Query 012879
Match_columns 454
No_of_seqs 573 out of 2490
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 07:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-66 2.2E-71 511.2 43.0 428 9-454 137-568 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 8.1E-64 1.8E-68 502.2 44.3 428 7-454 300-731 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.8E-61 1E-65 474.0 45.3 428 8-449 383-847 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-60 4.7E-65 469.3 46.1 430 7-450 449-916 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 9.7E-60 2.1E-64 472.7 43.0 420 8-449 200-625 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-55 4.8E-60 431.3 37.7 393 29-440 85-488 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.6E-31 2.1E-35 268.6 43.8 416 7-443 443-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-30 8.4E-35 264.2 44.4 416 7-442 477-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 4.3E-24 9.3E-29 189.3 31.1 385 30-434 115-510 (966)
10 PRK11447 cellulose synthase su 99.9 7.1E-23 1.5E-27 211.5 44.7 414 7-442 281-739 (1157)
11 PRK11447 cellulose synthase su 99.9 1.7E-22 3.8E-27 208.6 42.5 422 7-445 159-702 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 5.1E-22 1.1E-26 192.9 41.6 397 32-444 128-572 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 7.6E-24 1.6E-28 187.8 25.2 401 34-447 51-489 (966)
14 PRK11788 tetratricopeptide rep 99.9 2.1E-22 4.5E-27 186.1 31.2 298 36-348 40-354 (389)
15 PRK11788 tetratricopeptide rep 99.9 6.6E-22 1.4E-26 182.8 32.3 289 119-412 45-350 (389)
16 PRK15174 Vi polysaccharide exp 99.9 8.9E-21 1.9E-25 183.7 38.1 331 31-379 42-384 (656)
17 PRK15174 Vi polysaccharide exp 99.9 1.7E-20 3.7E-25 181.7 37.6 386 41-440 15-417 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.1E-20 2.3E-25 187.0 36.0 402 29-445 13-458 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-19 5.7E-24 174.1 41.1 385 8-413 140-575 (615)
20 PRK10049 pgaA outer membrane p 99.9 2.3E-19 5.1E-24 177.6 41.2 394 6-416 26-463 (765)
21 PRK09782 bacteriophage N4 rece 99.9 4.7E-19 1E-23 175.7 42.8 415 7-444 56-707 (987)
22 PRK14574 hmsH outer membrane p 99.9 2E-17 4.4E-22 161.0 40.2 397 34-443 38-513 (822)
23 PRK09782 bacteriophage N4 rece 99.9 4.6E-17 1E-21 161.7 43.4 394 29-447 179-744 (987)
24 PRK14574 hmsH outer membrane p 99.9 2.5E-17 5.4E-22 160.4 40.3 398 3-416 42-520 (822)
25 KOG2003 TPR repeat-containing 99.8 7.2E-17 1.6E-21 138.9 27.7 380 37-430 243-710 (840)
26 KOG2002 TPR-containing nuclear 99.8 2.3E-15 4.9E-20 141.3 36.4 423 8-447 143-597 (1018)
27 KOG2002 TPR-containing nuclear 99.8 4.5E-16 9.7E-21 145.9 30.9 419 14-443 255-709 (1018)
28 KOG1915 Cell cycle control pro 99.8 1.1E-14 2.3E-19 126.3 34.9 407 30-451 72-508 (677)
29 KOG0547 Translocase of outer m 99.7 7.3E-15 1.6E-19 127.8 28.8 394 30-441 114-564 (606)
30 PF13429 TPR_15: Tetratricopep 99.7 3E-18 6.5E-23 150.1 7.7 260 176-442 13-276 (280)
31 KOG2076 RNA polymerase III tra 99.7 1.2E-14 2.6E-19 135.6 30.8 334 115-453 145-522 (895)
32 KOG1915 Cell cycle control pro 99.7 1.6E-13 3.5E-18 119.1 32.0 417 8-445 86-538 (677)
33 KOG0495 HAT repeat protein [RN 99.7 1.3E-12 2.8E-17 118.0 37.1 415 13-445 424-882 (913)
34 PF13429 TPR_15: Tetratricopep 99.7 1.9E-16 4.1E-21 138.8 12.9 257 79-339 13-276 (280)
35 PRK10747 putative protoheme IX 99.7 1E-13 2.3E-18 127.1 31.3 280 122-409 97-390 (398)
36 KOG4422 Uncharacterized conser 99.7 9.8E-13 2.1E-17 113.0 33.1 404 30-448 115-595 (625)
37 KOG2076 RNA polymerase III tra 99.7 1.2E-12 2.5E-17 122.6 35.4 367 29-407 137-553 (895)
38 KOG0495 HAT repeat protein [RN 99.7 5.8E-12 1.3E-16 113.9 37.7 400 15-442 366-781 (913)
39 KOG4422 Uncharacterized conser 99.7 4E-13 8.7E-18 115.3 28.7 353 29-412 205-593 (625)
40 TIGR00540 hemY_coli hemY prote 99.7 4E-13 8.8E-18 123.9 31.2 285 120-409 95-399 (409)
41 KOG1155 Anaphase-promoting com 99.7 1.3E-12 2.7E-17 113.4 30.8 302 87-409 240-553 (559)
42 COG2956 Predicted N-acetylgluc 99.7 4.3E-13 9.4E-18 111.0 26.7 286 123-413 49-351 (389)
43 KOG1126 DNA-binding cell divis 99.7 2.1E-14 4.6E-19 129.8 20.6 283 154-446 333-623 (638)
44 PRK10747 putative protoheme IX 99.7 3.5E-13 7.5E-18 123.6 29.2 276 44-339 97-389 (398)
45 KOG1126 DNA-binding cell divis 99.6 5.8E-14 1.3E-18 127.0 22.8 280 46-339 334-619 (638)
46 TIGR00540 hemY_coli hemY prote 99.6 1.4E-12 3.1E-17 120.3 32.3 282 86-373 96-396 (409)
47 KOG2003 TPR repeat-containing 99.6 1.8E-13 3.9E-18 118.3 23.6 396 35-444 205-690 (840)
48 KOG1155 Anaphase-promoting com 99.6 1.1E-12 2.5E-17 113.7 28.5 328 106-442 161-494 (559)
49 COG2956 Predicted N-acetylgluc 99.6 1.3E-12 2.8E-17 108.2 26.4 280 44-340 48-347 (389)
50 KOG0547 Translocase of outer m 99.6 1.9E-11 4.2E-16 106.9 29.0 384 10-412 130-569 (606)
51 COG3071 HemY Uncharacterized e 99.6 3E-11 6.5E-16 103.3 29.2 280 122-409 97-390 (400)
52 KOG1173 Anaphase-promoting com 99.5 1.4E-11 2.9E-16 109.8 27.1 396 31-443 49-518 (611)
53 TIGR02521 type_IV_pilW type IV 99.5 2.1E-12 4.6E-17 110.4 21.9 201 242-443 30-232 (234)
54 PRK12370 invasion protein regu 99.5 6.3E-12 1.4E-16 120.5 27.1 266 170-444 255-536 (553)
55 COG3071 HemY Uncharacterized e 99.5 3.3E-11 7.2E-16 103.1 27.5 294 32-346 87-395 (400)
56 KOG4318 Bicoid mRNA stability 99.5 1.1E-11 2.4E-16 115.8 25.7 275 52-362 11-286 (1088)
57 KOG1129 TPR repeat-containing 99.5 1.5E-12 3.3E-17 108.0 17.6 231 175-412 227-461 (478)
58 KOG4162 Predicted calmodulin-b 99.5 2E-10 4.3E-15 106.2 30.9 399 27-445 319-785 (799)
59 KOG1129 TPR repeat-containing 99.5 4.8E-12 1E-16 105.1 17.0 227 211-443 227-458 (478)
60 KOG1156 N-terminal acetyltrans 99.5 9.4E-10 2E-14 99.9 32.6 393 33-445 10-470 (700)
61 TIGR02521 type_IV_pilW type IV 99.5 3.5E-11 7.6E-16 102.8 23.2 198 172-408 32-231 (234)
62 KOG4318 Bicoid mRNA stability 99.4 3.4E-10 7.4E-15 106.1 29.3 100 348-447 492-598 (1088)
63 PRK12370 invasion protein regu 99.4 2.5E-11 5.4E-16 116.4 22.7 261 139-411 255-537 (553)
64 KOG1173 Anaphase-promoting com 99.4 5.3E-10 1.2E-14 99.9 27.5 281 139-424 243-533 (611)
65 PRK11189 lipoprotein NlpI; Pro 99.4 2.5E-10 5.5E-15 100.3 25.4 234 184-426 39-283 (296)
66 KOG1174 Anaphase-promoting com 99.4 2.8E-09 6.1E-14 91.7 30.0 277 138-422 230-513 (564)
67 KOG1840 Kinesin light chain [C 99.4 7.4E-11 1.6E-15 108.0 22.0 234 208-441 200-477 (508)
68 KOG2376 Signal recognition par 99.4 8.8E-10 1.9E-14 99.0 27.9 126 37-174 18-144 (652)
69 PF12569 NARP1: NMDA receptor- 99.4 2.1E-09 4.5E-14 99.9 31.4 291 38-340 11-334 (517)
70 KOG3785 Uncharacterized conser 99.4 8E-10 1.7E-14 93.1 25.6 185 38-236 29-214 (557)
71 KOG1840 Kinesin light chain [C 99.4 1.2E-10 2.7E-15 106.7 22.4 238 172-409 200-479 (508)
72 KOG2047 mRNA splicing factor [ 99.4 9.5E-09 2.1E-13 93.4 33.2 248 7-270 150-452 (835)
73 PF13041 PPR_2: PPR repeat fam 99.4 1.8E-12 3.9E-17 79.9 6.7 50 274-323 1-50 (50)
74 KOG1156 N-terminal acetyltrans 99.3 1.2E-08 2.7E-13 92.8 30.7 363 75-446 9-437 (700)
75 PF12569 NARP1: NMDA receptor- 99.3 1.3E-09 2.9E-14 101.1 24.7 261 178-445 11-293 (517)
76 KOG4340 Uncharacterized conser 99.3 7.8E-09 1.7E-13 85.3 25.3 390 33-442 12-442 (459)
77 COG3063 PilF Tfp pilus assembl 99.3 7.8E-10 1.7E-14 87.9 18.9 196 245-441 37-234 (250)
78 PRK11189 lipoprotein NlpI; Pro 99.3 6.8E-10 1.5E-14 97.6 20.7 217 221-445 40-267 (296)
79 KOG3785 Uncharacterized conser 99.3 7.4E-08 1.6E-12 81.6 30.9 244 10-272 37-314 (557)
80 PF13041 PPR_2: PPR repeat fam 99.3 9.4E-12 2E-16 76.7 5.7 50 29-86 1-50 (50)
81 COG3063 PilF Tfp pilus assembl 99.3 2.9E-09 6.4E-14 84.6 21.0 191 146-339 41-235 (250)
82 KOG1174 Anaphase-promoting com 99.2 1.1E-08 2.4E-13 88.2 24.4 260 73-339 231-499 (564)
83 KOG0624 dsRNA-activated protei 99.2 6.8E-09 1.5E-13 87.3 22.5 301 108-418 37-379 (504)
84 KOG0548 Molecular co-chaperone 99.2 7.5E-08 1.6E-12 86.0 29.5 369 39-426 10-472 (539)
85 cd05804 StaR_like StaR_like; a 99.2 5.3E-08 1.1E-12 89.0 29.8 261 180-444 52-337 (355)
86 KOG2047 mRNA splicing factor [ 99.2 1.6E-07 3.5E-12 85.6 30.8 397 29-442 100-578 (835)
87 KOG1125 TPR repeat-containing 99.2 1.1E-09 2.4E-14 98.2 16.8 221 216-443 294-527 (579)
88 PF04733 Coatomer_E: Coatomer 99.2 3.2E-09 6.9E-14 92.0 18.8 250 150-414 11-270 (290)
89 KOG2376 Signal recognition par 99.2 3.5E-07 7.6E-12 82.7 31.2 398 12-438 29-515 (652)
90 KOG0624 dsRNA-activated protei 99.2 1.6E-07 3.6E-12 79.2 27.1 319 29-378 36-372 (504)
91 KOG4162 Predicted calmodulin-b 99.2 3.6E-07 7.8E-12 85.2 31.3 345 102-448 316-754 (799)
92 cd05804 StaR_like StaR_like; a 99.1 9.2E-07 2E-11 80.8 32.4 95 175-271 118-214 (355)
93 PF04733 Coatomer_E: Coatomer 99.1 3E-08 6.5E-13 86.0 20.7 221 111-339 37-264 (290)
94 KOG0548 Molecular co-chaperone 99.1 1.5E-08 3.2E-13 90.4 18.8 362 81-445 9-457 (539)
95 KOG4340 Uncharacterized conser 99.1 5.3E-08 1.2E-12 80.5 20.6 306 112-439 13-335 (459)
96 PRK04841 transcriptional regul 99.1 2.1E-06 4.6E-11 88.7 37.5 324 119-443 384-760 (903)
97 KOG1914 mRNA cleavage and poly 99.1 4.3E-06 9.4E-11 75.1 32.3 405 19-442 10-500 (656)
98 KOG0985 Vesicle coat protein c 99.0 5.7E-06 1.2E-10 79.7 33.7 367 21-434 974-1374(1666)
99 KOG1125 TPR repeat-containing 99.0 3.2E-08 7E-13 89.1 18.0 252 178-437 292-565 (579)
100 KOG1070 rRNA processing protei 99.0 1.7E-07 3.8E-12 92.5 23.8 235 90-330 1441-1690(1710)
101 KOG3617 WD40 and TPR repeat-co 99.0 4.9E-07 1.1E-11 84.9 25.3 259 29-338 724-994 (1416)
102 KOG3617 WD40 and TPR repeat-co 99.0 2E-06 4.3E-11 81.0 28.7 213 28-271 754-995 (1416)
103 KOG1070 rRNA processing protei 99.0 3.6E-07 7.9E-12 90.4 23.5 250 186-439 1440-1696(1710)
104 KOG0985 Vesicle coat protein c 98.9 5.1E-06 1.1E-10 80.0 29.2 241 169-439 982-1245(1666)
105 TIGR03302 OM_YfiO outer membra 98.9 2.7E-07 5.8E-12 78.8 19.6 185 241-444 31-233 (235)
106 KOG3616 Selective LIM binding 98.9 1.7E-06 3.6E-11 80.5 24.2 284 114-438 620-932 (1636)
107 PLN02789 farnesyltranstransfer 98.9 4.9E-07 1.1E-11 79.5 20.3 165 259-426 88-267 (320)
108 KOG3616 Selective LIM binding 98.9 2.3E-06 5E-11 79.6 24.6 313 35-404 593-932 (1636)
109 COG5010 TadD Flp pilus assembl 98.9 2.4E-07 5.1E-12 75.6 15.8 155 247-404 70-226 (257)
110 KOG1128 Uncharacterized conser 98.9 1.4E-07 3E-12 87.4 16.0 223 204-445 395-618 (777)
111 KOG1128 Uncharacterized conser 98.8 1.7E-06 3.7E-11 80.4 22.9 228 143-390 401-633 (777)
112 PLN02789 farnesyltranstransfer 98.8 5.2E-06 1.1E-10 73.1 25.3 208 178-392 44-267 (320)
113 PRK10370 formate-dependent nit 98.8 2.5E-07 5.5E-12 75.8 15.8 153 250-415 23-179 (198)
114 TIGR03302 OM_YfiO outer membra 98.8 7.7E-07 1.7E-11 76.0 18.4 184 171-376 33-232 (235)
115 PRK15179 Vi polysaccharide bio 98.8 7.3E-07 1.6E-11 86.5 19.7 134 275-412 85-220 (694)
116 PRK10370 formate-dependent nit 98.8 8.3E-07 1.8E-11 72.7 17.2 116 185-304 53-172 (198)
117 PRK14720 transcript cleavage f 98.8 3.2E-06 6.9E-11 83.0 23.5 240 139-432 30-273 (906)
118 PRK04841 transcriptional regul 98.8 3.1E-05 6.7E-10 80.2 32.5 370 32-412 342-763 (903)
119 KOG3081 Vesicle coat complex C 98.8 2.4E-06 5.3E-11 69.8 18.7 249 149-412 17-274 (299)
120 PRK15359 type III secretion sy 98.8 2.7E-07 5.9E-12 71.5 13.0 124 297-426 14-138 (144)
121 KOG1127 TPR repeat-containing 98.8 2.6E-06 5.7E-11 81.8 21.7 377 47-439 474-909 (1238)
122 KOG3081 Vesicle coat complex C 98.8 7.8E-06 1.7E-10 67.0 21.2 106 322-431 148-258 (299)
123 PRK15359 type III secretion sy 98.7 1.5E-07 3.3E-12 72.8 10.6 111 331-446 13-124 (144)
124 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.9E-13 55.6 3.9 34 103-136 1-34 (34)
125 COG4783 Putative Zn-dependent 98.7 2.3E-05 4.9E-10 70.0 24.1 195 124-340 252-454 (484)
126 COG5010 TadD Flp pilus assembl 98.7 7.5E-06 1.6E-10 67.1 19.6 161 211-376 70-231 (257)
127 KOG1127 TPR repeat-containing 98.7 1.2E-05 2.6E-10 77.5 23.2 398 31-442 492-951 (1238)
128 PF12854 PPR_1: PPR repeat 98.7 4.4E-08 9.5E-13 54.1 4.2 32 342-373 2-33 (34)
129 PRK14720 transcript cleavage f 98.6 1.2E-05 2.5E-10 79.2 22.8 218 28-287 28-268 (906)
130 COG4783 Putative Zn-dependent 98.6 1.6E-05 3.5E-10 70.9 21.5 154 245-418 308-463 (484)
131 KOG2053 Mitochondrial inherita 98.6 0.00094 2E-08 64.3 35.9 388 42-448 20-507 (932)
132 KOG3060 Uncharacterized conser 98.6 3.7E-05 8.1E-10 62.6 19.5 170 244-416 53-227 (289)
133 PRK15179 Vi polysaccharide bio 98.5 1.9E-05 4.2E-10 76.8 21.3 144 170-318 85-229 (694)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7E-06 1.5E-10 73.8 14.5 123 145-271 174-296 (395)
135 TIGR02552 LcrH_SycD type III s 98.4 1.5E-06 3.3E-11 66.9 8.8 114 298-415 5-120 (135)
136 TIGR02552 LcrH_SycD type III s 98.4 7.9E-06 1.7E-10 62.9 12.5 114 266-382 6-120 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.7E-06 8E-11 75.5 11.4 122 315-441 173-295 (395)
138 PF09976 TPR_21: Tetratricopep 98.4 3.8E-05 8.3E-10 59.7 15.4 117 289-406 24-144 (145)
139 KOG3060 Uncharacterized conser 98.3 5.9E-05 1.3E-09 61.5 15.9 185 257-445 26-222 (289)
140 KOG2053 Mitochondrial inherita 98.3 0.00069 1.5E-08 65.2 24.2 225 182-413 20-259 (932)
141 PF09976 TPR_21: Tetratricopep 98.3 7.3E-05 1.6E-09 58.2 14.7 86 215-300 56-142 (145)
142 PRK15363 pathogenicity island 98.2 6.7E-06 1.4E-10 62.7 7.7 91 353-443 41-132 (157)
143 TIGR00756 PPR pentatricopeptid 98.2 3E-06 6.6E-11 47.5 4.3 33 278-310 2-34 (35)
144 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.004 8.6E-08 55.5 25.7 130 312-443 398-531 (660)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.5E-05 3.2E-10 59.8 9.3 103 313-415 4-111 (119)
146 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.3E-11 46.9 4.2 33 277-309 2-34 (34)
147 KOG0550 Molecular chaperone (D 98.2 5.8E-05 1.3E-09 65.9 13.3 157 284-446 177-353 (486)
148 cd00189 TPR Tetratricopeptide 98.2 8.1E-06 1.8E-10 58.2 7.4 94 350-443 3-97 (100)
149 PF12895 Apc3: Anaphase-promot 98.1 9E-07 1.9E-11 61.5 1.5 81 324-405 2-83 (84)
150 KOG1914 mRNA cleavage and poly 98.1 0.0063 1.4E-07 55.6 34.8 412 10-437 34-533 (656)
151 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.3E-05 9.2E-10 57.3 10.8 92 352-443 7-105 (119)
152 PLN03088 SGT1, suppressor of 98.0 9.9E-06 2.1E-10 73.1 6.5 109 317-427 8-117 (356)
153 KOG1130 Predicted G-alpha GTPa 98.0 3.6E-05 7.7E-10 67.1 9.4 266 33-304 17-343 (639)
154 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 45.1 4.4 34 172-206 1-34 (35)
155 KOG0550 Molecular chaperone (D 98.0 0.0012 2.5E-08 58.1 18.3 54 82-136 57-110 (486)
156 PF13414 TPR_11: TPR repeat; P 98.0 8.3E-06 1.8E-10 54.2 4.3 66 379-444 2-68 (69)
157 PF13812 PPR_3: Pentatricopept 98.0 9.7E-06 2.1E-10 45.0 3.9 33 31-66 1-33 (34)
158 KOG0553 TPR repeat-containing 98.0 5.3E-05 1.1E-09 63.5 9.2 107 321-429 91-198 (304)
159 PRK15363 pathogenicity island 98.0 0.00052 1.1E-08 52.6 13.8 103 242-345 34-137 (157)
160 PRK10866 outer membrane biogen 98.0 0.0012 2.6E-08 56.1 17.6 182 242-441 31-239 (243)
161 cd00189 TPR Tetratricopeptide 98.0 0.00013 2.9E-09 51.7 10.5 91 175-269 4-94 (100)
162 PLN03088 SGT1, suppressor of 98.0 0.00011 2.4E-09 66.5 11.8 103 282-387 8-110 (356)
163 PF12895 Apc3: Anaphase-promot 98.0 3.1E-05 6.7E-10 53.7 6.5 82 184-268 2-83 (84)
164 PF14938 SNAP: Soluble NSF att 98.0 0.0016 3.5E-08 57.1 18.5 155 222-376 89-266 (282)
165 PF14938 SNAP: Soluble NSF att 97.9 0.00091 2E-08 58.6 16.9 174 31-235 35-224 (282)
166 KOG2041 WD40 repeat protein [G 97.9 0.0023 5E-08 60.0 19.5 199 73-301 691-903 (1189)
167 PF05843 Suf: Suppressor of fo 97.9 0.00031 6.8E-09 61.2 13.4 133 277-412 2-139 (280)
168 PRK10153 DNA-binding transcrip 97.9 0.00068 1.5E-08 64.2 16.4 140 274-415 335-488 (517)
169 COG3898 Uncharacterized membra 97.9 0.013 2.9E-07 51.3 26.8 249 153-409 133-392 (531)
170 PF13432 TPR_16: Tetratricopep 97.9 1.1E-05 2.3E-10 52.9 3.2 57 387-443 4-60 (65)
171 COG4700 Uncharacterized protei 97.9 0.0047 1E-07 48.2 17.5 57 282-338 95-151 (251)
172 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.017 3.6E-07 51.8 29.5 133 277-412 398-534 (660)
173 COG3898 Uncharacterized membra 97.9 0.015 3.2E-07 51.1 23.7 285 143-443 85-392 (531)
174 PRK02603 photosystem I assembl 97.9 0.00039 8.4E-09 55.9 12.5 134 29-186 33-166 (172)
175 PRK02603 photosystem I assembl 97.9 0.00046 1E-08 55.5 12.6 132 275-430 34-167 (172)
176 PF13432 TPR_16: Tetratricopep 97.8 3.9E-05 8.5E-10 50.2 5.0 61 353-413 3-64 (65)
177 COG4700 Uncharacterized protei 97.8 0.0022 4.7E-08 50.0 14.7 135 307-443 85-222 (251)
178 PF01535 PPR: PPR repeat; Int 97.8 2.8E-05 6.1E-10 42.0 3.5 29 278-306 2-30 (31)
179 COG4235 Cytochrome c biogenesi 97.8 0.00019 4.2E-09 60.6 9.9 106 345-450 154-263 (287)
180 PF04840 Vps16_C: Vps16, C-ter 97.8 0.021 4.6E-07 50.5 25.5 107 313-437 179-285 (319)
181 PF05843 Suf: Suppressor of fo 97.8 0.0008 1.7E-08 58.7 13.9 128 173-304 3-135 (280)
182 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 41.7 3.3 30 32-64 1-30 (31)
183 PF08579 RPM2: Mitochondrial r 97.8 0.00059 1.3E-08 48.4 10.0 77 282-359 31-116 (120)
184 CHL00033 ycf3 photosystem I as 97.8 0.00088 1.9E-08 53.6 12.6 62 315-376 39-101 (168)
185 PF12688 TPR_5: Tetratrico pep 97.7 0.0023 5.1E-08 47.2 13.5 57 178-235 8-66 (120)
186 PF04840 Vps16_C: Vps16, C-ter 97.7 0.027 5.9E-07 49.8 27.9 104 282-404 183-286 (319)
187 PF14559 TPR_19: Tetratricopep 97.7 2.3E-05 5.1E-10 51.8 2.8 55 391-445 2-56 (68)
188 PF10037 MRP-S27: Mitochondria 97.7 0.00049 1.1E-08 62.5 11.8 107 243-350 66-176 (429)
189 PF10037 MRP-S27: Mitochondria 97.7 0.00032 6.8E-09 63.7 10.6 119 29-153 64-186 (429)
190 CHL00033 ycf3 photosystem I as 97.7 0.00018 3.8E-09 57.7 8.3 112 328-439 16-138 (168)
191 KOG1130 Predicted G-alpha GTPa 97.7 0.00038 8.1E-09 61.0 10.5 257 83-340 26-344 (639)
192 PF14559 TPR_19: Tetratricopep 97.7 0.00025 5.4E-09 46.8 7.3 59 219-279 3-61 (68)
193 PF13525 YfiO: Outer membrane 97.7 0.0013 2.8E-08 54.5 13.0 169 248-434 10-198 (203)
194 PRK10866 outer membrane biogen 97.7 0.0097 2.1E-07 50.6 18.5 168 217-406 42-238 (243)
195 PRK10153 DNA-binding transcrip 97.7 0.003 6.4E-08 59.9 16.7 63 242-304 419-481 (517)
196 PF13371 TPR_9: Tetratricopept 97.7 0.00011 2.4E-09 49.4 5.3 58 388-445 3-60 (73)
197 KOG2796 Uncharacterized conser 97.7 0.0026 5.7E-08 52.5 13.8 135 278-413 179-319 (366)
198 PF07079 DUF1347: Protein of u 97.6 0.044 9.5E-07 49.3 28.7 61 381-442 461-523 (549)
199 PRK10803 tol-pal system protei 97.6 0.00026 5.5E-09 60.6 7.9 102 313-414 145-251 (263)
200 KOG0553 TPR repeat-containing 97.6 0.0011 2.3E-08 55.9 11.1 101 179-283 89-189 (304)
201 KOG2796 Uncharacterized conser 97.5 0.0081 1.7E-07 49.7 14.7 165 140-305 136-315 (366)
202 PF08579 RPM2: Mitochondrial r 97.5 0.001 2.3E-08 47.2 8.4 79 35-121 29-116 (120)
203 PF12688 TPR_5: Tetratrico pep 97.5 0.0042 9.1E-08 45.9 12.0 90 283-372 8-100 (120)
204 PF13414 TPR_11: TPR repeat; P 97.5 0.00077 1.7E-08 44.6 7.4 61 209-271 5-66 (69)
205 KOG1538 Uncharacterized conser 97.5 0.018 3.8E-07 54.0 17.8 87 312-408 748-845 (1081)
206 PF06239 ECSIT: Evolutionarily 97.5 0.0021 4.4E-08 51.8 10.5 99 264-363 35-154 (228)
207 KOG2041 WD40 repeat protein [G 97.5 0.048 1E-06 51.7 20.5 252 125-412 679-955 (1189)
208 PRK15331 chaperone protein Sic 97.4 0.0019 4.2E-08 49.8 9.7 84 359-442 49-133 (165)
209 COG4235 Cytochrome c biogenesi 97.4 0.0094 2E-07 50.7 14.4 100 239-339 152-255 (287)
210 PRK10803 tol-pal system protei 97.4 0.0023 5.1E-08 54.8 10.9 85 358-442 154-245 (263)
211 PF13371 TPR_9: Tetratricopept 97.3 0.00053 1.1E-08 46.0 4.9 62 355-416 3-65 (73)
212 PF06239 ECSIT: Evolutionarily 97.3 0.0095 2.1E-07 48.1 12.4 105 204-326 44-153 (228)
213 PF07079 DUF1347: Protein of u 97.3 0.13 2.9E-06 46.3 29.5 383 7-406 18-521 (549)
214 PF13525 YfiO: Outer membrane 97.2 0.024 5.3E-07 46.9 15.1 60 38-103 12-71 (203)
215 PF12921 ATP13: Mitochondrial 97.2 0.0058 1.3E-07 45.6 10.2 54 305-358 46-99 (126)
216 COG4105 ComL DNA uptake lipopr 97.2 0.045 9.8E-07 45.6 16.1 175 246-440 37-230 (254)
217 PF03704 BTAD: Bacterial trans 97.2 0.0095 2.1E-07 46.4 12.0 70 245-314 64-139 (146)
218 KOG0543 FKBP-type peptidyl-pro 97.2 0.0024 5.2E-08 56.3 8.7 96 348-443 258-355 (397)
219 PF13428 TPR_14: Tetratricopep 97.1 0.0007 1.5E-08 40.0 3.4 42 381-422 2-43 (44)
220 PF13281 DUF4071: Domain of un 97.1 0.036 7.8E-07 49.6 15.2 166 244-412 142-337 (374)
221 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0018 3.8E-08 58.5 6.9 101 345-448 73-179 (453)
222 PF13424 TPR_12: Tetratricopep 97.0 0.00086 1.9E-08 45.6 3.6 25 383-407 49-73 (78)
223 PF03704 BTAD: Bacterial trans 97.0 0.0043 9.4E-08 48.3 7.8 69 381-449 63-136 (146)
224 KOG2114 Vacuolar assembly/sort 96.9 0.48 1.1E-05 46.3 23.7 143 36-197 373-516 (933)
225 KOG2280 Vacuolar assembly/sort 96.9 0.46 1E-05 45.8 28.8 111 311-438 684-794 (829)
226 PRK11619 lytic murein transgly 96.8 0.57 1.2E-05 46.2 29.0 95 124-221 81-177 (644)
227 COG1729 Uncharacterized protei 96.8 0.005 1.1E-07 51.6 7.1 57 386-442 184-243 (262)
228 PF13431 TPR_17: Tetratricopep 96.8 0.0006 1.3E-08 37.4 1.2 32 403-434 2-33 (34)
229 KOG4555 TPR repeat-containing 96.8 0.0046 1E-07 45.1 5.8 91 320-412 52-147 (175)
230 PF13424 TPR_12: Tetratricopep 96.8 0.0035 7.5E-08 42.6 5.1 27 244-270 6-32 (78)
231 PRK15331 chaperone protein Sic 96.7 0.049 1.1E-06 42.2 11.5 89 250-339 44-133 (165)
232 PF10300 DUF3808: Protein of u 96.7 0.08 1.7E-06 50.0 15.5 161 280-443 192-376 (468)
233 COG0457 NrfG FOG: TPR repeat [ 96.7 0.28 6.1E-06 41.3 23.9 225 185-412 37-268 (291)
234 PF10300 DUF3808: Protein of u 96.7 0.2 4.4E-06 47.3 17.4 127 177-305 194-334 (468)
235 COG0457 NrfG FOG: TPR repeat [ 96.6 0.35 7.7E-06 40.7 24.7 223 220-444 36-266 (291)
236 PF13512 TPR_18: Tetratricopep 96.6 0.037 8E-07 41.8 9.7 88 356-443 19-128 (142)
237 KOG2610 Uncharacterized conser 96.6 0.14 3E-06 44.3 14.0 149 256-406 116-273 (491)
238 KOG1585 Protein required for f 96.6 0.18 3.8E-06 41.7 13.9 89 245-334 152-250 (308)
239 KOG1258 mRNA processing protei 96.5 0.72 1.6E-05 43.4 32.7 381 32-428 46-489 (577)
240 PF09205 DUF1955: Domain of un 96.5 0.088 1.9E-06 38.8 10.9 140 287-446 13-152 (161)
241 KOG1538 Uncharacterized conser 96.5 0.18 3.9E-06 47.6 15.5 21 284-304 825-845 (1081)
242 PF13281 DUF4071: Domain of un 96.5 0.25 5.4E-06 44.4 16.1 166 278-444 143-335 (374)
243 KOG0543 FKBP-type peptidyl-pro 96.4 0.0072 1.6E-07 53.4 5.9 66 380-445 257-322 (397)
244 PF12921 ATP13: Mitochondrial 96.4 0.036 7.9E-07 41.4 8.8 93 30-122 1-101 (126)
245 COG3118 Thioredoxin domain-con 96.4 0.34 7.4E-06 41.4 15.3 145 287-433 145-291 (304)
246 KOG1585 Protein required for f 96.4 0.44 9.6E-06 39.4 17.8 205 173-404 33-251 (308)
247 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.11 2.4E-06 47.3 13.2 67 239-305 71-141 (453)
248 PF08631 SPO22: Meiosis protei 96.4 0.61 1.3E-05 40.8 23.4 17 390-406 256-272 (278)
249 smart00299 CLH Clathrin heavy 96.3 0.33 7.1E-06 37.3 14.5 84 79-166 12-95 (140)
250 PF04053 Coatomer_WDAD: Coatom 96.3 0.29 6.4E-06 45.6 15.9 157 148-337 269-428 (443)
251 COG1729 Uncharacterized protei 96.3 0.062 1.4E-06 45.2 10.3 99 174-275 145-247 (262)
252 PF04053 Coatomer_WDAD: Coatom 96.2 0.34 7.4E-06 45.2 16.0 160 81-269 268-428 (443)
253 KOG4234 TPR repeat-containing 96.2 0.0083 1.8E-07 47.5 4.3 102 320-421 104-209 (271)
254 KOG1941 Acetylcholine receptor 96.1 0.098 2.1E-06 45.7 11.0 166 173-338 85-273 (518)
255 PRK11906 transcriptional regul 96.1 0.056 1.2E-06 49.3 9.9 160 277-439 252-432 (458)
256 KOG1941 Acetylcholine receptor 96.0 0.15 3.3E-06 44.6 11.4 123 317-439 128-271 (518)
257 COG4785 NlpI Lipoprotein NlpI, 95.9 0.72 1.6E-05 37.5 15.6 180 223-412 81-269 (297)
258 COG4649 Uncharacterized protei 95.9 0.59 1.3E-05 36.5 14.7 122 219-340 70-196 (221)
259 PF04184 ST7: ST7 protein; In 95.9 1.4 3.1E-05 40.8 20.3 60 316-375 264-323 (539)
260 COG3118 Thioredoxin domain-con 95.9 0.97 2.1E-05 38.8 17.9 142 216-361 143-286 (304)
261 PF08631 SPO22: Meiosis protei 95.9 1.1 2.4E-05 39.2 23.5 19 421-439 253-271 (278)
262 PF09205 DUF1955: Domain of un 95.9 0.49 1.1E-05 35.1 13.0 66 276-343 86-151 (161)
263 PRK09687 putative lyase; Provi 95.8 1.2 2.6E-05 38.9 26.2 32 352-384 240-271 (280)
264 COG1747 Uncharacterized N-term 95.7 1.7 3.6E-05 40.3 18.3 169 202-376 61-234 (711)
265 smart00299 CLH Clathrin heavy 95.7 0.67 1.4E-05 35.6 15.0 124 112-255 10-137 (140)
266 PF02259 FAT: FAT domain; Int 95.7 1.6 3.4E-05 39.8 21.2 150 275-427 145-305 (352)
267 PF10345 Cohesin_load: Cohesin 95.6 2.7 5.8E-05 41.6 28.6 60 382-442 537-605 (608)
268 PF13512 TPR_18: Tetratricopep 95.6 0.45 9.8E-06 36.1 11.2 56 250-305 17-76 (142)
269 KOG2610 Uncharacterized conser 95.5 1.5 3.3E-05 38.3 17.1 154 183-338 115-274 (491)
270 PF07719 TPR_2: Tetratricopept 95.5 0.04 8.6E-07 30.0 4.3 33 381-413 2-34 (34)
271 PF00637 Clathrin: Region in C 95.4 0.055 1.2E-06 41.9 6.4 129 79-222 12-140 (143)
272 PF13428 TPR_14: Tetratricopep 95.4 0.053 1.1E-06 31.8 4.8 41 32-81 2-42 (44)
273 KOG4555 TPR repeat-containing 95.4 0.11 2.4E-06 38.2 7.1 89 285-374 52-142 (175)
274 KOG3941 Intermediate in Toll s 95.4 0.2 4.4E-06 42.3 9.5 99 264-363 55-174 (406)
275 PRK11906 transcriptional regul 95.4 2.1 4.6E-05 39.4 16.7 147 223-372 274-432 (458)
276 PF00515 TPR_1: Tetratricopept 95.2 0.054 1.2E-06 29.5 4.2 32 381-412 2-33 (34)
277 PF02259 FAT: FAT domain; Int 95.2 2.3 5.1E-05 38.6 18.1 64 379-442 145-212 (352)
278 COG3629 DnrI DNA-binding trans 95.2 0.3 6.4E-06 42.0 10.4 79 242-320 152-236 (280)
279 PRK11619 lytic murein transgly 95.2 3.7 8E-05 40.7 37.0 80 354-434 414-496 (644)
280 COG3629 DnrI DNA-binding trans 95.2 0.076 1.6E-06 45.5 6.8 60 383-442 156-215 (280)
281 PF04184 ST7: ST7 protein; In 95.1 1.1 2.5E-05 41.3 14.2 62 175-236 263-324 (539)
282 PF09613 HrpB1_HrpK: Bacterial 95.0 1.3 2.7E-05 34.5 13.6 52 254-305 21-73 (160)
283 COG4649 Uncharacterized protei 94.8 1.4 3.1E-05 34.5 11.9 18 87-104 71-88 (221)
284 PF13176 TPR_7: Tetratricopept 94.8 0.062 1.3E-06 29.8 3.6 28 382-409 1-28 (36)
285 PF10602 RPN7: 26S proteasome 94.6 1.3 2.9E-05 35.5 12.3 95 280-376 40-142 (177)
286 KOG1258 mRNA processing protei 94.6 4.2 9.2E-05 38.6 24.9 127 73-200 44-180 (577)
287 KOG2280 Vacuolar assembly/sort 94.6 4.9 0.00011 39.3 32.2 316 103-442 426-772 (829)
288 KOG1920 IkappaB kinase complex 94.6 6.5 0.00014 40.7 20.5 108 150-271 918-1027(1265)
289 COG2976 Uncharacterized protei 94.3 2.3 4.9E-05 34.2 13.4 114 294-411 70-190 (207)
290 COG4105 ComL DNA uptake lipopr 94.2 2.9 6.4E-05 35.2 19.7 175 218-412 45-236 (254)
291 KOG2114 Vacuolar assembly/sort 94.1 6.7 0.00014 39.0 24.5 117 36-168 402-518 (933)
292 KOG1464 COP9 signalosome, subu 94.0 3.3 7.2E-05 35.0 16.0 223 175-404 69-327 (440)
293 KOG4648 Uncharacterized conser 93.8 0.11 2.3E-06 45.1 4.6 94 318-414 104-199 (536)
294 COG4785 NlpI Lipoprotein NlpI, 93.7 3.2 7E-05 33.9 13.8 29 208-236 238-266 (297)
295 TIGR02561 HrpB1_HrpK type III 93.7 2.4 5.3E-05 32.4 11.7 51 220-272 23-73 (153)
296 PF10602 RPN7: 26S proteasome 93.7 1.5 3.3E-05 35.2 10.9 97 243-339 36-141 (177)
297 KOG4234 TPR repeat-containing 93.7 0.62 1.3E-05 37.3 8.2 92 284-379 103-200 (271)
298 PF13181 TPR_8: Tetratricopept 93.6 0.2 4.4E-06 27.1 4.2 31 382-412 3-33 (34)
299 PF07035 Mic1: Colon cancer-as 93.6 2.9 6.3E-05 33.0 12.7 99 95-197 15-115 (167)
300 COG2909 MalT ATP-dependent tra 93.6 8.9 0.00019 38.5 28.0 219 218-439 426-684 (894)
301 PF09613 HrpB1_HrpK: Bacterial 93.4 2.9 6.4E-05 32.5 12.8 72 215-288 18-89 (160)
302 COG1747 Uncharacterized N-term 93.4 6.9 0.00015 36.6 20.4 176 170-356 65-248 (711)
303 PF13176 TPR_7: Tetratricopept 93.3 0.17 3.8E-06 28.0 3.6 26 33-58 1-26 (36)
304 PRK13800 putative oxidoreducta 93.2 12 0.00027 39.1 26.5 46 136-181 631-676 (897)
305 PF13431 TPR_17: Tetratricopep 92.9 0.14 3E-06 28.0 2.6 25 239-263 9-33 (34)
306 PF13374 TPR_10: Tetratricopep 92.8 0.28 6.1E-06 28.0 4.2 33 31-63 2-34 (42)
307 KOG1586 Protein required for f 92.8 4.9 0.00011 33.4 13.2 100 317-416 119-231 (288)
308 PRK09687 putative lyase; Provi 92.7 6.3 0.00014 34.5 26.4 230 108-357 36-277 (280)
309 KOG0276 Vesicle coat complex C 92.6 2.1 4.5E-05 40.6 11.2 150 151-336 597-746 (794)
310 COG3947 Response regulator con 92.6 6.2 0.00014 34.0 14.3 61 382-442 281-341 (361)
311 KOG3941 Intermediate in Toll s 92.5 1.2 2.7E-05 37.8 8.7 88 169-258 65-173 (406)
312 KOG4648 Uncharacterized conser 92.4 0.33 7.2E-06 42.2 5.5 93 283-379 104-197 (536)
313 PF00637 Clathrin: Region in C 92.3 0.32 7E-06 37.5 5.2 131 35-187 11-141 (143)
314 PF07035 Mic1: Colon cancer-as 92.3 4.6 0.0001 31.9 13.5 127 62-199 22-148 (167)
315 KOG1464 COP9 signalosome, subu 92.1 6.7 0.00015 33.3 17.3 267 73-350 25-340 (440)
316 PF00515 TPR_1: Tetratricopept 92.1 0.44 9.6E-06 25.8 4.2 28 245-272 3-30 (34)
317 PF07719 TPR_2: Tetratricopept 92.0 0.45 9.7E-06 25.6 4.2 28 245-272 3-30 (34)
318 PRK15180 Vi polysaccharide bio 91.6 2 4.4E-05 39.4 9.8 125 286-414 299-425 (831)
319 KOG2063 Vacuolar assembly/sort 91.4 15 0.00032 37.5 16.2 86 356-441 600-711 (877)
320 PF02284 COX5A: Cytochrome c o 91.2 2.2 4.8E-05 30.0 7.5 61 293-355 27-87 (108)
321 PF13170 DUF4003: Protein of u 91.0 10 0.00023 33.4 13.5 48 188-236 79-132 (297)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 91.0 2 4.3E-05 29.9 7.0 63 291-355 22-84 (103)
323 TIGR02561 HrpB1_HrpK type III 91.0 1.1 2.5E-05 34.1 6.4 84 347-430 7-94 (153)
324 KOG1920 IkappaB kinase complex 90.7 24 0.00051 36.9 24.3 112 245-375 941-1054(1265)
325 KOG2066 Vacuolar assembly/sort 90.7 19 0.00041 35.7 23.6 167 81-271 363-533 (846)
326 KOG1550 Extracellular protein 90.5 18 0.0004 35.3 16.2 17 219-235 261-277 (552)
327 KOG4570 Uncharacterized conser 90.5 3.6 7.9E-05 35.7 9.6 97 242-340 63-164 (418)
328 KOG0890 Protein kinase of the 90.1 38 0.00083 38.4 21.7 312 114-445 1388-1733(2382)
329 PF13174 TPR_6: Tetratricopept 90.1 0.45 9.7E-06 25.4 2.9 27 386-412 6-32 (33)
330 KOG0276 Vesicle coat complex C 90.1 5.2 0.00011 38.1 11.0 27 348-374 667-693 (794)
331 PF11207 DUF2989: Protein of u 89.9 2 4.4E-05 34.7 7.4 75 12-93 123-197 (203)
332 PRK15180 Vi polysaccharide bio 89.9 8.7 0.00019 35.6 12.0 122 214-339 296-419 (831)
333 PF10345 Cohesin_load: Cohesin 89.7 23 0.0005 35.2 27.3 180 48-233 38-251 (608)
334 PF13374 TPR_10: Tetratricopep 89.4 0.92 2E-05 25.8 4.1 29 381-409 3-31 (42)
335 KOG0890 Protein kinase of the 89.4 44 0.00095 38.0 23.5 316 79-412 1388-1734(2382)
336 PF13929 mRNA_stabil: mRNA sta 89.1 14 0.00031 32.0 12.9 116 186-301 143-263 (292)
337 KOG4570 Uncharacterized conser 88.7 3.9 8.5E-05 35.5 8.6 99 275-376 63-164 (418)
338 COG2976 Uncharacterized protei 88.7 11 0.00025 30.4 13.0 56 250-305 133-188 (207)
339 PF13762 MNE1: Mitochondrial s 88.6 9.4 0.0002 29.3 10.0 89 31-122 39-128 (145)
340 PF13174 TPR_6: Tetratricopept 88.1 0.81 1.8E-05 24.3 3.0 26 249-274 6-31 (33)
341 PF11207 DUF2989: Protein of u 88.0 5 0.00011 32.6 8.4 21 275-295 177-197 (203)
342 KOG0686 COP9 signalosome, subu 87.7 20 0.00044 32.6 12.5 57 111-167 152-214 (466)
343 PF13170 DUF4003: Protein of u 87.7 19 0.00041 31.8 17.0 130 294-425 80-227 (297)
344 PRK10941 hypothetical protein; 87.4 2.4 5.1E-05 36.6 6.8 63 382-444 183-245 (269)
345 COG5159 RPN6 26S proteasome re 87.0 19 0.00041 31.0 13.0 50 176-226 8-64 (421)
346 PF13181 TPR_8: Tetratricopept 86.5 1.4 3.1E-05 23.6 3.4 26 246-271 4-29 (34)
347 PF06552 TOM20_plant: Plant sp 86.5 15 0.00032 29.3 10.9 72 227-306 55-137 (186)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 6.6 0.00014 27.5 7.0 61 326-387 22-83 (103)
349 KOG1308 Hsp70-interacting prot 86.1 0.56 1.2E-05 41.0 2.3 115 323-440 126-241 (377)
350 PF02284 COX5A: Cytochrome c o 85.5 7.4 0.00016 27.6 7.0 46 226-272 29-74 (108)
351 KOG0545 Aryl-hydrocarbon recep 85.4 0.77 1.7E-05 38.1 2.7 94 319-412 186-296 (329)
352 smart00028 TPR Tetratricopepti 85.2 1.3 2.8E-05 22.8 3.0 28 383-410 4-31 (34)
353 PF07721 TPR_4: Tetratricopept 84.6 2.1 4.5E-05 21.5 3.2 20 114-133 6-25 (26)
354 PF14853 Fis1_TPR_C: Fis1 C-te 84.0 2 4.3E-05 26.3 3.4 33 384-416 5-37 (53)
355 TIGR03504 FimV_Cterm FimV C-te 84.0 1.5 3.2E-05 25.6 2.7 25 419-443 4-28 (44)
356 KOG4507 Uncharacterized conser 83.9 2.5 5.5E-05 39.9 5.5 101 322-425 618-721 (886)
357 PF11817 Foie-gras_1: Foie gra 83.8 26 0.00056 30.1 11.5 23 177-199 16-38 (247)
358 KOG4642 Chaperone-dependent E3 83.3 2.5 5.4E-05 35.1 4.7 89 321-412 20-110 (284)
359 KOG0889 Histone acetyltransfer 83.2 1.1E+02 0.0024 36.7 19.0 148 39-199 2490-2660(3550)
360 COG4455 ImpE Protein of avirul 83.0 6.5 0.00014 32.3 6.8 58 78-136 5-62 (273)
361 TIGR03504 FimV_Cterm FimV C-te 82.8 4 8.6E-05 23.8 4.2 24 282-305 5-28 (44)
362 PRK13800 putative oxidoreducta 82.3 70 0.0015 33.7 26.7 246 73-340 634-881 (897)
363 KOG1550 Extracellular protein 81.7 56 0.0012 32.1 23.2 272 156-443 228-538 (552)
364 KOG0403 Neoplastic transformat 81.3 46 0.00099 30.9 18.2 96 315-414 513-616 (645)
365 PF07163 Pex26: Pex26 protein; 80.9 23 0.00049 30.6 9.5 86 249-334 89-181 (309)
366 COG2909 MalT ATP-dependent tra 80.0 74 0.0016 32.5 27.9 217 119-336 425-684 (894)
367 KOG2034 Vacuolar sorting prote 80.0 73 0.0016 32.4 24.8 70 115-188 364-433 (911)
368 PRK12798 chemotaxis protein; R 79.9 50 0.0011 30.4 20.4 183 256-442 125-323 (421)
369 PF14561 TPR_20: Tetratricopep 79.5 3.4 7.3E-05 28.8 3.8 55 379-433 21-77 (90)
370 KOG4077 Cytochrome c oxidase, 79.3 15 0.00033 27.2 6.9 59 294-354 67-125 (149)
371 COG5159 RPN6 26S proteasome re 79.2 41 0.0009 29.1 17.6 163 245-407 127-312 (421)
372 PF04190 DUF410: Protein of un 78.8 43 0.00093 29.0 16.5 83 241-340 88-170 (260)
373 smart00386 HAT HAT (Half-A-TPR 78.5 3.8 8.2E-05 21.4 3.2 30 394-423 1-30 (33)
374 TIGR02270 conserved hypothetic 78.4 59 0.0013 30.4 24.7 233 81-337 45-278 (410)
375 PF07163 Pex26: Pex26 protein; 78.2 14 0.0003 31.7 7.5 86 316-403 88-181 (309)
376 PF08311 Mad3_BUB1_I: Mad3/BUB 78.2 10 0.00022 28.5 6.2 42 398-439 81-124 (126)
377 PF08424 NRDE-2: NRDE-2, neces 78.1 51 0.0011 29.6 18.1 143 294-447 49-213 (321)
378 KOG0551 Hsp90 co-chaperone CNS 77.8 5.1 0.00011 35.1 5.0 86 354-439 88-178 (390)
379 PF04097 Nic96: Nup93/Nic96; 77.5 67 0.0015 32.0 13.3 223 139-376 110-356 (613)
380 PF10366 Vps39_1: Vacuolar sor 77.5 23 0.0005 25.7 7.7 27 278-304 41-67 (108)
381 KOG0376 Serine-threonine phosp 77.5 1.2 2.6E-05 40.9 1.3 95 318-415 11-107 (476)
382 KOG1586 Protein required for f 76.7 44 0.00096 28.1 19.1 21 287-307 165-185 (288)
383 PF04190 DUF410: Protein of un 76.5 50 0.0011 28.6 14.0 81 346-443 89-170 (260)
384 PF06552 TOM20_plant: Plant sp 75.8 33 0.00071 27.5 8.5 73 260-340 52-136 (186)
385 KOG2300 Uncharacterized conser 75.8 72 0.0016 30.1 32.4 347 87-438 60-509 (629)
386 PF10579 Rapsyn_N: Rapsyn N-te 75.4 11 0.00023 25.3 4.9 13 326-338 21-33 (80)
387 cd08819 CARD_MDA5_2 Caspase ac 75.3 23 0.0005 24.3 6.6 66 93-160 21-86 (88)
388 KOG2300 Uncharacterized conser 75.0 76 0.0016 29.9 27.3 380 29-412 47-517 (629)
389 PF14669 Asp_Glu_race_2: Putat 74.9 43 0.00094 27.1 12.8 53 248-300 137-205 (233)
390 PF09670 Cas_Cas02710: CRISPR- 73.9 75 0.0016 29.4 12.3 53 252-304 140-197 (379)
391 KOG2063 Vacuolar assembly/sort 73.8 1.2E+02 0.0025 31.5 20.1 26 33-58 506-531 (877)
392 KOG2066 Vacuolar assembly/sort 73.8 1E+02 0.0022 30.9 26.3 151 37-199 362-533 (846)
393 PF07575 Nucleopor_Nup85: Nup8 73.7 97 0.0021 30.6 18.1 28 29-57 147-174 (566)
394 PF14689 SPOB_a: Sensor_kinase 73.5 7.9 0.00017 24.7 4.0 21 282-302 29-49 (62)
395 PF14561 TPR_20: Tetratricopep 73.0 17 0.00036 25.3 5.8 52 345-396 20-74 (90)
396 PF11846 DUF3366: Domain of un 72.7 17 0.00037 29.7 6.9 30 344-373 141-170 (193)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 72.5 38 0.00082 25.4 9.0 44 225-268 81-124 (126)
398 cd08819 CARD_MDA5_2 Caspase ac 72.4 19 0.00041 24.7 5.6 61 130-191 23-86 (88)
399 PF11846 DUF3366: Domain of un 72.1 11 0.00023 30.9 5.5 53 6-58 119-171 (193)
400 COG3947 Response regulator con 72.0 67 0.0015 28.0 15.6 57 281-338 284-340 (361)
401 KOG3364 Membrane protein invol 71.7 31 0.00067 26.1 7.0 73 344-416 29-107 (149)
402 COG4455 ImpE Protein of avirul 71.4 59 0.0013 27.1 11.6 78 278-356 3-81 (273)
403 PF12862 Apc5: Anaphase-promot 71.3 14 0.00029 26.0 5.2 51 392-442 10-69 (94)
404 TIGR02508 type_III_yscG type I 71.0 35 0.00075 24.3 9.2 51 148-200 47-97 (115)
405 PF12862 Apc5: Anaphase-promot 70.5 13 0.00028 26.1 5.0 27 386-412 47-73 (94)
406 smart00638 LPD_N Lipoprotein N 69.6 1.2E+02 0.0026 30.0 22.2 42 125-167 325-367 (574)
407 KOG0991 Replication factor C, 69.6 68 0.0015 27.1 12.8 90 245-340 132-221 (333)
408 PF04910 Tcf25: Transcriptiona 69.2 93 0.002 28.5 17.6 156 275-441 39-220 (360)
409 PF11838 ERAP1_C: ERAP1-like C 69.0 86 0.0019 28.0 18.7 153 292-449 146-310 (324)
410 KOG3364 Membrane protein invol 68.9 21 0.00046 26.9 5.7 70 205-274 30-102 (149)
411 KOG4507 Uncharacterized conser 68.9 25 0.00054 33.7 7.4 88 184-274 620-707 (886)
412 PF10579 Rapsyn_N: Rapsyn N-te 68.9 18 0.00039 24.3 4.8 18 247-264 47-64 (80)
413 KOG0686 COP9 signalosome, subu 68.7 97 0.0021 28.5 13.5 23 210-232 153-175 (466)
414 KOG0545 Aryl-hydrocarbon recep 68.5 55 0.0012 27.8 8.5 92 283-376 185-293 (329)
415 KOG4077 Cytochrome c oxidase, 68.0 22 0.00048 26.4 5.5 58 329-387 67-125 (149)
416 COG4976 Predicted methyltransf 67.8 7.7 0.00017 32.2 3.6 60 357-416 5-65 (287)
417 KOG2908 26S proteasome regulat 67.7 75 0.0016 28.4 9.6 66 247-312 79-156 (380)
418 PF04097 Nic96: Nup93/Nic96; 67.2 1.4E+02 0.0031 29.8 22.1 44 109-153 112-158 (613)
419 KOG0687 26S proteasome regulat 66.9 94 0.002 27.7 10.7 22 316-337 109-130 (393)
420 PF10366 Vps39_1: Vacuolar sor 66.9 46 0.001 24.1 8.1 27 382-408 41-67 (108)
421 PF13762 MNE1: Mitochondrial s 66.3 58 0.0013 25.1 10.9 80 245-324 41-128 (145)
422 TIGR02270 conserved hypothetic 65.7 1.2E+02 0.0026 28.4 24.7 231 147-405 45-277 (410)
423 PRK13342 recombination factor 65.2 1.2E+02 0.0027 28.4 13.2 43 173-216 229-274 (413)
424 PF08424 NRDE-2: NRDE-2, neces 64.0 1.1E+02 0.0024 27.5 17.0 121 224-346 48-189 (321)
425 PF07575 Nucleopor_Nup85: Nup8 63.5 1.4E+02 0.003 29.5 12.1 69 160-231 394-462 (566)
426 KOG4642 Chaperone-dependent E3 63.4 93 0.002 26.4 10.9 85 181-270 20-105 (284)
427 PF12968 DUF3856: Domain of Un 63.3 23 0.00049 26.1 4.8 20 420-439 106-125 (144)
428 KOG0687 26S proteasome regulat 63.1 1.1E+02 0.0024 27.2 13.7 116 223-340 84-210 (393)
429 PF14689 SPOB_a: Sensor_kinase 63.1 37 0.00079 21.6 5.6 34 25-58 17-50 (62)
430 PF15469 Sec5: Exocyst complex 62.8 37 0.0008 27.4 6.8 25 316-340 91-115 (182)
431 PF09477 Type_III_YscG: Bacter 62.5 56 0.0012 23.6 9.9 86 222-314 21-106 (116)
432 smart00777 Mad3_BUB1_I Mad3/BU 62.2 40 0.00087 25.2 6.2 42 397-438 80-123 (125)
433 PF11817 Foie-gras_1: Foie gra 61.8 64 0.0014 27.7 8.4 29 30-59 10-38 (247)
434 PF10255 Paf67: RNA polymerase 61.8 36 0.00078 31.5 7.1 55 353-407 128-191 (404)
435 KOG4814 Uncharacterized conser 61.8 49 0.0011 32.3 8.0 86 357-442 364-456 (872)
436 PF09986 DUF2225: Uncharacteri 61.5 26 0.00057 29.2 5.8 27 418-444 169-195 (214)
437 PF14853 Fis1_TPR_C: Fis1 C-te 60.8 23 0.00051 21.7 4.0 27 249-275 7-33 (53)
438 PRK10941 hypothetical protein; 60.2 1.2E+02 0.0025 26.5 10.7 76 280-356 185-260 (269)
439 PF15469 Sec5: Exocyst complex 60.1 90 0.002 25.2 8.9 21 283-303 93-113 (182)
440 TIGR02508 type_III_yscG type I 59.8 61 0.0013 23.1 9.2 85 223-314 21-105 (115)
441 KOG0530 Protein farnesyltransf 59.4 1.2E+02 0.0025 26.2 11.8 135 285-423 52-190 (318)
442 PRK10564 maltose regulon perip 59.0 23 0.0005 30.9 5.1 43 274-316 254-297 (303)
443 PF13934 ELYS: Nuclear pore co 59.0 1.1E+02 0.0024 25.8 14.7 21 115-135 114-134 (226)
444 COG0790 FOG: TPR repeat, SEL1 58.8 1.3E+02 0.0028 26.5 18.2 187 219-412 53-269 (292)
445 KOG2396 HAT (Half-A-TPR) repea 58.7 1.7E+02 0.0037 27.9 33.4 409 10-441 83-557 (568)
446 PF12926 MOZART2: Mitotic-spin 58.3 58 0.0013 22.4 6.6 62 73-136 9-70 (88)
447 PF07064 RIC1: RIC1; InterPro 58.2 1.2E+02 0.0027 26.1 13.5 88 143-235 156-248 (258)
448 cd08326 CARD_CASP9 Caspase act 57.6 29 0.00063 23.8 4.5 33 123-155 44-76 (84)
449 KOG2471 TPR repeat-containing 56.6 1.8E+02 0.004 27.6 12.6 276 76-358 17-380 (696)
450 KOG2659 LisH motif-containing 55.4 1.3E+02 0.0027 25.3 8.5 98 307-407 22-130 (228)
451 smart00777 Mad3_BUB1_I Mad3/BU 55.2 87 0.0019 23.5 8.9 42 226-267 82-123 (125)
452 PRK10564 maltose regulon perip 54.4 23 0.00051 30.9 4.4 34 30-66 256-289 (303)
453 KOG1463 26S proteasome regulat 54.0 1.7E+02 0.0036 26.4 17.8 165 245-409 130-316 (411)
454 PF09477 Type_III_YscG: Bacter 53.7 83 0.0018 22.8 8.8 78 45-137 20-97 (116)
455 KOG2297 Predicted translation 52.0 1.7E+02 0.0037 25.9 14.9 220 169-400 109-341 (412)
456 KOG4814 Uncharacterized conser 51.9 2.5E+02 0.0055 27.8 10.9 88 181-272 364-457 (872)
457 PF11848 DUF3368: Domain of un 51.8 50 0.0011 19.7 5.1 32 288-319 14-45 (48)
458 COG0735 Fur Fe2+/Zn2+ uptake r 51.5 1.1E+02 0.0023 23.7 7.3 57 62-124 14-70 (145)
459 KOG1498 26S proteasome regulat 51.2 2E+02 0.0043 26.4 14.1 92 351-447 135-245 (439)
460 PF10255 Paf67: RNA polymerase 50.9 2.1E+02 0.0046 26.7 16.3 92 108-199 74-192 (404)
461 KOG4279 Serine/threonine prote 50.9 2.8E+02 0.0061 28.1 14.2 173 225-412 181-398 (1226)
462 PF12069 DUF3549: Protein of u 50.2 2E+02 0.0042 26.0 13.5 17 274-290 228-244 (340)
463 KOG3824 Huntingtin interacting 50.2 19 0.00041 31.4 3.2 56 359-414 128-184 (472)
464 cd00280 TRFH Telomeric Repeat 50.1 1.4E+02 0.003 24.2 10.1 123 314-437 16-167 (200)
465 COG5187 RPN7 26S proteasome re 49.8 1.5E+02 0.0031 26.0 8.2 141 298-440 60-218 (412)
466 COG5191 Uncharacterized conser 49.5 24 0.00052 30.9 3.7 80 342-421 102-183 (435)
467 PF08986 DUF1889: Domain of un 49.5 36 0.00077 23.5 3.8 56 47-107 25-80 (119)
468 PF10475 DUF2450: Protein of u 48.2 1.4E+02 0.003 26.4 8.5 24 169-192 195-218 (291)
469 COG4976 Predicted methyltransf 48.1 45 0.00098 27.9 4.9 57 320-378 4-60 (287)
470 PF11663 Toxin_YhaV: Toxin wit 48.1 24 0.00052 26.6 3.1 33 287-321 106-138 (140)
471 KOG4567 GTPase-activating prot 47.7 2E+02 0.0044 25.5 9.4 78 94-172 263-350 (370)
472 PF09986 DUF2225: Uncharacteri 47.3 1.6E+02 0.0035 24.6 8.2 29 384-412 169-197 (214)
473 PF09670 Cas_Cas02710: CRISPR- 46.1 2.5E+02 0.0054 26.0 11.9 56 179-236 139-198 (379)
474 KOG1308 Hsp70-interacting prot 45.8 33 0.00071 30.6 4.0 15 257-271 196-210 (377)
475 KOG2908 26S proteasome regulat 45.6 2.2E+02 0.0049 25.6 8.8 20 216-235 124-143 (380)
476 PF10475 DUF2450: Protein of u 45.0 2.2E+02 0.0048 25.2 11.7 25 280-304 131-155 (291)
477 PF12968 DUF3856: Domain of Un 44.6 1.3E+02 0.0028 22.4 7.4 63 347-409 55-129 (144)
478 KOG3636 Uncharacterized conser 43.7 2.4E+02 0.0052 26.3 9.0 84 304-389 176-269 (669)
479 cd08332 CARD_CASP2 Caspase act 43.5 62 0.0013 22.5 4.5 29 124-152 49-77 (90)
480 KOG4567 GTPase-activating prot 43.4 2.4E+02 0.0051 25.1 10.3 73 296-374 263-345 (370)
481 PF11663 Toxin_YhaV: Toxin wit 43.2 40 0.00088 25.4 3.6 31 86-118 107-137 (140)
482 KOG0376 Serine-threonine phosp 43.1 81 0.0018 29.6 6.2 97 182-283 15-112 (476)
483 PF09454 Vps23_core: Vps23 cor 42.5 58 0.0013 21.0 3.8 51 28-87 5-55 (65)
484 COG4941 Predicted RNA polymera 41.7 2.7E+02 0.0058 25.2 10.7 118 291-413 271-398 (415)
485 KOG4521 Nuclear pore complex, 41.3 4.9E+02 0.011 28.1 15.0 23 249-271 926-948 (1480)
486 KOG1114 Tripeptidyl peptidase 41.1 4.5E+02 0.0098 27.6 14.3 52 205-256 1229-1280(1304)
487 COG2912 Uncharacterized conser 41.0 85 0.0018 27.1 5.7 57 386-442 187-243 (269)
488 PF04034 DUF367: Domain of unk 40.9 1.5E+02 0.0033 22.2 7.3 56 349-405 68-124 (127)
489 PF04762 IKI3: IKI3 family; I 40.6 4.8E+02 0.01 27.8 15.8 22 176-197 699-720 (928)
490 KOG2659 LisH motif-containing 40.5 2.2E+02 0.0048 23.9 9.0 17 321-337 74-90 (228)
491 KOG3807 Predicted membrane pro 40.4 2.7E+02 0.0059 24.9 12.2 51 322-372 286-336 (556)
492 PF04910 Tcf25: Transcriptiona 40.2 3E+02 0.0065 25.3 17.6 31 204-234 37-67 (360)
493 PF11838 ERAP1_C: ERAP1-like C 40.2 2.7E+02 0.0059 24.8 17.3 30 275-304 200-229 (324)
494 KOG2422 Uncharacterized conser 39.8 3.7E+02 0.0081 26.3 13.6 165 286-450 248-451 (665)
495 COG5108 RPO41 Mitochondrial DN 39.7 2.3E+02 0.0051 28.1 8.7 76 212-288 33-115 (1117)
496 cd07153 Fur_like Ferric uptake 39.5 86 0.0019 22.8 5.1 42 284-325 8-49 (116)
497 PRK09857 putative transposase; 39.4 1.1E+02 0.0024 27.1 6.4 62 385-446 211-272 (292)
498 PF02184 HAT: HAT (Half-A-TPR) 38.8 42 0.00091 18.0 2.3 13 292-304 3-15 (32)
499 PRK14958 DNA polymerase III su 38.5 3.5E+02 0.0077 26.3 10.1 45 293-339 181-226 (509)
500 PF07064 RIC1: RIC1; InterPro 38.1 2.7E+02 0.0058 24.1 16.0 62 352-413 184-253 (258)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-66 Score=511.24 Aligned_cols=428 Identities=25% Similarity=0.425 Sum_probs=372.0
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 9 TPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
++.+.+.+++..+.+.+. .||+.+||.+++.|++.|++++|.++|++|. . | |..+|+.++.+|++.|
T Consensus 137 ~~~~~a~~l~~~m~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~--~---~~~t~n~li~~~~~~g 203 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGF-EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------E--R---NLASWGTIIGGLVDAG 203 (697)
T ss_pred CCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------C--C---CeeeHHHHHHHHHHCc
Confidence 344455555555555554 5566666666666666666666666666653 1 4 5556666666666666
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC----CCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP----ERNLVTWNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+. .+|..+|+.++.+|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666666555544 3677889999999999999999999999
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 165 EMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
+|.++|..+||.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.+++..+.+.|..+ +..
