Query 012879
Match_columns 454
No_of_seqs 573 out of 2490
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 18:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-39 5.5E-44 317.0 32.3 290 150-446 282-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-37 4E-42 303.8 30.5 398 28-445 81-547 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.7E-32 3.3E-36 247.7 37.8 376 37-429 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-29 1.5E-33 229.9 37.0 370 7-395 11-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.5E-29 8.4E-34 235.5 23.8 186 172-360 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.2E-28 4.2E-33 230.8 20.5 202 189-393 8-223 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 8.6E-26 3E-30 212.1 36.8 385 10-433 7-444 (450)
8 2gw1_A Mitochondrial precursor 100.0 7.8E-27 2.7E-31 223.1 30.1 400 29-445 4-480 (514)
9 3fp2_A TPR repeat-containing p 100.0 5.3E-26 1.8E-30 218.6 28.3 398 29-445 23-493 (537)
10 2gw1_A Mitochondrial precursor 99.9 1.8E-25 6.1E-30 213.6 28.4 395 7-420 18-489 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 3E-25 1E-29 208.4 27.8 326 106-439 23-405 (450)
12 3fp2_A TPR repeat-containing p 99.9 5.3E-23 1.8E-27 197.7 33.6 388 7-416 37-498 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 175.7 32.7 342 30-427 2-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-21 3.7E-26 178.2 28.9 297 142-445 5-337 (359)
15 2ooe_A Cleavage stimulation fa 99.9 5.8E-20 2E-24 175.9 36.3 407 18-444 2-493 (530)
16 1fch_A Peroxisomal targeting s 99.9 2E-21 6.9E-26 177.2 23.6 284 151-440 36-356 (368)
17 3hym_B Cell division cycle pro 99.9 8.5E-21 2.9E-25 170.2 26.0 247 173-424 58-314 (330)
18 3hym_B Cell division cycle pro 99.9 4.2E-20 1.5E-24 165.7 29.2 287 105-397 18-322 (330)
19 2xm6_A Protein corresponding t 99.9 4.5E-19 1.5E-23 168.0 36.8 367 28-425 36-451 (490)
20 4eqf_A PEX5-related protein; a 99.9 8.7E-21 3E-25 172.9 20.6 264 170-439 64-352 (365)
21 4g1t_A Interferon-induced prot 99.9 1.1E-19 3.9E-24 171.5 26.7 367 73-454 50-470 (472)
22 2xm6_A Protein corresponding t 99.9 4.5E-18 1.5E-22 161.2 36.3 351 73-445 38-434 (490)
23 1b89_A Protein (clathrin heavy 99.8 3.1E-20 1.1E-24 166.2 16.5 284 4-333 12-304 (449)
24 1b89_A Protein (clathrin heavy 99.8 1.5E-19 5.1E-24 161.8 20.7 352 43-445 15-387 (449)
25 3cv0_A Peroxisome targeting si 99.8 1.2E-19 4E-24 162.5 20.3 266 170-442 20-314 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 1.3E-18 4.5E-23 152.4 26.3 270 149-435 8-286 (291)
27 1fch_A Peroxisomal targeting s 99.8 1.1E-19 3.9E-24 165.6 19.3 283 153-445 14-316 (368)
28 2ooe_A Cleavage stimulation fa 99.8 3.5E-17 1.2E-21 156.6 36.9 387 8-412 25-495 (530)
29 4g1t_A Interferon-induced prot 99.8 1.2E-18 4.2E-23 164.4 26.5 375 29-421 49-471 (472)
30 4eqf_A PEX5-related protein; a 99.8 1.7E-19 5.8E-24 164.3 17.7 260 139-405 64-352 (365)
31 3mkr_A Coatomer subunit epsilo 99.8 1.8E-18 6.1E-23 151.5 21.1 251 178-445 6-266 (291)
32 3cv0_A Peroxisome targeting si 99.8 1.8E-18 6.1E-23 154.8 19.6 278 29-338 19-313 (327)
33 1xi4_A Clathrin heavy chain; a 99.8 6.1E-16 2.1E-20 154.3 38.3 345 29-427 983-1327(1630)
34 1xi4_A Clathrin heavy chain; a 99.8 7E-16 2.4E-20 153.9 35.4 371 8-436 998-1377(1630)
35 3uq3_A Heat shock protein STI1 99.8 7.6E-17 2.6E-21 138.9 20.8 224 172-410 6-237 (258)
36 3spa_A Mtrpol, DNA-directed RN 99.8 2.2E-18 7.6E-23 166.5 11.1 167 242-409 126-310 (1134)
37 3u4t_A TPR repeat-containing p 99.7 3.4E-16 1.2E-20 136.1 21.8 252 172-428 4-269 (272)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.3E-16 4.6E-21 138.8 19.0 246 182-437 16-269 (275)
39 3uq3_A Heat shock protein STI1 99.7 1.1E-16 3.9E-21 137.8 17.9 224 207-444 5-237 (258)
40 2pl2_A Hypothetical conserved 99.7 6.9E-17 2.3E-21 135.2 15.8 210 204-441 2-212 (217)
41 2pl2_A Hypothetical conserved 99.7 1.4E-15 4.6E-20 127.3 20.3 198 169-374 3-212 (217)
42 2h6f_A Protein farnesyltransfe 99.7 1.7E-15 5.8E-20 137.0 21.8 249 171-427 97-366 (382)
43 2ho1_A Type 4 fimbrial biogene 99.7 5.7E-15 1.9E-19 126.8 23.2 204 208-415 38-244 (252)
44 3e4b_A ALGK; tetratricopeptide 99.7 9E-16 3.1E-20 143.2 18.3 378 36-443 8-421 (452)
45 3u4t_A TPR repeat-containing p 99.7 7.1E-15 2.4E-19 127.7 22.9 233 31-274 3-252 (272)
46 1ouv_A Conserved hypothetical 99.7 2.9E-14 9.9E-19 124.0 26.7 226 170-412 5-254 (273)
47 2q7f_A YRRB protein; TPR, prot 99.7 6.9E-16 2.3E-20 131.7 15.9 213 207-424 23-237 (243)
48 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-17 4E-22 161.5 5.2 152 29-185 125-286 (1134)
49 4a1s_A PINS, partner of inscut 99.7 1.5E-15 5E-20 140.6 19.1 265 176-442 53-371 (411)
50 2vq2_A PILW, putative fimbrial 99.7 5.1E-15 1.7E-19 124.5 20.4 204 207-414 8-216 (225)
51 2vq2_A PILW, putative fimbrial 99.7 1E-14 3.5E-19 122.7 21.9 203 240-444 5-212 (225)
52 1ouv_A Conserved hypothetical 99.7 8.5E-14 2.9E-18 121.0 28.1 226 205-445 4-253 (273)
53 3e4b_A ALGK; tetratricopeptide 99.7 7.2E-15 2.5E-19 137.1 22.5 342 79-445 8-389 (452)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-15 3.8E-20 133.0 15.4 241 152-403 17-269 (275)
55 3sf4_A G-protein-signaling mod 99.7 4.4E-15 1.5E-19 136.9 20.1 299 140-438 9-371 (406)
56 3ro2_A PINS homolog, G-protein 99.7 5.7E-15 1.9E-19 132.3 20.0 269 174-444 8-333 (338)
57 4e6h_A MRNA 3'-END-processing 99.7 4.6E-13 1.6E-17 129.2 33.7 422 11-446 48-573 (679)
58 2h6f_A Protein farnesyltransfe 99.7 4.5E-15 1.5E-19 134.3 18.5 233 207-445 97-350 (382)
59 2q7f_A YRRB protein; TPR, prot 99.7 2.3E-15 8E-20 128.3 15.6 202 242-446 22-225 (243)
60 2ho1_A Type 4 fimbrial biogene 99.7 3.3E-14 1.1E-18 122.0 22.4 198 172-376 38-238 (252)
61 3sf4_A G-protein-signaling mod 99.6 9.5E-15 3.2E-19 134.7 18.8 292 107-398 7-365 (406)
62 4abn_A Tetratricopeptide repea 99.6 5.7E-15 1.9E-19 138.7 14.8 212 223-440 84-318 (474)
63 4a1s_A PINS, partner of inscut 99.6 1.1E-14 3.9E-19 134.6 14.9 279 29-340 46-372 (411)
64 2ond_A Cleavage stimulation fa 99.6 8E-13 2.7E-17 116.9 25.4 223 188-416 33-277 (308)
65 3ro2_A PINS homolog, G-protein 99.6 3.7E-14 1.3E-18 127.0 17.1 279 29-340 3-332 (338)
66 3ulq_A Response regulator aspa 99.6 9.6E-14 3.3E-18 127.0 18.8 236 177-412 109-371 (383)
67 3ulq_A Response regulator aspa 99.6 4E-14 1.4E-18 129.6 16.2 230 213-443 109-368 (383)
68 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-13 6.5E-18 111.0 18.2 169 242-413 4-174 (184)
69 3vtx_A MAMA; tetratricopeptide 99.6 9.4E-14 3.2E-18 112.9 16.0 169 274-445 3-172 (184)
70 2ond_A Cleavage stimulation fa 99.6 9.7E-13 3.3E-17 116.4 23.1 217 224-446 33-273 (308)
71 4e6h_A MRNA 3'-END-processing 99.6 1.8E-11 6.3E-16 118.1 33.5 391 8-414 79-575 (679)
72 3nf1_A KLC 1, kinesin light ch 99.5 5.5E-14 1.9E-18 124.5 13.5 240 172-411 28-309 (311)
73 3nf1_A KLC 1, kinesin light ch 99.5 2.9E-14 9.9E-19 126.3 11.2 238 206-443 26-307 (311)
74 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.4E-16 111.8 28.4 261 180-442 23-321 (373)
75 3q15_A PSP28, response regulat 99.5 4.9E-12 1.7E-16 115.4 24.8 234 177-410 107-366 (378)
76 4abn_A Tetratricopeptide repea 99.5 4.5E-13 1.5E-17 125.8 17.4 196 171-373 102-318 (474)
77 3q15_A PSP28, response regulat 99.5 5.3E-11 1.8E-15 108.5 29.3 315 28-374 7-363 (378)
78 4i17_A Hypothetical protein; T 99.5 4.4E-12 1.5E-16 106.8 19.0 208 204-423 4-223 (228)
79 3as5_A MAMA; tetratricopeptide 99.5 3.7E-12 1.3E-16 103.2 17.5 171 242-415 7-179 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.5 4.8E-12 1.6E-16 123.6 20.5 169 239-411 5-176 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 1E-12 3.5E-17 106.5 13.0 169 277-448 9-178 (186)
82 1hz4_A MALT regulatory protein 99.4 5.2E-10 1.8E-14 101.7 29.7 273 34-339 17-321 (373)
83 3edt_B KLC 2, kinesin light ch 99.4 2.3E-11 7.8E-16 105.8 18.4 227 183-409 13-281 (283)
84 4i17_A Hypothetical protein; T 99.4 6.5E-12 2.2E-16 105.8 13.5 196 240-445 4-211 (228)
85 4gyw_A UDP-N-acetylglucosamine 99.4 3.5E-11 1.2E-15 117.5 19.5 164 171-339 9-173 (723)
86 3mv2_B Coatomer subunit epsilo 99.3 4.3E-10 1.5E-14 96.6 22.7 243 148-414 21-287 (310)
87 3qky_A Outer membrane assembly 99.3 5.2E-11 1.8E-15 102.5 15.8 192 242-433 14-251 (261)
88 3edt_B KLC 2, kinesin light ch 99.3 6.9E-11 2.3E-15 102.8 16.3 201 172-374 44-279 (283)
89 3mv2_B Coatomer subunit epsilo 99.3 6.2E-10 2.1E-14 95.7 21.2 183 190-378 85-284 (310)
90 1qqe_A Vesicular transport pro 99.3 8.7E-11 3E-15 102.9 15.9 212 186-413 32-273 (292)
91 1qqe_A Vesicular transport pro 99.2 9.2E-10 3.1E-14 96.3 20.1 212 155-380 32-273 (292)
92 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 93.4 18.9 169 170-340 14-224 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.1E-10 2.4E-14 92.9 16.3 188 242-448 3-218 (225)
94 3urz_A Uncharacterized protein 99.2 1.4E-09 4.7E-14 89.9 17.0 56 249-304 60-116 (208)
95 2uy1_A Cleavage stimulation fa 99.2 7E-08 2.4E-12 90.5 30.5 357 10-409 10-413 (493)
96 3urz_A Uncharacterized protein 99.2 1.3E-09 4.4E-14 90.1 16.3 170 175-353 8-196 (208)
97 2fo7_A Synthetic consensus TPR 99.2 2.4E-10 8.2E-15 86.9 11.1 131 278-411 3-134 (136)
98 2fo7_A Synthetic consensus TPR 99.1 2.8E-09 9.6E-14 80.9 16.2 127 174-304 4-131 (136)
99 2pzi_A Probable serine/threoni 99.1 2.1E-09 7.3E-14 105.4 19.3 172 218-395 402-583 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.7E-09 5.8E-14 90.6 16.0 189 206-415 3-219 (225)
101 2pzi_A Probable serine/threoni 99.1 2.1E-09 7.1E-14 105.5 18.2 189 182-379 402-608 (681)
102 4ga2_A E3 SUMO-protein ligase 99.1 7.8E-11 2.7E-15 91.8 5.9 141 285-429 6-149 (150)
103 3qou_A Protein YBBN; thioredox 99.1 5.8E-09 2E-13 90.9 18.0 163 206-371 116-279 (287)
104 3rjv_A Putative SEL1 repeat pr 99.1 9.4E-09 3.2E-13 85.1 18.4 174 226-409 5-197 (212)
105 3dra_A Protein farnesyltransfe 99.1 1.1E-07 3.7E-12 82.6 25.6 233 182-421 43-300 (306)
106 2r5s_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 85.1 14.3 24 174-197 43-66 (176)
107 2r5s_A Uncharacterized protein 99.1 3.9E-09 1.3E-13 84.6 14.8 61 347-407 108-171 (176)
108 4ga2_A E3 SUMO-protein ligase 99.1 1.2E-09 4.2E-14 84.9 11.4 118 183-304 9-128 (150)
109 2vsy_A XCC0866; transferase, g 99.1 1.7E-09 5.8E-14 104.2 14.6 158 258-418 4-166 (568)
110 3qou_A Protein YBBN; thioredox 99.1 1E-08 3.4E-13 89.4 18.0 180 156-339 102-283 (287)
111 3dra_A Protein farnesyltransfe 99.0 3.4E-08 1.2E-12 85.7 19.9 216 222-442 48-286 (306)
112 3rjv_A Putative SEL1 repeat pr 99.0 2.4E-08 8.4E-13 82.6 18.3 174 261-444 4-198 (212)
113 2vsy_A XCC0866; transferase, g 99.0 9.2E-10 3.1E-14 106.1 10.9 156 289-447 2-161 (568)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 3.7E-09 1.3E-13 93.1 14.0 202 183-413 3-227 (307)
115 2uy1_A Cleavage stimulation fa 99.0 1.5E-08 5.1E-13 95.0 18.4 336 88-442 28-412 (493)
116 2c2l_A CHIP, carboxy terminus 99.0 1.5E-09 5.1E-14 94.3 8.4 96 207-304 4-100 (281)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 2.4E-08 8.2E-13 88.0 15.6 224 152-401 3-253 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.4E-08 1.8E-12 80.5 16.7 129 145-275 11-153 (213)
119 2qfc_A PLCR protein; TPR, HTH, 98.9 1.6E-07 5.5E-12 82.0 20.3 168 243-410 75-267 (293)
120 3gyz_A Chaperone protein IPGC; 98.9 3.1E-09 1.1E-13 82.3 8.0 95 349-443 38-133 (151)
121 4gco_A Protein STI-1; structur 98.9 7.6E-09 2.6E-13 77.6 9.6 110 312-423 14-124 (126)
122 3u3w_A Transcriptional activat 98.9 5.5E-08 1.9E-12 85.0 16.3 160 283-442 82-265 (293)
123 4f3v_A ESX-1 secretion system 98.9 9.2E-08 3.2E-12 81.1 16.8 182 43-236 18-237 (282)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 8.3E-08 2.8E-12 83.9 17.0 166 277-442 76-265 (293)
125 3u3w_A Transcriptional activat 98.9 2.5E-07 8.6E-12 80.8 19.8 211 193-411 33-268 (293)
126 2lni_A Stress-induced-phosphop 98.9 2E-08 6.8E-13 76.0 11.0 118 310-429 15-133 (133)
127 3q7a_A Farnesyltransferase alp 98.9 3.1E-06 1E-10 74.3 25.9 231 181-418 64-341 (349)
128 1a17_A Serine/threonine protei 98.9 1.6E-08 5.5E-13 79.9 10.3 128 313-442 15-145 (166)
129 2vyi_A SGTA protein; chaperone 98.8 2.4E-08 8.3E-13 75.1 10.8 120 310-431 11-131 (131)
130 1na0_A Designed protein CTPR3; 98.8 2.5E-08 8.5E-13 74.4 10.5 116 311-428 9-125 (125)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3E-07 1E-11 76.0 18.0 127 173-306 8-151 (213)
132 4gco_A Protein STI-1; structur 98.8 1.2E-07 4.3E-12 70.9 13.6 98 173-274 15-112 (126)
133 2c2l_A CHIP, carboxy terminus 98.8 3.5E-08 1.2E-12 85.6 11.7 98 171-272 4-101 (281)
134 2vgx_A Chaperone SYCD; alterna 98.8 4.2E-09 1.4E-13 81.6 5.1 116 298-417 9-126 (148)
135 1a17_A Serine/threonine protei 98.8 2.3E-07 7.8E-12 73.1 15.0 96 173-272 15-110 (166)
136 2e2e_A Formate-dependent nitri 98.8 1.1E-08 3.9E-13 82.0 6.9 128 286-416 20-151 (177)
137 1p5q_A FKBP52, FK506-binding p 98.8 3.5E-08 1.2E-12 87.9 10.6 95 347-441 196-292 (336)
138 4f3v_A ESX-1 secretion system 98.7 2.1E-07 7.1E-12 79.0 14.2 133 245-379 104-240 (282)
139 2vgx_A Chaperone SYCD; alterna 98.7 1.5E-07 5.1E-12 72.7 12.3 101 239-340 17-118 (148)
140 2vyi_A SGTA protein; chaperone 98.7 3.4E-07 1.2E-11 68.7 13.7 116 172-291 13-129 (131)
141 1na0_A Designed protein CTPR3; 98.7 4.2E-07 1.5E-11 67.5 13.9 96 173-272 11-106 (125)
142 3gyz_A Chaperone protein IPGC; 98.7 1.6E-07 5.5E-12 72.6 11.5 98 173-274 38-135 (151)
143 3q7a_A Farnesyltransferase alp 98.7 6E-06 2E-10 72.5 22.5 170 84-258 64-257 (349)
144 3gw4_A Uncharacterized protein 98.7 8.4E-07 2.9E-11 72.5 16.5 30 383-412 150-179 (203)
145 2lni_A Stress-induced-phosphop 98.7 4.1E-07 1.4E-11 68.6 13.3 112 172-287 17-129 (133)
146 2xcb_A PCRH, regulatory protei 98.7 4.7E-08 1.6E-12 75.1 8.0 108 311-420 18-126 (142)
147 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.8E-12 76.0 10.5 120 182-305 21-144 (177)
148 3upv_A Heat shock protein STI1 98.7 3.1E-08 1.1E-12 74.3 6.6 112 311-424 4-122 (126)
149 2kck_A TPR repeat; tetratricop 98.7 4.1E-08 1.4E-12 71.6 7.0 97 349-445 8-108 (112)
150 3upv_A Heat shock protein STI1 98.7 1.4E-07 4.9E-12 70.6 9.7 95 349-443 6-101 (126)
151 3sz7_A HSC70 cochaperone (SGT) 98.7 2.6E-07 9E-12 72.8 11.6 110 310-421 10-120 (164)
152 3gw4_A Uncharacterized protein 98.6 5E-07 1.7E-11 73.9 13.5 99 242-340 65-176 (203)
153 3dss_A Geranylgeranyl transfer 98.6 7.9E-06 2.7E-10 71.4 21.5 192 223-420 90-315 (331)
154 4gcn_A Protein STI-1; structur 98.6 9.3E-08 3.2E-12 71.7 8.1 95 313-409 10-112 (127)
155 1hxi_A PEX5, peroxisome target 98.6 4.1E-08 1.4E-12 73.0 5.9 97 349-445 19-116 (121)
156 2fbn_A 70 kDa peptidylprolyl i 98.6 1.1E-07 3.9E-12 77.6 9.1 97 348-444 89-187 (198)
157 4b4t_Q 26S proteasome regulato 98.6 1.6E-05 5.4E-10 73.5 24.8 166 174-339 58-244 (434)
158 1elw_A TPR1-domain of HOP; HOP 98.6 2E-07 6.8E-12 68.5 9.7 110 312-423 5-115 (118)
159 2xcb_A PCRH, regulatory protei 98.6 1.6E-07 5.3E-12 72.1 9.3 96 278-376 20-115 (142)
160 2fbn_A 70 kDa peptidylprolyl i 98.6 9.3E-08 3.2E-12 78.1 8.3 140 151-292 15-172 (198)
