BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012879
(454 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/464 (55%), Positives = 322/464 (69%), Gaps = 14/464 (3%)
Query: 3 ILQNSQTPNNITTQIHSHLLTTNSLLHHSQ-------LFNTLLHFYSLAESPQKAFLLYK 55
++Q ++ I Q+HSH T+ LL H + LFN LL YSL E+P A+ LY
Sbjct: 42 LMQKYESNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYD 101
Query: 56 QLQQIY--THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVIS--KVGFQSHVYV 111
QLQ+++ + + LPP FDSFTY FL++ + P+L + K+GF+SHVYV
Sbjct: 102 QLQRLHFLSDHNKSLPP-FDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYV 160
Query: 112 NTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNV 171
TALV MY+ G + D+ K+FDEMPERN VTWNVMITGL G+ E A E+MP R V
Sbjct: 161 QTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTV 220
Query: 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHG 231
VSWT IIDGY R+++ EA+ LF +MVAC+ +P+EITILA+LPA+W GD+K C +H
Sbjct: 221 VSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHA 280
Query: 232 YGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGM 291
Y KRGF DIRV N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGM
Sbjct: 281 YVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGM 340
Query: 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG-LNFFDKMVEECEVLPDIKHY 350
GKEAV F M+++GLKPNRVT +SVLNACSHGGL EE L FF+ MV E ++ PD+KHY
Sbjct: 341 GKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHY 400
Query: 351 GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410
GCL+DML R GRLE+AEK AL IP E VVWR LLGACS + + E+ ERVTRK++E+E
Sbjct: 401 GCLVDMLRRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELE 459
Query: 411 RGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
R +GGDYVLM NI G GRF DA+R R+ MD R K+PG S V
Sbjct: 460 RSHGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/422 (38%), Positives = 258/422 (61%), Gaps = 12/422 (2%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N+++ Y+ +YKQL LP D FT+ F+ ++CA+L L
Sbjct: 75 LYNSIIRAYTHNSLYCDVIRIYKQL----LRKSFELP---DRFTFPFMFKSCASLGSCYL 127
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q+H + K G + HV AL++MY+ L D+ K+FDEM ER++++WN +++G +
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A+ LF M + +VSWT +I GYT + EA+ FR+M EP EI++++
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLIS 246
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
VLP+ Q G ++ + IH Y E+RGF V N LI+ Y+KCG I A +LF + E
Sbjct: 247 VLPSCAQLGSLELGKWIHLYAERRGFLK-QTGVCNALIEMYSKCGVISQAIQLFGQM--E 303
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
K+++SW+++ISG+A HG A+E F MQ+ +KPN +TFL +L+ACSH G+ +EGL
Sbjct: 304 GKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLR 363
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392
+FD M ++ ++ P I+HYGCLID+L RAG+LE+A + +P + D +W +LL +C
Sbjct: 364 YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK-PDSKIWGSLLSSCRT 422
Query: 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
GN+++ ++E+E G+YVL+ NI A +G++ D RLR+++ N K PG S
Sbjct: 423 PGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGS 482
Query: 453 LV 454
L+
Sbjct: 483 LI 484
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 260/423 (61%), Gaps = 15/423 (3%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N ++ +S ++ P+++ LLY+++ S +P +++T+ L++ C+ LS
Sbjct: 82 LWNLMIRGFSCSDEPERSLLLYQRM----LCSSAP----HNAYTFPSLLKACSNLSAFEE 133
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
TQ+HA I+K+G+++ VY +L+N Y G K + LFD +PE + V+WN +I G VK
Sbjct: 134 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A +LF +M +N +SWT +I GY + + + EAL LF +M + EP +++
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-VEPDNVSLAN 252
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC-LIDTYAKCGCIFSASKLFEDISV 271
L A Q G ++ + IH Y K VL C LID YAKCG + A ++F++I
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDS--VLGCVLIDMYAKCGEMEEALEVFKNI-- 308
Query: 272 ERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331
++K++ +WT++ISG+A HG G+EA+ F MQK+G+KPN +TF +VL ACS+ GLVEEG
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F M + + P I+HYGC++D+LGRAG L++A++ +P + + V+W LL AC
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 427
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ KVPGC
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
Query: 452 SLV 454
S +
Sbjct: 488 STI 490
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 145/325 (44%), Gaps = 23/325 (7%)
Query: 95 QLHAVISKVGFQSHVYVNTALVNMYVSL---GFLKDSSKLFDEMPERNLVTWNVMITGLV 151
Q+HA + K G Y T ++ +S FL + +FD + WN+MI G
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91
Query: 152 KWGELEFARSLFEEMPC----RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE 207
E E + L++ M C N ++ ++ + ++ E + ++ Y E
Sbjct: 92 CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGY-ENDV 150
Query: 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267
+ +++ + G+ K L+ D N +I Y K G + A LF
Sbjct: 151 YAVNSLINSYAVTGNFKLAHLLFDR-----IPEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 268 DISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV 327
++ KN +SWT++ISG+ M KEA++ F MQ ++P+ V+ + L+AC+ G +
Sbjct: 206 KMA--EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 263
Query: 328 EEGLNFFDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTL 386
E+G + + + + D GC LIDM + G +E+A + I + V W L
Sbjct: 264 EQG-KWIHSYLNKTRIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIKKK--SVQAWTAL 319
Query: 387 LGACSFHGNVEMGERVTRKILEMER 411
+ ++HG+ G K +EM++
Sbjct: 320 ISGYAYHGH---GREAISKFMEMQK 341
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 299 bits (765), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 261/441 (59%), Gaps = 17/441 (3%)
Query: 16 QIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSF 75
+ +H N+ LH NT++ SL + P + ++++ P D+F
Sbjct: 68 SVFTHQPCPNTYLH-----NTMIRALSLLDEPNAHSIAITVYRKLWALCAKP-----DTF 117
Query: 76 TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEM 135
T+ F+++ +S G Q+H + GF S V+V T L+ MY S G L D+ K+FDEM
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177
Query: 136 PERNLVTWNVMITGLVKWGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALAL 193
+++ WN ++ G K GE++ ARSL E MPC RN VSWT +I GY + R++EA+ +
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237
Query: 194 FRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253
F++M+ E EP E+T+LAVL A G ++ + I Y + RG + + N +ID Y
Sbjct: 238 FQRMLM-ENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMY 295
Query: 254 AKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT 313
AK G I A +FE V +N+V+WT+II+G A HG G EA+ F RM K G++PN VT
Sbjct: 296 AKSGNITKALDVFE--CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVT 353
Query: 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373
F+++L+ACSH G V+ G F+ M + + P+I+HYGC+ID+LGRAG+L +A++ +
Sbjct: 354 FIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSM 413
Query: 374 PSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDA 433
P + + +W +LL A + H ++E+GER +++++E G+Y+L+ N+ + +GR+ ++
Sbjct: 414 PFK-ANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472
Query: 434 ERLRRVMDERNAFKVPGCSLV 454
+R +M K+ G S +
Sbjct: 473 RMMRNMMKGIGVKKMAGESSI 493
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 121/276 (43%), Gaps = 39/276 (14%)
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNE---ALALFRKMVACEYTEPSEITI 210
G L +A S+F PC N +I + ++ N A+ ++RK+ A +P T
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWAL-CAKPDTFTF 119
Query: 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
VL + DV + IHG GF + + V+ LI Y CG + A K+F+++
Sbjct: 120 PFVLKIAVRVSDVWFGRQIHGQVVVFGFDS-SVHVVTGLIQMYFSCGGLGDARKMFDEML 178
Query: 271 VER-------------------------------KNLVSWTSIISGFAMHGMGKEAVENF 299
V+ +N VSWT +ISG+A G EA+E F
Sbjct: 179 VKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVF 238
Query: 300 GRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR 359
RM ++P+ VT L+VL+AC+ G +E G V+ + + +IDM +
Sbjct: 239 QRMLMENVEPDEVTLLAVLSACADLGSLELGERIC-SYVDHRGMNRAVSLNNAVIDMYAK 297
Query: 360 AGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN 395
+G + +A + +VV W T++ + HG+
Sbjct: 298 SGNITKALDVFECVNER--NVVTWTTIIAGLATHGH 331
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 260/453 (57%), Gaps = 42/453 (9%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
+FNTL+ YS ++ P + ++ ++ + P DSF+++F+I+
Sbjct: 72 MFNTLVRGYSESDEPHNSVAVFVEMMR----KGFVFP---DSFSFAFVIKAVENFRSLRT 124
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLV----------- 141
G Q+H K G +SH++V T L+ MY G ++ + K+FDEM + NLV
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184
Query: 142 --------------------TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGY 181
+WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF 241
NE+ FR++ + P+E+++ VL A Q+G + +++HG+ EK G++ +
Sbjct: 245 AHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS-W 302
Query: 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301
+ V N LID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+EAV F
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVRLFNE 361
Query: 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361
M G+ P+ ++F+S+L+ACSH GL+EEG ++F +M + P+I+HYGC++D+ GR+G
Sbjct: 362 MTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSG 421
Query: 362 RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421
+L++A +P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+
Sbjct: 422 KLQKAYDFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480
Query: 422 NILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
N A G++ D +R+ M + K SLV
Sbjct: 481 NAYATAGKWKDVASIRKSMIVQRIKKTTAWSLV 513
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 20/250 (8%)
Query: 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215
L +AR L P + + ++ GY+ + + ++A+F +M+ + P + V+
Sbjct: 55 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIK 114
Query: 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275
A+ +++ +H K G + + V LI Y CGC+ A K+F+++ + N
Sbjct: 115 AVENFRSLRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPN 171
Query: 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD 335
LV+W ++I+ A E F +M L N ++ +L G +E F
Sbjct: 172 LVAWNAVITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 336 KMVEECEV-----LPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390
+M +V + I H G + L++A + P+E++ V L AC
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS----PNEVSLTGV----LSAC 279
Query: 391 SFHGNVEMGE 400
S G+ E G+
Sbjct: 280 SQSGSFEFGK 289
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 250/423 (59%), Gaps = 17/423 (4%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
LF ++ S+ +AFLLY QL S + P + FT+S L+++C+T S
Sbjct: 97 LFTAAINTASINGLKDQAFLLYVQLLS------SEINP--NEFTFSSLLKSCSTKS---- 144
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G +H + K G YV T LV++Y G + + K+FD MPER+LV+ MIT K
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 204
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G +E AR+LF+ M R++VSW +IDGY + N+AL LF+K++A +P EIT++A
Sbjct: 205 QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVA 264
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
L A Q G +++ + IH + K +++V LID Y+KCG + A +F D
Sbjct: 265 ALSACSQIGALETGRWIHVF-VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFND--TP 321
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGL 331
RK++V+W ++I+G+AMHG ++A+ F MQ + GL+P +TF+ L AC+H GLV EG+
Sbjct: 322 RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGI 381
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F+ M +E + P I+HYGCL+ +LGRAG+L++A +T + + D V+W ++LG+C
Sbjct: 382 RIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD-ADSVLWSSVLGSCK 440
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
HG+ +G+ + ++ + G YVL+ NI A VG + ++R +M E+ K PG
Sbjct: 441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500
Query: 452 SLV 454
S +
Sbjct: 501 STI 503
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 244/396 (61%), Gaps = 19/396 (4%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
+ FT+ +++ CA G Q+H + K GF +V + LV MYV GF+KD+ LF
Sbjct: 127 NRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLF 186
Query: 133 DE---------MPER-----NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGII 178
+ M +R +V WNVMI G ++ G+ + AR LF++M R+VVSW +I
Sbjct: 187 YKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246
Query: 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238
GY+ +A+ +FR+M + P+ +T+++VLPAI + G ++ + +H Y E G
Sbjct: 247 SGYSLNGFFKDAVEVFREMKKGD-IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI 305
Query: 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 298
D+ + + LID Y+KCG I A +FE + R+N+++W+++I+GFA+HG +A++
Sbjct: 306 RIDDV-LGSALIDMYSKCGIIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDC 362
Query: 299 FGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358
F +M++ G++P+ V ++++L ACSHGGLVEEG +F +MV + P I+HYGC++D+LG
Sbjct: 363 FCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 422
Query: 359 RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418
R+G L++AE+ L +P + D V+W+ LLGAC GNVEMG+RV +++M G YV
Sbjct: 423 RSGLLDEAEEFILNMPIKPDD-VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYV 481
Query: 419 LMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+ N+ A G + + +R M E++ K PGCSL+
Sbjct: 482 ALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLI 517
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 135/288 (46%), Gaps = 51/288 (17%)
Query: 155 ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNE--ALALFRKMVACEYTEPSEITILA 212
+L++A +F +MP RN SW II G++ + A+ LF +M++ E+ EP+ T +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTA------------------FDIRVL-------- 246
VL A + G ++ + IHG K GF D RVL
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 247 ------------------NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAM 288
N +ID Y + G +A LF+ + ++++VSW ++ISG+++
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFD--KMRQRSVVSWNTMISGYSL 251
Query: 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIK 348
+G K+AVE F M+K ++PN VT +SVL A S G +E G + E+ + D
Sbjct: 252 NGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDV 310
Query: 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNV 396
LIDM + G +E+A +P E +V+ W ++ + HG
Sbjct: 311 LGSALIDMYSKCGIIEKAIHVFERLPRE--NVITWSAMINGFAIHGQA 356
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 254/460 (55%), Gaps = 23/460 (5%)
Query: 12 NITTQIHSHLL-----TTNSLLHHSQLFNTLLHFYSLAESPQKA-FLLYKQLQQIYTHSH 65
N Q+H+H L T LL L L++ L + Q + LY +L Q Y H
Sbjct: 2 NGIKQLHAHCLRTGVDETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHH 61
Query: 66 SPLPPL-------FDSF-----TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT 113
P + FD T++F+ A+ S LH+ + GF+S + T
Sbjct: 62 QPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCT 121
Query: 114 ALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVS 173
L+ Y LG L + ++FDEM +R++ WN MITG + G+++ A LF+ MP +NV S
Sbjct: 122 TLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTS 181
