEEeH
Confidence 4555555555443 678999999999999999999884 778 8889987642 467888883
No 136
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=56.15 E-value=13 Score=30.11 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=31.8
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCC
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMK 58 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~ms 58 (454)
....++||||.+...+...+..|..+ |+....|.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHEL--GYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHT--TCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHC--CCCEEEecCCHH
Confidence 34678999999998888999999887 775588889975
No 137
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=55.67 E-value=19 Score=34.62 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=50.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc------ccccccCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNK 90 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva------aRGLD~~p 90 (454)
.+.++||.++|+..+..+++.+..+. .++.+..++|+.... ... ...|+|+|.-. ...+++ .
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~-~ 144 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQL-Q 144 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCC-T
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccc-c
Confidence 45689999999999999999988753 356777777764321 123 67899999542 334567 7
Q ss_pred CccEEEecC
Q 012877 91 AVDWVVQVD 99 (454)
Q Consensus 91 ~Vd~VIq~D 99 (454)
.+++||-=.
T Consensus 145 ~~~~iIiDE 153 (395)
T 3pey_A 145 KIKIFVLDE 153 (395)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 888887633
No 138
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=55.36 E-value=10 Score=32.36 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=30.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMK 58 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~ms 58 (454)
...++||||.+...+...+..|..+ |+ .+..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA--GITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT--TCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc--CCcceEEEcCChh
Confidence 4678999999988888888899887 88 5899999975
No 139
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=55.26 E-value=11 Score=32.28 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq 59 (454)
..++||||.+...+...+..|..+ |+. +..|.||+..
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAA 93 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHT--TCCSEEECTTHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHc--CCCCEEEecCHHHH
Confidence 568999999999999999999887 874 8889999653
No 140
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=55.08 E-value=6.8 Score=32.57 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=31.0
Q ss_pred CCcEEEEeCChHH--HHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQ--VKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~--v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
..++||||.+... +...+..|... |+.+..|.||+..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~--G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSA--GFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHH--TCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHc--CCeEEEeCCcHHH
Confidence 5689999998776 77888889887 8899999999764
No 141
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=54.44 E-value=19 Score=40.93 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-----cccc-cccCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-----ASRG-LDFNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-----aaRG-LD~~p~V 92 (454)
.+.++||.++++..+..++..|...++++.+..+||+.+ .+ ...|+|+|.- +.++ ..+ ..+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l-~~l 148 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLI-RDV 148 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGG-GGE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhh-cCC
Confidence 467899999999999999999999878899999999875 23 6789999853 2233 345 678
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
.+||-
T Consensus 149 ~lvVi 153 (997)
T 4a4z_A 149 EFVIF 153 (997)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 142
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=53.94 E-value=29 Score=39.42 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=47.1
Q ss_pred HHhcCCCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhcCCcEEEeccc
Q 012877 16 IKAHLNSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTDV 81 (454)
Q Consensus 16 Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTDv 81 (454)
+....+..++|.++|...+...++.+..++ -|+.+.++.|+++...|...+ .++|+++|.-
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay-----~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY-----LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH-----TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc-----CCCEEEECch
Confidence 444456789999999999988887776642 389999999999976665443 5789999963
No 143
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=53.17 E-value=43 Score=29.35 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccccccCCCccEEEecC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRGLDFNKAVDWVVQVD 99 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p~Vd~VIq~D 99 (454)
...+.|.|.+..++..+...|... |+++..+.++.. . ...|.|+|--.+.|+-| +.||-++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~--gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf----~~V~~~~ 122 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKAR--GEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF----DAVIVWN 122 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTT--TCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE----EEEEEET
T ss_pred CCcEEEEecCHHHHHHHHHHHHHc--CCcceeeccccc------------ccCCCeEEEEccccCCcCC----CEEEEec
Confidence 456778888888888888888765 777766655421 2 45799999999999999 4566666
Q ss_pred CC
Q 012877 100 CP 101 (454)
Q Consensus 100 ~P 101 (454)
+.
T Consensus 123 ~~ 124 (174)
T 3dmn_A 123 AN 124 (174)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 144
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=52.82 E-value=52 Score=35.44 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecC--------------------CC--C---H
Q 012877 5 LEQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYG--------------------RM--K---Q 59 (454)
Q Consensus 5 ~~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG--------------------~m--s---q 59 (454)
...|.-++..++... +.++||.+++...+..++..|..++|+..|..+-+ .. + .
T Consensus 42 gs~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~ 120 (661)
T 2d7d_A 42 GTGKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID 120 (661)
T ss_dssp TSCHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHH
T ss_pred CcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHH
Confidence 344555666677554 45899999999999999999999877655554431 11 1 4
Q ss_pred HHHHHHHHHHhc-CCcEEEeccccccccccCC----CccEEEecCCCCChhHHHHHH
Q 012877 60 DRRMAIYAQFCE-KRSVLFCTDVASRGLDFNK----AVDWVVQVDCPEDVASYIHRV 111 (454)
Q Consensus 60 ~~R~~il~~F~~-~~~VLVaTDvaaRGLD~~p----~Vd~VIq~D~P~~~~~YIhRv 111 (454)
..|..++..... ...|+|||-.+-.|+=- | ...+.|..+-.-+.+..+++.