161 1p5q_A FKBP52, FK506-binding p 98.6 6.4E-07 2.2E-11 79.8 14.3 121 171-295 147-283 (336)
162 3q49_B STIP1 homology and U bo 98.6 1.4E-07 4.7E-12 71.8 8.0 102 309-412 7-109 (137)
163 3dss_A Geranylgeranyl transfer 98.6 5.4E-06 1.9E-10 72.4 18.8 216 225-445 48-306 (331)
164 3q49_B STIP1 homology and U bo 98.6 3.1E-07 1.1E-11 69.8 9.1 99 275-376 8-106 (137)
165 4b4t_Q 26S proteasome regulato 98.6 1.3E-06 4.3E-11 81.0 14.9 118 323-440 107-242 (434)
166 2dba_A Smooth muscle cell asso 98.5 5.6E-07 1.9E-11 69.3 10.5 110 311-423 28-142 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.5 2.7E-06 9.1E-11 67.0 14.5 98 242-340 10-108 (164)
168 2dba_A Smooth muscle cell asso 98.5 3.9E-07 1.3E-11 70.2 9.5 101 345-445 26-130 (148)
169 1elw_A TPR1-domain of HOP; HOP 98.5 2.9E-06 1E-10 62.1 13.9 96 173-272 6-101 (118)
170 4gcn_A Protein STI-1; structur 98.5 2.5E-06 8.4E-11 63.8 12.9 91 212-304 13-111 (127)
171 2kck_A TPR repeat; tetratricop 98.5 1.6E-06 5.4E-11 62.9 11.6 95 209-305 8-106 (112)
172 1elr_A TPR2A-domain of HOP; HO 98.5 1.5E-06 5E-11 65.1 11.4 100 173-276 6-112 (131)
173 1dce_A Protein (RAB geranylger 98.5 1.2E-05 3.9E-10 76.7 19.8 173 257-432 43-244 (567)
174 1elr_A TPR2A-domain of HOP; HO 98.5 3.9E-07 1.3E-11 68.4 7.9 111 313-426 6-124 (131)
175 1wao_1 Serine/threonine protei 98.5 3.3E-07 1.1E-11 85.8 8.8 119 318-438 13-134 (477)
176 1hxi_A PEX5, peroxisome target 98.5 1.8E-06 6E-11 64.0 10.5 93 175-271 21-113 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 8.1E-07 2.8E-11 82.7 10.6 94 347-440 317-412 (457)
178 2xev_A YBGF; tetratricopeptide 98.4 3.1E-07 1.1E-11 69.0 6.5 102 315-418 6-114 (129)
179 2hr2_A Hypothetical protein; a 98.4 3.1E-07 1.1E-11 70.3 6.0 106 312-417 12-139 (159)
180 2if4_A ATFKBP42; FKBP-like, al 98.4 4.9E-07 1.7E-11 80.5 7.8 151 276-446 179-331 (338)
181 3ro3_A PINS homolog, G-protein 98.4 8.3E-07 2.8E-11 69.4 8.1 62 381-442 90-157 (164)
182 2xev_A YBGF; tetratricopeptide 98.4 1.4E-05 4.8E-10 59.6 14.0 98 174-275 5-108 (129)
183 3k9i_A BH0479 protein; putativ 98.4 1.5E-07 5.3E-12 69.4 2.8 93 323-416 2-97 (117)
184 3k9i_A BH0479 protein; putativ 98.3 2.8E-07 9.5E-12 68.0 3.8 86 289-376 3-90 (117)
185 3rkv_A Putative peptidylprolyl 98.3 9.3E-07 3.2E-11 69.4 7.1 81 346-426 62-144 (162)
186 3ro3_A PINS homolog, G-protein 98.3 1.7E-06 5.8E-11 67.5 8.4 140 243-411 9-160 (164)
187 1wao_1 Serine/threonine protei 98.3 1.1E-05 3.8E-10 75.4 15.2 117 252-371 15-134 (477)
188 1ihg_A Cyclophilin 40; ppiase 98.3 1.6E-06 5.4E-11 78.2 9.0 91 346-436 272-363 (370)
189 2l6j_A TPR repeat-containing p 98.3 1.9E-07 6.7E-12 67.9 1.6 95 346-440 3-104 (111)
190 2if4_A ATFKBP42; FKBP-like, al 98.2 5.8E-06 2E-10 73.6 10.4 154 242-414 178-333 (338)
191 2hr2_A Hypothetical protein; a 98.2 5.9E-06 2E-10 63.2 8.9 98 347-444 11-132 (159)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-05 5.9E-10 73.7 13.7 121 171-293 268-402 (457)
193 3rkv_A Putative peptidylprolyl 98.2 1.6E-05 5.4E-10 62.3 11.5 109 172-305 12-126 (162)
194 3n71_A Histone lysine methyltr 98.1 2.4E-05 8.2E-10 72.8 12.2 136 39-200 317-464 (490)
195 3n71_A Histone lysine methyltr 98.1 3.9E-06 1.3E-10 78.0 6.2 124 321-444 319-465 (490)
196 1ihg_A Cyclophilin 40; ppiase 98.1 5E-05 1.7E-09 68.3 13.3 63 242-304 272-335 (370)
197 1na3_A Designed protein CTPR2; 98.1 7.6E-06 2.6E-10 56.7 6.3 82 347-428 9-91 (91)
198 2l6j_A TPR repeat-containing p 98.0 6.9E-06 2.4E-10 59.4 5.7 98 29-136 2-105 (111)
199 2kat_A Uncharacterized protein 98.0 5.2E-06 1.8E-10 60.8 5.0 83 329-413 3-86 (115)
200 3ma5_A Tetratricopeptide repea 98.0 1.5E-05 5E-10 56.6 7.0 67 346-412 6-73 (100)
201 3lvg_A Clathrin heavy chain 1; 97.9 4.1E-07 1.4E-11 81.1 -3.3 241 29-297 52-325 (624)
202 1dce_A Protein (RAB geranylger 97.8 0.00092 3.2E-08 63.7 17.4 172 187-365 45-244 (567)
203 1klx_A Cysteine rich protein B 97.8 0.00042 1.4E-08 52.4 12.1 111 185-306 9-127 (138)
204 2kat_A Uncharacterized protein 97.8 0.00018 6.2E-09 52.3 9.7 79 189-271 3-81 (115)
205 3ma5_A Tetratricopeptide repea 97.8 4.1E-05 1.4E-09 54.2 5.5 64 379-442 6-69 (100)
206 1zu2_A Mitochondrial import re 97.7 9.4E-05 3.2E-09 56.4 7.6 96 183-282 14-130 (158)
207 1klx_A Cysteine rich protein B 97.7 0.0005 1.7E-08 51.9 11.7 111 291-411 10-128 (138)
208 1na3_A Designed protein CTPR2; 97.7 0.00022 7.7E-09 49.0 9.0 84 29-122 7-90 (91)
209 3bee_A Putative YFRE protein; 97.6 0.00017 5.7E-09 50.0 6.8 68 379-446 5-75 (93)
210 1zu2_A Mitochondrial import re 97.6 0.0002 6.8E-09 54.7 7.3 98 218-319 13-132 (158)
211 2kc7_A BFR218_protein; tetratr 97.5 4.3E-05 1.5E-09 53.9 2.6 65 353-417 6-72 (99)
212 3ly7_A Transcriptional activat 97.4 0.012 4.2E-07 51.7 17.5 141 169-314 192-346 (372)
213 3lvg_A Clathrin heavy chain 1; 97.4 0.00011 3.6E-09 66.0 4.5 349 29-410 81-510 (624)
214 3ly7_A Transcriptional activat 97.4 0.0071 2.4E-07 53.1 15.3 135 202-340 189-339 (372)
215 1qsa_A Protein (soluble lytic 97.3 0.054 1.8E-06 51.7 21.9 116 290-408 228-347 (618)
216 3qww_A SET and MYND domain-con 97.2 0.00083 2.8E-08 61.4 8.0 92 42-135 309-408 (433)
217 2kc7_A BFR218_protein; tetratr 97.2 0.00043 1.5E-08 48.6 4.8 61 386-446 6-67 (99)
218 3qww_A SET and MYND domain-con 97.2 0.00059 2E-08 62.3 6.7 87 323-409 310-411 (433)
219 3mkq_A Coatomer beta'-subunit; 97.1 0.062 2.1E-06 53.8 21.5 156 82-270 607-763 (814)
220 3mkq_A Coatomer beta'-subunit; 97.1 0.013 4.5E-07 58.7 16.1 125 148-301 607-732 (814)
221 3qwp_A SET and MYND domain-con 97.0 0.0021 7.2E-08 58.8 8.9 98 36-135 292-397 (429)
222 3qwp_A SET and MYND domain-con 97.0 0.00061 2.1E-08 62.3 4.6 94 318-411 294-402 (429)
223 3bee_A Putative YFRE protein; 96.9 0.014 4.8E-07 40.2 10.2 64 242-305 5-72 (93)
224 3mkq_B Coatomer subunit alpha; 96.8 0.1 3.5E-06 40.4 15.3 44 152-197 17-60 (177)
225 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0033 1.1E-07 44.6 6.3 69 351-419 9-85 (104)
226 1wy6_A Hypothetical protein ST 96.7 0.045 1.5E-06 39.7 11.6 140 287-446 18-157 (172)
227 1pc2_A Mitochondria fission pr 96.7 0.005 1.7E-07 46.4 7.1 90 327-418 14-109 (152)
228 3u64_A Protein TP_0956; tetrat 96.6 0.0031 1E-07 53.1 5.6 83 327-412 179-272 (301)
229 4ady_A RPN2, 26S proteasome re 96.5 0.63 2.2E-05 46.4 21.6 255 150-407 384-656 (963)
230 2v5f_A Prolyl 4-hydroxylase su 96.3 0.042 1.4E-06 38.7 9.6 34 242-275 45-78 (104)
231 1pc2_A Mitochondria fission pr 96.3 0.085 2.9E-06 39.7 11.4 86 187-275 14-103 (152)
232 1wy6_A Hypothetical protein ST 96.2 0.22 7.5E-06 36.2 13.8 140 182-344 18-157 (172)
233 4h7y_A Dual specificity protei 96.1 0.17 5.7E-06 37.7 11.9 36 169-206 11-52 (161)
234 3mkq_B Coatomer subunit alpha; 96.1 0.22 7.7E-06 38.5 13.1 99 218-336 16-114 (177)
235 4ady_A RPN2, 26S proteasome re 96.0 1.4 4.9E-05 43.9 23.1 304 118-429 383-721 (963)
236 1nzn_A CGI-135 protein, fissio 96.0 0.057 2E-06 39.1 8.9 91 326-418 16-112 (126)
237 1nzn_A CGI-135 protein, fissio 95.5 0.16 5.4E-06 36.8 9.5 90 184-275 14-106 (126)
238 1qsa_A Protein (soluble lytic 95.5 1.9 6.4E-05 41.3 32.7 114 186-304 229-347 (618)
239 4b4t_P 26S proteasome regulato 95.4 0.65 2.2E-05 42.6 15.8 15 326-340 372-386 (445)
240 3u64_A Protein TP_0956; tetrat 95.4 0.14 4.7E-06 43.2 10.1 97 12-116 180-284 (301)
241 4h7y_A Dual specificity protei 95.3 0.039 1.3E-06 41.0 5.9 114 309-424 11-138 (161)
242 3ffl_A Anaphase-promoting comp 95.3 0.3 1E-05 37.1 10.8 35 243-277 122-156 (167)
243 4fhn_B Nucleoporin NUP120; pro 95.1 0.98 3.3E-05 47.1 18.0 81 244-326 900-986 (1139)
244 4gns_B Protein CSD3, chitin bi 94.0 0.12 4E-06 50.4 7.5 55 387-441 344-398 (754)
245 3lpz_A GET4 (YOR164C homolog); 94.0 2.7 9.4E-05 36.3 20.4 151 243-408 35-215 (336)
246 4fhn_B Nucleoporin NUP120; pro 94.0 4.8 0.00016 42.0 19.9 52 213-270 818-869 (1139)
247 3ffl_A Anaphase-promoting comp 94.0 0.36 1.2E-05 36.7 8.5 128 246-387 23-162 (167)
248 2wpv_A GET4, UPF0363 protein Y 93.9 2.7 9.4E-05 36.0 17.3 154 243-409 33-217 (312)
249 3txn_A 26S proteasome regulato 93.8 3.6 0.00012 36.7 20.4 285 112-411 22-345 (394)
250 4b4t_P 26S proteasome regulato 93.7 2.4 8.1E-05 38.8 15.2 43 123-165 30-81 (445)
251 3ltm_A Alpha-REP4; protein eng 93.0 2.9 9.8E-05 33.5 20.0 17 108-124 32-48 (211)
252 3ltm_A Alpha-REP4; protein eng 93.0 2.9 9.8E-05 33.5 19.4 186 124-325 17-202 (211)
253 2ff4_A Probable regulatory pro 92.6 0.54 1.9E-05 42.2 9.2 73 245-317 173-251 (388)
254 2ff4_A Probable regulatory pro 92.6 0.18 6E-06 45.4 6.0 58 350-407 174-232 (388)
255 1v54_E Cytochrome C oxidase po 92.0 0.92 3.1E-05 31.0 7.2 63 291-355 25-87 (109)
256 3txn_A 26S proteasome regulato 91.9 6.6 0.00023 35.0 21.4 159 142-302 21-207 (394)
257 4gns_B Protein CSD3, chitin bi 91.8 2.4 8.1E-05 41.4 12.9 128 245-374 250-398 (754)
258 3lpz_A GET4 (YOR164C homolog); 91.0 7.2 0.00025 33.7 21.1 166 145-339 40-215 (336)
259 1y8m_A FIS1; mitochondria, unk 90.1 1.5 5.1E-05 32.4 7.5 73 344-416 36-113 (144)
260 3o48_A Mitochondria fission 1 89.6 0.53 1.8E-05 34.2 4.7 72 345-416 38-114 (134)
261 1v54_E Cytochrome C oxidase po 89.5 1.6 5.5E-05 29.8 6.6 50 326-376 25-74 (109)
262 3ltj_A Alpharep-4; protein eng 89.5 6.6 0.00022 31.0 19.8 74 113-186 32-105 (201)
263 3o48_A Mitochondria fission 1 89.0 4 0.00014 29.7 8.9 71 204-275 37-110 (134)
264 2y69_E Cytochrome C oxidase su 88.9 2.1 7.2E-05 31.1 7.2 63 291-355 68-130 (152)
265 1zbp_A Hypothetical protein VP 88.4 5.5 0.00019 33.1 10.6 119 284-413 5-133 (273)
266 2wpv_A GET4, UPF0363 protein Y 87.2 13 0.00046 31.8 21.9 182 119-340 23-217 (312)
267 1oyz_A Hypothetical protein YI 86.8 13 0.00044 31.1 20.6 17 242-258 141-157 (280)
268 4b4t_R RPN7, 26S proteasome re 86.3 11 0.00036 34.3 12.5 57 246-302 134-194 (429)
269 2y69_E Cytochrome C oxidase su 86.0 3 0.0001 30.3 6.6 49 327-376 69-117 (152)
270 3esl_A Checkpoint serine/threo 85.9 3.5 0.00012 32.5 7.6 50 396-445 95-146 (202)
271 1y8m_A FIS1; mitochondria, unk 82.0 13 0.00045 27.4 11.8 70 204-274 36-108 (144)
272 3ltj_A Alpharep-4; protein eng 80.8 18 0.00063 28.3 20.5 51 136-186 24-74 (201)
273 1oyz_A Hypothetical protein YI 79.3 26 0.0009 29.2 19.2 125 167-305 138-263 (280)
274 4a1g_A Mitotic checkpoint seri 79.1 7.2 0.00025 29.2 6.8 49 399-447 84-134 (152)
275 1zbp_A Hypothetical protein VP 77.3 30 0.001 28.7 14.0 114 215-340 5-129 (273)
276 4b4t_R RPN7, 26S proteasome re 76.2 22 0.00075 32.2 10.7 96 278-373 133-234 (429)
277 2wvi_A Mitotic checkpoint seri 74.6 11 0.00036 28.7 6.7 29 381-409 97-125 (164)
278 4b4t_S RPN3, 26S proteasome re 72.5 29 0.00099 32.1 10.3 59 141-199 232-298 (523)
279 1ug3_A EIF4GI, eukaryotic prot 72.5 48 0.0016 28.8 17.5 144 113-268 15-166 (339)
280 2uwj_G Type III export protein 71.9 21 0.00071 24.4 8.9 86 222-315 21-106 (115)
281 1wdy_A 2-5A-dependent ribonucl 71.8 39 0.0013 27.9 10.8 82 81-167 43-129 (285)
282 2uwj_G Type III export protein 71.7 21 0.00072 24.3 8.9 51 148-200 47-97 (115)
283 3bqo_A Telomeric repeat-bindin 71.3 35 0.0012 26.7 12.0 69 363-431 94-168 (211)
284 2p58_C Putative type III secre 70.5 23 0.00078 24.2 9.7 86 222-315 22-107 (116)
285 2p58_C Putative type III secre 68.4 26 0.00087 24.0 9.0 49 149-199 49-97 (116)
286 2d2s_A Exocyst complex compone 67.7 21 0.00072 29.1 7.6 95 36-135 23-117 (235)
287 4aez_C MAD3, mitotic spindle c 65.5 14 0.00049 29.6 6.0 30 381-410 151-180 (223)
288 3esl_A Checkpoint serine/threo 65.3 49 0.0017 26.1 11.3 52 221-272 93-144 (202)
289 4b4t_S RPN3, 26S proteasome re 61.9 1E+02 0.0034 28.6 13.3 62 242-305 230-299 (523)
290 4gq2_M Nucleoporin NUP120; bet 56.1 1.2E+02 0.004 30.9 12.3 129 146-290 816-950 (950)
291 4a1g_A Mitotic checkpoint seri 56.0 61 0.0021 24.2 10.8 46 226-271 84-129 (152)
292 1k1a_A B-cell lymphoma 3-encod 55.8 76 0.0026 25.2 12.0 87 39-135 14-102 (241)
293 2ion_A PDCD4, programmed cell 52.5 42 0.0015 25.1 6.4 66 245-312 11-81 (152)
294 4ets_A Ferric uptake regulatio 51.3 69 0.0024 24.2 7.5 71 47-125 13-85 (162)
295 3eu9_A Huntingtin-interacting 50.7 78 0.0027 25.0 8.6 78 84-165 16-98 (240)
296 4gq2_M Nucleoporin NUP120; bet 49.4 1.3E+02 0.0044 30.7 11.3 130 213-361 816-950 (950)
297 2es9_A Putative cytoplasmic pr 48.9 19 0.00065 23.7 3.3 56 47-107 13-68 (115)
298 3kea_A K1L; tropism, ANK repea 48.9 1.2E+02 0.0039 25.3 9.6 146 116-268 35-183 (285)
299 2zu6_B Programmed cell death p 46.1 95 0.0032 26.5 8.3 198 246-445 6-233 (307)
300 3bu8_A Telomeric repeat-bindin 45.3 82 0.0028 25.0 6.9 22 355-376 122-143 (235)
301 2ijq_A Hypothetical protein; s 43.8 96 0.0033 23.4 7.0 53 358-410 43-105 (161)
302 2d2s_A Exocyst complex compone 43.1 1.2E+02 0.0041 24.6 8.1 23 177-199 24-46 (235)
303 2ion_A PDCD4, programmed cell 42.6 22 0.00075 26.6 3.4 65 33-106 11-77 (152)
304 4aez_C MAD3, mitotic spindle c 42.0 1.3E+02 0.0046 24.1 9.1 47 225-271 132-178 (223)
305 2nsz_A Programmed cell death p 41.7 95 0.0033 22.3 10.0 66 245-312 9-79 (129)
306 3jxi_A Vanilloid receptor-rela 40.9 1.2E+02 0.0041 24.5 8.3 121 38-164 9-161 (260)
307 3hra_A Ankyrin repeat family p 37.9 1.3E+02 0.0045 22.9 9.9 112 41-166 12-129 (201)
308 2nsz_A Programmed cell death p 37.5 1.1E+02 0.0038 21.9 9.4 57 144-200 11-72 (129)
309 3eiq_C Programmed cell death p 35.2 2.3E+02 0.0078 24.8 18.2 195 111-314 56-291 (358)
310 2wvi_A Mitotic checkpoint seri 34.2 1.5E+02 0.0052 22.4 10.6 46 226-271 79-124 (164)
311 3ygs_P Procaspase 9; apoptosis 33.6 68 0.0023 21.7 4.5 36 124-159 52-87 (97)
312 1bpo_A Protein (clathrin); cla 33.5 2.8E+02 0.0096 25.3 11.3 95 31-135 361-455 (494)
313 2r9g_A AAA ATPase, central reg 33.5 1.7E+02 0.006 22.9 10.4 65 172-238 12-84 (204)
314 3bu8_A Telomeric repeat-bindin 33.1 1.9E+02 0.0063 23.1 8.0 24 249-272 120-143 (235)
315 3bge_A Predicted ATPase; struc 32.9 1.8E+02 0.0061 22.8 9.0 47 174-221 7-56 (201)
316 2etb_A Transient receptor pote 32.8 1.9E+02 0.0065 23.2 8.7 87 80-168 5-115 (256)
317 2ijq_A Hypothetical protein; s 32.4 98 0.0033 23.4 5.5 47 88-134 46-100 (161)
318 2fe3_A Peroxide operon regulat 32.2 1.5E+02 0.0051 21.7 6.8 56 202-259 17-72 (145)
319 2fe3_A Peroxide operon regulat 31.9 1.5E+02 0.0051 21.7 7.2 58 62-125 15-72 (145)
320 3ygs_P Procaspase 9; apoptosis 31.4 63 0.0021 21.8 4.0 39 154-192 51-89 (97)
321 2o03_A Probable zinc uptake re 31.1 89 0.003 22.4 5.1 33 290-322 24-56 (131)
322 1mzb_A Ferric uptake regulatio 30.9 1.5E+02 0.0051 21.4 6.5 58 62-125 11-69 (136)
323 3kea_A K1L; tropism, ANK repea 30.6 2.3E+02 0.0078 23.4 9.5 15 120-134 103-117 (285)
324 1wgl_A TOLL-interacting protei 30.4 46 0.0016 20.1 2.8 22 86-107 35-56 (59)
325 1bpo_A Protein (clathrin); cla 30.0 2.4E+02 0.0083 25.7 8.4 45 290-337 343-387 (494)
326 1oai_A Nuclear RNA export fact 29.5 40 0.0014 20.3 2.4 24 184-207 33-56 (59)
327 2w57_A Ferric uptake regulatio 29.5 1.7E+02 0.0058 21.6 6.6 58 62-125 10-68 (150)
328 2b7e_A PRE-mRNA processing pro 29.3 61 0.0021 19.6 3.1 33 187-220 2-35 (59)
329 2xig_A Ferric uptake regulatio 29.1 1.7E+02 0.0059 21.5 8.0 58 62-125 20-77 (150)