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~ 361 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIV 361 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-Cee
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999766 999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
+++.|+++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
|+.++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.++++++... |+..+|+.|+.+|...|+++.|..+++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999887799999999999999999999999999999998765 999999999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcCC
Q 012879 405 KILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454 (454)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 454 (454)
++.+.+|.+...|..++.+|.+.|++++|.+++++|.++|+.+.||+||+
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 99999999999999999999999999999999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-64 Score=502.16 Aligned_cols=428 Identities=30% Similarity=0.535 Sum_probs=408.2
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+.+++..+.+.+. .||+.+||.|+++|++.|++++|.++|+.|. . | |..+|+.++.+|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~--~---d~~s~n~li~~~~~ 366 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-------T--K---DAVSWTAMISGYEK 366 (857)
T ss_pred hcCChHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--C---CeeeHHHHHHHHHh
Confidence 34567778888888888876 8999999999999999999999999999985 2 5 88899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSL 162 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~ 162 (454)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+ ++..+|+.++.+|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874 7889999999999999999999999
Q ss_pred HhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch
Q 012879 163 FEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD 242 (454)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (454)
|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|..+ +
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~ 523 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-D 523 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-c
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999776 9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 322 (454)
..++++|+.+|+++|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 999999999999999999999999998 49999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
+.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|.-. ||..+|+.|+.+|...|+.+.++..
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999966699999999999999999999999999999999754 9999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcCC
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 454 (454)
.+++.+..|.+...|..+...|...|+|++|.++.+.|+++|+++.||+|||
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 9999999999999999999999999999999999999999999999999996
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-61 Score=473.99 Aligned_cols=428 Identities=15% Similarity=0.202 Sum_probs=401.0
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++...+.++++.|.+.+...++..+++.++..|.+.|.+++|+.+|+.|. . | |..+|+.++.+|++.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~--p---d~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------N--P---TLSTFNMLMSVCASS 450 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------C--C---CHHHHHHHHHHHHhC
Confidence 467789999999999999878999999999999999999999999999996 2 6 999999999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC----CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP----ERNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 489999999999999999999999999
Q ss_pred hhCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 164 EEMPC----RNVVSWTGIIDGYTRMNRSNEALALFRKMVAC-EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 164 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
++|.+ ||..+|+.++.+|++.|++++|.++|++|... .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99963 89999999999999999999999999999862 27899999999999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
.| +..+|+.++.+|++.|++++|.++|++|... .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.
T Consensus 611 ~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 76 9999999999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g 394 (454)
+|.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|++|... .||..+|+.++.+|.+.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999987 99999999999999999999999999999999876 899999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcC-CCCcHHHHHHHHH----hcC-------------------CcCcHHHHHHHHhhcccccCC
Q 012879 395 NVEMGERVTRKILEMERG-YGGDYVLMYNILA----GVG-------------------RFGDAERLRRVMDERNAFKVP 449 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~~~~~~~~~~~ 449 (454)
++++|.+++++|.+.+.. +..+|..++.++. +++ ..++|..+|++|.+.|+.|+.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 999999999999998877 5567777776533 222 235699999999999998764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-60 Score=469.35 Aligned_cols=430 Identities=15% Similarity=0.195 Sum_probs=374.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+..+++.|.+.+. .||..+|+.+|.+|++.|++++|.++|++|. ..|+. | |..+|+.+|.+|++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~---~~Gv~--P---dvvTynaLI~gy~k 519 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMV---NAGVE--A---NVHTFGALIDGCAR 519 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHHH
Confidence 45677888999999988887 8999999999999999999999999999998 88888 8 99999999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC------CCCchhHHHHHHHHHhcCCHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP------ERNLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999884 478889999999999999999999
Q ss_pred HHHhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 161 SLFEEMPC----RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 161 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.++.+|++.|++++|.++++.|.+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99998875 66789999999999999999999999999988 88999999999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 237 GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
|..| +..+|+.|+.+|++.|++++|.++|++|... .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8766 8899999999999999999999999998764 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----c-------------------CChHHHHHHHh
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----A-------------------GRLEQAEKTAL 371 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 371 (454)
+.++.+|++.|++++|.+++++|.+. |+.||..+|+.++..|.+ + +..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 99999999999999999999999888 999999999998865432 2 12367888899
Q ss_pred cCCCC--CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc-CCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 372 GIPSE--ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 372 ~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
+|... .||..||+.++.++...++.+.+..+++++...+. .+..+|..++.++.+. .++|..++++|.+.|+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 88887 88999999999888788888888888887754433 3567888999887322 3589999999999999876
Q ss_pred CC
Q 012879 449 PG 450 (454)
Q Consensus 449 ~~ 450 (454)
..
T Consensus 915 ~~ 916 (1060)
T PLN03218 915 VS 916 (1060)
T ss_pred cc
Confidence 53
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.7e-60 Score=472.71 Aligned_cols=420 Identities=23% Similarity=0.336 Sum_probs=394.9
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++...+++++.++.+.+. .||+.+||+|+.+|++.|++++|.++|++|. . | |..+|+.+|.+|++.
T Consensus 200 ~~~~~~~~~~~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~--~---d~~s~n~li~~~~~~ 266 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGF-ELDVDVVNALITMYVKCGDVVSARLVFDRMP-------R--R---DCISWNAMISGYFEN 266 (857)
T ss_pred ccchhhHHHHHHHHHHcCC-CcccchHhHHHHHHhcCCCHHHHHHHHhcCC-------C--C---CcchhHHHHHHHHhC
Confidence 3455667777777777775 7889999999999999999999999999996 2 5 888999999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+ ||..+|+.++.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 89999999999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH
Q 012879 164 EEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243 (454)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (454)
++|.+||..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.+.++++.+.+.|..+ +.
T Consensus 347 ~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~ 424 (857)
T PLN03077 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YV 424 (857)
T ss_pred hhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-ch
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999877 99
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
.+++.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. +++||..||+.++.+|++
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999988 8999999999999999999999999999986 599999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+.+|.+|++.|+.++|+++|
T Consensus 502 ~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 502 IGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred hchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999998 379999999999999999999999999
Q ss_pred HHHHHhhcC-CCCcHHHHHHHHHhcCCcCcHHHHHHHHh-hcccccCC
Q 012879 404 RKILEMERG-YGGDYVLMYNILAGVGRFGDAERLRRVMD-ERNAFKVP 449 (454)
Q Consensus 404 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 449 (454)
++|.+.+.. +..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 999988766 77889999999999999999999999998 56777653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-55 Score=431.26 Aligned_cols=393 Identities=20% Similarity=0.287 Sum_probs=261.9
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCC-CCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHS-HSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
++..+|+.+|..|.+.|++++|+++|+.|. ..+ .. | |..+|+.++.+|++.++++.+.+++..|.+.|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~---~~~~~~--~---~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILE---AGCPFT--L---PASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHH---hcCCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 456699999999999999999999999997 543 56 7 99999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHh
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC----RNVVSWTGIIDGYTR 183 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 183 (454)
|..+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.++.+|..
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999853 555666555555555
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|..+.+.+++..+.+. |..||..+|+.++.+|++.|++++|.++|+.|.+ ++..+|+.++.+|++.|++++|.
T Consensus 237 ~~~~~~~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 237 LGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred CCcHHHHHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555554 5555555555555555555555555555555432 14455555555555555555555
Q ss_pred HHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 264 KLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
++|++|... .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 555555443 3455555555555555555555555555555555555555555555555555555555555555431
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh-hcC-CCCcH
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERG-YGGDY 417 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~ 417 (454)
||..+|++||.+|++.|+.++|.++|++|... .||..||+.++.+|.+.|+.++|.++|+.|.+. +.. +..+|
T Consensus 389 ---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred ---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 34555555555555555555555555555443 455555555555555555555555555555432 111 23345
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHH
Q 012879 418 VLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
..++.+|.+.|++++|.+++++|
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC
Confidence 55555555555555555554443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.6e-31 Score=268.62 Aligned_cols=416 Identities=13% Similarity=0.057 Sum_probs=236.8
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+..+++.+.+..+ +++.+|..+...+...|++++|.+.|+++. ...+. +...+..+...+..
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~la~~~~~ 511 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKAL---SIEPD------FFPAAANLARIDIQ 511 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHH---hhCCC------cHHHHHHHHHHHHH
Confidence 34566667777777766554 566677777777777777777777777776 44433 55566666677777
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.+ .+...+..+...+.+.|++++|.+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777776654 44556666666666677777777777666643 23345555666666666666666666
Q ss_pred hhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 164 EEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 164 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
+.+.+ .+...|..+..++...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+. .|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 666 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--KP 666 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 66543 33455666666666666666666666666552 2334455556666666666666666666666554 34
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.+...+..++..+...|++++|.++++.+....| +...+..+...+...|++++|.+.|+++.+.+ |+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 3455555555566666666666666655555433 34445555555555555555555555555442 22344444555
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhH
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++... +++..++..+...+...|+ .+
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 555555555555555555442 2334444555555555555555555555555444 2234444444444444444 44
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
|+..++++.+..|.++..+..++.++.+.|++++|.+.++++.+.
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444444444444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-30 Score=264.16 Aligned_cols=416 Identities=12% Similarity=0.067 Sum_probs=346.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+..+++...+..+ .+...+..+...+...|++++|.+.|+.+. ...+. +..++..+...+..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVL---TIDPK------NLRAILALAGLYLR 545 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcC------cHHHHHHHHHHHHH
Confidence 45667778888888887776 667778888888999999999999999987 55544 77788888888888
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++.+.+ .+..+|..+...+.+.|++++|...|
T Consensus 546 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999888765 55677788888899999999999999988864 45668888889999999999999999
Q ss_pred hhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 164 EEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 164 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
+.+.+ .+...+..+..++...|++++|...|+++.+ ..+.+..++..+...+...|+++.|..+++.+.+.. |
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~ 700 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--P 700 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c
Confidence 88754 3556788888888999999999999998887 345567888888889999999999999999888873 5
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
.+...+..+...+...|++++|.+.|+++....|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 577788888889999999999999999988877777778888888999999999999999888764 4467788888888
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A 399 (454)
|...|++++|..+|+.+.+. .+++..++..+...+...|+ .+|+..++++.... .+..++..+...+...|++++|
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999998874 34567788888888999988 78999988877763 3556777888888889999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.+.++++++.+|.++.++..++.++.+.|++++|.+++++|.+
T Consensus 857 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 857 LPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999888888888999999999999999999988863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.3e-24 Score=189.32 Aligned_cols=385 Identities=12% Similarity=0.116 Sum_probs=333.6
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (454)
-..+|..+...+-..|++++|+.+++.+. +..+. ....|..+..++...|+.+.|.+.|.+.++.+ |+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~ai---el~p~------fida~inla~al~~~~~~~~a~~~~~~alqln--P~l 183 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAI---ELKPK------FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDL 183 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHH---hcCch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cch
Confidence 34688899999999999999999999999 77766 78899999999999999999999999988754 554
Q ss_pred h-hHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHH
Q 012879 110 Y-VNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLFEEMPCRN---VVSWTGIIDGYT 182 (454)
Q Consensus 110 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~ 182 (454)
. ....+...+-..|++++|...+.+..+ |. ...|..+.-.+-..|++..|+..|++...-| ...|-.|...|-
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH
Confidence 4 344455566678999999999888775 43 3579999999999999999999999987633 368889999999
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 262 (454)
..+.+++|+..|.+.... .+-....+..+...|...|+++.|+..+++..+. .|.-+..|+.|..++-..|++.+|
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHH
Confidence 999999999999998863 3344678889999999999999999999999997 676789999999999999999999
Q ss_pred HHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 263 SKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+.|.+.....| ...+.+.|...|...|.++.|..+|....+. .|. ...++.|...|-++|++++|+..|++..
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-- 415 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-- 415 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--
Confidence 999999988866 4568899999999999999999999998875 343 4578889999999999999999999998
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 341 CEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 341 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
.++|+ ...|+.+...|-..|+.+.|.+.+.+.....|. ...++.|...|...|++.+|+..++.+++..|+.+.+|.
T Consensus 416 -rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 416 -RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred -hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 56777 678999999999999999999999999887554 578899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcCcHH
Q 012879 419 LMYNILAGVGRFGDAE 434 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~ 434 (454)
.++.++.-..+|.+-.
T Consensus 495 Nllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 495 NLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHhcccchH
Confidence 8888887777776633
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=7.1e-23 Score=211.54 Aligned_cols=414 Identities=10% Similarity=0.024 Sum_probs=332.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhH---------
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTY--------- 77 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~--------- 77 (454)
..++.+.+...++...+..+ .+..++..+...+.+.|++++|+..|++.. ...+. . .....+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al---~~~p~--~--~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKAL---ALDPH--S--SNRDKWESLLKVNRY 351 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC--c--cchhHHHHHHHhhhH
Confidence 35677888899999988876 788899999999999999999999999998 44433 1 021112
Q ss_pred ---HHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHH
Q 012879 78 ---SFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLV 151 (454)
Q Consensus 78 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~ 151 (454)
......+...|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.+ | +...+..+...+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 122445778999999999999999875 45677888899999999999999999999885 3 3446666666664
Q ss_pred hcCCHHHHHHHHhhCCCCC------------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc
Q 012879 152 KWGELEFARSLFEEMPCRN------------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ 219 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (454)
.++.++|..+++.+.... ...+..+...+...|++++|+..|++..+. .+-+...+..+...+.+
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 568899999998876321 224556677888999999999999999984 34567788889999999
Q ss_pred cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC--Ch---------hhHHHHHHHHHh
Q 012879 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK--NL---------VSWTSIISGFAM 288 (454)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---------~~~~~l~~~~~~ 288 (454)
.|++++|...++++.+. .|.++..+..+...+...|+.++|...++.+..... +. ..+..+...+..
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875 455777777777778889999999999998865422 11 112345667889
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|+.++|..+++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999872 2445667778889999999999999999999974 34457888999999999999999999
Q ss_pred HHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC------cHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 369 TALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG------DYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 369 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
.++.+....| +...+..+..++...|++++|.++++++++..+.+++ .+..++.++...|++++|.+.+++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998887744 4566777888999999999999999999988776543 45567899999999999999999886
Q ss_pred h
Q 012879 442 E 442 (454)
Q Consensus 442 ~ 442 (454)
.
T Consensus 739 ~ 739 (1157)
T PRK11447 739 V 739 (1157)
T ss_pred h
Confidence 4
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.7e-22 Score=208.65 Aligned_cols=422 Identities=10% Similarity=0.017 Sum_probs=273.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhc---------------CCCCCCCCC
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYT---------------HSHSPLPPL 71 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~p~~ 71 (454)
..++.+.+...++.+.+..| .++..+..+...+...|++++|+..|+++.+... .+.. +.
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~--~~- 233 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVS--DA- 233 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCC--hh-
Confidence 34666778888888888876 6777888999999999999999999998752100 0000 00
Q ss_pred CChhhHH----------------------------------HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHH
Q 012879 72 FDSFTYS----------------------------------FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVN 117 (454)
Q Consensus 72 ~~~~~~~----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 117 (454)
....+. .....+...|++++|...|++.++.. +.+...+..+..
T Consensus 234 -~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~ 311 (1157)
T PRK11447 234 -SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQ 311 (1157)
T ss_pred -hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 000010 11334566788899999999888865 446778888888
Q ss_pred HHHhCCChhHHHHHHhhCCC--CCc---hhHHH------------HHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPE--RNL---VTWNV------------MITGLVKWGELEFARSLFEEMPC---RNVVSWTGI 177 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~------------ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 177 (454)
++.+.|++++|+..|++..+ |+. ..|.. ....+.+.|++++|+..|++..+ .+...+..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 89999999999999888764 322 11221 23456788899999999988765 344567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC-------chHHHHHHHH
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA-------FDIRVLNCLI 250 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~l~ 250 (454)
...+...|++++|++.|++..+. .+.+...+..+...+. .++.++|..+++.+....... .....+..+.
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 88888999999999999988874 2333444444444332 223344444433322110000 0011222333
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH---------------
Q 012879 251 DTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF--------------- 314 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------------- 314 (454)
..+...|++++|++.|++..+..| +...+..+...|.+.|++++|...++++.+.... +...+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 444445555555555555544444 2334444444555555555555555554432111 11111
Q ss_pred -----------------------------HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 315 -----------------------------LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 315 -----------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
......+...|+.++|.++++ . .+++...+..+...+.+.|++++
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~---~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q---QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h---CCCCchHHHHHHHHHHHcCCHHH
Confidence 123344555666666666655 1 23445566778888999999999
Q ss_pred HHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 366 AEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 366 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
|++.|+++....| +...+..++..+...|++++|++.++++.+..|.+...+..++.++.+.|++++|.++++++....
T Consensus 622 A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999998887744 577888889999999999999999999988888888888888999999999999999999988764
Q ss_pred c
Q 012879 445 A 445 (454)
Q Consensus 445 ~ 445 (454)
.
T Consensus 702 ~ 702 (1157)
T PRK11447 702 K 702 (1157)
T ss_pred c
Confidence 3
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=5.1e-22 Score=192.94 Aligned_cols=397 Identities=11% Similarity=-0.016 Sum_probs=300.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (454)
..+......+.+.|++++|+..|++.. .. . | +...|..+..++...|++++|++.++..++.. +.+...
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al---~~--~--p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 196 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAI---EC--K--P---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKA 196 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---hc--C--C---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 346677888999999999999999987 43 3 5 66789999999999999999999999999875 446678
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPC-------------------- 168 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------------------- 168 (454)
+..+..+|...|++++|+..|..+... +......++..+........+...++.-..
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 889999999999999999877655321 111111111111111111222222211110
Q ss_pred ---------CCc---chHHHHHHHH---HhcCChHHHHHHHHHHHHccCCCC-ChhhHHhHHHHHHccCchhHHHHHHHh
Q 012879 169 ---------RNV---VSWTGIIDGY---TRMNRSNEALALFRKMVACEYTEP-SEITILAVLPAIWQNGDVKSCQLIHGY 232 (454)
Q Consensus 169 ---------~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (454)
.+. ..+..+...+ ...+++++|...|++..+.+...| ....+..+...+...|++++|...+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000 1111111111 223689999999999987632233 356678888888999999999999999
Q ss_pred hhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 012879 233 GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311 (454)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 311 (454)
..+. .|.....|..+..++...|++++|...|+++....| +...|..+...+...|++++|+..|++..+.. +.+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9986 565788899999999999999999999999988766 67889999999999999999999999998864 2356
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-h-------HH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-V-------VW 383 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~-------~~ 383 (454)
..+..+..++.+.|++++|...|+...+. .+.+...+..+..++...|++++|++.|++.....|+. . .+
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 67777888899999999999999999874 34457788899999999999999999999977763321 1 12
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+..+..+...|++++|+++++++++.+|.+...+..++.++.+.|++++|.+.+++..+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2222334457999999999999999999888889999999999999999999999886643
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7.6e-24 Score=187.77 Aligned_cols=401 Identities=12% Similarity=0.054 Sum_probs=334.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCC----------------------------CCCChhhHHHHHHHHh
Q 012879 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLP----------------------------PLFDSFTYSFLIRTCA 85 (454)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p----------------------------~~~~~~~~~~l~~~~~ 85 (454)
-..|..-..+.|++.+|.+.-+.+-+ .++.+.+ +..-.++|..+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~---~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQ---EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhc---cCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 44566667788888888887665542 1111000 0013468888899999
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHH-HHHHHHhcCCHHHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNV-MITGLVKWGELEFARSL 162 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-ll~~~~~~~~~~~A~~~ 162 (454)
..|+++.|+.+++.+++.. +-.+..|..+..++...|+.+.|.+.|.+..+ |+.....+ +-..+-..|++++|...
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999999875 44678899999999999999999999988876 54444333 33445567889998888
Q ss_pred HhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC-hhhHHhHHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 163 FEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS-EITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 163 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
+.+..+ |. ...|+.|...+-.+|+...|++.|++..+. .|+ ...|..|...|...+.++.|...+.+....
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 877654 43 368999999999999999999999999863 455 578999999999999999999999998886
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
.|....++..+...|...|.++-|++.|++..+..|+ ...|+.|..++-..|++.+|.+.+.+..... +.-....+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 6768889999999999999999999999999998885 5689999999999999999999999988863 2245678899
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
...+...|.+++|..+|....+. .|. ....+.|...|-..|++++|+..+++.....|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998863 454 567889999999999999999999999988665 5789999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.+.|++.+.+++..+|.-.+++..|+.+|...|+..+|+.-+++..+.....
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999988866543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.1e-22 Score=186.14 Aligned_cols=298 Identities=13% Similarity=0.066 Sum_probs=213.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC---chhH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH---VYVN 112 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 112 (454)
.....+...|++++|+..|+++. ..++. +..++..+...+...|++++|..+++.+.+.+..++ ...+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEML---KVDPE------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHH---hcCcc------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 33445567788888888888887 55544 667788888888888888888888888876532221 2456
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--c------chHHHHHHHH
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPCRN--V------VSWTGIIDGY 181 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~------~~~~~l~~~~ 181 (454)
..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ . ..+..+...+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 7778888888888888888888765 345677778888888888888888887775421 1 1344566677
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
...|++++|...|+++.+. .+.+...+..+...+.+.|++++|.++++++.+.+. .....++..++.+|...|++++
T Consensus 191 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 191 LARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHH
Confidence 7788888888888887763 233455667777778888888888888888776521 1124566777788888888888
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHH
Q 012879 262 ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMV 338 (454)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 338 (454)
|.+.++++.+..|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.
T Consensus 268 A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 268 GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 88888887777676666677777788888888888888877765 5677777777766553 457778888888777
Q ss_pred HhcCCCCChh
Q 012879 339 EECEVLPDIK 348 (454)
Q Consensus 339 ~~~~~~~~~~ 348 (454)
+. ++.|++.
T Consensus 346 ~~-~~~~~p~ 354 (389)
T PRK11788 346 GE-QLKRKPR 354 (389)
T ss_pred HH-HHhCCCC
Confidence 76 6666554
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6.6e-22 Score=182.82 Aligned_cols=289 Identities=15% Similarity=0.106 Sum_probs=194.5
Q ss_pred HHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------cchHHHHHHHHHhcCChH
Q 012879 119 YVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC-RN------VVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~ 188 (454)
+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+.. ++ ...+..++..|...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444555555555555543 2 222444455555555555555555555443 11 134556666677777777
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch---HHHHHHHHHHHHhcCChhHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD---IRVLNCLIDTYAKCGCIFSASKL 265 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 265 (454)
+|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ...+..+...+.+.|++++|.+.
T Consensus 125 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777652 3345566667777777777777777777776665322211 22455677777888888888888
Q ss_pred HHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 012879 266 FEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVL 344 (454)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (454)
|+++.+..| +...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---Y 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 888877655 355677777888888888888888888877543333456777888888888888888888888764 4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc---CCChhHHHHHHHHHHHhhcC
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF---HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 412 (454)
|+...+..++..+.+.|++++|..+++++....|+..+++.++..+.. .|+.++++.+++++++....
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 565666778888888888888888888877777888888877776654 45788888888888876544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=8.9e-21 Score=183.72 Aligned_cols=331 Identities=11% Similarity=-0.021 Sum_probs=255.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
..-...++..+.++|++++|+.+++... ...+. +...+..++.+....|+++.|...++.+.+.. |.+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l---~~~p~------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~ 111 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRV---LTAKN------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPE 111 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHH---HhCCC------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChH
Confidence 3344556777888899999999999887 65555 55667777777788999999999999998875 55677
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHHHHHhc
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC--RNV-VSWTGIIDGYTRM 184 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~ 184 (454)
.+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...++.+.. |+. ..+.. +..+...
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~ 190 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNK 190 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHc
Confidence 888888889999999999999988875 4 455778888889999999999998887643 333 33333 3347888
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH---
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS--- 261 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 261 (454)
|++++|...++++.+. ...++...+..+...+...|++++|...++.+.+. .|.+...+..+..++...|++++
T Consensus 191 g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 191 SRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred CCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHH
Confidence 9999999999988774 32344445556667888899999999999998876 46678888889999999999885
Q ss_pred -HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 262 -ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 262 -a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
|...|++.....| +...+..+...+...|++++|+..+++..+... .+...+..+..++.+.|++++|...++.+..
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888998888766 566788888899999999999999999887642 2455666777888889999999999998886
Q ss_pred hcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc
Q 012879 340 ECEVLPDI-KHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 340 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
. .|+. ..+..+..++...|+.++|...|++.....|+
T Consensus 347 ~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 347 E---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred h---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 4 3443 33444567788899999999999987766443
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.7e-20 Score=181.74 Aligned_cols=386 Identities=11% Similarity=0.006 Sum_probs=294.6
Q ss_pred HHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHH
Q 012879 41 YSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYV 120 (454)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (454)
+.++.+|+.---.|+... +..-.... +......++..+.+.|++++|..+++...... +-+...+..++.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l 87 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHP---EKVRDSAG---NEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPL 87 (656)
T ss_pred hhhhhchhhHhHHhhccc---Hhhhhhcc---cccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHh
Confidence 456777776666665553 21111011 44556677888899999999999999998875 445556666777788
Q ss_pred hCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHH
Q 012879 121 SLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 121 ~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (454)
..|++++|...|+++.+ | +...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...+
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 89999999999999975 4 456788888999999999999999998875 3 4567888999999999999999999
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
+++... .+.+...+..+ ..+...|++++|...++.+.+... +.+......+..++...|++++|+..|+++....|
T Consensus 168 ~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 168 RTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 988764 22333333333 457889999999999999877632 22444556667889999999999999999998866
Q ss_pred -ChhhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 275 -NLVSWTSIISGFAMHGMGKE----AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 275 -~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. -+.+...
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a 320 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYV 320 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 66778889999999999986 899999998863 335678888999999999999999999999875 2334667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhH-HHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC-CcHH----HHHHH
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV-WRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYV----LMYNI 423 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~----~l~~~ 423 (454)
+..+..++.+.|++++|...++++....|+... +..+..++...|+.++|+..++++++..|.+. ..|. .+..+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHH
Confidence 778899999999999999999998877566433 44457788999999999999999999988843 3333 23333
Q ss_pred HHhcCCcCcHHHHHHHH
Q 012879 424 LAGVGRFGDAERLRRVM 440 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~ 440 (454)
+...+..++......++
T Consensus 401 ~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 401 ISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHhcCCccchhhHHHHH
Confidence 34444444333333333
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.1e-20 Score=187.02 Aligned_cols=402 Identities=9% Similarity=-0.032 Sum_probs=285.7
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-++....-.+......|+.++|+++|.... ..... +...+..+..++...|++++|..+++..++.. +.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~---~~~~~------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~ 82 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYR---VHMQL------PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQN 82 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 344455566677778899999999888886 32322 55668888888899999999999999888764 455
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHH
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYT 182 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 182 (454)
...+..+..++...|++++|+..+++..+ | +.. +..+..++...|+.++|+..+++..+ | +...+..+..++.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66777888888899999999999988864 3 344 77778888889999999999988775 3 3445566777888
Q ss_pred hcCChHHHHHHHHHHHHccCCCCCh------hhHHhHHHHHHc-----cCch---hHHHHHHHhhhhc-CCCCchHHHH-
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSE------ITILAVLPAIWQ-----NGDV---KSCQLIHGYGEKR-GFTAFDIRVL- 246 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~~~~- 246 (454)
..++.++|+..++.... .|+. ......+..... .+++ +.|.+.++.+.+. ...|.....+
T Consensus 162 ~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 162 NNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 88888889888876543 2221 112222222221 1223 6677777777754 1122111111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHhhhcCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cHHHHHHHH
Q 012879 247 ---NCLIDTYAKCGCIFSASKLFEDISVERKN-L-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP---NRVTFLSVL 318 (454)
Q Consensus 247 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~ 318 (454)
...+..+...|++++|++.|+++....++ + ..-..+...|...|++++|+..|+++.+..... .......+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11133445678899999999998876432 1 122225678888999999999999887643211 123455666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHH
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECE----------VLPD---IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWR 384 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 384 (454)
.++...|++++|..+++.+..... -.|+ ...+..+...+...|++++|++.++++... +.+...+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677888999999999998876411 0122 224456677888889999999999988777 34567788
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.+...+...|++++|++.++++++..|++...+...+..+.+.|++++|..+++++.+...
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8888888999999999999999999998888888888899999999999999988887543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.6e-19 Score=174.07 Aligned_cols=385 Identities=10% Similarity=-0.061 Sum_probs=286.3
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++.+.+...|+...+.. |+...|..+..+|.+.|++++|++.++... ...+. +...|..+..++...
T Consensus 140 ~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al---~l~p~------~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAAL---ELDPD------YSKALNRRANAYDGL 207 (615)
T ss_pred cCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHHc
Confidence 456677777787776654 567889999999999999999999999998 66555 778899999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----------------------------C
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-----------------------------R 138 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------------~ 138 (454)
|++++|...+..+...+. .+......++..+........+...++.-.. .
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999988876655431 1111111111111111111112222211110 0
Q ss_pred Cc---hhHHHHHHH---HHhcCCHHHHHHHHhhCCC-----C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC
Q 012879 139 NL---VTWNVMITG---LVKWGELEFARSLFEEMPC-----R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS 206 (454)
Q Consensus 139 ~~---~~~~~ll~~---~~~~~~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (454)
+. ..+..+... ....+++++|.+.|+...+ | ....++.+...+...|++++|+..|++..+. .+..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 00 011111111 1224688999999988764 2 3356888888999999999999999999874 3344
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...|..+...+...|++++|...++.+.+. .|.++.++..+..++...|++++|...|++.....| +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 678889999999999999999999999886 566889999999999999999999999999998877 56678888899
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hh-------HHHHHHHHH
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IK-------HYGCLIDML 357 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~ 357 (454)
+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+...+. .|+ .. .++.....+
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHH
Confidence 999999999999999988753 335678888899999999999999999998864 222 11 112222334
Q ss_pred HhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 358 GRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
...|++++|.+.+++.....| +...+..+...+...|++++|++.|+++.+..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 457999999999999877644 44578889999999999999999999999887653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.3e-19 Score=177.58 Aligned_cols=394 Identities=9% Similarity=-0.058 Sum_probs=302.4
Q ss_pred cCCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh
Q 012879 6 NSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA 85 (454)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 85 (454)
...++.+.+..++.......+ .+...+..+...+.+.|++++|.++|+... ...+. +...+..+..++.
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al---~~~P~------~~~a~~~la~~l~ 94 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKAL---SLEPQ------NDDYQRGLILTLA 94 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHH
Confidence 345677778888888876444 556679999999999999999999999988 55444 6677888889999
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSL 162 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~ 162 (454)
..|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+ |+ ...+..+...+...|..+.|++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 9999999999999998874 55666 88899999999999999999999985 43 44566777888899999999999
Q ss_pred HhhCCC-CCc------chHHHHHHHHHh-----cCCh---HHHHHHHHHHHHccCCCCChh-hHH----hHHHHHHccCc
Q 012879 163 FEEMPC-RNV------VSWTGIIDGYTR-----MNRS---NEALALFRKMVACEYTEPSEI-TIL----AVLPAIWQNGD 222 (454)
Q Consensus 163 ~~~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~~~~~~~~~-~~~----~l~~~~~~~~~ 222 (454)
++.... |+. .....+++.... .+++ ++|+..++.+.+.....|+.. .+. ..+..+...|+
T Consensus 173 l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 173 IDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 998775 221 122223333322 2234 778889998886312223321 111 11345567799
Q ss_pred hhHHHHHHHhhhhcCCC-CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-----hhHHHHHHHHHhcCChhHHH
Q 012879 223 VKSCQLIHGYGEKRGFT-AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-----VSWTSIISGFAMHGMGKEAV 296 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~ 296 (454)
.++|...|+.+.+.+.. |.+.. ..+..+|...|++++|+..|+++....|.. .....+..++...|++++|.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999987532 32222 335779999999999999999987765432 34566777889999999999
Q ss_pred HHHHHHHhCCC-----------CCcH---HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 297 ENFGRMQKVGL-----------KPNR---VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 297 ~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
.+++++.+... .|+. ..+..+...+...|+.++|++.++++... .+.+...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 99999987531 1232 24456667888999999999999999874 45557788899999999999
Q ss_pred hHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 363 LEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
+++|++.++++....|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999988565 5677777788999999999999999999999988744
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=4.7e-19 Score=175.75 Aligned_cols=415 Identities=10% Similarity=-0.004 Sum_probs=270.8
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...+++..+..| .++.++..+...|.+.|++++|+..+++.. ...+. |...+..+.. +
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv---~ldP~------n~~~~~~La~-i-- 121 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQL---KRHPG------DARLERSLAA-I-- 121 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcc------cHHHHHHHHH-h--
Confidence 44777788889999998888 778888999999999999999999999887 55443 4444444422 2
Q ss_pred cCCcchHhHHHHHHHHcCC--------------------------------------CCCchhHHHH-HHHHHhCCChhH
Q 012879 87 LSHPNLGTQLHAVISKVGF--------------------------------------QSHVYVNTAL-VNMYVSLGFLKD 127 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~--------------------------------------~~~~~~~~~l-~~~~~~~g~~~~ 127 (454)
+++.+|..+++++.+... .|+..+.... ..+|.+.|++++
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 666777777777665431 1122222333 667778888888
Q ss_pred HHHHHhhCCCC----------------------------------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 012879 128 SSKLFDEMPER----------------------------------NLVTWNVMITGLVKWGELEFARSLFEEMPC----- 168 (454)
Q Consensus 128 a~~~~~~~~~~----------------------------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----- 168 (454)
|+.++.++.+. +...+..+...|.+.|+.++|.++++++..
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 88888777531 222334556667778888888888877641
Q ss_pred CCcchH--------------------------------------------------------------------------
Q 012879 169 RNVVSW-------------------------------------------------------------------------- 174 (454)
Q Consensus 169 ~~~~~~-------------------------------------------------------------------------- 174 (454)
|...+|
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 000000
Q ss_pred -------------------HHHHHHHHhcCChHHHHHHHHHHHH-ccCC-------------------------------
Q 012879 175 -------------------TGIIDGYTRMNRSNEALALFRKMVA-CEYT------------------------------- 203 (454)
Q Consensus 175 -------------------~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------------------------------- 203 (454)
..+.-..+..|+.++|.++|++... .+..
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 0000111223444444444444332 0000
Q ss_pred -------------------------------CC--ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 204 -------------------------------EP--SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 204 -------------------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
++ +...|..+..++.. ++.++|...+...... .| +......+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P-d~~~~L~lA 516 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP-DAWQHRAVA 516 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC-chHHHHHHH
Confidence 11 22223333333332 4444555555554443 23 322233334
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 330 (454)
..+...|++++|...|+++....|+...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 44456777777777777766655555556666667777888888888888777653 22223333333444456888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
...+++..+. .|+...+..+..++.+.|++++|+..+++.....| +...+..+..++...|++++|++.++++++.
T Consensus 596 l~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888754 46777888888889999999999999998888744 4667778888888899999999999999999
Q ss_pred hcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 410 ERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
.|.++..+..++.++...|++++|...+++..+..
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99988889999999999999999999998887654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2e-17 Score=160.97 Aligned_cols=397 Identities=10% Similarity=-0.022 Sum_probs=229.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHH
Q 012879 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT 113 (454)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (454)
|...| ...+.|+++.|+..|++.. +..+. +......++..+...|+.++|+..+++..... +.......
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL---~~~P~------~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEES---KAGPL------QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHH---hhCcc------chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 44444 4568899999999999998 55544 32222388888889999999999999987211 22233333
Q ss_pred HHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--chHHHHHHHHHhcCChH
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPCRNV--VSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 188 (454)
.+...+...|++++|+++|+++.+ | +...+..++..+...++.++|++.++++...++ ..+..++..+...++..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 346688899999999999999985 3 455677788889999999999999999987444 44433333444466676
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcC-------------------------------
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG------------------------------- 237 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 237 (454)
+|++.++++.+. .|.+...+..++.++.+.|-...|.++..+-...-
T Consensus 187 ~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 799999999984 35567777888888888887776666555432110
Q ss_pred ------------------CCCchHH----HHHHHHHHHHhcCChhHHHHHHHHhhhcCC--ChhhHHHHHHHHHhcCChh
Q 012879 238 ------------------FTAFDIR----VLNCLIDTYAKCGCIFSASKLFEDISVERK--NLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 238 ------------------~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 293 (454)
..|+... +..-.+-++...|++.++++.|+.+..... ...+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0111101 111123334444555555555555554321 2223344455555555555
Q ss_pred HHHHHHHHHHhCC-----CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC----------CCC---hhHHHHHHH
Q 012879 294 EAVENFGRMQKVG-----LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV----------LPD---IKHYGCLID 355 (454)
Q Consensus 294 ~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~ 355 (454)
+|..+++++.... ..++......|.-++...+++++|..+++.+.+.... .|+ ...+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 5555555544321 0112222344455555555555555555555442110 011 111223344
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHH
Q 012879 356 MLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (454)
.+.-.|+..+|++.++++... +-|......+...+...|++.+|++.++.+....|.+..+....+.++...|++.+|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 444555555555555555444 2244445555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhc
Q 012879 435 RLRRVMDER 443 (454)
Q Consensus 435 ~~~~~~~~~ 443 (454)
.+.+.+...
T Consensus 505 ~~~~~l~~~ 513 (822)
T PRK14574 505 LLTDDVISR 513 (822)
T ss_pred HHHHHHHhh
Confidence 555554443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=4.6e-17 Score=161.74 Aligned_cols=394 Identities=11% Similarity=0.006 Sum_probs=298.4
Q ss_pred hhhhhHHHH-HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc-cCCcchHhHHHHHHHHcCCC
Q 012879 29 HHSQLFNTL-LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT-LSHPNLGTQLHAVISKVGFQ 106 (454)
Q Consensus 29 ~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~ 106 (454)
|++.+.... .+.|.+.|++++|++++..+. +.++. +..-...+..++.. .++ +.+..++.. .++
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~---k~~pl------~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk 244 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEAR---QQNTL------SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIF 244 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcc
Confidence 345544444 889999999999999999998 66655 66667777777777 466 666666442 334
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----CCchhHHHH------------------------------HHHH-
Q 012879 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-----RNLVTWNVM------------------------------ITGL- 150 (454)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l------------------------------l~~~- 150 (454)
.++..+..++..|.+.|+.++|.+.++++.. |+..+|.-+ +..+
T Consensus 245 ~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 245 TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999863 211111111 1111
Q ss_pred --------------------------------------------------------------HhcCCHHHHHHHHhhCCC
Q 012879 151 --------------------------------------------------------------VKWGELEFARSLFEEMPC 168 (454)
Q Consensus 151 --------------------------------------------------------------~~~~~~~~A~~~~~~~~~ 168 (454)
++.|+.++|.++|+....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 325 KEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred hccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 234566666666654321
Q ss_pred --------------------------------------------------------------------C--CcchHHHHH
Q 012879 169 --------------------------------------------------------------------R--NVVSWTGII 178 (454)
Q Consensus 169 --------------------------------------------------------------------~--~~~~~~~l~ 178 (454)
+ +...|..+.
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG 484 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLA 484 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHH
Confidence 0 122334444
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
.++.. +++++|+..+.+.... .|+......+...+...|+++.|...++++... .| +...+..+..++.+.|+
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p-~~~a~~~la~all~~Gd 557 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM-SNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC-CcHHHHHHHHHHHHCCC
Confidence 44444 6777888877777764 466555555566667999999999999998664 33 44556677888999999
Q ss_pred hhHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 259 IFSASKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+++|.+.|++.....|+. ..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...++..
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998876643 33333444555669999999999999886 467788889999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 338 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
... -+.+...+..+..++...|++++|++.+++.....| +...+..+..++...|++++|+..++++++..|.+..+
T Consensus 636 L~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 636 LEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 874 334567788888899999999999999999888745 57788999999999999999999999999999999989
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 417 YVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
....++...+..+++.|.+.+++-...++..
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999988877665543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.5e-17 Score=160.37 Aligned_cols=398 Identities=10% Similarity=-0.022 Sum_probs=294.6
Q ss_pred ccccCCCCCchhHHHHHHHHhhhhhhhhh-hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHH
Q 012879 3 ILQNSQTPNNITTQIHSHLLTTNSLLHHS-QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLI 81 (454)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 81 (454)
++.-+.++...+...+++.++..+ -+. .++ .++..+...|+.++|+..+++.. ..... .......+.
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~---~p~n~------~~~~llalA 109 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ---SSMNI------SSRGLASAA 109 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhc---cCCCC------CHHHHHHHH
Confidence 344566777888888999888886 332 333 88888889999999999999986 22211 344444456
Q ss_pred HHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHH
Q 012879 82 RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFA 159 (454)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A 159 (454)
..+...|++++|.++++++.+.. +-++..+..++..+...++.++|++.++++.+ |+...+..++..+...++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 78889999999999999999876 45677778888999999999999999999986 4434443333333345666569
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHH--------------------------------------------
Q 012879 160 RSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALA-------------------------------------------- 192 (454)
Q Consensus 160 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~-------------------------------------------- 192 (454)
++.++++.+ | +...+..++.++.+.|-...|.+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999988874 3 23444445555544444433333
Q ss_pred ----HHHHHHHccCCCCCh-hhHH----hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 193 ----LFRKMVACEYTEPSE-ITIL----AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 193 ----~~~~~~~~~~~~~~~-~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
-++.+...-+..|.. ..|. -.+.++...|+..+++..++.+...+... ...+-..+.++|...+++++|+
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHH
Confidence 333333311122322 2221 23446778899999999999999887443 5668889999999999999999
Q ss_pred HHHHHhhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------CCc--HH-HHHHHHHHHh
Q 012879 264 KLFEDISVERK-------NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL-----------KPN--RV-TFLSVLNACS 322 (454)
Q Consensus 264 ~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~--~~-~~~~l~~~~~ 322 (454)
.+|+.+....+ +......|.-+|...+++++|..+++++.+... .|+ -. .+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999876531 333457788999999999999999999987421 122 22 3344567788
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
..|+..+|++.++.+... -+-|......+.+.+...|.+.+|++.++......| +..+....+.++...|++++|..
T Consensus 428 ~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999999764 455788889999999999999999999988777755 45677788889999999999999
Q ss_pred HHHHHHHhhcCCCCc
Q 012879 402 VTRKILEMERGYGGD 416 (454)
Q Consensus 402 ~~~~~~~~~~~~~~~ 416 (454)
+.+++++..|++..+
T Consensus 506 ~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 506 LTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhCCCchhH
Confidence 999999999998743
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=7.2e-17 Score=138.94 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=250.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCC-CChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPL-FDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
+...+.+.+++.+|+++|+... .+-+. .+. ......+.+.-.+.+.|.++.|+.-|+...+.. |+..+--.|
T Consensus 243 igni~~kkr~fskaikfyrmal---dqvps--ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl 315 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMAL---DQVPS--INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNL 315 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHH---hhccc--cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhh
Confidence 3345667777888888888776 33222 100 012334444455778888888888888877753 665554445
Q ss_pred HHHHHhCCChhHHHHHHhhCCC----------------CCchhHHHHH-----HH-------------------------
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPE----------------RNLVTWNVMI-----TG------------------------- 149 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~ll-----~~------------------------- 149 (454)
+-++..-|+-++..+.|..|.. |+....+..| .-
T Consensus 316 ~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 316 IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc
Confidence 5555567788888888877752 2222222111 11
Q ss_pred ---------------------------------HHhcCCHHHHHHHHhhCCCCCcchHHHHH------HHHHhcCChHHH
Q 012879 150 ---------------------------------LVKWGELEFARSLFEEMPCRNVVSWTGII------DGYTRMNRSNEA 190 (454)
Q Consensus 150 ---------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a 190 (454)
+.+.|+++.|+++++-+.+.|..+-.+.. +.+.--.++..|
T Consensus 396 ~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~a 475 (840)
T KOG2003|consen 396 PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADA 475 (840)
T ss_pred cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHH
Confidence 22334444444444333332222111111 111111223333
Q ss_pred HHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
.++-+..+.. ..-+......-.......|++++|.+.+++....... -......+.-.+-..|++++|++.|-++.
T Consensus 476 qqyad~aln~--dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 476 QQYADIALNI--DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHHHHHhcc--cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 3333333221 1122222222233344568899999999998876321 12223334446778899999999998887
Q ss_pred hc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 271 VE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 271 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
.. ..+..+.-.+...|-...+..+|++++-+.... ++.|+..+..|...|-+.|+-.+|.+.+-.--+ -++.+..+
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~ 628 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIET 628 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHH
Confidence 65 346777777888899999999999999877664 566788999999999999999999887665544 56778899
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHH-cCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS-FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
...|..-|....-+++|+.+|++..-..|+..-|..++..|. +.|++.+|.++++...+.-|.+......+++.+...|
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999999999999999998777899999999987765 6899999999999999999999988888888887776
Q ss_pred Cc
Q 012879 429 RF 430 (454)
Q Consensus 429 ~~ 430 (454)
-.
T Consensus 709 l~ 710 (840)
T KOG2003|consen 709 LK 710 (840)
T ss_pred ch
Confidence 43
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.3e-15 Score=141.26 Aligned_cols=423 Identities=12% Similarity=0.062 Sum_probs=312.2
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
..+.+.+.+.|..+++..+ +|+...--=.......+++..|+.+|..+. ...+...| |.. -.+..++.+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al---~inp~~~a---D~r--Igig~Cf~kl 212 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKAL---RINPACKA---DVR--IGIGHCFWKL 212 (1018)
T ss_pred CccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHH---hcCcccCC---Ccc--chhhhHHHhc
Confidence 3346788888888888887 887776666666677889999999999987 33333223 443 2334667789
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCC---hhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---LKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARS 161 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~ 161 (454)
|+.+.|...|....+.+ |-++.++..|...-....+ +..+...+...-. .++...+.|.+.|.-.|+++.+..
T Consensus 213 ~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred cchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 99999999999988865 2344444444433333333 4555555555442 578889999999999999999999
Q ss_pred HHhhCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh--hhHHhHHHHHHccCchhHHHHHHHhh
Q 012879 162 LFEEMPCRN------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE--ITILAVLPAIWQNGDVKSCQLIHGYG 233 (454)
Q Consensus 162 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (454)
+...+...+ ...|-.+.++|-..|++++|..+|-+..+. .++. ..+.-+...+.+.|+++.+...|+.+
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 988776422 245788999999999999999999988864 3443 44567788899999999999999999
Q ss_pred hhcCCCCchHHHHHHHHHHHHhcC----ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH----h
Q 012879 234 EKRGFTAFDIRVLNCLIDTYAKCG----CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQ----K 304 (454)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~ 304 (454)
.+. .|.+..+...|...|...+ ..+.|..++.+.....| |...|-.+...+... +...++..|.... .
T Consensus 369 ~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 369 LKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILES 445 (1018)
T ss_pred HHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHH
Confidence 987 5768888888888888775 56777788877777644 667777777766654 4444477666543 4
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC--CCCCh------hHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE--VLPDI------KHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+-.+.+...|.+...+...|++++|...|........ ..++. .+--.+..++-..++.+.|.+.|..+...
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45557788899999999999999999999998876411 12222 22334666777788999999999999888
Q ss_pred CCcH-hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 377 ITDV-VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 377 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.|.- ..|-.++......++..+|...+++++..+..++.++..++..+.+...+..|.+-++.+.+.-...
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 6764 3455555444456888999999999999999999999999999999999999998777766654433
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.5e-16 Score=145.86 Aligned_cols=419 Identities=10% Similarity=0.042 Sum_probs=254.1
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchH
Q 012879 14 TTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93 (454)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a 93 (454)
+.++.....+..+ .|+.+.+.|.+.|.-.|++..+..+.+.+..-...+.. -...|-.+.+++-..|++++|
T Consensus 255 ~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~------~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 255 GVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI------KAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHhhccHHHH
Confidence 3334444444444 78888999999999999999999999888731111111 445688889999999999999
Q ss_pred hHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcC----CHHHHHHHHhhC
Q 012879 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWG----ELEFARSLFEEM 166 (454)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~----~~~~A~~~~~~~ 166 (454)
..+|-+..+....--+..+--+...+.+.|+++.+...|+.+.+ | +..+.-.+...|+..+ ..+.|..++...
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 99998887765222244556688889999999999999998875 3 3345555556666554 456677777666
Q ss_pred CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHH----HccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcC--
Q 012879 167 PCR---NVVSWTGIIDGYTRMNRSNEALALFRKMV----ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG-- 237 (454)
Q Consensus 167 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 237 (454)
.++ |...|-.+...+... ++..++.+|.... .. +.++.+...+.+.......|+++.|...|......-
T Consensus 407 ~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 553 344555554444443 3333366665443 23 444667778888888888888888888877776541
Q ss_pred -CCC-----chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 238 -FTA-----FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 238 -~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
..+ ++..+-..+..++-..++++.|.+.|..+....|+-+ .|-.+.......++..+|...+.+..+.. ..+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 111 1122334456666666777777777777777666543 33333322333456667777776665531 222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh------------cCChHHHHHHHhcCCCC-C
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR------------AGRLEQAEKTALGIPSE-I 377 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~-~ 377 (454)
+..+..+...+.+..++..|.+-|....+.....+|..+.-+|.+.|.+ .+..++|++.|.++... +
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333334445555555555655555554442223444444444443321 22355566666655555 2
Q ss_pred CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 378 TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 378 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
-|...-+-+...++..|++.+|..+|.++.+...+.+.+|..++.+|...|+|-.|+++|+...+.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666665556666666666666666666666666655544
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.1e-14 Score=126.31 Aligned_cols=407 Identities=13% Similarity=0.100 Sum_probs=311.0
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (454)
+...|-.....=..++++..|..+|+++. ..... +...|..-+..=.+.+.+..|..+++..+..-...|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERAL---dvd~r------~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd- 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERAL---DVDYR------NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD- 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hcccc------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-
Confidence 44455555555556778889999999998 65555 677888888888899999999999999887532222
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCC--CCCchhHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcC
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMP--ERNLVTWNVMITGLVKWGELEFARSLFEEMP--CRNVVSWTGIIDGYTRMN 185 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~ 185 (454)
..|--.+..--..|++..|.++|++-. +|+..+|++.|+.=.+-+.++.|..++++.. .|++.+|-...+.-.+.|
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 344455556667899999999999877 5999999999999999999999999999865 699999999999999999
Q ss_pred ChHHHHHHHHHHHHccCC-CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch--HHHHHHHHHHHHhcCChhHH
Q 012879 186 RSNEALALFRKMVACEYT-EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD--IRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 262 (454)
+...|..+|+...+.-|. ..+...+.+....-.....++.|.-+|+-.... .|.+ ...|..+...--+-|+....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhh
Confidence 999999999998874222 112233444444446677888999999988876 4434 55666666666666776555
Q ss_pred HHH--------HHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH-------HHHHHHHHH---hc
Q 012879 263 SKL--------FEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV-------TFLSVLNAC---SH 323 (454)
Q Consensus 263 ~~~--------~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~ 323 (454)
... |+++....| |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 334444444 7778888888888889999999999998876 455321 222221122 25
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG----RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
..+.+.+.++|+...+ -++....||..+--.|+ ++.++..|.+++.......|...+|...|..-.+.++++..