Query: 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYG 233
WT +I G+++ +EAL +F M + +P+ IT+++VLPA G+++ + + GY
Sbjct: 182 WTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYA 241
Query: 234 EKRGFTAFD-IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG 292
+ GF FD I V N I+ Y+KCG I A +LFE++ +R NL SW S+I A HG
Sbjct: 242 RENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQR-NLCSWNSMIGSLATHGKH 298
Query: 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGC 352
EA+ F +M + G KP+ VTF+ +L AC HGG+V +G F M E ++ P ++HYGC
Sbjct: 299 DEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGC 358
Query: 353 LIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412
+ID+LGR G+L++A +P + D VVW TLLGACSFHGNVE+ E + + ++E
Sbjct: 359 MIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPT 417
Query: 413 YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
G+ V+M NI A ++ R+R++M + K G S
Sbjct: 418 NPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 233/389 (59%), Gaps = 8/389 (2%)
Query: 70 PLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDS 128
P + F Y ++++ LS +H + K GF +V V TAL++ Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 129 SKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188
+LFDEM ERN+V+W M++G + G++ A +LFE+MP R+V SW I+ T+
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248
EA++LFR+M+ P+E+T++ VL A Q G ++ + IH + +R ++ D+ V N
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 249 LIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-- 306
L+D Y KCG + AS +F+ S +K+L +W S+I+ FA+HG +EA+ F M K+
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 307 -LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
+KP+ +TF+ +LNAC+HGGLV +G +FD M + P I+HYGCLID+LGRAGR ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
A + + + D +W +LL AC HG++++ E + ++ + GG +M N+
Sbjct: 419 ALEVMSTMKMK-ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477
Query: 426 GVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+G + +A R R+++ +NA+K PG S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSRI 506
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 12/254 (4%)
Query: 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMN--RSNEALALFRKMVACEYTEPSEITILAV 213
L +AR +F+ N + ++ Y+ ++ A + FR MV P+ V
Sbjct: 73 LSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLV 132
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA-KCGCIFSASKLFEDISVE 272
L + S L+H + K GF + + V L+ +YA I A +LF+++S
Sbjct: 133 LKSTPYLSSAFSTPLVHTHLFKSGFHLY-VVVQTALLHSYASSVSHITLARQLFDEMS-- 189
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
+N+VSWT+++SG+A G AV F M + + ++ ++L AC+ GL E ++
Sbjct: 190 ERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVP----SWNAILAACTQNGLFLEAVS 245
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT-ALGIPSEI-TDVVVWRTLLGAC 390
F +M+ E + P+ C++ + G L+ A+ A ++ +DV V +L+
Sbjct: 246 LFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLY 305
Query: 391 SFHGNVEMGERVTR 404
GN+E V +
Sbjct: 306 GKCGNLEEASSVFK 319
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 13/421 (3%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N L++ Y +KA +YK ++ S P D T L+ +C+ L N G
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLME-----SEGVKP---DDVTMIGLVSSCSMLGDLNRG 276
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
+ + + + G + + + AL++M+ G + ++ ++FD + +R +V+W MI+G +
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G L+ +R LF++M ++VV W +I G + R +ALALF++M T+P EIT++
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN-TKPDEITMIHC 395
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
L A Q G + IH Y EK + ++ + L+D YAKCG I A +F I +
Sbjct: 396 LSACSQLGALDVGIWIHRYIEKYSLS-LNVALGTSLVDMYAKCGNISEALSVFHGI--QT 452
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+++ G ++
Sbjct: 453 RNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDY 512
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F +M + P +KHY ++D+LGRAG LE+A++ +P E D VW LL C H
Sbjct: 513 FSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME-ADAAVWGALLFGCRMH 571
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
GNVE+GE+ +K+LE++ G YVL+ + + DA+R RR+M+ER K+PGCS
Sbjct: 572 GNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSS 631
Query: 454 V 454
+
Sbjct: 632 I 632
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 186/372 (50%), Gaps = 30/372 (8%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N + +S +E+P+++FLLYKQ+ + H D FTY L + CA L +LG
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLR-----HGCCESRPDHFTYPVLFKVCADLRLSSLG 175
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
+ + K+ + +V+ A ++M+ S G ++++ K+FDE P R+LV+WN +I G K
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 154 GELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209
GE E A +++ M V V+ G++ + + N + EY + + +
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFY------EYVKENGLR 289
Query: 210 IL-----AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASK 264
+ A++ + GD+ + I EKR ++ +I YA+CG + + K
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSW-----TTMISGYARCGLLDVSRK 344
Query: 265 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324
LF+D+ E K++V W ++I G G++A+ F MQ KP+ +T + L+ACS
Sbjct: 345 LFDDM--EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQL 402
Query: 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR 384
G ++ G+ + + +E+ + ++ L+DM + G + +A GI + + + +
Sbjct: 403 GALDVGI-WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGI--QTRNSLTYT 459
Query: 385 TLLGACSFHGNV 396
++G + HG+
Sbjct: 460 AIIGGLALHGDA 471
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 271 VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL---KPNRVTFLSVLNACSHGGLV 327
+E N+ SW I GF+ KE+ + +M + G +P+ T+ + C+ L
Sbjct: 113 IENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLS 172
Query: 328 EEGLNFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTL 386
G +++ E++ + + I M G +E A K P + D+V W L
Sbjct: 173 SLGHMILGHVLKLRLELVSHV--HNASIHMFASCGDMENARKVFDESP--VRDLVSWNCL 228
Query: 387 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435
+ G E V K++E E G D V M +++ GD R
Sbjct: 229 INGYKKIGEAEKAIYVY-KLMESE-GVKPDDVTMIGLVSSCSMLGDLNR 275
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 250/456 (54%), Gaps = 50/456 (10%)
Query: 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGT 94
N +L + + P+K LY ++++ SP D +T++F+++ C+ L + G
Sbjct: 81 NHVLRGSAQSMKPEKTVSLYTEMEK---RGVSP-----DRYTFTFVLKACSKLEWRSNGF 132
Query: 95 QLHAVISKVGFQSHVYVNTALV-------------------------------NMYVSLG 123
H + + GF + YV AL+ + Y G
Sbjct: 133 AFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRG 192
Query: 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTR 183
+ ++ +LFDEMP ++ V WNVMITG +K E++ AR LF+ ++VV+W +I GY
Sbjct: 193 KIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVN 252
Query: 184 MNRSNEALALFRKMV-ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD 242
EAL +F++M A E+ P +TIL++L A GD+++ + +H Y + +
Sbjct: 253 CGYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 310
Query: 243 IRV----LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 298
I V N LID YAKCG I A ++F V+ ++L +W ++I G A+H + ++E
Sbjct: 311 IYVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEM 367
Query: 299 FGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358
F MQ++ + PN VTF+ V+ ACSH G V+EG +F M + + P+IKHYGC++DMLG
Sbjct: 368 FEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLG 427
Query: 359 RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418
RAG+LE+A + E + +VWRTLLGAC +GNVE+G+ K+L M + GDYV
Sbjct: 428 RAGQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 419 LMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
L+ NI A G++ +++R++ D+ K G SL+
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 162/349 (46%), Gaps = 44/349 (12%)
Query: 95 QLHAVISKVGFQSHVYVNTALV-NMYVSL-GFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
Q+HA + G S++ V L+ + +S+ G LK + KLFDE+P+ ++ N ++ G +
Sbjct: 30 QIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQ 89
Query: 153 WGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNRSNEALALFRKMVA-----CEYT 203
+ E SL+ EM R V ++T ++ +++ + A K+V EY
Sbjct: 90 SMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYV 149
Query: 204 EPSEITI------LAVLPAIWQNG----DVKSCQLIHGYGEKRGFTAFDIRVL------- 246
+ + I L + ++ + V + GY KRG +R+
Sbjct: 150 KNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYA-KRGKIDEAMRLFDEMPYKD 208
Query: 247 ----NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRM 302
N +I KC + SA +LF+ + K++V+W ++ISG+ G KEA+ F M
Sbjct: 209 QVAWNVMITGCLKCKEMDSARELFDRFT--EKDVVTWNAMISGYVNCGYPKEALGIFKEM 266
Query: 303 QKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI----KHYGCLIDMLG 358
+ G P+ VT LS+L+AC+ G +E G ++E V I + LIDM
Sbjct: 267 RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYA 326
Query: 359 RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH---GNVEMGERVTR 404
+ G +++A + G+ D+ W TL+ + H G++EM E + R
Sbjct: 327 KCGSIDRAIEVFRGVKDR--DLSTWNTLIVGLALHHAEGSIEMFEEMQR 373
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 246/442 (55%), Gaps = 16/442 (3%)
Query: 18 HSHLLTTNSLLHHSQ---LF--NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLF 72
H +L N +L S+ LF N+++ + + P+K+F Y+++ S + L P
Sbjct: 53 HKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRI----LSSGNDLKP-- 106
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
D++T +FL++ C L G Q+H + + GF + +V T L+++Y LG L K+F
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
+ +P + V M+T + G++ FAR LFE MP R+ ++W +I GY ++ S EAL
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252
+F M E + + + +++VL A Q G + + H Y E R +R+ L+D
Sbjct: 227 VFHLM-QLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIE-RNKIKITVRLATTLVDL 284
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV 312
YAKCG + A ++F +E KN+ +W+S ++G AM+G G++ +E F M++ G+ PN V
Sbjct: 285 YAKCGDMEKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAV 342
Query: 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372
TF+SVL CS G V+EG FD M E + P ++HYGCL+D+ RAGRLE A
Sbjct: 343 TFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQ 402
Query: 373 IPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432
+P + VW +LL A + N+E+G ++K+LE+E G YVL+ NI A + +
Sbjct: 403 MPMK-PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDN 461
Query: 433 AERLRRVMDERNAFKVPGCSLV 454
+R+ M + K PGCS++
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVM 483
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 245/423 (57%), Gaps = 44/423 (10%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
++NTL+ Y+ + AF LY++++ + P D+ TY FLI+ T++ L
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMR-----VSGLVEP--DTHTYPFLIKAVTTMADVRL 139
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G +H+V+ + GF S +YV +L+++Y + G + + K+FD+MPE++LV WN +I G +
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+ E A +L+ EM + + +P TI++
Sbjct: 200 NGKPEEALALYTEMNSKGI--------------------------------KPDGFTIVS 227
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
+L A + G + + +H Y K G T ++ N L+D YA+CG + A LF+++
Sbjct: 228 LLSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV-- 284
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGL 331
KN VSWTS+I G A++G GKEA+E F M+ GL P +TF+ +L ACSH G+V+EG
Sbjct: 285 DKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGF 344
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
+F +M EE ++ P I+H+GC++D+L RAG++++A + +P + +VV+WRTLLGAC+
Sbjct: 345 EYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACT 403
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
HG+ ++ E +IL++E + GDYVL+ N+ A R+ D +++R+ M KVPG
Sbjct: 404 VHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGH 463
Query: 452 SLV 454
SLV
Sbjct: 464 SLV 466
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 13/243 (5%)
Query: 156 LEFARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
+ +A +F E P NV W +I GY + S A +L+R+M EP T +
Sbjct: 69 MSYAHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFL 127
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
+ A+ DV+ + IH + GF + I V N L+ YA CG + SA K+F+ +
Sbjct: 128 IKAVTTMADVRLGETIHSVVIRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFDKMP--E 184
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
K+LV+W S+I+GFA +G +EA+ + M G+KP+ T +S+L+AC+ G + G
Sbjct: 185 KDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD--VVVWRTLLGACS 391
M+ + + ++ L+D+ R GR+E+A KT E+ D V W +L+ +
Sbjct: 245 HVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEA-KTLF---DEMVDKNSVSWTSLIVGLA 299
Query: 392 FHG 394
+G
Sbjct: 300 VNG 302
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 236/422 (55%), Gaps = 44/422 (10%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
+FN++ YS +P + F L+ ++ + LP D++T+ L++ CA
Sbjct: 96 IFNSMARGYSRFTNPLEVFSLFVEILE-----DGILP---DNYTFPSLLKACAVAKALEE 147
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G QLH + K+G +VYV L+NMY + + +FD + E
Sbjct: 148 GRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE--------------- 192
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
PC VV + +I GY R NR NEAL+LFR+M +Y +P+EIT+L+
Sbjct: 193 --------------PC--VVCYNAMITGYARRNRPNEALSLFREMQG-KYLKPNEITLLS 235
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
VL + G + + IH Y +K F + ++V LID +AKCG + A +FE +
Sbjct: 236 VLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KMR 292
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
K+ +W+++I +A HG ++++ F RM+ ++P+ +TFL +LNACSH G VEEG
Sbjct: 293 YKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRK 352
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392
+F +MV + ++P IKHYG ++D+L RAG LE A + +P T ++WR LL ACS
Sbjct: 353 YFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTP-MLWRILLAACSS 411
Query: 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
H N+++ E+V+ +I E++ +GGDYV++ N+ A ++ + LR+VM +R A KVPGCS
Sbjct: 412 HNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCS 471
Query: 453 LV 454
+
Sbjct: 472 SI 473
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 17/247 (6%)
Query: 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRK-----MVACEYTEPSEITI 210
+ +AR LFE M ++V + + GY+R E +LF + ++ YT PS +
Sbjct: 79 MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138
Query: 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
AV A+ + + +H K G ++ V LI+ Y +C + SA +F+ I
Sbjct: 139 CAVAKALEEG------RQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARCVFDRI- 190
Query: 271 VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330
VE +V + ++I+G+A EA+ F MQ LKPN +T LSVL++C+ G ++ G
Sbjct: 191 VE-PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
Query: 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390
+ K ++ +K LIDM + G L+ A ++ D W ++ A
Sbjct: 250 -KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA--VSIFEKMRYKDTQAWSAMIVAY 306
Query: 391 SFHGNVE 397
+ HG E
Sbjct: 307 ANHGKAE 313
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 246/422 (58%), Gaps = 13/422 (3%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