330 3kae_A CDC27, possible protein 28.1 2E+02 0.007 22.0 13.8 26 313-338 116-141 (242)
331 1n11_A Ankyrin; clathrin, BAND 27.9 3.2E+02 0.011 24.2 10.8 301 80-404 17-332 (437)
332 3ctd_A Putative ATPase, AAA fa 27.9 2.3E+02 0.0078 22.5 9.6 70 169-239 30-107 (213)
333 3ph0_C ASCG; type III secretio 27.9 76 0.0026 18.9 3.2 21 35-55 26-46 (61)
334 3eu9_A Huntingtin-interacting 27.8 2.2E+02 0.0075 22.3 9.0 113 40-167 15-133 (240)
335 1ya0_A SMG-7 transcript varian 26.2 1.1E+02 0.0039 28.1 6.0 64 362-425 167-231 (497)
336 3eyy_A Putative iron uptake re 26.1 1.6E+02 0.0055 21.5 5.9 57 62-125 12-68 (145)
337 3mwm_A ZUR, putative metal upt 26.0 81 0.0028 23.0 4.2 14 326-339 28-41 (139)
338 1k1a_A B-cell lymphoma 3-encod 25.9 2.4E+02 0.0082 22.1 8.6 87 81-167 13-103 (241)
339 1a1w_A FADD protein; apoptosis 25.6 1E+02 0.0034 20.6 4.1 55 385-439 25-82 (91)
340 1wdy_A 2-5A-dependent ribonucl 25.2 2.7E+02 0.0092 22.4 13.4 14 358-371 227-240 (285)
341 3aji_A 26S proteasome non-ATPa 25.0 2.5E+02 0.0084 21.9 9.5 115 38-165 10-128 (231)
342 4ets_A Ferric uptake regulatio 25.0 2.2E+02 0.0075 21.3 7.1 70 188-259 14-85 (162)
343 2w57_A Ferric uptake regulatio 24.8 2.1E+02 0.0072 21.0 6.9 63 300-364 6-69 (150)
344 2crb_A Nuclear receptor bindin 24.6 1.2E+02 0.0042 20.2 4.2 26 382-407 17-42 (97)
345 2f6m_A Suppressor protein STP2 24.6 1E+02 0.0035 19.0 3.6 47 32-87 3-49 (65)
346 2o03_A Probable zinc uptake re 24.6 1.4E+02 0.0047 21.4 5.2 49 77-125 13-61 (131)
347 2keb_A DNA polymerase subunit 24.0 1.7E+02 0.0059 19.8 6.9 61 293-353 26-88 (101)
348 3gvo_A Pumilio 2, pumilio homo 24.0 3E+02 0.01 23.8 8.2 57 351-408 218-278 (351)
349 3mwm_A ZUR, putative metal upt 24.0 1.4E+02 0.0046 21.7 5.1 51 75-125 14-64 (139)
350 1ug3_A EIF4GI, eukaryotic prot 23.5 3.6E+02 0.012 23.2 12.8 58 143-200 14-75 (339)
351 2xig_A Ferric uptake regulatio 23.4 2.2E+02 0.0077 20.9 6.9 56 202-259 22-77 (150)
352 2r9g_A AAA ATPase, central reg 22.3 2.9E+02 0.0098 21.7 10.4 56 288-345 26-86 (204)
353 1mzb_A Ferric uptake regulatio 22.3 1.1E+02 0.0039 22.0 4.3 60 302-363 9-69 (136)
354 1te4_A Conserved protein MTH18 22.3 2.1E+02 0.0071 20.1 6.7 17 108-124 55-71 (131)
355 2etb_A Transient receptor pote 22.2 3E+02 0.01 21.9 10.6 121 38-164 6-157 (256)
356 1n11_A Ankyrin; clathrin, BAND 21.3 4.2E+02 0.015 23.3 12.0 301 38-374 18-335 (437)
357 1te4_A Conserved protein MTH18 21.3 2.2E+02 0.0075 20.0 6.5 17 274-290 85-101 (131)
358 3jxi_A Vanilloid receptor-rela 21.0 1.7E+02 0.0059 23.5 5.8 54 81-134 9-71 (260)
359 2qq8_A TBC1 domain family memb 20.2 3.5E+02 0.012 23.2 7.7 75 298-375 215-294 (334)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-39 Score=316.96 Aligned_cols=290 Identities=12% Similarity=-0.014 Sum_probs=254.7
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHH
Q 012879 150 LVKWGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQ 227 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 227 (454)
|.+.|++++|.++|+++.+ ++..+++.++..|.+.|++++|..+|+++.+. .+.+..++..++.++.+.|++++|.
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHH
Confidence 3345555556666666555 56778888999999999999999999999874 3557788999999999999999999
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 228 LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
.+++.+.+. .|.+..+++.++.+|.+.|++++|.++|+++.+..| +..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 360 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999876 466889999999999999999999999999988766 67899999999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CCc-
Q 012879 307 LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE------ITD- 379 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~- 379 (454)
+.+..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++... .|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 347789999999999999999999999999875 3447889999999999999999999999988654 466
Q ss_pred -HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 380 -VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 380 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
..+|..++.+|.+.|++++|++.++++++.+|.++.+|..++.+|.+.|++++|.+.++++.+.+..
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999886543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-37 Score=303.83 Aligned_cols=398 Identities=8% Similarity=0.004 Sum_probs=350.0
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
.+++..|+.++..|.+.|++++|+.+|+++. .. . | +..++..++.+|...|++++|..+++.+.. .++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~--~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 148 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DI--T--G---NPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNR 148 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HH--H--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGT
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hh--C--C---CchHHHHHHHHHHHcCcHHHHHHHHHHHhc--ccc
Confidence 3788999999999999999999999999997 32 3 6 778899999999999999999999998865 368
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCC-------------------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPER-------------------NLVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999965543 367999999999999999999999999874
Q ss_pred --CC-cchHHH--------------------------------------HHHHHHhcCChHHHHHHHHHHHHccCCCCCh
Q 012879 169 --RN-VVSWTG--------------------------------------IIDGYTRMNRSNEALALFRKMVACEYTEPSE 207 (454)
Q Consensus 169 --~~-~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 207 (454)
|+ ...+.. ++..|.+.|++++|.++|+++.+. +++.
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 305 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSS 305 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCH
T ss_pred hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchH
Confidence 32 222222 244566789999999999999874 5889
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHH
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGF 286 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 286 (454)
.++..++..+.+.|++++|..+|+++.+.+ |.+..++..++.++.+.|++++|.++|+++....| +..+++.++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 999999999999999999999999999874 55788899999999999999999999999987765 688999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998853 336789999999999999999999999999874 345788999999999999999999
Q ss_pred HHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC---C----CCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 367 EKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG---Y----GGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 367 ~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~----~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
.++|+++... +.+..+|..++..|.+.|++++|+++|+++.+..|. + ..+|..++.+|.+.|++++|.+.++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998776 446889999999999999999999999999998532 2 4578899999999999999999999
Q ss_pred HHhhccc
Q 012879 439 VMDERNA 445 (454)
Q Consensus 439 ~~~~~~~ 445 (454)
++.+.+.
T Consensus 541 ~~~~~~p 547 (597)
T 2xpi_A 541 QGLLLST 547 (597)
T ss_dssp HHHHHSS
T ss_pred HHHHhCC
Confidence 9988763
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.7e-32 Score=247.66 Aligned_cols=376 Identities=12% Similarity=0.067 Sum_probs=334.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALV 116 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 116 (454)
+...+.+.|++++|++.++.+. ...+. +...+..+...+...|++++|...++...+.. +.+..+|..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~---~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW---RQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 3556788999999999999998 65555 67788888889999999999999999998865 66788999999
Q ss_pred HHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHH
Q 012879 117 NMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEA 190 (454)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 190 (454)
.++.+.|++++|...|+++.+ |+ ..+|..+..++.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999874 54 45799999999999999999999998764 44 45677888899999999999
Q ss_pred HHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
...|+++.+. .+.+..++..+...+...|+++.|...++++.+. .|.+...+..+...+...|++++|...|++..
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 155 KACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999884 3556788999999999999999999999999997 46688899999999999999999999999998
Q ss_pred hcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 271 VERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 271 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
...| +..++..+...+...|++++|.+.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. .+.+..+
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 307 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHH
Confidence 8877 57889999999999999999999999999864 235678899999999999999999999999985 3567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+..+...+.+.|++++|.+.++++....| +..++..+..++.+.|++++|++.++++++..|.+...|..++.++...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999999988844 57889999999999999999999999999999999999999999888776
Q ss_pred C
Q 012879 429 R 429 (454)
Q Consensus 429 ~ 429 (454)
+
T Consensus 388 ~ 388 (388)
T 1w3b_A 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4.4e-29 Score=229.87 Aligned_cols=370 Identities=11% Similarity=0.016 Sum_probs=324.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...++.+.+..| .++..+..+...+.+.|++++|...++... ...+. +..+|..+..++..
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~---~~~p~------~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPL------LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------chHHHHHHHHHHHH
Confidence 35778889999999988876 777888888999999999999999999998 55544 88899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.|++++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999865 44566899999999999999999999999874 54 456778888899999999999999
Q ss_pred hhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 164 EEMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 164 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
+++.+ | +..+|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...+++..+. .|
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p 234 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP 234 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 98864 3 4578999999999999999999999999984 3556788999999999999999999999999987 56
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.+..++..+..+|.+.|++++|.+.|+++....| +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 6889999999999999999999999999998866 57789999999999999999999999998863 557889999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
.+...|++++|...++++.+. .+.+..++..+..+|.+.|++++|.+.|+++....| +...|..+...+...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999863 344578899999999999999999999999888745 56778888777766553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.5e-29 Score=235.53 Aligned_cols=186 Identities=10% Similarity=0.017 Sum_probs=168.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc---------hhHHHHHHHhhhhcCCCCch
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD---------VKSCQLIHGYGEKRGFTAFD 242 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 242 (454)
..++.+|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.+. ++.|.++|++|.+.|+.| |
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 35788899999999999999999999988 899999999999999987654 678999999999998777 9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
..+|++++.+|++.|++++|.++|++|.+. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999877 589999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA 360 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (454)
|++.|+.++|.+++++|.+. +..|+..||+.++..|...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999988 9999999999999888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.2e-28 Score=230.80 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHccCCCCCh-hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC---------
Q 012879 189 EALALFRKMVACEYTEPSE-ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC--------- 258 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 258 (454)
.+..+.+++.+. +..+.+ ..++.++.+|++.|++++|.++|++|.+.|+.| |..+|+.|+.+|++.+.
T Consensus 8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcch
Confidence 345555666665 554443 468889999999999999999999999999877 99999999999987765
Q ss_pred hhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 259 IFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 259 ~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
++.|.++|++|... .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999887 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcC
Q 012879 337 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFH 393 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~ 393 (454)
|.+. |+.||..+|++|+.+|++.|++++|.+++++|.+. .|+..||+.++..|...
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9998 99999999999999999999999999999999876 89999999999988753
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=8.6e-26 Score=212.14 Aligned_cols=385 Identities=7% Similarity=-0.038 Sum_probs=273.1
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH 89 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 89 (454)
+...+...+..+....+ .++..|..+...+.+.|++++|+.+|+.+. ...+. +..++..+..++...|+
T Consensus 7 ~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~g~ 75 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGK 75 (450)
T ss_dssp ----------------C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTC
T ss_pred ccccccccccccccccH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCc------cHHHHHHHHHHHHHCCC
Confidence 33444455555556665 888999999999999999999999999998 55544 78899999999999999
Q ss_pred cchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-c---hhHHHHHHHHHhcCCHHHHHHHH
Q 012879 90 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-L---VTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
+++|...++.+.+.+ +.+..++..+..+|.+.|++++|...|+++.+ |+ . .++..+...+...+
T Consensus 76 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 145 (450)
T 2y4t_A 76 SKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--------- 145 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH---------
Confidence 999999999999876 55678889999999999999999999998875 32 2 45555544432221
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH
Q 012879 164 EEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243 (454)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (454)
+..+...+...|++++|+..|+++.+ ..+.+..++..+..++...|++++|...++.+.+. .|.+.