T Consensus 379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 6788999999999887 45556677766655444 67899999999999988889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCC
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 451 (454)
..++++.++-+|.+..+|...+..-...|+.+.|..+|+-.+.......|..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 9999999999999999999999999999999999999988877665555543
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.3e-15 Score=127.80 Aligned_cols=394 Identities=13% Similarity=0.035 Sum_probs=271.8
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC-hhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD-SFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-...+-...+.|.++|++++|++.|.+.. +.. | + +..|.....+|...|+++++.+.-...++.+ |+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI---~l~----p---~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~ 181 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAI---ELC----P---DEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PD 181 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHH---hcC----C---CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cH
Confidence 34456667788999999999999999998 433 5 5 6788999999999999999999888887754 43
Q ss_pred -chhHHHHHHHHHhCCChhHHHHHHhhCC--C-CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCc----------
Q 012879 109 -VYVNTALVNMYVSLGFLKDSSKLFDEMP--E-RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNV---------- 171 (454)
Q Consensus 109 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~---------- 171 (454)
+-.+..-..++-..|++++|+.=..-.. + -+..+-..++.-..+..-...+.+-+..=.. |+.
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 4466677778888898888764221110 0 0000011111111111111222222221011 111
Q ss_pred -------------chHHHHHHHHHh--cC---ChHHHHHHHHHHHHccCCCCChh-----------hHHhHHHHHHccCc
Q 012879 172 -------------VSWTGIIDGYTR--MN---RSNEALALFRKMVACEYTEPSEI-----------TILAVLPAIWQNGD 222 (454)
Q Consensus 172 -------------~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~ 222 (454)
.....+..++.. .+ .+..|.+.+.+-.......++.. +.......+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 122222222211 11 34444444444322111122222 22222334456788
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
.-.+..-|+..++.. |.+...|--+..+|....+.++..+.|++.....| |+.+|..-.+.+.-.+++++|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999873 43555587888899999999999999999998866 788899988888889999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc--
Q 012879 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-- 379 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 379 (454)
.+... +-+...|..+.-+.-+.+.+++++..|++.++ .++..+.+|+.....+...+++++|.+.|+......|+
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 88763 22556676777677788999999999999988 56677889999999999999999999999988777443
Q ss_pred -------HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 380 -------VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 380 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+.+...++..- -.+++..|+.+++++++.+|....+|..|+....+.|+.++|+++|++-.
T Consensus 497 ~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12222222222 34899999999999999999999999999999999999999999998753
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=3e-18 Score=150.13 Aligned_cols=260 Identities=18% Similarity=0.107 Sum_probs=111.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCC-hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPS-EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
.+...+.+.|++++|++++++.... ..+|+ ...|..+...+...++.+.|...++++...+ +.++..+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc--ccccccccccccc-c
Confidence 4567788889999999999665543 32344 4444455556677888999999999888764 3366677777777 7
Q ss_pred hcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHH
Q 012879 255 KCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 333 (454)
..+++++|.+++...-+..+++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999988876666677778888888999999999999999977532 345677788888889999999999999
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 334 FDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 334 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
+++..+. .| +......++..+...|+.+++.++++..... +.|+..+..+..++...|+.++|...++++.+..|
T Consensus 169 ~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999875 34 4777888899999999999987777766555 34667788899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 412 GYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.|+.....++.++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999877654
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.2e-14 Score=135.57 Aligned_cols=334 Identities=14% Similarity=0.125 Sum_probs=247.0
Q ss_pred HHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhC---CCCCcchHHHHHHHHHhcCChH
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEM---PCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
..+.....|++++|..++.++.+ .....|..|...|-..|+.+++...+-.. ...|...|..+.......|.++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 33344445888888888888875 34567888888888888888887766433 3355677777888888888888
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH----HHHHHHHHhcCChhHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL----NCLIDTYAKCGCIFSASK 264 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~ 264 (454)
.|.-.|.+.++. .+++...+..-...|-+.|+...|...|.++.... +|.+..-+ ...++.|...++-+.|.+
T Consensus 225 qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888888873 45566666666777888888888888888888763 22232222 334566667777788888
Q ss_pred HHHHhhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------------------------CCcHHHH
Q 012879 265 LFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL---------------------------KPNRVTF 314 (454)
Q Consensus 265 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~p~~~~~ 314 (454)
.++..... .-+...+++++..+.+...++.|......+..... .++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88877664 23555678888888888888888888777765222 2222221
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--CcHhHHHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI--TDVVVWRTLLGAC 390 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~ 390 (454)
.+.-++......+....+....... .+ .-+...|.-+.++|...|++.+|+.+|..+.... .+...|-.+..+|
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 2233444555555555555555554 53 3356788899999999999999999999999883 3466899999999
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcC
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~ 453 (454)
...|.++.|++.+++++...|.+..+..+|...+.+.|+.++|.+.+..+..-+....++++|
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999999988666555677776
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-13 Score=119.12 Aligned_cols=417 Identities=9% Similarity=0.057 Sum_probs=318.3
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
..+.+.++.+|+..+.-.. .+...|-..+..=.++.....|..+|++.. ..-+. -...|-..+..=-..
T Consensus 86 q~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAv---t~lPR------VdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAV---TILPR------VDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHH---Hhcch------HHHHHHHHHHHHHHh
Confidence 3455678888888888876 899999999999999999999999999997 33333 223455555566678
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC--CCCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP--ERNLVTWNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
|++..|.++|+.-.+ ..|+...|++.|+.-.+.+.++.|..++++.+ .|++.+|-.....=.+.|....|..+|+.
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999998876 57999999999999999999999999999976 69999999999999999999999999987
Q ss_pred CCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHH--------
Q 012879 166 MPC------RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLI-------- 229 (454)
Q Consensus 166 ~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~-------- 229 (454)
..+ .+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|......--+-|+.......
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 664 23345666666666778889999999888873 3333 34455555544555665443322
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh---hHHHHH-----HHH---HhcCChhHHHHH
Q 012879 230 HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV---SWTSII-----SGF---AMHGMGKEAVEN 298 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~l~-----~~~---~~~g~~~~A~~~ 298 (454)
++..++. .|.|-.+|-..+..-...|+.+...++|++....-|... .|...| -++ ....+.+.+.++
T Consensus 311 YE~~v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 311 YEKEVSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444444 455777888888888888999999999999887744321 222222 122 246788999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNAC----SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
++..++. ++...+||..+--.| .++.+...|.+++.... |..|...+|...|..-.+.+.++....++++..
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988884 555667776554444 36678899999999887 778999999999999899999999999999988
Q ss_pred CCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC--CCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 375 SEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 375 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.-.| +..+|......-...|+.+.|..+|+-++....-+ ...|-..++.-...|.++.|..+++++.++.-
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 8744 56788888887788899999999999888754433 33566777777888999999999999887643
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1.3e-12 Score=118.01 Aligned_cols=415 Identities=10% Similarity=0.024 Sum_probs=229.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHH-HHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcc
Q 012879 13 ITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQL-QQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPN 91 (454)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 91 (454)
.++.+....++.-+ -+...|.+-...=-.+|+.+...++..+- ..+...|+. . +...|-.=...|-..|..-
T Consensus 424 nAkkvLNkaRe~ip--td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~--i---~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 424 NAKKVLNKAREIIP--TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE--I---NRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHhhCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee--e---cHHHHHHHHHHHhhcCChh
Confidence 33444444444433 44445555444445555555555555432 112234444 4 4555555555555555555
Q ss_pred hHhHHHHHHHHcCCCCC--chhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHH----------------------
Q 012879 92 LGTQLHAVISKVGFQSH--VYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWN---------------------- 144 (454)
Q Consensus 92 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~---------------------- 144 (454)
.++.+....+..|+.-. ..||+.-...|.+.+.++-|..+|....+ .+...|.
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555555554443321 23444444555555555555555544443 1222333
Q ss_pred ------------HHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhh
Q 012879 145 ------------VMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209 (454)
Q Consensus 145 ------------~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (454)
....-+-..|++..|..++.+.-+ | +...|..-+.......+++.|..+|.+.... .|+...
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~---sgTeRv 653 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERV 653 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchh
Confidence 333334445555555555554433 2 2234555555555555555555555555432 445555
Q ss_pred HHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHh
Q 012879 210 ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAM 288 (454)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~ 288 (454)
|.--+...--.+..++|.+++++..+. .|.-...|..+.+.+-+.++++.|...|..-...-|+ +..|-.+...=-+
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 544444444555555555555555554 3434455555555555555666655555555444442 3344444444455
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|.+-.|..++++..-.+.. +...|-..|+.=.+.|+.+.|..++.+..+. .+.+...|..-|....+.++-.+...
T Consensus 732 ~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHH
Confidence 55566666666655554322 4455555555555666666666666555552 33344455555555555555444444
Q ss_pred HHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 369 TALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 369 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.+++.. .|+.+.-.+...+....++++|.+.|.+++..+|++..+|..+...+.+.|.-++-.+++........
T Consensus 809 ALkkce---~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 809 ALKKCE---HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHhcc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 444333 25566666777788888999999999999999999999999999999999999999999998876544
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.9e-16 Score=138.79 Aligned_cols=257 Identities=16% Similarity=0.093 Sum_probs=87.2
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcC-CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcC
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWG 154 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~ 154 (454)
.+...+...|++++|.+++....... .+.|+..|..+...+...++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667778888888888886544433 2445556666666777778888888888877752 23355555555 6777
Q ss_pred CHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHh
Q 012879 155 ELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGY 232 (454)
Q Consensus 155 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (454)
++++|.+++...-+ +++..+..++..+...++++++.++++........+.+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777765533 4555666677777777777777777777665433345566666666777777777777777777
Q ss_pred hhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 012879 233 GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311 (454)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 311 (454)
..+. .|.++.+...++..+...|+.+++.++++...... .|+..+..+..++...|+.++|+..|++..+.. +.|.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 7775 45466667777777777777777666666665552 355556666677777777777777777766542 2355
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.+...+..++...|+.++|.++.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5666666777777777777766665543
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1e-13 Score=127.05 Aligned_cols=280 Identities=12% Similarity=-0.017 Sum_probs=159.3
Q ss_pred CCChhHHHHHHhhCCCC--CchhHHHH-HHHHHhcCCHHHHHHHHhhCCC--CCcchHH--HHHHHHHhcCChHHHHHHH
Q 012879 122 LGFLKDSSKLFDEMPER--NLVTWNVM-ITGLVKWGELEFARSLFEEMPC--RNVVSWT--GIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~ 194 (454)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666666654432 12222222 2333566666666666666654 2222221 2244566667777777777
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH------HHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI------RVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
++..+. .|-+......+...+.+.|+++.+.+++..+.+.+..++.. ..|..++.......+.+...++++.
T Consensus 177 ~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 666653 34445566666666666677777776666666654432111 1222333333334445555556665
Q ss_pred hhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh
Q 012879 269 ISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI 347 (454)
Q Consensus 269 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 347 (454)
+....| ++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCH
Confidence 554433 5556666667777777777777777666653 3333211 223333446667777777666653 33344
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..+..+...+.+.|++++|.+.|+......|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55566666677777777777777776666666666666777777777777777777766543
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=9.8e-13 Score=112.98 Aligned_cols=404 Identities=10% Similarity=0.047 Sum_probs=266.0
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh--ccCCcchH-hHHHHHHHHcC--
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA--TLSHPNLG-TQLHAVISKVG-- 104 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~-- 104 (454)
.+.+=|.|+. +..+|....+.-+|+.|. ..|+. . +...-..|++..+ .+.++--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~---~e~~~--v---S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~ 185 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMR---SENVD--V---SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED 185 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHH---hcCCC--C---CHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc
Confidence 3445666665 456789999999999998 77766 4 5554445544422 22221111 12222222222
Q ss_pred -----------------CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 105 -----------------FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 105 -----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.+-+..++.++|.+.++-...+.|.+++++... .+..+||.+|.+-.-..+ .+++
T Consensus 186 S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 186 STSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred cccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 345667888999999998889999999888764 455677777765443333 4455
Q ss_pred hhCC----CCCcchHHHHHHHHHhcCChHH----HHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH-HHHHHHhhh
Q 012879 164 EEMP----CRNVVSWTGIIDGYTRMNRSNE----ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS-CQLIHGYGE 234 (454)
Q Consensus 164 ~~~~----~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 234 (454)
.+|. .||..|+|+++.+..+.|+++. |.+++.+|.+. |+.|+..+|..++..+.+.++..+ +..++..+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 5554 4899999999999999998765 46677888888 999999999999998888888744 333333333
Q ss_pred h----cC---CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc------CCCh---hhHHHHHHHHHhcCChhHHHHH
Q 012879 235 K----RG---FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE------RKNL---VSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 235 ~----~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~---~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
. .. ..|.+...|...+..|.+..+.+-|.++-.-+... +|+. .-|..+....++....+.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 21 23445667777778888888888888876655543 2332 2355666777888888888899
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-Ch--------HH----
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG-RL--------EQ---- 365 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~---- 365 (454)
|+.|.-.-.-|+..+...++++....|.++-.-++|..++.- |..........+...+++.. .+ ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 999988777888889999999988888888888888888765 54444444444444444433 11 00
Q ss_pred -HHHHHh-------cCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHH---HHHHHHHhcCCcCc
Q 012879 366 -AEKTAL-------GIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYV---LMYNILAGVGRFGD 432 (454)
Q Consensus 366 -A~~~~~-------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~---~l~~~~~~~g~~~~ 432 (454)
|..+++ ++....-.....+...-.+.+.|..++|-+++......+.. -.+..+ .+.+.-.+..+.-.
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 111111 12222234456667777788999999999999988765544 122333 34455556677888
Q ss_pred HHHHHHHHhhcccccC
Q 012879 433 AERLRRVMDERNAFKV 448 (454)
Q Consensus 433 a~~~~~~~~~~~~~~~ 448 (454)
|..+++-+...+....
T Consensus 580 A~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPIC 595 (625)
T ss_pred HHHHHHHHHHcCchhh
Confidence 8888888877666544
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.2e-12 Score=122.58 Aligned_cols=367 Identities=12% Similarity=0.037 Sum_probs=248.3
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
|.+...-.....+.-.|+.++|.+++.++. .+.+. ....|..|...|-..|+.+++...+-.+.-.+ +.|
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvI---kqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d 206 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVI---KQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKD 206 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC
Confidence 444444455555555699999999999988 66666 77789999999999998888887765544333 556
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCch---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--------chHHHH
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLV---TWNVMITGLVKWGELEFARSLFEEMPCRNV--------VSWTGI 177 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l 177 (454)
...|..+.....+.|+++.|.-+|.+..+.++. ..---...|-+.|+...|.+.|.++.+-++ ..--..
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 788888888888899999999999888763333 333445678888999998888888775222 122334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC-----------------
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA----------------- 240 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 240 (454)
++.+...++.+.|.+.++.....++-..+...+++++..+.+...++.+.............+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 566777777788888888877754556667778888888888888888887776665521111
Q ss_pred ---------chHHH-HHHHHHHHHhcCChhHHHHHHHHhhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 241 ---------FDIRV-LNCLIDTYAKCGCIFSASKLFEDISVERK--NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 241 ---------~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
.+..+ ...+.-...+.+...+++..|-......| +...|.-+..+|...|++..|+.+|..+.....-
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 12222 11122222233334444433333322212 4556777888888889999999998888876444
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------CC
Q 012879 309 PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE----------IT 378 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p 378 (454)
-+...|-.+..+|...|..++|.+.|+.+... -+.+...--.|...+.+.|+.++|.+++..+... .|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 46678888888888888889999888888864 2223445556777788889999888888886532 23
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
+....-.....+...|+.++-+.+...++
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444445566677777776655555554
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=5.8e-12 Score=113.86 Aligned_cols=400 Identities=11% Similarity=0.055 Sum_probs=260.5
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHh
Q 012879 15 TQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGT 94 (454)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~ 94 (454)
.++++.-++.-| .++..|-..++ -.+.+.|.-++.+.. +- +|. +...| -++++..-++.|.
T Consensus 366 ~RVlRKALe~iP--~sv~LWKaAVe----lE~~~darilL~rAv---ec----cp~--s~dLw----lAlarLetYenAk 426 (913)
T KOG0495|consen 366 KRVLRKALEHIP--RSVRLWKAAVE----LEEPEDARILLERAV---EC----CPQ--SMDLW----LALARLETYENAK 426 (913)
T ss_pred HHHHHHHHHhCC--chHHHHHHHHh----ccChHHHHHHHHHHH---Hh----ccc--hHHHH----HHHHHHHHHHHHH
Confidence 455555555554 66666665543 455666888888876 32 231 33333 3455566677788
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 012879 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVKWGELEFARSLFEEM 166 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 166 (454)
.+++..++. ++-+..+|.+....--..|+.+...+++++-.. -+-..|-.=...|-..|..-.+..+....
T Consensus 427 kvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av 505 (913)
T KOG0495|consen 427 KVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV 505 (913)
T ss_pred HHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH
Confidence 888888775 677888888888877888888888888776541 23344555555566666666666665554
Q ss_pred CC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 167 PC------RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 167 ~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
.. .--.||+.-...|.+.+.++-|..+|...++ -++.+...|......--..|..+....+++++... .|
T Consensus 506 igigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~p 581 (913)
T KOG0495|consen 506 IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CP 581 (913)
T ss_pred HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CC
Confidence 32 1234677777777777777777777777776 44555566666666556667777777777777775 45
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.....|......+-..|++..|..++..+.+..| +...|-..+..-..+.+++.|..+|.+.... .|+...|..-+.
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSAN 659 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhH
Confidence 4566666666667777777777777777766655 4456666667777777777777777766653 456666655555
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhH
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 398 (454)
.--..++.++|.+++++..+. ++.-...|..+...+-+.++++.|.+.|..-....|+ +..|-.|...--+.|..-+
T Consensus 660 ~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 555567777777777777663 3333455666667777777777777777766666444 3455555555566677777
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
|..++++..-.+|.+...|...+++-.+.|+.+.|..++.+..+
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766655443
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4e-13 Score=115.29 Aligned_cols=353 Identities=12% Similarity=0.097 Sum_probs=194.3
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.+..+|.++|.++|+-...++|.+++.+.. ....+ . +..+||.+|.+-.-... .+++.+|....+.||
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~---~~k~k--v---~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHR---AAKGK--V---YREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHH---Hhhhe--e---eHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 677899999999999999999999998887 55555 5 88899998887554332 788888988888999
Q ss_pred chhHHHHHHHHHhCCChhHHHHHH----hhCC----CCCchhHHHHHHHHHhcCCHHH-HHHHHhhCCC-----------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLF----DEMP----ERNLVTWNVMITGLVKWGELEF-ARSLFEEMPC----------- 168 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~~----------- 168 (454)
..|+|+++.+..+.|+++.|.+.+ .+|. +|...+|..+|..+++.++..+ |..++..+..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 999999999999999887765544 3333 3667777777777777666544 2333322210
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc---CCCCCh---hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc
Q 012879 169 -RNVVSWTGIIDGYTRMNRSNEALALFRKMVACE---YTEPSE---ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF 241 (454)
Q Consensus 169 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (454)
.|...|...+..|.+..+.+-|.++-.-..... .+.|+. ..|..+....+.....+.....|+.++-.-..|
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p- 431 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP- 431 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC-
Confidence 122334445555555555555554433332210 111211 123333344444444444444444444433333
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH---HHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV---TFLSVL 318 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~ 318 (454)
+..+...++++..-.|.++-.-+++.++... ...-+-+--++++..|....+.|+.. -+....
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~--------------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEY--------------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHh--------------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 4444444444444444444444444443331 00001111122222222222222211 111111
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C---CcHhHHHHHHHHHHc
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---I---TDVVVWRTLLGACSF 392 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---p~~~~~~~l~~~~~~ 392 (454)
.-|. ..-.+.....-.++.+. .+ .....+.+.-.+.+.|+.++|.+++.-+..+ . |.....--+++....
T Consensus 498 ak~a-ad~~e~~e~~~~R~r~~-~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 498 AKCA-ADIKEAYESQPIRQRAQ-DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHH-HHHHHHHHhhHHHHHhc-cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 1110 00011111122233332 33 3456677777889999999999988877433 3 333344456677778
Q ss_pred CCChhHHHHHHHHHHHhhcC
Q 012879 393 HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~ 412 (454)
.++...|+.+++-|.+.+..
T Consensus 574 ~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCCHHHHHHHHHHHHHcCch
Confidence 88899999999988765444
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=4e-13 Score=123.88 Aligned_cols=285 Identities=12% Similarity=-0.024 Sum_probs=179.8
Q ss_pred HhCCChhHHHHHHhhCCC--CCch-hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc--hHHHHHHHHHhcCChHHHHH
Q 012879 120 VSLGFLKDSSKLFDEMPE--RNLV-TWNVMITGLVKWGELEFARSLFEEMPC--RNVV--SWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 120 ~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~~ 192 (454)
...|+++.|.+.+.+..+ |+.. .+-....+..+.|+.+.|.+.+.+..+ |+.. ........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 356788888877776654 3322 233334556677888888888877543 3332 23334677777888888888
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH---HHHhcCChhHHHHHHHHh
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID---TYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~ 269 (454)
.++.+.+. .|-+...+..+...+...|+++.+.+.+..+.+.+..++.. ....-.. .....+..+.+.+.+..+
T Consensus 175 ~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE-FADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888774 34456677777888888888888888888888775433121 1111111 112222222222333333
Q ss_pred hhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH--H-HHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 270 SVER-----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT--F-LSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 270 ~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
.... .++..+..+...+...|+.++|.+++++..+.. |+... + ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3322 266777778888888888888888888887753 33321 1 111122334567777888887777642
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhc--CCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALG--IPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.-.|+.....++...+.+.|++++|.+.|+. ..+..|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2222215566778888888888888888883 4444678777888888888888888888888876543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-12 Score=113.42 Aligned_cols=302 Identities=13% Similarity=0.126 Sum_probs=200.0
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC------CchhHHHHHHHHHhcCCHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER------NLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
....+++.+-.+.....|++.+...-+....+.-...|+|+|+.+|+++.+. |..+|..++-.--....+.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3345566666666666676655555555555556677888888888888763 3346665553333322222222
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 161 SLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
...-.+.+--+.|...+.+-|.-.++.++|...|++.++. .+.....|+.+..-|....+...|.+.++.+++. .|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cc
Confidence 2222333445567777777788888888888888888773 3444667777778888888888888888888875 56
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.|-..|..|.++|.-.+...-|+-.|++....+| |...|.+|..+|.+.++.++|++.|.+....|-. +...+..|..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak 474 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK 474 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 6788888888888888888888888888887766 7778888888888888888888888888776533 5567778888
Q ss_pred HHhcCCChHHHHHHHHHHHHhc---CC-CC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEEC---EV-LP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~---~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 394 (454)
.|-+.++.++|...|+...+.. |. .| ......-|..-+.+.+++++|..+......- ..
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----------------~~ 538 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----------------ET 538 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----------------Cc
Confidence 8888888888888777766531 22 22 1222233455566777777766544433221 23
Q ss_pred ChhHHHHHHHHHHHh
Q 012879 395 NVEMGERVTRKILEM 409 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~ 409 (454)
..++|..++++....
T Consensus 539 e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHh
Confidence 445666666666543
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=4.3e-13 Score=110.99 Aligned_cols=286 Identities=14% Similarity=0.088 Sum_probs=180.8
Q ss_pred CChhHHHHHHhhCCCCCchhHH---HHHHHHHhcCCHHHHHHHHhhCCC-CCcc------hHHHHHHHHHhcCChHHHHH
Q 012879 123 GFLKDSSKLFDEMPERNLVTWN---VMITGLVKWGELEFARSLFEEMPC-RNVV------SWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 123 g~~~~a~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~~ 192 (454)
++.|+|.+.|-+|.+.|..|+. ++.+.|-+.|..+.|+.+.+.+.+ ||.. ..-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444443333222 233444444444444444444432 2211 22234455566666666666
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch---HHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD---IRVLNCLIDTYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 269 (454)
+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+.. ...|..|...+....+++.|..++.+.
T Consensus 129 ~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666665531 122334556666666666666666666666665544322 235666777777788899999999988
Q ss_pred hhcCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChh
Q 012879 270 SVERKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIK 348 (454)
Q Consensus 270 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 348 (454)
.+..|+.+ .--.+.......|++++|.+.++...+.+..--+.+...|..+|.+.|+.++...++..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 88766444 333455778889999999999999888866666677888889999999999999999988865 33444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc---CCChhHHHHHHHHHHHhhcCC
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF---HGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 413 (454)
.-..+.+.-....-.+.|...+.+-....|+...+..++..... -|...+-...+++|+......
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 44555555555666677777766666666999999999887654 345666677777777655443
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.1e-14 Score=129.82 Aligned_cols=283 Identities=12% Similarity=-0.025 Sum_probs=221.6
Q ss_pred CCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-CChhhHHhHHHHHHccCchhHHHHH
Q 012879 154 GELEFARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTE-PSEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 154 ~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
-+..+|...|..+.+ +| ......+.++|...+++++|.++|+.+.+..... -+..+|.+.+..+-+.-. --.+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~---Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA---LSYL 409 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---HHHH
Confidence 356788888888654 33 3455678889999999999999999998753322 345677777766533211 1122
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 230 HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
-+.+.+. .|..+.+|.++.++|.-.++.+.|++.|++..+..| ...+|+.+..-+.....+|.|...|+..+.. .
T Consensus 410 aq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 410 AQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3333333 466899999999999999999999999999999877 6778888888899999999999999987753 2
Q ss_pred C-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHH
Q 012879 309 P-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRT 385 (454)
Q Consensus 309 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 385 (454)
| +-..|-.+...|.+.++++.|+-.|+.+.+ +.|. .+....+...+.+.|+.++|+++++++... +-|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 2 223455566789999999999999999984 4554 556677788889999999999999998776 335555555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.+..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|..-|.-+.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6777788899999999999999999999999999999999999999999888777665544
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=3.5e-13 Score=123.63 Aligned_cols=276 Identities=14% Similarity=0.115 Sum_probs=215.8
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHH--HHHHHHHh
Q 012879 44 AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT--ALVNMYVS 121 (454)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 121 (454)
.|++++|.+.+.... ..... | ...|.....+....|+++.|.+.+.++.+. .|+..... .....+..
T Consensus 97 eGd~~~A~k~l~~~~---~~~~~--p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNA---DHAEQ--P----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHH---hcccc--h----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 799999998888775 33222 2 223444455558999999999999999874 45554332 44678899
Q ss_pred CCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---c--------chHHHHHHHHHhcCCh
Q 012879 122 LGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPCRN---V--------VSWTGIIDGYTRMNRS 187 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~~~~ 187 (454)
.|+++.|...++++.+ | +......+...|.+.|++++|.+++..+.+.. . .+|..++.......+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999885 4 45678889999999999999999999887522 1 1333444444455666
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
+...++++...+ ..+.++.....+...+...|+.++|..++++..+. .+ ++... ++.+....++.+++.+..+
T Consensus 246 ~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~-~~~l~--~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 246 EGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY-DERLV--LLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-CHHHH--HHHhhccCCChHHHHHHHH
Confidence 777777777755 34567888999999999999999999999999884 22 54322 3334445699999999999
Q ss_pred HhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 268 DISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 268 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
+..+..| |...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9998877 5667888999999999999999999999985 68999999999999999999999999998764
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.8e-14 Score=127.04 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=162.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCC--CCCchhHHHHHHHHHhCC
Q 012879 46 SPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLG 123 (454)
Q Consensus 46 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 123 (454)
+..+|+..|.... ..... +......+.++|-..+++++|.++|+.+.+... .-+..+|.+.+..+-+.=
T Consensus 334 ~~~~A~~~~~klp---~h~~n------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLP---SHHYN------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHhhH---HhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 4456666666643 33333 445566666666677777777777776665321 123445555554332221
Q ss_pred ChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
...---+-+-.+....+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 1111111111222344566777777777777777777777666653 335666666666666667777777766654
Q ss_pred cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhH
Q 012879 201 EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSW 279 (454)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 279 (454)
..+-+-..|.-+.-.|.+.++++.|+-.|+++.+. .|.+......+...+.+.|+.++|+.+|+++....| |+..-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 11222233444555666777777777777766664 455666666666677777777777777777666544 55554
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
-..+..+...+++++|+..++++++. ++-+...|..+...|-+.|+.+.|..-|.-+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 45556666667777777777777664 222344555566667777777777766666653
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.4e-12 Score=120.29 Aligned_cols=282 Identities=11% Similarity=-0.062 Sum_probs=159.6
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCch-hHHHHHHHHHhCCChhHHHHHHhhCCC--CCch--hHHHHHHHHHhcCCHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVY-VNTALVNMYVSLGFLKDSSKLFDEMPE--RNLV--TWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~ll~~~~~~~~~~~A~ 160 (454)
..|+++.|.+.+....+.. |++. .+-....++...|+.+.|.+.+.+..+ |+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4555555555555544432 2222 223334445555666666666555432 2221 2222345555666666666
Q ss_pred HHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHH----hHHHHHHccCchhHHHHHHHhh
Q 012879 161 SLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITIL----AVLPAIWQNGDVKSCQLIHGYG 233 (454)
Q Consensus 161 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~ 233 (454)
..++.+.+ | ++..+..+...+...|++++|.+.+....+. +.. +...+. .........+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666553 2 3345556666666677777777777766665 322 222221 1111112222222222333333
Q ss_pred hhcCC--CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 234 EKRGF--TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSW---TSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 234 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
.+... .+.++..+..++..+...|+.++|.+++++..+..||.... ..........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 22210 12367777888888888888888888888888776654421 112222234567777888887776642 2
Q ss_pred CcH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 309 PNR--VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 309 p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
-|. ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233 44556777788888888888888853333 44678777888888888888888888888764
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.8e-13 Score=118.31 Aligned_cols=396 Identities=12% Similarity=0.063 Sum_probs=253.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhH-HHHHHHHhccCCcchHhHHHHHHHHcCCCCC----c
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTY-SFLIRTCATLSHPNLGTQLHAVISKVGFQSH----V 109 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 109 (454)
..|.+.|..+.-+.+|+..|+-+. +...- | +...+ -.+.+.+.+.+++.+|++.|+..+..-...+ +
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiiv---knkmf--~---nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIV---KNKMF--P---NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhh---ccccc--C---CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 344555666777788999888887 44433 5 44332 2345567788889999999988776422222 2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----------------CCc
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFARSLFEEMPC----------------RNV 171 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----------------~~~ 171 (454)
.+.+.+.-.+.+.|+++.|+..|+...+ |+..+--.++-++..-|+-++..+.|..|.. |+.
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 3455555678899999999999999875 7766655566666677888888888888752 111
Q ss_pred chHHHHH-----HHHHhc--CChHHHHHHHHHHHHccCCCCChhh-------------HH--------hHHHHHHccCch
Q 012879 172 VSWTGII-----DGYTRM--NRSNEALALFRKMVACEYTEPSEIT-------------IL--------AVLPAIWQNGDV 223 (454)
Q Consensus 172 ~~~~~l~-----~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~--------~l~~~~~~~~~~ 223 (454)
...+.-+ +-.-+. .+.++++-.-.++... .+.|+-.. +. .-...+.+.|++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 1122111 111111 1112222221222211 22222110 00 112235566666
Q ss_pred hHHHHHHHhhhhcCCCCc-----------------------------------hHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAF-----------------------------------DIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+.|.++++.+.+...... ++.....-.+.....|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 666666666555422211 122222222223345788888888888
Q ss_pred hhhcCCChhhHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 269 ISVERKNLVSWTS---IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 269 ~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
.... |...-.+ +.-.+-..|+.++|++.|-++..- +..+...+..+...|....++.+|++++.+... -++.
T Consensus 516 al~n--dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 516 ALNN--DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHcC--chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 8773 3332222 233456778999999988776542 233666777788888888899999999888764 4666
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
|+.+...|.+.|-+.|+-..|.+..-+-... +.+..+..=|..-|....-+++++.+|+++.-..|.....-..++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7888999999999999999998876554444 446777777777788888899999999999877776555555678888
Q ss_pred HhcCCcCcHHHHHHHHhhcc
Q 012879 425 AGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~ 444 (454)
.+.|+++.|.++++.+..+-
T Consensus 671 rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HhcccHHHHHHHHHHHHHhC
Confidence 99999999999999987653
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-12 Score=113.66 Aligned_cols=328 Identities=12% Similarity=0.078 Sum_probs=245.1
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-hHHHHHHHHHhc
Q 012879 106 QSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV-SWTGIIDGYTRM 184 (454)
Q Consensus 106 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~ 184 (454)
..|...+-.....+.+.|..+.|+..|......-+..|.+-+...--..+.+.+..+.......+.. .---+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444445667788888888888877655556665555555555555555544444432211 112244567777
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc---hHHHHHHHHHHHHhcCChhH
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF---DIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 261 (454)
.+.++++.-.+..... |++.+...-+....+.....|+++|+.+|+++.+. .|. |..+|..++-.-.....+.-
T Consensus 241 ~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 7889998888888876 77777777777777778889999999999999987 342 55677666543332222211
Q ss_pred -HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 262 -ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 262 -a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
|..+++ +. +--+.|..++..-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|++-++.+.+-
T Consensus 318 LA~~v~~-id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 318 LAQNVSN-ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHH-hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 222211 11 134567788888888899999999999999987533 4567777888999999999999999999863
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 341 CEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
-+.|-..|-.|.++|.-.+.+.-|+-+|++.... +.|...|..|.++|.+.++.++|+..|.+++..+..+...+..
T Consensus 394 --~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 394 --NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred --CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 3457788999999999999999999999999887 5578999999999999999999999999999988888889999
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhh
Q 012879 420 MYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
++.+|.+.++.++|...+++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988776
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.3e-12 Score=108.25 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=193.8
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc------hhHHHHHH
Q 012879 44 AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV------YVNTALVN 117 (454)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~ 117 (454)
++++++|+++|-+|. +..+. +..+--+|.+.|.+.|..++|++++..+.++ ||. .....|..
T Consensus 48 s~Q~dKAvdlF~e~l---~~d~~------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 48 SNQPDKAVDLFLEML---QEDPE------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGR 115 (389)
T ss_pred hcCcchHHHHHHHHH---hcCch------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHH
Confidence 467788888888887 55544 6667778888888888888888888887763 332 23344666
Q ss_pred HHHhCCChhHHHHHHhhCCC-C--CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------hHHHHHHHHHhcCC
Q 012879 118 MYVSLGFLKDSSKLFDEMPE-R--NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV--------SWTGIIDGYTRMNR 186 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~ 186 (454)
-|...|-+|.|+.+|..+.+ + -......++..|-...+|++|+++-+++..-+.. .|..+...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 67788888888888888876 3 2346677888888888888888887766543333 34444555556677
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
.+.|..++.+..+. .+.....-..+.+.....|++..|.+.++.+.+.+.. .-+.+...|..+|...|+.++....+
T Consensus 196 ~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~-yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 196 VDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE-YLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888763 2333444455666778888888888888888877422 24566777888888888888888888
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHHh
Q 012879 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 340 (454)
.++.+..+....-..+...-....-.+.|..++.+-... +|+...+..++..... .|...+-...++.|...
T Consensus 273 ~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 273 RRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 888777666666666666555555666666666655554 5788888878766543 23345555566666544
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.9e-11 Score=106.87 Aligned_cols=384 Identities=9% Similarity=-0.064 Sum_probs=258.4
Q ss_pred CCchhHHHHHHHHhhhhhhhh-hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 10 PNNITTQIHSHLLTTNSLLHH-SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
..+.+...|.+-.+.. || ++-|.....+|..-|+|++.++--.... +..+. -+..+..-.+++-..|
T Consensus 130 kY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkAL---El~P~------Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKAL---ELNPD------YVKALLRRASAHEQLG 197 (606)
T ss_pred cHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHh---hcCcH------HHHHHHHHHHHHHhhc
Confidence 3456667777776665 55 8899999999999999999998888777 55544 4456666677777888
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHH------------------
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMI------------------ 147 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll------------------ 147 (454)
++++|+.-.....-.+--.|..+--.+=+.+-+.| ...+.+-+.+=.. |+.....+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 88777654443322221112222111111111111 1223333331111 1111111111
Q ss_pred -----HHHH--hcC---CHHHHHHHHhhCC-------CCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 012879 148 -----TGLV--KWG---ELEFARSLFEEMP-------CRN---------VVSWTGIIDGYTRMNRSNEALALFRKMVACE 201 (454)
Q Consensus 148 -----~~~~--~~~---~~~~A~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (454)
.++. ..+ .+..|.+.+.+-. ..+ ..+.......+.-.|+...|..-|+..++.
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l- 355 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL- 355 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc-
Confidence 1110 011 2333333332211 111 112222223455678999999999999984
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHH
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWT 280 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 280 (454)
.+.+...|.-+...|....+.++....|+...+. .|.++.+|..-...+.-.+++++|..-|++.....| +...|-
T Consensus 356 -~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 356 -DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred -CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 2333334888888999999999999999999987 577888999999999999999999999999999766 566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC------CCChhHHHHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV------LPDIKHYGCLI 354 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~ 354 (454)
-+.-+..+.+++++++..|++.++. .+-.+..|+.....+...++++.|.+.|+..+..-.. .+.+.+-..++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 7777778899999999999999886 4556788999999999999999999999999864111 11222223333
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 355 DMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
-.-.+ +++..|.+++++..+..| ....|..|...-.+.|+.++|+++|++....-..
T Consensus 512 ~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 512 VLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 32233 899999999999998844 3568999999999999999999999998876544
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=3e-11 Score=103.32 Aligned_cols=280 Identities=13% Similarity=0.032 Sum_probs=197.9
Q ss_pred CCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--cchHHHHHHHHHhcCChHHHHHHH
Q 012879 122 LGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPCR--N--VVSWTGIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~~ 194 (454)
.|++..|++...+-.+. ....|..-..+.-+.|+.+.+-.++.+..++ | ...+-+..+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777777665431 2233444445566677777777777776653 2 234455556677777777777777
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch------HHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD------IRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
.+..+. .+-+.........+|.+.|++.....+...+.+.|..... ..+|..+++-....+..+.-...++.
T Consensus 177 ~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777763 3455666777777777777777777777777777655421 23566666666666666666667777
Q ss_pred hhhc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh
Q 012879 269 ISVE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI 347 (454)
Q Consensus 269 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 347 (454)
.... +.++..-..++.-+.+.|+.++|.++..+..+.+..|+ . ...-.+.+-++.+.-++..+.-.+..+.. +
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPED--P 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCCC--h
Confidence 7665 34566777788888889999999999888888766665 2 22234567788888888887777753444 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..+.+|...|.+.+.+.+|.+.|+...+..|+..+|..+..++.+.|+..+|.+..++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67788888899999999999999988777889999999999999999999999988888744
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-11 Score=109.79 Aligned_cols=396 Identities=11% Similarity=-0.024 Sum_probs=280.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHH----HHHcC--
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAV----ISKVG-- 104 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-- 104 (454)
+.----+.+++.-.|.+++|..+...-. -. - - |..+......++.+..++++|..++.. .....
T Consensus 49 p~d~~~~aq~l~~~~~y~ra~~lit~~~---le-~---~---d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy 118 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQYERAAHLITTYK---LE-K---R---DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYY 118 (611)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhh---hh-h---h---hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhc
Confidence 3333446666777777777777665543 11 1 2 677777888888888889998888872 11100
Q ss_pred -------CCCCchh-----------HHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHH---HHh-----------
Q 012879 105 -------FQSHVYV-----------NTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITG---LVK----------- 152 (454)
Q Consensus 105 -------~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~---~~~----------- 152 (454)
+.+|..- +-.-...|....+.++|...|.+....|+..|..+... ..-
T Consensus 119 ~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~ 198 (611)
T KOG1173|consen 119 EKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLES 198 (611)
T ss_pred chhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhc
Confidence 0111111 11111234455667788888877766665555443322 110
Q ss_pred -------cCCHHHHHHHHhhC----C----------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q 012879 153 -------WGELEFARSLFEEM----P----------------CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEP 205 (454)
Q Consensus 153 -------~~~~~~A~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (454)
.-+.+.-..+|+-. . +.+.........-+...+++.+..++.+...+ ..++
T Consensus 199 l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpf 276 (611)
T KOG1173|consen 199 LDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPF 276 (611)
T ss_pred ccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCC
Confidence 11122222223211 1 02334444555667788999999999999998 5677
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHH
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIIS 284 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~ 284 (454)
....+..-+.++...|+..+-..+-..+++. .|..+.+|-++.-.|.-.|+.++|.+.|.+.....|. ...|-....
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 7777777788999999999988888888887 6778899999999999999999999999999886553 457889999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
+|+-.|..++|+..+...-+.=.. ....+--+.--|.+.++.+.|.++|..... -.+.|+.+.+-+.-.....+.+.
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhH
Confidence 999999999999999887663111 111222334457788999999999999874 23445677777766677788999
Q ss_pred HHHHHHhcCCCC-------CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHH
Q 012879 365 QAEKTALGIPSE-------IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 365 ~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (454)
+|..+|+..... .+ -..+++.|..+|.+.+.+++|+..+++++...|.+..++.+++-+|...|+++.|.+.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 999998876632 11 2356888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 012879 437 RRVMDER 443 (454)
Q Consensus 437 ~~~~~~~ 443 (454)
|.+....
T Consensus 512 fhKaL~l 518 (611)
T KOG1173|consen 512 FHKALAL 518 (611)
T ss_pred HHHHHhc
Confidence 8876543
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=2.1e-12 Score=110.41 Aligned_cols=201 Identities=12% Similarity=0.071 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
....+..+...+...|++++|.+.+++.....| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788888888888888888888877655 45677777788888888888888888887754 2345566777778
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...|++++|.+.++..............+..+..++...|++++|.+.+++.....| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876422223345667778888889999999998888777633 456778888888899999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.+.++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998886666677777888888899999999888877553
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=6.3e-12 Score=120.46 Aligned_cols=266 Identities=13% Similarity=0.047 Sum_probs=194.1
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH---------ccCchhHHHHHHHhhhh
Q 012879 170 NVVSWTGIIDGYTR-----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIW---------QNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 170 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 235 (454)
+...|...+++... .+..++|...|++..+. .+-+...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555566665322 23467999999999874 3334555665555443 23458899999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
. .|.+...+..+..++...|++++|...|++..+..| +...+..+...+...|++++|+..+++..+.... +...+
T Consensus 333 l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 L--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred c--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7 577899999999999999999999999999999877 5667888899999999999999999999986433 22233
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFH 393 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 393 (454)
..++..+...|++++|...++++.+. .-+.++..+..+..++...|++++|...++++....|+. ...+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 33444566689999999999998764 222245557778888999999999999999987765554 4455566667777
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
| ++|...++++.+.....+.........+.-.|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4788888887765444333333366666667887777766 7777654
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=3.3e-11 Score=103.05 Aligned_cols=294 Identities=13% Similarity=0.128 Sum_probs=234.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (454)
.+-..+++.. .|+|.+|.++..+.. +.+.. ....|..-.++.-..|+.+.+-+++.+..+..-.++...
T Consensus 87 ~~~egl~~l~--eG~~~qAEkl~~rna---e~~e~------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v 155 (400)
T COG3071 87 ALNEGLLKLF--EGDFQQAEKLLRRNA---EHGEQ------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV 155 (400)
T ss_pred HHHHHHHHHh--cCcHHHHHHHHHHhh---hcCcc------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH
Confidence 3444444443 799999999999877 77766 355677777888899999999999999988644667777
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----C-------cchHHHH
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPCR----N-------VVSWTGI 177 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~-------~~~~~~l 177 (454)
+-+..+.....|+.+.|..-++++.+ ..+........+|.+.|++.....++..+.+. + ..+|+.+
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 88888889999999999998887764 56778999999999999999999999998862 1 2478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
++-....+..+.-...+++... ..+.++..-..++.-+.+.|+.+.|.++.++..+.+..+ . -...-...+-+
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~----L~~~~~~l~~~ 308 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-R----LCRLIPRLRPG 308 (400)
T ss_pred HHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-h----HHHHHhhcCCC
Confidence 8888888888887778888766 445667777788889999999999999999999987655 2 11222345566
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
+...-++..++-....| ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 77776666666655544 6678899999999999999999999987775 78999999999999999999999999998
Q ss_pred HHHhcCCCCC
Q 012879 337 MVEECEVLPD 346 (454)
Q Consensus 337 ~~~~~~~~~~ 346 (454)
.... -.+|+
T Consensus 387 ~L~~-~~~~~ 395 (400)
T COG3071 387 ALLL-TRQPN 395 (400)
T ss_pred HHHH-hcCCC
Confidence 8754 33443
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=1.1e-11 Score=115.80 Aligned_cols=275 Identities=12% Similarity=0.056 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHH
Q 012879 52 LLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 131 (454)
Q Consensus 52 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 131 (454)
.++-.+. ..|+. | +..||..+|..|+..|+.+.|- +|..|.....+-+...++.++......++.+.+.
T Consensus 11 nfla~~e---~~gi~--P---nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 11 NFLALHE---ISGIL--P---NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred hHHHHHH---HhcCC--C---chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--
Confidence 3455566 78888 8 9999999999999999999998 9999988888888889999999888888887765
Q ss_pred HhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHH
Q 012879 132 FDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITIL 211 (454)
Q Consensus 132 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (454)
+|...+|..+..+|...||+.. .+..++ -...+...+...|.-.....++..+.-.++..||..+
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 7888899999999999998765 222222 1223444555555555555555554333344454433
Q ss_pred hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh-cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcC
Q 012879 212 AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK-CGCIFSASKLFEDISVERKNLVSWTSIISGFAMHG 290 (454)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (454)
.+.-....|-++.+.+++..+....... +... +++-... ...+++-........+ .|++.+|.+++.+-..+|
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~--p~~v--fLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNA--PFQV--FLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAG 218 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccc--hHHH--HHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcC
Confidence 2222333445555555554443322111 1111 1211111 2223333333333333 477777777777777777
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
+.+.|..++.+|.+.|++.+.+-|..++-+ .++...++.+...|... |+.|+..|+.-.+..+...|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 777777777777777777777777666644 56666677777777666 777777777766666655443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.5e-12 Score=107.98 Aligned_cols=231 Identities=13% Similarity=0.091 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
+.+.++|.+.|.+.+|...++...+. .|-+.||..|.+.|.+..++..|..++.+..+. .|.+..........+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 45667777777777777777766654 566667777777777777777777777776665 4555555566666666
Q ss_pred hcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHH
Q 012879 255 KCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 333 (454)
..++.++|.++|+...+..| ++.....+...|.-.|+++-|+.+++++.+.|+. ++..|+.+.-+|.-.++++-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 67777777777777666644 5556666666666677777777777777776655 556666666666666777777766
Q ss_pred HHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 334 FDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 334 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
|++.... --.|+ ..+|-.+....+..|++..|.+.|+-.... ......++.|...-.+.|+++.|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 6666543 22232 234444555555556666666666655544 2234555656555556666666666666665555
Q ss_pred cC
Q 012879 411 RG 412 (454)
Q Consensus 411 ~~ 412 (454)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 54
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=2e-10 Score=106.16 Aligned_cols=399 Identities=11% Similarity=-0.012 Sum_probs=263.9
Q ss_pred hhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCC
Q 012879 27 LLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQ 106 (454)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 106 (454)
+.-|...|..+.-++...|+++.+.+.|++.. ..... ..+.|+.+...+...|.-..|..+++........
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~---~~~~~------~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL---PFSFG------EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Hhhhh------hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 35788999999999999999999999999987 44444 6688999999999999999999999877654423
Q ss_pred C-CchhHHHHHHHHH-hCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHh-----------cCCHHHHHHHHhh
Q 012879 107 S-HVYVNTALVNMYV-SLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVK-----------WGELEFARSLFEE 165 (454)
Q Consensus 107 ~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~-----------~~~~~~A~~~~~~ 165 (454)
| |+..+-..-..|. +.+..++++.+-.++.. .....|..+.-+|.. .....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3344433333343 44666666666555432 233344444444432 1224456666666
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch
Q 012879 166 MPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD 242 (454)
Q Consensus 166 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (454)
..+ .|+...-.+.--|+..++.+.|.+..++..+. +...+...|..+.-.+...+++..|+.+.+..... .+.+
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N 546 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDN 546 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhh
Confidence 543 34444444555677778888898888888886 55677788888888888888888888888776654 2212
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhc----------------------------CC-C-hhhHHHHHHHHHhcC--
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVE----------------------------RK-N-LVSWTSIISGFAMHG-- 290 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------------------~~-~-~~~~~~l~~~~~~~g-- 290 (454)
......-++.-...++.+++......+... .| + +.++..+..-....+
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 222222222223344555444443333221 01 1 111111111111000
Q ss_pred -ChhHHHHHHHHHHhCCCC--CcH------HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 291 -MGKEAVENFGRMQKVGLK--PNR------VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 291 -~~~~A~~~~~~m~~~~~~--p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
..+.. |....+. |+. ..|......+.+.+..++|...+.+..+ ..+.....|......+...|
T Consensus 627 ~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 627 AGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred cccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHH
Confidence 00000 1111111 221 2344555677888999999988888875 33445667777778888999
Q ss_pred ChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHH--HHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 362 RLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGER--VTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
..++|.+.|.......| ++.+...+...+.+.|+..-|.. ++.++++.+|.++..|..++..+.+.|+.++|.+.|.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999999999888855 46788999999999999888888 9999999999999999999999999999999999999
Q ss_pred HHhhccc
Q 012879 439 VMDERNA 445 (454)
Q Consensus 439 ~~~~~~~ 445 (454)
...+...
T Consensus 779 aa~qLe~ 785 (799)
T KOG4162|consen 779 AALQLEE 785 (799)
T ss_pred HHHhhcc
Confidence 8877654
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=4.8e-12 Score=105.07 Aligned_cols=227 Identities=11% Similarity=-0.016 Sum_probs=198.4
Q ss_pred HhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hHHHHHHHHHhc
Q 012879 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SWTSIISGFAMH 289 (454)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 289 (454)
..+.++|.+.|.+..|++.++...++ .| .+.+|..|-..|.+..+...|+.+|.+-.+..|-.+ ...-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 46788999999999999999998886 34 778899999999999999999999999999878444 455677888889
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012879 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
++.++|.++++...+.. +.+.....++...|.-.++++.|..+|+++.+. |+. ++..|..+.-+|.-.++++-++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999988863 346667777788888999999999999999998 764 678899999999999999999999
Q ss_pred HhcCCCC--CCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 370 ALGIPSE--ITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 370 ~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
|++.... .|+ ..+|..+.......||+..|.+.|+-++..++++...++.++..-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9887765 344 4678889999999999999999999999999999999999999999999999999999876553
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=9.4e-10 Score=99.86 Aligned_cols=393 Identities=12% Similarity=0.056 Sum_probs=217.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
.|..++..| ..+.+.+.+++.+.+. ..-+. ...|.....-.+...|+.++|......-.... ..+...|
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL---~k~~e------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCw 78 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQIL---KKFPE------HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCW 78 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHH---HhCCc------cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhH
Confidence 344444433 3455566666666655 32222 33444444444555566666666555444432 2344556
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCC
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 186 (454)
+.+.-.+-...++++|++.|..... .|...|.-+.-.-++.|+++.....-....+ | ....|..++.++.-.|+
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6555555555666666666665542 2334454444444555555555555444443 1 22345555555666666
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHH------HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChh
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLP------AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
...|..++++..+.....|+...+..... ...+.|..+.|.+.+...... .......-..-...+.+.++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHH
Confidence 66666666666554222344444332222 224445555555555544443 1112222334455556666666
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHH-HHHhcCC-----------------------------------hhHHHHHHHHHHh
Q 012879 261 SASKLFEDISVERKNLVSWTSIIS-GFAMHGM-----------------------------------GKEAVENFGRMQK 304 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~-----------------------------------~~~A~~~~~~m~~ 304 (454)
+|..++..+....||...|..... ++.+-.+ .+..-+++..+.+
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 666666666665555444433322 2211111 1222333444445
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc-----C------------CCCChhHH--HHHHHHHHhcCChHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC-----E------------VLPDIKHY--GCLIDMLGRAGRLEQ 365 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~------------~~~~~~~~--~~l~~~~~~~g~~~~ 365 (454)
.|+++- +..+...|- ++...- +.++....+ | -+|+...| -.++..|-+.|+++.
T Consensus 317 Kg~p~v---f~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred cCCCch---hhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 554432 233333332 111111 333222210 1 14554444 456788889999999
Q ss_pred HHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 366 AEKTALGIPSEITDV-VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 366 A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
|..+++...+..|+. ..|..-.+.+...|++++|..+++++.+.+..|...-..-+.-..++.+.++|.+++..+.+.|
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999999986764 4566667888899999999999999999888777555577888899999999999999998877
Q ss_pred c
Q 012879 445 A 445 (454)
Q Consensus 445 ~ 445 (454)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 5
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=3.5e-11 Score=102.80 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++.|.+.+++..+. .|.+...+..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 34445555555555555555555555542 2223344444444445555555555555544443 2223344444444
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 330 (454)
.+...|+ +++|.+.+++..+....| ....+..+..++...|++++|
T Consensus 108 ~~~~~g~---------------------------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 108 FLCQQGK---------------------------------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHccc---------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 4444444 444444444444321111 122333344444555555555
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
...++...+. .+.+...+..+...+...|++++|.+.+++.... ..+...+..+...+...|+.++|..+.+.+.+
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555442 1122334444555555555555555555544333 22333444444555555555555555554443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=3.4e-10 Score=106.08 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHH
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE----ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLM 420 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 420 (454)
..|..|++-+......+.|..+.++.... ..|..-+..+.+.+.+.+....+..++.++.+.-... ......+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 56788888888999999999988887765 3455667788888999999999999999988733221 2234556
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 421 YNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.......|+.+...++.+-+...|+.-
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 677778899988888888888877654
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=2.5e-11 Score=116.40 Aligned_cols=261 Identities=11% Similarity=-0.024 Sum_probs=186.8
Q ss_pred CchhHHHHHHHHHh-----cCCHHHHHHHHhhCCC--CC-cchHHHHHHHHH---------hcCChHHHHHHHHHHHHcc
Q 012879 139 NLVTWNVMITGLVK-----WGELEFARSLFEEMPC--RN-VVSWTGIIDGYT---------RMNRSNEALALFRKMVACE 201 (454)
Q Consensus 139 ~~~~~~~ll~~~~~-----~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~ 201 (454)
+...|...+.+... .+++++|..+|++..+ |+ ...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l- 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL- 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-
Confidence 34455566655322 2346789999998876 32 345555555443 234588999999999884
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHH
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWT 280 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 280 (454)
.+.+...+..+...+...|++++|...++++.+. .|.++..+..+..++...|++++|...+++..+..|+. ..+.
T Consensus 334 -dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 334 -DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 4556778888888899999999999999999997 57688899999999999999999999999999987753 3344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGR 359 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 359 (454)
.++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhc
Confidence 455567778999999999999877532224445666778888999999999999987653 344 3444556667777
Q ss_pred cCChHHHHHHHhcCCCC---CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 360 AGRLEQAEKTALGIPSE---ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 360 ~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
.| ++|...++.+.+. .+....+ +-..+.-.|+.+.+... +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777766665554 2322223 33445556777777666 77766543
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.3e-10 Score=99.86 Aligned_cols=281 Identities=12% Similarity=-0.029 Sum_probs=220.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (454)
+......-..-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++++ ..|....+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHH
Confidence 3344444555677889999999999988763 445666677789999999998888888888 56677889999999
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 294 (454)
.|...|+..+|.++|.+.... .|.-...|-.+.+.|.-.|..+.|...|....+.-| ....+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 998899999999999998875 454667899999999999999999999988877633 33334445556788899999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc-CC---CC-ChhHHHHHHHHHHhcCChHHHHHH
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC-EV---LP-DIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
|.++|.+.... .+.|+..++-+.-.....+.+.+|..+|+.....- .. .+ -..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999987764 23466677777666667889999999999887320 01 11 234678889999999999999999
Q ss_pred HhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 370 ALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 370 ~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+++.... +.+..++..+.-.|...|+++.|++.|.+++...|.+..+-..|..+.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9988776 558899999999999999999999999999999998865555555444
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=2.5e-10 Score=100.29 Aligned_cols=234 Identities=8% Similarity=-0.096 Sum_probs=160.2
Q ss_pred cCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 184 MNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
.++.+.++.-+.++.......|+ ...|..+...+...|+.+.|...|++..+. .|.++..|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 34667777777777753222222 345777777888889999999888888886 56688899999999999999999
Q ss_pred HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 262 ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 262 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
|...|++..+..| +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...++....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 9999999988767 46678888888888999999999999988753 3332222222234456789999999977654
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHH--HHHHHhcCCCCC-----CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 341 CEVLPDIKHYGCLIDMLGRAGRLEQ--AEKTALGIPSEI-----TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
...|+... ..+.. ...|+..+ +.+.+.+..... .....|..+...+.+.|++++|+..|+++++.+|.+
T Consensus 194 -~~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33333322 22332 33455433 333333322321 134578899999999999999999999999988753
Q ss_pred -CCcHHHHHHHHHh
Q 012879 414 -GGDYVLMYNILAG 426 (454)
Q Consensus 414 -~~~~~~l~~~~~~ 426 (454)
......++.....
T Consensus 270 ~~e~~~~~~e~~~~ 283 (296)
T PRK11189 270 FVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 3333344444433
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.8e-09 Score=91.70 Aligned_cols=277 Identities=10% Similarity=-0.026 Sum_probs=202.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHH---HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHH
Q 012879 138 RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTG---IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVL 214 (454)
Q Consensus 138 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 214 (454)
.|+.....+...+...|+.++|+..|++...-|+.+... ..-.+...|+.+....+...+.. ...-....|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~--~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA--KVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh--hhhcchhhhhhhh
Confidence 345566777788888888888888888776544433322 23345567788877777777765 2334445555556
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 293 (454)
.......++..|..+-++.++. .|.+...+-.-...+...|+.++|.=.|+......| +...|..|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 6667778888888888888776 455666776677788888999999999988888766 7889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHH-HHHh-cCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVL-NACS-HGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
+|.-+-+...+. .+.+..+.+.+. ..|. ...--++|.++++...+ +.|+ ....+.+...+...|+.++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 988877765543 233555555442 2222 23345788888887764 4565 445567778888899999999999
Q ss_pred hcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 371 LGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 371 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
++.....||....+.|.+.+...+.+.+|++.|..++..+|.+..+...+-.