+FN L+ +S P KAF Y Q+ + S + P D+ T+ FLI+ + + +
Sbjct: 84 VFNLLIRCFSTGAEPSKAFGFYTQMLK------SRIWP--DNITFPFLIKASSEMECVLV 135
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q H+ I + GFQ+ VYV +LV+MY + GF+ + ++F +M R++V+W M+ G K
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCK 195
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G +E AR +F+EMP RN+ +W+ +I+GY + N +A+ LF M E +E +++
Sbjct: 196 CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKR-EGVVANETVMVS 254
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
V+ + G ++ + + Y K T ++ + L+D + +CG I A +FE +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTV-NLILGTALVDMFWRCGDIEKAIHVFEGLP-- 311
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
+ +SW+SII G A+HG +A+ F +M +G P VTF +VL+ACSHGGLVE+GL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392
++ M ++ + P ++HYGC++DMLGRAG+L +AE L + + + + LLGAC
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVK-PNAPILGALLGACKI 430
Query: 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
+ N E+ ERV +++++ + G YVL+ NI A G++ E LR +M E+ K PG S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 453 LV 454
L+
Sbjct: 491 LI 492
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 236/422 (55%), Gaps = 22/422 (5%)
Query: 34 FNTLLHFYSLAESPQ---KAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHP 90
FNT++ +L E K F + + + + PP D T+ F+ + CA +
Sbjct: 82 FNTIIRICTLHEPSSLSSKRFFVEMRRRSV--------PP--DFHTFPFVFKACAAKKNG 131
Query: 91 NLG--TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMIT 148
+L LH + G S ++ L+ +Y + + + +LFDE P+R++VT+NV+I
Sbjct: 132 DLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLID 191
Query: 149 GLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEI 208
GLVK E+ AR LF+ MP R++VSW +I GY +MN EA+ LF +MVA +P +
Sbjct: 192 GLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGL-KPDNV 250
Query: 209 TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268
I++ L A Q+GD + + IH Y KR D + L+D YAKCG I +A ++FE
Sbjct: 251 AIVSTLSACAQSGDWQKGKAIHDY-TKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFEL 309
Query: 269 ISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE 328
S K L +W ++I+G AMHG G+ V+ F +M G+KP+ VTF+SVL CSH GLV+
Sbjct: 310 CS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVD 367
Query: 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVWRT 385
E N FD+M +V ++KHYGC+ D+LGRAG +E+A + +P + + ++ W
Sbjct: 368 EARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSG 427
Query: 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445
LLG C HGN+E+ E+ ++ + GG Y +M + A R+ + ++R ++D
Sbjct: 428 LLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDKK 487
Query: 446 FK 447
K
Sbjct: 488 VK 489
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/488 (31%), Positives = 250/488 (51%), Gaps = 77/488 (15%)
Query: 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPN 91
L N+L+ ++ P +AF ++ ++Q+ + D+FTY FL++ C+ S
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFA--------DNFTYPFLLKACSGQSWLP 134
Query: 92 LGTQLHAVISKVGFQSHVYVNTALVNMY-------------------------------- 119
+ +H I K+G S +YV AL++ Y
Sbjct: 135 VVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGG 194
Query: 120 -VSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGII 178
V G L+D+ +LFDEMP+R+L++WN M+ G + E+ A LFE+MP RN VSW+ ++
Sbjct: 195 LVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMV 254
Query: 179 DGYTRMNRSNEALALFRKM------------VACEYTEP--------------------S 206
GY++ A +F KM + Y E
Sbjct: 255 MGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFD 314
Query: 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266
++++L A ++G + IH KR + VLN L+D YAKCG + A +F
Sbjct: 315 AAAVISILAACTESGLLSLGMRIHSI-LKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVF 373
Query: 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326
DI +K+LVSW +++ G +HG GKEA+E F RM++ G++P++VTF++VL +C+H GL
Sbjct: 374 NDIP--KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGL 431
Query: 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTL 386
++EG+++F M + +++P ++HYGCL+D+LGR GRL++A K +P E +VV+W L
Sbjct: 432 IDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPME-PNVVIWGAL 490
Query: 387 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446
LGAC H V++ + V +++++ G+Y L+ NI A + +R M
Sbjct: 491 LGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVE 550
Query: 447 KVPGCSLV 454
K G S V
Sbjct: 551 KPSGASSV 558
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 16/208 (7%)
Query: 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301
D+ + LI + C A ++F V+ N+ S+I A + +A F
Sbjct: 50 DLHIAPKLISALSLCRQTNLAVRVFN--QVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSE 107
Query: 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361
MQ+ GL + T+ +L ACS G + +E+ + DI LID R G
Sbjct: 108 MQRFGLFADNFTYPFLLKACS-GQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCG 166
Query: 362 RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGE-RVTRKIL-EMERGYGGDYVL 419
L + L D V W ++LG G V+ GE R R++ EM + D +
Sbjct: 167 GLGVRDAMKLFEKMSERDTVSWNSMLG-----GLVKAGELRDARRLFDEMPQ---RDLIS 218
Query: 420 MYNILAGVGR---FGDAERLRRVMDERN 444
+L G R A L M ERN
Sbjct: 219 WNTMLDGYARCREMSKAFELFEKMPERN 246
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 224/381 (58%), Gaps = 5/381 (1%)
Query: 74 SFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 133
S T ++ C+ + +L ++H +S+ + + + ALVN Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 134 EMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALAL 193
M R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT +IDGY R NE+L +
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 194 FRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253
FR+M + P E T+++VL A G ++ + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMY 413
Query: 254 AKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT 313
KCGC A K+F D+ ++++ +WT+++ G A +G G+EA++ F +MQ + ++P+ +T
Sbjct: 414 FKCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373
+L VL+AC+H G+V++ FF KM + + P + HYGC++DMLGRAG +++A + +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 374 PSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDA 433
P + +VW LLGA H + M E +KILE+E G Y L+ NI AG R+ D
Sbjct: 532 PMN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDL 590
Query: 434 ERLRRVMDERNAFKVPGCSLV 454
+RR + + K PG SL+
Sbjct: 591 REVRRKIVDVAIKKTPGFSLI 611
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 148/330 (44%), Gaps = 70/330 (21%)
Query: 73 DSFTYSFLI----RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS 128
DS T+ FL+ R L+ G +LH + K G S++YV ALV MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 129 SKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188
+FD + ++ +WN+MI+G + E E + L EM RN+VS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME-RNLVS--------------- 233
Query: 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248
P+ +T+L VL A + D C+ +H Y + T +R+ N
Sbjct: 234 ----------------PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECK-TEPSLRLENA 276
Query: 249 LIDTYAKCGCIFSASKLFEDIS--------------VERKNL---------------VSW 279
L++ YA CG + A ++F + VER NL +SW
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336
Query: 280 TSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339
T +I G+ G E++E F MQ G+ P+ T +SVL AC+H G +E G + ++
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYID 395
Query: 340 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369
+ ++ D+ LIDM + G E+A+K
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKV 425
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
D FT ++ CA L +G + I K ++ V V AL++MY G + + K+F
Sbjct: 367 DEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVF 426
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNRSN 188
+M +R+ TW M+ GL G+ + A +F +M ++ +++ G++ +
Sbjct: 427 HDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVD 486
Query: 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224
+A F KM + EPS + ++ + + G VK
Sbjct: 487 QARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVK 522
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 258 bits (660), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 241/424 (56%), Gaps = 18/424 (4%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQ-QIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
+N++++ + SP KA L+K+++ + SH T ++ CA + +
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASH---------VTMVGVLSACAKIRNLEF 250
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q+ + I + ++ + A+++MY G ++D+ +LFD M E++ VTW M+ G
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
+ E AR + MP +++V+W +I Y + + NEAL +F ++ + + ++IT+++
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
L A Q G ++ + IH Y +K G + V + LI Y+KCG + + ++F SVE
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIR-MNFHVTSALIHMYSKCGDLEKSREVFN--SVE 427
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
++++ W+++I G AMHG G EAV+ F +MQ+ +KPN VTF +V ACSH GLV+E +
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK--TALGIPSEITDVVVWRTLLGAC 390
F +M ++P+ KHY C++D+LGR+G LE+A K A+ IP + VW LLGAC
Sbjct: 488 LFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS---VWGALLGAC 544
Query: 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPG 450
H N+ + E ++LE+E G +VL+ NI A +G++ + LR+ M K PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 451 CSLV 454
CS +
Sbjct: 605 CSSI 608
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 179/391 (45%), Gaps = 73/391 (18%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+NTL+ Y A P ++ L + S S P + +T+ FLI+ A +S +LG
Sbjct: 98 WNTLIRAY--ASGPDPVLSIWAFLDMV---SESQCYP--NKYTFPFLIKAAAEVSSLSLG 150
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
LH + K S V+V +L++ Y S G L + K+F + E+++V+WN MI G V+
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 210
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G ++AL LF+KM + E + S +T++ V
Sbjct: 211 GS-------------------------------PDKALELFKKMES-EDVKASHVTMVGV 238
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDI---- 269
L A + +++ + + Y E+ ++ + N ++D Y KCG I A +LF+ +
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297
Query: 270 -------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQ- 303
S+ +K++V+W ++IS + +G EA+ F +Q
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357
Query: 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363
+ +K N++T +S L+AC+ G +E G + +++ + + LI M + G L
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDL 416
Query: 364 EQAEKTALGIPSEITDVVVWRTLLGACSFHG 394
E++ + + E DV VW ++G + HG
Sbjct: 417 EKSREVFNSV--EKRDVFVWSAMIGGLAMHG 445
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 6/256 (2%)
Query: 147 ITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS 206
+ L + LE+AR +F+E+P N +W +I Y ++ F MV+ P+
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266
+ T ++ A + + Q +HG K + D+ V N LI Y CG + SA K+F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF 189
Query: 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326
+++ K++VSW S+I+GF G +A+E F +M+ +K + VT + VL+AC+
Sbjct: 190 --TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTL 386
+E G +EE V ++ ++DM + G +E A++ L E D V W T+
Sbjct: 248 LEFGRQVCS-YIEENRVNVNLTLANAMLDMYTKCGSIEDAKR--LFDAMEEKDNVTWTTM 304
Query: 387 LGACSFHGNVEMGERV 402
L + + E V
Sbjct: 305 LDGYAISEDYEAAREV 320
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 223/384 (58%), Gaps = 9/384 (2%)
Query: 75 FTYSFLIRTCATLSHPN--LGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKL 131
T+ L+ C + + LG LH K+G ++HV V TA++ MY G K + +
Sbjct: 72 ITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLV 131
Query: 132 FDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEAL 191
FD M ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +I+G+ + EAL
Sbjct: 132 FDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEAL 191
Query: 192 ALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251
FR+M +P + I+A L A G + +H Y + F ++RV N LID
Sbjct: 192 LWFREM-QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKN-NVRVSNSLID 249
Query: 252 TYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311
Y +CGC+ A ++F ++ E++ +VSW S+I GFA +G E++ F +MQ+ G KP+
Sbjct: 250 LYCRCGCVEFARQVFYNM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDA 307
Query: 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTAL 371
VTF L ACSH GLVEEGL +F M + + P I+HYGCL+D+ RAGRLE A K
Sbjct: 308 VTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQ 367
Query: 372 GIPSEITDVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRF 430
+P + +VV+ +LL ACS HG N+ + ER+ + + ++ +YV++ N+ A G++
Sbjct: 368 SMPMKPNEVVI-GSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKW 426
Query: 431 GDAERLRRVMDERNAFKVPGCSLV 454
A ++RR M K PG S +
Sbjct: 427 EGASKMRRKMKGLGLKKQPGFSSI 450
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336
VSWTS I+ +G EA + F M G++PN +TF+++L+ C G G
Sbjct: 37 VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC---GDFTSGSEALGD 93
Query: 337 MVE--ECEVLPDIKHY---GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
++ C++ D H +I M + GR ++A + E + V W T++
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM--EDKNSVTWNTMIDGYM 151
Query: 392 FHGNVEMGERVTRKILEME 410
G V+ ++ K+ E +
Sbjct: 152 RSGQVDNAAKMFDKMPERD 170
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 247/452 (54%), Gaps = 22/452 (4%)
Query: 4 LQNSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTH 63
L NS N ++ SH+ N L+ FN ++ YSL P ++ + ++
Sbjct: 49 LSNSDYAN----RVFSHIQNPNVLV-----FNAMIKCYSLVGPPLESLSFFSSMKSRGIW 99
Query: 64 SHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 123
+ D +TY+ L+++C++LS G +H + + GF + +V +Y S G
Sbjct: 100 A--------DEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGG 151
Query: 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTR 183
+ D+ K+FDEM ERN+V WN+MI G G++E LF++M R++VSW +I ++
Sbjct: 152 RMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSK 211
Query: 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243
R EAL LF +M+ + +P E T++ VLP G + + + IH E G I
Sbjct: 212 CGRDREALELFCEMIDQGF-DPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFI 270
Query: 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQ 303
V N L+D Y K G + +A+ +F + +R+N+VSW ++ISG A++G G+ ++ F M
Sbjct: 271 TVGNALVDFYCKSGDLEAATAIFRKM--QRRNVVSWNTLISGSAVNGKGEFGIDLFDAMI 328
Query: 304 KVG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362
+ G + PN TFL VL CS+ G VE G F M+E ++ +HYG ++D++ R+GR
Sbjct: 329 EEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGR 388
Query: 363 LEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422
+ +A K +P + +W +LL AC HG+V++ E +++++E G G+YVL+ N
Sbjct: 389 ITEAFKFLKNMPVN-ANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSN 447
Query: 423 ILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+ A GR+ D E++R +M + K G S +
Sbjct: 448 LYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 139/421 (33%), Positives = 232/421 (55%), Gaps = 12/421 (2%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+NT++ Y+ + +A YK+ ++ F+ F+++ L+ C L