T Consensus 146 ----------~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 211 (450)
T 2y4t_A 146 ----------LRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNT 211 (450)
T ss_dssp ----------HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCH
T ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 22344456667788888888887776 33456677777777888888888888888877775 34467
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSI------------ISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
.++..++.+|...|++++|...|+++....|+ ...+..+ ...+...|++++|...|+++.+.. |+
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~ 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 77888888888888888888888887776553 3344433 677788888888888888887742 33
Q ss_pred -----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHH
Q 012879 311 -----RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWR 384 (454)
Q Consensus 311 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 384 (454)
...+..+..++.+.|++++|...++.+.+. .+.+...+..+..+|...|++++|.+.++++....|+ ...+.
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 346777778888888888888888888764 2335778888888888888888888888887776443 45555
Q ss_pred HHHH------------HHHcCC-----ChhHHHHHHHH-HHHhhcCCCC----------cHHHHHHHHHhcCCcCcH
Q 012879 385 TLLG------------ACSFHG-----NVEMGERVTRK-ILEMERGYGG----------DYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 385 ~l~~------------~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a 433 (454)
.+.. .|...| +.+++.+.+++ +++..|+... .+..+..+|...|+.+..
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5542 233344 66778888887 6777776322 344566666666666544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-27 Score=223.06 Aligned_cols=400 Identities=8% Similarity=-0.062 Sum_probs=319.6
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.....|......+.+.|++++|+..|+++. ... | +..+|..+..++...|++++|...++.+.+.+ +.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 72 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWAL---ELK----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDY 72 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHC----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCC
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHH---hcC----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHH
Confidence 345677888889999999999999999998 433 5 88899999999999999999999999999876 556
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHH----------------------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLF---------------------- 163 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~---------------------- 163 (454)
..++..+..++.+.|++++|...|+++.+ ++......++..+.+......+.+.+
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 77899999999999999999999998764 23333334444333322222222211
Q ss_pred ----------------hhCCC---------C-CcchHHHHHHHHHh---cCChHHHHHHHHHHHH-----ccCC------
Q 012879 164 ----------------EEMPC---------R-NVVSWTGIIDGYTR---MNRSNEALALFRKMVA-----CEYT------ 203 (454)
Q Consensus 164 ----------------~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~------ 203 (454)
..... | +...+......+.. .|++++|+..|+++.+ ....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 11110 1 13344444444554 8999999999999987 2111
Q ss_pred -CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHH
Q 012879 204 -EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTS 281 (454)
Q Consensus 204 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 281 (454)
+.+..++..+...+...|+++.|...++.+.+.. |. ...+..+..++...|++++|...|+++....| +...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHH
Confidence 2335678888889999999999999999999873 53 88889999999999999999999999988765 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCC
Confidence 99999999999999999999988643 35668888889999999999999999999875 2345678888999999999
Q ss_pred ChHHHHHHHhcCCCCCCc-------HhHHHHHHHHHHc---CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 362 RLEQAEKTALGIPSEITD-------VVVWRTLLGACSF---HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
++++|.+.++++....|+ ..++..+...+.. .|++++|.+.++++++..|.+...+..++.++.+.|+++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 999999999987665222 3388899999999 999999999999999999998889999999999999999
Q ss_pred cHHHHHHHHhhccc
Q 012879 432 DAERLRRVMDERNA 445 (454)
Q Consensus 432 ~a~~~~~~~~~~~~ 445 (454)
+|.+.+++..+.+.
T Consensus 467 ~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 467 EAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=5.3e-26 Score=218.59 Aligned_cols=398 Identities=10% Similarity=0.002 Sum_probs=292.6
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.....|..+...+.+.|++++|+..|+++. ...+. +..+|..+..++...|++++|.+.++.+.+.+ +.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 92 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---ELDPN------EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDH 92 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cch
Confidence 456788999999999999999999999998 66655 88899999999999999999999999999876 557
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-------------------- 168 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------------------- 168 (454)
..++..+..++...|++++|...|+.+. .++......+..+...+....|...++.+..
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 7889999999999999999999997443 2222222223333344444455555544432
Q ss_pred -----------------CCcc---hHHHHHHHHHh--------cCChHHHHHHHHHHHHccCCCCCh-------hhHHhH
Q 012879 169 -----------------RNVV---SWTGIIDGYTR--------MNRSNEALALFRKMVACEYTEPSE-------ITILAV 213 (454)
Q Consensus 169 -----------------~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l 213 (454)
.+.. ....+...+.. .|++++|..+|+++.+. .+.+. .++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHH
Confidence 1111 22222222221 24788888888888764 22222 246666
Q ss_pred HHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCCh
Q 012879 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 292 (454)
...+...|+++.|...++.+.+. .| +...+..+..++...|++++|...|+++....| +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 77778888889999998888886 34 477788888888888999999999988887755 567888888888888999
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 012879 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (454)
++|...++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++
T Consensus 327 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999988887532 24567777888888889999999999888875 234466778888888889999999888888
Q ss_pred CCCCCC-------cHhHHHHHHHHHHcC----------CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHH
Q 012879 373 IPSEIT-------DVVVWRTLLGACSFH----------GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435 (454)
Q Consensus 373 ~~~~~p-------~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (454)
+....| ....+..+...+... |++++|+..++++++..|.+...+..++.++.+.|++++|.+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 765411 112244455666666 888999999999988888888888888999999999999998
Q ss_pred HHHHHhhccc
Q 012879 436 LRRVMDERNA 445 (454)
Q Consensus 436 ~~~~~~~~~~ 445 (454)
.+++..+...
T Consensus 484 ~~~~al~~~~ 493 (537)
T 3fp2_A 484 LFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhCC
Confidence 8888877543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-25 Score=213.64 Aligned_cols=395 Identities=9% Similarity=-0.062 Sum_probs=318.3
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...++...+.. |++.+|..+..++.+.|++++|+..|+.+. ...+. +..+|..+..++..
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKPD------YSKVLLRRASANEG 85 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCSC------CHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccChH------HHHHHHHHHHHHHH
Confidence 4567888999999998877 688999999999999999999999999998 66655 78899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHH----------------------------------
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF---------------------------------- 132 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---------------------------------- 132 (454)
.|++++|...|+.+.+.+ +++......++..+........+.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 445444444544444332222222211
Q ss_pred ----hhCCC---------C-CchhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-CcchHHHHH
Q 012879 133 ----DEMPE---------R-NLVTWNVMITGLVK---WGELEFARSLFEEMPC----------------R-NVVSWTGII 178 (454)
Q Consensus 133 ----~~~~~---------~-~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~ 178 (454)
..... | +...+......+.. .|++++|..+|+++.+ | +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11110 1 12333344444443 8999999999987654 1 245778889
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
..+...|++++|...|+++.+. . |+...+..+...+...|+++.|...++.+.+. .|.+..++..+..++...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999885 2 33888999999999999999999999999886 45578899999999999999
Q ss_pred hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 259 IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999988766 67788999999999999999999999998753 335678888899999999999999999999
Q ss_pred HHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 338 VEECEVLPD----IKHYGCLIDMLGR---AGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 338 ~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+...-.++ ...+..+..++.. .|++++|.+.++++.... .+..++..+...+...|++++|.+.++++++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 875222222 3488899999999 999999999999887663 35778899999999999999999999999999
Q ss_pred hcCCCCcHHHH
Q 012879 410 ERGYGGDYVLM 420 (454)
Q Consensus 410 ~~~~~~~~~~l 420 (454)
.|.++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 99876665544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3e-25 Score=208.41 Aligned_cols=326 Identities=10% Similarity=0.049 Sum_probs=261.3
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHH
Q 012879 106 QSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIID 179 (454)
Q Consensus 106 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 179 (454)
+.+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+ .+..++..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44566777777777778888888888777653 3456777777778888888888888877653 34567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCCCh---hhHHhH------------HHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 180 GYTRMNRSNEALALFRKMVACEYTEPSE---ITILAV------------LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
+|...|++++|...|+++.+. .+.+. ..+..+ ...+...|+++.|...++.+.+. .|.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 888888888888888888763 22333 444444 44588999999999999999987 466889
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH------
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV------ 317 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------ 317 (454)
++..++.+|.+.|++++|.+.|+++....| +..++..+...|...|++++|...|+++.+... .+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 999999999999999999999999988755 788999999999999999999999999987532 233444444
Q ss_pred ------HHHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHH
Q 012879 318 ------LNACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRT 385 (454)
Q Consensus 318 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 385 (454)
...+...|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|.+.++++....| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78889999999999999999875 343 44788899999999999999999999876534 6889999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH------------HHhcC-----CcCcHHHHHHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI------------LAGVG-----RFGDAERLRRV 439 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 439 (454)
+..+|...|++++|...++++++..|.++..+..+..+ |...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999988888888744 44445 44556666665
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.3e-23 Score=197.67 Aligned_cols=388 Identities=8% Similarity=-0.043 Sum_probs=302.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...++...+..| .++.+|..+...|.+.|++++|++.|+++. ...+. +..++..+..++..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKAL---EIKPD------HSKALLRRASANES 105 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCc------hHHHHHHHHHHHHH
Confidence 46788899999999999887 889999999999999999999999999998 66655 78899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----------------------------
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----------------------------- 137 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------------------- 137 (454)
.|++++|...++ ..... |+.. ...+..+...+....|...++.+..
T Consensus 106 ~g~~~~A~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLN--GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhcC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999996 33322 2211 1122233334444555555555532
Q ss_pred --------CCch---hHHHHHHHHH--------hcCCHHHHHHHHhhCCC--CC--------cchHHHHHHHHHhcCChH
Q 012879 138 --------RNLV---TWNVMITGLV--------KWGELEFARSLFEEMPC--RN--------VVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 138 --------~~~~---~~~~ll~~~~--------~~~~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~ 188 (454)
.+.. ....+...+. ..|++++|..+|+++.+ |+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111 2222222222 22588999999998876 33 225677778899999999
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+|...|+++.+. .|+..++..+...+...|+++.|...++.+.+. .|.+..++..+..++...|++++|...|++
T Consensus 261 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 261 DAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999985 456888999999999999999999999999987 455888999999999999999999999999
Q ss_pred hhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC--
Q 012879 269 ISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-- 345 (454)
Q Consensus 269 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 345 (454)
+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...-.+
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 988866 56789999999999999999999999998864 33566888889999999999999999999887521111
Q ss_pred --ChhHHHHHHHHHHhc----------CChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 346 --DIKHYGCLIDMLGRA----------GRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 346 --~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
....+.....++... |++++|...|+++... +.+..++..+...|...|++++|.+.++++++..|.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 122244556677777 9999999999998776 345788999999999999999999999999999988
Q ss_pred CCCc
Q 012879 413 YGGD 416 (454)
Q Consensus 413 ~~~~ 416 (454)
+...
T Consensus 495 ~~~~ 498 (537)
T 3fp2_A 495 MDEK 498 (537)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 6544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.5e-21 Score=175.74 Aligned_cols=342 Identities=6% Similarity=-0.041 Sum_probs=232.0
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (454)
|+..+..+...+.+.|++++|+..|+.+. ...+. +..++..+..++...|++++|...++.+.+.. +.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcc
Confidence 56678888888999999999999999988 55544 77888889999999999999999999988865 4466
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCCCCc---h---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMPERNL---V---TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTR 183 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 183 (454)
..+..+..++...|++++|...|+++.+.++ . .+..+.... . ...+..+...+..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H------------HHHHHHHHHHHHH
Confidence 7888888888888888888888888765322 1 222221111 1 1123345667788
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|++++|+..++++.+. .+.+...+..+...+...|+++.|...++.+.+. .|.+...+..+..++...|++++|.
T Consensus 133 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 133 GADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888773 3455667777777777777777777777777765 4556777777777777777777777
Q ss_pred HHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 012879 264 KLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE 342 (454)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (454)
..|++..+..|+. ..+..+ ..+. .......+...+.+.|++++|...++.+.+...
T Consensus 209 ~~~~~a~~~~~~~~~~~~~~-----------------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 209 SEVRECLKLDQDHKRCFAHY-----------------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHH-----------------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhCccchHHHHHH-----------------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777776655532 222111 0000 011122234456666777777777777766411
Q ss_pred CCCCh--hHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 343 VLPDI--KHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 343 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
-.+.. ..+..+..++...|++++|.+.+++.....| +..++..+...+...|++++|.+.++++++..|.+...+..
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11110 2234466677777777777777777665533 56677777888888888888888888888887777766666
Q ss_pred HHHHHHhc
Q 012879 420 MYNILAGV 427 (454)
Q Consensus 420 l~~~~~~~ 427 (454)
+..+....
T Consensus 346 l~~~~~~~ 353 (359)
T 3ieg_A 346 LEKAQRLL 353 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.1e-21 Score=178.17 Aligned_cols=297 Identities=14% Similarity=0.037 Sum_probs=224.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIW 218 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (454)
.+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|+..++++.+. .+.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHH
Confidence 444555555666666666666655542 23456666666777777777777777776653 2334566666777777
Q ss_pred ccCchhHHHHHHHhhhhcCCCC---chHHHHHHH------------HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTA---FDIRVLNCL------------IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSI 282 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 282 (454)
..|++++|...++.+.+. .| .+...+..+ ...+...|++++|.+.|+++....| +...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 777777777777777665 33 344444444 6788889999999999999887765 67788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH-----------
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG----------- 351 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 351 (454)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 889999999999999999988764 3467788888888999999999999999988752 22233322
Q ss_pred -HHHHHHHhcCChHHHHHHHhcCCCCCCcH-----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 352 -CLIDMLGRAGRLEQAEKTALGIPSEITDV-----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 352 -~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
.+...+.+.|++++|.+.++++....|+. ..+..+...+...|++++|++.++++++..|.++..+..++.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 23667899999999999999887764442 335567889999999999999999999999999999999999999
Q ss_pred hcCCcCcHHHHHHHHhhccc
Q 012879 426 GVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~ 445 (454)
+.|++++|.+.+++..+.+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999988654
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=5.8e-20 Score=175.92 Aligned_cols=407 Identities=11% Similarity=0.007 Sum_probs=302.5
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHH
Q 012879 18 HSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLH 97 (454)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 97 (454)
++...+..| .|..+|..++. +.+.|++++|..+|+++. ...+. +...|...+..+.+.|++++|..+|
T Consensus 2 le~al~~~P--~~~~~w~~l~~-~~~~~~~~~a~~~~e~al---~~~P~------~~~~w~~~~~~~~~~~~~~~a~~~~ 69 (530)
T 2ooe_A 2 AEKKLEENP--YDLDAWSILIR-EAQNQPIDKARKTYERLV---AQFPS------SGRFWKLYIEAEIKAKNYDKVEKLF 69 (530)
T ss_dssp HHHHHHHCT--TCHHHHHHHHH-HHHSSCHHHHHHHHHHHH---TTCTT------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHhhhCC--CCHHHHHHHHH-HHHhCCHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555 68889999998 478899999999999998 66555 7889999999999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHHH-HhCCChhHHHH----HHhhCC-----C-CCchhHHHHHHHHHh---------cCCHH
Q 012879 98 AVISKVGFQSHVYVNTALVNMY-VSLGFLKDSSK----LFDEMP-----E-RNLVTWNVMITGLVK---------WGELE 157 (454)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~ll~~~~~---------~~~~~ 157 (454)
+.+++.. |++..|..++... ...|+.++|.+ +|+... . ++...|...+....+ .|+++
T Consensus 70 ~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 70 QRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 9998864 5777787777533 45688777765 666542 1 345678777776654 78999
Q ss_pred HHHHHHhhCCC-CCc---chHHHHHHHH-------------HhcCChHHHHHHHHHHH------Hc--cCCCCCh-----
Q 012879 158 FARSLFEEMPC-RNV---VSWTGIIDGY-------------TRMNRSNEALALFRKMV------AC--EYTEPSE----- 207 (454)
Q Consensus 158 ~A~~~~~~~~~-~~~---~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~--~~~~~~~----- 207 (454)
.|..+|++..+ |.. ..|....... ...+++..|..++.+.. +. ..++|+.
T Consensus 148 ~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 99999998775 322 2333222211 13456777777776532 11 0124442
Q ss_pred ---hhHHhHHHHHHcc----Cch----hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh-------cCChh-------HH
Q 012879 208 ---ITILAVLPAIWQN----GDV----KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK-------CGCIF-------SA 262 (454)
Q Consensus 208 ---~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a 262 (454)
..|...+...... ++. ..+..+|+++... .|.++..|..++..+.+ .|+++ +|
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 3444444333221 232 3677889998886 56688999999988876 79987 99
Q ss_pred HHHHHHhhh-cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 263 SKLFEDISV-ERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 263 ~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
..+|++... ..| +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|.++|+...