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 9988888999999999999999999999999999999998887766554433
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=7.4e-11 Score=108.04 Aligned_cols=234 Identities=16% Similarity=0.118 Sum_probs=138.4
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhc-----CCCCchHH-HHHHHHHHHHhcCChhHHHHHHHHhhhc-----C---
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKR-----GFTAFDIR-VLNCLIDTYAKCGCIFSASKLFEDISVE-----R--- 273 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--- 273 (454)
.+...+...|...|+++.|..+++...+. |...+... ..+.+...|...+++.+|..+|+++... +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44445555666666666666666555543 21122222 2334666777777777777777766554 1
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC-CCcH-HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC--C
Q 012879 274 K-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGL-KPNR-VTFLSVLNACSHGGLVEEGLNFFDKMVEECE--V 343 (454)
Q Consensus 274 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 343 (454)
| -..+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|+..+++++|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 123556666667777777777666665432 111 1222 2345555666777777777777776555421 1
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHh-
Q 012879 344 LPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEM- 409 (454)
Q Consensus 344 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 409 (454)
.++ ..+++.|...|...|++++|.++++++... .+ ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 121 356677777777777777777777766544 11 1345666777777777777777777766543
Q ss_pred ---hcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 410 ---ERGYG---GDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 410 ---~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
||.++ .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33332 245667777777777777777776665
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=8.8e-10 Score=98.99 Aligned_cols=126 Identities=10% Similarity=-0.046 Sum_probs=90.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCC-CCCchhHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF-QSHVYVNTAL 115 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 115 (454)
=++.+.+.|++++|....+++. ..++. +...+..=+-++.+.+++++|..+.+. .+. ..+...+---
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil---~~~pd------d~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEK 85 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKIL---SIVPD------DEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEK 85 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHH---hcCCC------cHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHH
Confidence 3456778899999999999998 66655 777888888888999999999855432 221 1111111122
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchH
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSW 174 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 174 (454)
+-++.+.+..|+|+..++...+.+..+...-...+.+.|++++|.++|+.+.+.+...+
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 33445889999999999966666666777777888999999999999999865433333
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=2.1e-09 Score=99.89 Aligned_cols=291 Identities=10% Similarity=0.003 Sum_probs=185.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHH
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVN 117 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 117 (454)
...+...|++++|++.++.-. ..-+. ....+......+.+.|+.++|..++..+++.+ |.|..-|..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~---~~I~D------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE---KQILD------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh---hhCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHH
Confidence 445678899999999998875 33322 45667788889999999999999999999987 455556666666
Q ss_pred HHHhC-----CChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHH-HHHHHHhhCCCCCc-chHHHHHHHHHhcCChH
Q 012879 118 MYVSL-----GFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELE-FARSLFEEMPCRNV-VSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 118 ~~~~~-----g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 188 (454)
+..-. .+.+....+++++.+ |...+...+.-.+.....+. .+..++..+....+ .+|+.+-..|.......
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 66333 256777777877754 32222222211122212222 23333344444433 45555555555444444
Q ss_pred HHHHHHHHHHHcc-------------CCCCCh--hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 189 EALALFRKMVACE-------------YTEPSE--ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 189 ~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
-..+++....... .-+|+. .++..+...|...|++++|.++.+..++. .|..+..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 4555555544320 113333 34556667777888888888888888876 565677888888888
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH--------HHHHHHHHHhcC
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV--------TFLSVLNACSHG 324 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~l~~~~~~~ 324 (454)
-..|++.+|.+.++......+ |-..-+-.+..+.++|++++|.+++......+..|-.. -......+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877644 44455556677788888888888887776655433221 113344667778
Q ss_pred CChHHHHHHHHHHHHh
Q 012879 325 GLVEEGLNFFDKMVEE 340 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~ 340 (454)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8887777766665543
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=8e-10 Score=93.13 Aligned_cols=185 Identities=8% Similarity=0.040 Sum_probs=108.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHH
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVN 117 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 117 (454)
++-+..+.++..|+.+++.-. ..+.. - ...+-..+..++-+.|++++|...+..+.+.. .++...+..|..
T Consensus 29 Ledfls~rDytGAislLefk~---~~~~E--E---E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAc 99 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL---NLDRE--E---EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLAC 99 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh---ccchh--h---hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHH
Confidence 667778899999999999876 44433 1 22333345566779999999999999988865 677788888888
Q ss_pred HHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
++.-.|.+.+|..+-....+ ++..-..++....+.++-++-..+.+.+.... .--.++.+.....-.+++|+++|.+.
T Consensus 100 c~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999998877643 22223334444445555444444444433211 11222333333333455555555555
Q ss_pred HHccCCCCChhhHHhHHH-HHHccCchhHHHHHHHhhhhc
Q 012879 198 VACEYTEPSEITILAVLP-AIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 236 (454)
... .|.-...+.-+. +|.+..-++.+.++++...+.
T Consensus 178 L~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred Hhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 432 233333333222 334444445555555444443
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=1.2e-10 Score=106.65 Aligned_cols=238 Identities=14% Similarity=0.086 Sum_probs=185.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHc-----cCCCCChhhHH-hHHHHHHccCchhHHHHHHHhhhhc-----CC-C
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVAC-----EYTEPSEITIL-AVLPAIWQNGDVKSCQLIHGYGEKR-----GF-T 239 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 239 (454)
.+...+...|...|++++|..++++..+. |...|...+.. .+...|...+++++|..+|+++... |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666899999999999999999998763 11345554444 4777889999999999999998763 21 2
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--------CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC---CC
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--------RKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKV---GL 307 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~ 307 (454)
|.-..+++.|..+|.+.|++++|...+++..+. .|.+. .++.++..+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 223457788889999999999999999887665 12332 4667778899999999999999986542 12
Q ss_pred CCc----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhc----C-CCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-
Q 012879 308 KPN----RVTFLSVLNACSHGGLVEEGLNFFDKMVEEC----E-VLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE- 376 (454)
Q Consensus 308 ~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 376 (454)
.++ ..+++.+...|...|++++|.++++.+.... + ..+ ....++.|...|.+.+++.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 333 3578999999999999999999999988752 1 112 2456788899999999999999998876544
Q ss_pred ------CCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 377 ------ITD-VVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 377 ------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.|+ ..+|..|...|...|++++|+++.+.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344 368999999999999999999999998754
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=9.5e-09 Score=93.38 Aligned_cols=248 Identities=13% Similarity=0.215 Sum_probs=141.3
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHH----hcCCCCCCCCCCChhhHHHHHH
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQI----YTHSHSPLPPLFDSFTYSFLIR 82 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~l~~ 82 (454)
+.+-|+.+.++++.-++-.| ..-+-.|..+++.+++++|-+.+..+... ...|.+ +...|+-+..
T Consensus 150 ~~~lPets~rvyrRYLk~~P-----~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS------n~qlw~elcd 218 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAP-----EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS------NHQLWLELCD 218 (835)
T ss_pred hCCChHHHHHHHHHHHhcCH-----HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc------hhhHHHHHHH
Confidence 34555677777777766665 44667788899999999999999887631 122322 5566777777
Q ss_pred HHhccCCcchHhHHHHHHHHcCC--CCCc--hhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhc---
Q 012879 83 TCATLSHPNLGTQLHAVISKVGF--QSHV--YVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKW--- 153 (454)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~--- 153 (454)
..+++.+.-....+=.-+ +.|+ -+|. ..|++|.+.|.+.|.+++|..+|++... .++..|..+.++|+.-
T Consensus 219 lis~~p~~~~slnvdaii-R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAII-RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHHhCcchhcccCHHHHH-HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence 766665444433332222 2232 2443 4789999999999999999999988764 2333444444444311
Q ss_pred -------------C------CHHHHHHHHhhCCCC---------------CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 154 -------------G------ELEFARSLFEEMPCR---------------NVVSWTGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 154 -------------~------~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
| +++-...-|+.+... ++..|..- .-+..|+..+-...|.+..+
T Consensus 298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHH
Confidence 1 122333333333211 11222221 12224555666666666655
Q ss_pred ccCCCCC------hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 200 CEYTEPS------EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD--IRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 200 ~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
.+.|. ...|..+.+.|-..|+++.|..+|++..+......+ ..+|..-...-.+..+++.|+++.++..
T Consensus 376 --~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 376 --TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred --ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 22222 134556666666666666666666666665432211 3455555566666666666666665543
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.8e-12 Score=79.94 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=1.2e-08 Score=92.81 Aligned_cols=363 Identities=13% Similarity=0.063 Sum_probs=247.5
Q ss_pred hhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHH
Q 012879 75 FTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLV 151 (454)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~ 151 (454)
..|..++.+| ..+++...++..+.+.+ +.+-...+.....-.+...|+.++|....+.-.. .+.++|..+.-.+-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 3445555544 55677788888888777 3344555655555566778999999999888776 35578888888888
Q ss_pred hcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHH
Q 012879 152 KWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQL 228 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (454)
...++++|++.|..... .|...+.-+.-.-...++++.......+..+ -.+.....|..+..+..-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999987653 4566777777777888999999988888887 344556778888899999999999999
Q ss_pred HHHhhhhcCCCCchHHHHHHH------HHHHHhcCChhHHHHHHHHhhhcCCChhhH-HHHHHHHHhcCChhHHHHHHHH
Q 012879 229 IHGYGEKRGFTAFDIRVLNCL------IDTYAKCGCIFSASKLFEDISVERKNLVSW-TSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+.+...+....+++...+.-. .....+.|.++.|.+.+......-.|-..+ .+-...+.+.+++++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 999998876444466555432 234567888899988887766543344433 3455678899999999999999
Q ss_pred HHhCCCCCcHHHHHHHH-HHHhcCCChHHHH-HHHHHHHHhc---------------------------------CCCCC
Q 012879 302 MQKVGLKPNRVTFLSVL-NACSHGGLVEEGL-NFFDKMVEEC---------------------------------EVLPD 346 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~---------------------------------~~~~~ 346 (454)
++.. .||..-|...+ .++.+-.+.-++. .+|....+.+ |+++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~- 321 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS- 321 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc-
Confidence 9987 46666555444 3443222222222 3343333220 3322
Q ss_pred hhHHHHHHHHHHhcCChH----HHHHHHhcCCCC------------CCcHhH--HHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLE----QAEKTALGIPSE------------ITDVVV--WRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~------------~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
++..+...|-.-...+ -+..+...+... .|.... +..++..+-..|+++.|...++.++.
T Consensus 322 --vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 322 --VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred --hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2222222222111111 111222222111 344444 45577888899999999999999998
Q ss_pred hhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 409 MERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.-|.-+..|..-++++.+.|..++|...+++.++.+..
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 88877778888889999999999999999998876543
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=1.3e-09 Score=101.14 Aligned_cols=261 Identities=11% Similarity=0.010 Sum_probs=176.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc-
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC- 256 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 256 (454)
...+...|++++|++.++.-.+ .+......+......+.+.|+.++|..++..+.+. .|.+...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc
Confidence 3455666777777777766544 23333444555566667777777777777777776 354556666666665322
Q ss_pred ----CChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHH
Q 012879 257 ----GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG-KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 257 ----g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 331 (454)
.+.+...++|+++....|.......+.-.+.....+ ..+..++..+...|+++ +|+.+-..|....+.+-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 246667777777776655444443333333322233 24555666777788664 4555555666555555555
Q ss_pred HHHHHHHHhc-------------CCCCChh--HHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 332 NFFDKMVEEC-------------EVLPDIK--HYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 332 ~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
+++....... .-+|+.. ++.-+...|-..|++++|++++++.++..|+ +..|..-.+.+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 6666554331 1123432 3455677888999999999999998888665 5678888888999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
+++|.+.++.+.++++.|...-...+..+.++|++++|.+++..+...+.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999998888888889999999999999999999877765
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=7.8e-09 Score=85.28 Aligned_cols=390 Identities=13% Similarity=0.052 Sum_probs=255.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
-+++.+..+.+..+++.|++++..-. +..++ +....+.|..+|-...++..|-..++++... .|...-|
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~---Er~p~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSEL---ERSPR------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHH---hcCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 35677777889999999999998887 66666 7888999999999999999999999998764 3444433
Q ss_pred HH-HHHHHHhCCChhHHHHHHhhCCCC-CchhHHHHHH--HHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCCh
Q 012879 113 TA-LVNMYVSLGFLKDSSKLFDEMPER-NLVTWNVMIT--GLVKWGELEFARSLFEEMPC-RNVVSWTGIIDGYTRMNRS 187 (454)
Q Consensus 113 ~~-l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 187 (454)
.. -...+-+.+.+.+|+++...|... +...-..-+. ..-..+++..+..++++... .+..+.+.......+.|++
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 32 234556788999999999988763 2222222222 23467899999999999984 6667777777778899999
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC------------ch------H------
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA------------FD------I------ 243 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~------~------ 243 (454)
+.|.+-|....+-+|..|- ..|+..+ +..+.|+.+.|.+...+++++|+.. +| +
T Consensus 161 EaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999999998777664 4555544 4457789999999999999887432 01 1
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 244 ---RVLNCLIDTYAKCGCIFSASKLFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 244 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
..+|.-...+.+.|+++.|.+.+-+|... ..|++|...+.-.= ..+++.+..+-+.-+.+.++ ....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 12233334456789999999999998765 34777776654322 23456666666666666644 346789889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHh-cCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEV-LPDIKHYGCLIDMLGR-AGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 394 (454)
+-.||+..-++.|-.++.+-... .+ -.+...|+ |++++.. .-.+++|.+-++.+... ........+-++--...+
T Consensus 317 LllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~ 394 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNR 394 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998888888776653322 11 11233333 3444443 34667776655554332 000111111111111111
Q ss_pred C---hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 395 N---VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 395 ~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+ ...|++-+++.+++ ..++....++.+.+..++..+.++|+.=.+
T Consensus 395 dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred cHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1 12233333333332 234555667778888999999998876554
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=7.8e-10 Score=87.86 Aligned_cols=196 Identities=14% Similarity=0.017 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
+...|.-.|...|++..|..-+++..+..| +..+|..+...|.+.|+.+.|.+-|++..+... -+..+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 344455556666666666666666666555 334555566666666666666666666555421 133444555555556
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
.|++++|...|++....+....-..+|..+.-+..+.|+.+.|.+.|++.....| .+.+.-.+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666666665533333344555565556666666666666666555522 334555555566666666666666
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+++....++.........+++-.+.|+.+.+.+.-.++.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666655555444444445555555666655555544443
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=6.8e-10 Score=97.59 Aligned_cols=217 Identities=12% Similarity=0.007 Sum_probs=159.2
Q ss_pred CchhHHHHHHHhhhhcCC-CC-chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHH
Q 012879 221 GDVKSCQLIHGYGEKRGF-TA-FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVE 297 (454)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 297 (454)
+..+.+..-+.++....- .| .....|..+...|...|+.++|...|++..+..| +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456667777777765321 22 1356788889999999999999999999998877 67899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-
Q 012879 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE- 376 (454)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 376 (454)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+++....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999886322 4567778888888999999999999999875 344322222223345678899999999765443
Q ss_pred CCcHhHHHHHHHHHHcCCChhHHHHHHHHHH-------HhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 377 ITDVVVWRTLLGACSFHGNVEMGERVTRKIL-------EMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 377 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.|+...+ .......|+...+ +.+..+. +..|.....|..++..+.+.|++++|...|++....++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2332222 2233345665544 3444444 44555667899999999999999999999999988765
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=7.4e-08 Score=81.57 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=142.8
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHH-HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNT-LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
|..-+..+.++-...+. ......+. +...+..-|++++|+.+|..+. .... | +...+..|.-+.--.|
T Consensus 37 DytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~---~~~~---~---~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLM---NKDD---A---PAELGVNLACCKFYLG 105 (557)
T ss_pred cchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHh---ccCC---C---CcccchhHHHHHHHHH
Confidence 34444455544443333 12222222 3346678899999999999997 4332 3 5566666666666778
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
.+.+|..+-... +.++..-..++....+.|+-++-..+-+.+.. ....--++.+..--.-.+++|++++.++..
T Consensus 106 ~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888775433 33444445566666678887776666555543 223334455555555678999999999886
Q ss_pred --CCcchHHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhh------------
Q 012879 169 --RNVVSWTG-IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYG------------ 233 (454)
Q Consensus 169 --~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------ 233 (454)
|+-...|. +.-+|.+..-++-+.+++.-..+ .++.++...+..+....+.=.-..|+.-.+.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 34344444 44577888888888888888877 34444444444443333321111111111111
Q ss_pred --hhcC------------CCCc----hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 234 --EKRG------------FTAF----DIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 234 --~~~~------------~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+.+ +.|+ -+.....|+-.|.+.+++++|..+.+++...
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 1111 0110 1234455666788999999999998887653
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.4e-12 Score=76.72 Aligned_cols=50 Identities=30% Similarity=0.485 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
||+.+||.+|++|++.|++++|.++|++|. +.|+. | |..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~--P---~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK---KRGIK--P---DSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999 9 99999999999874
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=2.9e-09 Score=84.63 Aligned_cols=191 Identities=11% Similarity=0.007 Sum_probs=108.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 146 MITGLVKWGELEFARSLFEEMPCRN---VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 146 ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
+.-+|...|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+.|++..+ -.+-+..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence 3444555555555555555554322 23455555556666666666666666555 223344555555555566666
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+++|...|++.......+....++..+.-+..+.|+.+.|...|++..+..| ...+.-.+.....+.|++-.|...++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 6666666666555544444455666666666666666666666666666544 334555566666666666666666666
Q ss_pred HHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
....+. ++..+....|+.--..|+.+.+.++=..+.+
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 655543 5555555555555566666666555555554
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-08 Score=88.18 Aligned_cols=260 Identities=11% Similarity=0.003 Sum_probs=165.5
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITG 149 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~ 149 (454)
++.....+..++...|+.++|...|++....+ +-++.......-.+.+.|+.+....+...+... ...-|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 66777777777778888888888777766543 223333333444455667777766666555432 23334444444
Q ss_pred HHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 150 LVKWGELEFARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
.-..++++.|+.+-++..+. ++..|-.-...+...+++++|.-.|+..+. --|-+...|..++.+|...|++.+|
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHH
Confidence 55667777777777766543 334444444566777777777777777765 2345567777788888777777777
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHH-HH-HHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLI-DT-YAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 303 (454)
...-+...+. .+.+..+.+.+. .. +....--++|.+++++.....|+ ...-+.+...+...|..+.++.++++..
T Consensus 388 ~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 388 NALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 7666666554 343555555442 22 22233456777777777766664 3455666677777777777777777766
Q ss_pred hCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.. .||....+.|.+.+...+.+++|.+.|.....
T Consensus 466 ~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 466 II--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 53 56777777777777777777777777777764
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=6.8e-09 Score=87.28 Aligned_cols=301 Identities=14% Similarity=0.065 Sum_probs=211.1
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHH---HHHHhcCCHHHHHHHHhhCCCCCcchHHH---HHHHH
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMI---TGLVKWGELEFARSLFEEMPCRNVVSWTG---IIDGY 181 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~ 181 (454)
++.-..-+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.+..+-.+..+.+ -...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3344445666777778888888888888877776666554 45777777777777777766533322322 23467
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChh----------------hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEI----------------TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
.++|+++.|..-|+..+++ .|+.. .....+..+...||...|++....+.+. .|.+...
T Consensus 117 lK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l 191 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASL 191 (504)
T ss_pred hhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHH
Confidence 7888888888888888765 22211 1334455666778889999999988886 5678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH----HHH---H
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT----FLS---V 317 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~---l 317 (454)
+..-..+|...|.+..|+.-++...+.. .++..+--+-..+...|+.+.++...++-++. .||... |.. +
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 8888999999999999988777776653 46667777778888889988888888887764 455432 111 1
Q ss_pred H------HHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHH
Q 012879 318 L------NACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRT 385 (454)
Q Consensus 318 ~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 385 (454)
. ......+++.++.+-.+...+. .|. ...+..+-.++...|++.+|++...++.+..|+ +.++..
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 1 1223556777777777776654 333 223455667777888999999988888887454 778888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
-..+|.-...++.|+.-|+++.+.++.+..+-.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 888998888999999999999988887765433
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.5e-08 Score=86.03 Aligned_cols=369 Identities=12% Similarity=0.059 Sum_probs=215.5
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC-chhHHHHHH
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH-VYVNTALVN 117 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 117 (454)
.+.+..|+++.|+.+|.+.. ...+. +...|+.-..+++..|++++|.+--.+.++.. |+ +.-|.-...
T Consensus 10 naa~s~~d~~~ai~~~t~ai---~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAI---MLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGA 78 (539)
T ss_pred HhhcccccHHHHHHHHHHHH---ccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHH
Confidence 46678999999999999988 54443 88889999999999999999988777776654 44 457888888
Q ss_pred HHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHh------hCCC-C------CcchHHHHHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFE------EMPC-R------NVVSWTGIIDGY 181 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~------~~~~-~------~~~~~~~l~~~~ 181 (454)
++.-.|++++|+..|.+-.+ | +...++.+..++... . .+.+.|. .+.. | ....|..++..+
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 99999999999999998775 2 233444444444110 0 0011110 0000 0 001122221111
Q ss_pred Hhc----------CChHHHHHHHHHH-----HHc------cCCCC----------------------ChhhHHhHHHHHH
Q 012879 182 TRM----------NRSNEALALFRKM-----VAC------EYTEP----------------------SEITILAVLPAIW 218 (454)
Q Consensus 182 ~~~----------~~~~~a~~~~~~~-----~~~------~~~~~----------------------~~~~~~~l~~~~~ 218 (454)
-+. .+...|...+... ... .+..| -..-...+.++..
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 100 0011111111000 000 00001 0112556666666
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hHHH-------HHHHHHhcC
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SWTS-------IISGFAMHG 290 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-------l~~~~~~~g 290 (454)
+..+++.+.+.+....+.. .+...++....+|...|.+..+...-+...+.+.... -|+. +..+|.+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 6667777777776666653 2555566666666666666666665555444322111 1222 223444556
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHH-------------------------HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVT-------------------------FLSVLNACSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
+++.++..|.+.......|+..+ ...-...+.+.|++..|+..|.++++. -+.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~ 390 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPE 390 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCc
Confidence 66666666666554333333221 111133456678888888888888774 245
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
|...|..-.-+|.+.|.+..|+.-.+...+..| ....|..-..++....++++|.+.|.+.++.+|.+......+.++.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 677788888888888888888877777666633 3455655566666667888888888888888777666555555555
Q ss_pred Hh
Q 012879 425 AG 426 (454)
Q Consensus 425 ~~ 426 (454)
..
T Consensus 471 ~a 472 (539)
T KOG0548|consen 471 EA 472 (539)
T ss_pred HH
Confidence 54
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=5.3e-08 Score=88.99 Aligned_cols=261 Identities=11% Similarity=-0.046 Sum_probs=145.1
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCCChhhHHh---HHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 180 GYTRMNRSNEALALFRKMVACEYTEPSEITILA---VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
.+...|++++|.+.+++..+. .|.+...+.. ........+..+.+.+.+... .+..|........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 455667777777777777663 2333333332 111112234444444444441 112333445555666777778
Q ss_pred CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCcH--HHHHHHHHHHhcCCChHHHHH
Q 012879 257 GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL-KPNR--VTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~ 332 (454)
|++++|.+.+++..+..| +...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888777655 455666777777788888888888877665422 1222 234456667777888888888
Q ss_pred HHHHHHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HhcCC---CCCCcHhHHHHHHHHHHcCCChhHHHHHH
Q 012879 333 FFDKMVEECEVLPDIKHY-G--CLIDMLGRAGRLEQAEKT---ALGIP---SEITDVVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
+++.........+..... + .++.-+...|....+.++ ..... ..............++...|+.+.|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888775321111111111 1 222333333432222222 11111 10011122234566777888888888888
Q ss_pred HHHHHhhcC---------CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 404 RKILEMERG---------YGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 404 ~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+.+...... ........+.++.+.|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887653322 22334455666778899999988888776643
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=1.6e-07 Score=85.62 Aligned_cols=397 Identities=9% Similarity=0.049 Sum_probs=247.7
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.=+..|-..+..+.++|+.-.....|+...+ ...+. - ....|...+.-....+-++-+.++++.-++..
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALr--aLpvt--q---H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---- 168 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALR--ALPVT--Q---HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---- 168 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHH--hCchH--h---hccchHHHHHHHHhCCChHHHHHHHHHHHhcC----
Confidence 3346788888888899999999999998873 22222 2 55678888888888888999999998887643
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCC----------CchhHHHHHHHHHhcCC---HHHHHHHHhhCCC--CC--c
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPER----------NLVTWNVMITGLVKWGE---LEFARSLFEEMPC--RN--V 171 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~--~~--~ 171 (454)
+..-+-.+..+++.+++++|.+.+..+... +...|..+.....+.-+ --....+++.+.. +| .
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 334677888889999999999999988742 33456665555554433 2234455555554 33 3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc----------------------hhHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD----------------------VKSCQLI 229 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~ 229 (454)
..|++|...|.+.|.+++|.++|++..+. ..+..-|..+.++|+.-.. ++-...-
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 57899999999999999999999998764 2344445555555543211 1111222
Q ss_pred HHhhhhcCC----------CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CC------ChhhHHHHHHHHHhcCCh
Q 012879 230 HGYGEKRGF----------TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RK------NLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 230 ~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~------~~~~~~~l~~~~~~~g~~ 292 (454)
|+.+..... .|.+...|..-+. +..|+..+-...|.++... .| -...|..+...|-..|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 222222210 1112222222222 2246666777777776654 22 223577778888888999
Q ss_pred hHHHHHHHHHHhCCCCCc---HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-----------------ChhHHHH
Q 012879 293 KEAVENFGRMQKVGLKPN---RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-----------------DIKHYGC 352 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~ 352 (454)
+.|..+|++..+...+-- ..+|..-...=.+..+++.|.++.+..... .-.| +...|..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 999999988877533211 234444444445667788888888887654 1111 2234555
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC--CCcHHHHHHHHHh---
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAG--- 426 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~--- 426 (454)
+++.--..|-++....+++++.+. ..++...-.....+-.+.-++++.+++++-+.+-+-+ ...|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 556566677888888888888776 2222222222233345566788888888776654332 2345544443332
Q ss_pred cCCcCcHHHHHHHHhh
Q 012879 427 VGRFGDAERLRRVMDE 442 (454)
Q Consensus 427 ~g~~~~a~~~~~~~~~ 442 (454)
.-+.+.|..+|++..+
T Consensus 563 g~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD 578 (835)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3467889999999887
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=98.25 Aligned_cols=221 Identities=13% Similarity=0.092 Sum_probs=181.1
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 294 (454)
-+.+.|++..|.-.|+..++. .|.+...|..|.......++-..|+..+.+..+..| |......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 346788899999999998887 677889999999999999999999999999998877 67788888889999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHH-----------HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVL-----------NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
|+..++.-+...++ |..+. ..+.....+....++|-++....+..+|+.+...|.-.|--.|.+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999887664311 10011 112222334556666766666556667888888888889999999
Q ss_pred HHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 364 EQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
++|...|+.+....| |...||.|.-.++...+.++|+..+.+++++.|....+...|+-.|...|.+++|.+.|-....
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999988845 6789999999999999999999999999999999999999999999999999999998866554
Q ss_pred c
Q 012879 443 R 443 (454)
Q Consensus 443 ~ 443 (454)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 3
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=3.2e-09 Score=91.97 Aligned_cols=250 Identities=12% Similarity=0.018 Sum_probs=152.4
Q ss_pred HHhcCCHHHHHHHHhhCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH
Q 012879 150 LVKWGELEFARSLFEEMPCR----NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS 225 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (454)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.. +.+|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~--~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK--SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T--TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc--CCChhHHHHHHHHHHHhCccchHH
Confidence 334566666664443 2111 2234445667777777766543 33333 235666666555555544445555
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+..-++.....+..+.++.........+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555444433323224444444455666778888888877654 45666677778888888888888888888764
Q ss_pred CCCCcHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH
Q 012879 306 GLKPNRVTFLSVLNACS----HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV 380 (454)
Q Consensus 306 ~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 380 (454)
. .| .+...+..++. -.+.+.+|..+|+++.. .+.+++.+.+.+.-++...|++++|.+++.+.... +-++
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 2 23 33444444433 23468888888888765 45677788888888888888888888888887766 3456
Q ss_pred hHHHHHHHHHHcCCCh-hHHHHHHHHHHHhhcCCC
Q 012879 381 VVWRTLLGACSFHGNV-EMGERVTRKILEMERGYG 414 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 414 (454)
.+...++.+....|+. +.+.+.+.++....|.++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6676777777777777 667778888777766543
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.5e-07 Score=82.73 Aligned_cols=398 Identities=11% Similarity=0.073 Sum_probs=205.6
Q ss_pred chhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHH--hccCC
Q 012879 12 NITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTC--ATLSH 89 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~--~~~~~ 89 (454)
+.+.+.-..++...+ .|+..+..-+-++.+.+++++|+.+.+.-. ..... +... +=.+| -+.+.
T Consensus 29 e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~------~~~~---fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 29 EEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVI------NSFF---FEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhc------chhh---HHHHHHHHHccc
Confidence 344444444555444 667777777778889999999986554432 10100 1111 23333 36777
Q ss_pred cchHhHHHHHHHHcCCCCC-chhHHHHHHHHHhCCChhHHHHHHhhCCCCC-----------------------------
Q 012879 90 PNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDEMPERN----------------------------- 139 (454)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------------- 139 (454)
.++|...++ |..++ ..+...-...+-+.|++++|..+|+.+.+.+
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 888887776 33333 3355666667778888888888888774311
Q ss_pred --chhHHHHHH---HHHhcCCHHHHHHHHhhCC--------CCCc----------chHHHHHHHHHhcCChHHHHHHHHH
Q 012879 140 --LVTWNVMIT---GLVKWGELEFARSLFEEMP--------CRNV----------VSWTGIIDGYTRMNRSNEALALFRK 196 (454)
Q Consensus 140 --~~~~~~ll~---~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (454)
..+|..+.+ .++..|++.+|+++++... +.|. ..-..+...+...|+.++|.++|..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 123333332 3567889999999887761 1111 1233455667788999999999988
Q ss_pred HHHccCCCCChhhHHhHHHHH---HccCc-hh-HHHHHHH------------hhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 197 MVACEYTEPSEITILAVLPAI---WQNGD-VK-SCQLIHG------------YGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~---~~~~~-~~-~a~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
.++. .++|........+-+ ....+ ++ .+...++ .+.... -..++...+....-.+..
T Consensus 250 ~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q----k~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 250 IIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ----KQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhH
Confidence 8874 345553332222211 11111 11 0111111 111110 111111111111223444
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHH---
Q 012879 260 FSASKLFEDISVERKNLVSWTSIISGFA-MHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD--- 335 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--- 335 (454)
+.+.++-.......|....=+.+..+.. +...+..+.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5555555554443333322222222221 222456666666665554222223344445556666777777777777
Q ss_pred -----HHHHhcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHH
Q 012879 336 -----KMVEECEVLPDIKHYGCLIDMLGRAGR-------LEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 336 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
.+.+. +..|. +...+...+.+.++ .++|..+|..-....+. ..++..+...-.+.|+.++|..+
T Consensus 404 ~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44433 44443 33445555555443 45566666654433111 22333344444556777777777
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++++++..|.+..+...++.+|.+. +.+.|..+-+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 7777777777777777777666554 3344444433
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=1.6e-07 Score=79.19 Aligned_cols=319 Identities=8% Similarity=-0.022 Sum_probs=208.9
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.++.-.--+...+..+|.+..|+..|.... +.++. +-.++-.-...|...|+...|+.-+..+++. +||
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAv---e~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAV---EGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---cCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--Ccc
Confidence 444555567777888888999999988887 44433 3344444455688888888888888888774 566
Q ss_pred chh-HHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCh
Q 012879 109 VYV-NTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRS 187 (454)
Q Consensus 109 ~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (454)
-.. ...-...+.+.|.++.|..=|+.+.+.++.- +....++.+.--.++-.. ....+..+.-.|+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDC 171 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCch
Confidence 432 2233445678888888888888776532210 000111111111111111 12234455566777
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
..|+.....+++ ..+.|...+..-..+|...|++..|+.=++...+.. ..+...+..+-..+...|+.+.++....
T Consensus 172 ~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 778877777776 556667777777777778888877777666666652 2255666666777777788888877777
Q ss_pred HhhhcCCChhh----HHH---H------HHHHHhcCChhHHHHHHHHHHhCCCCCcHH---HHHHHHHHHhcCCChHHHH
Q 012879 268 DISVERKNLVS----WTS---I------ISGFAMHGMGKEAVENFGRMQKVGLKPNRV---TFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 268 ~~~~~~~~~~~----~~~---l------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~ 331 (454)
+..+..||... |.. + +......+++.++++..+...+........ .+..+-.++...|++.+|+
T Consensus 248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 77776665532 111 1 122345678888888888877764432233 3445667778889999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012879 332 NFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT 378 (454)
Q Consensus 332 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 378 (454)
+...++.. +.|+ +.++.--..+|.-...++.|+.-|+...+..+
T Consensus 328 qqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 328 QQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 99998884 4555 88888888999999999999999998887633
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=3.6e-07 Score=85.24 Aligned_cols=345 Identities=14% Similarity=0.039 Sum_probs=224.9
Q ss_pred HcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcc-h
Q 012879 102 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC----RNVV-S 173 (454)
Q Consensus 102 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~-~ 173 (454)
...+..|..+|..+.-+..+.|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-.. |+.. .
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344556778888888888888888888888888765 3445778888888888888888888876553 2222 2
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHHHcc-CC--CCChhhHHhHHHHHHccC-----------chhHHHHHHHhhhhcCC
Q 012879 174 WTGIIDGY-TRMNRSNEALALFRKMVACE-YT--EPSEITILAVLPAIWQNG-----------DVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 174 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~ 238 (454)
+-..-..| -+.+..++++++-.+..... +. ...+..|..+.-+|...- ...++.+.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 22222233 34577788887777776621 11 122334444444443221 1345667777777753
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCC------
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKP------ 309 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p------ 309 (454)
|.|+.+...+.--|+..++++.|.+...+..... .+...|..+.-.+...+++.+|+.+.+.... .|..-
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 4455555556666778888999999888887762 3777888888888888999999999887665 32200
Q ss_pred ------------cHHHHHHHHHHHhc---------C--------------CChHHHHHHHHHHHH---h----cC-----
Q 012879 310 ------------NRVTFLSVLNACSH---------G--------------GLVEEGLNFFDKMVE---E----CE----- 342 (454)
Q Consensus 310 ------------~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~~~---~----~~----- 342 (454)
...|...++..+-. . ++..++.+....+.. . .+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 01122222221110 0 111111111111110 0 01
Q ss_pred ----CCC--C------hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 343 ----VLP--D------IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 343 ----~~~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..| + ...|......+.+.+..++|...+.+.... +-....|......+...|..++|.+.|..++..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 011 1 123445566777888888888777777766 335677777788888999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHhcCCcCcHHH--HHHHHhhcccccC
Q 012879 410 ERGYGGDYVLMYNILAGVGRFGDAER--LRRVMDERNAFKV 448 (454)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~ 448 (454)
+|++.+....++.++.+.|+..-|.. ++..+.+.+....
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 99999999999999999999888888 8888888776543
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=9.2e-07 Score=80.82 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH--HHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI--RVLNCLIDT 252 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~ 252 (454)
..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++..+....+++. ..+..+...
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 34445666777777777777777763 34445556666666667777777777766666542111121 234456666
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 012879 253 YAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~ 271 (454)
+...|++++|.++|++...
T Consensus 196 ~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 196 YLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHCCCHHHHHHHHHHHhc
Confidence 7777777777777777644
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=3e-08 Score=85.96 Aligned_cols=221 Identities=12% Similarity=0.027 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCC-CC----CcchHHHHHHHHHhcC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMP-CR----NVVSWTGIIDGYTRMN 185 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~ 185 (454)
....+.+++...|+.+.++.-...-..|.......+...+...++-+.+..-++... ++ +..........+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 334455555556655554444433333444444333333333233444444443322 11 1111111222344445
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKL 265 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 265 (454)
++++|++++.+. .+.......+..+.+.++++.|.+.++.+.+..-...=.....+.+..+...+.+.+|.-+
T Consensus 117 ~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 117 DYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp HHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 555555555321 2334444555555555555555555555554321000001111222222223345556666
Q ss_pred HHHhhhc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 012879 266 FEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV-EEGLNFFDKMVE 339 (454)
Q Consensus 266 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 339 (454)
|+++.+. ++++.+.+.+..++...|++++|.+++.+..+... -+..++..++.+....|+. +.+.+++.++..
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6555554 23455555555555555666666655555544322 2344444455444444544 444555555544
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.5e-08 Score=90.41 Aligned_cols=362 Identities=14% Similarity=0.070 Sum_probs=240.0
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CCc-hhHHHHHHHHHhcCCHH
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RNL-VTWNVMITGLVKWGELE 157 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~ 157 (454)
.++....|+++.|...|.+.+... ++|...|..-..+|++.|++++|.+=-.+..+ |+. ..|+-...++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 345678899999999999999877 55888999999999999999999887766654 543 47999999999999999
Q ss_pred HHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHH---HHHHHHHHHcc--CCCCChhhHHhHHHHHHcc---------
Q 012879 158 FARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEA---LALFRKMVACE--YTEPSEITILAVLPAIWQN--------- 220 (454)
Q Consensus 158 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~--------- 220 (454)
+|+.-|.+-.+ | |...++-+..++.......+. -.++......+ ........|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998775 2 334556666655111000000 00000000000 0000001122222111110
Q ss_pred -CchhHHHHHHHh-----hhhcCC-------CC----------c-----------hHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 221 -GDVKSCQLIHGY-----GEKRGF-------TA----------F-----------DIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 221 -~~~~~a~~~~~~-----~~~~~~-------~~----------~-----------~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
..+..+...+.. ....+. .| . -..-...+.+...+..+++.|++.+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 001111111100 000000 00 0 1123456888899999999999999
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHhcCCChHHHHHHHHHHHH
Q 012879 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS-------VLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
........+..-++....+|...|.+..+...-....+.|-. ...-|+. +..++.+.++++.++.+|++...
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 998887645555667778899999888888777777666533 2223332 33466677888999999988776
Q ss_pred hcCCCCChhHH-------------------------HHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC
Q 012879 340 ECEVLPDIKHY-------------------------GCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH 393 (454)
Q Consensus 340 ~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 393 (454)
. ...|+...- ..=...+.+.|++..|+..|.+++...| |...|....-+|.+.
T Consensus 327 e-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 E-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred h-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5 334432211 1113456788999999999999888744 678899999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
|.+..|+.-.+..++++|.....|..=+.++....+|+.|.+.|.+-.+.+.
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998888888888899999999999999988877653
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=5.3e-08 Score=80.47 Aligned_cols=306 Identities=11% Similarity=0.059 Sum_probs=141.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHH-HHHHHHHhcC
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPC--RNVVSWT-GIIDGYTRMN 185 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~~ 185 (454)
+.+.+..+.+..++.+|++++..-.+. +......+..+|-...++..|-..++++.. |...-|. .-...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444445555556666666665554432 223444455555566666666666665553 3222222 1233445555
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHH--HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLP--AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.+..|+++...|.+ .|+...-..-+. .....+|+..+..+.++....| +..+.+.......+.|+++.|.
T Consensus 93 i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 93 IYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred ccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHH
Confidence 66666666655533 122221111111 1234455555555555443322 3344444444455555555555
Q ss_pred HHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH----HHHHHHHHhcCCChHHHHHHHHHH
Q 012879 264 KLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT----FLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 264 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+-|+...+.. .....||..+ +..+.|+++.|++...+++++|++..+.. -+-.+++- ..|+. ..+.+..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa 239 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA 239 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHHH
Confidence 5555555442 1223343333 23344555555555555555544311100 00000000 00000 0000000
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 338 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
-...+|.-...+.+.|+++.|.+.+-.|..+ ..|++|...+.-.- ..+++-+..+-+.-+++..|-+.
T Consensus 240 --------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 240 --------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred --------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh
Confidence 0011222222345667777777777777665 44566655443221 23445555555666666666666
Q ss_pred CcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 415 GDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
.++..++..|++..-++-|-.++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6777777777777766666665543
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=2.1e-06 Score=88.73 Aligned_cols=324 Identities=12% Similarity=0.008 Sum_probs=165.1
Q ss_pred HHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---c-----chHHHHHHHHH
Q 012879 119 YVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSLFEEMPC----RN---V-----VSWTGIIDGYT 182 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~---~-----~~~~~l~~~~~ 182 (454)
....|+++.+...++.+.. .+..........+...|++++|...+..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345555555555555431 1222222233334455666666665544321 00 0 11112233445
Q ss_pred hcCChHHHHHHHHHHHHccCCCCCh----hhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSE----ITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 254 (454)
..|++++|...+++.... ....+. .....+...+...|+++.|...+++.... |...........+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAE-LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 667777777777776552 111111 22344445556677777777776666542 111111234445566667
Q ss_pred hcCChhHHHHHHHHhhhc-----CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCC--cHHHHHHHHHHH
Q 012879 255 KCGCIFSASKLFEDISVE-----RK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV--GLKP--NRVTFLSVLNAC 321 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~-----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~~ 321 (454)
..|+++.|...+++.... .+ ....+..+...+...|++++|...+.+.... ...+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 777777777777665443 11 1122334445556667777777777665442 1111 122333344556
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHhcCCCCC-CcH----hHHHHHHHHHH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHY-----GCLIDMLGRAGRLEQAEKTALGIPSEI-TDV----VVWRTLLGACS 391 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~----~~~~~l~~~~~ 391 (454)
...|++++|...++..............+ ...+..+...|+.+.|.+++....... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 66777777777777664421100000000 111233445677777777766554431 111 11334556666
Q ss_pred cCCChhHHHHHHHHHHHhhcCC------CCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 392 FHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
..|++++|...++++.+..... ..+...++.++.+.|+.++|.+.+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776653221 123445667777777777777777766553
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.06 E-value=4.3e-06 Score=75.14 Aligned_cols=405 Identities=10% Similarity=0.042 Sum_probs=221.5
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHH
Q 012879 19 SHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHA 98 (454)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 98 (454)
+.-.+.+| -|+.+|+.||+-+..+ .++++.+.++++. ..-+. +...|..-|..-....+++..+.+|.
T Consensus 10 ~~rie~nP--~di~sw~~lire~qt~-~~~~~R~~YEq~~---~~FP~------s~r~W~~yi~~El~skdfe~VEkLF~ 77 (656)
T KOG1914|consen 10 RERIEENP--YDIDSWSQLIREAQTQ-PIDKVRETYEQLV---NVFPS------SPRAWKLYIERELASKDFESVEKLFS 77 (656)
T ss_pred HHHHhcCC--ccHHHHHHHHHHHccC-CHHHHHHHHHHHh---ccCCC------CcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45556666 8999999999988666 9999999999998 44333 66788888999999999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHHHHh-CCChhHHHH----HHhhCC-----C-CCchhHHHHHHH---------HHhcCCHHH
Q 012879 99 VISKVGFQSHVYVNTALVNMYVS-LGFLKDSSK----LFDEMP-----E-RNLVTWNVMITG---------LVKWGELEF 158 (454)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~----~~~~~~-----~-~~~~~~~~ll~~---------~~~~~~~~~ 158 (454)
..+..- .+...|...+..--+ .|+...+.. .|+-.. + .+...|+..+.. +....+++.
T Consensus 78 RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~ 155 (656)
T KOG1914|consen 78 RCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITA 155 (656)
T ss_pred HHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHH
Confidence 988764 456677766654332 344433222 222111 1 234456665544 445667888
Q ss_pred HHHHHhhCCC-C---------CcchHHHHHHHH-------HhcCChHHHHHHHHHHHHcc-CCCCChhh-----------
Q 012879 159 ARSLFEEMPC-R---------NVVSWTGIIDGY-------TRMNRSNEALALFRKMVACE-YTEPSEIT----------- 209 (454)
Q Consensus 159 A~~~~~~~~~-~---------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~~-~~~~~~~~----------- 209 (454)
..+++.++.. | |-..|..=|+.. -+...+..|.+++++....- |......+
T Consensus 156 vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 156 VRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 8888888764 1 212222212111 12334566666666654310 21111111
Q ss_pred ----HHhHHHHHHccC------ch--hHHHHHHHhhhhcCCCCchHHHHHHHH-------HHHHhcCC-------hhHHH
Q 012879 210 ----ILAVLPAIWQNG------DV--KSCQLIHGYGEKRGFTAFDIRVLNCLI-------DTYAKCGC-------IFSAS 263 (454)
Q Consensus 210 ----~~~l~~~~~~~~------~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~-------~~~a~ 263 (454)
|..++.---..+ .. ....-++++.... .+..+.+|.-.. +.+...|+ .+++.
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~--l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY--LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 222222111110 00 0111112222111 111222222211 22223333 33444
Q ss_pred HHHHHhhhc--CCChhhHHHHHHHHH---hcCChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 264 KLFEDISVE--RKNLVSWTSIISGFA---MHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
.+++..... ..+..+|..+.+.-- ..+..+.....++++... .+.| ..+|..+++...+...++.|..+|.++
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 444443332 112223333332111 111345555666665543 2233 345666666666667777777777777
Q ss_pred HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHH-HHHHHHHHcCCChhHHHHHHHHHHHhhcC---
Q 012879 338 VEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW-RTLLGACSFHGNVEMGERVTRKILEMERG--- 412 (454)
Q Consensus 338 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 412 (454)
.+. +..+ ++.++++++.-|| .++.+-|.++|+--....+|...| ...+.-+...++-..|..+|++++.....
T Consensus 393 R~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 RED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 776 5444 5666677776554 566777777777666664544433 44556666677777777777777766221
Q ss_pred CCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 413 YGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
....|..++.--...|+...+.++-+++-.
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 335677777777777777777766655543
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=5.7e-06 Score=79.71 Aligned_cols=367 Identities=10% Similarity=0.068 Sum_probs=199.2
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHH
Q 012879 21 LLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVI 100 (454)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 100 (454)
+.+.-+...|+.-.+..+.++...+-+.+-+++++++. -.... -+-+...-|.|+-.. -.-+..++.++.+++
T Consensus 974 v~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv---L~~S~---Fse~~nLQnLLiLtA-ikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 974 VQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV---LDNSV---FSENRNLQNLLILTA-IKADRTRVMEYINRL 1046 (1666)
T ss_pred HHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh---cCCcc---cccchhhhhhHHHHH-hhcChHHHHHHHHHh
Confidence 33344445677777888889999999999999999886 32221 111223333333333 333455666666666
Q ss_pred HHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-------------------------CCchhHHHHHHHHHhcCC
Q 012879 101 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-------------------------RNLVTWNVMITGLVKWGE 155 (454)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~~~~ll~~~~~~~~ 155 (454)
...+ .|+ +...+...+-+++|..+|+...- ..+..|..+..+-.+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 5543 222 22333444555666666554321 123345555555555555
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
+.+|++-|-+. .|+..|..++....+.|.+++-.+++.-.++. .-.|.. =..++-+|++.+++.+.+++..
T Consensus 1120 v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred hHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----
Confidence 55555544332 24444555555555555555555555444443 222322 2344555555555544443321
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.|+......+.+-+...|.++.|.-+|..+ ..|..|...+...|++..|.+.-++. .+..||.
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 114444444555555555555555554433 33667777777777777777665442 2566787
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 394 (454)
.+-.+|...+.+.-| +|... ++.....-...++.-|...|.+++.+.+++..... ......|+-|.-.|.+-
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 777787776655433 12211 22234455677888888899999998888887765 33445566666666554
Q ss_pred ChhHHHHHHHHHHHhh--------cCCCCcHHHHHHHHHhcCCcCcHH
Q 012879 395 NVEMGERVTRKILEME--------RGYGGDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~ 434 (454)
++++-.+.++-....- .+....|..+...|.+-..++.|.
T Consensus 1327 kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3344433333222110 012335666777777766666654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.2e-08 Score=89.10 Aligned_cols=252 Identities=13% Similarity=0.026 Sum_probs=197.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
..-+.+.|+..+|.-.|+..++ ..|-+...|..|.......++-..|+..+++..+. .|.+..+...|.-.|...|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhh
Confidence 4456788999999999999988 44667889999999999999999999999999997 6779999999999999999
Q ss_pred ChhHHHHHHHHhhhcCCChh----------hHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCcHHHHHHHHHHHhcCCC
Q 012879 258 CIFSASKLFEDISVERKNLV----------SWTSIISGFAMHGMGKEAVENFGRMQ-KVGLKPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~ 326 (454)
.-..|.+.++.-....|.-. .-+. ..+..........++|-++. +.+..+|+.....|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999988755422110 0000 11222223445555555554 45545677777777777888999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
+++|.+.|+.+... -+-|..+|+.|...++...+.++|+..|+++++..|. +++...|..+|...|.+++|...|-.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999863 2345788999999999999999999999999998776 56778899999999999999999999
Q ss_pred HHHhhcC-----C-----CCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 406 ILEMERG-----Y-----GGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 406 ~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
++.+.+. . ...|..|-.++.-.++.+.+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9877655 1 136777777788888887555543
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.01 E-value=1.7e-07 Score=92.55 Aligned_cols=235 Identities=14% Similarity=0.150 Sum_probs=182.0
Q ss_pred cchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHhcCCHHHHHH
Q 012879 90 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVKWGELEFARS 161 (454)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~A~~ 161 (454)
++.|.+....++. . |-+...|...|......++.++|.+++++... .-...|.++++.-..-|.-+...+
T Consensus 1441 pesaeDferlvrs-s-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRS-S-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhc-C-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 4444444444333 2 44566788999999999999999999998874 234578888888888888888999
Q ss_pred HHhhCCC-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCC
Q 012879 162 LFEEMPC-RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT 239 (454)
Q Consensus 162 ~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (454)
+|++..+ -| ...|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+. .
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 9998876 23 357888999999999999999999999984 4466778889999999999999999999998886 4
Q ss_pred Cc--hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHH
Q 012879 240 AF--DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTF 314 (454)
Q Consensus 240 ~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 314 (454)
|. ........+..-.+.|+.+.+..+|+......| -...|+..|+.-.++|+.+.+..+|++....++.|-. ..|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 43 455667778888899999999999999888766 6678999999999999999999999999988777643 345
Q ss_pred HHHHHHHhcCCChHHH
Q 012879 315 LSVLNACSHGGLVEEG 330 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a 330 (454)
...+..=-..|+-+.+
T Consensus 1675 KkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHhcCchhhH
Confidence 5555444444554433
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=4.9e-07 Score=84.91 Aligned_cols=259 Identities=12% Similarity=0.114 Sum_probs=158.1
Q ss_pred hhhhhHHHHHH--HHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHc-C-
Q 012879 29 HHSQLFNTLLH--FYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKV-G- 104 (454)
Q Consensus 29 ~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~- 104 (454)
=|..|-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+.++.+-|.-.+..|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 35556666665 4778899999999888886 6778999999999988888777666665431 1
Q ss_pred -------CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CcchHHH
Q 012879 105 -------FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR-NVVSWTG 176 (454)
Q Consensus 105 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 176 (454)
..|+ .+-....-.....|.+++|+.++++..+ |..|-..|...|.+++|.++-+.=..- =..||..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~ 863 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYN 863 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHH
Confidence 1122 2223344445678999999999988755 555667788889999998887654331 2246767
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
....+-..++.+.|++.|++.... -...+..|. .++...+.+.+.+ .+...|.......-..
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~h-----afev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVH-----AFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESV 925 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCCh-----HHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcc
Confidence 777777788899999988875221 111111111 0111111111111 1445566666666666
Q ss_pred CChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 257 GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
|+.+.|+.+|..... |-.++...|-.|+.++|-++-++- | |......+.+.|-..|++.+|..+|.+
T Consensus 926 GemdaAl~~Y~~A~D-------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD-------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cchHHHHHHHHHhhh-------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777766554 455555555566666666554431 1 333344455566666666666666555
Q ss_pred HH
Q 012879 337 MV 338 (454)
Q Consensus 337 ~~ 338 (454)
..
T Consensus 993 Aq 994 (1416)
T KOG3617|consen 993 AQ 994 (1416)
T ss_pred HH
Confidence 43
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2e-06 Score=80.96 Aligned_cols=213 Identities=12% Similarity=0.113 Sum_probs=151.6
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHH-----hcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHH
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQI-----YTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISK 102 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 102 (454)
..+..+|..+.+.|.+.++++-|.-.+-.|.+. .+...++ | + .+=....-.....|..++|..+|.+..+
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-G---E-EDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-C---c-chhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467789999999999999999998888877631 0011110 1 1 2222333344578899999999998876
Q ss_pred cCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-------------
Q 012879 103 VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER-NLVTWNVMITGLVKWGELEFARSLFEEMPC------------- 168 (454)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~------------- 168 (454)
.+ .|=+.|-..|.+++|.++-+.-.+- =-.||.....-+-..+|++.|++.|++...
T Consensus 829 ~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 YD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred HH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 54 3445677889999999887654432 224676777777788899999999887642
Q ss_pred ----------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 169 ----------RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 169 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
.|...|.-....+-..|+.+.|+.+|....+ |..+++..|-.|+.++|.++-++ .|
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e---sg- 965 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE---SG- 965 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh---cc-
Confidence 2444555566666677888888888877765 45667777788888888877654 22
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
|......|.+.|-..|++.+|..+|.+...
T Consensus 966 ---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 966 ---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667777888889999999999988887654
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=3.6e-07 Score=90.40 Aligned_cols=250 Identities=12% Similarity=0.106 Sum_probs=190.6
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcC-CCC--chHHHHHHHHHHHHhcCChhHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG-FTA--FDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a 262 (454)
.++.|.+.-+..+. .|-+...|...+......++.++|.++.+++...= +.. .-..+|.++++.-..-|.-+..
T Consensus 1440 ~pesaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 34455554444443 24456778888888899999999999999887751 111 1245788888888888888899
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 012879 263 SKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE 342 (454)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (454)
.++|+++.+......+|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+...
T Consensus 1517 ~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 9999999886555678899999999999999999999999875 234677888899999999999999999999987421
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---CcHH
Q 012879 343 VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYV 418 (454)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 418 (454)
-.-........+..-.+.|+.+.+..+|+......| ....|+.+++.-.++|+.+.+..+|+++++++.... ..|.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 112345556667777899999999999998887744 467899999999999999999999999998876632 2344
Q ss_pred HHHHHHHhcCCcCcHHHHHHH
Q 012879 419 LMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~ 439 (454)
.++..-...|+-+.++.+-.+
T Consensus 1676 kwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHH
Confidence 556666666777666555433
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.1e-06 Score=80.02 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=159.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHH
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 248 (454)
.|+......+.++...+-+.+-+++++++.-.+..-....-...++-.-+-..+...+.++.+++-.-. .++
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD--a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD--APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC--chh------
Confidence 456666677788888888888888888875431111111222222222233334455555555554432 111
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc-----------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVE-----------------------RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+.......+-+++|.++|++.... -..+.+|..+..+-.+.|...+|++-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 122222333344444444432110 124567899999999999999998877542
Q ss_pred CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH
Q 012879 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT 385 (454)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 385 (454)
-|+..|..+++...+.|.+++-.+++....+. .-.|.+. +.|+-+|++.++..+.++++.. |+......
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~g-----pN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIAG-----PNVANIQQ 1199 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhcC-----CCchhHHH
Confidence 36778999999999999999999999988876 5566544 6789999999999998877653 77777788
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
+.+-|...|.++.|.-++. +...|..++..+...|.++.|...-++
T Consensus 1200 vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888888877766 344677777777777877777665544
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=2.7e-07 Score=78.83 Aligned_cols=185 Identities=11% Similarity=-0.007 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTF 314 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 314 (454)
.....+..++..+...|+++.|...|+++....|+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356667777777888888888888888877765532 35566777778888888888888887764321111 133
Q ss_pred HHHHHHHhcC--------CChHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH
Q 012879 315 LSVLNACSHG--------GLVEEGLNFFDKMVEECEVLPDI-KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT 385 (454)
Q Consensus 315 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 385 (454)
..+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~------------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL------------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH------------HHHHHH
Confidence 3344444433 6788888888888865 2332 22222211110 10000 011124
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+...+.+.|++++|+..++++++..|.+ +..+..++.++.+.|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999887764 3578899999999999999999998887654
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=1.7e-06 Score=80.51 Aligned_cols=284 Identities=14% Similarity=0.145 Sum_probs=141.9
Q ss_pred HHHHHHHhCCChhHHHHHHhhC--CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------hH---------
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEM--PERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV--------SW--------- 174 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--------~~--------- 174 (454)
+.|..|.+.|.+..|.+....= ...|......+..++.+..-+++|-++|+.+..++.. .|
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 4567777777777666543221 1245555555666666666666666666666543211 00
Q ss_pred ----------HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 175 ----------TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 175 ----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
......+...|+++.|+.-|-+.. .....+.+......|.+|..+++.+..+.. ...
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~---~s~ 766 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASG 766 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccc
Confidence 011111222233333322222211 111223334444555555555555554421 233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
.|..+.+.|...|+++.|.++|-+... ++-.|..|.+.|+++.|.++-.+. .|...+...|..-..-+-+.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhh
Confidence 445555666666666666666654332 444555666666666666554432 23333444444444445555
Q ss_pred CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
|++.+|.++|-.+ |. |+ .-|..|-+.|..++.+++.++-... .-..|...+..-|-..|+...|.+.|-
T Consensus 838 gkf~eaeqlyiti----~~-p~-----~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 838 GKFAEAEQLYITI----GE-PD-----KAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred cchhhhhheeEEc----cC-ch-----HHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 6666665555443 21 32 2344566666666666665554332 112344555566666777777776665
Q ss_pred HHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 405 KILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++. -|.....+|...+-|++|-++-+
T Consensus 907 ea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 907 EAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 543 34455566666666666665543
No 107
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=4.9e-07 Score=79.50 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=69.6
Q ss_pred hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHH
Q 012879 259 IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMG--KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD 335 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 335 (454)
+++++..++++.+..| +..+|+...-.+.+.|+. ++++.+++++.+...+ |..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444444444444333 333343333333333321 3344444444443211 33444444444444444555555555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC----CChhHHHHHH
Q 012879 336 KMVEECEVLPDIKHYGCLIDMLGRA---GRL----EQAEKTALGIPSE-ITDVVVWRTLLGACSFH----GNVEMGERVT 403 (454)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~----g~~~~A~~~~ 403 (454)
.+.+. +. .+...|+.....+.+. |.. ++++++..++... +-|...|+.+...+... ++..+|.+.+
T Consensus 167 ~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-DV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-CC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 54443 21 1223333332222222 111 2344444333333 22445555555555442 2334466666
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHh
Q 012879 404 RKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.++.+.++.++.+...+++.|..
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHh
Confidence 66555555555555566666654
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=2.3e-06 Score=79.63 Aligned_cols=313 Identities=14% Similarity=0.135 Sum_probs=190.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHH
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTA 114 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (454)
.+.++++...|.-++|-++-+ ..| .+ ...|+.|.+.|.+..|.+....-.. +..|......
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~------sdg----------d~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ 653 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE------SDG----------DG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEH 653 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc------ccC----------cc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHH
Confidence 445566666777666654311 111 11 2456777788877776654332111 2334444444
Q ss_pred HHHHHHhCCChhHHHHHHhhCCCCCch--------hH-------------------HHHHHHHHhcCCHHHHHHHHhhCC
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPERNLV--------TW-------------------NVMITGLVKWGELEFARSLFEEMP 167 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~-------------------~~ll~~~~~~~~~~~A~~~~~~~~ 167 (454)
+..++.+..-+++|-.+|+++..++.. .| ...-..+...|+++.|+..|-+..
