BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012879
         (454 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
 pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
          Length = 414

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAI 217
           +W  I+D +  MN S    +L R + A  + +PS I   A+LP I
Sbjct: 34  NWNEIVDSFDDMNLSE---SLLRGIYAYGFEKPSAIQQRAILPCI 75


>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAI 217
           +W  I+D +  MN S    +L R + A  + +PS I   A+LP I
Sbjct: 8   NWNEIVDSFDDMNLSE---SLLRGIYAYGFEKPSAIQQRAILPCI 49


>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
          Length = 530

 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 37/137 (27%)

Query: 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGEL-EFARSLFEEM 166
           HVYV  AL+  Y S    KD S           V + +   GL K+G++ E+        
Sbjct: 391 HVYVTAALMEYYCS----KDKS-----------VAFKIFELGLKKYGDIPEYV------- 428

Query: 167 PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEI-TILAVLPAIWQN-GDVK 224
                      ID  + +N  N    LF +++      P +   I A   A   N GD+ 
Sbjct: 429 --------LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480

Query: 225 SCQLIHGYGEKRGFTAF 241
           S   +    EKR FTAF
Sbjct: 481 SILKV----EKRRFTAF 493


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,959,597
Number of Sequences: 62578
Number of extensions: 525552
Number of successful extensions: 1265
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 3
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)