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999987 456 6788999999999999999999999999985 443 2578888888888999999999999998
Q ss_pred HhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC-
Q 012879 339 EECEVLPDIKHYGCLIDM-LGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG- 415 (454)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 415 (454)
+.. +.+...|...... +...|++++|..+|++.....| +...|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 384 ~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 641 2223333332222 3468999999999998877744 6788999999999999999999999999998766554
Q ss_pred ---cHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 416 ---DYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 416 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
.|...+......|+.+.+..+.+++.+.-
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778888889999999999998887643
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=2e-21 Score=177.24 Aligned_cols=284 Identities=11% Similarity=-0.061 Sum_probs=229.3
Q ss_pred HhcCCHHHHHH-HHhhCCC-----C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 151 VKWGELEFARS-LFEEMPC-----R--NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 151 ~~~~~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
...|++++|.+ .|++... | +...+..+...+...|++++|+..|+++.+ ..+.+..++..+..++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcC
Confidence 34578888887 7775543 1 346688888999999999999999999987 345677888899999999999
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHH---------------HHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWTS---------------IISGF 286 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~---------------l~~~~ 286 (454)
++.|...++++.+. .|.+..++..+..+|...|++++|.+.|+++....|+. ..+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999887 45588899999999999999999999999998876533 22221 23334
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
...|++++|...++++.+..... +..++..+...+...|++++|...++.+.+. .+.+..++..+..++...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998864221 5788899999999999999999999999875 23457889999999999999999
Q ss_pred HHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC-----------CCcHHHHHHHHHhcCCcCcH
Q 012879 366 AEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY-----------GGDYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 366 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 433 (454)
|.+.++++... +.+..++..+..+|...|++++|...++++++..|.+ ...|..++.++...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998766 3457889999999999999999999999999999887 67899999999999999999
Q ss_pred HHHHHHH
Q 012879 434 ERLRRVM 440 (454)
Q Consensus 434 ~~~~~~~ 440 (454)
..++++-
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9987643
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.5e-21 Score=170.22 Aligned_cols=247 Identities=12% Similarity=0.001 Sum_probs=126.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
.+..++.++...|++++|..+++++.+. .+.+...+..+...+...| +++.|...++++.+. .|.+...+..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 133 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGH 133 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3344444445555555555555555442 2233444445555555555 555555555555443 2334445555555
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 330 (454)
++...|++++|...|+++....| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 55555555555555555554433 23444445555555555555555555555432 22344455555555555555555
Q ss_pred HHHHHHHHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 331 LNFFDKMVEECE-------VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 331 ~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
...++.+.+... .+....++..+..+|...|++++|.+.++++... +.+..++..+...+...|++++|.+.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 555555544310 0222345555555555556665555555555443 22344555555556666666666666
Q ss_pred HHHHHHhhcCCCCcHHHHHHHH
Q 012879 403 TRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
++++++..|.++..+..++.++
T Consensus 293 ~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHccCCCchHHHHHHHHHH
Confidence 6666655555555555555555
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.2e-20 Score=165.65 Aligned_cols=287 Identities=13% Similarity=0.000 Sum_probs=233.4
Q ss_pred CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHH
Q 012879 105 FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGII 178 (454)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 178 (454)
.+.+...+..+...+...|++++|..+|+++.+ .+...+..++..+...|++++|..+++++.+ .+...+..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 456677777888888888888888888888764 3445666777888888899988888887764 3567888888
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 179 DGYTRMN-RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 179 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
..+...| ++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+. .|.+...+..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHh
Confidence 8999999 899999999998873 3456778889999999999999999999999887 3446677777999999999
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHhcCCChH
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVG--------LKPNRVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~~~~~ 328 (454)
++++|...|+++....| +...+..+...+...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999988766 67788899999999999999999999987631 1334568888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHH-HcCCChh
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGAC-SFHGNVE 397 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 397 (454)
+|...++.+.+. .+.+...+..+..+|.+.|++++|.+.++++....| +...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999875 234577889999999999999999999999998855 667788888877 4566653
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.5e-19 Score=168.03 Aligned_cols=367 Identities=11% Similarity=-0.011 Sum_probs=303.5
Q ss_pred hhhhhhHHHHHHHHHc----cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc----cCCcchHhHHHHH
Q 012879 28 LHHSQLFNTLLHFYSL----AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT----LSHPNLGTQLHAV 99 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 99 (454)
..++.++..+...|.. .+++++|+..|++.. +.+ +...+..|...+.. .+++++|...|++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~---~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA---EQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH---HCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3567888888888888 899999999999997 443 66688888888888 8999999999999
Q ss_pred HHHcCCCCCchhHHHHHHHHHh----CCChhHHHHHHhhCCC-CCchhHHHHHHHHHh----cCCHHHHHHHHhhCCC-C
Q 012879 100 ISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDEMPE-RNLVTWNVMITGLVK----WGELEFARSLFEEMPC-R 169 (454)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~-~ 169 (454)
..+.| ++..+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+ .
T Consensus 105 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 105 AALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 98876 56677778888888 8899999999998875 456678888888887 7899999999987654 5
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCc
Q 012879 170 NVVSWTGIIDGYTR----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAF 241 (454)
Q Consensus 170 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 241 (454)
+...+..+...|.. .+++++|+.+|++..+. .+...+..+...+.. .++.++|...+++..+.+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 253 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---- 253 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 67788888888888 89999999999999885 356777788888875 889999999999998875
Q ss_pred hHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHH
Q 012879 242 DIRVLNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGFAMH-----GMGKEAVENFGRMQKVGLKPNRV 312 (454)
Q Consensus 242 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~ 312 (454)
++..+..+...|.. .+++++|...|++..+. .+...+..+...|... +++++|...|++..+.| +..
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 56677788888888 89999999999998774 4667778888888887 89999999999999875 345
Q ss_pred HHHHHHHHHhcCC---ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHH
Q 012879 313 TFLSVLNACSHGG---LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRT 385 (454)
Q Consensus 313 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 385 (454)
.+..+...+...| ++++|.++|+...+. .+...+..+...|.. .+++++|.++|++..+. .+...+..
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~ 404 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHH
Confidence 6666666776656 889999999999875 357788888899988 89999999999987765 46778888
Q ss_pred HHHHHHc----CCChhHHHHHHHHHHHhhcC---CCCcHHHHHHHHH
Q 012879 386 LLGACSF----HGNVEMGERVTRKILEMERG---YGGDYVLMYNILA 425 (454)
Q Consensus 386 l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 425 (454)
+...|.. .++.++|...|+++.+.+|. ++.....++.++.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 9999987 89999999999999999943 5555555555444
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=8.7e-21 Score=172.86 Aligned_cols=264 Identities=8% Similarity=-0.073 Sum_probs=219.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
+...+..+...+.+.|++++|+..|+++.+. .+.+..++..+...+...|++++|...++++.+. .|.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 4556888899999999999999999999884 4567888999999999999999999999999887 46578899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCC-hh----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcHHHHHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKN-LV----------SWTSIISGFAMHGMGKEAVENFGRMQKVGLK-PNRVTFLSV 317 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 317 (454)
..+|...|++++|...|+++....|+ .. .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999999886553 22 2334578889999999999999999886422 257888999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCCh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 396 (454)
...+...|++++|...++++.+. .+.+..++..+..+|...|++++|.+.|+++....| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999875 344678899999999999999999999999877644 578899999999999999
Q ss_pred hHHHHHHHHHHHhhcC------------CCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 397 EMGERVTRKILEMERG------------YGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
++|...++++++..|. +...|..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887 256788999999999999888877665
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-19 Score=171.52 Aligned_cols=367 Identities=10% Similarity=-0.031 Sum_probs=247.2
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHc-----C---CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-------
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKV-----G---FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE------- 137 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 137 (454)
....|+.+...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 5678999999999999999999999987652 1 122346788999999999999999999887642
Q ss_pred ---C-CchhHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CcchHHHHHHH---HHhcCChHHHHHHHHHHHHccCCCC
Q 012879 138 ---R-NLVTWNVMITGLVKW--GELEFARSLFEEMPC--R-NVVSWTGIIDG---YTRMNRSNEALALFRKMVACEYTEP 205 (454)
Q Consensus 138 ---~-~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (454)
+ ...++.....++.+. +++++|++.|++..+ | ++..+..+..+ +...++.++|++.+++..+. .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1 234555555555544 579999999998764 4 34455555444 44568889999999998874 344
Q ss_pred ChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHH
Q 012879 206 SEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWT 280 (454)
Q Consensus 206 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 280 (454)
+..++..+...+.. .++.+.|.+.+++.... .|.+..++..+...|...|++++|...|++..+..| +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 56666666555544 46778999999998887 466888999999999999999999999999988877 555666
Q ss_pred HHHHHHHhc-------------------CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 281 SIISGFAMH-------------------GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 281 ~l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
.+..+|... +..+.|...+++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 666555322 23567777777776643 234456777888899999999999999998864
Q ss_pred CCCCCh--hHHHHHHH-HHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 342 EVLPDI--KHYGCLID-MLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 342 ~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
...+.. ..+..+.. .+...|+.++|++.|++.....|+...... ....+..++++.++.+|.++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 322221 12223322 234678999999999887766555433222 234456778888888999999999
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcCC
Q 012879 419 LMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 454 (454)
.++.++...|++++|.+.+++..+.+.....+.+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999888777788775
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=4.5e-18 Score=161.16 Aligned_cols=351 Identities=11% Similarity=-0.046 Sum_probs=297.1
Q ss_pred ChhhHHHHHHHHhc----cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHh----CCChhHHHHHHhhCCC-CCchhH
Q 012879 73 DSFTYSFLIRTCAT----LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDEMPE-RNLVTW 143 (454)
Q Consensus 73 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~ 143 (454)
+..++..+...+.. .+++++|...|+...+.| ++..+..|...|.. .+++++|...|++..+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 67788888888887 899999999999998875 56678888899988 8999999999998875 456678
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCChhhHHhHH
Q 012879 144 NVMITGLVK----WGELEFARSLFEEMPC-RNVVSWTGIIDGYTR----MNRSNEALALFRKMVACEYTEPSEITILAVL 214 (454)
Q Consensus 144 ~~ll~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 214 (454)
..+...|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+. .+...+..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHH
Confidence 888888888 8899999999998765 456778888888887 78999999999999885 3677888888
Q ss_pred HHHHc----cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHH
Q 012879 215 PAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGF 286 (454)
Q Consensus 215 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 286 (454)
..+.. .++.++|...+++..+.| ++..+..+...|.. .+++++|..+|++..+. .+...+..+...|
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y 265 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 88887 899999999999999875 56778888888886 88999999999998874 4666777788888
Q ss_pred Hh----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 287 AM----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG-----GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 287 ~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.. .++.++|...|++..+.| +...+..+...+... +++++|..+|+...+. + +...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHH
Confidence 77 899999999999998775 445666677777766 8999999999999875 3 456777788888
Q ss_pred HhcC---ChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh----
Q 012879 358 GRAG---RLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG---- 426 (454)
Q Consensus 358 ~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 426 (454)
...| ++++|.++|++..+. .+...+..+...|.. .+++++|++.++++.+.+ ++..+..++.+|.+
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 8766 889999999988766 577888889999988 899999999999999864 57788899999998
Q ss_pred cCCcCcHHHHHHHHhhccc
Q 012879 427 VGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~ 445 (454)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988773
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=3.1e-20 Score=166.19 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=133.0
Q ss_pred cccCCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHH
Q 012879 4 LQNSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRT 83 (454)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 83 (454)
|....++.+.+..+++.+ +++.+|..+..++.+.|++++|++.|.+. + |..+|..++.+
T Consensus 12 ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----------~---D~~~y~~V~~~ 70 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------D---DPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----------C---CHHHHHHHHHH
Confidence 344556666777777666 33469999999999999999999999765 3 77799999999
Q ss_pred HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 84 CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
+...|++++|..+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|
T Consensus 71 ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ----------------------------------------CHHHHTTTTT---CC----------------CTTTHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988877764 4567889999999999999999888875 477789999999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH
Q 012879 164 EEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243 (454)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (454)
..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.. .+
T Consensus 146 ~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~------~a 207 (449)
T 1b89_A 146 NNV-----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HA 207 (449)
T ss_dssp HHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT------CH
T ss_pred HHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh------CH
Confidence 988 48999999999999999999999988 2688999999999999999999766655331 34
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC------cHHHH
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMH--GMGKEAVENFGRMQKVGLKP------NRVTF 314 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~ 314 (454)
.....++..|.+.|.+++|..+++......+ ....|+-+.-+|++- ++..+.++.|.. +-+++| +...|
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 4455789999999999999999999887644 667888887777764 344444444432 122333 34567
Q ss_pred HHHHHHHhcCCChHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~ 333 (454)
..+...|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 7788888888888887653
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.5e-19 Score=161.76 Aligned_cols=352 Identities=10% Similarity=0.015 Sum_probs=172.4
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhC
Q 012879 43 LAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 122 (454)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (454)
+.|++++|.++++++. +..+|..++.++.+.|++++|.+.|.+ .+|..+|..++..+...
T Consensus 15 ~~~~ld~A~~fae~~~--------------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--------------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC
Confidence 5688999999999995 445899999999999999999999964 35778999999999999
Q ss_pred CChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 123 GFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 123 g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
|++++|+.+++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 75 g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 75 GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 999999998887765 566789999999999999999998885 478889999999999999999999999977
Q ss_pred cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHH
Q 012879 201 EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWT 280 (454)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (454)
..|..++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-..
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~ 211 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELE 211 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhhHH
Confidence 36899999999999999999999988 178899999999999999999977766644 2333345
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC------ChhHHHHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP------DIKHYGCLI 354 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~ 354 (454)
.++..|.+.|.+++|..+++...... +-....|+.+..++++- ++++..+.++.....-+++| +...|..++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 68899999999999999999987654 44566777777777664 45555555555544435554 467889999
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-------------CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 355 DMLGRAGRLEQAEKTALGIPSE-------------ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
-.|..-++++.|....-+-... ..+...|-..+.-|. +....++.-+...+. | .--....+
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~--~--~ld~~r~v 363 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS--P--RLDHTRAV 363 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG--G--GCCHHHHH
T ss_pred HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH--h--ccCcHHHH
Confidence 9999999999998766554322 334445555555554 222223333332221 1 11224556
Q ss_pred HHHHhcCCcCcHHHHHHHHhhccc
Q 012879 422 NILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..+.+.|...-+...+..+...+.
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred HHHHHcCCcHHHHHHHHHHHHhhH
Confidence 666677777777776666665543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=1.2e-19 Score=162.51 Aligned_cols=266 Identities=11% Similarity=-0.056 Sum_probs=221.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|+++.|...++++.+. .|.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHH
Confidence 3456777888889999999999999998874 3556778888888999999999999999999887 45578889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNL-VSWTSI--------------IS-GFAMHGMGKEAVENFGRMQKVGLKPNRVT 313 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 313 (454)
..++...|++++|.+.|+++....|+. ..+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 999999999999999999988875533 333333 22 3677889999999999998864 336788
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHc
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSF 392 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~ 392 (454)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++.... .+..++..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 888999999999999999999999875 23457788999999999999999999999887663 457889999999999
Q ss_pred CCChhHHHHHHHHHHHhhcC------------CCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 393 HGNVEMGERVTRKILEMERG------------YGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.|++++|.+.++++++..|. +...+..++.++.+.|++++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999998 567888999999999999999999876544
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.3e-18 Score=152.35 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=194.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 149 GLVKWGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456777777777766554322 2334566777777777777765533 23456667777777777777777
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.|.+.++++...+..|.++..+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777776654565777777888888888888888888887 35777888888888888888888888888887
Q ss_pred CCCCCcHHHH---HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cH
Q 012879 305 VGLKPNRVTF---LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DV 380 (454)
Q Consensus 305 ~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 380 (454)
.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++....| +.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 63 432211 22334445668899999999999875 456778888888999999999999999998777634 67
Q ss_pred hHHHHHHHHHHcCCChhH-HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHH
Q 012879 381 VVWRTLLGACSFHGNVEM-GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (454)
.++..++..+...|+.++ +.++++++++..|.++. +.....+.+.++++..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHH
Confidence 788888988888998875 57899999999888763 3344455555555443
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.1e-19 Score=165.62 Aligned_cols=283 Identities=14% Similarity=0.064 Sum_probs=211.5
Q ss_pred cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHHHccCCCC--ChhhHHhHHHHHHccCchhHHHHH
Q 012879 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA-LFRKMVACEYTEP--SEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
.+.++.+...|+.+...+.. ++...|++++|+. .|++........| +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555556655543322 3445689999998 8887665312222 356788999999999999999999
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 230 HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
++++.+. .|.+..++..+..++...|++++|...|+++....| +..++..+...+...|++++|...++++.+....
T Consensus 87 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 87 FEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999987 566889999999999999999999999999988866 7788999999999999999999999999986432
Q ss_pred CcHHHHHH---------------HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 309 PNRVTFLS---------------VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 309 p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
. ...+.. .+..+...|++++|...++.+.+.....++..++..+...|.+.|++++|...++++
T Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 Y-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp T-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 222211 233334889999999999999986322225788999999999999999999999998
Q ss_pred CCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 374 PSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 374 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
....| +..++..+...+...|++++|+..++++++..|.+...+..++.++.+.|++++|.+.+++..+...
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77634 5789999999999999999999999999999999999999999999999999999999999887543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=3.5e-17 Score=156.65 Aligned_cols=387 Identities=8% Similarity=0.010 Sum_probs=289.0
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHH-hc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTC-AT 86 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~-~~ 86 (454)
.++.+.++.+++...+..| .+...|..++..+.+.|++++|..+|+++. ... | +...|...+... ..
T Consensus 25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral---~~~----p---~~~lw~~~~~~~~~~ 92 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCL---MKV----L---HIDLWKCYLSYVRET 92 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TTC----C---CHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcC----C---ChHHHHHHHHHHHHH
Confidence 5678889999999998876 788899999999999999999999999997 332 5 666777777533 45
Q ss_pred cCCcchHhH----HHHHHHHc-CCCC-CchhHHHHHHHHHh---------CCChhHHHHHHhhCCC-CCc---hhHHHHH
Q 012879 87 LSHPNLGTQ----LHAVISKV-GFQS-HVYVNTALVNMYVS---------LGFLKDSSKLFDEMPE-RNL---VTWNVMI 147 (454)
Q Consensus 87 ~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~~~ll 147 (454)
.|+++.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.. ..|....
T Consensus 93 ~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~ 172 (530)
T 2ooe_A 93 KGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYN 172 (530)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHH
Confidence 678887766 77766653 5444 45678877777655 6899999999999875 332 2333222
Q ss_pred HHH-------------HhcCCHHHHHHHHhh-------CC------CCC--------cchHHHHHHHHHhc----CCh--
Q 012879 148 TGL-------------VKWGELEFARSLFEE-------MP------CRN--------VVSWTGIIDGYTRM----NRS-- 187 (454)
Q Consensus 148 ~~~-------------~~~~~~~~A~~~~~~-------~~------~~~--------~~~~~~l~~~~~~~----~~~-- 187 (454)
... .+.++++.|..++.. +. .|+ ...|...+...... ++.
T Consensus 173 ~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~ 252 (530)
T 2ooe_A 173 KYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252 (530)
T ss_dssp HHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHH
T ss_pred HHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchh
Confidence 211 134567777766654 21 122 13444444333222 233
Q ss_pred --HHHHHHHHHHHHccCCCCChhhHHhHHHHHHc-------cCchh-------HHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 188 --NEALALFRKMVACEYTEPSEITILAVLPAIWQ-------NGDVK-------SCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 188 --~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+|++.... .+.+...|...+..+.+ .|+++ .|..++++..+. ..|.+...+..++.
T Consensus 253 ~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 253 ITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence 4788899999884 45667888888888775 79987 899999999873 25668999999999
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH-HHhcCCChH
Q 012879 252 TYAKCGCIFSASKLFEDISVERKN-L-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN-ACSHGGLVE 328 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~ 328 (454)
.+.+.|++++|..+|+++.+..|+ . ..|...+..+.+.|++++|.++|++..+... .+...+..... .+...|+.+
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChh
Confidence 999999999999999999998774 3 4788889989999999999999999988632 22333332222 233589999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---Cc--HhHHHHHHHHHHcCCChhHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI---TD--VVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
+|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++..... |+ ...|...+......|+.+.+..+.
T Consensus 409 ~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998752 3457888999999999999999999999987652 22 347888888888999999999999
Q ss_pred HHHHHhhcC
Q 012879 404 RKILEMERG 412 (454)
Q Consensus 404 ~~~~~~~~~ 412 (454)
+++.+.-|.