T Consensus 654 ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 444444444445555555544432211 01 111122334555555555553321
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHH
Q 012879 168 CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLN 247 (454)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (454)
..-..+.+.....+|.+|+.+++.+... +.-...|..+...|+..|+++.|+++|-+. ..++
T Consensus 734 -----~~~kaieaai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~ 795 (1636)
T KOG3616|consen 734 -----CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA----------DLFK 795 (1636)
T ss_pred -----hHHHHHHHHhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc----------chhH
Confidence 1223345666778899999999888764 344566888889999999999999888643 2355
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCCh
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV 327 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 327 (454)
..+..|.+.|+++.|.++-++..........|-+-..-+-+.|++.+|.+++-... .|+ ..|..|-+.|..
T Consensus 796 dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ 866 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLD 866 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcc
Confidence 67888999999999999888877633355667777777888899888888775432 343 346677788888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
+..+++.++.... .-..|...+..-|...|++..|.+-|-+.-+ |..-++.|...+-+++|.++.+
T Consensus 867 ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 867 DDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------HHHHHHHhhhhhhHHHHHHHHh
Confidence 8877776655322 1123455667777788888888877765543 4455556666666666655443
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=2.4e-07 Score=75.62 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
..+-..+...|+-+....+..+.....| |....+..+....+.|++..|...+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4444444444544444444444333222 33344444455555555555555555544431 334455555555555555
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
+++.|..-|.+..+. ..-++..++.+.-.|.-.|+.+.|..++.......+ |..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555554442 111233344444444445555555555544444322 34444444444445555555544443
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.4e-07 Score=87.42 Aligned_cols=223 Identities=13% Similarity=-0.024 Sum_probs=174.6
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
+|--..-..+...+...|-...|..+++++ ..+..++.+|...|+..+|..+..+..+.+||+..|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 343344455666677778888888877754 4466678889999999999998888887778888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+.+ -..+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhh
Confidence 8887777788888888764322 1111222233478999999999988765333 456777888888899999
Q ss_pred HHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 364 EQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..|.+.|.......|| ...||.+-.+|.+.|+..+|...+.++++.+..+...|....-.....|.+++|.+.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999988887564 678999999999999999999999999999977888888888888999999999999999877
Q ss_pred ccc
Q 012879 443 RNA 445 (454)
Q Consensus 443 ~~~ 445 (454)
...
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 543
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.7e-06 Score=80.42 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=165.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 143 WNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 143 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.+. +||+.-|..+.+......-
T Consensus 401 q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChHH
Confidence 3456667788888888888888764 5777888888888888888888877753 6888888888887777777
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+++|.++.+..... +-..+.....+.++++++.+.|+.-....| ...+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 77777777654332 223333334457888888888887777655 667788777788888888888888887
Q ss_pred HHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C
Q 012879 302 MQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---I 377 (454)
Q Consensus 302 m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 377 (454)
-... .|+ ...|+.+-.+|.+.++..+|...+.+..+. + .-+..+|...+....+.|.+++|.+.+.++... .
T Consensus 545 cvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 545 CVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred Hhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 7664 444 457888888888888888888888888876 4 345667777777788888888888888776554 2
Q ss_pred CcHhHHHHHHHHH
Q 012879 378 TDVVVWRTLLGAC 390 (454)
Q Consensus 378 p~~~~~~~l~~~~ 390 (454)
-|..+...++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 2444444444433
No 112
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=5.2e-06 Score=73.15 Aligned_cols=208 Identities=11% Similarity=0.018 Sum_probs=121.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
-..+...++.++|+.++.++++. .+-+..+|+.-..++...| +++++...++.+.+. .|.+..+|+....++.+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHc
Confidence 33445556677777777777653 2333344554445555555 456777777777665 344555666555555555
Q ss_pred CCh--hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC---CCh---
Q 012879 257 GCI--FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG---GLV--- 327 (454)
Q Consensus 257 g~~--~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~--- 327 (454)
|+. +++..+++++.+..| |..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 542 566777767666644 6667777777777777777777777777776543 344444444333332 222
Q ss_pred -HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHc
Q 012879 328 -EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA----GRLEQAEKTALGIPSE-ITDVVVWRTLLGACSF 392 (454)
Q Consensus 328 -~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~ 392 (454)
++...+...++.. .+-+...|+.+...+... ++..+|.+++.+.... ..+......|++.|..
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3455666555543 233456666666666652 3445677777665554 3345666667777764
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=2.5e-07 Score=75.76 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=96.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
+..|...|+++.+....+.+.. |. . .+...++.+++...+++..+.. +.+...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4567777777776555433322 11 0 1112455666666666666543 3466677777777777777777
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDML-GRAGR--LEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
|...|++..+. .+.+...+..+..++ ...|+ .++|.+++++.....| +..++..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777653 223456666666653 55565 4777777777777633 556677777777777777777777777
Q ss_pred HHHhhcCCCC
Q 012879 406 ILEMERGYGG 415 (454)
Q Consensus 406 ~~~~~~~~~~ 415 (454)
+++..|.+..
T Consensus 170 aL~l~~~~~~ 179 (198)
T PRK10370 170 VLDLNSPRVN 179 (198)
T ss_pred HHhhCCCCcc
Confidence 7777776553
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=7.7e-07 Score=75.99 Aligned_cols=184 Identities=13% Similarity=-0.000 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh---hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH---
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE---ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR--- 244 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 244 (454)
...+..+...+...|++++|...|+++... .+.+. .++..+..++...|+++.|...++.+.+.. |.++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 344555555566666666666666665542 11111 244555555566666666666666665542 21221
Q ss_pred HHHHHHHHHHhc--------CChhHHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 245 VLNCLIDTYAKC--------GCIFSASKLFEDISVERKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 245 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.+..+..++... |++++|.+.|+++....|+.. .+..+..... ... .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 333444444433 566777777777766555432 2211111000 000 00 00011
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+...+.+.|++++|...++.+...++-.| ....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344456667777777777777766522222 2456666777777777777777776665544
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=7.3e-07 Score=86.46 Aligned_cols=134 Identities=10% Similarity=0.044 Sum_probs=71.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3455555555555566666666666655553 232 233444455555556666666655555542 22233444455
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..++.+.|++++|..+|+++....|+ ..++..+..++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55555556666666666655544332 455555555555566666666666665554433
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=8.3e-07 Score=72.72 Aligned_cols=116 Identities=8% Similarity=0.029 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH-HhcCC--hhH
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY-AKCGC--IFS 261 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 261 (454)
++.++++..+++..+ ..+.|...|..+...+...|+++.|...+++..+. .|.+..++..+..++ ...|+ .++
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 344444444444444 22333444444444444444444444444444443 233444444444432 33333 244
Q ss_pred HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 262 ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 262 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
|.+++++..+..| +..++..+...+.+.|++++|+..|+++.+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444433 333444444444444444444444444444
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=3.2e-06 Score=83.00 Aligned_cols=240 Identities=11% Similarity=0.002 Sum_probs=146.2
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMPC--RNV-VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (454)
+...+..|+..+...+++++|.++.+...+ |+. ..|-.+...+...++.+++..+ .+. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------------~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------------D 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh----------------h
Confidence 445677777777777777777777775443 332 3344444455666665555444 222 2
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 294 (454)
......++..+..++..+... +.+..++..+..+|-+.|+.++|..+++++.+..| |+.+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 222233343344444444443 22555777788888888888888888888877765 677778888777777 7888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
|.+++.+.... +...+++..+.++|..+... .+.+...+..+.+.....-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhcc-----------
Confidence 88777766543 44455677777777777653 222222222222222111001
Q ss_pred CCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCc
Q 012879 375 SEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432 (454)
Q Consensus 375 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (454)
.--+.++..+-..|...+++++++.+++.+++..|.+..+...++.+|. +++..
T Consensus 220 --~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 220 --TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred --chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 0123445556667777888888888888888888888888888888876 44444
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=3.1e-05 Score=80.23 Aligned_cols=370 Identities=10% Similarity=-0.027 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (454)
..+......+...|++.+|........ .. + .-..............|+++.+..+++.+.......++..
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~------d~--~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l 411 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAG------DA--Q--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRL 411 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC------CH--H--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcch
Confidence 455666777888999998887665553 11 0 0111222233345567888877777766532222233444
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC----CC---c---h--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CCc----
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE----RN---L---V--TWNVMITGLVKWGELEFARSLFEEMPC----RNV---- 171 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~---~--~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~---- 171 (454)
.......+...|+++++...++.... .+ . . ....+...+...|++++|...+++..+ .+.
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 44555666788999999888876532 11 1 1 112223445688999999999887542 121
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccC----CCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCC--Cc
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEY----TEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFT--AF 241 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~ 241 (454)
...+.+...+...|++++|...+++...... ..+...++..+...+...|+++.|...+++.... +.. +.
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 2345566677889999999999988865311 1111234556677788999999999988876653 211 11
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc----CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVE----RK--NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPNR 311 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~ 311 (454)
....+..+...+...|++++|...+.+.... .+ ....+..+...+...|++++|.+.+++.... +..+..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 2334556677788889999999999887553 12 1233444566778899999999999887542 111111
Q ss_pred HH-H-HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CC--c
Q 012879 312 VT-F-LSVLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-----IT--D 379 (454)
Q Consensus 312 ~~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p--~ 379 (454)
.. . ...+..+...|+.+.|..++...... ..... ...+..+..++...|+.++|...+++.... .+ .
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 01 0 11223445578999999887775432 11111 111345677888999999999999887654 11 2
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 380 VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..+...+..++...|+.++|.+.+.++++....
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 345666778889999999999999999988765
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.4e-06 Score=69.83 Aligned_cols=249 Identities=13% Similarity=0.040 Sum_probs=125.6
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 149 GLVKWGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
-+.-.|++..++..-..... .++..-..+.++|...|++...+.-. .. +-.|....+..+.......+..+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~--~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE--GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc--ccCChHHHHHHHHHHhhCcchhHHH
Confidence 34445666666655544332 23334444556666666655443322 11 2234444444444444444443333
Q ss_pred H-HHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 227 Q-LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
. .+.+.+.... ...+......-...|+..|++++|++..+.. .+......=+..+.+..+.+-|.+.+++|.+-
T Consensus 92 ~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 3333333332 1112233333345566667777777666652 23333333344455566666677666666653
Q ss_pred CCCCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH
Q 012879 306 GLKPNRVTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV 380 (454)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 380 (454)
-+..|.+.|..++.+ .+....|.-+|++|.+ +.+|+..+.+...-++...|++++|..++++...+ ..++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 244555555555432 2346666666666654 35566666666666666666666666666666665 3344
Q ss_pred hHHHHHHHHHHcCCChh-HHHHHHHHHHHhhcC
Q 012879 381 VVWRTLLGACSFHGNVE-MGERVTRKILEMERG 412 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~ 412 (454)
.+...++.+-...|... -..+.+..+....|.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 55544554444444433 334444444444443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=2.7e-07 Score=71.46 Aligned_cols=124 Identities=9% Similarity=-0.103 Sum_probs=91.7
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 297 ENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.++++..+. .|+. +..+...+...|++++|...|+..... -+.+...+..+..++.+.|++++|...|++....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555543 3443 444566677888888888888888753 2345777788888888888888888888888776
Q ss_pred -CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 377 -ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 377 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
+.+...+..+..++...|++++|+..++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34667888888888888888888888888888888888777766665543
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=2.6e-06 Score=81.82 Aligned_cols=377 Identities=13% Similarity=0.037 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChh
Q 012879 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 126 (454)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 126 (454)
...|+..|-+.. +..+. =...|..|...|...-+...|.+.|....+.+ ..+...+..+.+.|++..+++
T Consensus 474 ~~~al~ali~al---rld~~------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 474 SALALHALIRAL---RLDVS------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHHHHHHHH---hcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHH
Confidence 566666665555 44444 23478888888887778888888888887765 456777888888899999999
Q ss_pred HHHHHHhhCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012879 127 DSSKLFDEMPERN-----LVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMV 198 (454)
Q Consensus 127 ~a~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (454)
.|..+.-...+.+ ...|...--.|.+.++...|..-|+...+ .|...|..++.+|...|++..|+++|.+..
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 8888844433321 12333444456778888888888887665 345677788889999999999999998876
Q ss_pred HccCCCCChhh-HHhHHHHHHccCchhHHHHHHHhhhhcCCC-----CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 199 ACEYTEPSEIT-ILAVLPAIWQNGDVKSCQLIHGYGEKRGFT-----AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 199 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.. .|+... ---.....+..|.+.++...+..+....-. ..-..++..+...+.-.|-..+|..++++..+.
T Consensus 624 ~L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 624 LL---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hc---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 53 444322 222223446778888888877776653110 001122222222222233333344444332221
Q ss_pred -------C--CChhhHHHHHHHHHh---cC-Ch--hHHHHHH-HHHHhCCCCC--------------------cHHHHHH
Q 012879 273 -------R--KNLVSWTSIISGFAM---HG-MG--KEAVENF-GRMQKVGLKP--------------------NRVTFLS 316 (454)
Q Consensus 273 -------~--~~~~~~~~l~~~~~~---~g-~~--~~A~~~~-~~m~~~~~~p--------------------~~~~~~~ 316 (454)
. .+...|-.+-++|.- .. +. .....++ .+....+.-| +..+|..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 1 122222222222110 00 00 0001111 1111111111 1222222
Q ss_pred HHHHHhc----CC----ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHH
Q 012879 317 VLNACSH----GG----LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLL 387 (454)
Q Consensus 317 l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 387 (454)
+...|.+ .| +...|+..+...++. -..+..+|+.| ......|++.-|...|-+.... +....+|..+.
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccc
Confidence 2222211 11 122344444444432 11223333333 3334456666666655544443 33456677777
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
..+.+..|++-|...|.+.+...|.+...|...+......|+.-++..+|..
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7777888888888888888888888888887777777778877777777655
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=7.8e-06 Score=66.96 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=49.4
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCCh
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 396 (454)
.+..+++-|.+.++.|.+- .+..+.+.|..++.+ .+.+.+|.-+|+++.++ .|++.+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 3444455555555555431 223333333333332 23344555555555553 44555555555555555555
Q ss_pred hHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 397 EMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
++|..++++++...+.++.+...++.+-...|+..
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 55555555555555555444444444444444443
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=1.5e-07 Score=72.84 Aligned_cols=111 Identities=10% Similarity=-0.075 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..+++...+ +.|+ .+..+...+...|++++|...|+..... +.+...|..+..++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445666654 3454 3556778889999999999999998887 447788999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 410 ERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.|.++..+..++.++...|++++|...+++..+....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998876543
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.8e-08 Score=55.59 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=26.1
Q ss_pred cCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 103 VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
.|+.||..+|+.+|++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888877763
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.3e-05 Score=70.00 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=127.0
Q ss_pred ChhHHHHHHhhCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 012879 124 FLKDSSKLFDEMPE------RNLVTWNVMITGLVKWGELEFARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNEALALFRK 196 (454)
Q Consensus 124 ~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (454)
++.++...-+.++. |+...+...+.+......-..+...+....+ .......-..-.+...|++++|+..+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~ 331 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQP 331 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHH
Confidence 44455555555553 3333444444444333332333333222222 2222333344455667888888888888
Q ss_pred HHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-C
Q 012879 197 MVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-N 275 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~ 275 (454)
+.+ ..|-|..........+.+.++.++|.+.++.+... .|........+.++|.+.|++.+|+++++......| |
T Consensus 332 L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 332 LIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 877 34444555556667778888888888888888886 565577777888888888888888888888877755 7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+..|..|.++|...|+..++..-..+ .+...|++++|...+....+.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 78888888888888887777655433 345567888888888777764
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=7.5e-06 Score=67.06 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=116.9
Q ss_pred HhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc
Q 012879 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMH 289 (454)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 289 (454)
..+-..+...|+-+....+....... .|.+......++....+.|++..|...|.+.....| |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 55666677777777777666665443 344666777788888888888888888888877644 777888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012879 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
|+.++|..-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++...... -.-|..+-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888888877752 224556677777777778888888888887764 233566667777778888888888887
Q ss_pred HhcCCCC
Q 012879 370 ALGIPSE 376 (454)
Q Consensus 370 ~~~~~~~ 376 (454)
...-...
T Consensus 225 ~~~e~~~ 231 (257)
T COG5010 225 AVQELLS 231 (257)
T ss_pred ccccccc
Confidence 7655443
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=1.2e-05 Score=77.54 Aligned_cols=398 Identities=12% Similarity=-0.021 Sum_probs=242.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCC-CCCc
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF-QSHV 109 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 109 (454)
...|..|..-|+...+...|.+.|+... +.+.. +......+...++...+++.|..+.-..-+... ..-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAF---eLDat------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAF---ELDAT------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCch------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 3578888888888888899999999998 66666 888999999999999999999998433322210 0111
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-hHHH--HHHHHHh
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV-SWTG--IIDGYTR 183 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~ 183 (454)
.-|....-.|...++..+|..-|+...+. |...|..+..+|.++|.+..|.+.|.+...-++. +|.. ..-.-+.
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 22333444577888999999999988763 5567888999999999999999999887653332 2322 2334567
Q ss_pred cCChHHHHHHHHHHHHcc-----CCCCChhhHHhHHHHHHccCchhHHHHHHHhh-------hhcCCCCchHHHHHHHHH
Q 012879 184 MNRSNEALALFRKMVACE-----YTEPSEITILAVLPAIWQNGDVKSCQLIHGYG-------EKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~l~~ 251 (454)
.|.+.+|+..+....... +..--..++..+...+...|=..++..+++.. ..... ..+...|..+.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~-~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL-QSDRLQWIVASD 721 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh-hhhHHHHHHHhH
Confidence 899999999888776521 22222334444444444344333333333332 22211 112222222222
Q ss_pred HHH-----------------------hcCCh---h---HHHHHHHHhhhcCCChhhHHHHHHHHHh----cC----ChhH
Q 012879 252 TYA-----------------------KCGCI---F---SASKLFEDISVERKNLVSWTSIISGFAM----HG----MGKE 294 (454)
Q Consensus 252 ~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~ 294 (454)
++. +.+.. + -+.+.+-.-.+.-.+..+|..++..|.+ .| +...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 111 11111 0 0111111111111133445555544433 22 3346
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
|+..+.+.++.. ..+..+|+.|--. ...|++.-+..-|-.-.. ..+....+|..+.-.+.+..+++-|...|....
T Consensus 802 Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 802 AIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 777777776642 3355566655544 666777777776666554 334456778888888899999999999999998
Q ss_pred CCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHH--HHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 375 SEIT-DVVVWRTLLGACSFHGNVEMGERVTRKI--LEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 375 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
...| +...|-.........|+.-++..+|..- ...+.+-. ..|..........|+.++-+...+++..
T Consensus 878 SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 878 SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 8844 5566765555566789999999999883 33333322 2334455566777887776666665543
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=4.4e-08 Score=54.06 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=19.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=1.2e-05 Score=79.15 Aligned_cols=218 Identities=11% Similarity=0.037 Sum_probs=136.7
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
+.+...+..|+..+...+++++|.++.+... ...+. ....|-.+...+.+.++.+.+.-+ .+... ++.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l---~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~ 95 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHL---KEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDS-FSQ 95 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhh-ccc
Confidence 4777899999999999999999999999776 44433 444444444466666665555544 22221 111
Q ss_pred C-------------------chhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 012879 108 H-------------------VYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 108 ~-------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
+ ...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|.+++.+
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 2 24555566666677777777777777664 3455666666666666 77777666654
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 166 MPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
. +..+...+++.++.+++.++... .+.+. +.-..+.+.+..+-....-..+
T Consensus 175 A-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~----------------d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 175 A-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDF----------------DFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred H-----------HHHHHhhhcchHHHHHHHHHHhc--Ccccc----------------hHHHHHHHHHHhhhccchhHHH
Confidence 3 23355556666677766666653 22222 2223333333332111223455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFA 287 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~ 287 (454)
+..+-..|...++++++..+++.+.+..| |.....-++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 66677788888899999999999888765 6667777777776
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.6e-05 Score=70.89 Aligned_cols=154 Identities=15% Similarity=0.090 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHh
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACS 322 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 322 (454)
......-.+...|++++|+..++.+....| |+..+....+.+.+.|+.++|.+.++++... .|+ ......+..++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333444456667888999999988888877 4455556667888899999999999988875 455 444556678888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
+.|++.+|+.+++.... ..+.|+..|..|.++|...|+..+|..... ..|...|+++.|+..
T Consensus 386 ~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A----------------E~~~~~G~~~~A~~~ 447 (484)
T COG4783 386 KGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA----------------EGYALAGRLEQAIIF 447 (484)
T ss_pred hcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH----------------HHHHhCCCHHHHHHH
Confidence 89999999999888876 456678888899999999988877765443 456678899999998
Q ss_pred HHHHHHhhcCCCCcHH
Q 012879 403 TRKILEMERGYGGDYV 418 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~ 418 (454)
+..+.+....+...|.
T Consensus 448 l~~A~~~~~~~~~~~a 463 (484)
T COG4783 448 LMRASQQVKLGFPDWA 463 (484)
T ss_pred HHHHHHhccCCcHHHH
Confidence 8888877655444433
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.00094 Score=64.34 Aligned_cols=388 Identities=14% Similarity=0.077 Sum_probs=220.3
Q ss_pred HccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHH--HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHH
Q 012879 42 SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRT--CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMY 119 (454)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (454)
...+++.+|+.....+. ...+. . .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|
T Consensus 20 ld~~qfkkal~~~~kll---kk~Pn-------~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y 87 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLL---KKHPN-------A-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVY 87 (932)
T ss_pred hhhHHHHHHHHHHHHHH---HHCCC-------c-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHH
Confidence 45678888988888887 44322 1 24444444 35788899999888877665533 778888899999
Q ss_pred HhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHH----HHHHHHhhCCCCCcchHHHHHHHHHhc-CC------
Q 012879 120 VSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELE----FARSLFEEMPCRNVVSWTGIIDGYTRM-NR------ 186 (454)
Q Consensus 120 ~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~------ 186 (454)
...|+.++|..++++..+ |+..-...+..+|++.+++. .|.++++...+ +...+-++++..... ..
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCccccc
Confidence 999999999999999886 55555556667777777654 46666665543 344444445444332 11
Q ss_pred ---hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 187 ---SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 187 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
..-|.+.++.+.+.+|..-+..-...-+..+...|++++|.+++..-......+.+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 12355566666665443333344444455666778888888888443333334445566667778888888888888
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHH----------------hcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHhcCCC
Q 012879 264 KLFEDISVERKNLVSWTSIISGFA----------------MHGMGKEAVENFGRMQKVGL-KPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~ 326 (454)
++-.++....+|. |.+.++.+. ..+..+...+...+....+. .|-...+- +..-+-.-|+
T Consensus 247 ~l~~~Ll~k~~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le-l~kr~~~~gd 323 (932)
T KOG2053|consen 247 ELSSRLLEKGNDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE-LDKRYKLIGD 323 (932)
T ss_pred HHHHHHHHhCCcc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH-HHHHhcccCC
Confidence 8888887776653 333222111 11122222222222222110 11111111 1111123344
Q ss_pred hHHHHHHHHHHHHhcCCCC-------------ChhHHHHHHHHHH------------------------hcCCh-----H
Q 012879 327 VEEGLNFFDKMVEECEVLP-------------DIKHYGCLIDMLG------------------------RAGRL-----E 364 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~------------------------~~g~~-----~ 364 (454)
.+++...|-+-. |.+| +......++..+. -.|.+ +
T Consensus 324 ~ee~~~~y~~kf---g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 324 SEEMLSYYFKKF---GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred hHHHHHHHHHHh---CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 444332222111 1111 0001111222221 12211 1
Q ss_pred HHHHH-------HhcCCCC----CCcH---------hHHHHHHHHHHcCCChh---HHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 365 QAEKT-------ALGIPSE----ITDV---------VVWRTLLGACSFHGNVE---MGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 365 ~A~~~-------~~~~~~~----~p~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
.-..+ |+.-.+. -|+. -+-+.|++.+.+.++.. +|+-+++..+...|.+...-..++
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 11111 1211111 1221 23467788888887754 677788888887777777777899
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 422 NILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
.+|.-.|-+..|.++++.+.-++|+-+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999999998877766544
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.7e-05 Score=62.64 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 322 (454)
.+|..++-+....|+.+.|...++++...-|.. .+-..-...+-..|++++|+++++.+.+.. +-|..++..=+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 345555556666777777777777766654422 222222223344677777777777777664 334455554444555
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC---CChhH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH---GNVEM 398 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~ 398 (454)
..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++.-..| ++..+..+...+... .+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 56666677777777766 4666777888888888888888888877777766534 444555555554433 35667
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 012879 399 GERVTRKILEMERGYGGD 416 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~ 416 (454)
|.+++.++++..|.+...
T Consensus 210 arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHHhChHhHHH
Confidence 777888887777754433
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=1.9e-05 Score=76.83 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=103.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
++..+-.|.......|.+++|..+++...+. .|-+......+...+.+.+++++|...+++.... .|.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 4667777777788888888888888888763 3344566677777778888888888888877776 46577777778
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 318 (454)
..++.+.|++++|.++|+++....| +..++..+..++...|+.++|...|++..+. ..|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888888888888888888776545 3567777777777888888888888877664 234445554444
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=7e-06 Score=73.79 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 145 VMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 145 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
.++..+...++++.|+++|+++.+.++.....+++.+...++..+|++++.+..+ ..+.+...+..-...+.+.++.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHH
Confidence 3444455566667777777766665555555666666666666666666666665 23344445555555566666666
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
.|..+.+++.+. .|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 252 lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 666666666665 454555666666666666666666666665543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=1.5e-06 Score=66.93 Aligned_cols=114 Identities=10% Similarity=-0.014 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 298 NFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 298 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+..++.+.|++++|..+++.....
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 33 3344556667778888999999998888764 2346677788888888889999999888887666
Q ss_pred -CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 377 -ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 377 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
+.+...+..+...+...|++++|...++++++..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 345677777888888889999999999988888887654
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=7.9e-06 Score=62.92 Aligned_cols=114 Identities=16% Similarity=0.057 Sum_probs=63.9
Q ss_pred HHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 012879 266 FEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVL 344 (454)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (454)
|+++....| +......+...+...|++++|.+.++.+.+.+ +.+...+..+...+...|++++|..+++...+. .+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p 82 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DP 82 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC
Confidence 344444434 33344455555666666666666666665543 224455555566666666666666666666542 23
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV 382 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 382 (454)
.+...+..+..+|...|++++|...|+......|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34455555566666666666666666666555444333
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=3.7e-06 Score=75.54 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH 393 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 393 (454)
..++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++.....| +...+......|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34445555556666666666666654 233 333455666666666666666666655433 444555555666677
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
++++.|+++.+++.+..|.+-.+|..|+.+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777777777777777777777777777776654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=3.8e-05 Score=59.75 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=58.4
Q ss_pred cCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChH
Q 012879 289 HGMGKEAVENFGRMQKVGLKP--NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 364 (454)
.++...+...++.+.+....- .....-.+...+...|++++|...|+.+... ...|. ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555542111 0112222334555566666666666666554 21111 112233455555666666
Q ss_pred HHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 365 QAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 365 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
+|+..++...........+....+.|...|++++|...|+++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666554433334445555566666666666666666553
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=5.9e-05 Score=61.52 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=138.0
Q ss_pred CChhHHHHHHHHhhhc------CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH-HHHHhcCCChH
Q 012879 257 GCIFSASKLFEDISVE------RKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV-LNACSHGGLVE 328 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~ 328 (454)
.+.++..+++.++... +++.. .|.-++-+....|+.+.|...++++...- |.+.-...+ ..-+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666655443 23333 34455566777899999999999988762 443322222 22244569999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
+|+++++.+... -+.|..++..=+...-..|+.-+|++-+.+..+. ..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999985 3556677777677777788888999888887777 6689999999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHhcC---CcCcHHHHHHHHhhccc
Q 012879 408 EMERGYGGDYVLMYNILAGVG---RFGDAERLRRVMDERNA 445 (454)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 445 (454)
-..|.++-.+..+++.+.-.| +.+-|.+++.+..+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999998888888888876554 55567777877766544
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.29 E-value=0.00069 Score=65.20 Aligned_cols=225 Identities=13% Similarity=0.078 Sum_probs=123.2
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH--HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLP--AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
...+++.+|++...+..+. .|+. .|...+. ...+.|+.++|..+++.....+. .|..+...+-.+|...|+.
T Consensus 20 ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhh
Confidence 3456667777766666653 2332 1222333 33566777777766666655532 2666777777777777777
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC----------ChHH
Q 012879 260 FSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG----------LVEE 329 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------~~~~ 329 (454)
++|..+|++..+..|+......+..+|.+.+++.+-.+.--+|-+. .+-+.+.|-+++....+.- -..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 7777777777776666555666666666666555444333333332 2334445555554443221 1123
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-CCCC--CCcHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG-IPSE--ITDVVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
|.+.++.+.+..|---+..-.......+...|.+++|.+++.. ..+. .-+...-+.-+..+...+++.+..++..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5555555555422111111112223344566778888777732 2222 113333344556666777788888888888
Q ss_pred HHhhcCC
Q 012879 407 LEMERGY 413 (454)
Q Consensus 407 ~~~~~~~ 413 (454)
++.++++
T Consensus 253 l~k~~Dd 259 (932)
T KOG2053|consen 253 LEKGNDD 259 (932)
T ss_pred HHhCCcc
Confidence 7777776
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=7.3e-05 Score=58.16 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 293 (454)
..+...|++++|...|+.+......+ ........|..++...|++++|+..++...........+......|...|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444444432111 00112223344444444444444444433222122233333344444444444
Q ss_pred HHHHHHH
Q 012879 294 EAVENFG 300 (454)
Q Consensus 294 ~A~~~~~ 300 (454)
+|...|+
T Consensus 136 ~A~~~y~ 142 (145)
T PF09976_consen 136 EARAAYQ 142 (145)
T ss_pred HHHHHHH
Confidence 4444443
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.22 E-value=6.7e-06 Score=62.69 Aligned_cols=91 Identities=7% Similarity=-0.090 Sum_probs=58.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
+..-+...|++++|..+|+-.....| +..-|-.|.-++-..|++++|+..+..+...+|+++.++..++.++...|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 34445566666666666666555423 34455566666666677777777777777777777767777777777777777
Q ss_pred cHHHHHHHHhhc
Q 012879 432 DAERLRRVMDER 443 (454)
Q Consensus 432 ~a~~~~~~~~~~ 443 (454)
.|.+.|+..+..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777766665543
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=3e-06 Score=47.48 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777788888888888888888777777776
No 144
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.20 E-value=0.004 Score=55.52 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHH-HHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW-RTLLGA 389 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~ 389 (454)
..|...+++..+....+.|..+|-++.+. + ..+++.++++++..++ .|+...|..+|+--....||...| ...+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45667777777888899999999999988 6 6788999999998665 688889999999877776776665 445666
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCC--CCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 390 CSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
+...++-+.|..+|+..++.-..+ .+.|..++.--...|+...+..+-+.|.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778899999999999877654443 567888888888899998888777777654
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=1.5e-05 Score=59.81 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLL 387 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 387 (454)
++..+...+.+.|++++|.+.|..+....+-.+ ....+..+..++.+.|++++|...++.+....|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556666777777777777665411111 1234455666666677777777766666554232 34455566
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
.++...|+.++|...++++++..|.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666777777777776666665543
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.4e-06 Score=46.91 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP 309 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 309 (454)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.8e-05 Score=65.89 Aligned_cols=157 Identities=11% Similarity=0.005 Sum_probs=107.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH--HhcCCChHHHHHHHHHHHHhcCCCCChhHHH----------
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA--CSHGGLVEEGLNFFDKMVEECEVLPDIKHYG---------- 351 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 351 (454)
.++.-.|++++|...--..++.. + ...+...+++ +-..++.+.+...|++... +.|+-..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 45566788888877776665532 1 1223333332 3345677788888877763 344432211
Q ss_pred ---HHHHHHHhcCChHHHHHHHhcCCCC-----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 352 ---CLIDMLGRAGRLEQAEKTALGIPSE-----ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 352 ---~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
.=.+-..+.|++.+|.+.|.+.+.. .|+...|........+.|+.++|+.-.+++++.++.....+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1122345778888999988888777 33455666667777888999999999999988888888888888888
Q ss_pred HHhcCCcCcHHHHHHHHhhcccc
Q 012879 424 LAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
+.-.++|++|.+-+++..+....
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 88889999998888887665444
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=8.1e-06 Score=58.24 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+..+...+...|++++|...++++....| +...+..+...+...|++++|.+.+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34455556666777777777766655422 33555666666666777777777777777766666666667777777777
Q ss_pred CcCcHHHHHHHHhhc
Q 012879 429 RFGDAERLRRVMDER 443 (454)
Q Consensus 429 ~~~~a~~~~~~~~~~ 443 (454)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777666543
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=9e-07 Score=61.54 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
.|+++.|+.+++.+.+.....++...+-.+..+|.+.|++++|.+++++ ... ..+......+..+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4667777777777766522122334444466677777777777777766 222 22233444446666677777777776
Q ss_pred HHH
Q 012879 403 TRK 405 (454)
Q Consensus 403 ~~~ 405 (454)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.0063 Score=55.58 Aligned_cols=412 Identities=8% Similarity=0.034 Sum_probs=247.1
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc-cC
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT-LS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~ 88 (454)
+.+.++-.++++...-+ -++..|...|+.-.+..+++....+|.+-. ..- . +...|..-++--.+ .+
T Consensus 34 ~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCL---vkv----L---nlDLW~lYl~YVR~~~~ 101 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCL---VKV----L---NLDLWKLYLSYVRETKG 101 (656)
T ss_pred CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHH----h---hHhHHHHHHHHHHHHcc
Confidence 34555666666655444 778899999999999999999999999986 222 2 55566666664332 23
Q ss_pred Ccch----HhHHHHHHH-HcCCCCC-chhHHHHHHHH---------HhCCChhHHHHHHhhCCC-C---------CchhH
Q 012879 89 HPNL----GTQLHAVIS-KVGFQSH-VYVNTALVNMY---------VSLGFLKDSSKLFDEMPE-R---------NLVTW 143 (454)
Q Consensus 89 ~~~~----a~~~~~~~~-~~~~~~~-~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~-~---------~~~~~ 143 (454)
+... ..+.|+... +.|+.+- ...|+..+..+ ....+++...+++.++.. | |-..|
T Consensus 102 ~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~f 181 (656)
T KOG1914|consen 102 KLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAF 181 (656)
T ss_pred CcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 3332 233333333 3454332 33566655543 333467778888888764 2 22333
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHhhCCC---------CC---c---------chHHHHHHHHHhcC------C--h
Q 012879 144 NVMITGLV-------KWGELEFARSLFEEMPC---------RN---V---------VSWTGIIDGYTRMN------R--S 187 (454)
Q Consensus 144 ~~ll~~~~-------~~~~~~~A~~~~~~~~~---------~~---~---------~~~~~l~~~~~~~~------~--~ 187 (454)
..-|+... +...+..|.++.+++.. |. . ..|..+|.-=...+ . -
T Consensus 182 E~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~ 261 (656)
T KOG1914|consen 182 EQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT 261 (656)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH
Confidence 33232221 33455666666665531 11 0 11333333221111 1 1
Q ss_pred HHHHHHHHHHHHccCCCCChhhHH-----hHHHHHHccCc-------hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 188 NEALALFRKMVACEYTEPSEITIL-----AVLPAIWQNGD-------VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
....-.+++....-+..|+..... ...+.+...|+ .+++..+++.....-... +..+|..+.+.--.
T Consensus 262 ~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 262 RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 223344454444324444443211 11122333444 345556666655532211 44444444433222
Q ss_pred cC---ChhHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHH
Q 012879 256 CG---CIFSASKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 256 ~g---~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 329 (454)
.- ..+.....++++.... .-..+|...+..-.+..-...|..+|.+..+.+..+ .....++++..+|. ++.+-
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~ 419 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKET 419 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhH
Confidence 22 2556666677666541 233468888888888888999999999999988777 77788888888875 78899
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCc--HhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITD--VVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
|.++|+.=.+.+| .++.--...++-+...|+-..|..+|++.... .|+ ...|..++.--...|+...+.++-++
T Consensus 420 AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 420 AFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999998877533 34445567788888999999999999998876 333 47899999999999999999999988
Q ss_pred HHHhhcC----CCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 406 ILEMERG----YGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 406 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
....-|. ....-..+.+-|.-.+.+.--..-+
T Consensus 498 ~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 498 RFTAFPADQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred HHHhcchhhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 8776662 1233345555555555554433333
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.14 E-value=4.3e-05 Score=57.25 Aligned_cols=92 Identities=11% Similarity=-0.024 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNIL 424 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 424 (454)
.++..+.+.|++++|.+.|+.+....|+ ...+..+..++.+.|+++.|...++++....|.+ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444455555555555444433222 1233334444555555555555555555444442 22344444555
Q ss_pred HhcCCcCcHHHHHHHHhhc
Q 012879 425 AGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~ 443 (454)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555554443
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=9.9e-06 Score=73.15 Aligned_cols=109 Identities=8% Similarity=-0.041 Sum_probs=90.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
-...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++....| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999875 234577888889999999999999999999988744 57788899999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
+++|+..|+++++..|.+......+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887766665554444
No 153
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.04 E-value=3.6e-05 Score=67.13 Aligned_cols=266 Identities=11% Similarity=-0.028 Sum_probs=163.6
Q ss_pred hHHHHHH--HHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHH--H--cCCC
Q 012879 33 LFNTLLH--FYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVIS--K--VGFQ 106 (454)
Q Consensus 33 ~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~ 106 (454)
.+..-+. -+|+.|+.+.-+.+|+... +.|.. .-+.-+.+|..|.++|--.+++++|+++...=+ . .|-+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~---qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAAL---QVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHH---Hhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 4444443 5899999999999999999 66655 100123456777778888889999988765421 1 1111
Q ss_pred -CCchhHHHHHHHHHhCCChhHHHHHHhhCCC---------CCchhHHHHHHHHHhcCC--------------------H
Q 012879 107 -SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---------RNLVTWNVMITGLVKWGE--------------------L 156 (454)
Q Consensus 107 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~ll~~~~~~~~--------------------~ 156 (454)
-...+-..|.+.+-..|.+++|...-.+-.. .....+-.+...|...|+ +
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 1122333455566667777777765433221 122334445555554333 3
Q ss_pred HHHHHHHhhCCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHHH----HccCCC-CChhhHHhHHHHHHccCc
Q 012879 157 EFARSLFEEMPC---------RNVVSWTGIIDGYTRMNRSNEALALFRKMV----ACEYTE-PSEITILAVLPAIWQNGD 222 (454)
Q Consensus 157 ~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~ 222 (454)
+.|.++|.+-.+ .-...|..|...|.-.|+++.|+..-+.-. +- |.. .....+..+..++.-.|+
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcc
Confidence 444444433211 122456667777777788888876654322 22 222 234567788888888888
Q ss_pred hhHHHHHHHhhh----hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-------CCChhhHHHHHHHHHhcCC
Q 012879 223 VKSCQLIHGYGE----KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-------RKNLVSWTSIISGFAMHGM 291 (454)
Q Consensus 223 ~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~ 291 (454)
++.|.+.|+... +.|-.......+.+|.+.|.-...+++|+.++.+-... .-....+-.|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 888887776543 44444445667778888888888888888888764433 1244567778888888888
Q ss_pred hhHHHHHHHHHHh
Q 012879 292 GKEAVENFGRMQK 304 (454)
Q Consensus 292 ~~~A~~~~~~m~~ 304 (454)
.++|+.+.+.-++
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665443
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1.1e-05 Score=45.10 Aligned_cols=34 Identities=38% Similarity=0.676 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS 206 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (454)
.+||.++.+|++.|++++|.++|++|.+. |+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLER-GIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC
Confidence 36888888999999999999999988887 77776
No 155
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0012 Score=58.11 Aligned_cols=54 Identities=4% Similarity=-0.103 Sum_probs=34.4
Q ss_pred HHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 82 RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
..+.+..++..|+..+...++.. +-+..-|..-+..+...|++++|.--.+.-.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 33445556777777888777765 3345556666666777777777765554443
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.02 E-value=8.3e-06 Score=54.19 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=56.9
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC-CcCcHHHHHHHHhhcc
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG-RFGDAERLRRVMDERN 444 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 444 (454)
+..+|..+...+...|++++|+..|+++++.+|.++..+..++.++.+.| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888888999999999999999999999988888999999999998 7899999988877643
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.7e-06 Score=45.00 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCC
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 66 (454)
+.+||.++++|++.|+++.|.++|+.|. +.|++
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~---~~gv~ 33 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMK---EQGVK 33 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCC
Confidence 3689999999999999999999999999 88887
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=5.3e-05 Score=63.53 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=62.4
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 399 (454)
+.+.+++++|+..|.+.++. .+-|...|..-..+|.+.|.++.|++-.+......| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34556666666666666642 222344455556666666666666666666665533 245666666666666666666
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
++.|+++++.+|.+......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 666666666666666444444444444333
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00052 Score=52.56 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
+......+...+...|++++|.++|+-+....| +..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 444555666667777888888888887777666 555666777777777888888888887777653 356666677777
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
+...|+.+.|.+-|+.....++-.|
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccCh
Confidence 7788888888888887776644333
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0012 Score=56.12 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SW---TSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
++...-.....+...|++++|.+.|+++....|+.. .- -.++.++.+.+++++|...+++..+..+......+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333344455556677888888888888877766432 21 34556777888888888888887775332222333333
Q ss_pred HHHHhc--C---------------CC---hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 012879 318 LNACSH--G---------------GL---VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI 377 (454)
Q Consensus 318 ~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 377 (454)
+.+.+. . .| ..+|...|+.+++.+ |+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHH-
Confidence 333321 1 11 234445555555531 221 2223333333222221
Q ss_pred CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 378 TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 378 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
-..---.+..-|.+.|.+..|+.-++.+++.-|+.+ .+...+..+|...|..++|..+...+.
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001111345667888999999999999998888743 456678888999999999988776653
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00013 Score=51.73 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
..+...+...|++++|...+++..+. .+.+...+..+...+...++++.|.+.++...+. .|.+...+..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 33444555555555555555555442 1222233444444444444444444444444443 1223334444444444
Q ss_pred hcCChhHHHHHHHHh
Q 012879 255 KCGCIFSASKLFEDI 269 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~ 269 (454)
..|+++.|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 444444444444443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00011 Score=66.47 Aligned_cols=103 Identities=13% Similarity=-0.061 Sum_probs=83.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
....+...|++++|++.|+++++... -+...|..+..++...|++++|+..++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998643 35677888888999999999999999999874 2335778888899999999
Q ss_pred ChHHHHHHHhcCCCCCCcHhHHHHHH
Q 012879 362 RLEQAEKTALGIPSEITDVVVWRTLL 387 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~~~~~~~l~ 387 (454)
++++|...|++.....|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999888766554444443
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=3.1e-05 Score=53.73 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=41.5
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|+++.|+.+++++.+.....++...+..+..++.+.|++++|..+++. .+. .+.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666666411111333444455666666666666666655 222 1223333344456666666666666
Q ss_pred HHHHH
Q 012879 264 KLFED 268 (454)
Q Consensus 264 ~~~~~ 268 (454)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65553
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.95 E-value=0.0016 Score=57.06 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=79.8
Q ss_pred chhHHHHHHHhhhh----cCCCCchHHHHHHHHHHHHhc-CChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhc
Q 012879 222 DVKSCQLIHGYGEK----RGFTAFDIRVLNCLIDTYAKC-GCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMH 289 (454)
Q Consensus 222 ~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~ 289 (454)
+++.|...+++..+ .|....-...+..+...|... |+++.|++.|++.... ... ...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 55555555554433 121111233455566666666 7777777777776554 111 12445566677777
Q ss_pred CChhHHHHHHHHHHhCCCC-----CcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHh-cCCCCC--hhHHHHHHHHHHh-
Q 012879 290 GMGKEAVENFGRMQKVGLK-----PNRV-TFLSVLNACSHGGLVEEGLNFFDKMVEE-CEVLPD--IKHYGCLIDMLGR- 359 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~- 359 (454)
|++++|.++|++....... .+.. .|...+-++...||+..|.+.+++.... +++..+ ......|+.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 7888888887776653221 1221 2222333445567777777777777643 123222 2344555666553
Q ss_pred -cCChHHHHHHHhcCCCC
Q 012879 360 -AGRLEQAEKTALGIPSE 376 (454)
Q Consensus 360 -~g~~~~A~~~~~~~~~~ 376 (454)
...+++|+.-|+.+...
T Consensus 249 D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp -CCCHHHHCHHHTTSS--
T ss_pred CHHHHHHHHHHHcccCcc
Confidence 24466666777766654
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.95 E-value=0.00091 Score=58.58 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
...|+.....|-..|++++|.+.|.+.-......-. + ..-...|.....++.+. ++++|...++.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~-~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~----------- 99 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--K-FEAAKAYEEAANCYKKG-DPDEAIECYEK----------- 99 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---H-HHHHHHHHHHHHHHHHT-THHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--H-HHHHHHHHHHHHHHHhh-CHHHHHHHHHH-----------
Confidence 345666666666777777777777766533222111 1 00112222222222222 44444444433
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-----CC----cchHHHHHHH
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW-GELEFARSLFEEMPC-----RN----VVSWTGIIDG 180 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 180 (454)
.+..|...|+++.|-+.+.. +...|-.. |+++.|++.|++..+ .. ..++..+...
T Consensus 100 ----A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 ----AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp ----HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 33445555555555444432 23344444 555555555544331 11 1344556667
Q ss_pred HHhcCChHHHHHHHHHHHHccCCC-----CChh-hHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 181 YTRMNRSNEALALFRKMVACEYTE-----PSEI-TILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
+.+.|++++|+++|++.... ... .+.. .|...+-++...||...|.+.++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777777776553 111 1111 122233344555666666666666554
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.0023 Score=60.05 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHH-cCCCCC--------chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISK-VGFQSH--------VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTW 143 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 143 (454)
.+..|..+.......-.++-|+..|-.... .|++.- ...-.+ ..-+--|++++|++++-++.++|.
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhhh---
Confidence 677788887776666667777766654432 122100 000111 112224788888888888776654
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC--C---cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH
Q 012879 144 NVMITGLVKWGELEFARSLFEEMPCR--N---VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIW 218 (454)
Q Consensus 144 ~~ll~~~~~~~~~~~A~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (454)
.|..+.+.|++-...++++.-... | ...|+.+...+.....|++|.+.|...... ...+.++.
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly 833 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLY 833 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHH
Confidence 456677888888888888664431 1 257888888888888888888888765332 23455555
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
+..+++.-+.+...+ |.+....-.+.+++.+.|.-++|.+.|-+-.. |. ..+..|...+++.+|.++
T Consensus 834 ~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 834 RLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC--cH-----HHHHHHHHHHHHHHHHHH
Confidence 555555544444332 33555666677777777777777776655443 21 234455566666666666
Q ss_pred HHH
Q 012879 299 FGR 301 (454)
Q Consensus 299 ~~~ 301 (454)
-++
T Consensus 901 aq~ 903 (1189)
T KOG2041|consen 901 AQR 903 (1189)
T ss_pred HHh
Confidence 544
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00031 Score=61.22 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
.+|-.++...-+.+..+.|..+|.+..+.+ +........+++..+ ..++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 356667777777777788888888877543 223333333333322 345666688888888774 4456667777778
Q ss_pred HHHhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 356 MLGRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.+.+.|+.+.|..+|++.....|.. ..|...+.--.+.|+.+.+..+.+++.+.-+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 7888888888888888877763333 37777777777888888888888888776554
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.00068 Score=64.16 Aligned_cols=140 Identities=11% Similarity=-0.004 Sum_probs=98.4
Q ss_pred CChhhHHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcC--------CChHHHHHHHHHHHH
Q 012879 274 KNLVSWTSIISGFAM--H---GMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHG--------GLVEEGLNFFDKMVE 339 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 339 (454)
.+...|...+.+... . ++...|..+|++..+. .|+ ...+..+..++... .+...+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 477888888877543 2 2367899999999886 454 33444433333211 122334444444333
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 340 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
......+...|..+.-.....|++++|...++++....|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2123345577777766677789999999999999988888889999999999999999999999999999998774
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.91 E-value=0.013 Score=51.33 Aligned_cols=249 Identities=15% Similarity=0.067 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHhhCCC-CCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHH
Q 012879 153 WGELEFARSLFEEMPC-RNVV--SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 153 ~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
.|+++.|.+-|+.|.. |... -...|.-.--+.|+.+.|.++-++.-. .-+--.......+...+..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 4555555555555553 1111 111122222344555555555554433 1122234455555555556666666555
Q ss_pred HHhhhhcCCCCchHHH--HHHHHHHHH---hcCChhHHHHHHHHhhhcCCChhhHHH-HHHHHHhcCChhHHHHHHHHHH
Q 012879 230 HGYGEKRGFTAFDIRV--LNCLIDTYA---KCGCIFSASKLFEDISVERKNLVSWTS-IISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~ 303 (454)
.+.-.......++..- -..|+.+-. -..+...|...-.+..+..||...-.. -..++.+.|+..++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 5554443322222211 111111111 112344555555555555566543332 3466777888888888888877
Q ss_pred hCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhH
Q 012879 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV 382 (454)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 382 (454)
+....|+. .. +....+.| +.+..-+++..+...++|+ ......+.++-...|++..|..--+......|....
T Consensus 291 K~ePHP~i--a~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 291 KAEPHPDI--AL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCChHH--HH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 76544442 21 11233444 3444455555444345554 445556667777778887777666665555677777
Q ss_pred HHHHHHHHH-cCCChhHHHHHHHHHHHh
Q 012879 383 WRTLLGACS-FHGNVEMGERVTRKILEM 409 (454)
Q Consensus 383 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 409 (454)
|..|.+.-. ..||-.++...+.+.+..
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 777766554 448888888888777764
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.91 E-value=1.1e-05 Score=52.88 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=30.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 387 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
...+...|++++|++.|+++++..|.++..+..++.++.+.|++++|...++++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555443
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.90 E-value=0.0047 Score=48.24 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
|..++...|++.+|...|++...--..-|....-.+.++....+++..|...++.+.
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 334444444444444444443332222233333334444444444444444444443
No 172
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.89 E-value=0.017 Score=51.77 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
.+|...+..-.+....+.|..+|.+..+.| +.++...+++++..++ .|+...|..+|+.=... ++.+..--...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356677777778888999999999999988 6788889999998876 48889999999987653 3333333356677
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 356 MLGRAGRLEQAEKTALGIPSE-ITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
-+.+.++-+.|..+|+....+ ..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 788999999999999976665 222 568999999889999999999888888877665
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.88 E-value=0.015 Score=51.09 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=188.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhCC---CCCcchHHHHHH--HHHhcCChHHHHHHHHHHHHccCCCCChhh--HHhH
Q 012879 143 WNVMITGLV--KWGELEFARSLFEEMP---CRNVVSWTGIID--GYTRMNRSNEALALFRKMVACEYTEPSEIT--ILAV 213 (454)
Q Consensus 143 ~~~ll~~~~--~~~~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l 213 (454)
|..|-.+++ -.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.... ..-|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHH
Confidence 444444443 4567777776665543 244444444444 344569999999999999863 33222 2233
Q ss_pred HHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCChhh--HHHHHHHHH-
Q 012879 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKNLVS--WTSIISGFA- 287 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~--~~~l~~~~~- 287 (454)
.-...+.|+.+.|..+-+..... -|.-+......+...+..|+++.|+++++.-... .++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33345789999999988888775 5657788999999999999999999999977654 344321 222222211
Q ss_pred --hcCChhHHHHHHHHHHhCCCCCcHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 288 --MHGMGKEAVENFGRMQKVGLKPNRVTF-LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 288 --~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
-.-+...|...-.+..+ +.|+-..- .....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcH
Confidence 12345666666555554 45554432 23347788999999999999999865 4555544333 345666643
Q ss_pred HH----HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc-CCcCcHHHHHHH
Q 012879 365 QA----EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV-GRFGDAERLRRV 439 (454)
Q Consensus 365 ~A----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 439 (454)
.. .+-++.|+.+ +..+.-.+..+....|++..|..-.+.+....|.. ..|..|+++-... |+-.++...+-+
T Consensus 312 ~dRlkRa~~L~slk~n--naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPN--NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCcc--chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence 32 1234455544 67777888889999999999998888888776653 3677788877655 999999998887
Q ss_pred Hhhc
Q 012879 440 MDER 443 (454)
Q Consensus 440 ~~~~ 443 (454)
-++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7654
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00039 Score=55.93 Aligned_cols=134 Identities=8% Similarity=-0.026 Sum_probs=89.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.....|..+...+...|++++|+..|++.. ..... ++ .....+..+..++...|++++|...+++..+.. +.+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEAL---KLEED--PN-DRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhc--cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 455578888888999999999999999987 43333 20 024678888899999999999999999988864 335
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
...+..+..++...|+...+..-++.. ...+++|.+++++....++..|..++..+...|+
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 666777777888777754443322211 1124555666665555455445555555544443
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00046 Score=55.49 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566677777778888888888887776433222 346666777777788888888888777753 1223455556
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCc
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRF 430 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (454)
+..++...|+...+..-++... ..+++|.++++++.+.+|.+ +..++.-+...|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6666666666555443222111 12577788888887776655 55555555555543
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=3.9e-05 Score=50.17 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=50.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
+...+.+.|++++|.+.|+++....| +...+..+..++...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45677888999999999998888855 56788888899999999999999999999888875
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.83 E-value=0.0022 Score=50.04 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=110.5
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc---HhHH
Q 012879 307 LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVW 383 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~ 383 (454)
+.|+...-..|..+..+.|+..+|...|++.... -+..|......+.++....+++..|...++++-+.+|. +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4678887788999999999999999999999885 56778888999999999999999999999987776332 3445
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
-.+...+...|++..|+..|+.++..-|+. .........+.+.|+..++..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 567788999999999999999999877753 34556677888999888887666655543
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.8e-05 Score=42.01 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00019 Score=60.58 Aligned_cols=106 Identities=12% Similarity=0.035 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC---CChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFH---GNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
-|...|-.|...|...|+.+.|...|.+.... .+++..+..+..++... .+..++..+|++++..+|.+......+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34555666666666666666666666655554 33444444444444322 233456666666666666666666666
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcccccCCC
Q 012879 421 YNILAGVGRFGDAERLRRVMDERNAFKVPG 450 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 450 (454)
+..+...|++.+|...++.|.+.....+|.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 666666666666666666666655544443
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.021 Score=50.51 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 392 (454)
+.+..+.-+...|+...|.++-.+. ++ |+...|...+.+++..++|++-.++... .+ .+.-|...+.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK--sPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KK--SPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC--CCCChHHHHHHHHH
Confidence 3344444455556655555543333 33 5666666667777777777666665443 22 34666666677777
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
.|+..+|..+..++ .+..-+..|.++|.+.+|.+..
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 77766666666651 1144555666666666665543
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.0008 Score=58.68 Aligned_cols=128 Identities=18% Similarity=0.100 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc-cCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ-NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
+|..+++..-+.+..+.|..+|.+.++. ...+...|......-.. .++.+.|..+|+...+. .+.+...+...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 3455555555555556666666655542 12223333333333222 34444455555555554 3435555555556
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 252 TYAKCGCIFSASKLFEDISVERKNLV----SWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.+.+.|+.+.|..+|++....-+... .|...+..=.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665555433222 455555555555555555555555554
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.4e-05 Score=41.68 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCC
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHS 64 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 64 (454)
++||.++++|++.|++++|.++|++|. +.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~---~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR---ERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh---HCc
Confidence 489999999999999999999999998 554
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00059 Score=48.44 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGL-KPNRVTFLSVLNACSHGG--------LVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|... +++|+..+|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 45555566888888888888888888 788888888887766532 244567788888877 88888888888
Q ss_pred HHHHHHh
Q 012879 353 LIDMLGR 359 (454)
Q Consensus 353 l~~~~~~ 359 (454)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877654
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00088 Score=53.65 Aligned_cols=62 Identities=8% Similarity=-0.157 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
..+...+...|++++|...|+.......-.+ ...++..+..+|...|++++|++.+++....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333444444555555555554443200000 1123444444555555555555555544433
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0023 Score=47.19 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
..++-..|+.++|+.+|++.... |.... ...+..+.+.+...|++++|..+++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555554 32222 12333344444444444444444444443
No 186
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.027 Score=49.82 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=50.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
.+.-+...|+...|.++-.+. + .|+..-|..-+.+++..++|++-.++... +-.+.-|..++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 344444555555555443332 1 24555555555566666665554443221 112344555555555666
Q ss_pred ChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 362 RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
+..+|..+..++. +..-+..|.+.|++.+|.+..-
T Consensus 252 ~~~eA~~yI~k~~--------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKIP--------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhCC--------hHHHHHHHHHCCCHHHHHHHHH
Confidence 6666655555522 1333445555555555554433
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=2.3e-05 Score=51.83 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=36.6
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
...|++++|++.|+++++..|.+...+..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3456677777777777777777666666777777777777777777766665443
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00049 Score=62.48 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVER----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 318 (454)
......+++......+++.+..++.+....+ .-..|..+++..|.+.|..+.++.++..=...|+-||..+++.++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 3333444444444444455555544444431 112233455555555555555555555555555555555555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCCCChhHH
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECEVLPDIKHY 350 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (454)
+.+.+.|++..|.++...|..+ ....+..++
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~ 176 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQ 176 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHh-hccCCchHH
Confidence 5555555555555555555544 333333333
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00032 Score=63.69 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=80.8
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-+......+++.+....+.+.+..++.+.+ ...-.... -..|.+++++.|...|..+.+..++..=...|+-||
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R---~s~~~~~~---~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFR---HSPNCSYL---LPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHH---cCcccccc---cCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 345566667777777777777777777775 22111001 234556888888888888888888888778888888
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhc
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKW 153 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~ 153 (454)
..++|.||+.+.+.|++..|.++...|.. .+..|+...+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777653 3445555555555544
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.00018 Score=57.71 Aligned_cols=112 Identities=11% Similarity=-0.121 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHH
Q 012879 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
..+...+..+.+..+..-....+..+...+...|++++|+..|++.....|+ ..++..+...+...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444444322122233556677788888999999999999988655222 357888999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHH-------hcCCcCcHHHHHHH
Q 012879 404 RKILEMERGYGGDYVLMYNILA-------GVGRFGDAERLRRV 439 (454)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 439 (454)
+++++..|.....+..++.++. +.|++++|...+++
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999998887777778888887 77887766555543
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00038 Score=61.00 Aligned_cols=257 Identities=12% Similarity=0.025 Sum_probs=164.3
Q ss_pred HHhccCCcchHhHHHHHHHHcCCCCCc----hhHHHHHHHHHhCCChhHHHHHHhhCC-------C--CCchhHHHHHHH
Q 012879 83 TCATLSHPNLGTQLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDEMP-------E--RNLVTWNVMITG 149 (454)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~--~~~~~~~~ll~~ 149 (454)
-+++.|+......+|+..++.| .-|. .+|..|.++|.-.+++++|+++...=. . -...+...+-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4789999999999999999988 3343 457777888888899999998754321 0 122233344444
Q ss_pred HHhcCCHHHHHHHHhhCCC---------CCcchHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 012879 150 LVKWGELEFARSLFEEMPC---------RNVVSWTGIIDGYTRMNR--------------------SNEALALFRKMV-- 198 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~-- 198 (454)
+--.|.+++|.-...+-.. .....+..+...|...|+ ++.|.++|.+-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666554332211 122334445555554443 234444444322
Q ss_pred --HccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh----cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 199 --ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK----RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 199 --~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
+.+.--.....|..|...|.-.|+++.|+...+.-.. -|........+..+.+++.-.|+++.|.+.|+.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 2211122345677778888888999999877665433 3323334567888999999999999999999875443
Q ss_pred -----CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 273 -----RK--NLVSWTSIISGFAMHGMGKEAVENFGRMQK----VG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 273 -----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.. ...+.-.|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|..+.+...+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 12 333555677777777888999888766332 11 1123457778899999999999998887766553
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=0.00025 Score=46.82 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=33.2
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSW 279 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (454)
..|++++|.++++.+... .|.+..+...++.+|.+.|++++|.++++++....|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345555555555555554 34455566666666666666666666666666655553333
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.0013 Score=54.45 Aligned_cols=169 Identities=12% Similarity=0.044 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh-
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS- 322 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~- 322 (454)
.....+...|++++|.+.|+.+....|+. ...-.++.++.+.|+++.|...+++..+.-+.-....+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34444555666666666666666553321 2334455566666666666666666555311111111111111111
Q ss_pred ------------cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 323 ------------HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 323 ------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
..+...+|...|+.+.+. |=......+|...+..+... -..---.+..-|
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~--la~~e~~ia~~Y 151 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR--LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 112233444455555443 22223333343333332221 011112245667
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 434 (454)
.+.|.+..|..-++.+++.-|+.. .....++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888888888888888877743 35567788888888776443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.0097 Score=50.61 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=84.0
Q ss_pred HHccCchhHHHHHHHhhhhcCCCCchHHHH---HHHHHHHHhcCChhHHHHHHHHhhhcCCCh--hhHHHHHHHHHh--c
Q 012879 217 IWQNGDVKSCQLIHGYGEKRGFTAFDIRVL---NCLIDTYAKCGCIFSASKLFEDISVERKNL--VSWTSIISGFAM--H 289 (454)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~--~ 289 (454)
+...|+++.|.+.|+.+... .|.++... -.++.+|.+.++++.|...|++..+..|+. ..+...+.+.+. .