T Consensus 121 ~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~-~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 121 KLRHSATSALFERRDVIIIASVSCIYGLGS-PEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp HHHHHHHHHHHHCSCEEEEECGGGGSCBCC-HHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEecHHHHcCCCC-HHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 578999999987 66677777555566532 2 234667777777777777664
No 145
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=52.79 E-value=10 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+ .+..|.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREY--GFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHH--TCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc--CCcceEEEcCcHHH
Confidence 4678999999988888889999887 88 58899999754
No 146
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=52.67 E-value=10 Score=32.57 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=31.0
Q ss_pred CCcEEEEeCCh--HHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSC--KQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~--k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
..++||||.+. ..+...+..|..+ |+.+..|.||+..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~--G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQL--GFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHT--TCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHC--CCeEEEeCCcHHH
Confidence 56899999987 5778888889887 8899999999754
No 147
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=52.66 E-value=76 Score=32.98 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCC-------CC-----HHHHHHHHHHHhc-C
Q 012877 6 EQKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGR-------MK-----QDRRMAIYAQFCE-K 72 (454)
Q Consensus 6 ~~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~-------ms-----q~~R~~il~~F~~-~ 72 (454)
..|--++..++... +.++||.|++...+..++..|..+.|.- +..+-+. .+ ...|..++..... .
T Consensus 25 s~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~ 102 (483)
T 3hjh_A 25 AACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 (483)
T ss_dssp THHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHHHHHHHHHHHHhCC
Confidence 34555666777553 5689999999999999999999876543 4433221 11 1368889998888 7
Q ss_pred CcEEEeccccccccccCC----CccEEEecCCCCChhHHHHHH
Q 012877 73 RSVLFCTDVASRGLDFNK----AVDWVVQVDCPEDVASYIHRV 111 (454)
Q Consensus 73 ~~VLVaTDvaaRGLD~~p----~Vd~VIq~D~P~~~~~YIhRv 111 (454)
..|+|||-.+..+.=.|+ .-.+.|..+-.-+.+.++++.
T Consensus 103 ~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp SSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred CCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 788888865555544423 235678888888888887765
No 148
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=51.47 E-value=13 Score=40.07 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccccc-cCCCcc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGLD-FNKAVD 93 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRGLD-~~p~Vd 93 (454)
+.++|+.++++..+..++..|..+.+ |+.+..+||+.+...+ ......|+|+|+ .+.++.. + ..++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l-~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE------WLGKYDIIIATAEKFDSLLRHGSSWI-KDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG------GGGGCSEEEECHHHHHHHHHHTCTTG-GGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc------ccCCCCEEEECHHHHHHHHHcChhhh-hcCC
Confidence 57899999999999999998864322 8899999998765433 112688999997 2223333 5 6788
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 141 ~vIi 144 (720)
T 2zj8_A 141 ILVA 144 (720)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 149
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=50.46 E-value=12 Score=31.39 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCC
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMK 58 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~ms 58 (454)
...++||||.+.......+..|..+ |+. +..|.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~--G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALN--GFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHH--TCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHc--CCcceEEecCCcc
Confidence 3578999999988888888889887 884 889999984
No 150
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.16 E-value=28 Score=35.03 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHHHHHHHHHHHhcCCcEEEecc-cccc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-VASR 84 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-vaaR 84 (454)
-|.-+.+.++... +.++||.|++...+...+..|..+ ++. +..+||+.+. ...|+|+|. .+..
T Consensus 120 GKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~v~~~~g~~~~------------~~~Ivv~T~~~l~~ 184 (472)
T 2fwr_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIKE------------LKPLTVSTYDSAYV 184 (472)
T ss_dssp CHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGG--CGGGEEEBSSSCBC------------CCSEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhC--CCcceEEECCCcCC------------cCCEEEEEcHHHHH
Confidence 3444444444333 678999999999999999999985 888 9999998753 467888884 2322
Q ss_pred ccc-cCCCccEEEe
Q 012877 85 GLD-FNKAVDWVVQ 97 (454)
Q Consensus 85 GLD-~~p~Vd~VIq 97 (454)
-++ +...+++||-
T Consensus 185 ~~~~~~~~~~liIv 198 (472)
T 2fwr_A 185 NAEKLGNRFMLLIF 198 (472)
T ss_dssp THHHHTTTCSEEEE
T ss_pred HHHHhcCCCCEEEE
Confidence 222 2123666664
No 151
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=49.15 E-value=21 Score=41.10 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEec-----cccccccc-cCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCT-----DVASRGLD-FNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaT-----DvaaRGLD-~~p~V 92 (454)
.+.++||-++|+..+...+..|...+. .+..++|+++ .+ ...|+|+| +.+.+|-. + ..+
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l-~~l 291 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM-REV 291 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH-HHE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc-ccC
Confidence 467899999999999999999999853 7888999986 23 78899999 34555533 6 678
Q ss_pred cEEEec
Q 012877 93 DWVVQV 98 (454)
Q Consensus 93 d~VIq~ 98 (454)
.|||.=
T Consensus 292 ~lVVID 297 (1108)
T 3l9o_A 292 AWVIFD 297 (1108)
T ss_dssp EEEEEE
T ss_pred CEEEEh
Confidence 888863
No 152
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=49.07 E-value=19 Score=38.71 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccccc-cCCCcc
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGLD-FNKAVD 93 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRGLD-~~p~Vd 93 (454)
+.++||.++++..+...+..|+.+.+ |+.+..++|......+ ......|+|+|+ .+.++.. + ..++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~l~~~~~~l-~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE------HLGDCDIIVTTSEKADSLIRNRASWI-KAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS------CSTTCSEEEEEHHHHHHHHHTTCSGG-GGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh------hccCCCEEEECHHHHHHHHHcChhHH-hhcC
Confidence 67999999999999999998854332 7899999998765332 011678999996 3334433 6 6788
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
+||-
T Consensus 141 ~vIi 144 (702)
T 2p6r_A 141 CLVV 144 (702)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 153
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=47.59 E-value=15 Score=34.57 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq~ 60 (454)
...++||||.+...+...+..|..+ |+ .+..|.|++..-
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~--G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATL--DVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHT--TCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHc--CCCCceeeCChHHHH
Confidence 4678999999988888889999887 88 489999998753
No 154
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=44.46 E-value=31 Score=33.16 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCHH
Q 012877 15 FIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQD 60 (454)
Q Consensus 15 ~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq~ 60 (454)
.+......++||||.+...+...+..|... |+ .+..|.||+...