T Consensus 487 ~r~~~~~p~ 495 (530)
T 2ooe_A 487 KRRFTAFRE 495 (530)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHCch
Confidence 999998885
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-18 Score=164.39 Aligned_cols=375 Identities=9% Similarity=-0.041 Sum_probs=248.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcC--CCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcC--
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTH--SHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVG-- 104 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 104 (454)
+....||.+...+...|++++|++.|++..++.+. +...-| ....+|+.+..++...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~--~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEI--RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTT--TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 44668999999999999999999999988754221 111002 056789999999999999999999999887631
Q ss_pred ----CCC-CchhHHHHHHHHHh--CCChhHHHHHHhhCCC--CC-chhHHHHHHH---HHhcCCHHHHHHHHhhCCC---
Q 012879 105 ----FQS-HVYVNTALVNMYVS--LGFLKDSSKLFDEMPE--RN-LVTWNVMITG---LVKWGELEFARSLFEEMPC--- 168 (454)
Q Consensus 105 ----~~~-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~--- 168 (454)
..+ ...++..+..++.. .+++++|+..|++..+ |+ +..+..+..+ +...++.++|++.+++..+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 111 23456655555554 4579999999999874 54 3344444444 3456777888888876543
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 169 RNVVSWTGIIDGYTR----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
.+..++..+...+.. .|++++|.+.+++... ..+.+..++..+...+...|+++.|...++++.+. .|.+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 344556555555544 4678899999999887 34566788999999999999999999999999987 566788
Q ss_pred HHHHHHHHHHhc-------------------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 245 VLNCLIDTYAKC-------------------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 245 ~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
++..+..+|... +.++.|...|++.....| +..++..+...+...|++++|+..|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 888887776532 235778888888877666 567889999999999999999999999988
Q ss_pred CCCCCcHH--HHHHHHH-HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH
Q 012879 305 VGLKPNRV--TFLSVLN-ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV 380 (454)
Q Consensus 305 ~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 380 (454)
....|... .+..+.. .....|+.++|+..|++..+. .|+........ ..+.++++..... +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHHHHhCCCCH
Confidence 65444322 2222222 345789999999999998864 45543322222 2333444443333 3467
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
.+|..+...|...|++++|++.|+++++.++.++.+...++
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 89999999999999999999999999999998877665544
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.7e-19 Score=164.31 Aligned_cols=260 Identities=12% Similarity=0.020 Sum_probs=198.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (454)
+...+..+...+.+.|++++|.++|+++.+ .+..++..+..++...|++++|+..|+++.+. .+.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 445677778888888888888888887753 35677888888888888888888888888874 3455778888888
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHH----------HHHHHHHHHHhcCChhHHHHHHHHhhhcCC---ChhhHHHH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIR----------VLNCLIDTYAKCGCIFSASKLFEDISVERK---NLVSWTSI 282 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l 282 (454)
.+...|++++|...++++.+. .|.+.. .+..+...+...|++++|.+.|+++....| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 888888888888888888875 232222 233457888888999999999999888765 46788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+..++..+..+|.+.|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 888999999999999999888763 336778888888899999999999999998875 23347788888899999999
Q ss_pred hHHHHHHHhcCCCCCC-------------cHhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 363 LEQAEKTALGIPSEIT-------------DVVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
+++|.+.|+++....| +..+|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998888765522 256788899999999999888777665
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.8e-18 Score=151.53 Aligned_cols=251 Identities=8% Similarity=0.032 Sum_probs=208.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCCh--hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSE--ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
++-....|+++.|+..+++... ..|+. .....+.+++...|+++.|...++.. .|++..++..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcC
Confidence 4556678999999999987653 23443 35567789999999999999866541 45588899999999999
Q ss_pred cCChhHHHHHHHHhhhc--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHH
Q 012879 256 CGCIFSASKLFEDISVE--RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 332 (454)
.|+.++|++.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998765 36 566777788999999999999999987 4577888899999999999999999
Q ss_pred HHHHHHHhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 333 FFDKMVEECEVLPDIKHY---GCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
.++.+.+. .|+.... ..++..+...|++++|..+|+++... +.+...++.+..++.+.|++++|++.++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999876 3553211 22334455569999999999998877 55788999999999999999999999999999
Q ss_pred hhcCCCCcHHHHHHHHHhcCCcCc-HHHHHHHHhhccc
Q 012879 409 MERGYGGDYVLMYNILAGVGRFGD-AERLRRVMDERNA 445 (454)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 445 (454)
..|.++.++..++.++...|+.++ +.++++++.+.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999976 5788888877654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.8e-18 Score=154.83 Aligned_cols=278 Identities=9% Similarity=-0.106 Sum_probs=201.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.+...|..+...+...|++++|+.+|+++. ...+. +..++..+..++...|++++|...++.+.+.. +.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 88 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVC---QAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKD 88 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCC
Confidence 456677788888999999999999999988 55554 77888889999999999999999999998875 456
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH-HH-HHHh
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGI-ID-GYTR 183 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~ 183 (454)
..++..+..++...|++++|...++++.+ |+ ...+..+...+ ++......+ .. .+..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHH
Confidence 77888888888899999999888887653 21 11222210000 111111122 12 3666
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+. .|.+...+..+..++...|++++|.
T Consensus 151 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77788888888887763 3446677777888888888888888888888776 3546778888888888888888888
Q ss_pred HHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----------cHHHHHHHHHHHhcCCChHHHH
Q 012879 264 KLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-----------NRVTFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~ 331 (454)
..|+++.+..| +..++..+...+...|++++|.+.++++.+..... +...+..+..++...|++++|.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 88888777655 56777888888888888888888888877643221 4667777888888888888888
Q ss_pred HHHHHHH
Q 012879 332 NFFDKMV 338 (454)
Q Consensus 332 ~~~~~~~ 338 (454)
.+++...
T Consensus 307 ~~~~~~l 313 (327)
T 3cv0_A 307 LTYAQNV 313 (327)
T ss_dssp HHTTCCS
T ss_pred HHHHHHH
Confidence 8776543
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=6.1e-16 Score=154.35 Aligned_cols=345 Identities=13% Similarity=0.094 Sum_probs=267.4
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-|+.-....+++|...|.+.+|+++++++. ..+. +-+-+...-+.++.+..+. +..+..++.+.....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv---l~~s---~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV---LDNS---VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH---cCCC---cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----
Confidence 445555778889999999999999999997 3332 1111445556677666666 566666666655422
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChH
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
...-+...+...|.+++|..+|++.... ....+.+ +-..+++++|.++.++.. ++.+|..+..++...|+++
T Consensus 1051 --d~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1051 --DAPDIANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred --cHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 1344778888999999999999997521 1112222 227889999999998774 4678889999999999999
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+|++.|.+. .|...|..++.++.+.|+++++.+++....+.. + ++.+.+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH--
Confidence 999999654 567788889999999999999999999888753 2 4445556999999999988644443
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChh
Q 012879 269 ISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIK 348 (454)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 348 (454)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..
T Consensus 1191 ---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~ 1251 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTR 1251 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHH
Confidence 1367777888899999999999999999884 47889999999999999999998876 2557
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
+|..+..+|...|++..|......+.. ++..+..++..|.+.|.+++|+.+++..+..++.+...|..++.++.+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 888888999999999999988776433 5666778899999999999999999999988877877887777777664
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=7e-16 Score=153.90 Aligned_cols=371 Identities=10% Similarity=0.061 Sum_probs=286.9
Q ss_pred CCCCchhHHHHHHHHhhhh-hhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 8 QTPNNITTQIHSHLLTTNS-LLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
.+.+..+..+++.+...++ |..+....+.++.+..+. +..+..+..+... . . + ..-+...+..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---~------~---d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---N------Y---D---APDIANIAIS 1061 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---h------c---c---HHHHHHHHHh
Confidence 4566777777777775443 345667777788877777 5566666666653 1 1 2 3457788889
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEM 166 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 166 (454)
.|.+++|..+|++.. ......+.++ -..|++++|.++.+++ .+..+|..+..++.+.|++++|++.|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 999999999999852 1112223232 2788999999999977 44678999999999999999999999775
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH
Q 012879 167 PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL 246 (454)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (454)
.|...|..++.++.+.|++++|++.|...++. . +++...+.++.+|++.++++....+. + .+ +...+
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rleele~fI----~---~~-n~ad~ 1198 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLAELEEFI----N---GP-NNAHI 1198 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC-CHHHH
Confidence 67788899999999999999999999988875 2 44444445899999999988655443 2 22 55667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 326 (454)
..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|+
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence 78999999999999999999986 36999999999999999999999876 356899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHc--CCChhHHHHHH
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSF--HGNVEMGERVT 403 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~--~g~~~~A~~~~ 403 (454)
+..|......+ ..++..+..++..|.+.|.+++|+.+++...... -....|.-+...|++ -++..++.+.|
T Consensus 1266 f~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998766543 2356677899999999999999999999988763 344567667776665 45667777777
Q ss_pred HHHHHhhc-----CCCCcHHHHHHHHHhcCCcCcHHHH
Q 012879 404 RKILEMER-----GYGGDYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 404 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (454)
..-....+ .....|..+...|.+.|+++.|...
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 76655444 3566799999999999999999843
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.6e-17 Score=138.91 Aligned_cols=224 Identities=8% Similarity=-0.013 Sum_probs=179.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch-------HH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-------IR 244 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 244 (454)
..+..+...+...|++++|+..|+++.+. . .+..++..+..++...|++++|...++.+.+.. |.+ ..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchHHHHH
Confidence 46777888888999999999999998886 4 778888888889999999999999888887752 212 57
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
++..+..+|...|++++|...|+++....|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888899999999999999999988876663 34566678888999988888753 22455677778888888
Q ss_pred CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHH
Q 012879 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
|++++|...++.+.+. .+.+..++..+..+|...|++++|.+.++++....| +..++..+...+...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999988875 234567788888888888888888888888766533 4677888888888888999999888
Q ss_pred HHHHHhh
Q 012879 404 RKILEME 410 (454)
Q Consensus 404 ~~~~~~~ 410 (454)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888887
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=166.48 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
...+|++||++|++.|++++|.++|++|.+. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 5678999999999999999999999887643 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCcHhHHHHHHHHHHc
Q 012879 317 VLNACSHGGLV-EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITDVVVWRTLLGACSF 392 (454)
Q Consensus 317 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~ 392 (454)
+|.++|+.|+. ++|.++|++|.+. |+.||..+|++++....+.+-++.+.++...+... .|...+...|.+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999985 7899999999999 99999999999998777654444443333333222 1224455566677776
Q ss_pred CCC---------hhHHHHHHHHHHHh
Q 012879 393 HGN---------VEMGERVTRKILEM 409 (454)
Q Consensus 393 ~g~---------~~~A~~~~~~~~~~ 409 (454)
.+. .++-.+.|++=++.
T Consensus 285 d~~~s~pk~~~~~~~L~~~~~~Ql~~ 310 (1134)
T 3spa_A 285 DGRVSYPKLHLPLKTLQCLFEKQLHM 310 (1134)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCcCccccCCHHHHHHHHHHHHHH
Confidence 552 35555666655543
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=3.4e-16 Score=136.06 Aligned_cols=252 Identities=11% Similarity=-0.090 Sum_probs=170.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc-hHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF-DIRVLNCLI 250 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 250 (454)
..+......+...|++++|+..|++..+. .+.+...+..+..++...|++++|...++.+.+.+..+. ....+..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34555666777777777777777777763 334455677777777777777777777777776431111 134477777
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
.++...|++++|++.|++.....| +..++..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887777655 55677777788888888888888887777652 2345555555523333458888
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCCC---CCc------HhHHHHHHHHHHcCCChh
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR---LEQAEKTALGIPSE---ITD------VVVWRTLLGACSFHGNVE 397 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~l~~~~~~~g~~~ 397 (454)
|.+.|+.+.+. .+.+...+..+..++...|+ +++|...++++... .|+ ..+|..+...|...|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 88888888764 22335666667777777776 66677766665544 233 257778888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 398 MGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+|.+.++++++..|.++.++..+.......+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999998877777666554443
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.3e-16 Score=138.84 Aligned_cols=246 Identities=9% Similarity=-0.080 Sum_probs=194.3
Q ss_pred HhcCChHHHHHHHHHHHHccCC--CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 182 TRMNRSNEALALFRKMVACEYT--EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
...|++++|+..|+++.+.... +.+..++..+...+...|++++|...++++.+. .|.+..++..+..+|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence 3457889999999998875111 124567888888999999999999999999887 455788999999999999999
Q ss_pred hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 260 FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
++|.+.|+++....| +..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999988766 67789999999999999999999999998853 443344444455567799999999998887
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 339 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
.. .+++...+ .++..+...++.++|.+.+++.....|+ ..++..+...|...|++++|...++++++..|.+
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 75 23344443 4777788888999999999998887332 5788899999999999999999999999987765
Q ss_pred CCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 414 GGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
. .....++...|++++|.+.+
T Consensus 249 ~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C---HHHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHHhhHHHH
Confidence 4 34467788889999988776
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-16 Score=137.81 Aligned_cols=224 Identities=11% Similarity=-0.032 Sum_probs=196.7
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC--------hhh
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN--------LVS 278 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~ 278 (454)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|.+.|+++....|+ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4567888899999999999999999999986 37889999999999999999999999998876442 578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 012879 279 WTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358 (454)
Q Consensus 279 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (454)
+..+...+...|++++|...+++..+. .|+. ..+...|++++|...++.+... .+.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH
Confidence 889999999999999999999999885 3443 3455668899999999999873 2335677888999999
Q ss_pred hcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 359 RAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
..|++++|.+.++++... +.+..++..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|.+.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999998776 3467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 012879 438 RVMDERN 444 (454)
Q Consensus 438 ~~~~~~~ 444 (454)
++..+.+
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9988765
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=6.9e-17 Score=135.22 Aligned_cols=210 Identities=13% Similarity=0.005 Sum_probs=110.7
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSI 282 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 282 (454)
|++...+..+...+...|++++|...+++..+. .|.++..+..+..++.+.|++++|+..|++..+..| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 344455555555555555555555555555554 344555555555555555555555555555555444 33444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
...+...+. . .+. .....|++++|...+++..+. -+.+...+..+..+|...|+
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence 444444300 0 000 000116666666666666653 12235556666666666777
Q ss_pred hHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 363 LEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+++|+..|++......+...+..+..+|...|++++|+..++++++..|.++..+..++.++.+.|++++|.+.+++..
T Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 134 RDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777666665543323556666777777777777777777777777777777777777777777777777777776653
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.4e-15 Score=127.29 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=143.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHH
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 248 (454)
++...+..+...+...|++++|+..|++..+ ..+.+...+..+...+...|++++|...+++..+. .|.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 3556777788888888888888888888887 34556778888888888888888888888888887 4667888888
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 249 LIDTYAKC-----------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 249 l~~~~~~~-----------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
+..++... |++++|+..|++..+..| +...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 88888888 888888888888877766 56677777788888888888888888887765 56777777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
+..++...|++++|...|+.+.+. .+.+...+..+..++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 778888888888888888888764 23345667777777777888888877776653
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=1.7e-15 Score=137.05 Aligned_cols=249 Identities=10% Similarity=0.004 Sum_probs=193.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc-hhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD-VKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
...|..+...+...|++++|+..|+++++. .+-+...|..+..++...|+ +++|...++++.+. .|.+..+|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 346777777888888888888888888873 34556778888888888886 88888888888886 56688888888
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc-CCCh
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH-GGLV 327 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~ 327 (454)
..++...|++++|+..|+++....| +...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 8888888899999998888888766 6778888888888888889999998888876432 56777777777777 5554
Q ss_pred HHH-----HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCC-----
Q 012879 328 EEG-----LNFFDKMVEECEVLPDIKHYGCLIDMLGRAG--RLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHG----- 394 (454)
Q Consensus 328 ~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g----- 394 (454)
++| +..+++..+. -+-+...|..+..++...| ++++|.+.+.++ .. ..+...+..++..|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 4778877764 2234667778888888877 688888888887 44 445677888888888764
Q ss_pred ---C-hhHHHHHHHHH-HHhhcCCCCcHHHHHHHHHhc
Q 012879 395 ---N-VEMGERVTRKI-LEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 395 ---~-~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 427 (454)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 888888888888877777543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=5.7e-15 Score=126.76 Aligned_cols=204 Identities=8% Similarity=-0.063 Sum_probs=133.5
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHH
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGF 286 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 286 (454)
..+..+...+...|++++|...++++.+. .|.+...+..+..+|...|++++|.+.|+++....| +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 34445555555555555555555555554 233556666666677777777777777776666544 555666666777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+.+. . +.+...+..+...|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766632233 4455666667777777777777777777664 2 2345666777777777777777
Q ss_pred HHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 366 AEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 366 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
|...++++... +.+...+..+...+...|++++|.+.++++.+..|.++.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 77777776655 335566677777777778888888888888777766543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9e-16 Score=143.21 Aligned_cols=378 Identities=10% Similarity=-0.005 Sum_probs=246.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCc---chHhHHHHHHHHcCCCCCchhH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHP---NLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
.+...+.+.|++++|++.|+... ..+. ..++..+...+...|++ ++|...|+...+. ++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa---~~g~--------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~ 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLA---ELGY--------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHTC--------CTGGGTCC--------------------------------CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH---HCCC--------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHH
Confidence 36677788999999999999987 4442 23445566666667777 8999999988754 55666
Q ss_pred HHHHHHHHhCC-----ChhHHHHHHhhCCCC-CchhHHHHHHHHHhcCCHHHHH---HHHhhCCC-CCcchHHHHHHHHH
Q 012879 113 TALVNMYVSLG-----FLKDSSKLFDEMPER-NLVTWNVMITGLVKWGELEFAR---SLFEEMPC-RNVVSWTGIIDGYT 182 (454)
Q Consensus 113 ~~l~~~~~~~g-----~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~---~~~~~~~~-~~~~~~~~l~~~~~ 182 (454)
..+...+...+ ++++|...|++..++ +...+..+...|...+..+.+. +.+....+ .++.....+...|.
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYR 152 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777555555 788999999887753 4557777888887766544333 33333222 45677788888888
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC---chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc---
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG---DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC--- 256 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 256 (454)
..+.++++........+. -...++..+..+...+...| +.++|...|++..+.| +++...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHTCGGGGHHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGS
T ss_pred cCCCcccCHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCC
Confidence 888666665554444332 22334448888888888899 8999999999999886 33666667777777665
Q ss_pred -CChhHHHHHHHHhhhcCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC-----Ch
Q 012879 257 -GCIFSASKLFEDISVERKNLVSWTSIISG-F--AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG-----LV 327 (454)
Q Consensus 257 -g~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~ 327 (454)
+++++|.+.|++.. ..++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 230 ~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp SCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 78999999999988 3567777777776 4 45789999999999998876 4556666666665 45 89
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHH
Q 012879 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMG 399 (454)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 399 (454)
++|..+|+... . -+...+..|...|.. ..++++|.++|++..+. .+......|...|.. ..|.++|
T Consensus 304 ~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99999998876 2 356677777777766 34899999999987765 345566677777764 4589999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
...++++.+.+..........+......++..+|.++.++..+.