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 34455555555555555553 23233222 445666777777777777777776664422 122222222211 1
Q ss_pred C---------------C---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH
Q 012879 290 G---------------M---GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG 351 (454)
Q Consensus 290 g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 351 (454)
+ + ..+|...|+++++. |=...-..+|...+..+... .. ..--
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la-~~e~ 179 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LA-KYEL 179 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HH-HHHH
Confidence 0 1 12344444444443 22223334444444443321 00 1111
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
.+..-|.+.|.+..|..-++.+.+..|+ ......++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455567777777777666666655332 345556667777777777776665544
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.003 Score=59.94 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
++..+..+.-.+...|++++|...+++.....|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444555555555555544444444444444555555555555555554444
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00011 Score=49.38 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=39.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..|.+.+++++|.++++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4556666777777777777777777666666677777777777777777766665544
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0026 Score=52.47 Aligned_cols=135 Identities=7% Similarity=-0.062 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHH-----HH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHY-----GC 352 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 352 (454)
+-+.++..+.-.|.+.-....+.+.++...+.++.....+.+.-.+.||.+.|..+|++..+. .-+.+.... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445666777778888889999999988776777888888999999999999999999988766 222333333 33
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
....|.-.+++.+|...+.++... ..++...|.-.-+....|+..+|++.++.+++..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 344566788999999999988877 3455555555555666789999999999999988873
No 198
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.044 Score=49.27 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=49.7
Q ss_pred hHHHHHHHH--HHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 381 VVWRTLLGA--CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 381 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..-|.|.++ +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|.+++..+.-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 344555554 4578999999988888888888 777899999999999999999999987654
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.00026 Score=60.60 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLL 387 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 387 (454)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+..+|...|++++|...|+.+....|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777776421111 1234555666677777777777777766655332 33444455
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
..+...|+.++|..+++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566667777777777777776666543
No 200
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0011 Score=55.94 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=79.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
.-+.+.+++.+|+..|.+.++ -.+-|.+.|..-..+|.+.|.++.|.+-.+..+.. .|....+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 445677888888888888887 45666777888888888888888888888877775 56577788888888888888
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHHH
Q 012879 259 IFSASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
+++|++.|++.....|+-.+|-.=+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888878666554433
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0081 Score=49.73 Aligned_cols=165 Identities=13% Similarity=-0.012 Sum_probs=104.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhh
Q 012879 140 LVTWNVMITGLVKWGELEFARSLFEEMPCR--N--------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209 (454)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (454)
...|+.+.+.+.-..-+++-+..++.-..| . ...-+.++.++.-.+.+.-...++.+.++. ..+.++..
T Consensus 136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L 214 (366)
T KOG2796|consen 136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQL 214 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHH
Confidence 334555555555554455555555443322 1 123455666677777888888888888875 55666777
Q ss_pred HHhHHHHHHccCchhHHHHHHHhhhhcCCCC----chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHH
Q 012879 210 ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA----FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIIS 284 (454)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~ 284 (454)
...+.+...+.||.+.|...|+...+....- ....+.......|.-.+++..|...|.++....| |+..-|.-.-
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 7778888888888888888888666542211 1222333334456667778888888877777644 5555565555
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 012879 285 GFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+..-.|+..+|++.++.|.+.
T Consensus 295 cllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 556677888888888888775
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.52 E-value=0.001 Score=47.21 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=66.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCC-CCCCCCCChhhHHHHHHHHhccC--------CcchHhHHHHHHHHcCC
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSH-SPLPPLFDSFTYSFLIRTCATLS--------HPNLGTQLHAVISKVGF 105 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~ 105 (454)
..-|..+...+++...-.+|+.++ +.|+ - | +..+|+.++.+.+++. +.-..+.+|+.|+..++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk---RN~i~l--P---sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK---RNGITL--P---SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH---hcCCCC--C---cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 355666777799999999999999 8888 6 8 9999999999987655 23456889999999999
Q ss_pred CCCchhHHHHHHHHHh
Q 012879 106 QSHVYVNTALVNMYVS 121 (454)
Q Consensus 106 ~~~~~~~~~l~~~~~~ 121 (454)
+|+..+|+.++..+.+
T Consensus 101 KP~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KPNDETYNIVLGSLLK 116 (120)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999987754
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.50 E-value=0.0042 Score=45.86 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHh
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGR 359 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 359 (454)
..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....++-.+ +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444556666666666666666554433 22344444555666666666666666655311100 11112222334555
Q ss_pred cCChHHHHHHHhc
Q 012879 360 AGRLEQAEKTALG 372 (454)
Q Consensus 360 ~g~~~~A~~~~~~ 372 (454)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666655543
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00077 Score=44.58 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=28.1
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC-ChhHHHHHHHHhhh
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG-CIFSASKLFEDISV 271 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 271 (454)
+|..+...+...|++++|...|++..+. .|.++.++..+..+|...| ++++|++.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444444444444444444444443 2334444555555555554 35555555444433
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.47 E-value=0.018 Score=53.97 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHh----------
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVV---------- 381 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------- 381 (454)
.+...+...+-+...+..|-++|..|-.. ..+++.....+++++|..+-++..+..||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 34444444444555566666666666322 3455666667777777777666665533332
Q ss_pred -HHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 382 -VWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 382 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
-|.-.-++|.+.|+..+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223456677777777777777653
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.46 E-value=0.0021 Score=51.84 Aligned_cols=99 Identities=18% Similarity=0.363 Sum_probs=69.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC--------------
Q 012879 264 KLFEDISVERKNLVSWTSIISGFAM-----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG-------------- 324 (454)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 324 (454)
..|+.......+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 3444443333566667666666654 356666677777788888888888888888776542
Q ss_pred --CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 325 --GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 325 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
.+-+-|++++++|... |+-||..++..+++.|++.+..
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 1345688888888776 8888888888888888776653
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.048 Score=51.71 Aligned_cols=252 Identities=11% Similarity=0.022 Sum_probs=133.7
Q ss_pred hhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHH----------HHHHHhcCChHHHHHH
Q 012879 125 LKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-RNVVSWTGI----------IDGYTRMNRSNEALAL 193 (454)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~~~~~~a~~~ 193 (454)
+++|.++.+. .|.+..|..+.......-.++.|+..|-+... +.+.....| ...-.--|++++|.++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4444444443 25566777777766666667777766665543 222111111 1111224788888888
Q ss_pred HHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC
Q 012879 194 FRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 273 (454)
|-+|-+. ...+....+.||+-.+.++++.--.......-...++.+.+.+.....+++|.+.|..-..
T Consensus 757 yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 757 YLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 8777553 2345556677777777666654322211111234677777777777777777777765433
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
....+.++.+..++++-+.+.+.+ +-+....-.+..++...|.-++|.+.|-+. +. | ..-
T Consensus 825 -----~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~-p-----kaA 884 (1189)
T KOG2041|consen 825 -----TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR----SL-P-----KAA 884 (1189)
T ss_pred -----hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc----cC-c-----HHH
Confidence 123455555555555544444332 234444555666666666666665554332 21 2 223
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCcHhHHH--------------HHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSEITDVVVWR--------------TLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+..|...+++.+|.++-+...- |.+.+.- --|..+.+.|+.-+|.+++.+|.+....
T Consensus 885 v~tCv~LnQW~~avelaq~~~l--~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQL--PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 4556666666666666654432 2222211 1233445566666666666666655444
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0019 Score=49.77 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=40.4
Q ss_pred hcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 359 RAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
..|++++|..+|.-+... .-+..-|..|..++-..+++++|+..+..+...++.++.++...+.++...|+.+.|...|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 445555555555443332 1233333444444444555555555555555555555555555555555555555555555
Q ss_pred HHHhh
Q 012879 438 RVMDE 442 (454)
Q Consensus 438 ~~~~~ 442 (454)
+...+
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 44443
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0094 Score=50.69 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=55.4
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMH---GMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
.|.|...|-.|..+|...|+++.|..-|.+..+..| ++..+..+..++... ....++..+|+++.... +-|..+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 344666666666666666666666666666655533 445555555444332 13345666666666542 2234444
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
..|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455556666666666666666665
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0023 Score=54.78 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=40.4
Q ss_pred HhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHHHhcCCc
Q 012879 358 GRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNILAGVGRF 430 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 430 (454)
.+.|++++|...|+......|+. ..+.-+..+|...|++++|...|+++++..|++ +..+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33455555555555544443332 234444455555555555555555555544442 22333344445555555
Q ss_pred CcHHHHHHHHhh
Q 012879 431 GDAERLRRVMDE 442 (454)
Q Consensus 431 ~~a~~~~~~~~~ 442 (454)
++|.++++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.00053 Score=46.00 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 355 DMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
..|.+.+++++|.++++.+....| ++..+.....++...|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 457778888888888888877733 55677777888888888888888888888888865543
No 212
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0095 Score=48.14 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCChhhHHhHHHHHHc-----cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhh
Q 012879 204 EPSEITILAVLPAIWQ-----NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVS 278 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (454)
..+..+|..++..+.+ .|..+-....+..|.+-|+.. |..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~k-DL~~Y~~LLDvFPK-g~fv-p~n~fQ~~--------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEK-DLEVYKALLDVFPK-GKFV-PRNFFQAE--------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcc-cHHHHHHHHHhCCC-CCcc-cccHHHHH---------
Confidence 4556666666666643 356666677777777777655 78888888777643 2221 11111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC
Q 012879 279 WTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 279 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 326 (454)
...| -.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 22456799999999999999999999999999976654
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.27 E-value=0.13 Score=46.35 Aligned_cols=383 Identities=13% Similarity=0.076 Sum_probs=191.0
Q ss_pred CCCCCchhHHHHHHHHh----hhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHH
Q 012879 7 SQTPNNITTQIHSHLLT----TNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIR 82 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 82 (454)
..++.+.+..||..+-+ ...++...+.-+.++++|.. ++.+.....+....+ ..|.. .|-.+..
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~--~~~~s---------~~l~LF~ 85 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQ--QFGKS---------AYLPLFK 85 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHH--hcCCc---------hHHHHHH
Confidence 44555555555555443 33334556677788888876 455655555555552 23322 2444444
Q ss_pred H--HhccCCcchHhHHHHHHHHc--CCC------------CCchhHHHHHHHHHhCCChhHHHHHHhhCCC--------C
Q 012879 83 T--CATLSHPNLGTQLHAVISKV--GFQ------------SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--------R 138 (454)
Q Consensus 83 ~--~~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~ 138 (454)
+ +-+.+++++|.+.+..-.+. +.. +|...-+..++++...|+++++..+++++.+ =
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 3 34677888888888776553 222 2223335677788889999999999888863 2
Q ss_pred CchhHHHHHHHHHhcC--------C-------HHHHHHHHhhCCCCCc----------chHHHHHHHHHhc--CChHHHH
Q 012879 139 NLVTWNVMITGLVKWG--------E-------LEFARSLFEEMPCRNV----------VSWTGIIDGYTRM--NRSNEAL 191 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~--------~-------~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~--~~~~~a~ 191 (454)
+..+|+.++-.+.++= . ++.+.-+.++|...+. .....++....-. .+..--.
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 5667776544443321 1 1122222222221111 1111111111110 1112222
Q ss_pred HHHHHHHHccCCCCChh-hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc---hHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 192 ALFRKMVACEYTEPSEI-TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF---DIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
++++.-.+. -+.|+.. ....+...+.. +.+++..+.+.+....+.+. -..++..++....+.++...|.+.+.
T Consensus 246 q~l~~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 246 QILENWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222222222 3334432 22223333332 44444444444443321111 12344555555556666666655555
Q ss_pred HhhhcCCChh---------------------hH------------------------HHHH---HHHHhcCC-hhHHHHH
Q 012879 268 DISVERKNLV---------------------SW------------------------TSII---SGFAMHGM-GKEAVEN 298 (454)
Q Consensus 268 ~~~~~~~~~~---------------------~~------------------------~~l~---~~~~~~g~-~~~A~~~ 298 (454)
-+.-..|+.. .+ ..|+ .-+-+.|. -++|+++
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 4433222111 00 1111 11223343 6677777
Q ss_pred HHHHHhCCCCCcHHHHHHH----HHHHhc---CCChHHHHHHHHHHHHhcCCCCCh----hHHHHHHHH--HHhcCChHH
Q 012879 299 FGRMQKVGLKPNRVTFLSV----LNACSH---GGLVEEGLNFFDKMVEECEVLPDI----KHYGCLIDM--LGRAGRLEQ 365 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~ 365 (454)
++...+.. .-|...-+.+ =.+|.+ ...+.+-.++-+-+.+. |++|-. ..-|.|.++ +...|++.+
T Consensus 403 Lk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 403 LKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 77766631 1122222211 122221 22334444444444444 777643 333444333 446788888
Q ss_pred HHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 366 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
+.-.-.-.....|++.+|..++-++....++++|..++.++
T Consensus 481 c~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 481 CYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 87655555555789999999999999999999999999865
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.024 Score=46.86 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=39.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHc
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKV 103 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 103 (454)
...+...|++++|++.|+.+......+.. .....-.++.++-+.|+++.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556778888888888888732222211 3455667777788888888888888887764
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.24 E-value=0.0058 Score=45.63 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (454)
....|+..+..+++.+|+..|++..|.++.+.+.+.++++.+..+|..|++-..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346788899999999999999999999999999998888888888888876444
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.24 E-value=0.045 Score=45.63 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCC-C---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERK-N---LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 321 (454)
+-.-+..-.+.|++++|.+.|+.+....| + ..+--.++.++.+.++++.|+..+++....-......-|...|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33344455667888888888888877655 2 2344445566777888888888888876643222223333334333
Q ss_pred hc-------CCChH---HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHH--HHHHHH
Q 012879 322 SH-------GGLVE---EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW--RTLLGA 389 (454)
Q Consensus 322 ~~-------~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~l~~~ 389 (454)
+. ..|.. .|..-|+.++.. + |+.. -..+|..-...+. |.... ..+.+-
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~r--y-PnS~-------------Ya~dA~~~i~~~~----d~LA~~Em~Iary 176 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQR--Y-PNSR-------------YAPDAKARIVKLN----DALAGHEMAIARY 176 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHH--C-CCCc-------------chhhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 31 12222 333334444432 1 1110 0001111000000 00000 123455
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
|.+.|.+..|..-++++++.-+... +.+..+..+|.+.|-.++|...-+-+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 6677777777777777777655532 34555667777777777776665544
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.0095 Score=46.36 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVTF 314 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 314 (454)
+...++..+...|++++|.++.+.+....| +...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455566667777777777777777777666 566777777777777777777777776542 4677766543
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0024 Score=56.31 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.++..+.-+|.+.+++.+|++..++.+.. ++|+...-.-..+|...|+++.|+..|+++++..|.|..+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888999999999999999998887 67888888899999999999999999999999999998888888887777
Q ss_pred cCCcCcH-HHHHHHHhhc
Q 012879 427 VGRFGDA-ERLRRVMDER 443 (454)
Q Consensus 427 ~g~~~~a-~~~~~~~~~~ 443 (454)
.....+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665554 6777777653
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.11 E-value=0.0007 Score=39.96 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
.++..+..+|...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999888877654
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.09 E-value=0.036 Score=49.59 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcC----C-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVER----K-NLVSWTSIISGFAM---HGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.+...++-+|....+++..+++++.+...+ + ....-....-++.+ .|+.++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455556777777777777777766641 0 11111223334445 677777777777755544455666666
Q ss_pred HHHHHHh----c-----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---hc------C
Q 012879 316 SVLNACS----H-----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE----QAEKTA---LG------I 373 (454)
Q Consensus 316 ~l~~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~------~ 373 (454)
.+.+.|- . ....++|+..|.+.-+ +.|+...--.++..+...|... +..++- .. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 6555442 1 1235566666665443 3344322212222222333211 112211 11 1
Q ss_pred CCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 374 PSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 374 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.+...+--.+.+++.++.-.|++++|.+..++|....|+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 111345556677888889999999999999999987543
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.06 E-value=0.0018 Score=58.50 Aligned_cols=101 Identities=11% Similarity=-0.051 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
.+...+..+..+|.+.|++++|+..|++.....|+. .+|..+..+|...|+.++|++.++++++.. ...|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels---n~~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY---NLKFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---chhHHHH
Confidence 356788899999999999999999999988876664 358999999999999999999999999862 1122211
Q ss_pred HH--HHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 421 YN--ILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 421 ~~--~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
.. .+....+.++..++++...+.|....
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 11 12233455577888888888776443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.00 E-value=0.00086 Score=45.64 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
+..+..++...|++++|++.+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.97 E-value=0.0043 Score=48.28 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh-----cccccCC
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE-----RNAFKVP 449 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 449 (454)
.+...++..+...|++++|+.++++++..+|.+...|..++.+|.+.|+..+|.+.++++.. .|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777888999999999999999999999999999999999999999999999988754 4665544
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.48 Score=46.31 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
...+-+.+.|++++|...|-+-. . -+. | ..++.-|........--.+++.+.+.|+. +...-..|
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI---~-~le--~--------s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlL 437 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETI---G-FLE--P--------SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLL 437 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHc---c-cCC--h--------HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHH
Confidence 34445667899999998887664 1 112 2 25566677777777778888888888854 55556779
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCC-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERN-LVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (454)
+.+|.+.++.++-.++.+...+.. .......+..+-+.+-.++|.-+-..... +... +--.+-..|++++|++.+
T Consensus 438 LncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi 513 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYI 513 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHH
Confidence 999999999998888887766321 12355666666677777777666555443 2222 222344567788888877
Q ss_pred HHH
Q 012879 195 RKM 197 (454)
Q Consensus 195 ~~~ 197 (454)
..+
T Consensus 514 ~sl 516 (933)
T KOG2114|consen 514 SSL 516 (933)
T ss_pred hcC
Confidence 655
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.46 Score=45.84 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
..+.+--+.-+...|+..+|.++-.+++ -||-..|..-+.+++..+++++-+++-+..+ .+.-|.-.+.+|
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----sPIGy~PFVe~c 754 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----SPIGYLPFVEAC 754 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----CCCCchhHHHHH
Confidence 3344445555566677777777666553 2677777777778888888887777766654 255677777888
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 888888888777765321 1156777777777777766543
No 226
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.84 E-value=0.57 Score=46.16 Aligned_cols=95 Identities=8% Similarity=-0.040 Sum_probs=47.0
Q ss_pred ChhHHHHHHhhCCC-CCch-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 012879 124 FLKDSSKLFDEMPE-RNLV-TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE 201 (454)
Q Consensus 124 ~~~~a~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (454)
..++....+++-.. |-.. .-...+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34555555544432 2221 1223344555677777777633222 2344444556666777777776766666654431
Q ss_pred CCCCChhhHHhHHHHHHccC
Q 012879 202 YTEPSEITILAVLPAIWQNG 221 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~ 221 (454)
. ..+.....++..+.+.|
T Consensus 160 ~--~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 160 K--SLPNACDKLFSVWQQSG 177 (644)
T ss_pred C--CCChHHHHHHHHHHHcC
Confidence 2 22334444444444333
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.005 Score=51.59 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=26.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
|..++...|++++|..+|..+.+..|.+ +..+..++.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444455555555554444444442 22344444444455555555555544444
No 228
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.80 E-value=0.0006 Score=37.43 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHH
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (454)
++++++..|.++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999886
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.0046 Score=45.13 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=47.0
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH----hHHHHHHHHHHcCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV----VVWRTLLGACSFHG 394 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g 394 (454)
+....|+.+.|++.|...... .+-....||.-..++.-.|+.++|++-+++..+. .+.. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 344556666666666655532 2233455666666666666666666655555444 1111 22333333455556
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 012879 395 NVEMGERVTRKILEMERG 412 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~ 412 (454)
+.+.|..-|+.+-+.|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 666666666665555443
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.78 E-value=0.0035 Score=42.62 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
.+++.+...|...|++++|++.|++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.75 E-value=0.049 Score=42.20 Aligned_cols=89 Identities=8% Similarity=-0.046 Sum_probs=46.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (454)
..-+...|++++|..+|.-+.-..| +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3334455666666666665555433 444444555555555666666666655443321 12333334445555566666
Q ss_pred HHHHHHHHHHH
Q 012879 329 EGLNFFDKMVE 339 (454)
Q Consensus 329 ~a~~~~~~~~~ 339 (454)
.|...|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666665554
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.74 E-value=0.08 Score=49.97 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcH-----HHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKV-GLKPNR-----VTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
..++....-.|+-+.+++.+.+..+. ++.-.. ..|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 33444444456666666666554442 122111 123333333322 45677888888888764 355555
Q ss_pred HHHH-HHHHHhcCChHHHHHHHhcCCCC-----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH-HHHH
Q 012879 350 YGCL-IDMLGRAGRLEQAEKTALGIPSE-----ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV-LMYN 422 (454)
Q Consensus 350 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~ 422 (454)
|... .+.+...|++++|++.|++.... ......+--+...+...+++++|.+.|.++.+...-....|. ..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4433 45566788899999888876543 223345556677788888999999999998886555444544 3466
Q ss_pred HHHhcCCc-------CcHHHHHHHHhhc
Q 012879 423 ILAGVGRF-------GDAERLRRVMDER 443 (454)
Q Consensus 423 ~~~~~g~~-------~~a~~~~~~~~~~ 443 (454)
++...|+. ++|.++++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 66777888 7888888777654
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.74 E-value=0.28 Score=41.28 Aligned_cols=225 Identities=16% Similarity=0.038 Sum_probs=140.8
Q ss_pred CChHHHHHHHHHHHHccCCC-CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 185 NRSNEALALFRKMVACEYTE-PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
+....+...+...... ... .....+......+...++...+...+.........+.....+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALEL-LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4444555555555442 111 12455566666666677777666666665542112335666667777777777788888
Q ss_pred HHHHHhhhcCCCh-hhHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 264 KLFEDISVERKNL-VSWTSIIS-GFAMHGMGKEAVENFGRMQKVGL--KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
+.+.......++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8888777654432 22222333 67788888888888888755221 12233333444445667888888888888876
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 340 ECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 340 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
. ... ....+..+...+...++++.|...+.......|+ ...+..+...+...+..+.+...+.+..+..+.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 223 3566777777888888888888888887776444 344455555555667788888888888877665
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.65 E-value=0.2 Score=47.35 Aligned_cols=127 Identities=14% Similarity=0.019 Sum_probs=58.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCChhh-----HHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPSEIT-----ILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRVLN 247 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (454)
++....-.|+-+.+++.+.+..+.+++.-...+ |...+..++. ..+.+.|.++++.+.+. .|.+....-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 344444456666666666655543222222211 2222222221 33445566666666554 342333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVER-----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.-.+.+...|++++|++.|++..... .....+--+.-.+.-.+++++|.+.|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 33445555666666666666543321 11222333334445555666666666666553
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.60 E-value=0.35 Score=40.67 Aligned_cols=223 Identities=17% Similarity=0.035 Sum_probs=161.2
Q ss_pred cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh--c-CCChhhHHHHHHHHHhcCChhHHH
Q 012879 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV--E-RKNLVSWTSIISGFAMHGMGKEAV 296 (454)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~ 296 (454)
.+....+...+......................+...+++..+...+..... . ......+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555422111356778888889999999999999988875 2 345566777778888888999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHH-HHhcCCChHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 297 ENFGRMQKVGLKPNRVTFLSVLN-ACSHGGLVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
..+.........+ ......... .+...|+++.+...+...... .- ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988754443 122222223 688899999999999998542 21 123344444555577889999999999998
Q ss_pred CCCCCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 374 PSEITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 374 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
....++ ...+..+...+...++++.|...+.......+.....+......+...|..+++...+.+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 887444 67788888899999999999999999999888745556666666667777888888887776543
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.60 E-value=0.037 Score=41.83 Aligned_cols=88 Identities=14% Similarity=0.001 Sum_probs=57.0
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC----cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc-HHHHHHH--HHhcC
Q 012879 356 MLGRAGRLEQAEKTALGIPSEIT----DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD-YVLMYNI--LAGVG 428 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g 428 (454)
...+.|++++|.+.|+.+....| ...+--.++.+|.+.|++++|...+++.+++.|.++.+ |.....+ +.+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 34567778888887777777633 23455667788888888888888888888888885532 3333333 33333
Q ss_pred C---------------cCcHHHHHHHHhhc
Q 012879 429 R---------------FGDAERLRRVMDER 443 (454)
Q Consensus 429 ~---------------~~~a~~~~~~~~~~ 443 (454)
. ...|...|+++++.
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 2 44566666666554
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.14 Score=44.31 Aligned_cols=149 Identities=8% Similarity=-0.046 Sum_probs=69.8
Q ss_pred cCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHHHHHHHHHhcCCChHHHH
Q 012879 256 CGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV---GLKPNRVTFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 331 (454)
.|+..+|-..++++.+..| |...++-.=.+|...|+...-...+++.... +++..+..-..+.-++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4455555555555555544 5555555555566666665555555555432 11111112222223344556666666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C-Cc---HhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-I-TD---VVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
+.-++..+- -+.|.-.-.+....+.-.|+..++.++..+-.+. . .+ ...|-...-.+...+.++.|+++|++-
T Consensus 196 k~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 196 KQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 655555432 1123333344555555556666666655554433 1 00 112222233344445666666666543
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.18 Score=41.68 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc------CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE------RKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVG---LKPNRVTF 314 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 314 (454)
.+......+.+...+.+|-..|.+-... -++. ..|-..|-.+...+++..|...++.--+.+ -.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444555666666776666655543322 1221 234445555666677888888877643321 12345677
Q ss_pred HHHHHHHhcCCChHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFF 334 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~ 334 (454)
..|+.+| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777776 456766665543
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.54 E-value=0.72 Score=43.45 Aligned_cols=381 Identities=11% Similarity=0.063 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChh-hHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSF-TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
..|+.+|.---...+.+.+..++..+. ..- | -.. -|.....-=.+.|..+.+.++|+..+. |++.+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL---~ky----P---l~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~Svd 114 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFL---SKY----P---LCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVD 114 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHH---hhC----c---cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHH
Confidence 345555544444444455666666665 211 3 333 233344444567778888888888766 4666777
Q ss_pred hHHHHHHHHH-hCCChhHHHHHHhhCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHH-
Q 012879 111 VNTALVNMYV-SLGFLKDSSKLFDEMPE------RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYT- 182 (454)
Q Consensus 111 ~~~~l~~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~- 182 (454)
.|......+. ..|+.+.....|+.... .+..-|...|..-..++++.....+++++.+-....++..-.-|.
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 7776666554 44677777777777654 345567777777778888888888888877533332222222221
Q ss_pred --hc------CChHHHHHHHHHHHH-------------------ccCCCCChhh--HHhHHH-------HHHccCchhHH
Q 012879 183 --RM------NRSNEALALFRKMVA-------------------CEYTEPSEIT--ILAVLP-------AIWQNGDVKSC 226 (454)
Q Consensus 183 --~~------~~~~~a~~~~~~~~~-------------------~~~~~~~~~~--~~~l~~-------~~~~~~~~~~a 226 (454)
+. ...+++.++-..... .-+.+.+..+ .+.+.. .+-..-.....
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 11 112222222211110 0011111111 111111 11111122222
Q ss_pred HHHHHhhhhcC------CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CCChhhHHHHHHHHHhcCChhHHHHHH
Q 012879 227 QLIHGYGEKRG------FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENF 299 (454)
Q Consensus 227 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 299 (454)
...++.-.++. ..+.+...|...+..-.+.|+.+.+.-+|++..-. ..-...|-..+.-....|+.+.|..++
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 33333333321 22234567888888889999999999999987762 112234444555455558999888888
Q ss_pred HHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHhcC
Q 012879 300 GRMQKVGL--KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI-KHYGCLIDMLGRAGRLEQAE---KTALGI 373 (454)
Q Consensus 300 ~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~ 373 (454)
....+-.+ .|....+.+.+ +-..|+++.|..+++.+... . |+. ..-..-+....+.|..+.+. +++...
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 77666433 33333343333 34468999999999999886 3 553 22233345566788888887 555554
Q ss_pred CCCCCcHhHHHHHHH-----HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 374 PSEITDVVVWRTLLG-----ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 374 ~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
....-+......+.- .+.-.++.+.|..++.++.+..|.+...|..++......+
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 443222222222222 2334679999999999999999998888888888776665
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.54 E-value=0.088 Score=38.80 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=71.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.-.|..++..++..+.... .+..-+|.+|--....-+-+-..+.++.+-+-+.+.+- .-...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457777777777776653 23444555553333333434444455544332111111 111234444444433
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
+.......+..+..+|+-+.-.++..++...+..+++....++.+|.+.|+..++.+++++.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23344555666777777777777777776655556667777888888888888888888887777764
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.54 E-value=0.18 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=12.4
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 012879 284 SGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.+|.+.|+-.+|..+++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 345556666666666666544
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.54 E-value=0.25 Score=44.38 Aligned_cols=166 Identities=10% Similarity=-0.029 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhcCCCCChhHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVG---LKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMVEECEVLPDIKHYG 351 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 351 (454)
+...++-+|....+++..+++++.+.... +.-+...--...-++.+ .|+.++|.+++..+... .-.+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33455567888999999999999998741 11122222233445566 89999999999996555 6667888888
Q ss_pred HHHHHHHh---------cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCC-hh---HHHHHH----HHHHHhhcC--
Q 012879 352 CLIDMLGR---------AGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN-VE---MGERVT----RKILEMERG-- 412 (454)
Q Consensus 352 ~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~----~~~~~~~~~-- 412 (454)
.+.+.|-. ....++|.+.|.+.-...|+..+=-.++..+...|. .+ +..++- ..+.+.+..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 87776642 234788999999877764543322122222222332 22 222222 111122211
Q ss_pred --CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 413 --YGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 413 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+-..+.+++.+..-.|+.+.|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33345578888999999999999999998763
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0072 Score=53.42 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=61.0
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 380 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..++..+.-+|.+.+++..|++..+++++.+|.|....+.-+.++...|.++.|+..|+++.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 446778888999999999999999999999999999999999999999999999999999988654
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.43 E-value=0.036 Score=41.39 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCC-------CCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHH
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHS-------HSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISK 102 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 102 (454)
|..++..+|-++++.|+.+....+.+..-.+...+ ....|..|+..+..+++.+++..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45688899999999999999999998765322222 11112234888888888888888888888888888765
Q ss_pred -cCCCCCchhHHHHHHHHHhC
Q 012879 103 -VGFQSHVYVNTALVNMYVSL 122 (454)
Q Consensus 103 -~~~~~~~~~~~~l~~~~~~~ 122 (454)
.+++.+..+|..|++-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 56666777888887755443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.34 Score=41.42 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=67.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
...|++.+|..+|....+.... +...-..+..+|...|+.+.|..++..+-.. --.........-+..+.+.....+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCH
Confidence 3445555555555555443211 2233344455555555555555555554321 0001111111222333333333333
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcH
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 433 (454)
..+-.+....+-|...-..+...+...|+.+.|.+.+-.++..+.. +...-..++..+.-.|.-+.+
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 3333333333124444555566666666666666666666655444 455555666666666644443
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.44 Score=39.45 Aligned_cols=205 Identities=15% Similarity=0.063 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.|..-..+|-...++++|...+.+..+ +...+..-| .. ....+.|.-+.+++.+. +.-...++.-...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslf-hA------AKayEqaamLake~~kl---sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLF-HA------AKAYEQAAMLAKELSKL---SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHH-HH------HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 345556677788888888887777765 222222111 11 22345555666666553 2245567777888
Q ss_pred HHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCcHHHHHHHHHHHhcCCCh
Q 012879 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV---G--LKPNRVTFLSVLNACSHGGLV 327 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~--~~p~~~~~~~l~~~~~~~~~~ 327 (454)
|..+|..+.|-..+++..+ ...+-++++|+++|++.... + .+--...+...-+.+.+...+
T Consensus 101 Y~E~GspdtAAmaleKAak--------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK--------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 8888888888777776655 23345566777776664431 1 011122344455566677777
Q ss_pred HHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CCcHhHHHHHHHHHHcCCChhH
Q 012879 328 EEGLNFFDKMVEE---CEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-----ITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 328 ~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
++|-..+..-... ..--++ -..|-..|-.|.-..++..|...++.-.+. ..+..+...|+.+| ..||.+.
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 7776655443211 011122 233455555667778999999999984444 33567888888887 5678877
Q ss_pred HHHHHH
Q 012879 399 GERVTR 404 (454)
Q Consensus 399 A~~~~~ 404 (454)
+..++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 766554
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.11 Score=47.35 Aligned_cols=67 Identities=15% Similarity=0.001 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.|.+...++.+..+|.+.|++++|+..|++..+..|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666666665543 23666666666666666666666666653
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.38 E-value=0.61 Score=40.81 Aligned_cols=17 Identities=6% Similarity=-0.267 Sum_probs=9.7
Q ss_pred HHcCCChhHHHHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKI 406 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~ 406 (454)
+.+.++++.|.+.++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666543
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.34 E-value=0.33 Score=37.33 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHH
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEF 158 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 158 (454)
.++..+...+.+.....+++.+...+ +.+...++.++..|++.+ .++....+.. ..+......+++.|.+.+-+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444444444444444444443 234444444554444432 2222233321 1223333344444555555555
Q ss_pred HHHHHhhC
Q 012879 159 ARSLFEEM 166 (454)
Q Consensus 159 A~~~~~~~ 166 (454)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55555444
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.30 E-value=0.29 Score=45.59 Aligned_cols=157 Identities=14% Similarity=0.032 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHHHh--hCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 148 TGLVKWGELEFARSLFE--EMP-CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 148 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
....-.++++++.++.+ ++. .-.....+.+++.+.+.|.++.|+++..+-.. -.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 33445667777544443 111 11234467777777777888877776544322 233445667777
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.|.++.+.. .++..|..|.+...+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+....
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 776665432 2566788888888888888888888887766 66777777777877777777766665
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
.|- ++....++.-.|+.++..+++.+.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 542 333444444557777777666554
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.062 Score=45.24 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---hhhHHhHHHHHHccCchhHHHHHHHhhhhcC-CCCchHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---EITILAVLPAIWQNGDVKSCQLIHGYGEKRG-FTAFDIRVLNCL 249 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l 249 (454)
|+.-+. +.+.|++..|...|...++. .|-+ ...+-.|..++...|+++.|..+|..+.+.- -.|.-+..+..|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444433 34556677777777777763 2222 2334455555566666665555555555431 111223455555
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
..+..+.|+.++|..+|+++.+.-|+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 55555666666666666665555443
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.25 E-value=0.34 Score=45.17 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHhccCCcchHhHHHHHHH-HcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHH
Q 012879 81 IRTCATLSHPNLGTQLHAVIS-KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFA 159 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 159 (454)
.+...-.++++.+.++.+.-. -..++ ..-.+.++..+-+.|..+.|+++-..- ..-.....+.|+++.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHH
Confidence 344455677777666654111 11122 344777888888888888888765431 3345556788888888
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCC
Q 012879 160 RSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT 239 (454)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (454)
.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+.....|.
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 88777665 566888888888888888888888877654 45556666677777777777666665542
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 269 (454)
++....++.-.|+.++..+++.+.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334444455556776666666554
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.0083 Score=47.48 Aligned_cols=102 Identities=15% Similarity=0.024 Sum_probs=62.8
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
-+.+.|++++|..-|......+.-.+. ...|..-..++.+.+.++.|++-..+.++..|+ ......-..+|-+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 466778888888888887765222221 223344445666777777777777777666332 2333444556777777
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
+++|++-++++++.+|....+....+
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 77777777777777776544433333
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.15 E-value=0.098 Score=45.70 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC----chHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA----FDIRV 245 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 245 (454)
.|..+.+++-+.-++.+++.+-..-...+|..|. .....++..++.-.+.++++.+.|+...+..... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555555544443333331 1223334444555555555555555544421111 12345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc----C-CChh-hHH-----HHHHHHHhcCChhHHHHHHHHHHh----CCCCCc
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE----R-KNLV-SWT-----SIISGFAMHGMGKEAVENFGRMQK----VGLKPN 310 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~-~~~-----~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~ 310 (454)
+..|...|.+..++++|.-+..+..+. . .|.. -|. .|.-++...|..-.|.+.-++..+ .|-.|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666666677767766666555544332 1 1111 122 233345556666666666555432 333322
Q ss_pred -HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 311 -RVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 311 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1233455566667777777766666544
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.056 Score=49.25 Aligned_cols=160 Identities=11% Similarity=0.044 Sum_probs=104.5
Q ss_pred hhH--HHHHHHHHhc-----CChhHHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhc---------CCChHHHHHHHHHHH
Q 012879 277 VSW--TSIISGFAMH-----GMGKEAVENFGRMQK-VGLKPN-RVTFLSVLNACSH---------GGLVEEGLNFFDKMV 338 (454)
Q Consensus 277 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 338 (454)
..| ...+.+.... ...+.|..+|.+... +.+.|+ ...|..+..++.. ..+..+|.+..+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 245678888998872 234554 3455555544432 123445666666666
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 339 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
+. -+.|......+..+..-.|+++.|...|++.....|| ..+|......+.-.|+.++|.+.++++++..|.-...-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 53 2346677777777778888899999999998888665 45677777777788999999999999999988744332
Q ss_pred --HHHHHHHHhcCCcCcHHHHHHH
Q 012879 418 --VLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 418 --~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
...++.|+.. ..++|++++-+
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhh
Confidence 2334455544 46667777644
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.99 E-value=0.15 Score=44.57 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----C-CcH------h
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVL----PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE----I-TDV------V 381 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-p~~------~ 381 (454)
+..++...+.++++.+.|+...+--.-. ....++..|...|.+..++++|.-+..+..+. . .|. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3344444555555555555544320101 11234555555555555655555444333222 0 111 1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCc----HHHHHHHHHhcCCcCcHHHHHHH
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGD----YVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~----~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
+...+..++...|..-+|.+..+++.+.... |..+ ...++++|...|+.+.|..-+++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1223334555556666666655555444322 2222 22455566666666555554443
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.93 E-value=0.72 Score=37.52 Aligned_cols=180 Identities=9% Similarity=-0.042 Sum_probs=98.8
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+..|.-=|.+... +.|.-+.+||-|.-.+...|+++.|.+.|+...+..|.- .+...-.-++.-.|++.-|.+-+..
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 3333333444433 356677888888888889999999999999888865521 1211112233446788888776666
Q ss_pred HHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHH-HHHHHHhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHhcCCCC--
Q 012879 302 MQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNF-FDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKTALGIPSE-- 376 (454)
Q Consensus 302 m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-- 376 (454)
.-+.. -.|=...|--+. ...-++.+|..- .++..+ .|..-|.. ++..|...=..+.+.+-...-...
T Consensus 159 fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 55432 122222222222 223456666543 333332 23333432 333333222222222222222211
Q ss_pred ---CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 377 ---ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 377 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..-..||-.|.+-+...|+.++|..+|+-++....-
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 112357788888899999999999999988875543
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.59 Score=36.50 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=53.6
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHH---HHH--HHHhcCChh
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTS---IIS--GFAMHGMGK 293 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---l~~--~~~~~g~~~ 293 (454)
+.++.++|..-|..+.+.|.-.................|+...|...|+++....|.+....- |=. .+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344445555555555554433222222233333444555555555555555544222222211 111 223455555
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
......+.+-..+-+--...-..|.-+-.+.|++..|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555544443332222222333434444555666666655555543
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.92 E-value=1.4 Score=40.76 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 375 (454)
.+..++-+.|+.++|++.++++.+.+.......+...|++++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344455566666666666666665422222334455666666666666666666666543
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.97 Score=38.77 Aligned_cols=142 Identities=10% Similarity=0.073 Sum_probs=67.2
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh--hhHHHHHHHHHhcCChh
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL--VSWTSIISGFAMHGMGK 293 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 293 (454)
.....|+...+...+...... .|.+......++.+|...|+.+.|..++..+.....+. .....-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344556666666666666554 33345555666666666677777766666665542211 11122233333333333
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+...---|...-..+++.+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333333322 113334444455555566666665544444433111123334444444444444
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.88 E-value=1.1 Score=39.21 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=12.0
Q ss_pred HHHHHhcCCcCcHHHHHHH
Q 012879 421 YNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~ 439 (454)
+..+.+.+++++|.+.++-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 4445566777777776653
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.87 E-value=0.49 Score=35.07 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 012879 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV 343 (454)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (454)
.......+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.+. |+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 334455566667777777777777776643 2556666667777777777777777777777665 54
No 263
>PRK09687 putative lyase; Provisional
Probab=95.78 E-value=1.2 Score=38.90 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=13.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR 384 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 384 (454)
..+.++...|.. +|...+..+....||..+-.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~ 271 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFDDNEIIT 271 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHH
Confidence 344444444443 34444444443333443333
No 264
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.75 E-value=1.7 Score=40.32 Aligned_cols=169 Identities=12% Similarity=-0.028 Sum_probs=77.1
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHH
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTS 281 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (454)
..+.|.....+++..+....++.-++.+..++..-|- +...+..++.+|... ..+.-..+++++.+..-|......
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHH
Confidence 3345555555556666555555555556665555431 444555555555555 334445555555554333333332
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC--c---HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKP--N---RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
-+..+...++...+..+|.+....=++- + ...|..+...- ..+.+....+...+.+..|...-...+.-+..-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 2222222355555555555544331110 0 11233333211 234444444444444443433333444444444
Q ss_pred HHhcCChHHHHHHHhcCCCC
Q 012879 357 LGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~ 376 (454)
|....++++|++++..+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 55555555555555544443
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.73 E-value=0.67 Score=35.61 Aligned_cols=124 Identities=9% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChH
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
...++..+...+.......+++.+.. .+...++.++..|++.+ .++..+.++. ..+......+++.|.+.+.++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 34577777777888888888888764 34567888999998764 4555666663 234555666888888999999
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHcc-CchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQN-GDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
++..++.++.. +...+..+... ++++.|.++..... ++..|..++..+..
T Consensus 87 ~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 87 EAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 99999988733 22334444444 78888888877632 55677777777654
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.72 E-value=1.6 Score=39.80 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC--hhH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP---NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD--IKH 349 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 349 (454)
...+|..++..+.+.|.++.|...+.++...+..+ ++.....-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34456667777777777777777777766543111 2223333344455567777777777776662 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcC------CChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH------GNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
...+...... ..+.....-..-.....-..++..+..-.... ++.+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000000000000122333333333333 778888888888888888766677777666
Q ss_pred HHhc
Q 012879 424 LAGV 427 (454)
Q Consensus 424 ~~~~ 427 (454)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 267
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.60 E-value=2.7 Score=41.62 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC----CCCcHH-----HHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG----YGGDYV-----LMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+++.+...+. .|+..+.............. ....|. .+...+...|+.++|.+...+...
T Consensus 537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3444444444 67777766665555443322 233442 344456778999999888777643
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.58 E-value=0.45 Score=36.09 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.....+.|++++|.+.|+.+...-| ...+--.++.+|.+.|++++|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344455566666666666555532 2233444555556666666666666665554
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=1.5 Score=38.30 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=89.4
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc--CCCCchHHHHHHHHHHHHhcCChh
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR--GFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
..|+..+|...++++.+ ..|.|...+...=.+|...|+.+.-...++++... ...|-...+...+..++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45667777777777776 55666666666666777777777666666666543 111222333344555566777777
Q ss_pred HHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 261 SASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV---GLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 261 ~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
+|++.-++..+..+ |.-.-.+....+-..|++.++.++..+-... +--.-...|-...-.+...+.++.|+.+|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77777777776544 5556666666677777777777766543321 1000111222222234455777777777765
Q ss_pred HH
Q 012879 337 MV 338 (454)
Q Consensus 337 ~~ 338 (454)
-.
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.52 E-value=0.04 Score=30.00 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
..|..+...+...|++++|++.++++++..|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677888888888888888888888887753
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.42 E-value=0.055 Score=41.85 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=89.3
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHH
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEF 158 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 158 (454)
.+++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ......++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHH
Confidence 5678888899999999999999987766778899999999999998899888888433 2445567778888888888
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 159 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
|.-++.++...+.. +..+...++++.|.+...+ .++...|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 88888877642211 1113344555555532221 3456677777777766554
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.40 E-value=0.053 Score=31.81 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHH
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLI 81 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 81 (454)
.+|..+...|.+.|++++|.++|+++. +..+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l---~~~P~------~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL---ALDPD------DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcC------CHHHHHHhh
Confidence 568889999999999999999999999 66655 666666554
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.39 E-value=0.11 Score=38.25 Aligned_cols=89 Identities=17% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCC
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGR 362 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 362 (454)
++...|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+-+++..+..|-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555666666666655553 1224455566666665556666666555555544222211 1112222223444555
Q ss_pred hHHHHHHHhcCC
Q 012879 363 LEQAEKTALGIP 374 (454)
Q Consensus 363 ~~~A~~~~~~~~ 374 (454)
-+.|..-|+...
T Consensus 131 dd~AR~DFe~AA 142 (175)
T KOG4555|consen 131 DDAARADFEAAA 142 (175)
T ss_pred hHHHHHhHHHHH
Confidence 555555555433
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.38 E-value=0.2 Score=42.29 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=61.4
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC-------------
Q 012879 264 KLFEDISVERKNLVSWTSIISGFAM-----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG------------- 325 (454)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------- 325 (454)
+.|..+.....|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344444333455566666655543 2445555556666777777777777777777654321
Q ss_pred ---ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 326 ---LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 326 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+-+-+++++++|... |+-||-.+-..|+++|.+.|-.
T Consensus 135 YP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 223467777777665 8888877777778877776653
No 275
>PRK11906 transcriptional regulator; Provisional
Probab=95.36 E-value=2.1 Score=39.44 Aligned_cols=147 Identities=12% Similarity=-0.020 Sum_probs=81.8
Q ss_pred hhHHHHHHHhhhh-cCCCCchHHHHHHHHHHHHhc---------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC
Q 012879 223 VKSCQLIHGYGEK-RGFTAFDIRVLNCLIDTYAKC---------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM 291 (454)
Q Consensus 223 ~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 291 (454)
.+.|..+|.+... +...|.....|..+..++... ....+|.++-++..+..| |......+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 4566777777772 123444456666555554422 234556666666666544 66666666666666777
Q ss_pred hhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012879 292 GKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
++.|..+|++....+ || ..+|......+.-.|+.++|.+.+++..+.........+....++.|+. ...++|..++
T Consensus 354 ~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 354 AKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 778888887777643 33 2333333333445677778877777765432222223333334445554 3455666655
Q ss_pred hc
Q 012879 371 LG 372 (454)
Q Consensus 371 ~~ 372 (454)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 44
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.22 E-value=0.054 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.+|..+..+|...|++++|+..++++++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999999999998888775
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.22 E-value=2.3 Score=38.64 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=41.5
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC----CCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG----YGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
...+|..+...+.+.|+++.|...+.++....+. .+......+..+...|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666677777777777777777776654422 334445566667777777777777766665
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.21 E-value=0.3 Score=41.96 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVTFL 315 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 315 (454)
-..++..++..+...|+++.+...++++....| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456778889999999999999999999988877 788999999999999999999999988765 58888877766
Q ss_pred HHHHH
Q 012879 316 SVLNA 320 (454)
Q Consensus 316 ~l~~~ 320 (454)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 279
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.18 E-value=3.7 Score=40.67 Aligned_cols=80 Identities=5% Similarity=-0.151 Sum_probs=44.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc---CCCCcHHHHHHHHHhcCCc
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER---GYGGDYVLMYNILAGVGRF 430 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 430 (454)
+..+...|....|...+..+... .+......+.......|.++.++.........+. ..+..|...+..+.+.-.+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 34455677877887777766554 3444555555555677777777776655433211 1233455555555444445
Q ss_pred CcHH
Q 012879 431 GDAE 434 (454)
Q Consensus 431 ~~a~ 434 (454)
+.+.
T Consensus 493 ~~~l 496 (644)
T PRK11619 493 PQSY 496 (644)
T ss_pred CHHH
Confidence 4443
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.18 E-value=0.076 Score=45.47 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+..++..+...|+.+.+.+.++++.+.+|.+.+.|..++.+|.+.|+...|++.++++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444433
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.14 E-value=1.1 Score=41.34 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
..+..++.+.|+.++|++.|+++.+.............|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34566667778888888888888764111122345667777777777777777777776544
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.03 E-value=1.3 Score=34.47 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=27.7
Q ss_pred HhcCChhHHHHHHHHhhhcCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHhC
Q 012879 254 AKCGCIFSASKLFEDISVERKNLVSWTSI-ISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.+.++.+++..++..+...+|.......+ ...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665555543332222 23345566666666666665544
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=1.4 Score=34.46 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=7.8
Q ss_pred cCCcchHhHHHHHHHHcC
Q 012879 87 LSHPNLGTQLHAVISKVG 104 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~ 104 (454)
.+..++|+.-|..+.+.|
T Consensus 71 ~~k~d~Alaaf~~lektg 88 (221)
T COG4649 71 ENKTDDALAAFTDLEKTG 88 (221)
T ss_pred cCCchHHHHHHHHHHhcC
Confidence 333444444444444433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.76 E-value=0.062 Score=29.83 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
+|..|...|.+.|++++|++++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777778888888888775543
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.63 E-value=1.3 Score=35.49 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh------hHHH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI------KHYG 351 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 351 (454)
..+...|.+.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+.....++........|. .+|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 33444444444444444444444443222221 223334444444455555555544444321111111 1122
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+ .+...+++.+|-+.|-+....
T Consensus 120 gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 120 GL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HH--HHHHhchHHHHHHHHHccCcC
Confidence 22 123456676666666555443
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.62 E-value=4.2 Score=38.60 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITG 149 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~ 149 (454)
+...+..++.---.....+.+..++..++.. .|.--.-|......=.+.|..+.+.++|++-.. .+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4556666666444444556666677766643 232333556666666678889999999998775 344556655554
Q ss_pred HH-hcCCHHHHHHHHhhCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 150 LV-KWGELEFARSLFEEMPC------RNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 150 ~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
+. ..|+.+...+.|++... .+...|...+..-..++++.....+|++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 45677777777776653 34556777777778888889999999888874
No 287
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=4.9 Score=39.29 Aligned_cols=316 Identities=11% Similarity=-0.007 Sum_probs=169.2
Q ss_pred cCCCCCchhHH-----HHHHHHHhCCChhHHHHHHhhCCCCC---chhHHHHHHHHHhcC---CHHHHHHHHhhCCC--C
Q 012879 103 VGFQSHVYVNT-----ALVNMYVSLGFLKDSSKLFDEMPERN---LVTWNVMITGLVKWG---ELEFARSLFEEMPC--R 169 (454)
Q Consensus 103 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~--~ 169 (454)
.|++.+..-|. .+++-+...+.+..|+++-..+..|. ..+|......+.+.. +-+-+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45555444333 34555666677777777777776654 455555555555552 23334444444544 3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCC---CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTE---PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL 246 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (454)
...+|..+.+.....|+++-|..+++.-...+... .+..-+...+.-+...||.+....++-.+...- +...+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~----~~s~l 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL----NRSSL 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH----HHHHH
Confidence 44567777777777777777777765432221100 111223334444444555554444444443320 11111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHH-HHHHH----hCCCCCcHHHHHHHHHHH
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN-FGRMQ----KVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~----~~~~~p~~~~~~~l~~~~ 321 (454)
+....+...|..+|.+..... |. ..+-+.|....+..++-.+ ++... ..|..|+.. ....++
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~-~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~ 648 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQ-DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAF 648 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhh-ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHH
Confidence 111123344444444443320 00 0111122222222222111 11100 112233322 233333
Q ss_pred hcCCC----------hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHH
Q 012879 322 SHGGL----------VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391 (454)
Q Consensus 322 ~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 391 (454)
.+... ..+-+++.+.+..+++..-..-+.+--+.-+...|+..+|.++-.+.+- ||-..|..-+.+++
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHH
Confidence 33222 2233344455555445444444555566677889999999999888765 79999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..+++++-+++.+.. ..|--|.-...++.+.|+.++|.+++-+...
T Consensus 727 ~~~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred hhhhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 999998877766643 2466788899999999999999998876543
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.61 E-value=6.5 Score=40.69 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHH
Q 012879 150 LVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
--+.|.+..|+.++.-=.+.-...|.+....+...+.+++|.-+|+..-+ ..-.+.+|...|+|.+|..+
T Consensus 918 I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 918 IKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSL 987 (1265)
T ss_pred HHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHH
Confidence 33444444444443322222223444444555556666666666655422 12345566666666666666
Q ss_pred HHhhhhcCCCCchHH--HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 230 HGYGEKRGFTAFDIR--VLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
..++.... +.. +-..|+.-+...++.-+|-++..+..+
T Consensus 988 a~ql~~~~----de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 988 AAQLSEGK----DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhhcCCH----HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 65554321 111 124555556666666666666555444
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=2.3 Score=34.18 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHH--HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHhcCChHHH
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLS--VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHY-----GCLIDMLGRAGRLEQA 366 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A 366 (454)
+.....+++......-...++.. +...+...|++++|...++..... |....+ -.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45555555555422212222222 335677889999999988887743 222233 3355667788999999
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
+..++......-.......-.+.+...|+-++|..-|+++++.++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 999998877522334455667889999999999999999998763
No 290
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.24 E-value=2.9 Score=35.22 Aligned_cols=175 Identities=13% Similarity=0.068 Sum_probs=83.9
Q ss_pred HccCchhHHHHHHHhhhhcC-CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh--hhHHHHHHHHHh------
Q 012879 218 WQNGDVKSCQLIHGYGEKRG-FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL--VSWTSIISGFAM------ 288 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~------ 288 (454)
.+.|++++|...|+.+..+- ..|....+.-.++.++.+.++++.|+..+++.....|+. ..|-.-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 35566666666666665441 122244556666777777888888888777777664421 223333333321
Q ss_pred -cCChhHHHH---HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 289 -HGMGKEAVE---NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 289 -~g~~~~A~~---~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
..+...+.. -|+++++. -||+ .-...|...+..+... + ...=..+.+-|.+.|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~--L---A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA--L---AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH--H---HHHHHHHHHHHHHhcChH
Confidence 123333333 33333332 2222 1111222222222111 0 000023445566666666
Q ss_pred HHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 365 QAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 365 ~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.|..-++++.+..|+ ...+-.+..+|...|-.++|...-+-+....|+
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 666666666655222 234455566677777776666655544443333
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=6.7 Score=38.96 Aligned_cols=117 Identities=11% Similarity=0.124 Sum_probs=82.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
.++.-|....+...-...++.+. +.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~---~~gla------~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~a 469 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALH---KKGLA------NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETA 469 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH---Hcccc------cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHH
Confidence 35666777777777778888888 88887 77778899999999999888777655443 2321 2224556
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
+..+.+.+-.++|..+-..... .......+ +-..+++++|++++..++-
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 7777788888888776655443 33333333 4467899999999999873
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.02 E-value=3.3 Score=35.04 Aligned_cols=223 Identities=15% Similarity=0.122 Sum_probs=118.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH----HHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVAC----EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI----RVL 246 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 246 (454)
..++....+.|++++....|.++..- -.-.-+..+.+.++.......+.+....+++.-.+.--...+. .+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34555666666666666666665421 0112234455666665555555555555444332210000011 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhc-----CC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCcHH
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVE-----RK--------NLVSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKPNRV 312 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~ 312 (454)
+.|...|...|.+.+..++++++.+. +. =...|..=|+.|....+-.+-..++++... ..--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 56777888888888888888887665 11 124677778888888887777888887654 22344444
Q ss_pred HHHHHHHHH-----hcCCChHHHHHHHHHHHHhcCC--CCCh---hHHHHHHHHHHhcCChHHHHHHHhc--CCCC--CC
Q 012879 313 TFLSVLNAC-----SHGGLVEEGLNFFDKMVEECEV--LPDI---KHYGCLIDMLGRAGRLEQAEKTALG--IPSE--IT 378 (454)
Q Consensus 313 ~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~--~p 378 (454)
... +|+-| .+.|.+++|-.-|-++.+.+.- .|.. .-|..|...+.+.|-- =|+. ++.- .|
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDP 302 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCH
Confidence 443 34433 4567888776544444333221 1222 2244555666555410 1111 1111 46
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
.......|+.+|... ++.+-++++.