T Consensus 175 ~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~--Gf~nV~~L~GGi~aW 219 (265)
T 4f67_A 175 NLIDKKDKKIAMFCTGGIRCEKTTAYMKEL--GFEHVYQLHDGILNY 219 (265)
T ss_dssp HTGGGTTSCEEEECSSSHHHHHHHHHHHHH--TCSSEEEETTHHHHH
T ss_pred hhhhCCCCeEEEEeCCChHHHHHHHHHHHc--CCCCEEEecCHHHHH
Confidence 333345789999999999999999999887 88 689999997653
No 155
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=44.23 E-value=13 Score=37.65 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=47.3
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc---CCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccc-------cccccCC
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKL---RPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVAS-------RGLDFNK 90 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l---~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaa-------RGLD~~p 90 (454)
.++||.++|+..+..++..+..+ .+++.+....|+..... ... ...|+|+|.-.- ..+++ .
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~-~ 234 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP-K 234 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCG-G
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCc-c
Confidence 37999999999998887776654 34667777766643211 113 568999996533 36777 7
Q ss_pred CccEEEe
Q 012877 91 AVDWVVQ 97 (454)
Q Consensus 91 ~Vd~VIq 97 (454)
.+.+||-
T Consensus 235 ~~~~iVi 241 (479)
T 3fmp_B 235 KIKVFVL 241 (479)
T ss_dssp GCCEEEE
T ss_pred cCCEEEE
Confidence 8998886
No 156
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=43.67 E-value=38 Score=37.17 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=42.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHh--------c-CCcEEEecc
Q 012877 19 HLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFC--------E-KRSVLFCTD 80 (454)
Q Consensus 19 ~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~--------~-~~~VLVaTD 80 (454)
....++||.|+. ..+......|.+..|++.+.++||..........+.-+. . ...|+|+|-
T Consensus 284 ~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVPL-STMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECCT-TTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEECc-hHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 446789999994 456666777788889999999999876554443333221 1 567888884
No 157
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=43.59 E-value=33 Score=34.75 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=39.5
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc
Q 012877 18 AHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV 81 (454)
Q Consensus 18 ~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv 81 (454)
.....++||.|++. .+......|.+..|+..+..+||+... ... ...|+|+|--
T Consensus 83 ~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~ 137 (500)
T 1z63_A 83 ENELTPSLVICPLS-VLKNWEEELSKFAPHLRFAVFHEDRSK---------IKLEDYDIILTTYA 137 (500)
T ss_dssp TTCCSSEEEEECST-THHHHHHHHHHHCTTSCEEECSSSTTS---------CCGGGSSEEEEEHH
T ss_pred cCCCCCEEEEccHH-HHHHHHHHHHHHCCCceEEEEecCchh---------ccccCCcEEEeeHH
Confidence 34457899999964 677777888888888899999998632 112 6678888843
No 158
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=43.15 E-value=78 Score=26.77 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=38.5
Q ss_pred EEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 24 ILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 24 iIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
.+||.+.......+...+.+. |+.+..|++.+....|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikrq--gvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQ--GVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHT--TCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhC--CeEEEEEecCchHHHHHHHHHHHHH
Confidence 467777777777777777765 9999999999999999999999987
No 159
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=42.13 E-value=21 Score=38.33 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=51.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccccc-cCCCc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRGLD-FNKAV 92 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRGLD-~~p~V 92 (454)
.+.++||.++++..+..++..++.+.+ |+.+..++|......+ ......|+|+|+ .+.++.. + ..+
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l-~~~ 146 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWL-NEV 146 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGG-GGE
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHh-hcc
Confidence 367999999999999988888854322 7899999998765432 112688999996 2333433 6 678
Q ss_pred cEEEe
Q 012877 93 DWVVQ 97 (454)
Q Consensus 93 d~VIq 97 (454)
++||-
T Consensus 147 ~~vIi 151 (715)
T 2va8_A 147 NYFVL 151 (715)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 160
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=41.77 E-value=24 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=29.5
Q ss_pred cEEEEeCChHHHHHHHHHHHhc-----CCCCceEeecCCCCHH
Q 012877 23 KILVFLTSCKQVKYVFEAFKKL-----RPGIPLMCLYGRMKQD 60 (454)
Q Consensus 23 KiIVF~sS~k~v~~l~~~L~~l-----~~gi~v~~LHG~msq~ 60 (454)
++||||.+...+...+..|..+ ..+..+..|.|++...