T Consensus 378 ~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 378 YVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999998876543222222222222335666777777776554
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=7.1e-15 Score=127.67 Aligned_cols=233 Identities=9% Similarity=-0.026 Sum_probs=165.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc-
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV- 109 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 109 (454)
+..+......+.+.|++++|+..|+.+. ...+. +...+..+..++...|++++|...++.+.+.+..++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLE---AKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHH---HTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 3456667788889999999999999998 55554 6668888899999999999999999999884322222
Q ss_pred -hhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 012879 110 -YVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYT 182 (454)
Q Consensus 110 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 182 (454)
..|..+..++...|++++|...|++..+ .+..++..+...+...|++++|.+.|++..+ .+...+..+...+.
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 2378888899999999999999988764 3456788888888888888888888888765 23455666662444
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc---hhHHHHHHHhhhhcCCCCch------HHHHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD---VKSCQLIHGYGEKRGFTAFD------IRVLNCLIDTY 253 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~ 253 (454)
..+++++|...|+++.+. .+.+...+..+...+...|+ .+.|...++++.+.....++ ..++..+...|
T Consensus 154 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 445888888888888773 33445666666677766666 66677776666654211112 24566667777
Q ss_pred HhcCChhHHHHHHHHhhhcCC
Q 012879 254 AKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~ 274 (454)
...|++++|.+.|+++.+..|
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHhcCc
Confidence 777777777777777766655
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=2.9e-14 Score=123.97 Aligned_cols=226 Identities=11% Similarity=-0.050 Sum_probs=158.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 4456667777777888888888888877762 345666677777777 778888888887777764 5666
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 246 LNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGFAM----HGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 246 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
+..+...|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 7777777777 77788888777777664 366667777777777 777777777777777754 34455556
Q ss_pred HHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 012879 318 LNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGA 389 (454)
Q Consensus 318 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 389 (454)
...+.. .+++++|...|+...+. + +...+..+...|.. .+++++|.+.+++..+.. +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 666665 67777777777777664 2 34566666777777 777777777777665552 25566666677
Q ss_pred HHc----CCChhHHHHHHHHHHHhhcC
Q 012879 390 CSF----HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 390 ~~~----~g~~~~A~~~~~~~~~~~~~ 412 (454)
|.. .+++++|++.++++.+.+|.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 766 77777777777777776654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=6.9e-16 Score=131.65 Aligned_cols=213 Identities=11% Similarity=0.007 Sum_probs=130.3
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...+..+...+...|+++.|...++++.+. .|.+...+..+..++...|++++|.+.|+++....| +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 344555555555666666666666665553 344566666666677777777777777776666544 45566666677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766643 234556666667777777777777777777654 22345666777777777777777
Q ss_pred HHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 366 AEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 366 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
|.+.++++... +.+..++..+...|...|++++|.+.++++++..|.+...+..+....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 77777766554 234667777888888888888888888888888877766665554433
No 48
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=161.54 Aligned_cols=152 Identities=9% Similarity=-0.004 Sum_probs=126.6
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
--..+||++|++|++.|++++|.++|+.|.++...|.. | |..|||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~--P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL--L---TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT--C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC--C---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34468999999999999999999999998754456888 9 999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCCh-hHHHHHHhhCC----CCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHH
Q 012879 109 VYVNTALVNMYVSLGFL-KDSSKLFDEMP----ERNLVTWNVMITGLVKWGELEFARSLFEEMPC-----RNVVSWTGII 178 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 178 (454)
..|||++|.++++.|+. ++|.++|++|. .||..+|+.++.+..+.+-++.+.++...+.. +.+.+...|.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 99999999999999985 78999999997 49999999999888776555555555444432 1234555566
Q ss_pred HHHHhcC
Q 012879 179 DGYTRMN 185 (454)
Q Consensus 179 ~~~~~~~ 185 (454)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6676655
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.5e-15 Score=140.55 Aligned_cols=265 Identities=12% Similarity=0.008 Sum_probs=152.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCCh----hhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSE----ITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLN 247 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 247 (454)
.+...+...|++++|+..|+++.+. . +.+. ..+..+...+...|+++.|...++++.+. +..+....++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA-G-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-c-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3444555556666666666655553 1 1121 24555555555666666666555554432 11222445566
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhc------CC-ChhhHHHHHHHHHhcCC-----------------hhHHHHHHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVE------RK-NLVSWTSIISGFAMHGM-----------------GKEAVENFGRMQ 303 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~ 303 (454)
.+...|...|++++|...|++.... .+ ...++..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666665543 11 22355556666666666 666666666544
Q ss_pred hC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 304 KV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 304 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 31 1111 1235555666666777777777777766553111111 2255666677777777777777776655
Q ss_pred CCCC-------cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC------CcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 375 SEIT-------DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 375 ~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
...+ ...++..+...+...|++++|.+.++++++..+... ..+..++.++.+.|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4311 135566677777777777777777777776654422 256667777777777777777777665
Q ss_pred h
Q 012879 442 E 442 (454)
Q Consensus 442 ~ 442 (454)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=5.1e-15 Score=124.51 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=109.3
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...+..+...+...|+++.|...++.+.+. .|.+...+..+..+|...|++++|.+.|+++....| +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 444555555566666666666666665554 233455555566666666666666666665555433 44455555555
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 286 FAMH-GMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 286 ~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+. .+.+...+..+..++.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 5566 66666666666555522222 2344555555555556666666666555543 122344555555555555555
Q ss_pred HHHHHHHhcCCCC-C-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 364 EQAEKTALGIPSE-I-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 364 ~~A~~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
++|.+.++++... + .+...+..+...+...|+.+.|..+++.+.+..|.++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 5555555554443 2 2344444445555555555555555555555555443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=1e-14 Score=122.66 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=140.2
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 318 (454)
|.++..+..+...+...|++++|.+.|+++....| +...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 44566677777777777777777777777766644 45667777777777777777777777776643 23556666677
Q ss_pred HHHhcC-CChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 319 NACSHG-GLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 319 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
..+... |++++|...++.+.+. +..|+ ...+..+..++...|++++|.+.++++....| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 777777 7777777777777662 23333 45666677777777777777777776655533 45667777777777777
Q ss_pred hhHHHHHHHHHHHhhc-CCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 396 VEMGERVTRKILEMER-GYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+++|.+.++++++..| .+...+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777777777777 666666666777777777777777777766543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=8.5e-14 Score=120.98 Aligned_cols=226 Identities=9% Similarity=-0.038 Sum_probs=184.8
Q ss_pred CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHH
Q 012879 205 PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWT 280 (454)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (454)
-+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.. +...+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHH
Confidence 355677788888888899999999999888832 56778888888888 899999999999887753 777888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 281 SIISGFAM----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 281 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
.+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHH
Confidence 88888888 899999999999988875 56777778888887 88999999999998875 3 5567777
Q ss_pred HHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 353 LIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 353 l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|++.++++.+.++ +..+..++.+|
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 8888887 88999999998887665 456777788888888 8999999999999888755 56777888888
Q ss_pred Hh----cCCcCcHHHHHHHHhhccc
Q 012879 425 AG----VGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 425 ~~----~g~~~~a~~~~~~~~~~~~ 445 (454)
.+ .|++++|.+.+++..+.+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88 8999999999988877654
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=7.2e-15 Score=137.11 Aligned_cols=342 Identities=12% Similarity=-0.023 Sum_probs=235.7
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh---hHHHHHHhhCCCCCchhHHHHHHHHHhcC-
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL---KDSSKLFDEMPERNLVTWNVMITGLVKWG- 154 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~- 154 (454)
.+...+.+.|++++|.++|+...+.| ++..+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788999999999999998877 344555667777778888 99999999988777777877877565555
Q ss_pred ----CHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCChHH---HHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 155 ----ELEFARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNE---ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 155 ----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
++++|...|++..+ .+...+..|...|...+..++ +.+.+...... .+......+...+...+.++.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcccC
Confidence 78999999988765 345688888888887765444 45555555443 2355667777777777755444
Q ss_pred ----HHHHHhhhhcCCCCchHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc----CChhH
Q 012879 227 ----QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG---CIFSASKLFEDISVERK-NLVSWTSIISGFAMH----GMGKE 294 (454)
Q Consensus 227 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~----g~~~~ 294 (454)
..+++..... ++..+..|...|...| +.++|++.|++..+..+ +...+..+...|... +++++
T Consensus 161 ~~~a~~~~~~a~~~-----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALNT-----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTTT-----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444444332 3348888999999999 99999999999988754 445556677777554 69999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHH-H--hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-----ChHHH
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNA-C--SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG-----RLEQA 366 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 366 (454)
|...|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999988 44 33444455544 3 4689999999999999876 4 5667777887777 55 99999
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh----cCCcCcHHHHHH
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG----VGRFGDAERLRR 438 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 438 (454)
.++|++.. ..++..+..|...|.. ..++++|...|+++.+. .++.....++.+|.. ..+.++|...++
T Consensus 307 ~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 307 EAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99999998 3577888888888776 44999999999999874 467788889998875 357888999998
Q ss_pred HHhhccc
Q 012879 439 VMDERNA 445 (454)
Q Consensus 439 ~~~~~~~ 445 (454)
+..+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 8877664
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=1.1e-15 Score=133.01 Aligned_cols=241 Identities=8% Similarity=-0.174 Sum_probs=171.1
Q ss_pred hcCCHHHHHHHHhhCCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 152 KWGELEFARSLFEEMPCR-------NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
..|++++|+..|+++.+. +..++..+...+...|++++|...|+++.+. .+.+..++..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 346677777777766541 3456777788888888888888888888773 3456778888888888888888
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+|...++++.+. .|.+..++..+..+|...|++++|...|+++....|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888886 454677888888888888888888888888887767555555555555667888888888877766
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
.. +++...+ .++..+...++.++|...++..... .|+ ...+..+..+|.+.|++++|...|+++....|+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 42 2333333 3566667777778888888776542 221 467778888888888999998888888776443
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHH
Q 012879 380 VVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233355666777888777765
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=4.4e-15 Score=136.94 Aligned_cols=299 Identities=15% Similarity=0.079 Sum_probs=199.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-----cchHHHHHHHHHhcCChHHHHHHHHHHHHcc---CCCC-Chh
Q 012879 140 LVTWNVMITGLVKWGELEFARSLFEEMPC--RN-----VVSWTGIIDGYTRMNRSNEALALFRKMVACE---YTEP-SEI 208 (454)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~ 208 (454)
...+......+...|++++|...|++..+ |+ ..++..+...+...|++++|...+++..... +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455666777888888888888877653 32 2467777788888888888888888765421 1111 244
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCC--------------------hhHHHH
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGC--------------------IFSASK 264 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~ 264 (454)
++..+...+...|+++.|...+++..+. +..+....++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6677777888888888888888877654 1111124467777888888888 888888
Q ss_pred HHHHhhhc---CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHH
Q 012879 265 LFEDISVE---RK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 265 ~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 332 (454)
.+++.... .+ ...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 87776543 11 2345677777888888888888888877642 1111 12366677777888888888888
Q ss_pred HHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc----HhHHHHHHHHHHcCCChhHHHH
Q 012879 333 FFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD----VVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 333 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
.+++..+...-.++ ..++..+...|...|++++|.+.+++.... .++ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877654111111 456667777888888888888888776544 111 4566777778888888888888
Q ss_pred HHHHHHHhhcCCCC------cHHHHHHHHHhcCCcCcHHHHHH
Q 012879 402 VTRKILEMERGYGG------DYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 402 ~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
.++++++..+.... ++..++.++...|+......-+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 88888887776743 45567777777777766554443
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=5.7e-15 Score=132.30 Aligned_cols=269 Identities=12% Similarity=0.008 Sum_probs=197.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRV 245 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 245 (454)
+......+...|++++|+..|+++.+. . +.+ ...+..+...+...|+++.|...+++..+. +..+....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344556777788888888888888774 1 222 356677777888888888888887776543 222334567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCC--------------------hhHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGM--------------------GKEAVEN 298 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 298 (454)
+..+...|...|++++|...+++.... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788888888999999999988887654 122 2367777888888888 8888888
Q ss_pred HHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHH
Q 012879 299 FGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 299 ~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
+++..+. +..| ...++..+...+...|++++|...++...+...-.++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776542 1111 2346777778888899999999999888754111111 33677888889999999999999
Q ss_pred HhcCCCC---CCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC------CcHHHHHHHHHhcCCcCcHHHH
Q 012879 370 ALGIPSE---ITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 370 ~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 436 (454)
+++.... .++ ..++..+...+...|++++|...++++++..+... ..+..++.++.+.|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877654 111 45778888999999999999999999988766532 3677899999999999999999
Q ss_pred HHHHhhcc
Q 012879 437 RRVMDERN 444 (454)
Q Consensus 437 ~~~~~~~~ 444 (454)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99887643
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=4.6e-13 Score=129.17 Aligned_cols=422 Identities=9% Similarity=-0.004 Sum_probs=285.2
Q ss_pred CchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC-
Q 012879 11 NNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH- 89 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~- 89 (454)
+......++.-....+ -|..+|..++..+.+.++++.+..+|+.+. ..-+. +...|...+..-.+.++
T Consensus 48 ~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL---~~fP~------~~~lW~~Yi~~E~~~~~~ 116 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLH---DRFPL------MANIWCMRLSLEFDKMEE 116 (679)
T ss_dssp CSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHTC--C
T ss_pred CHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHhhCCc
Confidence 3333434444455555 799999999999999999999999999998 55444 67788888888888888
Q ss_pred --cchHhHHHHHHHHcC-CCCCchhHHHHHHHHHhCCCh--------hHHHHHHhhCC------CC-CchhHHHHHHHHH
Q 012879 90 --PNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFL--------KDSSKLFDEMP------ER-NLVTWNVMITGLV 151 (454)
Q Consensus 90 --~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~ll~~~~ 151 (454)
++.+..+|+..+... .+|++..|...+....+.++. +...++|+... .+ +...|...+....
T Consensus 117 ~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 117 LDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp CCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 999999999998864 248888998888877666554 33446776533 23 3457877776543
Q ss_pred ---------hcCCHHHHHHHHhhCCC-CCc---chHH---HHHHHHH----------hcCChHHHHHHHHHHHHcc-CC-
Q 012879 152 ---------KWGELEFARSLFEEMPC-RNV---VSWT---GIIDGYT----------RMNRSNEALALFRKMVACE-YT- 203 (454)
Q Consensus 152 ---------~~~~~~~A~~~~~~~~~-~~~---~~~~---~l~~~~~----------~~~~~~~a~~~~~~~~~~~-~~- 203 (454)
..++++.+..+|++... |.. .+|. .+..... ...+++.|...+.++.... ++
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHh
Confidence 24467889999988775 321 2222 2211110 0112334444554432210 11
Q ss_pred ---C-----------C--C------hhhHHhHHHHHHccC-------chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 204 ---E-----------P--S------EITILAVLPAIWQNG-------DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 204 ---~-----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
+ | + ...|...+..--..+ ..+.+..+|++.... .|..+.+|...+..+.
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 1 1 0 022333333322222 123456678888876 5668888888888888
Q ss_pred hcCChhHHH-HHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------CCc------------H
Q 012879 255 KCGCIFSAS-KLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL---------KPN------------R 311 (454)
Q Consensus 255 ~~g~~~~a~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~ 311 (454)
..|+.++|. ++|++.....| +...|-..+...-+.|+++.|.++|+++.+... .|+ .
T Consensus 355 ~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 899999996 99999887766 555677778888889999999999998876310 131 2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHhcCCCCCC-cHhHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA-GRLEQAEKTALGIPSEIT-DVVVWRTLLGA 389 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 389 (454)
..|...+....+.|+.+.|.++|..+.+. .-.+....|...+..-.+. ++++.|.++|+...+..| +...|...++.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 35777777777788999999999999874 1112233444333333444 458999999998887733 55666777887
Q ss_pred HHcCCChhHHHHHHHHHHHhhcC---CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 390 CSFHGNVEMGERVTRKILEMERG---YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
....|+.+.|..+|+++++..++ ....|..++..-.+.|+.+.+..+.+++.+....
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 77889999999999999987773 4456778888888899999999999999876654
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=4.5e-15 Score=134.30 Aligned_cols=233 Identities=10% Similarity=0.051 Sum_probs=200.2
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC-hhHHHHHHHHhhhcCC-ChhhHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC-IFSASKLFEDISVERK-NLVSWTSIIS 284 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~-~~~~~~~l~~ 284 (454)
...|..+...+...|+++.|...++++.+. .|.+..+|+.+..++...|+ +++|+..|+++....| +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456777888889999999999999999997 57789999999999999997 9999999999999877 7789999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCCh
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR-AGRL 363 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 363 (454)
++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+. . +.+...|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998643 36788899999999999999999999999985 2 3357889999999999 6665
Q ss_pred HHH-----HHHHhcCCCCCC-cHhHHHHHHHHHHcCC--ChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC-------
Q 012879 364 EQA-----EKTALGIPSEIT-DVVVWRTLLGACSFHG--NVEMGERVTRKILEMERGYGGDYVLMYNILAGVG------- 428 (454)
Q Consensus 364 ~~A-----~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 428 (454)
++| ++.+++.....| +...|..+...+...| ++++|++.++++ +..|.++..+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 787 477887776644 5778999999999888 689999999998 778888888899999999875
Q ss_pred --CcCcHHHHHHHH-hhccc
Q 012879 429 --RFGDAERLRRVM-DERNA 445 (454)
Q Consensus 429 --~~~~a~~~~~~~-~~~~~ 445 (454)
..++|.++++++ .+.+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 258899999998 66544
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.3e-15 Score=128.32 Aligned_cols=202 Identities=9% Similarity=-0.007 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
.+..+..+...+...|++++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 556778888999999999999999999988766 67888899999999999999999999998864 3367788889999
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.++++... +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999885 2446778889999999999999999999988766 34678889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
+..++++++..|.+...+..++.++.+.|++++|.+.++++.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999999998889999999999999999999999999876543
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=3.3e-14 Score=121.98 Aligned_cols=198 Identities=11% Similarity=-0.018 Sum_probs=108.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++.+. .|.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 34445555555556666666666555542 2334455555555555566666666666555554 2334555555556
Q ss_pred HHHhcCChhHHHHHHHHhhh--cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH
Q 012879 252 TYAKCGCIFSASKLFEDISV--ERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (454)
+|...|++++|.+.|+++.. ..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666665555 323 33445555555566666666666666555532 123445555555566666666
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
+|...++.+.+. .+.+...+..+...+...|++++|.+.++++...