T Consensus 303 EIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 667778888888543 4444444433
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.77 E-value=0.11 Score=45.12 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=71.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~ 395 (454)
.+-|.++|.+++|+..|...... .| +++++..-..+|.+..++..|+.-.+..... ..-...|+.-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999887753 44 7777878888899999998888777766554 1224456666666667788
Q ss_pred hhHHHHHHHHHHHhhcCCC
Q 012879 396 VEMGERVTRKILEMERGYG 414 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~ 414 (454)
..+|.+-++.++++.|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8899999999999888754
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.74 E-value=3.2 Score=33.94 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=19.0
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
.||--+.+.+...|+.+.|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35666666666666666666666666655
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.70 E-value=2.4 Score=32.38 Aligned_cols=51 Identities=8% Similarity=-0.149 Sum_probs=23.5
Q ss_pred cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.++++.+..++..+.-. .|.....-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 44444444444444433 2323333333333445555555555555555554
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.70 E-value=1.5 Score=35.20 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV---GLKPNRVTFL 315 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~ 315 (454)
...+..+.+.|++.|+.+.|.+.|.++.+... -...+-.+|......+++..+...+.+.... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45677888899999999999999998877522 2235667777788888888888888776542 2222222111
Q ss_pred HHHH--HHhcCCChHHHHHHHHHHHH
Q 012879 316 SVLN--ACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 316 ~l~~--~~~~~~~~~~a~~~~~~~~~ 339 (454)
.... .+...+++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 23346788888887776654
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.66 E-value=0.62 Score=37.35 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNR-----VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDML 357 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 357 (454)
.-+.+.|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-....++. .|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 3456677777777777777664 22222 23333344556666676666665555543 232 22222334466
Q ss_pred HhcCChHHHHHHHhcCCCCCCc
Q 012879 358 GRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
.+...+++|++-|.++....|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 6777777777777776666443
No 298
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.65 E-value=0.2 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+|..+...|...|++++|.+.|++.++..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667778888888888888888888887763
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.61 E-value=2.9 Score=32.97 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhc--CCHHHHHHHHhhCCCCCcc
Q 012879 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW--GELEFARSLFEEMPCRNVV 172 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~~~~~ 172 (454)
+++..+.+.+++|+...+..+++.+.+.|++.....++..-.=+|.......+-.+... .-..-|.+.+.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 44455556777788888888888888888877777766654444443333222222111 11344555555554 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
.+..++..+...|++-+|+++.++.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4556677788888888888887765
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.57 E-value=8.9 Score=38.46 Aligned_cols=219 Identities=12% Similarity=-0.003 Sum_probs=112.3
Q ss_pred HccCchhHHHHHHHhhhhcCCCC---ch---HHHHHHHH-HHHHhcCChhHHHHHHHHhhhc------CCChhhHHHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTA---FD---IRVLNCLI-DTYAKCGCIFSASKLFEDISVE------RKNLVSWTSIIS 284 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~---~~---~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~l~~ 284 (454)
....++++|..+..++...-..| .. ...++.|- ......|++++|.++-+..... .+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44556666666666655431111 01 11223222 2233467788888877766555 234556677777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHH---HHH--HHHhcCCC--hHHHHHHHHHHHHhcCC-C----CChhHHHH
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFL---SVL--NACSHGGL--VEEGLNFFDKMVEECEV-L----PDIKHYGC 352 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~-~----~~~~~~~~ 352 (454)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|. ..+....|......... + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778889998888877765532122332222 221 23445562 33333344433332111 1 11233444
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC----CCcH--h--HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC--CCcHHHH--
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE----ITDV--V--VWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLM-- 420 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~----~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l-- 420 (454)
+..++.+ .+.+..-....... .|.. . .+..|+......|+.++|...++++....... ...|...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444544 44443333322222 2322 2 22367778888999999999999988766553 2222211
Q ss_pred ---HHHHHhcCCcCcHHHHHHH
Q 012879 421 ---YNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 421 ---~~~~~~~g~~~~a~~~~~~ 439 (454)
.......|+.+.+...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1122345777777666655
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.43 E-value=2.9 Score=32.50 Aligned_cols=72 Identities=7% Similarity=-0.146 Sum_probs=48.1
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAM 288 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (454)
..-...++.+.+..++..+.-. .|..+..-..-...+...|++.+|.++|+++....|....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3345677888888888877775 45455555555666777888888888888877765555545555555544
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.36 E-value=6.9 Score=36.56 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=115.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
|-....+++..+..+..+.-+..+..+|..- ..+...|..++.+|... ..++-..+|+++.+..+. |...-..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHHH
Confidence 4455667788888888888888888888865 35667788888888877 667778888888886432 45555556
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-CC---Ch---hhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCcHHHHHHHHHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVE-RK---NL---VSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~-~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~ 321 (454)
+..|-+ ++.+.+..+|.++... -| +. ..|.-+...- ..+.+....+..++.. .|..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 7888888888877654 11 11 2444444322 3456666666666654 34344455566666777
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
....++++|++++..+.+. -..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEH--DEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHH
Confidence 8888888888888888764 23344444444443
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.33 E-value=0.17 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQ 58 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 58 (454)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999955
No 304
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.24 E-value=12 Score=39.07 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=18.9
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHH
Q 012879 136 PERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGY 181 (454)
Q Consensus 136 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 181 (454)
..+|..+-...+..+.+.+..+....+...+..++...-...+.++
T Consensus 631 ~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 631 ADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred cCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444444444455554444433333333333334433333333333
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.88 E-value=0.14 Score=28.01 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|.++..|+.+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4556667777777777777766664
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.85 E-value=0.28 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcC
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTH 63 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 63 (454)
..+++.+...|...|++++|..++++...+.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 467899999999999999999999998855443
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=4.9 Score=33.39 Aligned_cols=100 Identities=7% Similarity=0.063 Sum_probs=55.1
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHHhcCC-CCChh---HHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHH---HH
Q 012879 317 VLNACSHG-GLVEEGLNFFDKMVEECEV-LPDIK---HYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWR---TL 386 (454)
Q Consensus 317 l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~---~l 386 (454)
+...|-.. .++++|+..|+..-+-+.- ..+.. .+-.....-...+++.+|+.+|+++... ..+..-|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444333 5677777777776553221 11222 2222333345678889999999886654 11222221 12
Q ss_pred HH---HHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 387 LG---ACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 387 ~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
+. ++....|.-.+...+++..+..|.-..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 21 2233467777888888888888884443
No 308
>PRK09687 putative lyase; Provisional
Probab=92.75 E-value=6.3 Score=34.46 Aligned_cols=230 Identities=13% Similarity=0.009 Sum_probs=114.4
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCH----HHHHHHHhhC--CCCCcchHHHHHHHH
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGEL----EFARSLFEEM--PCRNVVSWTGIIDGY 181 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~~~~ 181 (454)
|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. +++...+..+ .+++..+-...+.++
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aL 115 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINAT 115 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3344444444444444322222222222234444444445555555542 3455555543 234444444444444
Q ss_pred HhcCCh-----HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 182 TRMNRS-----NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 182 ~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. + +..+-...+.++.+.
T Consensus 116 G~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~-~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 116 GHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---P-NGDVRNWAAFALNSN 186 (280)
T ss_pred hcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---C-CHHHHHHHHHHHhcC
Confidence 433221 223333333322 23555555666666666653 344444444442 2 445555555555554
Q ss_pred C-ChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHH
Q 012879 257 G-CIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD 335 (454)
Q Consensus 257 g-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 335 (454)
+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. +|...+.
T Consensus 187 ~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHH
Confidence 3 23345555555443 2566667777777777776 455555555555432 234566777777775 6777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHH
Q 012879 336 KMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.+.+. .||..+-...+.++
T Consensus 259 ~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 259 TLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHhh---CCChhHHHHHHHHH
Confidence 77653 34655555444443
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=2.1 Score=40.56 Aligned_cols=150 Identities=17% Similarity=0.065 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHH
Q 012879 151 VKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIH 230 (454)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 230 (454)
.-.|+++.|..++..+.+ ...+.+++.+.++|-.++|+++- +|+.. -.....+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHH
Confidence 345666666665555542 23344556666666666665432 22111 112233456666665554
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 231 GYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
.+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. |
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N 725 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N 725 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c
Confidence 4321 445566666666666777666666666554 455555555566655555555444444422 1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
....++...|+++++.+++..
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHh
Confidence 122234455666666655544
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.57 E-value=6.2 Score=33.95 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
++......|...|.+.+|.++.++++..+|-+...+..+...+...|+--.|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667889999999999999999999999999999999999999998888777766643
No 311
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.47 E-value=1.2 Score=37.79 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHcc----------------CchhHHH
Q 012879 169 RNVVSWTGIIDGYTR-----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQN----------------GDVKSCQ 227 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 227 (454)
+|-.+|...+..+.. .+.++-....++.|.+- |+.-|..+|..|+..+-+. .+-+-++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 344444444444332 23444444455555555 6666666666666655332 2234467
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 228 LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
.++++|...|+.| |..+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMP-DKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence 7888888888776 77788888888876654
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.35 E-value=0.33 Score=42.21 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
..-|.+.|.+++|++.|...... .| |.+++..-..+|.+...+..|+.-....... . ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 45688999999999999987764 45 8888888888999999988887766666543 1 011233444444444456
Q ss_pred ChHHHHHHHhcCCCCCCc
Q 012879 362 RLEQAEKTALGIPSEITD 379 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~ 379 (454)
...+|.+-++......|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 666666666666655555
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.34 E-value=0.32 Score=37.51 Aligned_cols=131 Identities=9% Similarity=0.125 Sum_probs=85.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHH
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTA 114 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (454)
..+++.+.+.+.+.....+++.+. ..+.. . +....+.++..|++.++.+...++++. .+..-...
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~---~~~~~--~---~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~ 75 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALV---KENKE--N---NPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDK 75 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHH---HTSTC------SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH---hcccc--c---CHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHH
Confidence 456788888999999999999998 55544 3 788899999999999888888887761 12233345
Q ss_pred HHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCh
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRS 187 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (454)
++..|.+.|.++++.-++.++...+.. +..+...++++.|.+.+.+. ++...|..++..+...+..
T Consensus 76 ~~~~c~~~~l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 76 ALRLCEKHGLYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHTTTSHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHhcchHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 777778888888887777665331110 00122334444444333333 4567788888887766543
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.32 E-value=4.6 Score=31.86 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=83.4
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCch
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLV 141 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 141 (454)
..+.. | +...|..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++=-.|..+=..
T Consensus 22 ~~~i~--~---~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 22 QHNIP--V---QHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HcCCC--C---CHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhh
Confidence 77777 7 889999999999999976544 44466677777655444332222 2233333333333332233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
.+..++..+...|++-+|.++.+.....+......++.+..+.+|..-=..+|+-...
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667788899999999999999887655555556677777777776655555554443
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.11 E-value=6.7 Score=33.30 Aligned_cols=267 Identities=8% Similarity=0.015 Sum_probs=158.3
Q ss_pred ChhhHHHHHHHH-hccCCcchHhHHHHHHHHcCCC---CCchhHHHHHHHHHhCCChhHHHHHHhhCCC---------CC
Q 012879 73 DSFTYSFLIRTC-ATLSHPNLGTQLHAVISKVGFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---------RN 139 (454)
Q Consensus 73 ~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~ 139 (454)
|+..=|..-.+- .+..++++|+.-|+++++..-. ..-...-.++..+.+.|++++....+.++.. -+
T Consensus 25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 665544443332 2344788999999988874211 2233556678889999999999998888763 24
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCc----chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----
Q 012879 140 LVTWNVMITGLVKWGELEFARSLFEEMPC-----RNV----VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---- 206 (454)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 206 (454)
..+.|+++.......+.+.-.++++.-.+ .|. .|-+.+...|...|.+.+..++++++.++ ....|
T Consensus 105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S-Cq~edGedD 183 (440)
T KOG1464|consen 105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS-CQTEDGEDD 183 (440)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH-hccccCchh
Confidence 45677777776666666655555544321 222 24456778888888888888888887653 11111
Q ss_pred -------hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH----HHHHHhcCChhHHHHHHHHhhhc---
Q 012879 207 -------EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL----IDTYAKCGCIFSASKLFEDISVE--- 272 (454)
Q Consensus 207 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~--- 272 (454)
...|..=+..|....+-.+...++++........|.+.+...+ .....+.|.+++|-.-|-+.-+.
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 1357777777877777777778888776544334455554433 23455678888876544444332
Q ss_pred --CCCh---hhHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 012879 273 --RKNL---VSWTSIISGFAMHG----MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV 343 (454)
Q Consensus 273 --~~~~---~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (454)
.|-- .-|-.+...+.+.| +..+| .-..-.|.....+.++.+|- .++..+-.+++..-.. .+
T Consensus 264 sGspRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~--~I 333 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRS--NI 333 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhc--cc
Confidence 2221 22445555555544 11111 11122456667788888884 4566666666555433 44
Q ss_pred CCChhHH
Q 012879 344 LPDIKHY 350 (454)
Q Consensus 344 ~~~~~~~ 350 (454)
-.|+..-
T Consensus 334 M~DpFIR 340 (440)
T KOG1464|consen 334 MDDPFIR 340 (440)
T ss_pred cccHHHH
Confidence 4455443
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.09 E-value=0.44 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444455555555555555444443
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.04 E-value=0.45 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+..+..+|...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.65 E-value=2 Score=39.41 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=74.9
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 286 FAMHGMGKEAVE-NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 286 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
-...|+...|-+ ++.-+....-.|+.....+.| +...|+++.+.+.+....+ -+.....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 334566655544 444444443345544443333 4566778877777776654 33445566677777777778888
Q ss_pred HHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 365 QAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 365 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
+|...-+.|... ..++.+...........|-++++...|+++....|+..
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 887777777665 23333333333344455677777777777777766633
No 319
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=15 Score=37.48 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcC--------CChhHHHHH--HHH---HHHhh----cC----
Q 012879 356 MLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFH--------GNVEMGERV--TRK---ILEME----RG---- 412 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~--------g~~~~A~~~--~~~---~~~~~----~~---- 412 (454)
.|......+-+..+++.+... .++....+.++..|+.. ++-+++.+. -++ +++.. |+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 355666777777777776655 44555666666666432 122334333 111 22111 11
Q ss_pred ---CCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 413 ---YGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 413 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
....|...+-.+.+.|+.++|+.++-...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 12356666777778999999998875543
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.24 E-value=2.2 Score=30.04 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++...+- ....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 356666666667777888888888888888888888888888888775443 2336666654
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.03 E-value=10 Score=33.39 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHc--cCc----hhHHHHHHHhhhhc
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQ--NGD----VKSCQLIHGYGEKR 236 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~ 236 (454)
++.+.+++.+.+. |+.-+..+|.+..-.... ..+ ...+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455666777766 666666665543333322 111 23445555555553
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.00 E-value=2 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.++..++. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44456666666666677888888888888888888888888888887754332 3445555543
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.96 E-value=1.1 Score=34.08 Aligned_cols=84 Identities=17% Similarity=0.056 Sum_probs=48.3
Q ss_pred hhHHHHHHHHH---HhcCChHHHHHHHhcCCCCCCcHhHHH-HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 347 IKHYGCLIDML---GRAGRLEQAEKTALGIPSEITDVVVWR-TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 347 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
..+.+.|++.. ...++++++..+++.+.-..|+..-.. .-...+...|++++|+++|+++.+..+..+..-..++.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 33444554443 346788888887777766544433222 22344667888888888888877655544333334444
Q ss_pred HHHhcCCc
Q 012879 423 ILAGVGRF 430 (454)
Q Consensus 423 ~~~~~g~~ 430 (454)
++.-.|+.
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 44444443
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.73 E-value=24 Score=36.94 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHh
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV--TFLSVLNACS 322 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~ 322 (454)
.|.+..+.+...+.+++|--.|+..-+ ..-.+.+|...|+|.+|+.+..++... -+.. +-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 444555555566667777666665544 233456677778888888877766432 1221 1245666677
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 375 (454)
..++.-+|-++..+.... | ...+..|++...+++|..+......
T Consensus 1011 e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhccc
Confidence 778888887777776542 2 2344556777788888877776653
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=19 Score=35.72 Aligned_cols=167 Identities=10% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCC---CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHH
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELE 157 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 157 (454)
++-+.+.+.+++|+++-+.. .|..| -......++..+...|++++|-...-.|...+..-|.--+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34455566677777665433 23333 23456677777788888888888877777777777777666666666665
Q ss_pred HHHHHHhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 158 FARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 158 ~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
....++-.-.. -++..|..++..+.. .+ . .-|.+.++ ..+++...-...+++ +-.++.+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~---~-~~F~e~i~--~Wp~~Lys~l~iisa------------~~~q~~q~ 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SD---V-KGFLELIK--EWPGHLYSVLTIISA------------TEPQIKQN 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HH---H-HHHHHHHH--hCChhhhhhhHHHhh------------cchHHHhh
Confidence 54444332222 244567777776666 21 1 22222222 112222111111111 11111111
Q ss_pred CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 237 GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
.. +......|+..|...+++..|+..+-...+
T Consensus 502 --Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 502 --SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11 334445589999999999999999888766
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.53 E-value=18 Score=35.33 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.6
Q ss_pred ccCchhHHHHHHHhhhh
Q 012879 219 QNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~ 235 (454)
...|.+.|..+++.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34455555555555544
No 327
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=3.6 Score=35.70 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVER-----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
+..+...++..-....++++++..+-++.... |+. +-.+.++.+. .-++++++.++..=++.|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555555677888888777776541 221 1222333333 3367788888888888999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHh
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+++.+.+.+++.+|.++.-.|..+
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999888887765
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.14 E-value=38 Score=38.42 Aligned_cols=312 Identities=8% Similarity=-0.054 Sum_probs=172.9
Q ss_pred HHHHHHHhCCChhHHHHHHhhCC----CC--CchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCcchHHHHHHHHHhcCC
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEMP----ER--NLVTWNVMITGLVKWGELEFARSLFEE-MPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~~----~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 186 (454)
.+..+-.+++.+..|...++.-. +. ...-+..+...|...+++|...-+... ...|+ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 44455667888999999988832 11 112344444588888888887777763 33333 2334556677899
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
+..|...|+++.+. -++...+++-++......|.+.......+-..... .+.....++.-+.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999874 34447788888888888888888877665555441 2212223334455556777877777665
Q ss_pred HHhhhcCCChhhHHHH--HHHHHhcC--ChhHHHHHHHHHHhCCCCCc---------HHHHHHHHHHHhcCCChHHHHHH
Q 012879 267 EDISVERKNLVSWTSI--ISGFAMHG--MGKEAVENFGRMQKVGLKPN---------RVTFLSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~A~~~~~~m~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~ 333 (454)
. . .+..+|... .....+.. +.-.-.+.++.+++.-+.|- ...|..++....-. +-...
T Consensus 1542 ~---~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~ 1612 (2382)
T KOG0890|consen 1542 S---D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENS 1612 (2382)
T ss_pred h---c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHH
Confidence 5 1 344444443 23322222 21122233333333211110 12233333222111 00011
Q ss_pred HHHHHHhcCCCCChhH------HH---HHHHHHHhcCChHHHHH-HHhcCCCC----CCcHhHHHHHHHHHHcCCChhHH
Q 012879 334 FDKMVEECEVLPDIKH------YG---CLIDMLGRAGRLEQAEK-TALGIPSE----ITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 334 ~~~~~~~~~~~~~~~~------~~---~l~~~~~~~g~~~~A~~-~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
.+.. .+..++..+ |. ...+.+.+...+--|.+ .+...... .--..+|-...+.....|+++.|
T Consensus 1613 ~~~l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEEL---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHh---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 1111 122222111 11 11222222222222211 11111111 12356788888888889999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
...+-++.+.. .+..+.-.+..+.+.|+...|..++++..+...
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 98888887765 566788889999999999999999998886543
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.11 E-value=0.45 Score=25.38 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=15.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+..++.+.|++++|.+.|+++++.-|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555556666666666666555443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.07 E-value=5.2 Score=38.11 Aligned_cols=27 Identities=26% Similarity=0.137 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
.-|..|.++....|++..|.+.|....
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344444444444555555544444433
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.93 E-value=2 Score=34.75 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=44.2
Q ss_pred chhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcc
Q 012879 12 NITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 91 (454)
+.|++.|-.+...+. .-|+...-.|..-|. ..+.++|+.++.++..+...+.. + |+..+..|+..+.+.|+++
T Consensus 123 ~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~--~---n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN--F---NPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC--C---CHHHHHHHHHHHHHhcchh
Confidence 444444545555554 455555555555554 46667777777776644444433 4 6677777777777777666
Q ss_pred hH
Q 012879 92 LG 93 (454)
Q Consensus 92 ~a 93 (454)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 55
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.91 E-value=8.7 Score=35.56 Aligned_cols=122 Identities=8% Similarity=0.076 Sum_probs=75.2
Q ss_pred HHHHHccCchhHHHHH-HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CCChhhHHHHHHHHHhcCC
Q 012879 214 LPAIWQNGDVKSCQLI-HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RKNLVSWTSIISGFAMHGM 291 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 291 (454)
+.-....||.-.|-+- +..+... |.++.........+...|+++.+...+...... .....+..+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~---~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ---QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC---CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 3334455666655543 3333333 224444444445566678888888887776654 3455667778888888888
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
++.|..+-..|....++ ++..........-..|-++++...|+++..
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 88888888888776655 333333333333445677888888887764
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.70 E-value=23 Score=35.21 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh-ccCCcchHhHHHHHHHHcCCCCCch-----hHHHHHHHHHh
Q 012879 48 QKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA-TLSHPNLGTQLHAVISKVGFQSHVY-----VNTALVNMYVS 121 (454)
Q Consensus 48 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~ 121 (454)
..|++.++.+. ....- ||.....++-.+.+.+. ...+++.|+..+++.....-.++.. ....++..+.+
T Consensus 38 ~~ai~CL~~~~---~~~~l--~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 38 ATAIKCLEAVL---KQFKL--SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHHh---ccCCC--CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 35677777776 32211 33335566667777766 6678999999999876644333322 23356677777
Q ss_pred CCChhHHHHHHhhCCC---C-Cc----hhHHHH-HHHHHhcCCHHHHHHHHhhCCC-----CC--cchHHHHHHHH--Hh
Q 012879 122 LGFLKDSSKLFDEMPE---R-NL----VTWNVM-ITGLVKWGELEFARSLFEEMPC-----RN--VVSWTGIIDGY--TR 183 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~---~-~~----~~~~~l-l~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~l~~~~--~~ 183 (454)
.+... |...+++..+ . .. ..|..+ +..+...++...|.+.++.+.. .+ ..++-.++.+. ..
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 77665 8888877653 1 11 123333 2333344899999999987753 22 23334444443 34
Q ss_pred cCChHHHHHHHHHHHHcc--------CCCCChhhHHhHHHHH--HccCchhHHHHHHHhh
Q 012879 184 MNRSNEALALFRKMVACE--------YTEPSEITILAVLPAI--WQNGDVKSCQLIHGYG 233 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 233 (454)
.+.++++++.+.++.... ..+|...+|..+++.+ ...|+++.+...++.+
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566777888777764320 1235567777777765 4667766665554444
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.43 E-value=0.92 Score=25.76 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+++.+...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888888888877754
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.37 E-value=44 Score=38.00 Aligned_cols=316 Identities=10% Similarity=0.023 Sum_probs=168.6
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCC--CCCchhHHHHHHHHHhCCChhHHHHHHhh-CCCCCchhHHHHHHHHHhcCC
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLGFLKDSSKLFDE-MPERNLVTWNVMITGLVKWGE 155 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~ 155 (454)
.+..+--+.+.+.+|...++.-..... ......+..+...|+..+++|+...+... ...|+. ..-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 334444566778888888887311111 11233455566699999999988887773 333332 233445667899
Q ss_pred HHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhH-HHHHHccCchhHHHHHHH
Q 012879 156 LEFARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV-LPAIWQNGDVKSCQLIHG 231 (454)
Q Consensus 156 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 231 (454)
+..|...|+.+.+ |+ ..+++-++......|.++.++-..+-... ...+....++.+ +.+-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999986 33 56788888888888999888886665554 233333333333 345578888888877766
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHhc--CChhHHHHHHHHhhhc-----------CCChhhHHHHHHHHHhcCChhHHHHH
Q 012879 232 YGEKRGFTAFDIRVLNCLIDTYAKC--GCIFSASKLFEDISVE-----------RKNLVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
..+.. +..+. .++....+. .+.-.-.+..+.+.+. +.-...|..++..+.-.. -...
T Consensus 1543 ---~~n~e--~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~ 1612 (2382)
T KOG0890|consen 1543 ---DRNIE--YWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENS 1612 (2382)
T ss_pred ---ccccc--chhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHH
Confidence 22111 11111 122222222 1211111233322221 000123333333322111 1111
Q ss_pred HHHHHhCCCCCcHH------HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHH
Q 012879 299 FGRMQKVGLKPNRV------TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-----DIKHYGCLIDMLGRAGRLEQAE 367 (454)
Q Consensus 299 ~~~m~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~ 367 (454)
.+... ++.++.. -|..-+..-....+..+-+--+++..-.....| -..+|....+...++|+++.|.
T Consensus 1613 ~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111 1222211 121122111111112222212222111101122 2567778888888899999998
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 368 KTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 368 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..+-...+.. -+..+--..+-+...|+...|+.++++.++....
T Consensus 1691 nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1691 NALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8776666552 3445556677888999999999999999976544
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.07 E-value=14 Score=31.96 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc-c-CchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQ-N-GDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.+.+|+++|+.....+.+--|..+...+++.... . .....-.++.+.+...-...++..+....++.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 3456666666322111345566666666666544 1 1233333444444432112226666777777777777877777
Q ss_pred HHHHHhhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 264 KLFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 264 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
++++..... ..|...|..+|......|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766554 23677777777777777777665555544
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=3.9 Score=35.49 Aligned_cols=99 Identities=7% Similarity=0.046 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVG---LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG 351 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 351 (454)
...+...++..-...++++.++..+-+++... ..|+.. -...++.|.+ -++++++.++..=+.- |+-||..++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqY-GiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQY-GIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchh-ccccchhhHH
Confidence 33444555555555667777777777766431 122211 1222333322 3566777776666554 7778888888
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+|+.+.+.+++.+|..+...|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888887777766665543
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.71 E-value=11 Score=30.38 Aligned_cols=56 Identities=13% Similarity=-0.038 Sum_probs=23.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.......|.+++|+..++......-.......-.+.+...|+-++|..-|++.++.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444445555555554444431111111222234444455555555555444443
No 339
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.57 E-value=9.4 Score=29.27 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC-cchHhHHHHHHHHcCCCCCc
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH-PNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 109 (454)
....|.++......+++.-.+.+++.+..+...... ...+..+|+.++++.++... ---+..+|..+.+.+.++++
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~---~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~ 115 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII---GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTP 115 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh---hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCH
Confidence 346788998889999999999988888643222221 11277899999999977776 45578899999988889999
Q ss_pred hhHHHHHHHHHhC
Q 012879 110 YVNTALVNMYVSL 122 (454)
Q Consensus 110 ~~~~~l~~~~~~~ 122 (454)
.-|..++.++.+-
T Consensus 116 ~dy~~li~~~l~g 128 (145)
T PF13762_consen 116 SDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988655
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.09 E-value=0.81 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=12.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
+..++.+.|++++|.+.|+++....|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444555555555555444333
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.96 E-value=5 Score=32.60 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=9.0
Q ss_pred ChhhHHHHHHHHHhcCChhHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A 295 (454)
|+..+..|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 334444444444444444433
No 342
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.73 E-value=20 Score=32.56 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPE------RNLVTWNVMITGLVKWGELEFARSLFEEMP 167 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 167 (454)
.+.-+...|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 455566677777777777777777543 122345555555556666655555554433
No 343
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.69 E-value=19 Score=31.79 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhc--CC----ChHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCh--
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSH--GG----LVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRL-- 363 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-- 363 (454)
+...+++.|.+.|..-+..+|-+....... .. ....|..+|+.|++.+.+ .++...+..++.. ..+++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666666665555442222221 11 234566677777665333 2333444444322 22332
Q ss_pred --HHHHHHHhcCCCC----CCcHhHHHHHHHHHHcCCC--hhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 364 --EQAEKTALGIPSE----ITDVVVWRTLLGACSFHGN--VEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 364 --~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
++++.+|+.+.+. ..+......++..+-.... ..++.++++.+.+.+......+...+..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3334444444442 1122333333322222211 335666666666665553333333333333
No 344
>PRK10941 hypothetical protein; Provisional
Probab=87.41 E-value=2.4 Score=36.65 Aligned_cols=63 Identities=16% Similarity=-0.029 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
..+.+-.+|.+.++++.|+.+.+.++...|+++.-+.--+-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566677888888888888888888888887777777888888888888888777776654
No 345
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=19 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCChhh-------HHhHHHHHHccCchhHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT-------ILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a 226 (454)
.+.+-..+.+++++|+..|.++... |+..|..+ ...+...|...|+...-
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3556667788889999999888887 66665543 44555566666665443
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.48 E-value=1.4 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.140 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555443
No 347
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.48 E-value=15 Score=29.32 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHhcC-----------ChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG-----------CIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 295 (454)
..-|++.... .|....++..+..+|...+ .+++|...|++.....|+...|+.-+.... +|
T Consensus 55 isK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------ka 126 (186)
T PF06552_consen 55 ISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------KA 126 (186)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------TH
T ss_pred HHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hh
Confidence 3334444443 4545566666666665432 245555555555555677777776665543 34
Q ss_pred HHHHHHHHhCC
Q 012879 296 VENFGRMQKVG 306 (454)
Q Consensus 296 ~~~~~~m~~~~ 306 (454)
-++..++.+++
T Consensus 127 p~lh~e~~~~~ 137 (186)
T PF06552_consen 127 PELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.44 E-value=6.6 Score=27.47 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHH
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLL 387 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 387 (454)
|.-++.+-++.+... .+.|++.+..+-+++|.+.+++..|.++++.++.+ ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 444555666666554 66777777777777777777777777777766654 22333444444
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.12 E-value=0.56 Score=40.96 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=58.4
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 401 (454)
..|.++.|++.|...++. -++....|..-...+.+.+++..|++-++......||. .-|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 446666666666666542 12334444444555666666666666666555553332 233333334445566666666
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHH
Q 012879 402 VTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
.++.+.+++.+.. +-..+-...-+.+..++-...+++.
T Consensus 204 dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHH
Confidence 6666666554321 2223333344444444444444333
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.46 E-value=7.4 Score=27.55 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=26.8
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
..+-++.+......| ++.+..+.+.++.+.+++..|.++|+.+...
T Consensus 29 ~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344445555555455 6777777777777777777777777766654
No 351
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=0.77 Score=38.09 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=51.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHh-----cCCCCChh-----------HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHh
Q 012879 319 NACSHGGLVEEGLNFFDKMVEE-----CEVLPDIK-----------HYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVV 381 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 381 (454)
+-+.+.|++.+|..-|.++... ..-+|... .+..+..++...|++-++++...++... +.++.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 4466778888888777776542 01122211 2222334444556666666666555555 33455
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.|-.-..+.+..=+..+|.+-|.++++.+|.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 5555555555555666666666666666554
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.22 E-value=1.3 Score=22.75 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
|..+...+...|+++.|...+++.++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3444455555555555555555555443
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.58 E-value=2.1 Score=21.51 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=10.1
Q ss_pred HHHHHHHhCCChhHHHHHHh
Q 012879 114 ALVNMYVSLGFLKDSSKLFD 133 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~ 133 (454)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 354
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.04 E-value=2 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
-.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 346678899999999999999999999987654
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.99 E-value=1.5 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 419 LMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.++.+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4667777777777777777776643
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.92 E-value=2.5 Score=39.90 Aligned_cols=101 Identities=14% Similarity=-0.003 Sum_probs=70.8
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
...|+...|.+.+....-. .|- ......|.....+.|...+|..++.+.... ...+.++..+.+++....++++
T Consensus 618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3457888888877776533 332 223345566666777777888777765554 3456677788888888889999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
|++.|+++.+..|.++..-..+...-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999988888776666554433
No 357
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.84 E-value=26 Score=30.06 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
++++|...|++.+|++-|+.-+.
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 45777888888888877766544
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.35 E-value=2.5 Score=35.14 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=64.8
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIK-HYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 398 (454)
|.....++.|+.-|.+.. .+.|+.. -|+.=+.++.+..+++.+.+-..+.++..|+. .....+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 556677888888777766 4567764 44566777888889988888887777775654 344556667778888999
Q ss_pred HHHHHHHHHHhhcC
Q 012879 399 GERVTRKILEMERG 412 (454)
Q Consensus 399 A~~~~~~~~~~~~~ 412 (454)
|+..+.++..+...
T Consensus 97 aI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 97 AIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998766544
No 359
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.23 E-value=1.1e+02 Score=36.66 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=67.3
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh----ccCCcchHhHHHHHHHHcCCCCCchhHHH
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA----TLSHPNLGTQLHAVISKVGFQSHVYVNTA 114 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (454)
-.|.+.|.+++|..+|++...-...+.. | .+..-|.....-+. ...+++--. +.| -....+..
T Consensus 2490 ~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~--~--~~~~Ey~lWed~WI~Ca~eL~QWdvl~-------e~~--k~~~~~~l 2556 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKAQVKAREGAI--P--YSESEYKLWEDHWIRCASELQQWDVLT-------EFG--KHEGNYEL 2556 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHHHHHHhcccC--C--CCcHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--hccCCcee
Confidence 3456677777777777766532223332 2 13333444333322 222222111 111 11222334
Q ss_pred HHHHHHhCCChhHHHHHHhhCCC--CC-----chhHHHHHHHHHhcCC-HH-----------HHHHHHhhCCCCCcchHH
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPE--RN-----LVTWNVMITGLVKWGE-LE-----------FARSLFEEMPCRNVVSWT 175 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~ll~~~~~~~~-~~-----------~A~~~~~~~~~~~~~~~~ 175 (454)
++.+..+..++..-...+..... ++ ...|..++..+-...+ .. .++.-+++.++.......
T Consensus 2557 lle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~ 2636 (3550)
T KOG0889|consen 2557 LLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHV 2636 (3550)
T ss_pred eeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhH
Confidence 55555566666665555555442 22 2334444433332222 22 222333333333334445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
.++.++..--...+|..++....+
T Consensus 2637 ~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2637 PLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 566666666666777777666554
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.98 E-value=6.5 Score=32.31 Aligned_cols=58 Identities=9% Similarity=-0.097 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 78 SFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 78 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
+.-++.+.+.+...+++...+.-++.. +.|......+++.++-.|++++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 334455555666666666666555544 4455566666666666666666665555443
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.84 E-value=4 Score=23.83 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=12.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 362
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.29 E-value=70 Score=33.66 Aligned_cols=246 Identities=9% Similarity=-0.038 Sum_probs=145.8
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh-hHHHHHHhhCCCCCchhHHHHHHHHH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL-KDSSKLFDEMPERNLVTWNVMITGLV 151 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ll~~~~ 151 (454)
|...-...+..+...+..+ +...+..+.+ .++...-...+.++.+.+.. .....+...+..+|..+-...+..+.
T Consensus 634 d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~ 709 (897)
T PRK13800 634 DPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLR 709 (897)
T ss_pred CHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6666667777777777533 4455555543 34555555555555554322 11222223333466666666666665
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH-HHHHH
Q 012879 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS-CQLIH 230 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 230 (454)
..+.-+ ...+...+..+|...-...+.++...+..+. +..... .++...-.....++...+..+. +...+
T Consensus 710 ~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 710 ALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred hhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 543211 2345556667777777777777777665432 222322 4666777777777777766543 33444
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 231 GYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
..+.+. + ++.+-...+.++.+.|....+...+..+... ++..+-...+.++...+. +++...+..+.+ .|+
T Consensus 781 ~~ll~D---~-d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~ 851 (897)
T PRK13800 781 RALTGD---P-DPLVRAAALAALAELGCPPDDVAAATAALRA-SAWQVRQGAARALAGAAA-DVAVPALVEALT---DPH 851 (897)
T ss_pred HHHhcC---C-CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC-CChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCC
Confidence 455443 3 7788888889999888876554444444432 666666667777777765 456666666665 356
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
...-...+.++.+.+....+...+..+.+.
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 777777777887764445677777766653
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.68 E-value=56 Score=32.08 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=153.0
Q ss_pred HHHHHHHHhhCCC-CCcchHHHHHHH-----HHhcCChHHHHHHHHHHHH-------ccCCCCChhhHHhHHHHHHccC-
Q 012879 156 LEFARSLFEEMPC-RNVVSWTGIIDG-----YTRMNRSNEALALFRKMVA-------CEYTEPSEITILAVLPAIWQNG- 221 (454)
Q Consensus 156 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~- 221 (454)
...|.+.++.... .+...-..+..+ +....+.+.|+.+|+.+.. . + .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCC
Confidence 4677777777664 233333323222 3456789999999998866 3 3 3345666677776643
Q ss_pred ----chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh---cCChhHHHHHHHHhhhcCCChhhHHHHHHHHH----hcC
Q 012879 222 ----DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK---CGCIFSASKLFEDISVERKNLVSWTSIISGFA----MHG 290 (454)
Q Consensus 222 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 290 (454)
+.+.|..++....+.|. | +.... +..+|.. ..+...|.++|.......-....|.. ..+|. -..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~l-a~~y~~G~gv~r 378 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-P-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRL-ALCYELGLGVER 378 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-c-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHH-HHHHHhCCCcCC
Confidence 66779999999998863 2 33333 3333333 24678999999998876433333332 22222 233
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---Hh----cCCh
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML---GR----AGRL 363 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~ 363 (454)
+...|..++.+.-+.| .|....-...+..+.. ++++.+.-.+..+... +.+.....-..++... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccch
Confidence 7789999999998887 3332222233334444 7777777666666654 4432211111111111 01 1244
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHHcC----CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc-CC--cCcHHHH
Q 012879 364 EQAEKTALGIPSEITDVVVWRTLLGACSFH----GNVEMGERVTRKILEMERGYGGDYVLMYNILAGV-GR--FGDAERL 436 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~--~~~a~~~ 436 (454)
+.+...+.+.... -+......+.+.|..- .+++.|...+..+.+.+ ......++..+.+- |- +..|.++
T Consensus 456 ~~~~~~~~~a~~~-g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQ-GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hHHHHHHHHHHhc-cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 4555555554443 3444445555554432 35788888888887766 44444555555332 11 4566666
Q ss_pred HHHHhhc
Q 012879 437 RRVMDER 443 (454)
Q Consensus 437 ~~~~~~~ 443 (454)
+++....
T Consensus 532 ~~~~~~~ 538 (552)
T KOG1550|consen 532 YDQASEE 538 (552)
T ss_pred HHHHHhc
Confidence 6665553
No 364
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=81.32 E-value=46 Score=30.87 Aligned_cols=96 Identities=8% Similarity=-0.017 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 394 (454)
..|+.-|...|+..+|.+.++++-- .+-....++.+++.+..+.|+-...+.++++.-.. ...|-+.+-++|-+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s--glIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS--GLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CceeHHHhhhhhhhhh
Confidence 3456666666777777666666521 22233556666777777777666555555554443 4445555555554432
Q ss_pred --------ChhHHHHHHHHHHHhhcCCC
Q 012879 395 --------NVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 395 --------~~~~A~~~~~~~~~~~~~~~ 414 (454)
++..|.+.|+..++....+.
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 23445555555555544443
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.93 E-value=23 Score=30.56 Aligned_cols=86 Identities=8% Similarity=-0.125 Sum_probs=39.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh----
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS---- 322 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 322 (454)
-|.+++..+++.+++...-+--+. +-.......-|-.|.+.+++..+.++-..-.+..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 355556666666655544333322 11223333444455566666655555555444211112223444444332
Q ss_pred -cCCChHHHHHHH
Q 012879 323 -HGGLVEEGLNFF 334 (454)
Q Consensus 323 -~~~~~~~a~~~~ 334 (454)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 345666665554
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.03 E-value=74 Score=32.45 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=116.9
Q ss_pred HHhCCChhHHHHHHhhCCC----CCch-------hHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CCcchHHHHH
Q 012879 119 YVSLGFLKDSSKLFDEMPE----RNLV-------TWNVMIT-GLVKWGELEFARSLFEEMPC--------RNVVSWTGII 178 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~----~~~~-------~~~~ll~-~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~ 178 (454)
.....++++|..++.+... |+.. .|+.+-. .....|++++|.++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 4456788888888877642 3222 3444332 23467888888888765442 3456677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHH-----HHHHccCchhHH--HHHHHhhhhcCC--CC---chHHHH
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVL-----PAIWQNGDVKSC--QLIHGYGEKRGF--TA---FDIRVL 246 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a--~~~~~~~~~~~~--~~---~~~~~~ 246 (454)
.+..-.|++++|..+..+..+. .-.-+...+.... ..+...|+...+ ...+........ .| +-..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999888877664 2233443333222 234566633322 222333222210 11 122344
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHhhhcCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----cHHHHHHH
Q 012879 247 NCLIDTYAKC-GCIFSASKLFEDISVERKNLV----SWTSIISGFAMHGMGKEAVENFGRMQKVGLKP----NRVTFLSV 317 (454)
Q Consensus 247 ~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l 317 (454)
..++.++.+. +...++..-+.-.....|... .+..|+......|+.++|...++++......+ +..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555541 122222222222222223221 22356777888999999999998887632222 22222222
Q ss_pred H--HHHhcCCChHHHHHHHHH
Q 012879 318 L--NACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 318 ~--~~~~~~~~~~~a~~~~~~ 336 (454)
+ ......|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 2 223456787777766655
No 367
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.00 E-value=73 Score=32.41 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=42.8
Q ss_pred HHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChH
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
+=+.|...|++++|+++-+.-+..-..++..-...|.+.+++..|-+++.++. ..+..+.--+....+.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH
Confidence 33567788888888877655411111233344456777788888888888773 33444444555555555
No 368
>PRK12798 chemotaxis protein; Reviewed
Probab=79.93 E-value=50 Score=30.44 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=102.7
Q ss_pred cCChhHHHHHHHHhhhc--CCChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCcH----HHHHHHHHHHhcCCChH
Q 012879 256 CGCIFSASKLFEDISVE--RKNLVSWTSIISGFA-MHGMGKEAVENFGRMQKVGLKPNR----VTFLSVLNACSHGGLVE 328 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~ 328 (454)
.|+..++.+.+..+... .+....+-.|+.+-. ...++.+|+++|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57777777777776654 234555666665443 355777888888776542 2322 23333344556778888
Q ss_pred HHHHHHHHHHHhcCCCCChhHH-HHHHHHHHhcC---ChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHY-GCLIDMLGRAG---RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
++..+-.....++...|-..-| ..+..++.+.+ ..+.-..++..|... -....|..+...-.-.|+.+-|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~-~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPE-RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCch-hHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8777766666654444433222 23333344333 233444444444432 124577777778888888888888888
Q ss_pred HHHHhhcCCCCcHHHHHHHHHh-----cCCcCcHHHHHHHHhh
Q 012879 405 KILEMERGYGGDYVLMYNILAG-----VGRFGDAERLRRVMDE 442 (454)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~ 442 (454)
++...... ...-...+..|.. ..+++++.+.+..+..
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 88877643 2222223333322 2445555555555443
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.48 E-value=3.4 Score=28.78 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=40.0
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcH
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 433 (454)
|...-..+...+...|++++|++.+-++++.++. +...-..++.++.-.|.-+..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 5567777888889999999999999999988776 455667888888888876543
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.28 E-value=15 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLI 354 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (454)
+..+-++.+....+.|++......+++|.+.+|+..|.++|+-++.. ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44555555666667788888888888888888888888888877664 223333454444
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=41 Score=29.11 Aligned_cols=163 Identities=13% Similarity=0.012 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc------CCChhhHHHHH-HHHHhcCChhHHHHHHHHHHh----CCCCCcHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE------RKNLVSWTSII-SGFAMHGMGKEAVENFGRMQK----VGLKPNRVT 313 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~ 313 (454)
.-..++..+.+.|.+.+|+.+...+... +++..+...+- ..|....+..++..-+...+. .=++|-...
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa 206 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQA 206 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHH
Confidence 3356788899999999999988766544 34444333222 344444455544444433322 113443333
Q ss_pred HHHHHHH--HhcCCChHHHHHHHHHHHHhcC-CCCChhHHHHH---HHHHHhcCChHHHHHHHhcCCCC----CCcHhHH
Q 012879 314 FLSVLNA--CSHGGLVEEGLNFFDKMVEECE-VLPDIKHYGCL---IDMLGRAGRLEQAEKTALGIPSE----ITDVVVW 383 (454)
Q Consensus 314 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~ 383 (454)
---++.+ .|...++..|..+|-+..+.+. .+.|......+ +-.-.-.++.++...+++.-... .......
T Consensus 207 ~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am 286 (421)
T COG5159 207 QLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAM 286 (421)
T ss_pred HHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHH
Confidence 3334433 3556678888888888776321 23333333222 22222345555555555432211 1123333
Q ss_pred HHHHHHHHcC--CChhHHHHHHHHHH
Q 012879 384 RTLLGACSFH--GNVEMGERVTRKIL 407 (454)
Q Consensus 384 ~~l~~~~~~~--g~~~~A~~~~~~~~ 407 (454)
..+..++... .+++.|+.-++.=+
T Consensus 287 ~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 287 LAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred HHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 4444444332 34555555554433
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.77 E-value=43 Score=28.99 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
.++.....+...|.+.|++.+|...|-.-.. ++...+..++......|...+ ++...-..++.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--~~~~~~~~ll~~~~~~~~~~e--------------~dlfi~RaVL~- 150 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD--PSAFAYVMLLEEWSTKGYPSE--------------ADLFIARAVLQ- 150 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--HHHHHHHHHHHHHHHHTSS----------------HHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC--hhHHHHHHHHHHHHHhcCCcc--------------hhHHHHHHHHH-
Confidence 4788889999999999999999887765443 333333223322222232222 22333333333
Q ss_pred HhcCCChHHHHHHHHHHHHh
Q 012879 321 CSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~ 340 (454)
|...++...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 44567888888888777654
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.51 E-value=3.8 Score=21.40 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=22.6
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888888888888877777777766544
No 374
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.39 E-value=59 Score=30.38 Aligned_cols=233 Identities=11% Similarity=-0.038 Sum_probs=139.1
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHH
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
+.++...| ..+...+....... ++...+.....++....+......+.+.+..++..+......++.+.++.....
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 66666777 45677666665433 333444444444443333333566666666777778888899999888888777
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 161 SLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
.+...+..+++......+.++...+. .+...+....+ .+|...-...+.++...++.+..-. +..+...
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~a~~~-L~~al~d---- 189 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT----HEDALVRAAALRALGELPRRLSEST-LRLYLRD---- 189 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc----CCCHHHHHHHHHHHHhhccccchHH-HHHHHcC----
Confidence 77777776777666566666655442 23344444443 4677777777777777776544443 3333332
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHH-hhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFED-ISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.++.+-..-+.+....|. ..|...+.. ... ++......+...+...| .+++...+..+.+. + .+-...+.
T Consensus 190 ~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~--~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~--~vr~~a~~ 260 (410)
T TIGR02270 190 SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL--EGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---A--ATRREALR 260 (410)
T ss_pred CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc--cCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---h--hhHHHHHH
Confidence 277777777777888887 566665555 333 34333333333333333 34667666666653 1 25556667
Q ss_pred HHhcCCChHHHHHHHHHH
Q 012879 320 ACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~ 337 (454)
++.+.|+...+.-+.+.|
T Consensus 261 AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHcCCcchHHHHHHHh
Confidence 777778776655555544
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.24 E-value=14 Score=31.74 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=58.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHH-
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEEC-EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACS- 391 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~- 391 (454)
.=|+++...+++.++..+.-+.-+.. .++| .+...-|-.|.+.|.+..+.++-..-... +-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34688889999988887665554431 2333 34444556688999999888877766555 223445777666554
Q ss_pred ----cCCChhHHHHHH
Q 012879 392 ----FHGNVEMGERVT 403 (454)
Q Consensus 392 ----~~g~~~~A~~~~ 403 (454)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 469999998887
No 376
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.23 E-value=10 Score=28.48 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 398 MGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 398 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
.+.++|..|...+.. .+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888888888887766 445677888888888999999888865
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.15 E-value=51 Score=29.59 Aligned_cols=143 Identities=10% Similarity=-0.010 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh---cCChHHHHHHH
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR---AGRLEQAEKTA 370 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 370 (454)
.-+.++++.++.+. -+......++..+.+..+.++..+.|+.+... .+-+...|...++.... .-.+++...+|
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34445555555421 23444445555555555555555566665553 11234444444433322 11233333333
Q ss_pred hcCC-------CC-------CCc-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 371 LGIP-------SE-------ITD-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 371 ~~~~-------~~-------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
.+.. .. .++ ..++..+...+...|..+.|..+++-+++.+.-.|.....-- ..
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~--------~~ 197 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSS--------FS 197 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccccccc--------HH
Confidence 2221 11 011 123344445566889999999999999998775333222111 11
Q ss_pred cHHHHHHHHhhccccc
Q 012879 432 DAERLRRVMDERNAFK 447 (454)
Q Consensus 432 ~a~~~~~~~~~~~~~~ 447 (454)
+..+.|+.+.+.++.+
T Consensus 198 ~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 198 ERLESFEEFWESEVPR 213 (321)
T ss_pred HHHHHHHHHhCcCCCC
Confidence 5556666666665544
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.83 E-value=5.1 Score=35.13 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=63.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---CC--cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSE---IT--DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
.+-|.+..++..|...|.+.+.. .| +.+.|+.-..+-...|++..|+.=...++..+|.+...|..-+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34467778888888888776655 23 34566666666667788888888888888888888888888888888888
Q ss_pred CcCcHHHHHHH
Q 012879 429 RFGDAERLRRV 439 (454)
Q Consensus 429 ~~~~a~~~~~~ 439 (454)
++.+|....++
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 86666655544
No 379
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.51 E-value=67 Score=32.00 Aligned_cols=223 Identities=12% Similarity=-0.014 Sum_probs=94.8
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCC-------hHHHHHHHHHHHHccCCCCChh
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMP---CRNVVSWTGIIDGYTRMNR-------SNEALALFRKMVACEYTEPSEI 208 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 208 (454)
+....-.+|-.|.++|++++|.++..... +.....+...+..|....+ -++...-|++..+. ....|+
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~-~~~~Dp- 187 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN-STDGDP- 187 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-H-
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCh-
Confidence 33444567788899999999999994443 2445667777788777533 23455556655543 111133
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHhcCC---------hhHHHHHHHHhhhcCCC-hh
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGC---------IFSASKLFEDISVERKN-LV 277 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~-~~ 277 (454)
|...+-...-..+. ...-.. .+.. .+...|-.|.-.-..... +++-.+.+.+.-+..-+ ..
T Consensus 188 -yK~AvY~ilg~cD~--~~~~~~-----~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~ 259 (613)
T PF04097_consen 188 -YKRAVYKILGRCDL--SRRHLP-----EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGS 259 (613)
T ss_dssp -HHHHHHHHHHT--C--CC-S-T-----TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred -HHHHHHHHHhcCCc--cccchH-----HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccch
Confidence 22222221111111 000000 0011 122334333222222211 11222222222221101 11
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
..-.....+.-.|+++.|++.+-+ ..+...+.+.+...+..|.-.+-..... ..+.....-.|...-+..||..|
T Consensus 260 ~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 260 NPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp ----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 122334566778999999999877 2234556666666665553322222211 22222101112225677888888
Q ss_pred Hh---cCChHHHHHHHhcCCCC
Q 012879 358 GR---AGRLEQAEKTALGIPSE 376 (454)
Q Consensus 358 ~~---~g~~~~A~~~~~~~~~~ 376 (454)
.+ ..++.+|.+++--+...
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHhccCHHHHHHHHHHHHHc
Confidence 85 57888999988877665
No 380
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.49 E-value=23 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.394 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887766
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.48 E-value=1.2 Score=40.89 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=61.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
+.-+...++++.|..++..+++. .|+-..| ..=..++.+.+++..|+.=+.++.+..|. ...|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34455667788888888888753 5654333 33336777888888888777777666333 3344444555666667
Q ss_pred hhHHHHHHHHHHHhhcCCCC
Q 012879 396 VEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~ 415 (454)
+.+|...|+......|.++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 77777777777777776553
No 382
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.66 E-value=44 Score=28.07 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=13.2
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 012879 287 AMHGMGKEAVENFGRMQKVGL 307 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~ 307 (454)
+..+++.+|+++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445667777777777655433
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.50 E-value=50 Score=28.58 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH-HHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV-LMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~ 424 (454)
++.....+...|.+.|++.+|+..|-...+ |+...+..++......|...++ ..|. ..+--|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--~~~~~~~~ll~~~~~~~~~~e~---------------dlfi~RaVL~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTD--PSAFAYVMLLEEWSTKGYPSEA---------------DLFIARAVLQY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--HHHHHHHHHHHHHHHHTSS--H---------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCC--hhHHHHHHHHHHHHHhcCCcch---------------hHHHHHHHHHH
Confidence 456667788888888888888877654432 2333332233333333333222 2222 234445
Q ss_pred HhcCCcCcHHHHHHHHhhc
Q 012879 425 AGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~ 443 (454)
.-.|+...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5667777777777666654
No 384
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.77 E-value=33 Score=27.48 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=33.3
Q ss_pred hHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcC----C-------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCCh
Q 012879 260 FSASKLFEDISVERKNL-VSWTSIISGFAMHG----M-------GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV 327 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g----~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 327 (454)
++|+.-|++.....|+- .++..+..+|...+ + +++|.+.|++..+ ..|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~----- 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA----- 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH-----
Confidence 44444455555445643 45555555554322 2 3344444444444 3566666666665542
Q ss_pred HHHHHHHHHHHHh
Q 012879 328 EEGLNFFDKMVEE 340 (454)
Q Consensus 328 ~~a~~~~~~~~~~ 340 (454)
+|-++..++.+.
T Consensus 125 -kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 -KAPELHMEIHKQ 136 (186)
T ss_dssp -THHHHHHHHHHS
T ss_pred -hhHHHHHHHHHH
Confidence 344555555443
No 385
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.76 E-value=72 Score=30.06 Aligned_cols=347 Identities=12% Similarity=0.043 Sum_probs=175.8
Q ss_pred cCCcchHhHHHHHHHHcC-CCCC-----chhHHHHHHHHHhCC-ChhHHHHHHhhCCC--CCchhHH-----HHHHHHHh
Q 012879 87 LSHPNLGTQLHAVISKVG-FQSH-----VYVNTALVNMYVSLG-FLKDSSKLFDEMPE--RNLVTWN-----VMITGLVK 152 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~--~~~~~~~-----~ll~~~~~ 152 (454)
..+++.|..-++...... .-|+ -.++..|..+|.... .++.+..++++..+ .+...|. .++..+.-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 445666666665543311 1122 235556666776665 67777777776654 2222332 34555666
Q ss_pred cCCHHHHHHHHhhCCC-CCc--chHHHHHHHH------H---hcCChHHHHHHHHHHHHccCCCCChhh------H--Hh
Q 012879 153 WGELEFARSLFEEMPC-RNV--VSWTGIIDGY------T---RMNRSNEALALFRKMVACEYTEPSEIT------I--LA 212 (454)
Q Consensus 153 ~~~~~~A~~~~~~~~~-~~~--~~~~~l~~~~------~---~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--~~ 212 (454)
..|+..|.+++.--.+ .|. ..|..++..+ . +..+++.+.....++.+ ...+|... | ..
T Consensus 140 dkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~--n~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 140 DKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ--NISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHH
Confidence 7778888877644332 222 2333222211 1 22344555555666665 44444422 1 12
Q ss_pred HHHHHHccCchhHHHHHHHhhhhc---CCCC-----------chHHHHHHHH-------------HHHHhcCChhHHHHH
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKR---GFTA-----------FDIRVLNCLI-------------DTYAKCGCIFSASKL 265 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-----------~~~~~~~~l~-------------~~~~~~g~~~~a~~~ 265 (454)
-+..|...|+...+...++++... +..+ |++..+..+. ..-.-.|-+++|.++
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH
Confidence 223445667776666666655442 1110 1111111111 111123444444444
Q ss_pred HHHh-------hhcCCChhhHH--------HHHHHHHhcCChhHHHHHHHHHHhC-CCCCcHH-------HHHHHH-HHH
Q 012879 266 FEDI-------SVERKNLVSWT--------SIISGFAMHGMGKEAVENFGRMQKV-GLKPNRV-------TFLSVL-NAC 321 (454)
Q Consensus 266 ~~~~-------~~~~~~~~~~~--------~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~-------~~~~l~-~~~ 321 (454)
-+++ ++.+.....++ .++.+-.-.|++.+|++-+..|.+. .-.|.+. ....++ ..|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4433 33221222222 2222334478999999988888763 1233311 112223 334
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHH--HHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHH--------HHHHH--
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR--------TLLGA-- 389 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------~l~~~-- 389 (454)
+..|.++.|+..|....+. --.-|...+ ..+.-.|.+.|+.+.--++++.+... +..++. .++.+
T Consensus 378 ~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~--nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPL--NTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCC--CCCcchHHHHHHHHHHHHHHH
Confidence 5668889999888888765 222333222 34566788888888877887776654 211111 11222
Q ss_pred HHcCCChhHHHHHHHHHHHhhcC-C-----CCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEMERG-Y-----GGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
....+++.+|...+++.++.... + .-....+...+...|+..++.+.+.
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 24678999999999888876421 1 1122334555566677776665543
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.38 E-value=11 Score=25.30 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=5.2
Q ss_pred ChHHHHHHHHHHH
Q 012879 326 LVEEGLNFFDKMV 338 (454)
Q Consensus 326 ~~~~a~~~~~~~~ 338 (454)
+.++|+..|....
T Consensus 21 ~~~~Al~~W~~aL 33 (80)
T PF10579_consen 21 ETQQALQKWRKAL 33 (80)
T ss_pred hHHHHHHHHHHHH
Confidence 3334444444433
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.34 E-value=23 Score=24.31 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=38.6
Q ss_pred HhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHH
Q 012879 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 93 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
+.++++.+.+.|+ .+..-...+-.+-...|+.+.|.+++..+. ..+..|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4556666666663 233333333222234577777777777777 66667777777777766655543
No 388
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.04 E-value=76 Score=29.94 Aligned_cols=380 Identities=12% Similarity=-0.003 Sum_probs=195.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC-CcchHhHHHHHHHHcC--C
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS-HPNLGTQLHAVISKVG--F 105 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~--~ 105 (454)
.+-.-...++-.|. .+++.|...++....+.+.-+.. --.-..+++.|...+.... .+..+..++.+.++.. +
T Consensus 47 rt~LqLg~lL~~yT--~N~elAksHLekA~~i~~~ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 47 RTHLQLGALLLRYT--KNVELAKSHLEKAWLISKSIPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHcccccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 34445556666663 45555555555443221211110 0014457777777777666 7888888888887743 2
Q ss_pred C-CCchhHHHHHHHHHhCCChhHHHHHHhhCCC-CC--chhHHHHHHH------HHhcCCHHHHHHHHh---hCCC---C
Q 012879 106 Q-SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-RN--LVTWNVMITG------LVKWGELEFARSLFE---EMPC---R 169 (454)
Q Consensus 106 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~ll~~------~~~~~~~~~A~~~~~---~~~~---~ 169 (454)
+ ..-.....|+..+.-..|+..|.+++.-=.+ .| ...|..++.. ..-..+..++..+.. +|.+ +
T Consensus 123 p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~s 202 (629)
T KOG2300|consen 123 PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISS 202 (629)
T ss_pred chhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCC
Confidence 1 1112233466677778888888888654332 22 2233322222 222334444444443 3332 2
Q ss_pred Ccc------h-H-HHHHHHHHhcCChHHHHHHHHHHHHcc-----------------------CCCCChh----hHHhHH
Q 012879 170 NVV------S-W-TGIIDGYTRMNRSNEALALFRKMVACE-----------------------YTEPSEI----TILAVL 214 (454)
Q Consensus 170 ~~~------~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~----~~~~l~ 214 (454)
|.. . | +.-+..|...|+...+...++++.+.- ..-|... +|....