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W 116 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAW 116 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHH
Confidence 8999999988888888888776 1234788899997653
No 161
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=40.14 E-value=34 Score=32.01 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.0
Q ss_pred CCCcEEEEeCCh-HHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSC-KQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~-k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+. ..+..++..|..+ |+ .+..|.||+..
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~--G~~~v~~l~GG~~~ 115 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLY--GHEKVKLLDGGRKK 115 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHT--TCCSEEEETTHHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHc--CCCcEEEecCCHHH
Confidence 457899999884 3566777788876 77 68899999654
No 162
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=39.51 E-value=20 Score=33.67 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=30.1
Q ss_pred CCCcEEEEeCChHH-HHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQ-VKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~-v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+... +..++..|..+ |+ .+..|.|++..
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~--G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTF--GVEKVSILGGGLAG 124 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHT--TCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHc--CCCCEEEecCCHHH
Confidence 46789999998654 77788888887 88 68999999654
No 163
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=38.57 E-value=38 Score=31.79 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHH-hcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFK-KLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~-~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+...+...+..|. .+ |+ .+..|.|++..
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~--G~~~v~~l~GG~~~ 271 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLL--GYPHVKNYDGSWTE 271 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTS--CCSCEEEESSHHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHc--CCCCcceeCchHHH
Confidence 46789999999888888888888 66 87 68899999753
No 164
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=38.27 E-value=32 Score=32.05 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.0
Q ss_pred cCCCcEEEEeCChH-HHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 19 HLNSKILVFLTSCK-QVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 19 ~~~~KiIVF~sS~k-~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
....++||||.+.. .+..++..|..+ |+ .+..|.||+..
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~--G~~~v~~L~GG~~~ 119 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVI--GQQRYHYLNGGLTA 119 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHT--TCCCEEEETTHHHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHc--CCCCeEEecCCHHH
Confidence 34678999998765 677778888887 77 58899999653
No 165
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=37.65 E-value=23 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+ .+..|.|++..
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~--G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKAL--GYPRVKGYAGSWGE 260 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHT--TCSCEEECSSHHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHc--CCCCceeeCCcHHH
Confidence 4678999999998888888889876 88 48899998753
No 166
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=37.64 E-value=48 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCcEEE-Ee-CChHHHH----HHHHHHHhcCCCC---ceEeecCCCCHH
Q 012877 8 KLDMLWSFIKAHLNSKILV-FL-TSCKQVK----YVFEAFKKLRPGI---PLMCLYGRMKQD 60 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIV-F~-sS~k~v~----~l~~~L~~l~~gi---~v~~LHG~msq~ 60 (454)
.+..|...+... +.++|| || .+..... .+...|..+ |+ .+..|.||+...
T Consensus 55 ~~~~l~~~l~~~-~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~--G~~~~~v~~L~GG~~~W 113 (152)
T 2j6p_A 55 MYEKLAKTLFEE-KKELAVFHCAQSLVRAPKGANRFALAQKKL--GYVLPAVYVLRGGWEAF 113 (152)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSSSSSHHHHHHHHHHHHHHHH--TCCCSEEEEETTHHHHH
T ss_pred HHHHHHHHhccc-CCCEEEEEcCCCCCccHHHHHHHHHHHHHc--CCCCCCEEEEcCcHHHH
Confidence 344454545432 344444 59 4533332 344677776 75 688899997653
No 167
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=37.14 E-value=45 Score=31.07 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc-cccc--cccCCCccE
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLR--PGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV-ASRG--LDFNKAVDW 94 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~--~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv-aaRG--LD~~p~Vd~ 94 (454)
..++||.++|...+...++.|.... ++..+..++|+.+... -.. ...|+|+|.- +.+- ..+ ..+++
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~-~~~~~ 228 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWF-SQFGM 228 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGG-GGEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHH-hhCCE
Confidence 4589999999999999999888763 2346677877765422 111 5789999853 2221 124 55666
Q ss_pred EEe
Q 012877 95 VVQ 97 (454)
Q Consensus 95 VIq 97 (454)
||-
T Consensus 229 vIi 231 (282)
T 1rif_A 229 MMN 231 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 168
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=36.07 E-value=49 Score=37.63 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=49.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhcCCcEEEecc-----ccccc-cccCCCcc
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCEKRSVLFCTD-----VASRG-LDFNKAVD 93 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~~~~VLVaTD-----vaaRG-LD~~p~Vd 93 (454)
.+.++||.++|+..+...+..|...+. .+..++|+.+.. ....|+|+|. .+.+| ..+ ..++
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd~~~~----------~~~~IvV~Tpe~L~~~L~~~~~~l-~~l~ 194 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDITIN----------PDAGCLVMTTEILRSMLYRGSEVM-REVA 194 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSSCEEC----------TTCSEEEEEHHHHHHHHHHTCTTG-GGEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCCCccC----------CCCCEEEEcHHHHHHHHHcCcchh-hcCC
Confidence 467899999999999999999988753 788899987531 1578999996 33344 456 7888
Q ss_pred EEEe
Q 012877 94 WVVQ 97 (454)
Q Consensus 94 ~VIq 97 (454)
|||-
T Consensus 195 lVVi 198 (1010)
T 2xgj_A 195 WVIF 198 (1010)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 169
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=35.95 E-value=43 Score=31.25 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHh-cCCCCc-eEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKK-LRPGIP-LMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~-l~~gi~-v~~LHG~msq 59 (454)
...++||||.+...+...+..|.. + |+. +..|.|++..