Sbjct: 147 WNTMVIGYAQDGNLHEALWFYKEFRRSGIK--------FNEFSFAGLLTACVKSRQLQLN 198
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
Q H + GF S+V ++ ++++ Y G ++ + + FDEM +++ W +I+G K
Sbjct: 199 RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G++E A LF EMP +N VSWT +I GY R N AL LFRKM+A +P + T +
Sbjct: 259 GDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALG-VKPEQFTFSSC 317
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
L A ++ + IHGY + I V++ LID Y+K G + ++ ++F I ++
Sbjct: 318 LCASASIASLRHGKEIHGYMIRTNVRPNAI-VISSLIDMYSKSGSLEASERVFR-ICDDK 375
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+ V W ++IS A HG+G +A+ M K ++PNR T + +LNACSH GLVEEGL +
Sbjct: 376 HDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRW 435
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F+ M + ++PD +HY CLID+LGRAG ++ + +P E D +W +LG C H
Sbjct: 436 FESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFE-PDKHIWNAILGVCRIH 494
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
GN E+G++ ++++++ Y+L+ +I A G++ E+LR VM +R K S
Sbjct: 495 GNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSW 554
Query: 454 V 454
+
Sbjct: 555 I 555
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 176/360 (48%), Gaps = 37/360 (10%)
Query: 80 LIRTCATLSHPNLGTQLHAVISKVGFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDEMPER 138
L++ C G +H + GF+ + ++ L+ MY+ G D+ K+FD+M R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 139 NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRK-- 196
NL +WN M++G VK G L AR +F+ MP R+VVSW ++ GY + +EAL +++
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 197 --------------MVACEYTEPSEITILA---VLPAIWQNGDVKSCQLIHGYGE----- 234
+ AC + ++ A VL A + + V SC +I Y +
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 235 --KRGF---TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMH 289
KR F T DI + LI YAK G + +A KLF + KN VSWT++I+G+
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF--CEMPEKNPVSWTALIAGYVRQ 289
Query: 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349
G G A++ F +M +G+KP + TF S L A + + G M+ V P+
Sbjct: 290 GSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMI-RTNVRPNAIV 348
Query: 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409
LIDM ++G LE +E+ I + D V W T++ A + HG +G + R + +M
Sbjct: 349 ISSLIDMYSKSGSLEASERV-FRICDDKHDCVFWNTMISALAQHG---LGHKALRMLDDM 404
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 226/390 (57%), Gaps = 11/390 (2%)
Query: 65 HSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 124
H+ + P D++ + +++ C + ++HA + K+GF S V ++ +Y G
Sbjct: 120 HNSVLP--DNYVITSVLKACDL----KVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGE 173
Query: 125 LKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRM 184
L ++ K+FDEMP+R+ V VMI + G ++ A LF+++ ++ V WT +IDG R
Sbjct: 174 LVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244
N+AL LFR+M E +E T + VL A G ++ + +H + E + +
Sbjct: 234 KEMNKALELFREM-QMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF- 291
Query: 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304
V N LI+ Y++CG I A ++F + K+++S+ ++ISG AMHG EA+ F M
Sbjct: 292 VGNALINMYSRCGDINEARRVFR--VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVN 349
Query: 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364
G +PN+VT +++LNACSHGGL++ GL F+ M V P I+HYGC++D+LGR GRLE
Sbjct: 350 RGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLE 409
Query: 365 QAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424
+A + IP E D ++ TLL AC HGN+E+GE++ +++ E E G YVL+ N+
Sbjct: 410 EAYRFIENIPIE-PDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLY 468
Query: 425 AGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
A G++ ++ +R M + K PGCS +
Sbjct: 469 ASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 209 TILAVLPAIWQNGDVKS--CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266
T+++VL + V S ++I + ++ F F++ + +D+ +FS
Sbjct: 31 TLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSY---- 86
Query: 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322
V N+ +T++I GF G + V + RM + P+ SVL AC
Sbjct: 87 ----VSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD 138
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 234/414 (56%), Gaps = 14/414 (3%)
Query: 46 SPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF 105
SPQ+ + L+ + H SP D T+ FL+ + H LG + HA I G
Sbjct: 40 SPQRHSPISVYLR-MRNHRVSP-----DFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGL 93
Query: 106 QSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEE 165
+V T+L+NMY S G L+ + ++FD+ ++L WN ++ K G ++ AR LF+E
Sbjct: 94 DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDE 153
Query: 166 MPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE----YTEPSEITILAVLPAIWQNG 221
MP RNV+SW+ +I+GY + EAL LFR+M + + P+E T+ VL A + G
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTS 281
++ + +H Y +K DI + LID YAKCG + A ++F + +K++ ++++
Sbjct: 214 ALEQGKWVHAYIDKY-HVEIDIVLGTALIDMYAKCGSLERAKRVFNALG-SKKDVKAYSA 271
Query: 282 IISGFAMHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340
+I AM+G+ E + F M + PN VTF+ +L AC H GL+ EG ++F M+EE
Sbjct: 272 MICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEE 331
Query: 341 CEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGE 400
+ P I+HYGC++D+ GR+G +++AE +P E DV++W +LL G+++ E
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPME-PDVLIWGSLLSGSRMLGDIKTCE 390
Query: 401 RVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
++++E++ G YVL+ N+ A GR+ + + +R M+ + KVPGCS V
Sbjct: 391 GALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYV 444
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 241/421 (57%), Gaps = 11/421 (2%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N ++ +S + +P+K+ +Y Q+ + LP D TY FL+++ + LS+ LG
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRF-----GLLP---DHMTYPFLMKSSSRLSNRKLG 127
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
LH + K G + +++ L++MY S + KLFDEMP +NLVTWN ++ K
Sbjct: 128 GSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKS 187
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G++ AR +F+EM R+VV+W+ +IDGY + N+AL +F +M+ ++ +E+T+++V
Sbjct: 188 GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSV 247
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
+ A G + + +H Y + + LID YAKCG I A +F SV+
Sbjct: 248 ICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKE 306
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+ + W +II G A HG +E+++ F +M++ + P+ +TFL +L ACSHGGLV+E +F
Sbjct: 307 TDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHF 366
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F K ++E P +HY C++D+L RAG ++ A +P + T ++ LL C H
Sbjct: 367 F-KSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSML-GALLNGCINH 424
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
GN+E+ E V +K++E++ G YV + N+ A +F A +R M+++ K+ G S+
Sbjct: 425 GNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSI 484
Query: 454 V 454
+
Sbjct: 485 L 485
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 252 bits (644), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 238/423 (56%), Gaps = 48/423 (11%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA----TLS 88
++N L +LA ++ LY ++ +I S D FTY+++++ C T++
Sbjct: 145 VWNALFRALTLAGHGEEVLGLYWKMNRIGVES--------DRFTYTYVLKACVASECTVN 196
Query: 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMIT 148
H G ++HA +++ G+ SHVY+ T LV+MY
Sbjct: 197 HLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA---------------------------- 228
Query: 149 GLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMV-ACEYTEPSE 207
++G +++A +F MP RNVVSW+ +I Y + ++ EAL FR+M+ + + P+
Sbjct: 229 ---RFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285
Query: 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267
+T+++VL A ++ +LIHGY +RG + + V++ L+ Y +CG + ++F+
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSI-LPVISALVTMYGRCGKLEVGQRVFD 344
Query: 268 DISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV 327
+ +++VSW S+IS + +HG GK+A++ F M G P VTF+SVL ACSH GLV
Sbjct: 345 RM--HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
Query: 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLL 387
EEG F+ M + + P I+HY C++D+LGRA RL++A K + +E VW +LL
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE-PGPKVWGSLL 461
Query: 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447
G+C HGNVE+ ER +R++ +E G+YVL+ +I A + + +R++++++ R K
Sbjct: 462 GSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK 521
Query: 448 VPG 450
+PG
Sbjct: 522 LPG 524
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/443 (25%), Positives = 178/443 (40%), Gaps = 88/443 (19%)
Query: 55 KQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTA 114
KQ ++ + SP TY LI C S + ++H I G ++ T
Sbjct: 63 KQAIRVLSQESSP-----SQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATK 117
Query: 115 LVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSW 174
L+ MY LG + + K+FD+ +R + WN + L G E L
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL------------ 165
Query: 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGE 234
Y +MNR F + SE T+ ++ + IH +
Sbjct: 166 ------YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKG----------KEIHAHLT 209
Query: 235 KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKE 294
+RG+++ + ++ L+D YA+ GC+ AS +F + V +N+VSW+++I+ +A +G E
Sbjct: 210 RRGYSSH-VYIMTTLVDMYARFGCVDYASYVFGGMPV--RNVVSWSAMIACYAKNGKAFE 266
Query: 295 AVENFGRMQK--VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC--EVLPDIKHY 350
A+ F M + PN VT +SVL AC+ +E+G ++ +LP I
Sbjct: 267 ALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI--- 323
Query: 351 GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTL------------------------ 386
L+ M GR G+LE ++ + DVV W +L
Sbjct: 324 SALVTMYGRCGKLEVGQRVFDRMHDR--DVVSWNSLISSYGVHGYGKKAIQIFEEMLANG 381
Query: 387 -----------LGACSFHGNVEMGERVTRKILEMERGYG-----GDYVLMYNILAGVGRF 430
LGACS G VE G+R+ M R +G Y M ++L R
Sbjct: 382 ASPTPVTFVSVLGACSHEGLVEEGKRLFET---MWRDHGIKPQIEHYACMVDLLGRANRL 438
Query: 431 GDAERLRRVMDERNAFKVPGCSL 453
+A ++ + M KV G L
Sbjct: 439 DEAAKMVQDMRTEPGPKVWGSLL 461
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 252 bits (644), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 210/344 (61%), Gaps = 8/344 (2%)
Query: 113 TALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV 172
++++ YV G ++D+ LFD MP R++VTW MI G K G + A++LF++MP R+VV
Sbjct: 256 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 315
Query: 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGY 232
++ ++ GY + EAL +F M + P + T++ VLPAI Q G + +H Y
Sbjct: 316 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375
Query: 233 -GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGM 291
EK+ + + V LID Y+KCG I A +FE I E K++ W ++I G A+HG+
Sbjct: 376 IVEKQFYLGGKLGV--ALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGL 431
Query: 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG 351
G+ A + +++++ LKP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYG
Sbjct: 432 GESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 491
Query: 352 CLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411
C++D+L R+G +E A+ +P E D V+WRT L ACS H E GE V + ++ ++
Sbjct: 492 CMVDILSRSGSIELAKNLIEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLI-LQA 549
Query: 412 GYG-GDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
GY YVL+ N+ A G + D R+R +M ER K+PGCS +
Sbjct: 550 GYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 212/447 (47%), Gaps = 54/447 (12%)
Query: 1 MHILQNSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYS-----LAESPQKAFLLYK 55
+H+L + +T +++ QIH L+ T + + + +L F S LA+ + F Y
Sbjct: 16 IHVLGSCKTSDDVN-QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYH 74
Query: 56 QLQ--------------QIYTHSHSPLPPL--------------FDSFTYSFLIRTCATL 87
I +HSH P D F+ S +++ C+ L
Sbjct: 75 VCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRL 134
Query: 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMI 147
G Q+H + K G S +++ L+ +Y+ G L S ++FD MP+R+ V++N MI
Sbjct: 135 GFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMI 194
Query: 148 TGLVKWGELEFARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEP 205
G VK G + AR LF+ MP +N++SW +I GY ++++ + + K+ A + E
Sbjct: 195 DGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYA---QTSDGVDIASKLFA-DMPEK 250
Query: 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKL 265
I+ +++ ++G ++ + + +R D+ +ID YAK G + A L
Sbjct: 251 DLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMIDGYAKLGFVHHAKTL 305
Query: 266 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHG 324
F+ + +++V++ S+++G+ + EA+E F M+K L P+ T + VL A +
Sbjct: 306 FDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQL 363
Query: 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR 384
G + + ++ +VE+ L K LIDM + G ++ A GI ++ D W
Sbjct: 364 GRLSKAIDMHLYIVEKQFYLGG-KLGVALIDMYSKCGSIQHAMLVFEGIENKSID--HWN 420
Query: 385 TLLGACSFHGNVEMGERVTRKILEMER 411
++G + HG +GE +L++ER
Sbjct: 421 AMIGGLAIHG---LGESAFDMLLQIER 444
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 212/383 (55%), Gaps = 6/383 (1%)
Query: 74 SFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 133
SFT+S L++ C T+ NLG Q HA ++ VYV +++MYV + + K+FD
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208
Query: 134 EMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALAL 193
EMPER++++W +I + G +E A LFE +P +++V+WT ++ G+ + + EAL
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268
Query: 194 FRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL-NCLIDT 252
F +M E+T+ + A Q G K +K G++ D V+ + LID
Sbjct: 269 FDRMEKSG-IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDM 327
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRM-QKVGLKPNR 311
Y+KCG + A +F +S+ KN+ +++S+I G A HG +EA+ F M + +KPN
Sbjct: 328 YSKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNT 385
Query: 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTAL 371
VTF+ L ACSH GLV++G FD M + V P HY C++D+LGR GRL++A +
Sbjct: 386 VTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIK 445
Query: 372 GIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431
+ E VW LLGAC H N E+ E + E+E G+Y+L+ N+ A G +G
Sbjct: 446 TMSVE-PHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWG 504
Query: 432 DAERLRRVMDERNAFKVPGCSLV 454
R+R+++ E+ K P S V
Sbjct: 505 GVLRVRKLIKEKGLKKTPAVSWV 527
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 73/338 (21%)
Query: 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWG 154
Q+H + + G Y+ T L+ LG D
Sbjct: 67 QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDP-------------------------- 100
Query: 155 ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVL 214
+AR + E + RN WT +I GY + +EA+A++ M E T P T A+L
Sbjct: 101 ---YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALL 156
Query: 215 PAIWQNGDVKSCQLIHGYGEK-RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDI---- 269
A D+ + H + RGF + V N +ID Y KC I A K+F+++
Sbjct: 157 KACGTMKDLNLGRQFHAQTFRLRGFCF--VYVGNTMIDMYVKCESIDCARKVFDEMPERD 214