T Consensus 203 dk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv 282 (629)
T KOG2300|consen 203 DKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTV 282 (629)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHH
Confidence 221 1 1 122334556688877777777665420 0113322 232222
Q ss_pred HHHHccCchhHHHHHHHhhhhc----CCCCchHHHH--------HHHHHHHHhcCChhHHHHHHHHhhhc---CCC--hh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVL--------NCLIDTYAKCGCIFSASKLFEDISVE---RKN--LV 277 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--~~ 277 (454)
..-...|-+++|.++-+++... ...+....++ ..++.+-.-.|++.+|++-+.+|.+- -|. ..
T Consensus 283 ~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Ll 362 (629)
T KOG2300|consen 283 IHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLL 362 (629)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHH
Confidence 2223445555555554444332 1111112222 22333444579999999999888775 233 11
Q ss_pred -----hHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCcHHHH--HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 278 -----SWTSIISG-FAMHGMGKEAVENFGRMQKVGLKPNRVTF--LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 278 -----~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
....++.. ++..|.++.|..-|....+.--.-|...+ ..+...|.+.|+.+.-.++++.+-..+........
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQR 442 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHH
Confidence 12233333 34578899999988887654223333333 23445677777776666666655322111111111
Q ss_pred H-HH--HHHH--HHhcCChHHHHHHHhcCCCC--CCc-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 350 Y-GC--LIDM--LGRAGRLEQAEKTALGIPSE--ITD-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 350 ~-~~--l~~~--~~~~g~~~~A~~~~~~~~~~--~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
. +. ++.+ ....+++.+|...+.+-.+. .-| .-....|...+...|+..++.+..+-..+....
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 0 11 1122 23679999999988876654 111 112233445566788999998888877766554
No 389
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=74.94 E-value=43 Score=27.09 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcC----------------CChhhHHHHHHHHHhcCChhHHHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVER----------------KNLVSWTSIISGFAMHGMGKEAVENFG 300 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 300 (454)
+++..|-+.-++.+..++++.+.+.+ +--..-|.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34455555556666666666554430 112234555566667777777766665
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.92 E-value=75 Score=29.38 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHhcCChhHHHHHHHHhhhc-CCChh--hHHHHHHHHHh--cCChhHHHHHHHHHHh
Q 012879 252 TYAKCGCIFSASKLFEDISVE-RKNLV--SWTSIISGFAM--HGMGKEAVENFGRMQK 304 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~-~~~~~--~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 304 (454)
.+.+.+++..|.++|+.+... .++.. .+..+..+|.. .-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444667777777777776664 22222 33444444433 4556667666666554
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.83 E-value=1.2e+02 Score=31.51 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=20.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQ 58 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 58 (454)
-|..|+..|...|..++|+++|.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 46778888888888888888888775
No 392
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=1e+02 Score=30.94 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=90.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALV 116 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 116 (454)
-++.+.+.+.+++|++.-+... ..-.. ..-.......|..+.-.|+++.|-...-.|.. -+..-|..-+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~---~~~~~----~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V 430 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI---GNEER----FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWV 430 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc---CCccc----cchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHH
Confidence 4677888999999998877654 21111 00234566778888888999998888777753 2455666666
Q ss_pred HHHHhCCChhHHHHHHhhCCC-CCchhHHHHHHHHHhcCCHHHHHHHHhhCC-------------C-------CCcchHH
Q 012879 117 NMYVSLGFLKDSSKLFDEMPE-RNLVTWNVMITGLVKWGELEFARSLFEEMP-------------C-------RNVVSWT 175 (454)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-------------~-------~~~~~~~ 175 (454)
..+...++......++=.-.. -+...|..++..+.. .+...-.++...-. + .+...-.
T Consensus 431 ~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e 509 (846)
T KOG2066|consen 431 FKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLE 509 (846)
T ss_pred HHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHH
Confidence 666666665443322211111 355678888877776 33333333222211 0 1222334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
.|+..|...+++.+|+.++-...+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 477778888888888887766544
No 393
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.73 E-value=97 Score=30.58 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHH
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQL 57 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 57 (454)
+++.-|+ .+..+.-.|.++.|.+++...
T Consensus 147 ~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 147 HDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp GSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred cchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 3467787 677777889999999998544
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.52 E-value=7.9 Score=24.65 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=8.8
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRM 302 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m 302 (454)
+|.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.99 E-value=17 Score=25.34 Aligned_cols=52 Identities=25% Similarity=0.212 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC---cHhHHHHHHHHHHcCCCh
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT---DVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~ 396 (454)
.|...--.+...+...|++++|++.+-++....+ +...-..|+..+...|.-
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3456666777788888888888887777665522 233445555555544443
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.66 E-value=17 Score=29.69 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=12.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 344 LPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
.|++.+|..++.++...|+.++|.++.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.54 E-value=38 Score=25.38 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
.+.++|..|...|+-...+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778888887777666777888888888888888888888764
No 398
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.41 E-value=19 Score=24.73 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=38.2
Q ss_pred HHHhhCCCCCchhHHHHHHHHH---hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHH
Q 012879 130 KLFDEMPERNLVTWNVMITGLV---KWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEAL 191 (454)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (454)
++++.+.+.+..|..-.=..-+ ..|+.+.|.+++..+. ..+..|..++.++-..|+-+-|.
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3444444444444443333333 5577888888888888 77777888888887777655443
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.11 E-value=11 Score=30.92 Aligned_cols=53 Identities=6% Similarity=-0.019 Sum_probs=44.2
Q ss_pred cCCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHH
Q 012879 6 NSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQ 58 (454)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 58 (454)
....+++......+...+.-...|++.+|..++..+...|+.++|.+..+++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666666667766666667999999999999999999999999999987
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.05 E-value=67 Score=28.04 Aligned_cols=57 Identities=9% Similarity=0.144 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
.....|..+|.+.+|.++.++.+... +.+...+..+++.+...||--.+.+.++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33445566666666666666655542 3345555556666666666555555555443
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.75 E-value=31 Score=26.10 Aligned_cols=73 Identities=11% Similarity=-0.104 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCCC-CCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 344 LPDIKHYGCLIDMLGRAGR---LEQAEKTALGIPSE-ITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
.++..+--.+..++.+..+ ..+.+.+++++.+. .|+ ......|.-++.+.++++++.++.+..++..|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444555555666665544 34455667666642 332 2334456667788888888888888888887776543
No 402
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.39 E-value=59 Score=27.07 Aligned_cols=78 Identities=13% Similarity=-0.009 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-cCCCCChhHHHHHHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE-CEVLPDIKHYGCLIDM 356 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 356 (454)
|.+..++.+.+.+...+++...++-.+.+ +-|..+-..++..+|-.|++++|..-++-..+. ....+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555677788888888888888777653 224455566778888999999998877766542 1223345566666654
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.34 E-value=14 Score=25.97 Aligned_cols=51 Identities=6% Similarity=0.053 Sum_probs=27.0
Q ss_pred cCCChhHHHHHHHHHHHhhcCCC---------CcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 392 FHGNVEMGERVTRKILEMERGYG---------GDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+.||+..|.+.+.+......... .....++......|++++|...+++.++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666666555555544433311 1122345555666777777766666554
No 404
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.97 E-value=35 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 148 TGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
..+...|++++|..+.+.+..||...|.+|. -.+.|..+++..-+.++..+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 3455677777777777777667766665443 33556666666666566553
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.54 E-value=13 Score=26.06 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+.......|++++|...++++++.-..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777766544
No 406
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.65 E-value=1.2e+02 Score=29.97 Aligned_cols=42 Identities=7% Similarity=0.115 Sum_probs=19.7
Q ss_pred hhHHHHHHhhCCCCC-chhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012879 125 LKDSSKLFDEMPERN-LVTWNVMITGLVKWGELEFARSLFEEMP 167 (454)
Q Consensus 125 ~~~a~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 167 (454)
.+.-.++++++.. . ...+..++++....|......-+.+.+.
T Consensus 325 ~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~ 367 (574)
T smart00638 325 EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIK 367 (574)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444433 2 3445555555555555555444444444
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.62 E-value=68 Score=27.07 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
....-++.|.+.-++.-|-..++++.+ |-. -...+--|.+..+.+--.++.+-....++.-+..-...++ +...
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE--PIQ--SRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE--PIQ--SRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh--hHH--hhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 344445556665555555555555544 211 1112222333333333333333334444554444444444 4456
Q ss_pred CChHHHHHHHHHHHHh
Q 012879 325 GLVEEGLNFFDKMVEE 340 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~ 340 (454)
||..+|...++.-...
T Consensus 206 GDMRQalNnLQst~~g 221 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNG 221 (333)
T ss_pred chHHHHHHHHHHHhcc
Confidence 7777776666665543
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.22 E-value=93 Score=28.51 Aligned_cols=156 Identities=10% Similarity=-0.034 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH-
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL- 353 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 353 (454)
.+.++-.+...+...|+...|.+++++..-.--..-...|..+.. -...|.. ++ .+...-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~-~~~~g~~--------rL--~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS-NLTSGNC--------RL--DYRRPENRQFFLALF 107 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccCcc--------cc--CCccccchHHHHHHH
Confidence 556667777778888888888888877642100000001100000 0001110 00 01122244444443
Q ss_pred --HHHHHhcCChHHHHHHHhcCCCCCC--cHhHHHHHHHHHH-cCCChhHHHHHHHHHHHhhc-----CCCCcHHHHHHH
Q 012879 354 --IDMLGRAGRLEQAEKTALGIPSEIT--DVVVWRTLLGACS-FHGNVEMGERVTRKILEMER-----GYGGDYVLMYNI 423 (454)
Q Consensus 354 --~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~ 423 (454)
|..+.+.|.+..|.++.+-+....| |+......|+.|+ +.++++--+++.+....... .-|..-.+.+-+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 5677889999999999988887733 5666666777765 67888888888887655211 123344566677
Q ss_pred HHhcCCc---------------CcHHHHHHHHh
Q 012879 424 LAGVGRF---------------GDAERLRRVMD 441 (454)
Q Consensus 424 ~~~~g~~---------------~~a~~~~~~~~ 441 (454)
+...++. +.|.+.+.+..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 7777777 67776665543
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=69.03 E-value=86 Score=28.03 Aligned_cols=153 Identities=13% Similarity=-0.045 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHhCCC----CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 012879 292 GKEAVENFGRMQKVGL----KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 367 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (454)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... .++......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 3456666666665311 23344444555555666665554444444443 235555566677776666766666
Q ss_pred HHHhcCCCC--CCcHhHHHHHHHHHHcCCCh--hHHHHHHHHHH----HhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 368 KTALGIPSE--ITDVVVWRTLLGACSFHGNV--EMGERVTRKIL----EMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 368 ~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
++++..... .+... ...++.++...+.. +.+.+.+..-. +.-+........++..+......++-.+.+++
T Consensus 222 ~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 666655443 12222 23333344422222 44444443322 22222333344444444444455555666666
Q ss_pred HhhcccccCC
Q 012879 440 MDERNAFKVP 449 (454)
Q Consensus 440 ~~~~~~~~~~ 449 (454)
+.+....+.|
T Consensus 301 f~~~~~~~~~ 310 (324)
T PF11838_consen 301 FFEDKPKPPP 310 (324)
T ss_dssp HHHHHCTCCC
T ss_pred HHhhCcCCCh
Confidence 6644433333
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.92 E-value=21 Score=26.91 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=32.5
Q ss_pred CChhhHHhHHHHHHccCc---hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 205 PSEITILAVLPAIWQNGD---VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
++..+-..+..++.++.+ ..+...+++.+.+...+........-|.-++.+.++++.++++.+.+.+..|
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 444444444444444333 3344555555554221221222333344455566666666666665555444
No 411
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.91 E-value=25 Score=33.74 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=46.2
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|+...|...+...... ...-..+....+.....+.|-...|..++.+..... ...+.++..+.++|....++++|+
T Consensus 620 ~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHH
Confidence 45666666655555432 212223344455555555555555555555555442 224455555666666666666666
Q ss_pred HHHHHhhhcCC
Q 012879 264 KLFEDISVERK 274 (454)
Q Consensus 264 ~~~~~~~~~~~ 274 (454)
+.|++..+..|
T Consensus 697 ~~~~~a~~~~~ 707 (886)
T KOG4507|consen 697 EAFRQALKLTT 707 (886)
T ss_pred HHHHHHHhcCC
Confidence 66666555433
No 412
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.89 E-value=18 Score=24.30 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=8.0
Q ss_pred HHHHHHHHhcCChhHHHH
Q 012879 247 NCLIDTYAKCGCIFSASK 264 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~ 264 (454)
..++.+|+.-|++.++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.73 E-value=97 Score=28.51 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=11.4
Q ss_pred HHhHHHHHHccCchhHHHHHHHh
Q 012879 210 ILAVLPAIWQNGDVKSCQLIHGY 232 (454)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~ 232 (454)
+.-+...|...|+++.|.+.|.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhh
Confidence 34444444555555555555554
No 414
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.49 E-value=55 Score=27.77 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=51.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHh------CCCCCcHH-----------HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQK------VGLKPNRV-----------TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~------~~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
.+-+.+.|++.+|..-|.+.+- ..-+|... .+....+++...|++-++++.-.++... .+-
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~--~~~ 262 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH--HPG 262 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc--CCc
Confidence 3446667777777777776532 11123221 1222233444556777777766666652 334
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
+...|-.-..+.+..=+.++|..-|......
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4555555555555566667777766666665
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.04 E-value=22 Score=26.38 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLL 387 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~ 387 (454)
+..+-+..+..- .+.|++.+...-++++.+.+++..|.++|+.++.+.++. ..|-.++
T Consensus 67 EvrkglN~l~~y-DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDY-DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhcc-ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 444555555443 778888888888888888888888888888887773332 2354444
No 416
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.76 E-value=7.7 Score=32.18 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 357 LGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
..+.++.+.|.+++.++....| ....|-.+...--+.|+.+.|.+.+++.++.+|.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 4456777777777777777633 44567777777777777777777777777777775543
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.75 E-value=75 Score=28.36 Aligned_cols=66 Identities=15% Similarity=0.029 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhc-----CCChhhHHH--HHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHH
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVE-----RKNLVSWTS--IISGFAMHGMGKEAVENFGRMQK-----VGLKPNRV 312 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~ 312 (454)
..++...-+.++.++|.++++++.+. .|+.+.|.. +..++...|+..++.+++.+..+ .|++|+.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33444445555666777777666554 355554433 34455566777777777766665 45666443
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.16 E-value=1.4e+02 Score=29.81 Aligned_cols=44 Identities=7% Similarity=0.063 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCC---CCCchhHHHHHHHHHhc
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMP---ERNLVTWNVMITGLVKW 153 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~ 153 (454)
..+|. +|-.|.++|++++|.++..+.. +.....+-..+..|+..
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 34454 6677889999999999984433 23445566666666554
No 419
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.90 E-value=94 Score=27.66 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=10.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHH
Q 012879 316 SVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
.....||+.||.+.|.+.+...
T Consensus 109 ~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555544443
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.89 E-value=46 Score=24.12 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998887
No 421
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.34 E-value=58 Score=25.09 Aligned_cols=80 Identities=13% Similarity=0.244 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcC-------CChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVER-------KNLVSWTSIISGFAMHGM-GKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
..+.++......+++.....+++.+.... .+...|.+++.+..+..- ---+..+|.-|++.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 44566666666677777777766664331 244456677766655444 3345566666666666777777777
Q ss_pred HHHHHhcC
Q 012879 317 VLNACSHG 324 (454)
Q Consensus 317 l~~~~~~~ 324 (454)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77666543
No 422
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=65.72 E-value=1.2e+02 Score=28.42 Aligned_cols=231 Identities=11% Similarity=0.025 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 147 ITGLVKWGELEFARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 147 l~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
+.++...| +.+...+-... .++...+.....++.. ++-..+...+-+... .++..+-....+++...++..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~-~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~~ 117 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLA-QEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGRQ 117 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhc-cCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCchH
Confidence 66777777 45555544433 2444444443334332 222232333333332 245556777777777777766
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
....+...+... ++.+....+.++...+. .+...+....+ .++..+-...+.++...+.. .+...+..+..
T Consensus 118 a~~~L~~~L~~~-----~p~vR~aal~al~~r~~--~~~~~L~~~L~-d~d~~Vra~A~raLG~l~~~-~a~~~L~~al~ 188 (410)
T TIGR02270 118 AEPWLEPLLAAS-----EPPGRAIGLAALGAHRH--DPGPALEAALT-HEDALVRAAALRALGELPRR-LSESTLRLYLR 188 (410)
T ss_pred HHHHHHHHhcCC-----ChHHHHHHHHHHHhhcc--ChHHHHHHHhc-CCCHHHHHHHHHHHHhhccc-cchHHHHHHHc
Confidence 665554444221 44555555555554332 12233333332 35666666666666666654 33333444433
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR 384 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 384 (454)
.+|...-..-+.+....|. .+|......+... ++......+...+...|. +++.+.+..+... ++ +-.
T Consensus 189 ---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~----~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d-~~--vr~ 256 (410)
T TIGR02270 189 ---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL----EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA-AA--TRR 256 (410)
T ss_pred ---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc----cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC-hh--hHH
Confidence 2455555666666677777 5565555553332 232233333333333333 3666666666654 22 555
Q ss_pred HHHHHHHcCCChhHHHHHHHH
Q 012879 385 TLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~ 405 (454)
..+.++.+.|+..-+.-+.+.
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~ 277 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEA 277 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHH
Confidence 666777777777655444443
No 423
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.16 E-value=1.2e+02 Score=28.40 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHHHccCCCCChhhHHhHHHH
Q 012879 173 SWTGIIDGYTR---MNRSNEALALFRKMVACEYTEPSEITILAVLPA 216 (454)
Q Consensus 173 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (454)
.+..++.++.+ .++++.|+.++..|.+. |..|....-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~-G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEA-GEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 34445555544 36777788888888776 655554443333333
No 424
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.98 E-value=1.1e+02 Score=27.48 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=66.9
Q ss_pred hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHh---cCChhHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAM---HGMGKEAVENF 299 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~~ 299 (454)
+.-..+++++.+. .|.+......++..+.+..+.++..+-++++....| +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3344566666655 344666666666666666666666666777666655 45556555554433 22344444444
Q ss_pred HHHHh------CCC------CCc--H---HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC
Q 012879 300 GRMQK------VGL------KPN--R---VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD 346 (454)
Q Consensus 300 ~~m~~------~~~------~p~--~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (454)
.+..+ .+. .++ . ..+..+...+.++|-.+.|..+++.+.+-+-+.|.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 44322 111 011 1 12223333445789999999999998887333444
No 425
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.53 E-value=1.4e+02 Score=29.49 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=24.3
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHH
Q 012879 160 RSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHG 231 (454)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (454)
..++.+.+-.+...-..++..|.+.|-.+.|.++.+.+-.. - ....-|...+..+.+.|+...+..+..
T Consensus 394 ~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~--~~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 394 EELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR-L--LKEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH-------------
T ss_pred HHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344443344444455556666666666666666555332 1 112234444444445555444443333
No 426
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.41 E-value=93 Score=26.39 Aligned_cols=85 Identities=7% Similarity=-0.061 Sum_probs=45.3
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCCh-hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 181 YTRMNRSNEALALFRKMVACEYTEPSE-ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
|.....++.|+..|.+.+. +.|+. ..|..-+-++.+..+++.+.+--.+..+. .|.......-+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 3344456666666655553 24444 34445555556666666666555555553 343334444455555555666
Q ss_pred hHHHHHHHHhh
Q 012879 260 FSASKLFEDIS 270 (454)
Q Consensus 260 ~~a~~~~~~~~ 270 (454)
+.|+..+.+..
T Consensus 95 ~eaI~~Lqra~ 105 (284)
T KOG4642|consen 95 DEAIKVLQRAY 105 (284)
T ss_pred cHHHHHHHHHH
Confidence 66666666553
No 427
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=63.33 E-value=23 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=10.8
Q ss_pred HHHHHHhcCCcCcHHHHHHH
Q 012879 420 MYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~ 439 (454)
-+.++...|+.++|...|+.
T Consensus 106 ra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 106 RAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHH
Confidence 34455556666666665543
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.11 E-value=1.1e+02 Score=27.22 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=67.3
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc------CCChhhHHHHHHH-HHhcCChhHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE------RKNLVSWTSIISG-FAMHGMGKEA 295 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~l~~~-~~~~g~~~~A 295 (454)
.++-.+..+...+.-....-...+......||+.|+-+.|.+.+.+..+. +-|+..+.+-+.. |....-+.+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33334444444443222224556777888999999999999998876654 2354444443332 3333334555
Q ss_pred HHHHHHHHhCCCCCcH----HHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 296 VENFGRMQKVGLKPNR----VTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 296 ~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
++..+.+.+.|-..+. .+|..+- |....++.+|-.+|-+....
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 5555666666654443 3444443 34456888888888777653
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.06 E-value=37 Score=21.61 Aligned_cols=34 Identities=12% Similarity=-0.099 Sum_probs=27.9
Q ss_pred hhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHH
Q 012879 25 NSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQ 58 (454)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 58 (454)
+...+|-.-.-.+|.+|.+.|++++|.+..+.+.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334777778889999999999999999999886
No 430
>PF15469 Sec5: Exocyst complex component Sec5
Probab=62.77 E-value=37 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.-+.-|.+.|+++.+...|.++...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3445556667777777777766654
No 431
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.50 E-value=56 Score=23.57 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=47.0
Q ss_pred chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
..++|..+.+.+...+.. ...+--+-+..+.+.|+|++| +........||...|.+|. -.+.|-.+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 456777777777766431 333444455667778888888 3333333346766665553 3466777777777777
Q ss_pred HHhCCCCCcHHHH
Q 012879 302 MQKVGLKPNRVTF 314 (454)
Q Consensus 302 m~~~~~~p~~~~~ 314 (454)
+...| .|....|
T Consensus 95 la~~g-~~~~q~F 106 (116)
T PF09477_consen 95 LASSG-SPELQAF 106 (116)
T ss_dssp HCT-S-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 76654 3333333
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=62.24 E-value=40 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 397 EMGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++..++|..|...+.+ ....|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467788888777666 44567778888888899998888876
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.85 E-value=64 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQ 59 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 59 (454)
|...|.. ++.|...|++.+|++-|+.=..
T Consensus 10 d~i~~ki-~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 10 DFIAFKI-CRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HhHHHHH-HHHHHhCCCHHHHHHHHHHHHH
Confidence 4444443 4778888888888888876543
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.80 E-value=36 Score=31.47 Aligned_cols=55 Identities=18% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-------CC--cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-------IT--DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-------~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
|++..+-.|++..|+++++.+.-. .| .+.++..+.-+|...+++.+|++.|...+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554443221 11 23344455555555555555555555443
No 435
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=49 Score=32.25 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=61.7
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCc------HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 357 LGRAGRLEQAEKTALGIPSE-ITD------VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~-~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
..+..++..+.++|..-... ..| ...+..|--+|.+..+.|.|.++++++.+.+|.++-.-..+..+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34567777777777643222 111 23456677778888889999999999988888877777777888888888
Q ss_pred cCcHHHHHHHHhh
Q 012879 430 FGDAERLRRVMDE 442 (454)
Q Consensus 430 ~~~a~~~~~~~~~ 442 (454)
-++|...+.....
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888887766544
No 436
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.46 E-value=26 Score=29.20 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 418 VLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
..++....+.|+.++|.+.|.++...+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345555556666666666666655543
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.85 E-value=23 Score=21.66 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=15.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
+.-++.+.|++++|.+..+.+.+..|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344555666666666666666665554
No 438
>PRK10941 hypothetical protein; Provisional
Probab=60.24 E-value=1.2e+02 Score=26.49 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.+.-.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 344455566666666666666666542 1233333333444556666666666666665554444544444444433
No 439
>PF15469 Sec5: Exocyst complex component Sec5
Probab=60.12 E-value=90 Score=25.17 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=10.5
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 012879 283 ISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~ 303 (454)
+.-+.+.|+++.++..|.+..
T Consensus 93 L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHH
Confidence 344445555555555554443
No 440
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.77 E-value=61 Score=23.09 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=50.5
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRM 302 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 302 (454)
.++|..+-+.+...+.. ...+--+-+..+...|+|++|..+.+.+.- ||...|.+|.. .+.|..+++..-+.+|
T Consensus 21 HqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~--pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKLCY--PDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCCCC--chHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45666666666554311 222233334566778888888888777753 77777766544 3556666666666677
Q ss_pred HhCCCCCcHHHH
Q 012879 303 QKVGLKPNRVTF 314 (454)
Q Consensus 303 ~~~~~~p~~~~~ 314 (454)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 6665 3444444
No 441
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.42 E-value=1.2e+02 Score=26.23 Aligned_cols=135 Identities=10% Similarity=0.077 Sum_probs=77.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-CcHHHHHHHH-HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLK-PNRVTFLSVL-NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
.+.+....+.|+++-++.+..+.. -+...|...+ ... ..+..+=+++++++.+. .+-+-.+|..-=......|+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l--~~dL~~El~~l~eI~e~--npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL--MSDLNKELEYLDEIIED--NPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHhcC
Confidence 345566777888888887765311 0122232222 222 13456666777777764 23344444332222333455
Q ss_pred hH-HHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 363 LE-QAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 363 ~~-~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
+. .=+++.+.|... .-+-.+|..--.++...++++.-+.+..++++.+..+-.+|+.-.-.
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 55 556666666654 33455666666677777778888888888888777776677654333
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.01 E-value=23 Score=30.94 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=29.6
Q ss_pred CChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 274 KNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 274 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
||.. -|+..|..-.+.||+++|+.++++..+.|+.--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3443 356777788888888888888888888776654455543
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.00 E-value=1.1e+02 Score=25.81 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=10.3
Q ss_pred HHHHHHhCCChhHHHHHHhhC
Q 012879 115 LVNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~ 135 (454)
++.++...|+.+.|..+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555443
No 444
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.76 E-value=1.3e+02 Score=26.46 Aligned_cols=187 Identities=12% Similarity=-0.056 Sum_probs=0.0
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChhH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAM----HGMGKE 294 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 294 (454)
..+++..+...+......+........-...........+...|..+|....+. ........|...|.. ..+..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC-------ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH----HhcCCh
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGG-------LVEEGLNFFDKMVEECEVLPDIKHYGCLIDML----GRAGRL 363 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 363 (454)
|..++++..+.|..+...+...+...+..-. +...|...|..+... + +......+...| .-..+.
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCH
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHHcCC---------------ChhHHHHHHHHHHHhhcC
Q 012879 364 EQAEKTALGIPSEITDVVVWRTLLGACSFHG---------------NVEMGERVTRKILEMERG 412 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 412 (454)
.+|..+|....+... ......+. .+...| +...|...+......++.
T Consensus 208 ~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 208 KKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
No 445
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.70 E-value=1.7e+02 Score=27.89 Aligned_cols=409 Identities=11% Similarity=0.054 Sum_probs=199.7
Q ss_pred CCchhHHHHHHHHhhhhh-hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 10 PNNITTQIHSHLLTTNSL-LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
+.+..++|..-.+....- ..|+-.|...+.-+-+.+.+.+.-.+|..|. ...+.+ | +...|.+. .-+-...
T Consensus 83 d~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l---~~Hp~~-~---dLWI~aA~-wefe~n~ 154 (568)
T KOG2396|consen 83 DDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAML---AKHPNN-P---DLWIYAAK-WEFEINL 154 (568)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCC-c---hhHHhhhh-hHHhhcc
Confidence 344445555444444433 3599999999988888888999999999998 444330 3 44444332 2233444
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHH---HH-hC-------C-ChhHH-HHHHhhC-----CCCCch--hHHHH--
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNM---YV-SL-------G-FLKDS-SKLFDEM-----PERNLV--TWNVM-- 146 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~-------g-~~~~a-~~~~~~~-----~~~~~~--~~~~l-- 146 (454)
+++.|..++..-++.+ +-++..|-...+. |+ +. | +.+.- .++-+.- ..++.. .++.-
T Consensus 155 ni~saRalflrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~ 233 (568)
T KOG2396|consen 155 NIESARALFLRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSV 233 (568)
T ss_pred chHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhc
Confidence 5889999988877754 3334444333322 11 00 0 00000 0000000 001100 00000
Q ss_pred -HHHHH---hcCCHHHHHHHHhhCCC---CCcchHHHHHHHHH-------------------hcCChHHHHHHHHHHHHc
Q 012879 147 -ITGLV---KWGELEFARSLFEEMPC---RNVVSWTGIIDGYT-------------------RMNRSNEALALFRKMVAC 200 (454)
Q Consensus 147 -l~~~~---~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~ 200 (454)
..... ..++..+ .+.+.+.. .++.+|..+..-.. ...+.+....+|++..+.
T Consensus 234 e~~~~~~~d~~kel~k--~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~ 311 (568)
T KOG2396|consen 234 ELSVAEKFDFLKELQK--NIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT 311 (568)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH
Confidence 00000 0011110 11111111 23334433322111 111223344566666542
Q ss_pred cCCCCChhhHHhHHHHHHccC------chhHHHHHHHhhhhcC-CCCchHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhc
Q 012879 201 EYTEPSEITILAVLPAIWQNG------DVKSCQLIHGYGEKRG-FTAFDIRVLNCLIDTYAKCGCI-FSASKLFEDISVE 272 (454)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 272 (454)
-|+...+...+..|...- .......+++...+.+ ..+.....|..+.-.++..... ..|..+..+...
T Consensus 312 ---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~- 387 (568)
T KOG2396|consen 312 ---LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR- 387 (568)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc-
Confidence 355555555555553322 2333344444444432 2233445555555555554432 223333323332
Q ss_pred CCChhhHHHHHHHHHhc-CChh-HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC-hHHH--HHHHHHHHHhcCCCCCh
Q 012879 273 RKNLVSWTSIISGFAMH-GMGK-EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-VEEG--LNFFDKMVEECEVLPDI 347 (454)
Q Consensus 273 ~~~~~~~~~l~~~~~~~-g~~~-~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~ 347 (454)
.+...|-.-++...+. .+.+ .-.+++..+...-..+....++... .|+ +... ..++..+.. -..|+.
T Consensus 388 -~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s--~~~~~~ 459 (568)
T KOG2396|consen 388 -DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS--VIGADS 459 (568)
T ss_pred -chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--hcCCce
Confidence 3444444444433322 1221 1122233333321222222333222 122 2111 123333333 234554
Q ss_pred hHH-HHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHH--cCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 348 KHY-GCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACS--FHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 348 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
.++ +.+++-+.+.|-..+|..++...... +|+...|..+|+.-. ..-+..-+.++++.|...-..++..|......
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 444 56788888999999999999998888 567788888876432 23347788899999887655788888888888
Q ss_pred HHhcCCcCcHHHHHHHHh
Q 012879 424 LAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~ 441 (454)
-...|+.+.+-.++-+..
T Consensus 540 e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hccCCCcccccHHHHHHH
Confidence 888899988877765443
No 446
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=58.27 E-value=58 Score=22.36 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
+...|..-++....... ++ .++|+.....|+..|+.+|..+++...-.=-.+...++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls~-eE-~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSA-EE-VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccCH-HH-HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55566666654443332 22 2889989999999999999999998877777888888888775
No 447
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=58.21 E-value=1.2e+02 Score=26.15 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC-----ChhhHHhHHHHH
Q 012879 143 WNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEP-----SEITILAVLPAI 217 (454)
Q Consensus 143 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 217 (454)
|-.++..|+|.=+...=..+|+....| ..+...|.+.|+.+.|-.++--+....+... +...-..++...
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 334444444444444444455444322 2355556666666666655555543322222 222333444444
Q ss_pred HccCchhHHHHHHHhhhh
Q 012879 218 WQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~ 235 (454)
...++++-+.++.+-+..
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKA 248 (258)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 444555555544444433
No 448
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.61 E-value=29 Score=23.76 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=15.6
Q ss_pred CChhHHHHHHhhCCCCCchhHHHHHHHHHhcCC
Q 012879 123 GFLKDSSKLFDEMPERNLVTWNVMITGLVKWGE 155 (454)
Q Consensus 123 g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 155 (454)
.+.+.+.++++.+...+..+|..+..++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 344444444444444444444444444444443
No 449
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.56 E-value=1.8e+02 Score=27.62 Aligned_cols=276 Identities=15% Similarity=0.035 Sum_probs=143.5
Q ss_pred hHHHHHHHHh--ccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHH--HHHhhCC----CCCc-------
Q 012879 76 TYSFLIRTCA--TLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSS--KLFDEMP----ERNL------- 140 (454)
Q Consensus 76 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~----~~~~------- 140 (454)
.|..+-.++. ..+.++...+.+..+...|.......+|..+..|.+.|....-. +-++.+. .|+.
T Consensus 17 ~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~ 96 (696)
T KOG2471|consen 17 NYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSL 96 (696)
T ss_pred hHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhh
Confidence 3455545544 45678999999999999888777778888888888888654322 2222211 1111
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCcc-hHHHHHHHHHhcCChHHHHHHH---HHHHHccCCC
Q 012879 141 -----VTWNVMITGLVKWGELEFARSLFEEMPC-------RNVV-SWTGIIDGYTRMNRSNEALALF---RKMVACEYTE 204 (454)
Q Consensus 141 -----~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------~~~~-~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~~ 204 (454)
.-|| ...+|.....+-.|+++...+.. .... ........+....+.++|+.++ .+|...+...
T Consensus 97 ~~~t~~~yn-~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 97 KQGTVMDYN-FAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hcchHHhhh-hheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1121 11122222333344443332221 1111 1111223445556666666554 3443322111
Q ss_pred CCh--hhHH--------------------------hHHHHHHccCchhHHHHHHHhhhh-cCCCCchHHHHHHHHHHHHh
Q 012879 205 PSE--ITIL--------------------------AVLPAIWQNGDVKSCQLIHGYGEK-RGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 205 ~~~--~~~~--------------------------~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 255 (454)
++. .+-+ .-++++....++..+..-.+.... .+. ++.....--+.+..
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~---s~~~l~LKsq~eY~ 252 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD---SSMALLLKSQLEYA 252 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC---CcHHHHHHHHHHHH
Confidence 111 1111 112222222333333222222211 111 11122222344566
Q ss_pred cCChhHHHHHHHHhhhc-CC---------ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-------CCCCCcH-------
Q 012879 256 CGCIFSASKLFEDISVE-RK---------NLVSWTSIISGFAMHGMGKEAVENFGRMQK-------VGLKPNR------- 311 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~-~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~------- 311 (454)
.|++.+|.+++...--. .| .-..||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 78999999988765333 11 112356666667777777777777776653 4555432
Q ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 012879 312 ----VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358 (454)
Q Consensus 312 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (454)
.+||.=+ .+...|++-.|.+.|....+. +..++..|-.|.++|.
T Consensus 333 ks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 333 KSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred cchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 2344433 456789999999999999885 4567788888888886
No 450
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.40 E-value=1.3e+02 Score=25.34 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC---ChhHH--HHHHHHHHhcCChHHHHHHHhcCCCC--CCc
Q 012879 307 LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP---DIKHY--GCLIDMLGRAGRLEQAEKTALGIPSE--ITD 379 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 379 (454)
+.+...-++.|+--|.-...+.+|...|..-. ++.| |...+ ..-|......|++++|++..+.+... ..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 34555566666655544444555544444332 5544 22222 23456667778888887777766544 222
Q ss_pred HhHHHHHH----HHHHcCCChhHHHHHHHHHH
Q 012879 380 VVVWRTLL----GACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 380 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 407 (454)
...+-.|. --..+.|..++|+++++.=+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222221 12346667777777666433
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.19 E-value=87 Score=23.46 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=29.6
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
..++|..|.+.|+-..-+..|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777776655556667777777777777777777775
No 452
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.39 E-value=23 Score=30.88 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCC
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 66 (454)
+..-||.-|....+.||+++|+.++++.. +.|..
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe---~LG~~ 289 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAE---RLGST 289 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCc
Confidence 34457799999999999999999999999 77766
No 453
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=1.7e+02 Score=26.37 Aligned_cols=165 Identities=13% Similarity=0.026 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc------CCChhhHHH-HHHHHHhcCChhHHHHHHHHHHhC----CCCCcHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE------RKNLVSWTS-IISGFAMHGMGKEAVENFGRMQKV----GLKPNRVT 313 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~ 313 (454)
.-..++..|...+++.+|+.+...+... ++..+.... =-.+|....+..+|..-+...+.. =++|-...
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 3356888999999999999888776554 122111111 123555566677776666555432 12333222
Q ss_pred HHHHHHH--HhcCCChHHHHHHHHHHHHhcCC-CCChhHHH---HHHHHHHhcCChHHHHHHHhcCCC--C-CCcHhHHH
Q 012879 314 FLSVLNA--CSHGGLVEEGLNFFDKMVEECEV-LPDIKHYG---CLIDMLGRAGRLEQAEKTALGIPS--E-ITDVVVWR 384 (454)
Q Consensus 314 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~--~-~p~~~~~~ 384 (454)
---+..+ ++...++..|..+|-+..+.+.. ..+..... .|+-+=.-.+..++.-.++..=.. . .|+.....
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 2222221 23447888899888888773221 22223322 233333345677766655542111 1 57777888
Q ss_pred HHHHHHHcC--CChhHHHHHHHHHHHh
Q 012879 385 TLLGACSFH--GNVEMGERVTRKILEM 409 (454)
Q Consensus 385 ~l~~~~~~~--g~~~~A~~~~~~~~~~ 409 (454)
.+..++.+. .+++.|+.-++.=+..
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~ 316 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAE 316 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhc
Confidence 888887654 3566666655544433
No 454
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.69 E-value=83 Score=22.76 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCC
Q 012879 45 ESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 124 (454)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 124 (454)
...++|..+.+.+. ..+.. ....--+-+..+.+.|++++| +..-. ....||...|.+| +-.+.|-
T Consensus 20 HcH~EA~tIa~wL~---~~~~~------~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL--~a~klGL 84 (116)
T PF09477_consen 20 HCHQEANTIADWLE---QEGEM------EEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAAL--CAWKLGL 84 (116)
T ss_dssp T-HHHHHHHHHHHH---HTTTT------HHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHH--HHHHCT-
T ss_pred HHHHHHHHHHHHHH---hCCcH------HHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHH--HHHhhcc
Confidence 34566666666665 33322 222222233445666777666 11111 2224565555444 3356666
Q ss_pred hhHHHHHHhhCCC
Q 012879 125 LKDSSKLFDEMPE 137 (454)
Q Consensus 125 ~~~a~~~~~~~~~ 137 (454)
-+++...+.++..
T Consensus 85 ~~~~e~~l~rla~ 97 (116)
T PF09477_consen 85 ASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 455
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.05 E-value=1.7e+02 Score=25.88 Aligned_cols=220 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCcchHHHHHH--HHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHH-HccCchhHHH---HHHHhhhhcCCCCch
Q 012879 169 RNVVSWTGIID--GYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAI-WQNGDVKSCQ---LIHGYGEKRGFTAFD 242 (454)
Q Consensus 169 ~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~---~~~~~~~~~~~~~~~ 242 (454)
+....++.+|+ .|...+--++..+++.-+. ++.++...-..++.+. ...|-+..-. -+-+.+++.|+ .
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk---~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi---~ 182 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK---LFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGI---A 182 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhH---H
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhc-------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVE-------RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
......+...|...++.+.....+++..-. +|+-.+-......+...|--+-..-.=.++-. ..-...-.
T Consensus 183 l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~---~a~kElq~ 259 (412)
T KOG2297|consen 183 LSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE---GARKELQK 259 (412)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN 395 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 395 (454)
.|..-..+...+++......+-.+. .--|+..+...+.++......|.+-.+...+-.-+ ...+|..|+.+++..|+
T Consensus 260 ~L~~q~s~e~p~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr--hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 260 ELQEQVSEEDPVKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR--HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH--HHHhhhHHHHHHhcCCh
Q ss_pred hhHHH
Q 012879 396 VEMGE 400 (454)
Q Consensus 396 ~~~A~ 400 (454)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
No 456
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.90 E-value=2.5e+02 Score=27.80 Aligned_cols=88 Identities=6% Similarity=-0.021 Sum_probs=64.3
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCCh------hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 181 YTRMNRSNEALALFRKMVACEYTEPSE------ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
..+..++..+.+.|..-.. .++.|. .....+.-+|....++|.|.++++++.+. .|.++..--.+..+..
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--DRQSPLCQLLMLQSFL 439 (872)
T ss_pred HHHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--ccccHHHHHHHHHHHH
Confidence 3456778888888887665 333332 23455666778889999999999999986 4556666666777888
Q ss_pred hcCChhHHHHHHHHhhhc
Q 012879 255 KCGCIFSASKLFEDISVE 272 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~ 272 (454)
..|+.++|+.........
T Consensus 440 ~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HhcchHHHHHHHHHHHhh
Confidence 889999999888776544
No 457
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.85 E-value=50 Score=19.66 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=18.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 288 MHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 288 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555566666666666666666555555543
No 458
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.51 E-value=1.1e+02 Score=23.72 Aligned_cols=57 Identities=5% Similarity=-0.070 Sum_probs=40.8
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCC
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 124 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 124 (454)
+.|.+ + ...-..++..+...++.-.|.++++.+.+.+...+..|--..++.+...|-
T Consensus 14 ~~glr--~----T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 14 EAGLR--L----TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HcCCC--c----CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 66666 2 234567788888888788999999999998766666554446677777764
No 459
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=2e+02 Score=26.45 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH------------HHHHHHcCCChhHHHHHHHHHHHhhcCCCC---
Q 012879 351 GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT------------LLGACSFHGNVEMGERVTRKILEMERGYGG--- 415 (454)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 415 (454)
..|...+-..|++++|..++.+..-. ||.. -++.|...+|+-.|.-+-++....-...+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE-----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE-----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh-----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 34566677788888888887775433 3322 245677778888887777777655544332
Q ss_pred ----cHHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 416 ----DYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 416 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.|..++....+.+.+=++-+.++.+..-+...
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk 245 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVK 245 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhcccccc
Confidence 35666777777777777888887777655433
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.91 E-value=2.1e+02 Score=26.66 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCC----------------chhHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERN----------------LVTWNVMITGLVKWGELEFARSLFEEMPC--- 168 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--- 168 (454)
+...-..++..+....++.+-++..+....|+ -.+...+++.++-.||+..|+++++.+.-
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 34444445555666666666665555543321 13455677888999999999999987752
Q ss_pred --------CCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 169 --------RNVVSWTGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 169 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
-.+.++-.+.-+|...+++.+|++.|....-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445777888899999999999999988754
No 461
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.86 E-value=2.8e+02 Score=28.08 Aligned_cols=173 Identities=13% Similarity=0.141 Sum_probs=96.8
Q ss_pred HHHHHHHhhhhcCCCC--chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh----------hHHHHHHHHHhcCCh
Q 012879 225 SCQLIHGYGEKRGFTA--FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV----------SWTSIISGFAMHGMG 292 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~ 292 (454)
+-..++.+|..+-..| .++.+...++-.|....+++...++.+.+... ||.. .|.-.+.--.+-|+-
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3344555665542222 24566777888888888899999988888775 3221 122222323345777
Q ss_pred hHHHHHHHHHHhC--CCCCcHHHHHH-----H--HHHHhcCCChHHHHHHHHHHHHhcCCCCChhH---HHHHHHHH---
Q 012879 293 KEAVENFGRMQKV--GLKPNRVTFLS-----V--LNACSHGGLVEEGLNFFDKMVEECEVLPDIKH---YGCLIDML--- 357 (454)
Q Consensus 293 ~~A~~~~~~m~~~--~~~p~~~~~~~-----l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~--- 357 (454)
++|+...-.|.+. .+.||...... + -..|...+..+.|.++|++.-+ +.|.... +..|+.+-
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhh
Confidence 8888877777653 35666543321 1 1234455667788888887764 4554332 22332222
Q ss_pred ------------------HhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 358 ------------------GRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 358 ------------------~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
++.|.+++..++|+ +. ..+.+-.-.+|+.+|++..+.|.++.|.
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWd--------V~---~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWD--------VA---TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHh--------HH---HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 22222222222221 11 1233344567889999999988887665
No 462
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=50.24 E-value=2e+02 Score=26.04 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=7.4
Q ss_pred CChhhHHHHHHHHHhcC
Q 012879 274 KNLVSWTSIISGFAMHG 290 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g 290 (454)
||......++++.....
T Consensus 228 ~d~~~~~a~lRAls~~~ 244 (340)
T PF12069_consen 228 PDLELLSALLRALSSAP 244 (340)
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 44444444444444433
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.16 E-value=19 Score=31.41 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=25.9
Q ss_pred hcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 359 RAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
+.|+.++|..+|+......| ++.....+....-..+++-+|-.++-+++...|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 44555555555555444422 233333333333334445555555555555555444
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.05 E-value=1.4e+02 Score=24.21 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHhcCC----------------hHHHHHHHhcC
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG----CLIDMLGRAGR----------------LEQAEKTALGI 373 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~----------------~~~A~~~~~~~ 373 (454)
|..-+-.+.+.|+.++-.++-+-+.....-+....+.. .++..+.+... .+.|+.+|+.+
T Consensus 16 yf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I 95 (200)
T cd00280 16 YFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESI 95 (200)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHH
Q ss_pred CCCCCcHhHHHHHHH---------HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 374 PSEITDVVVWRTLLG---------ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 374 ~~~~p~~~~~~~l~~---------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
.+..+-..+..-.+. .|.+.|.+++|.+++++..+ +++....-..|...-.+...+...++-|
T Consensus 96 ~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 96 EKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.82 E-value=1.5e+02 Score=26.04 Aligned_cols=141 Identities=13% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHhCC--------CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012879 298 NFGRMQKVG--------LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 298 ~~~~m~~~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
++.-+-+.| ++.|...++.++.- ...+.++--+-.++..+.+|-.-....+..+.+-|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HhcCCCC------CCcH-hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC---CCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 370 ALGIPSE------ITDV-VVWRTLLGACSFHGNVEMGERVTRKILEMERG---YGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 370 ~~~~~~~------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
.++.... ..|+ .+--.|.-.|....-.++-++..+.+++.|.+ -...-..-+-.+....++.+|-.++-.
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred H
Q 012879 440 M 440 (454)
Q Consensus 440 ~ 440 (454)
.
T Consensus 218 ~ 218 (412)
T COG5187 218 I 218 (412)
T ss_pred H
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.55 E-value=24 Score=30.90 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=54.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHH-HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRT-LLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
.+.-|+..|...+.--.+.|.+.+...+|.+.....| |+..|-. .-.-+...++++.+..+|.+.++.++.++..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3445666666666555566777778888888777744 4444432 2233456788999999999999988888877664
Q ss_pred HH
Q 012879 420 MY 421 (454)
Q Consensus 420 l~ 421 (454)
..
T Consensus 182 yf 183 (435)
T COG5191 182 YF 183 (435)
T ss_pred HH
Confidence 43
No 467
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=49.53 E-value=36 Score=23.52 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
.++|+.+...|. ..... |++.|..|-.-++..+-..|-+..+.++...-.+.|..|
T Consensus 25 IdKALDFIggMn---tSas~--P~sMdESTAKGi~KyL~elGvPasa~dv~aRg~qeGWn~ 80 (119)
T PF08986_consen 25 IDKALDFIGGMN---TSASV--PHSMDESTAKGIFKYLKELGVPASAADVTARGEQEGWNP 80 (119)
T ss_dssp HHHHHHHHHTS----TT-SS----HCCCHHHHHHHHHHHHCT----HHHHHHHHHHCT--H
T ss_pred HHHHHHHhcccc---cCCCC--CCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 478999988887 77766 877888998888888888898888888888777777543
No 468
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.22 E-value=1.4e+02 Score=26.45 Aligned_cols=24 Identities=8% Similarity=0.308 Sum_probs=15.9
Q ss_pred CCcchHHHHHHHHHhcCChHHHHH
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~ 192 (454)
=|+..|..+..+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 466677777777777776655543
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.08 E-value=45 Score=27.91 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=42.3
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT 378 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 378 (454)
...+.++.+.+.+++.+... -.+-....|-.+...-.+.|+++.|.+.|++..+..|
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34567888888888888874 2233466777777778889999999998888887733
No 470
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.05 E-value=24 Score=26.55 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 321 (454)
..-|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999988874 56666543
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.66 E-value=2e+02 Score=25.48 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=48.5
Q ss_pred hHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHH----------hcCCHHHHHHHH
Q 012879 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLV----------KWGELEFARSLF 163 (454)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~A~~~~ 163 (454)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+++.+++.+...... |..++..|| -.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456667777777777777776666677777777778887777642211 444444444 246666666666
Q ss_pred hhCCCCCcc
Q 012879 164 EEMPCRNVV 172 (454)
Q Consensus 164 ~~~~~~~~~ 172 (454)
+.-...|+.
T Consensus 342 Q~yp~tdi~ 350 (370)
T KOG4567|consen 342 QNYPTTDIS 350 (370)
T ss_pred hcCCCCCHH
Confidence 555444433
No 472
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.32 E-value=1.6e+02 Score=24.60 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
-.+.....+.|+.++|.+.|.+++..+..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34445556677777777777777765443
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.09 E-value=2.5e+02 Score=26.05 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=35.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChh--hHHhHHHHH--HccCchhHHHHHHHhhhhc
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEI--TILAVLPAI--WQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 236 (454)
..+.+.+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888763 334333 344444444 3556677777777776654
No 474
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.83 E-value=33 Score=30.55 Aligned_cols=15 Identities=13% Similarity=-0.108 Sum_probs=6.1
Q ss_pred CChhHHHHHHHHhhh
Q 012879 257 GCIFSASKLFEDISV 271 (454)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (454)
|++++|.+.|....+
T Consensus 196 g~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 196 GNWEEAAHDLALACK 210 (377)
T ss_pred hchHHHHHHHHHHHh
Confidence 444444444443333
No 475
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.63 E-value=2.2e+02 Score=25.58 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=9.3
Q ss_pred HHHccCchhHHHHHHHhhhh
Q 012879 216 AIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~ 235 (454)
++...||...+.+++....+
T Consensus 124 ~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 124 LKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 33444455555544444444
No 476
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.00 E-value=2.2e+02 Score=25.16 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
...++.+...|++.+|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555566666666666665544
No 477
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.59 E-value=1.3e+02 Score=22.36 Aligned_cols=63 Identities=17% Similarity=0.013 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHH-------HHhcCCCCCC-cHhHHHHH----HHHHHcCCChhHHHHHHHHHHHh
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEK-------TALGIPSEIT-DVVVWRTL----LGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~-------~~~~~~~~~p-~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
...+..|..++...|++++++. +|++--+... .-..|-.. ..++-..|+.++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3344556666667777665543 4443222212 22333322 34566788999998888876543
No 478
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=43.67 E-value=2.4e+02 Score=26.35 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred hCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH--------HHhcCChHHHHHHHhcCCC
Q 012879 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM--------LGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~ 375 (454)
...+.||..+.+.+...++..-..+-...+|+-..+. + .|=...+.++|-. -.+...-++++++++.|..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq-a-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ-A-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-C-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 3456677777666666666656666666667666653 2 2322222222211 1234456677777777765
Q ss_pred C--CCcHhHHHHHHHH
Q 012879 376 E--ITDVVVWRTLLGA 389 (454)
Q Consensus 376 ~--~p~~~~~~~l~~~ 389 (454)
. ..|+.-+-.|..-
T Consensus 254 ~L~~eDvpDffsLAqy 269 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQY 269 (669)
T ss_pred hcccccchhHHHHHHH
Confidence 5 2333334444433
No 479
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.53 E-value=62 Score=22.51 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=14.1
Q ss_pred ChhHHHHHHhhCCCCCchhHHHHHHHHHh
Q 012879 124 FLKDSSKLFDEMPERNLVTWNVMITGLVK 152 (454)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 152 (454)
+.+++.++++.+...++.+|..+..++-.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 44445555555444444455555444433
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.42 E-value=2.4e+02 Score=25.08 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----------cCChHH
Q 012879 296 VENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----------AGRLEQ 365 (454)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 365 (454)
.++++.|...++.|.-..|..+.-.+.+.=.+...+.+|+.+... ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 456777777778887777777776777777777788888877653 2224455544442 355555
Q ss_pred HHHHHhcCC
Q 012879 366 AEKTALGIP 374 (454)
Q Consensus 366 A~~~~~~~~ 374 (454)
-.++++.-.
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 555555543
No 481
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.15 E-value=40 Score=25.42 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=23.7
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCchhHHHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVYVNTALVNM 118 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (454)
..|.-..|-.+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 355677899999999999988764 6666654
No 482
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.10 E-value=81 Score=29.62 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=40.2
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhh-HHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChh
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEIT-ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
...+.++.|+.++.+.++. .|+... |..-..++.+.+++..|..=...+.+. .|.-...|..=..++.+.+.+.
T Consensus 15 l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHH
Confidence 3444555555555555542 232222 222224444445554444444444443 1222222222233333444455
Q ss_pred HHHHHHHHhhhcCCChhhHHHHH
Q 012879 261 SASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
+|...|+......|+-.-....+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHH
Confidence 55555555444444443333333
No 483
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.50 E-value=58 Score=21.00 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=41.0
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.|+...++.+++..++..-.++++..+.++. ..|.- +..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al---~~g~I------~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRAL---QRGSI------DLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSS-------HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999998 77765 777887777776653
No 484
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.70 E-value=2.7e+02 Score=25.15 Aligned_cols=118 Identities=9% Similarity=0.025 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh------cCCChHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCCh
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACS------HGGLVEEGLNFFDKMVEECEVLPDIK-HYGCLIDMLGRAGRL 363 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 363 (454)
.++++..++++....+. |.++.....|.++- ..-++.....+|+.+... .|+++ +.|.-+ +.....-+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehHHH-HHHHhhhH
Confidence 45677788888777664 78887777776653 234677777788877654 44432 233222 23344445
Q ss_pred HHHHHHHhcCCCC-CC-cHh-HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 364 EQAEKTALGIPSE-IT-DVV-VWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 364 ~~A~~~~~~~~~~-~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
+.++...+.+... .. +.. .+..-...+.+.|+.++|...|++++.+..+.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 6666666665554 11 122 23334556778899999999999988876653
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.26 E-value=4.9e+02 Score=28.11 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=14.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh
Q 012879 249 LIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
+..+|...|...+|++.|.+...
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhh
Confidence 33446667777777777776554
No 486
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=41.08 E-value=4.5e+02 Score=27.63 Aligned_cols=52 Identities=6% Similarity=-0.221 Sum_probs=22.1
Q ss_pred CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 205 PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
.|..++..-.......|++..+.+++.++.+......+...+..++..+...
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~L 1280 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENL 1280 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 3444444444444444555555554444444222222333444344443333
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.04 E-value=85 Score=27.13 Aligned_cols=57 Identities=19% Similarity=0.035 Sum_probs=38.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+=.++.+.++++.|....++.+..+|.++.-+.--+-+|.+.|...-|.+-+....+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 334566667777777777777777777666666667777777777777666666444
No 488
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=40.91 E-value=1.5e+02 Score=22.17 Aligned_cols=56 Identities=20% Similarity=0.030 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
+..++..++.-.|..+.|.++++...=- ++- ..-..++..|.+..+.++..++-++
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG-~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWG-HTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444555555555555555555544332 111 1223355555555555554444433
No 489
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.62 E-value=4.8e+02 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
..++.+...+++.+|+.+.++-
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHh
Confidence 3445566667777776665543
No 490
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.55 E-value=2.2e+02 Score=23.93 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=7.9
Q ss_pred HhcCCChHHHHHHHHHH
Q 012879 321 CSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~ 337 (454)
....|+.+.|++....+
T Consensus 74 ~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 74 AIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 34445555554444444
No 491
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.41 E-value=2.7e+02 Score=24.93 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=22.8
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (454)
.+.|+..+|.+.|+.+.+...+..-..+...|+.++....-+.+...++-+
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666665555554322111112223455555555444444444433
No 492
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.19 E-value=3e+02 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=19.4
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhh
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGE 234 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (454)
|-...++..+...+...|+...|.++++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445566666666677777666666666553
No 493
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.16 E-value=2.7e+02 Score=24.80 Aligned_cols=30 Identities=7% Similarity=-0.081 Sum_probs=12.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+......++.+++...+.+...++++....
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 333344444444444444444444444443
No 494
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.80 E-value=3.7e+02 Score=26.30 Aligned_cols=165 Identities=13% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhC-----------CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------------
Q 012879 286 FAMHGMGKEAVENFGRMQKV-----------GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE-------------- 340 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~-----------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------- 340 (454)
+-..+.+++|...|.-.... .-+-...+.-.+...+-.+|+.+.+..+.++..-.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred -----cCCCCChhHHHHH---HHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHH-cCCChhHHHHHHHHHHHh
Q 012879 341 -----CEVLPDIKHYGCL---IDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACS-FHGNVEMGERVTRKILEM 409 (454)
Q Consensus 341 -----~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 409 (454)
+...-+...|.+| |..+.+.|.+..|.++.+-+.+. .-|+.....+|+.|+ +..++.-.+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred hcC---CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCC
Q 012879 410 ERG---YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPG 450 (454)
Q Consensus 410 ~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 450 (454)
+.- +...|...+-.+.-.++.+.+.+.......+-++.-|+
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
No 495
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.74 E-value=2.3e+02 Score=28.14 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=46.2
Q ss_pred hHHHHHHccCchhHHHHHHHhhhhcCC-CCchHHHHHHHHHHHHhcCChh------HHHHHHHHhhhcCCChhhHHHHHH
Q 012879 212 AVLPAIWQNGDVKSCQLIHGYGEKRGF-TAFDIRVLNCLIDTYAKCGCIF------SASKLFEDISVERKNLVSWTSIIS 284 (454)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~l~~ 284 (454)
+++.+|...|++-.+.++++......- ...-...+|..++...+.|.++ .|.+.+++..- .-|..||..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-n~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-NGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-CCcchHHHHHHH
Confidence 778888888888888888887766421 1112346677777777777653 23333333321 246667777666
Q ss_pred HHHh
Q 012879 285 GFAM 288 (454)
Q Consensus 285 ~~~~ 288 (454)
+-..
T Consensus 112 ~sln 115 (1117)
T COG5108 112 ASLN 115 (1117)
T ss_pred hhcC
Confidence 5544
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.46 E-value=86 Score=22.85 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
..+...+..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333334444555566666655554455555544555554444
No 497
>PRK09857 putative transposase; Provisional
Probab=39.41 E-value=1.1e+02 Score=27.08 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=41.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.++.-....|+.++..++++.+.+..|.......+++.-+.+.|..+++.++.++|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34443345666666677777666665555555667777777777777788888888777765
No 498
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.83 E-value=42 Score=18.02 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHh
Q 012879 292 GKEAVENFGRMQK 304 (454)
Q Consensus 292 ~~~A~~~~~~m~~ 304 (454)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 499
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.53 E-value=3.5e+02 Score=26.31 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=28.3
Q ss_pred hHHHHHHHH-HHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 293 KEAVENFGR-MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 293 ~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
++....+.. +.+.|+..+......++... .|+...|..+++.+..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 333444444 34467777776666666553 5888888888877654
No 500
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=38.10 E-value=2.7e+02 Score=24.15 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHh---cCCCCCC-----cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 352 CLIDMLGRAGRLEQAEKTAL---GIPSEIT-----DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~---~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
.|+.-|.+.|+++.|-.++- ....... +...-..++......++++-+.++.+-+...++.+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 45666667777777654333 2222211 22333456666777888888888888888777763
Done!