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~--G~~~v~~l~GG~~~ 264 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELL--GHQNVKNYDGSWTE 264 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTS--CCSCEEEESSHHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHc--CCCcceeeCchHHH
Confidence 467899999998888888888875 5 774 8899998653
No 170
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.80 E-value=73 Score=25.93 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEecc
Q 012877 10 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTD 80 (454)
Q Consensus 10 ~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTD 80 (454)
..|..+|......-.+..+++...+ ...+... ...++.+.-.|+...-..++..++. ...|++.|+
T Consensus 34 ~~l~~~L~~~~~~~~v~~~~~~~~a---l~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 34 DAMCQLLTLQPDVESVLQAKNGQEA---IQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp HHHHHHHHTSTTEEEEEEESSHHHH---HHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHHHHhCCCcEEEEEECCHHHH---HHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeC
Confidence 3444555443322344445544433 2333333 3444555444443334445555544 334444443
No 171
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=34.85 E-value=26 Score=30.22 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=29.2
Q ss_pred CCcEEEEeCChH---------HHHHHHHHHHhcCCCCceEeecCCCC
Q 012877 21 NSKILVFLTSCK---------QVKYVFEAFKKLRPGIPLMCLYGRMK 58 (454)
Q Consensus 21 ~~KiIVF~sS~k---------~v~~l~~~L~~l~~gi~v~~LHG~ms 58 (454)
..++||||.+.. .+..++..|... |+.+..|.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~--G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE--GKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTT--TCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhC--CCcEEEeCCcHH
Confidence 568999999873 466778888876 889999999964
No 172
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=33.65 E-value=36 Score=31.05 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=32.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |..+..|.|++..
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~--G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSL--GVRARNYLGSMHE 220 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHT--TCEEEECSSHHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHc--CCCcEEecCcHHH
Confidence 4678999999999999999999887 6778899999764
No 173
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=33.59 E-value=56 Score=33.55 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=42.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCC--CceEeecCCCCHHHHHHHHHHHhc-CCcEEEecccc------ccccccCCC
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPG--IPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVA------SRGLDFNKA 91 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~g--i~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDva------aRGLD~~p~ 91 (454)
+.++||.++++..+..+++.|+.+... +.+....|+... .-.. ...|+|+|.-. ...+.+ ..
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~-~~ 259 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP--------KGAKIDAQIVIGTPGTVMDLMKRRQLDA-RD 259 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCC-TT
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc--------ccccCCCCEEEECHHHHHHHHHcCCccc-cC
Confidence 458999999999999999999887533 233333333211 1113 67899999542 224567 78
Q ss_pred ccEEEec
Q 012877 92 VDWVVQV 98 (454)
Q Consensus 92 Vd~VIq~ 98 (454)
+++||-=
T Consensus 260 ~~lIIiD 266 (508)
T 3fho_A 260 IKVFVLD 266 (508)
T ss_dssp CCEEEEC
T ss_pred CCEEEEe
Confidence 8888863
No 174
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=32.92 E-value=36 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCK-QVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k-~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+.. .+..++..|..+ |+ .+..|.|++..
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~--G~~~v~~l~GG~~~ 117 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYN--GHKDVRLMNGGRQK 117 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHT--TCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHc--CCCCeEEecCCHHH
Confidence 4678999998865 566788888876 77 58899999653
No 175
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=32.55 E-value=45 Score=32.33 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHhc---CCCcEEEEeCChH-HHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 11 MLWSFIKAH---LNSKILVFLTSCK-QVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 11 ~L~~~Lk~~---~~~KiIVF~sS~k-~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
.|...+... ...++||||.+.. .+..++..|+.+ |+ .+..|.||+..
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~--G~~~V~~L~GG~~~ 149 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLF--GHADVRLLNGGRDL 149 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHT--TCSCEEEETTHHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc--CCCceEEccCCHHH
Confidence 344445442 4678999998765 677788888887 87 48999999643
No 176
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=32.18 E-value=1.1e+02 Score=24.41 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHh-cCCCCceEeecCCCCHHHHHHHHHHHhc---CCcEEEecccc---
Q 012877 10 DMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK-LRPGIPLMCLYGRMKQDRRMAIYAQFCE---KRSVLFCTDVA--- 82 (454)
Q Consensus 10 ~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~-l~~gi~v~~LHG~msq~~R~~il~~F~~---~~~VLVaTDva--- 82 (454)
..|..+|.......++.+.+....+..+ ... . .+.++.+--.|+...-..++..++. ...|++.|...
T Consensus 34 ~~l~~~L~~~g~~~v~~~~~~~~~~~~~---~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~ 108 (146)
T 4dad_A 34 AHLARLVGDAGRYRVTRTVGRAAQIVQR---TDGLD--AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQ 108 (146)
T ss_dssp HHHHHHHHHHCSCEEEEECCCHHHHTTC---HHHHT--TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHH
T ss_pred HHHHHHHhhCCCeEEEEeCCHHHHHHHH---HhcCC--CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHH
Confidence 3455555554324454444433232222 221 2 3445555555555555666666655 34455555432
Q ss_pred --ccccccCCCccEEEecCCCCChhHHHHHHhccc
Q 012877 83 --SRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTA 115 (454)
Q Consensus 83 --aRGLD~~p~Vd~VIq~D~P~~~~~YIhRvGRtg 115 (454)
.+.+.. . ++-+|. -|.++..+..++.++.