Query: 270 -------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304
S+ K++V+WT++++GFA + +EA+E F RM+K
Sbjct: 215 VISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEK 274
Query: 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV--LPDIKHY---GCLIDMLGR 359
G++ + VT ++AC+ G + + D+ V+ + H LIDM +
Sbjct: 275 SGIRADEVTVAGYISACAQLGASK----YADRAVQIAQKSGYSPSDHVVIGSALIDMYSK 330
Query: 360 AGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVE 397
G +E+A + + ++ +V + +++ + HG +
Sbjct: 331 CGNVEEAVNVFMSMNNK--NVFTYSSMILGLATHGRAQ 366
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 14/202 (6%)
Query: 201 EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIF 260
E + E+ + +++ + ++ + IHG+ ++G +L LI T K G
Sbjct: 40 EISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQ-SCYILTKLIRTLTKLGVPM 98
Query: 261 S--ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318
A ++ E V+ +N WT++I G+A+ G EA+ +G M+K + P TF ++L
Sbjct: 99 DPYARRVIE--PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALL 156
Query: 319 NACSHGGLVEEGLNFFDKMVEE---CEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS 375
AC + G F + C V +IDM + ++ A K +P
Sbjct: 157 KACGTMKDLNLGRQFHAQTFRLRGFCFVYVG----NTMIDMYVKCESIDCARKVFDEMPE 212
Query: 376 EITDVVVWRTLLGACSFHGNVE 397
DV+ W L+ A + GN+E
Sbjct: 213 R--DVISWTELIAAYARVGNME 232
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 149/468 (31%), Positives = 252/468 (53%), Gaps = 35/468 (7%)
Query: 16 QIHSHLLTTNSLLHHSQLFNTLLHFY------SLAES--------------------PQK 49
QIH H++ + L + L+N+L+ FY +AE ++
Sbjct: 151 QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQ 210
Query: 50 AFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVG--FQS 107
F L + L+ + + P D +T L+ C LS LG +H I + G + S
Sbjct: 211 GFSL-EALKLYFKMVSDGIEP--DEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSS 267
Query: 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMP 167
++ ++ AL++MY + + FD M ++++ +WN M+ G V+ G++E A+++F++MP
Sbjct: 268 NLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP 327
Query: 168 CRNVVSWTGIIDGYTRMNRSNEAL-ALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226
R++VSW ++ GY++ + LF +M E +P +T+++++ NG++
Sbjct: 328 KRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHG 387
Query: 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGF 286
+ +HG + D + + LID Y KCG I A +F+ + K++ WTS+I+G
Sbjct: 388 RWVHGLVIRLQLKG-DAFLSSALIDMYCKCGIIERAFMVFK--TATEKDVALWTSMITGL 444
Query: 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD 346
A HG G++A++ FGRMQ+ G+ PN VT L+VL ACSH GLVEEGL+ F+ M ++ P+
Sbjct: 445 AFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPE 504
Query: 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406
+HYG L+D+L RAGR+E+A+ +W ++L AC ++E E ++
Sbjct: 505 TEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTEL 564
Query: 407 LEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
L++E G YVL+ NI A VGR+G +++ R M+ R K G S V
Sbjct: 565 LKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 91/401 (22%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
++NT++ +++ S + F LY + + H SP D T+ +L++ + LS
Sbjct: 102 VYNTMIS--AVSSSKNECFGLYSSMIR---HRVSP-----DRQTFLYLMKASSFLSEVK- 150
Query: 93 GTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLV 151
Q+H I G S Y+ +LV Y+ LG + K+F MP ++ ++NVMI G
Sbjct: 151 --QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVG-- 206
Query: 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITIL 211
Y + S EAL L+ KMV+ + EP E T+L
Sbjct: 207 -----------------------------YAKQGFSLEALKLYFKMVS-DGIEPDEYTVL 236
Query: 212 AVLPAIWQNGDVKSCQLIHGYGEKRG-FTAFDIRVLNCLIDTYAKC-------------- 256
++L D++ + +HG+ E+RG + ++ + N L+D Y KC
Sbjct: 237 SLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMK 296
Query: 257 -----------------GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV-EN 298
G + +A +F+ + +++LVSW S++ G++ G + V E
Sbjct: 297 KKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP--KRDLVSWNSLLFGYSKKGCDQRTVREL 354
Query: 299 FGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357
F M V +KP+RVT +S+++ ++ G + G + +V ++ D LIDM
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHG-RWVHGLVIRLQLKGDAFLSSALIDMY 413
Query: 358 GRAGRLEQA---EKTALGIPSEITDVVVWRTLLGACSFHGN 395
+ G +E+A KTA DV +W +++ +FHGN
Sbjct: 414 CKCGIIERAFMVFKTATE-----KDVALWTSMITGLAFHGN 449
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 248 bits (633), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 216/388 (55%), Gaps = 10/388 (2%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 131
D T + +I CA+LS +G ++H V+ ++ + ++ A V+MY +K++ +
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFI 311
Query: 132 FDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEAL 191
FD MP RN++ MI+G + AR +F +M RNVVSW +I GYT+ + EAL
Sbjct: 312 FDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEAL 371
Query: 192 ALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT-----AFDIRVL 246
+LF ++ E P+ + +L A ++ H + K GF DI V
Sbjct: 372 SLF-CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 247 NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG 306
N LID Y KCGC+ +F + +ER + VSW ++I GFA +G G EA+E F M + G
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKM-MER-DCVSWNAMIIGFAQNGYGNEALELFREMLESG 488
Query: 307 LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366
KP+ +T + VL+AC H G VEEG ++F M + V P HY C++D+LGRAG LE+A
Sbjct: 489 EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEA 548
Query: 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426
+ +P + D V+W +LL AC H N+ +G+ V K+LE+E G YVL+ N+ A
Sbjct: 549 KSMIEEMPMQ-PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAE 607
Query: 427 VGRFGDAERLRRVMDERNAFKVPGCSLV 454
+G++ D +R+ M + K PGCS +
Sbjct: 608 LGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 181/344 (52%), Gaps = 7/344 (2%)
Query: 66 SPLPPLFDSFTYSFLIRTCATLSHPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYVSLGF 124
+ L DS ++ L+ +C + + +HA + K GF + +++ L++ Y G
Sbjct: 11 ADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGS 70
Query: 125 LKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRM 184
L+D ++FD+MP+RN+ TWN ++TGL K G L+ A SLF MP R+ +W ++ G+ +
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244
+R EAL F M+ E +E + +VL A D+ +H K F + D+
Sbjct: 131 DRCEEALCYF-AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS-DVY 188
Query: 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304
+ + L+D Y+KCG + A ++F+++ +N+VSW S+I+ F +G EA++ F M +
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMG--DRNVVSWNSLITCFEQNGPAVEALDVFQMMLE 246
Query: 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364
++P+ VT SV++AC+ ++ G ++V+ ++ DI +DM + R++
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306
Query: 365 QAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILE 408
+A +P I +V+ +++ + + + + K+ E
Sbjct: 307 EARFIFDSMP--IRNVIAETSMISGYAMAASTKAARLMFTKMAE 348
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 179/407 (43%), Gaps = 82/407 (20%)
Query: 71 LFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 130
+ + ++++ ++ C+ L+ N G Q+H++I+K F S VY+ +ALV+MY G + D+ +
Sbjct: 149 VLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQR 208
Query: 131 LFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEA 190
+FDEM +RN+V+WN +IT + G + EA
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGP-------------------------------AVEA 237
Query: 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250
L +F+ M+ EP E+T+ +V+ A +K Q +HG K DI + N +
Sbjct: 238 LDVFQMMLESR-VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFV 296
Query: 251 DTYAKCGCIFSASKLFEDISVE-----------------------------RKNLVSWTS 281
D YAKC I A +F+ + + +N+VSW +
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNA 356
Query: 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC-----------SHGGLVEEG 330
+I+G+ +G +EA+ F +++ + P +F ++L AC +H +++ G
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416
Query: 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390
F + EE DI LIDM + G +E+ + D V W ++
Sbjct: 417 FKF--QSGEE----DDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER--DCVSWNAMIIGF 468
Query: 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437
+ +G + R++L E G D++ M +L+ G G E R
Sbjct: 469 AQNGYGNEALELFREML--ESGEKPDHITMIGVLSACGHAGFVEEGR 513
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 239/448 (53%), Gaps = 54/448 (12%)
Query: 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLF-DSFTYSFLIRTCATLSHPNLG 93
N+++ Y+ + +P+ A +++++ L P+F D ++++F+++ CA G
Sbjct: 109 NSVIRAYANSSTPEVALTVFREML---------LGPVFPDKYSFTFVLKACAAFCGFEEG 159
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
Q+H + K G + V+V LVN+Y G+ + + K+ D MP R+ V+WN +++ ++
Sbjct: 160 RQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEK 219
Query: 154 GELEFARSLFEE-------------------------------MPCRNVVSWTGIIDGYT 182
G ++ AR+LF+E MP R+VVSW ++ Y
Sbjct: 220 GLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYA 279
Query: 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD 242
+ NE L +F KM+ +P T+++VL A G + + +H Y +K G +
Sbjct: 280 HVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIE-IE 338
Query: 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRM 302
+ L+D Y+KCG I A ++F S ++++ +W SIIS ++HG+GK+A+E F M
Sbjct: 339 GFLATALVDMYSKCGKIDKALEVFRATS--KRDVSTWNSIISDLSVHGLGKDALEIFSEM 396
Query: 303 QKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362
G KPN +TF+ VL+AC+H G++++ F+ M V P I+HYGC++D+LGR G+
Sbjct: 397 VYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGK 456
Query: 363 LEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422
+E+AE+ IP++ +++ +LLGAC G +E ER+ ++LE+ Y M N
Sbjct: 457 IEEAEELVNEIPADEASILL-ESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSN 515
Query: 423 ILAGVGRFGD---------AERLRRVMD 441
+ A GR+ AER+ R +D
Sbjct: 516 LYASDGRWEKVIDGRRNMRAERVNRSLD 543
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 226/424 (53%), Gaps = 20/424 (4%)
Query: 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGT 94
NTLL YS A +++++ +Y+ +I A
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSV------------VSYTSMIAGYAREGLAGEAV 382
Query: 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNL----VTWNVMITGL 150
+L + + G VY TA++N L + ++ + + E +L N ++
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 151 VKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITI 210
K G ++ A +F EM ++++SW II GY++ +NEAL+LF ++ + P E T+
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 502
Query: 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
VLPA + IHGY + G+ + D V N L+D YAKCG + A LF+DI+
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFS-DRHVANSLVDMYAKCGALLLAHMLFDDIA 561
Query: 271 VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330
K+LVSWT +I+G+ MHG GKEA+ F +M++ G++ + ++F+S+L ACSH GLV+EG
Sbjct: 562 --SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619
Query: 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390
FF+ M EC++ P ++HY C++DML R G L +A + +P D +W LL C
Sbjct: 620 WRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP-PDATIWGALLCGC 678
Query: 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPG 450
H +V++ E+V K+ E+E G YVLM NI A ++ +RLR+ + +R K PG
Sbjct: 679 RIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPG 738
Query: 451 CSLV 454
CS +
Sbjct: 739 CSWI 742
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 174/363 (47%), Gaps = 56/363 (15%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
DS+T+S + ++ ++L + G QLH I K GF V +LV Y+
Sbjct: 194 DSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYL------------ 241
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
K ++ AR +F+EM R+V+SW II+GY + + L+
Sbjct: 242 -------------------KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252
+F +M+ E TI++V + + + +H G K F+ D R N L+D
Sbjct: 283 VFVQMLV-SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED-RFCNTLLDM 340
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV 312
Y+KCG + SA +F ++S +++VS+TS+I+G+A G+ EAV+ F M++ G+ P+
Sbjct: 341 YSKCGDLDSAKAVFREMS--DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398
Query: 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372
T +VLN C+ L++EG + ++E ++ DI L+DM + G +++AE +
Sbjct: 399 TVTAVLNCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAKCGSMQEAE--LVF 455
Query: 373 IPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432
+ D++ W T++G S + Y + + ++N+L RF
Sbjct: 456 SEMRVKDIISWNTIIGGYS------------------KNCYANEALSLFNLLLEEKRFSP 497
Query: 433 AER 435
ER
Sbjct: 498 DER 500
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 55/374 (14%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
D T +++ CA G ++ I GF + + L MY + G LK++S++F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
DE+ + WN+++ L K G+ + ++
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDF-------------------------------SGSIG 181
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252
LF+KM++ E T V + V + +HG+ K GF + V N L+
Sbjct: 182 LFKKMMS-SGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAF 239
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV 312
Y K + SA K+F++++ ++++SW SII+G+ +G+ ++ + F +M G++ +
Sbjct: 240 YLKNQRVDSARKVFDEMT--ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLA 297
Query: 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372
T +SV C+ L+ G V+ C D + L+DM + G L+ A+
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHSIGVKACFSRED-RFCNTLLDMYSKCGDLDSAK----A 352
Query: 373 IPSEITD--VVVWRTLLGACSFHGNVEMGERVTRKILE--MERGYGGDYVLMYNILAGVG 428
+ E++D VV + +++ + G GE V K+ E E G D + +L
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLA--GEAV--KLFEEMEEEGISPDVYTVTAVLNCCA 408
Query: 429 RFGDAERLRRVMDE 442
R+ R++DE
Sbjct: 409 RY-------RLLDE 415
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 230/421 (54%), Gaps = 13/421 (3%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+NT++ Y +AF L+++++ S + P D ++ C +
Sbjct: 180 WNTMIERYCRFGLVDEAFKLFEEMKD------SNVMP--DEMILCNIVSACGRTGNMRYN 231
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
++ + + + ++ TALV MY G + + + F +M RNL M++G K
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G L+ A+ +F++ +++V WT +I Y + EAL +F +M C +P +++ +V
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM-CCSGIKPDVVSMFSV 350
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
+ A G + + +H G + ++ + N LI+ YAKCG + + +FE + R
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLES-ELSINNALINMYAKCGGLDATRDVFEKMP--R 407
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+N+VSW+S+I+ +MHG +A+ F RM++ ++PN VTF+ VL CSH GLVEEG
Sbjct: 408 RNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKI 467
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F M +E + P ++HYGC++D+ GRA L +A + +P ++VV+W +L+ AC H
Sbjct: 468 FASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVA-SNVVIWGSLMSACRIH 526
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
G +E+G+ ++ILE+E + G VLM NI A R+ D +RRVM+E+N FK G S
Sbjct: 527 GELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSR 586
Query: 454 V 454
+
Sbjct: 587 I 587