T Consensus 109 ~~~~~~~~-g-a~~~l~--Kp~~~~~L~~~i~~~~ 139 (146)
T 4dad_A 109 TLLDAMRA-G-VRDVLR--WPLEPRALDDALKRAA 139 (146)
T ss_dssp HHHHHHTT-T-EEEEEE--SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-C-CceeEc--CCCCHHHHHHHHHHHH
Confidence 122333 2 222222 2556666666655543
No 177
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=31.06 E-value=49 Score=31.42 Aligned_cols=39 Identities=13% Similarity=-0.018 Sum_probs=31.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCCc-eEeecCCCCHH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGIP-LMCLYGRMKQD 60 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~-v~~LHG~msq~ 60 (454)
...++||||.+...+...+..|..+ |+. +..|.|++...
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~--G~~~v~~~~GG~~~W 278 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLC--GKPDVAIYDGSWFEW 278 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHT--TCCCCEEESSHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHc--CCCCceeeCCcHHHH
Confidence 4678999999988888888888876 875 88999997653
No 178
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=30.79 E-value=50 Score=33.21 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=32.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+...+..++..|..+ |+ .+..|.|+++.
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~--G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYA--GVKDVRLLDGGWQT 240 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHH--TCSCEEEETTTHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHc--CCCCeEEECCCHHH
Confidence 4678999999998888889999887 88 58899999764
No 179
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=26.99 E-value=44 Score=31.74 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=28.4
Q ss_pred CCCcEEEEeCC--h-HHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTS--C-KQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS--~-k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+ . ..+..++..|..+ |+ .+..|.||+..
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~--G~~~V~~L~GG~~~ 132 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVF--GHRTVSVLNGGFRN 132 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHT--TCCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHc--CCCcEEEcCCCHHH
Confidence 45789999987 3 3366677788876 77 58899999654
No 180
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=26.75 E-value=33 Score=28.13 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCcEEEEeCChHH---------HHHHHHHHHhcCCCCceEeecCCCC
Q 012877 21 NSKILVFLTSCKQ---------VKYVFEAFKKLRPGIPLMCLYGRMK 58 (454)
Q Consensus 21 ~~KiIVF~sS~k~---------v~~l~~~L~~l~~gi~v~~LHG~ms 58 (454)
..++||||.+... +..+...|... |+.+..|.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~--G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE--GKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHT--TCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHc--CCcEEEEccCHH
Confidence 4689999988654 34567777776 779999999965
No 181
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=25.98 E-value=1.3e+02 Score=31.88 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=35.6
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCC-CCceEeecCCCCHHHHHHHHHHHhc------CCcEEEecc
Q 012877 22 SKILVFLTSCKQVKYVFEAFKKLRP-GIPLMCLYGRMKQDRRMAIYAQFCE------KRSVLFCTD 80 (454)
Q Consensus 22 ~KiIVF~sS~k~v~~l~~~L~~l~~-gi~v~~LHG~msq~~R~~il~~F~~------~~~VLVaTD 80 (454)
.++||.|++ ..+..-...|.+..| .+.++.+||+. ...+...+..|.. ...|+|+|-
T Consensus 115 ~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty 178 (644)
T 1z3i_X 115 DKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISY 178 (644)
T ss_dssp SCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEH
T ss_pred CcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeH
Confidence 468999997 455555555555443 36677788764 3344555666654 257888884
No 182
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=25.55 E-value=88 Score=32.51 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCCcEEEEeCChHHHHHHH-HHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccccccc----------cc
Q 012877 20 LNSKILVFLTSCKQVKYVF-EAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDVASRG----------LD 87 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~-~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDvaaRG----------LD 87 (454)
...++||.|+|...+...+ +.|... +..+..++++. .. ...|+|+|--.-.+ +.
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~--~~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPF--GDARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp SCCCEEEEEC-----------CCTTT--CSSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhc--chhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCC
Confidence 5678999999988888887 777655 44555555432 23 67899998543222 23
Q ss_pred cCCCccEEEecCC
Q 012877 88 FNKAVDWVVQVDC 100 (454)
Q Consensus 88 ~~p~Vd~VIq~D~ 100 (454)
. ..+++||-=.+
T Consensus 300 ~-~~~~lvIiDEa 311 (590)
T 3h1t_A 300 Q-DFFDLIIIDEC 311 (590)
T ss_dssp T-TSCSEEEESCC
T ss_pred C-CccCEEEEECC
Confidence 3 45777776443
No 183
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=25.38 E-value=41 Score=32.02 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHh
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKK 43 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~ 43 (454)
.++..-+.+|.......-|+|++|+.++..+...+..
T Consensus 51 ~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~ 87 (241)
T 2xzm_B 51 QKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAG 87 (241)
T ss_dssp HHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH
Confidence 3455556777764445567899999988776655544
No 184
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=25.17 E-value=2.5e+02 Score=22.45 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 012877 12 LWSFIKA 18 (454)
Q Consensus 12 L~~~Lk~ 18 (454)
|..+|..
T Consensus 31 l~~~L~~ 37 (152)
T 3eul_A 31 VVRALSL 37 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3344433
No 185
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=25.04 E-value=1.6e+02 Score=25.88 Aligned_cols=48 Identities=8% Similarity=0.044 Sum_probs=39.6
Q ss_pred CCcEEEEeCC---------------------hHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 21 NSKILVFLTS---------------------CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 21 ~~KiIVF~sS---------------------~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
.+-+|||.+. ..-++.|...|..+ |+.| .+|-.++..+-..++..|..
T Consensus 23 rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~L--gF~V-~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 23 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL--HFEI-KPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp CCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHT--TCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred ceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHC--CCEE-EEecCCCHHHHHHHHHHHHH
Confidence 5678888873 46678899999998 8887 56788999999999999976
No 186
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=25.02 E-value=1.4e+02 Score=32.32 Aligned_cols=67 Identities=22% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc-CCcEEEeccc---cccccccCCCccEEE
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE-KRSVLFCTDV---ASRGLDFNKAVDWVV 96 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~-~~~VLVaTDv---aaRGLD~~p~Vd~VI 96 (454)
+.++||.++|+..+..+++.+...+ +..+...+|+.. .. ...|+|+|.- ....+++ ..+++||
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l-~~l~~lV 323 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSG-GAYDIII 323 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCT-TSCSEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCccc-CcccEEE
Confidence 4589999999999999998886653 667777888754 34 7899999973 2335666 7789888
Q ss_pred ecCC
Q 012877 97 QVDC 100 (454)
Q Consensus 97 q~D~ 100 (454)
-=.+
T Consensus 324 lDEA 327 (666)
T 3o8b_A 324 CDEC 327 (666)
T ss_dssp ETTT
T ss_pred Eccc
Confidence 7444
No 187
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=24.90 E-value=2.4e+02 Score=21.86 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCcEEEEe------CChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHH
Q 012877 21 NSKILVFL------TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQF 69 (454)
Q Consensus 21 ~~KiIVF~------sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F 69 (454)
..+++||+ ++|-.|..+..+|..+ +++...+.=......+..+...+
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~--~i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNST--GVEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHH--TCCCEEEEGGGCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHC--CCCeEEEECCCCHHHHHHHHHHH
Confidence 34699998 5788888888889887 77766665555555555444444
No 188
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=24.32 E-value=56 Score=33.68 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 21 NSKILVFLTSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 21 ~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
..++||||.+...+...+..|... |+.+..|.|++..
T Consensus 524 ~~~iv~~c~~g~rs~~a~~~l~~~--G~~v~~l~gG~~~ 560 (565)
T 3ntd_A 524 DKEIIIFSQVGLRGNVAYRQLVNN--GYRARNLIGGYRT 560 (565)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHT--TCCEEEETTHHHH
T ss_pred cCeEEEEeCCchHHHHHHHHHHHc--CCCEEEEcChHHH
Confidence 468999999999999999999887 8899999999764
No 189
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.77 E-value=58 Score=32.10 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhc
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 44 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l 44 (454)
.+|..-+.+|....+..-|+|++|+.+...+...+...
T Consensus 60 e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~ 97 (305)
T 3iz6_A 60 EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQY 97 (305)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 35555667776654455688999999888776666553
No 190
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=22.97 E-value=1.6e+02 Score=28.02 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=40.5
Q ss_pred CCCcEEEEeC---------------------ChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 20 LNSKILVFLT---------------------SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 20 ~~~KiIVF~s---------------------S~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
+.+-+|||.| |..-++.|...|+.+ |+.|. +|-.++..+-..++.+|..
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~L--GF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL--HFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHT--TCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHC--CCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3567899987 346688999999998 99864 6678999999999999986
No 191
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=22.71 E-value=73 Score=31.71 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=27.9
Q ss_pred CCCcEEEEe-CCh-HHHHHHHHHHHhcCCCCceEeecCCCCH
Q 012877 20 LNSKILVFL-TSC-KQVKYVFEAFKKLRPGIPLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~-sS~-k~v~~l~~~L~~l~~gi~v~~LHG~msq 59 (454)
...++|||| .+. ..+..++..|+.+ |+.+..|.||+..
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~--G~~V~~L~GG~~a 133 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSL--GADAYVINGGFQA 133 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHH--TCCEEEETTTTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc--CCeEEEeCCCHHH
Confidence 467899999 443 3333667778877 7789999999864
No 192
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=22.20 E-value=32 Score=21.34 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=7.8
Q ss_pred hhhccccccccc
Q 012877 399 MERGRRKKAKIY 410 (454)
Q Consensus 399 ~~~~~~~~~~~~ 410 (454)
+++||.|+++-|
T Consensus 17 deepprkrkrlw 28 (28)
T 3ukw_C 17 DEEPPRKRKRLW 28 (28)
T ss_dssp GGSCCSSCCCCC
T ss_pred ccCcchhhhccC
Confidence 356777776655
No 193
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.82 E-value=41 Score=31.33 Aligned_cols=89 Identities=10% Similarity=0.193 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhcCCCCceE--eecCCC-CHHHHHHHHHHHhcCCcEEEecccc-
Q 012877 7 QKLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKLRPGIPLM--CLYGRM-KQDRRMAIYAQFCEKRSVLFCTDVA- 82 (454)
Q Consensus 7 ~Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l~~gi~v~--~LHG~m-sq~~R~~il~~F~~~~~VLVaTDva- 82 (454)
.++..-+.+|... ....|+|++|+.++..+...+.... |.... ..-||| +... +..|. ..++||.||.-
T Consensus 54 ~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~-g~~~v~~rwlgG~LTN~~----~~~f~-~PdlliV~Dp~~ 126 (208)
T 1vi6_A 54 ERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVV-GSDYIVGRFIPGTLTNPM----LSEYR-EPEVVFVNDPAI 126 (208)
T ss_dssp HHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHH-CCEEEESSCCTTTTTCTT----STTCC-CCSEEEESCTTT
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHh-CCeeecCEECCCcccChh----hHhhC-CCCEEEEECCCc
Confidence 3555556777666 6677899999998877666555431 32221 112332 2111 11222 45677777753
Q ss_pred -------ccccccCCCccEEEecCCCCCh
Q 012877 83 -------SRGLDFNKAVDWVVQVDCPEDV 104 (454)
Q Consensus 83 -------aRGLD~~p~Vd~VIq~D~P~~~ 104 (454)
+.-++| | |=.+++.|||.+.