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 169/397 (42%), Gaps = 81/397 (20%)
Query: 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHP 90
S +FN L S + P+ L Y++++ + D F++ +++ + +S
Sbjct: 76 SIVFNPFLRDLSRSSEPRATILFYQRIRHVGGR--------LDQFSFLPILKAVSKVSAL 127
Query: 91 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGL 150
G +LH V K+ +V T ++MY S G
Sbjct: 128 FEGMELHGVAFKIATLCDPFVETGFMDMYASCG--------------------------- 160
Query: 151 VKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITI 210
+ +AR++F+EM R+VV+W +I+ Y R +EA LF +M P E+ +
Sbjct: 161 ----RINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMIL 215
Query: 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
++ A + G+++ + I+ + + D +L L+ YA GC+ A + F +S
Sbjct: 216 CNIVSACGRTGNMRYNRAIYEFLIEND-VRMDTHLLTALVTMYAGAGCMDMAREFFRKMS 274
Query: 271 V-----------------------------ERKNLVSWTSIISGFAMHGMGKEAVENFGR 301
V E+K+LV WT++IS + +EA+ F
Sbjct: 275 VRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE 334
Query: 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC----EVLPDIKHYGCLIDML 357
M G+KP+ V+ SV++AC++ G++++ K V C + ++ LI+M
Sbjct: 335 MCCSGIKPDVVSMFSVISACANLGILDKA-----KWVHSCIHVNGLESELSINNALINMY 389
Query: 358 GRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHG 394
+ G L+ +P +VV W +++ A S HG
Sbjct: 390 AKCGGLDATRDVFEKMPRR--NVVSWSSMINALSMHG 424
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 225/444 (50%), Gaps = 66/444 (14%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT------------------- 113
D +T+ +++ C+ +G+ +H ++ ++GF V V T
Sbjct: 109 DEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVF 168
Query: 114 ------------ALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARS 161
ALV YV G L+++ +FD MPERNL +WN ++ GLVK G+L A+
Sbjct: 169 GEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKK 228
Query: 162 LFEEMPCRNVVSWTGIIDGYTR-------------------------------MNRSNEA 190
LF+EMP R+++S+T +IDGY + + NEA
Sbjct: 229 LFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEA 288
Query: 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250
+F +M A + +P E ++ ++ A Q G + C+ + Y +R V+ LI
Sbjct: 289 FKVFSEMCA-KNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALI 347
Query: 251 DTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310
D AKCG + A+KLFE++ +++LVS+ S++ G A+HG G EA+ F +M G+ P+
Sbjct: 348 DMNAKCGHMDRAAKLFEEMP--QRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPD 405
Query: 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTA 370
V F +L C LVEEGL +F+ M ++ +L HY C++++L R G+L++A +
Sbjct: 406 EVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELI 465
Query: 371 LGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRF 430
+P E W +LLG CS HGN E+ E V R + E+E G YVL+ NI A + R+
Sbjct: 466 KSMPFE-AHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRW 524
Query: 431 GDAERLRRVMDERNAFKVPGCSLV 454
D LR M+E K+ G S +
Sbjct: 525 TDVAHLRDKMNENGITKICGRSWI 548
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 254/487 (52%), Gaps = 76/487 (15%)
Query: 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHP 90
S L N+++ Y +F LY+ L++ + P D+FT++ L ++C+
Sbjct: 42 SFLSNSMIKAYLETRQYPDSFALYRDLRK-----ETCFAP--DNFTFTTLTKSCSLSMCV 94
Query: 91 NLGTQLHAVISKVGFQSHVYVNT-------------------------------ALVNMY 119
G QLH+ I + GF + +YV+T AL++ Y
Sbjct: 95 YQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGY 154
Query: 120 VSLGFLKDSSKLFDEMPE-RNLVTWNVMITGLVKWGELEFARSLFEEM------------ 166
+ G L +SKLFD+MP +++V +N M+ G VK G++ AR LF+EM
Sbjct: 155 IRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMI 214
Query: 167 -------------------PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE 207
P RN+VSW +I GY + + E + LF++M A +P +
Sbjct: 215 HGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDD 274
Query: 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267
+TIL+VLPAI G + + H + +++ ++V ++D Y+KCG I A ++F+
Sbjct: 275 VTILSVLPAISDTGALSLGEWCHCFVQRKKLDK-KVKVCTAILDMYSKCGEIEKAKRIFD 333
Query: 268 DISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV 327
++ K + SW ++I G+A++G + A++ F M + KP+ +T L+V+ AC+HGGLV
Sbjct: 334 EMP--EKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEKPDEITMLAVITACNHGGLV 390
Query: 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLL 387
EEG +F M E + I+HYGC++D+LGRAG L++AE +P E +++ + L
Sbjct: 391 EEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIIL-SSFL 448
Query: 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447
AC + ++E ER+ +K +E+E G+YVL+ N+ A R+ D ++ VM + A K
Sbjct: 449 SACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKK 508
Query: 448 VPGCSLV 454
GCSL+
Sbjct: 509 EVGCSLI 515
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 233/424 (54%), Gaps = 48/424 (11%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N ++ Y+ + ++A L+K + + D T ++ CA LG
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMKTNVRP--------DESTMVTVVSACAQSGSIELG 285
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
Q+H I GF S++ + AL+++Y K
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYS-------------------------------KC 314
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
GELE A LFE +P ++V+SW +I GYT MN EAL LF++M+ T P+++T+L++
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSI 373
Query: 214 LPAIWQNGDVKSCQLIHGYGEKR--GFT-AFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
LPA G + + IH Y +KR G T A +R LID YAKCG I +A ++F S
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT--SLIDMYAKCGDIEAAHQVFN--S 429
Query: 271 VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330
+ K+L SW ++I GFAMHG + + F RM+K+G++P+ +TF+ +L+ACSH G+++ G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Query: 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390
+ F M ++ ++ P ++HYGC+ID+LG +G L + + + + D V+W +LL AC
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG-LFKEAEEMINMMEMEPDGVIWCSLLKAC 548
Query: 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPG 450
HGNVE+GE ++++E G YVL+ NI A GR+ + + R +++++ KVPG
Sbjct: 549 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 608
Query: 451 CSLV 454
CS +
Sbjct: 609 CSSI 612
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 203/368 (55%), Gaps = 19/368 (5%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
++NT+ ++L+ P A LY + S LP +S+T+ F++++CA
Sbjct: 101 IWNTMFRGHALSSDPVSALKLY-----VCMISLGLLP---NSYTFPFVLKSCAKSKAFKE 152
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q+H + K+G +YV+T+L++MYV G L+D+ K+FD+ P R++V++ +I G
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G +E A+ LF+E+P ++VVSW +I GY EAL LF+ M+ P E T++
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN-VRPDESTMVT 271
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
V+ A Q+G ++ + +H + + GF + +++++N LID Y+KCG + +A LFE +
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGS-NLKIVNALIDLYSKCGELETACGLFERLPY- 329
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL- 331
K+++SW ++I G+ + KEA+ F M + G PN VT LS+L AC+H G ++ G
Sbjct: 330 -KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 332 --NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGA 389
+ DK ++ ++ LIDM + G +E A + I + + W ++
Sbjct: 389 IHVYIDKRLKGVTNASSLR--TSLIDMYAKCGDIEAAHQVFNSILHK--SLSSWNAMIFG 444
Query: 390 CSFHGNVE 397
+ HG +
Sbjct: 445 FAMHGRAD 452
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 44/279 (15%)
Query: 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215
L +A S+F+ + N++ W + G+ + AL L+ M++ P+ T VL
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLK 142
Query: 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275
+ ++ K Q IHG+ K G D+ V LI Y + G + A K+F+ ++
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLG-CDLDLYVHTSLISMYVQNGRLEDAHKVFD--KSPHRD 199
Query: 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD 335
+VS+T++I G+A G + A + F ++ +K + V++ ++++ + G +E L F
Sbjct: 200 VVSYTALIKGYASRGYIENAQKLF---DEIPVK-DVVSWNAMISGYAETGNYKEALELFK 255
Query: 336 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN 395
M++ V PD E T + T++ AC+ G+
Sbjct: 256 DMMKT-NVRPD--------------------ESTMV-------------TVVSACAQSGS 281
Query: 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434
+E+G +V I + G+G + ++ ++ + G+ E
Sbjct: 282 IELGRQVHLWI--DDHGFGSNLKIVNALIDLYSKCGELE 318
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 212/381 (55%), Gaps = 44/381 (11%)
Query: 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC 168
V+ TA+V+ Y+ ++++ +LFD+MPERN V+WN M+ G V+ +E A+ LF+ MPC
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340
Query: 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG------- 221
RNV +W +I GY + + +EA LF KM + ++ A++ Q+G
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKM-----PKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 222 -------------------------DVKSCQL---IHGYGEKRGFTAFDIRVLNCLIDTY 253
DV + +L +HG K G+ V N L+ Y
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCFVGNALLLMY 454
Query: 254 AKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT 313
KCG I A+ LF++++ K++VSW ++I+G++ HG G+ A+ F M++ GLKP+ T
Sbjct: 455 CKCGSIEEANDLFKEMAG--KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512
Query: 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373
++VL+ACSH GLV++G +F M ++ V+P+ +HY C++D+LGRAG LE A +
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572
Query: 374 PSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDA 433
P E D +W TLLGA HGN E+ E KI ME G YVL+ N+ A GR+GD
Sbjct: 573 PFE-PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631
Query: 434 ERLRRVMDERNAFKVPGCSLV 454
+LR M ++ KVPG S +
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWI 652
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 179/389 (46%), Gaps = 38/389 (9%)
Query: 20 HLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSF 79
H + N L + +F+SL + Q QI PL DS +
Sbjct: 17 HYTSLNGLKRRCNNAHGAANFHSLKRATQ---------TQIQKSQTKPLLKCGDSDIKEW 67
Query: 80 LIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERN 139
+ + + L V ++ S V N +++ Y+ G + + KLFDEMPER+
Sbjct: 68 NVAISSYMRTGRCNEALR-VFKRMPRWSSVSYN-GMISGYLRNGEFELARKLFDEMPERD 125
Query: 140 LVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVA 199
LV+WNVMI G V+ L AR LFE MP R+V SW ++ GY + ++A ++F +M
Sbjct: 126 LVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM-- 183
Query: 200 CEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259
E ++++ A+L A QN ++ ++ E ++ NCL+ + K I
Sbjct: 184 ---PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSW-----NCLLGGFVKKKKI 235
Query: 260 FSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR--MQKVGLKPNRVTFLSV 317
A + F+ ++V +++VSW +II+G+A G EA + F +Q V T+ ++
Sbjct: 236 VEARQFFDSMNV--RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV------FTWTAM 287
Query: 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI 377
++ +VEE FDKM E EV + ++ + R+E A++ +P
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAGYVQGERMEMAKELFDVMPCR- 341
Query: 378 TDVVVWRTLLGACSFHGNVEMGERVTRKI 406
+V W T++ + G + + + K+
Sbjct: 342 -NVSTWNTMITGYAQCGKISEAKNLFDKM 369
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 159/358 (44%), Gaps = 50/358 (13%)
Query: 113 TALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV 172
AL++ YV ++++ LF LV+WN ++ G VK ++ AR F+ M R+VV
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVV 251
Query: 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQ----- 227
SW II GY + + +EA LF E T A++ QN V+ +
Sbjct: 252 SWNTIITGYAQSGKIDEARQLFD-----ESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 306
Query: 228 -----------LIHGY--GEKRGFTA--FD------IRVLNCLIDTYAKCGCIFSASKLF 266
++ GY GE+ FD + N +I YA+CG I A LF
Sbjct: 307 MPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 366
Query: 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326
+ + +++ VSW ++I+G++ G EA+ F +M++ G + NR +F S L+ C+
Sbjct: 367 DKMP--KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVA 424
Query: 327 VEEGLNFFDKMVEECEVLPDIKHYGCLID-----MLGRAGRLEQAEKTALGIPSEITDVV 381
+E G ++V+ GC + M + G +E+A + + D+V
Sbjct: 425 LELGKQLHGRLVKGG------YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK--DIV 476
Query: 382 VWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVGRFGDAERLRR 438
W T++ S HG GE R M+R G D M +L+ G ++ R+
Sbjct: 477 SWNTMIAGYSRHG---FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/425 (33%), Positives = 225/425 (52%), Gaps = 49/425 (11%)
Query: 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGT 94
NT++ +SL+++P + F L++ L++ +S P PL SF I++ L G
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRR---NSSLPANPLSSSFALKCCIKSGDLLG----GL 133
Query: 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWG 154
Q+H I GF S + T L+++Y + D+ K+FDE+P+
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPK----------------- 176
Query: 155 ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMV----ACEYTEPSEITI 210
R+ VSW + Y R R+ + L LF KM C +P +T
Sbjct: 177 --------------RDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGC--VKPDGVTC 220
Query: 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
L L A G + + +H + ++ G + + + N L+ Y++CG + A ++F
Sbjct: 221 LLALQACANLGALDFGKQVHDFIDENGLSG-ALNLSNTLVSMYSRCGSMDKAYQVF--YG 277
Query: 271 VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330
+ +N+VSWT++ISG AM+G GKEA+E F M K G+ P T +L+ACSH GLV EG
Sbjct: 278 MRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEG 337
Query: 331 LNFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGA 389
+ FFD+M E ++ P++ HYGC++D+LGRA L++A + + D +WRTLLGA
Sbjct: 338 MMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMK-PDSTIWRTLLGA 396
Query: 390 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVP 449
C HG+VE+GERV ++E++ GDYVL+ N + VG++ LR +M E+ P
Sbjct: 397 CRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKP 456
Query: 450 GCSLV 454
GCS +
Sbjct: 457 GCSAI 461
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 241 bits (615), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 216/385 (56%), Gaps = 7/385 (1%)
Query: 72 FDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 131
FD T + C+ L + +G +++ + F+ V + ALV+M+ G L + +
Sbjct: 146 FDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAV 204
Query: 132 FDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEAL 191
FD M ++N+ W M+ G V G ++ AR LFE P ++VV WT +++GY + NR +EAL
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 192 ALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251
LFR M P ++++L Q G ++ + IHGY + T D V L+D
Sbjct: 265 ELFRCMQTAG-IRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTV-DKVVGTALVD 322
Query: 252 TYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311
YAKCGCI +A ++F +I + ++ SWTS+I G AM+GM A++ + M+ VG++ +
Sbjct: 323 MYAKCGCIETALEVFYEI--KERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDA 380
Query: 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK--T 369
+TF++VL AC+HGG V EG F M E V P +H CLID+L RAG L++AE+
Sbjct: 381 ITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELID 440
Query: 370 ALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGR 429
+ S+ T V V+ +LL A +GNV++ ERV K+ ++E + L+ ++ A R
Sbjct: 441 KMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANR 500
Query: 430 FGDAERLRRVMDERNAFKVPGCSLV 454
+ D +RR M + K PGCS +
Sbjct: 501 WEDVTNVRRKMKDLGIRKFPGCSSI 525
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 182/423 (43%), Gaps = 88/423 (20%)
Query: 21 LLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFL 80
LL T SLL ++N +L + +S K L+ +L+ L P D+FT +
Sbjct: 5 LLQTPSLL----MYNKMLKSLADGKSFTKVLALFGELRG------QGLYP--DNFTLPVV 52
Query: 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNL 140
+++ L G ++H K G + YV+ +L+ MY SLG
Sbjct: 53 LKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLG----------------- 95
Query: 141 VTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200
++E +F+EMP R+VVSW G+I Y R +A+ +F++M
Sbjct: 96 --------------KIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQE 141
Query: 201 EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD--IRVLNCLIDTYAKCGC 258
+ E TI++ L A +++ + I+ + T F+ +R+ N L+D + KCGC
Sbjct: 142 SNLKFDEGTIVSTLSACSALKNLEIGERIYRF----VVTEFEMSVRIGNALVDMFCKCGC 197
Query: 259 IFSASKLFED----------------ISVER-------------KNLVSWTSIISGFAMH 289
+ A +F+ +S R K++V WT++++G+
Sbjct: 198 LDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQF 257
Query: 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349
EA+E F MQ G++P+ +S+L C+ G +E+G + + E V D
Sbjct: 258 NRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTVDKVV 316
Query: 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT--DVVVWRTLLGACSFHGNVEMGERVTRKIL 407
L+DM + G +E TAL + EI D W +L+ + +G M R
Sbjct: 317 GTALVDMYAKCGCIE----TALEVFYEIKERDTASWTSLIYGLAMNG---MSGRALDLYY 369
Query: 408 EME 410
EME
Sbjct: 370 EME 372
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 17/240 (7%)
Query: 205 PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASK 264
P T+ VL +I + V + +HGY K G FD V N L+ YA G I K
Sbjct: 44 PDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLE-FDSYVSNSLMGMYASLGKIEITHK 102
Query: 265 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRM-QKVGLKPNRVTFLSVLNACSH 323
+F+++ ++++VSW +IS + +G ++A+ F RM Q+ LK + T +S L+ACS
Sbjct: 103 VFDEMP--QRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSA 160
Query: 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW 383
+E G + +V E E+ ++ L+DM + G L++A + + +V W
Sbjct: 161 LKNLEIGERIYRFVVTEFEM--SVRIGNALVDMFCKCGCLDKARAVFDSMRDK--NVKCW 216
Query: 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL---MYNILAGVGRFGDAERLRRVM 440
+++ G V G R+ + ER D VL M N RF +A L R M
Sbjct: 217 TSMV-----FGYVSTG-RIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM 270
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 238/464 (51%), Gaps = 67/464 (14%)
Query: 17 IHSHLLTTNSLLHHSQLF-NTLLHFY----SLAES-------PQKAFLLYKQLQQIYTHS 64
+H+H+L S+ H + NTLL+ Y SL E+ PQ+ F+ + L Y+
Sbjct: 82 VHAHIL--QSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH 139
Query: 65 HSPLPPLF------------DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112
P L + FT S +I+ A G QLH K GF S+V+V
Sbjct: 140 DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVG 199
Query: 113 TALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV 172
+AL+++Y G + D+ +FD + RN V
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALES-------------------------------RNDV 228
Query: 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGY 232
SW +I G+ R + + +AL LF+ M+ + PS + ++ A G ++ + +H Y
Sbjct: 229 SWNALIAGHARRSGTEKALELFQGMLRDGF-RPSHFSYASLFGACSSTGFLEQGKWVHAY 287
Query: 233 GEKRG--FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHG 290
K G AF N L+D YAK G I A K+F+ ++ ++++VSW S+++ +A HG
Sbjct: 288 MIKSGEKLVAF---AGNTLLDMYAKSGSIHDARKIFDRLA--KRDVVSWNSLLTAYAQHG 342
Query: 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHY 350
GKEAV F M++VG++PN ++FLSVL ACSH GL++EG ++++ M ++ ++P+ HY
Sbjct: 343 FGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDG-IVPEAWHY 401
Query: 351 GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410
++D+LGRAG L +A + +P E T +W+ LL AC H N E+G + E++
Sbjct: 402 VTVVDLLGRAGDLNRALRFIEEMPIEPT-AAIWKALLNACRMHKNTELGAYAAEHVFELD 460
Query: 411 RGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
G +V++YNI A GR+ DA R+R+ M E K P CS V
Sbjct: 461 PDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 163/341 (47%), Gaps = 45/341 (13%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
D Y+ L++ C G +HA I + F+ + + L+NMY G L+++ K+F
Sbjct: 59 DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
++MP+R+ VTW T +I GY++ +R +AL
Sbjct: 119 EKMPQRDFVTW-------------------------------TTLISGYSQHDRPCDALL 147
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC--QLIHGYGEKRGFTAFDIRVLNCLI 250
F +M+ Y+ P+E T+ +V+ A + + C +HG+ K GF + ++ V + L+
Sbjct: 148 FFNQMLRFGYS-PNEFTLSSVIKA--AAAERRGCCGHQLHGFCVKCGFDS-NVHVGSALL 203
Query: 251 DTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310
D Y + G + A +F+ ++E +N VSW ++I+G A ++A+E F M + G +P+
Sbjct: 204 DLYTRYGLMDDAQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPS 261
Query: 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTA 370
++ S+ ACS G +E+G M++ E L L+DM ++G + A K
Sbjct: 262 HFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIF 320
Query: 371 LGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411
+ DVV W +LL A + HG G+ EM R
Sbjct: 321 DRLAKR--DVVSWNSLLTAYAQHG---FGKEAVWWFEEMRR 356
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 238 bits (608), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 226/422 (53%), Gaps = 11/422 (2%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
++NT++ +S + P+ A ++ + S S P TY + + L
Sbjct: 91 VWNTIIRGFSRSSFPEMAISIFIDM---LCSSPSVKP---QRLTYPSVFKAYGRLGQARD 144
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G QLH ++ K G + ++ +++MYV+ G L ++ ++F M ++V WN MI G K
Sbjct: 145 GRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAK 204
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G ++ A++LF+EMP RN VSW +I G+ R R +AL +FR+M + +P T+++
Sbjct: 205 CGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKD-VKPDGFTMVS 263
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
+L A G + + IH Y + F I V+ LID Y KCGCI +FE
Sbjct: 264 LLNACAYLGASEQGRWIHEYIVRNRFELNSI-VVTALIDMYCKCGCIEEGLNVFE--CAP 320
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
+K L W S+I G A +G + A++ F +++ GL+P+ V+F+ VL AC+H G V
Sbjct: 321 KKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADE 380
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392
FF M E+ + P IKHY ++++LG AG LE+AE +P E D V+W +LL AC
Sbjct: 381 FFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVE-EDTVIWSSLLSACRK 439
Query: 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
GNVEM +R + + +++ YVL+ N A G F +A R +M ER K GCS
Sbjct: 440 IGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCS 499
Query: 453 LV 454
+
Sbjct: 500 SI 501
>sp|Q9FIH2|PP414_ARATH Pentatricopeptide repeat-containing protein At5g42450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2
SV=1
Length = 517
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 214/385 (55%), Gaps = 4/385 (1%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
+ FT+ +I + T LG QLH K+G S+V+V +A++N YV L L D+ + F
Sbjct: 92 NEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCF 151
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
D+ + N+V+ +I+G +K E E A SLF MP R+VV+W +I G+++ R+ EA+
Sbjct: 152 DDTRDPNVVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVN 211
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252
F M+ P+E T + AI + + IH K F++ V N LI
Sbjct: 212 TFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISF 271
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKPNR 311
Y+KCG + + F + E++N+VSW S+I G+A +G G+EAV F +M K L+PN
Sbjct: 272 YSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNN 331
Query: 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRLEQAEKT 369
VT L VL AC+H GL++EG +F+K V + + L +++HY C++DML R+GR ++AE+
Sbjct: 332 VTILGVLFACNHAGLIQEGYMYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEEL 391
Query: 370 ALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGR 429
+P + + W+ LLG C H N + + KILE++ YV++ N + +
Sbjct: 392 IKSMPLD-PGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMEN 450
Query: 430 FGDAERLRRVMDERNAFKVPGCSLV 454
+ + +RR M E + GCS +
Sbjct: 451 WQNVSLIRRKMKETGLKRFTGCSWI 475
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 15/258 (5%)
Query: 159 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIW 218
A +F+E+P +V+S T +I + + +R EA F++++ C P+E T V+ +
Sbjct: 46 AHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLL-CLGIRPNEFTFGTVIGSST 104
Query: 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVS 278
+ DVK + +H Y K G A ++ V + +++ Y K + A + F+D N+VS
Sbjct: 105 TSRDVKLGKQLHCYALKMGL-ASNVFVGSAVLNCYVKLSTLTDARRCFDD--TRDPNVVS 161
Query: 279 WTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTFLSVLNACSHGGLVEEGLNFFDK 336
T++ISG+ +EA+ F M P R VT+ +V+ S G EE +N F
Sbjct: 162 ITNLISGYLKKHEFEEALSLFRAM------PERSVVTWNAVIGGFSQTGRNEEAVNTFVD 215
Query: 337 MVEECEVLPDIKHYGCLIDMLGRA---GRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
M+ E V+P+ + C I + G + A+ + +V VW +L+ S
Sbjct: 216 MLREGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKC 275
Query: 394 GNVEMGERVTRKILEMER 411
GN+E K+ E +R
Sbjct: 276 GNMEDSLLAFNKLEEEQR 293
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/454 (31%), Positives = 237/454 (52%), Gaps = 47/454 (10%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
++N L + P ++ LY ++ + S SP S+TYS L++ + S
Sbjct: 93 VYNALFKGFVTCSHPIRSLELYVRMLR---DSVSP-----SSYTYSSLVKASSFASR--F 142
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTW--------- 143
G L A I K GF HV + T L++ Y + G ++++ K+FDEMPER+ + W
Sbjct: 143 GESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRR 202
Query: 144 ----------------------NVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGY 181
N +I G + G LE A SLF +MP ++++SWT +I GY
Sbjct: 203 VLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGY 262
Query: 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF 241
++ R EA+A+F KM+ E P E+T+ V+ A G ++ + +H Y + GF
Sbjct: 263 SQNKRYREAIAVFYKMME-EGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFV-L 320
Query: 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301
D+ + + L+D Y+KCG + A +F ++ +KNL W SII G A HG +EA++ F +
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVF--FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAK 378
Query: 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361
M+ +KPN VTF+SV AC+H GLV+EG + M+++ ++ +++HYG ++ + +AG
Sbjct: 379 MEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAG 438
Query: 362 RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421
+ +A + + E + V+W LL C H N+ + E K++ +E G Y L+
Sbjct: 439 LIYEALELIGNMEFE-PNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLV 497
Query: 422 NILAGVGRFGDAERLRRVMDERNAFKV-PGCSLV 454
++ A R+ D +R M E K+ PG S +
Sbjct: 498 SMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 33/301 (10%)
Query: 144 NVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYT 203
N IT + L+ A S +M NV + + G+ + +L L+ +M+ +
Sbjct: 64 NQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLR-DSV 122
Query: 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGE-------KRGFTAFDIRVLNCLIDTYAKC 256
PS T ++ VK+ +GE K GF F +++ LID Y+
Sbjct: 123 SPSSYTYSSL---------VKASSFASRFGESLQAHIWKFGF-GFHVKIQTTLIDFYSAT 172
Query: 257 GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316
G I A K+F+++ ER + ++WT+++S + + ++ + + N T
Sbjct: 173 GRIREARKVFDEMP-ERDD-IAWTTMVSAYR-RVLDMDSANSLANQMS---EKNEATSNC 226
Query: 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376
++N G +E+ + F++M + DI + +I + R +A + E
Sbjct: 227 LINGYMGLGNLEQAESLFNQM-----PVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEE 281
Query: 377 --ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434
I D V T++ AC+ G +E+G+ V + ++ G+ D + ++ + G E
Sbjct: 282 GIIPDEVTMSTVISACAHLGVLEIGKEV--HMYTLQNGFVLDVYIGSALVDMYSKCGSLE 339
Query: 435 R 435
R
Sbjct: 340 R 340
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 224/421 (53%), Gaps = 43/421 (10%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
FNT++ Y S ++A Y ++ Q + P D+FTY L++ C L G
Sbjct: 100 FNTMIRGYVNVMSFEEALCFYNEMMQ---RGNEP-----DNFTYPCLLKACTRLKSIREG 151
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
Q+H + K+G ++ V+V +L+NMY +
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYG-------------------------------RC 180
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
GE+E + ++FE++ + SW+ ++ M +E L LFR M + + E +++
Sbjct: 181 GEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSA 240
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
L A G + IHG+ R + +I V L+D Y KCGC+ A +F+ + E+
Sbjct: 241 LLACANTGALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKM--EK 297
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+N ++++++ISG A+HG G+ A+ F +M K GL+P+ V ++SVLNACSH GLV+EG
Sbjct: 298 RNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F +M++E +V P +HYGCL+D+LGRAG LE+A +T IP E D V+WRT L C
Sbjct: 358 FAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKND-VIWRTFLSQCRVR 416
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
N+E+G+ +++L++ GDY+L+ N+ + + D R R + + + PG S+
Sbjct: 417 QNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSI 476
Query: 454 V 454
V
Sbjct: 477 V 477
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 20/293 (6%)
Query: 156 LEFARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
+ +A S+F + PC + +I GY + EAL + +M+ EP T +
Sbjct: 82 MNYAASIFRGIDDPC--TFDFNTMIRGYVNVMSFEEALCFYNEMMQ-RGNEPDNFTYPCL 138
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
L A + ++ + IHG K G A D+ V N LI+ Y +CG + +S +FE + E
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEA-DVFVQNSLINMYGRCGEMELSSAVFEKL--ES 195
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENF-GRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
K SW+S++S A GM E + F G + LK +S L AC++ G + G++
Sbjct: 196 KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMS 255
Query: 333 ---FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGA 389
F + + E ++ L+DM + G L++A + E + + + ++
Sbjct: 256 IHGFLLRNISELNIIVQTS----LVDMYVKCGCLDKA--LHIFQKMEKRNNLTYSAMISG 309
Query: 390 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442
+ HG E R+ K++ + G D+V+ ++L G + RRV E
Sbjct: 310 LALHGEGESALRMFSKMI--KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAE 360
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 219/387 (56%), Gaps = 11/387 (2%)
Query: 72 FDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 131
D + L CA L Q H V K+G + V V AL++MY G + + ++
Sbjct: 109 IDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRI 168
Query: 132 FDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEAL 191
F+E+ E+++V+W V++ +VKW LE R +F EMP RN V+WT ++ GY + E L
Sbjct: 169 FEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVL 228
Query: 192 ALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF------TAFDIRV 245
L +MV + +T+ ++L A Q+G++ + +H Y K+ + D+ V
Sbjct: 229 ELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMV 288