T Consensus 127 e~~ai~EA~~l~I-P-vIalvDTn~~p~~ 153 (208)
T 1vi6_A 127 DKQAVSEATAVGI-P-VVALCDSNNSSAD 153 (208)
T ss_dssp THHHHHHHHHTTC-C-EEEEECTTCCCTT
T ss_pred chhHHHHHHHhCC-C-EEEEeCCCCCccc
Confidence 234556 4 3344566665543
No 194
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=21.47 E-value=57 Score=31.26 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhc
Q 012877 8 KLDMLWSFIKAHLNSKILVFLTSCKQVKYVFEAFKKL 44 (454)
Q Consensus 8 Kl~~L~~~Lk~~~~~KiIVF~sS~k~v~~l~~~L~~l 44 (454)
+|..-+.+|....+...|+|++|+.+.......+...
T Consensus 56 ~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~ 92 (252)
T 3u5c_A 56 KLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAH 92 (252)
T ss_dssp HHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHH
Confidence 5555566776544455678999999988777766654
No 195
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.37 E-value=2.8e+02 Score=22.22 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=30.3
Q ss_pred CCcEEEEe------CChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHH
Q 012877 21 NSKILVFL------TSCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAI 65 (454)
Q Consensus 21 ~~KiIVF~------sS~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~i 65 (454)
..+++||. ++|..|..+..+|... |++...+.=......|..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~--gi~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKH--NIQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHT--TCCCEEEEGGGCHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHc--CCCeEEEECcCCHHHHHHH
Confidence 46899999 6899999999999987 7776555433344444433
No 196
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.15 E-value=1.9e+02 Score=24.96 Aligned_cols=48 Identities=6% Similarity=0.115 Sum_probs=38.3
Q ss_pred CCcEEEEeC--------------ChHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 21 NSKILVFLT--------------SCKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 21 ~~KiIVF~s--------------S~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
.+-+|||.+ |..-++.+...|..+ |+.|. +|-.++..+-..++..|..
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L--gF~V~-~~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNL--KYEVR-NKNDLTREEIVELMRDVSK 77 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHT--TCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHC--CCEEE-EeeCCCHHHHHHHHHHHHH
Confidence 346788865 345678999999998 88854 5678999999999999987
No 197
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=21.13 E-value=54 Score=31.42 Aligned_cols=38 Identities=13% Similarity=-0.055 Sum_probs=30.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCCC-ceEeecCCCCH
Q 012877 20 LNSKILVFLTSCKQVKYVFEAFKKLRPGI-PLMCLYGRMKQ 59 (454)
Q Consensus 20 ~~~KiIVF~sS~k~v~~l~~~L~~l~~gi-~v~~LHG~msq 59 (454)
...++||||.+...+...+..|..+ |+ .+..|.|++..
T Consensus 253 ~~~~iv~yC~sG~rs~~a~~~L~~~--G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 253 LSKPLVATCGSGVTACHVALGAYLC--GKPDVPIYDGSWVE 291 (302)
T ss_dssp TTSCEEEECSSSSTTHHHHHHHHTT--TCCCCCEESSHHHH
T ss_pred CCCCEEEECCChHHHHHHHHHHHHc--CCCCeeEeCCcHHH
Confidence 3578999999977777777788776 77 68888998765
No 198
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=21.10 E-value=2.1e+02 Score=27.79 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=39.9
Q ss_pred CcEEEEeCC-----------hHHHHHHHHHHHhcCCCCceEeecCCCCHHHHHHHHHHHhc
Q 012877 22 SKILVFLTS-----------CKQVKYVFEAFKKLRPGIPLMCLYGRMKQDRRMAIYAQFCE 71 (454)
Q Consensus 22 ~KiIVF~sS-----------~k~v~~l~~~L~~l~~gi~v~~LHG~msq~~R~~il~~F~~ 71 (454)
+-+|||.|. ..-++.|...|+.+ |+.|. +|-.++..+-..++.+|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~L--GF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL--GYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHT--TCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHC--CCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999987 56789999999998 99865 6678999999999999964
No 199
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=20.25 E-value=3e+02 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCcEEEE-e-CChHHHHHHHHHH---HhcCCCCceEeecCC
Q 012877 21 NSKILVF-L-TSCKQVKYVFEAF---KKLRPGIPLMCLYGR 56 (454)
Q Consensus 21 ~~KiIVF-~-sS~k~v~~l~~~L---~~l~~gi~v~~LHG~ 56 (454)
++.+||+ . ++|..|......| ...++++.++.++..
T Consensus 37 gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d 77 (165)
T 3ha9_A 37 GDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFW 77 (165)
T ss_dssp SSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence 4445553 2 2344444433333 333457777777765
Done!