Query: 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305
L+D YAKCG I S+ +F + ++N+V+W ++ SG AMHG G+ ++ F +M +
Sbjct: 289 GTALVDMYAKCGNIDSSMNVFR--LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR- 345
Query: 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
+KP+ +TF +VL+ACSH G+V+EG F + + P + HY C++D+LGRAG +E+
Sbjct: 346 EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEE 404
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
AE +P +VV+ +LLG+CS HG VE+ ER+ R++++M G +LM N+
Sbjct: 405 AEILMREMPVPPNEVVLG-SLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYV 463
Query: 426 GVGRFGDAERLRRVMDERNAFKVPGCS 452
GR A+ LR + +R K+PG S
Sbjct: 464 AEGRSDIADGLRGSLRKRGIRKIPGLS 490
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 148/360 (41%), Gaps = 75/360 (20%)
Query: 79 FLIRTCATLSHPNLGTQLHAVISKVGFQS--HVYVNTALVNMYVSLGFLKDSSKLFDEMP 136
L+R CA S G +LHAV++ G + Y++ AL Y S G + + KLFDE+P
Sbjct: 11 LLLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIP 70
Query: 137 --ERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALF 194
E++ V W +++ ++G L + LF EM + V
Sbjct: 71 LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRV----------------------- 107
Query: 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254
E +++++ + + D+ Q HG K G ++V N L+D Y
Sbjct: 108 ---------EIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLT-SVKVCNALMDMYG 157
Query: 255 KCGCIFSASKLFEDIS-------------------VER----------KNLVSWTSIISG 285
KCG + ++FE++ +ER +N V+WT +++G
Sbjct: 158 KCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAG 217
Query: 286 FAMHGMGKEAVENFGRMQ-KVGLKPNRVTFLSVLNACSHGG--LVEEGLNFF----DKMV 338
+ G +E +E M + G N VT S+L+AC+ G +V ++ + + M+
Sbjct: 218 YLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMM 277
Query: 339 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEM 398
E D+ L+DM + G ++ + + +VV W L + HG M
Sbjct: 278 GEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKR--NVVTWNALFSGLAMHGKGRM 335
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 35/217 (16%)
Query: 247 NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG 306
N L YA G + +A KLF++I + K+ V WT+++S F+ +G+ +++ F M++
Sbjct: 47 NALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKR 106
Query: 307 LKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363
++ + V+ + + C+ G ++G KM VL +K L+DM G+ G +
Sbjct: 107 VEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKM----GVLTSVKVCNALMDMYGKCGLV 162
Query: 364 --------EQAEKTALGIPSEITDVVVWRTL-LGACSFHGNVE-------------MGER 401
E EK+ + + VV W L G FH E +G
Sbjct: 163 SEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAG 222
Query: 402 VTRKILEM------ERGYGGDYVLMYNILAGVGRFGD 432
TR++LE+ G+G ++V + ++L+ + G+
Sbjct: 223 FTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGN 259
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 228/423 (53%), Gaps = 46/423 (10%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N ++ ++ + P AF Y+ + + S S D+ T SF ++ CA +
Sbjct: 71 WNAIIRGFAGSSHPSLAFSWYRSM--LQQSSSSSAICRVDALTCSFTLKACARALCSSAM 128
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
QLH I++ G + + T L++ Y K
Sbjct: 129 DQLHCQINRRGLSADSLLCTTLLDAYS-------------------------------KN 157
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G+L A LF+EMP R+V SW +I G NR++EA+ L+++M E SE+T++A
Sbjct: 158 GDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRM-ETEGIRRSEVTVVAA 216
Query: 214 LPAIWQNGDVKSCQ-LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
L A GDVK + + HGY ++ V N ID Y+KCG + A ++FE +
Sbjct: 217 LGACSHLGDVKEGENIFHGYSND------NVIVSNAAIDMYSKCGFVDKAYQVFEQFT-G 269
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
+K++V+W ++I+GFA+HG A+E F +++ G+KP+ V++L+ L AC H GLVE GL+
Sbjct: 270 KKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLS 329
Query: 333 FFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F+ M C+ V ++KHYGC++D+L RAGRL +A + S I D V+W++LLGA
Sbjct: 330 VFNNMA--CKGVERNMKHYGCVVDLLSRAGRLREAHDIICSM-SMIPDPVLWQSLLGASE 386
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
+ +VEM E +R+I EM GD+VL+ N+ A GR+ D R+R M+ + K+PG
Sbjct: 387 IYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGL 446
Query: 452 SLV 454
S +
Sbjct: 447 SYI 449
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 24/264 (9%)
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS------ 206
+G+L FA +F +P W II G+ + + A + +R M+ + +
Sbjct: 50 FGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDA 109
Query: 207 ---EITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262
T+ A A+ + D CQ+ +RG +A D + L+D Y+K G + SA
Sbjct: 110 LTCSFTLKACARALCSSAMDQLHCQI-----NRRGLSA-DSLLCTTLLDAYSKNGDLISA 163
Query: 263 SKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322
KLF+++ V +++ SW ++I+G EA+E + RM+ G++ + VT ++ L ACS
Sbjct: 164 YKLFDEMPV--RDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACS 221
Query: 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV 382
H G V+EG N F + ++ + IDM + G +++A + + + VV
Sbjct: 222 HLGDVKEGENIFHGYSNDNVIVSN-----AAIDMYSKCGFVDKAYQVFEQFTGKKS-VVT 275
Query: 383 WRTLLGACSFHGNVEMGERVTRKI 406
W T++ + HG + K+
Sbjct: 276 WNTMITGFAVHGEAHRALEIFDKL 299
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 154/500 (30%), Positives = 246/500 (49%), Gaps = 90/500 (18%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
++N+++ YS + +P KA + Y Q++ +SP D FT+ ++++ C+ L
Sbjct: 74 IWNSMIRGYSNSPNPDKALIFY---QEMLRKGYSP-----DYFTFPYVLKACSGLRDIQF 125
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G+ +H + K GF+ ++YV+T L++MY+ G + ++F+++P+ N+V W +I+G V
Sbjct: 126 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN 185
Query: 153 WGELEFARSLFEEMP--------------------CRNVVS--W---------------- 174
A F EM C+++V+ W
Sbjct: 186 NNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQS 245
Query: 175 ---------TGIIDGYTRMNRSNEALALF-----RKMVA------------------CEY 202
T +ID Y + A LF R +V+ C +
Sbjct: 246 KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 305
Query: 203 TE-------PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255
+ P ++T L+V+ A G + Q IH Y K GF D ++ L++ YAK
Sbjct: 306 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVK-DAAIVCALVNMYAK 364
Query: 256 CGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTF 314
G SA K FED+ E+K+ ++WT +I G A HG G EA+ F RMQ+ G P+ +T+
Sbjct: 365 TGDAESAKKAFEDL--EKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITY 422
Query: 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374
L VL ACSH GLVEEG +F +M + + P ++HYGC++D+L RAGR E+AE+ +P
Sbjct: 423 LGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMP 482
Query: 375 SEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434
+ +V +W LL C H N+E+ +R+ + E E G YVL+ NI A GR+ D +
Sbjct: 483 VK-PNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVK 541
Query: 435 RLRRVMDERNAFKVPGCSLV 454
+R M + KV G S V
Sbjct: 542 LIRESMKSKRVDKVLGHSSV 561
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 15/250 (6%)
Query: 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215
L +ARS+FE + C +V W +I GY+ ++AL +++M+ Y+ P T VL
Sbjct: 57 LSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLK 115
Query: 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275
A D++ +HG+ K GF ++ V CL+ Y CG + ++FEDI + N
Sbjct: 116 ACSGLRDIQFGSCVHGFVVKTGFEV-NMYVSTCLLHMYMCCGEVNYGLRVFEDIP--QWN 172
Query: 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF-- 333
+V+W S+ISGF + +A+E F MQ G+K N + +L AC + G F
Sbjct: 173 VVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHG 232
Query: 334 ------FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLL 387
FD + +V ++ LIDM + G L A G+P +V W +++
Sbjct: 233 FLQGLGFDPYFQS-KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERT--LVSWNSII 289
Query: 388 GACSFHGNVE 397
S +G+ E
Sbjct: 290 TGYSQNGDAE 299
>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing protein At1g03510
OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1
Length = 429
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 216/401 (53%), Gaps = 7/401 (1%)
Query: 54 YKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT 113
++Q ++ HS D+ +S +++CA P LG +HA K F S+ +V
Sbjct: 28 HEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNPFVGC 87
Query: 114 ALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR-NVV 172
AL++MY + + KLFDE+P+RN V WN MI+ G+++ A L+E M N
Sbjct: 88 ALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNES 147
Query: 173 SWTGIIDGYTRM-NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHG 231
S+ II G + S A+ +RKM+ + +P+ IT+LA++ A G + + IH
Sbjct: 148 SFNAIIKGLVGTEDGSYRAIEFYRKMIEFRF-KPNLITLLALVSACSAIGAFRLIKEIHS 206
Query: 232 YGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGM 291
Y R ++ + L++ Y +CG I +F+ S+E +++V+W+S+IS +A+HG
Sbjct: 207 YA-FRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFD--SMEDRDVVAWSSLISAYALHGD 263
Query: 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG 351
+ A++ F M+ + P+ + FL+VL ACSH GL +E L +F +M + + HY
Sbjct: 264 AESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYS 323
Query: 352 CLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411
CL+D+L R GR E+A K +P + T W LLGAC +G +E+ E R++L +E
Sbjct: 324 CLVDVLSRVGRFEEAYKVIQAMPEKPT-AKTWGALLGACRNYGEIELAEIAARELLMVEP 382
Query: 412 GYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
+YVL+ I VGR +AERLR M E PG S
Sbjct: 383 ENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423
>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970
OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 192/318 (60%), Gaps = 17/318 (5%)
Query: 151 VKWGELEFARSLFEEMPCRNVVSWTGIIDGY-TRMNRSN----EALALFRKMVAC-EYTE 204
K G+L +AR +F+EMP R V+W +I GY + ++ N +A+ LFR+ C
Sbjct: 158 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVR 217
Query: 205 PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGCIFSAS 263
P++ T++ VL AI Q G ++ L+HGY EK GFT D+ + L+D Y+KCGC+ +A
Sbjct: 218 PTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAF 277
Query: 264 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323
+FE + V KN+ +WTS+ +G A++G G E RM + G+KPN +TF S+L+A H
Sbjct: 278 SVFELMKV--KNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRH 335
Query: 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW 383
GLVEEG+ F M V P I+HYGC++D+LG+AGR+++A + L +P + D ++
Sbjct: 336 IGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIK-PDAILL 394
Query: 384 RTLLGACSFHGNVEMGERVTRKILEMER-------GYGGDYVLMYNILAGVGRFGDAERL 436
R+L ACS +G MGE + + +LE+ER DYV + N+LA G++ + E+L
Sbjct: 395 RSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKL 454
Query: 437 RRVMDERNAFKVPGCSLV 454
R+ M ER PG S V
Sbjct: 455 RKEMKERRIKTRPGYSFV 472
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 218/391 (55%), Gaps = 8/391 (2%)
Query: 66 SPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125
S L P D FT + ++ CA L +G Q+H+ I GF V AL++MY G +
Sbjct: 273 SLLSP--DRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 126 KDSSKLFDEMPERNLVT--WNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTR 183
+ + +L ++ ++L + ++ G +K G++ A+++F + R+VV+WT +I GY +
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390
Query: 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243
EA+ LFR MV P+ T+ A+L + + IHG K G + +
Sbjct: 391 HGSYGEAINLFRSMVGGG-QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG-EIYSV 448
Query: 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQ 303
V N LI YAK G I SAS+ F+ I ER + VSWTS+I A HG +EA+E F M
Sbjct: 449 SVSNALITMYAKAGNITSASRAFDLIRCER-DTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363
GL+P+ +T++ V +AC+H GLV +G +FD M + +++P + HY C++D+ GRAG L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 364 EQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423
++A++ +P E DVV W +LL AC H N+++G+ ++L +E G Y + N+
Sbjct: 568 QEAQEFIEKMPIE-PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANL 626
Query: 424 LAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+ G++ +A ++R+ M + K G S +
Sbjct: 627 YSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 165/354 (46%), Gaps = 34/354 (9%)
Query: 75 FTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 134
FT + ++ + A G ++H+ I K+G + +V V+ +L+NMY G + +FD
Sbjct: 147 FTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDR 206
Query: 135 MPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALF 194
M R++ +WN MI ++ G+++ A + FE+M R++V+W +I G+ + AL +F
Sbjct: 207 MVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIF 266
Query: 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254
KM+ P T+ +VL A + + IH + GF I VLN LI Y+
Sbjct: 267 SKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGI-VLNALISMYS 325
Query: 255 KCGCIFSASKLFED-------------------------------ISVERKNLVSWTSII 283
+CG + +A +L E +S++ +++V+WT++I
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMI 385
Query: 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV 343
G+ HG EA+ F M G +PN T ++L+ S + G V+ E+
Sbjct: 386 VGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEI 445
Query: 344 LPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVE 397
+ LI M +AG + A + I E D V W +++ A + HG+ E
Sbjct: 446 YS-VSVSNALITMYAKAGNITSASRAFDLIRCE-RDTVSWTSMIIALAQHGHAE 497
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 176/400 (44%), Gaps = 79/400 (19%)
Query: 66 SPLPPLFDSFTYSFLIRTCATL-------SHPNLGTQL-HAVISKVGFQSHVYVNTALVN 117
+P+P + S L+ C L S+ QL H + K G VY+ L+N
Sbjct: 3 APVP-----LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMN 57
Query: 118 MYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGI 177
+Y G+ + KLFDEMP R +WN +++ K G+++ F+++P R+ VSWT +
Sbjct: 58 VYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTM 117
Query: 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG 237
I GY + + ++A+ + MV E EP++ T+ VL ++ +++ + +H + K G
Sbjct: 118 IVGYKNIGQYHKAIRVMGDMVK-EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLG 176
Query: 238 FTAFDIRVLNCLIDTYAKCGCIFSASKLFE-----DIS---------------------- 270
++ V N L++ YAKCG A +F+ DIS
Sbjct: 177 LRG-NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQF 235
Query: 271 --VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACS----- 322
+ +++V+W S+ISGF G A++ F +M + L P+R T SVL+AC+
Sbjct: 236 EQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKL 295
Query: 323 ------HGGLVEEG-------LNFFDKMVEECEVLP--------------DIKHYGCLID 355
H +V G LN M C + I+ + L+D
Sbjct: 296 CIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLD 355
Query: 356 MLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN 395
+ G + QA+ + + DVV W ++ HG+
Sbjct: 356 GYIKLGDMNQAKNIFVSLKDR--DVVAWTAMIVGYEQHGS 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,856,836
Number of Sequences: 539616
Number of extensions: 6927476
Number of successful extensions: 20868
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 14376
Number of HSP's gapped (non-prelim): 1940
length of query: 454
length of database: 191,569,459
effective HSP length: 121
effective length of query: 333
effective length of database: 126,275,923
effective search space: 42049882359
effective search space used: 42049882359
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)