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666665542 2233445555555566666666666666555444
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=9.5e-15 Score=134.70 Aligned_cols=292 Identities=10% Similarity=-0.003 Sum_probs=219.2
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-----chhHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----C
Q 012879 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-----LVTWNVMITGLVKWGELEFARSLFEEMPC-----R----N 170 (454)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-----~----~ 170 (454)
.....+......+...|++++|...|++..+ |+ ..++..+...+...|++++|...+++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667788889999999999999998764 43 24677888899999999999999887542 1 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCc--------------------hhHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGD--------------------VKSC 226 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a 226 (454)
..++..+...+...|++++|...+++..+.....++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 356788888999999999999999988764111122 4478888889999999 9999
Q ss_pred HHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCChhHH
Q 012879 227 QLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 227 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A 295 (454)
...+++..+. +..+....++..+...|...|++++|...|++.... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998887653 222324567888999999999999999999988765 122 23778888999999999999
Q ss_pred HHHHHHHHhC----CCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 012879 296 VENFGRMQKV----GLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 296 ~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 366 (454)
...+++..+. +..+. ..++..+...+...|++++|...++...+...-.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987753 21111 456778888999999999999999998764211122 55777888999999999999
Q ss_pred HHHHhcCCCC---C----CcHhHHHHHHHHHHcCCChhH
Q 012879 367 EKTALGIPSE---I----TDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 367 ~~~~~~~~~~---~----p~~~~~~~l~~~~~~~g~~~~ 398 (454)
.+.+++.... . ....++..+...+...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9998876554 1 123456666666666666543
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=5.7e-15 Score=138.67 Aligned_cols=212 Identities=8% Similarity=-0.074 Sum_probs=169.8
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI-FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFG 300 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 300 (454)
++.+...++..... .|.+...+..+..+|...|++ ++|++.|++..+..| +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555554443 444777888888888888888 888888888877766 56778888888888888888888888
Q ss_pred HHHhCCCCCcHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CCh
Q 012879 301 RMQKVGLKPNRVTFLSVLNACSHG---------GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA--------GRL 363 (454)
Q Consensus 301 ~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 363 (454)
+..+. .|+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88875 45667777888888888 8889999999988875 233577788888888888 889
Q ss_pred HHHHHHHhcCCCCCC----cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 364 EQAEKTALGIPSEIT----DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
++|++.|++.....| +...|..+..+|...|++++|++.|+++++..|.+...+..++.++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988877544 6788999999999999999999999999999999888899999999999999988876544
Q ss_pred H
Q 012879 440 M 440 (454)
Q Consensus 440 ~ 440 (454)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.1e-14 Score=134.56 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=172.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCCh----hhHHHHHHHHhccCCcchHhHHHHHHHHcC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDS----FTYSFLIRTCATLSHPNLGTQLHAVISKVG 104 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 104 (454)
.....+..+...+...|++++|+..|+++. ...+. +. ..+..+...+...|++++|...+++..+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAI---QAGTE------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHH---Hhccc------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 445566677888999999999999999998 44433 33 578888899999999999999999887641
Q ss_pred -----CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHH
Q 012879 105 -----FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC--RNVVSWTGI 177 (454)
Q Consensus 105 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l 177 (454)
.+....++..+..+|...|++++|...+++..+ ++..... ....++..+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT------------------------LARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHHTCHHHHHHHHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------HHHHhhchHHHHHHHHHH
Confidence 123345777888888888998888888876532 1111110 011233444
Q ss_pred HHHHHhcCC-----------------hHHHHHHHHHHHHcc---CC-CCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 178 IDGYTRMNR-----------------SNEALALFRKMVACE---YT-EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 178 ~~~~~~~~~-----------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
...|...|+ +++|+..+++..+.. +. +....++..+...+...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 444444444 455554444433210 00 111234555555566666666666666555443
Q ss_pred C----CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 237 G----FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-------NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 237 ~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
. ........+..+..+|...|++++|...|++.....+ ...++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 0111123566677777777777777777776655421 1345666677777777777777777776542
Q ss_pred ----CCC-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 306 ----GLK-PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 306 ----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+.. ....++..+...+...|++++|...+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 11235666777777788888888888877764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=8e-13 Score=116.91 Aligned_cols=223 Identities=7% Similarity=-0.031 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHH-------ccCch-------hHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIW-------QNGDV-------KSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
++|...|++.... .+.+...|..++..+. ..|++ ++|..++++..+. ..|.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 6788899988873 4566777777777765 35775 8999999999883 1455778999999999
Q ss_pred HhcCChhHHHHHHHHhhhcCCC-hh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH-hcCCChHHH
Q 012879 254 AKCGCIFSASKLFEDISVERKN-LV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC-SHGGLVEEG 330 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a 330 (454)
.+.|++++|.++|+++.+..|+ .. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988774 44 788899999999999999999999988642 3444444333332 236999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CC--cHhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---IT--DVVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
..+|+...+. .+.+...|..++..+.+.|++++|..+|++.... .| ....|..++..+...|+.+.|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875 2346778888999999999999999999998774 34 356788889888999999999999999
Q ss_pred HHHhhcCCCCc
Q 012879 406 ILEMERGYGGD 416 (454)
Q Consensus 406 ~~~~~~~~~~~ 416 (454)
+.+..|.+...
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999985543
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=3.7e-14 Score=126.96 Aligned_cols=279 Identities=14% Similarity=0.058 Sum_probs=167.3
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC----hhhHHHHHHHHhccCCcchHhHHHHHHHHc-
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD----SFTYSFLIRTCATLSHPNLGTQLHAVISKV- 103 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 103 (454)
.+...+......+...|++++|+..|+++. ...+. + ...+..+...+...|++++|...+++..+.
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAV---QVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344566677788899999999999999998 44433 3 467888899999999999999999987653
Q ss_pred ---CCC-CCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----CC----chhHHHHHHHHHhcCC-------------HH
Q 012879 104 ---GFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-----RN----LVTWNVMITGLVKWGE-------------LE 157 (454)
Q Consensus 104 ---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~-------------~~ 157 (454)
+.. ....++..+...+...|++++|...+++..+ ++ ..++..+...+...|+ .+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 211 2245677788888888888888888776542 11 1244444444555555 00
Q ss_pred HHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc---C-CCCChhhHHhHHHHHHccCchhHHHHHHHhh
Q 012879 158 FARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE---Y-TEPSEITILAVLPAIWQNGDVKSCQLIHGYG 233 (454)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (454)
++.+. +++|...+++..... + .+....++..+...+...|+++.|...+++.
T Consensus 154 ~a~~~------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 154 DVRNA------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHH------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 00000 444444444332210 0 0111234445555555555555555555554
Q ss_pred hhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 012879 234 EKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENFGRM 302 (454)
Q Consensus 234 ~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 302 (454)
.+. +..+....++..+...+...|++++|...+++..... ++ ..++..+...+...|++++|...+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 432 1111123356666777777777777777777665431 11 345666667777777777777777766
Q ss_pred HhC----CCC-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 303 QKV----GLK-PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 303 ~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+. +.. ....++..+...+...|++++|...+++..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 542 111 11335566677777778888887777777653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=9.6e-14 Score=127.04 Aligned_cols=236 Identities=7% Similarity=-0.095 Sum_probs=159.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCchhHHHHHHHhhhhcC----C-CCchHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGDVKSCQLIHGYGEKRG----F-TAFDIRVLN 247 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ 247 (454)
....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+++..+.. . .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776653111122 2456666677777777777777776665531 1 122345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCcHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GL-KPNRVTFL 315 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 315 (454)
.+..+|...|++++|...|++..... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 78888888888888888888776541 22 136777888888888888888888887661 23 33455677
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcC---CCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECE---VLPDIKHYGCLIDMLGRAGR---LEQAEKTALGIPSEITDVVVWRTLLGA 389 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~ 389 (454)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++..........+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 788888888888888888888765411 11112334567777777888 788888888874432234567778888
Q ss_pred HHcCCChhHHHHHHHHHHHhhcC
Q 012879 390 CSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
|...|++++|.+.++++++....
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHHHHHHHHHH
Confidence 88888888888888888876544
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=4e-14 Score=129.56 Aligned_cols=230 Identities=7% Similarity=-0.036 Sum_probs=179.5
Q ss_pred HHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCC-----hhhHH
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKN-----LVSWT 280 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-----~~~~~ 280 (454)
....+...|++++|...++++.+. +..+....++..+..+|...|+++.|...+++.... .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778999999999999998774 222224578899999999999999999999988765 122 34688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc---CC-CCChhHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC---EV-LPDIKHYG 351 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 351 (454)
.+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999987753 1111 12477888899999999999999999988721 12 23366788
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-----CCc-HhHHHHHHHHHHcCCC---hhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE-----ITD-VVVWRTLLGACSFHGN---VEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
.+..+|.+.|++++|.+.+++.... .|. ...+..+...+...|+ +++|+.++++. ...+.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999987654 122 2335678888889999 78888888776 222334457778999
Q ss_pred HHHhcCCcCcHHHHHHHHhhc
Q 012879 423 ILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.|...|++++|.+.+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998774
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.9e-13 Score=111.04 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
++.+|..+..+|...|++++|++.|++..+..| +..++..+..+|.+.|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 566777777777777777777777777777655 566677777777777777777777777766532 244555566666
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++..+.. .+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 67777777777777777654 23345566666777777777777777777665552 3456677777777777777777
Q ss_pred HHHHHHHHHhhcCC
Q 012879 400 ERVTRKILEMERGY 413 (454)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (454)
++.|+++++.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 77777777766653
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=9.4e-14 Score=112.89 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=149.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
.++.+|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 467789999999999999999999999998864 336778889999999999999999999999875 33456777888
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCc
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (454)
...+...++++.|.+.+.+.... +.+...+..+...+...|++++|++.++++++..|.++.++..++.++.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999987766 34578889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 012879 433 AERLRRVMDERNA 445 (454)
Q Consensus 433 a~~~~~~~~~~~~ 445 (454)
|.+.+++..+.+.
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887653
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=9.7e-13 Score=116.38 Aligned_cols=217 Identities=9% Similarity=-0.039 Sum_probs=178.4
Q ss_pred hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHhhh-cCC-ChhhHHHHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK-------CGCI-------FSASKLFEDISV-ERK-NLVSWTSIISGFA 287 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~-~~~~~~~l~~~~~ 287 (454)
+.|...|+++... .|.++..|..++..+.. .|++ ++|..+|++... ..| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 6788899999886 56688899988888763 5886 999999999998 466 5668999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCc-HH-HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChH
Q 012879 288 MHGMGKEAVENFGRMQKVGLKPN-RV-TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG-RAGRLE 364 (454)
Q Consensus 288 ~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 364 (454)
+.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999985 443 33 7888888999999999999999999874 2334455544433322 379999
Q ss_pred HHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh---hcC-CCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 365 QAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM---ERG-YGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 365 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
+|.++|++.... +.+...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998776 346788999999999999999999999999995 443 556788899999999999999999999
Q ss_pred Hhhcccc
Q 012879 440 MDERNAF 446 (454)
Q Consensus 440 ~~~~~~~ 446 (454)
+.+....
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 8876553
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.56 E-value=1.8e-11 Score=118.10 Aligned_cols=391 Identities=8% Similarity=-0.006 Sum_probs=274.7
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCC---hHHHHHHHHHHHHHhcCCC-CCCCCCCChhhHHHHHHH
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAES---PQKAFLLYKQLQQIYTHSH-SPLPPLFDSFTYSFLIRT 83 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~ 83 (454)
.++.+.++.+|+...+..| .+...|...+..-.+.|+ ++.+..+|++.. ...+ . | ++..|..-+.-
T Consensus 79 ~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal---~~~~~~--~---sv~LW~~Yl~f 148 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCL---SKELGN--N---DLSLWLSYITY 148 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT---CSSSCC--C---CHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH---HhcCCC--C---CHHHHHHHHHH
Confidence 3456778888888888876 777889999999999999 999999999997 4432 2 4 77788887776
Q ss_pred HhccCCc--------chHhHHHHHHHH-cCC-CCC-chhHHHHHHHHHh---------CCChhHHHHHHhhCCC-CCc--
Q 012879 84 CATLSHP--------NLGTQLHAVISK-VGF-QSH-VYVNTALVNMYVS---------LGFLKDSSKLFDEMPE-RNL-- 140 (454)
Q Consensus 84 ~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~-- 140 (454)
..+.++. +...++|+..+. .|. .++ ...|...+..... .++++.+..+|++... |..
T Consensus 149 ~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~ 228 (679)
T 4e6h_A 149 VRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCL 228 (679)
T ss_dssp HHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHH
Confidence 5555543 334577777665 465 454 4678888776543 3457889999998875 321
Q ss_pred -hhHHH---HHHHH----------HhcCCHHHHHHHHhh-------CCC--CC--------------------cchHHHH
Q 012879 141 -VTWNV---MITGL----------VKWGELEFARSLFEE-------MPC--RN--------------------VVSWTGI 177 (454)
Q Consensus 141 -~~~~~---ll~~~----------~~~~~~~~A~~~~~~-------~~~--~~--------------------~~~~~~l 177 (454)
.+|.. +...+ -...+++.|...+.+ +.. |. ...|...
T Consensus 229 ~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y 308 (679)
T 4e6h_A 229 ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW 308 (679)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHH
Confidence 23322 21111 011233444444433 111 10 1234444
Q ss_pred HHHHHhcC-------ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHH-HHHHhhhhcCCCCchHHHHHHH
Q 012879 178 IDGYTRMN-------RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQ-LIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 178 ~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l 249 (454)
+..--..+ ..+.+..+|++++. ..+-....|...+..+...|+.+.|. .++++.... .|.+...+..+
T Consensus 309 i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~ 384 (679)
T 4e6h_A 309 IRWESDNKLELSDDLHKARMTYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSL 384 (679)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHhCCccccchhhHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44333222 13446678999988 45667888888888888999999996 999999875 56688888889
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-----------CCC------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVE-----------RKN------------LVSWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~-----------~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
+....+.|+++.|.++|+++... .|+ ..+|...+....+.|+.+.|..+|.+..+.-
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998763 132 2357777787788899999999999998761
Q ss_pred CCCcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC----cHh
Q 012879 307 LKPNRVTFLSVLNACSH-GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT----DVV 381 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~ 381 (454)
..++...|...+..-.+ .++.+.|.++|+...+. ++.+...+...++.....|+.+.|..+|++.....| ...
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~ 542 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKM 542 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 11123333333222223 35699999999999986 344566777888888889999999999999888744 346
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
.|...+..-.+.|+.+.+..+.+++.+..|.++
T Consensus 543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 543 IFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 788888888899999999999999999998765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.5e-14 Score=124.52 Aligned_cols=240 Identities=10% Similarity=0.018 Sum_probs=140.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcc------CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc------CCC
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACE------YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR------GFT 239 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 239 (454)
.++..+...+...|++++|..+++++.+.. ..+....++..+...+...|++++|...++++.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456666677777777777777777766520 11223455666667777777777777777776654 223
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC--------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----- 305 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 305 (454)
+....++..+...|...|++++|...|+++.... | ....+..+...+...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4456677778888888888888888887776541 2 2345667777778888888888888777653
Q ss_pred -CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc------CCCCCh-------hHHHHHHHHHHhcCChHHHHHHH
Q 012879 306 -GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC------EVLPDI-------KHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 306 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
+..| ...++..+...+...|++++|...++++.+.. ...+.. ..+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 2122 23456677777888888888888888777530 011111 11122222333344444555555
Q ss_pred hcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 371 LGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 371 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
.......| ...++..+..+|...|++++|.+.++++++..|
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55544422 345666677777777777777777777776654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=126.31 Aligned_cols=238 Identities=14% Similarity=0.025 Sum_probs=176.6
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcC------CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-------
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRG------FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE------- 272 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 272 (454)
+..++..+...+...|++++|..+++++.+.. ..+....++..+..+|...|++++|...|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35678888899999999999999999988731 13446778899999999999999999999988765
Q ss_pred -CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc--
Q 012879 273 -RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV------GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC-- 341 (454)
Q Consensus 273 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 341 (454)
.| ...++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|..+++.+.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12 3457888889999999999999999998764 2223 34567788899999999999999999987641
Q ss_pred ---C-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---------CC-------cHhHHHHHHHHHHcCCChhHHHH
Q 012879 342 ---E-VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---------IT-------DVVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 342 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p-------~~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
+ .+....++..+..+|...|++++|.+.++++... .+ ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1223557788899999999999999999887653 11 11233334445566778888889
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 402 VTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.+++.....|.....+..++.+|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999998888888888999999999999999999999988764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.52 E-value=1.6e-11 Score=111.83 Aligned_cols=261 Identities=12% Similarity=0.011 Sum_probs=126.3
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCCC-hh----hHHhHHHHHHccCchhHHHHHHHhhhhcC----CCCchHHHHHHHH
Q 012879 180 GYTRMNRSNEALALFRKMVACEYTEPS-EI----TILAVLPAIWQNGDVKSCQLIHGYGEKRG----FTAFDIRVLNCLI 250 (454)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~ 250 (454)
.+...|++++|...+++.... . +++ .. ++..+...+...|+++.|...+++..... ........+..+.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEE-L-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-C-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc-C-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444555555555555555543 1 111 11 23344445555556665555555544321 0000112344455
Q ss_pred HHHHhcCChhHHHHHHHHhhhcC--------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--cHHHHHHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK--P--NRVTFLSV 317 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~~~~~l 317 (454)
..+...|++++|.+.+++..... | ....+..+...+...|++++|...+++..+.... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 55666666666666666554430 1 1123444555556666666666666655442111 1 12344455
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHhcCCCCCCc-----HhHHHHHH
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG-----CLIDMLGRAGRLEQAEKTALGIPSEITD-----VVVWRTLL 387 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~ 387 (454)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++.....|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 5555666666666666666554311111101111 1223355666666666666665544111 12344555
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCC------CcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..+...|++++|...++++.+..+... ..+..++.++...|+.++|.+.+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566666666666666666655443311 2344455566666666666666655543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=4.9e-12 Score=115.42 Aligned_cols=234 Identities=12% Similarity=0.006 Sum_probs=157.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCchhHHHHHHHhhhhcCC-----CCchHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGDVKSCQLIHGYGEKRGF-----TAFDIRVLN 247 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 247 (454)
....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+++..+... .+....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 444566778888888888777653111222 34566677777777887777777777665311 111345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcHHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPNRVTFLS 316 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ 316 (454)
.+..+|...|++++|.+.|++.... .++ ..++..+...|...|++++|...+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7888888888888888888877654 122 235677778888888888888888887661 22233566777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRAGR---LEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ +.+|+..+++..........+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 788888888888888888888775222111 3344555566667777 7888888887544322334566788888
Q ss_pred HcCCChhHHHHHHHHHHHhh
Q 012879 391 SFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~ 410 (454)
...|++++|.+.++++++..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 88888888888888887653
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=4.5e-13 Score=125.75 Aligned_cols=196 Identities=13% Similarity=0.023 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHhcCCh-HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRS-NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
...+..+...+...|++ ++|+..|++..+. .+.+...+..+...+...|++++|...++++.+. .| +...+..+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p-~~~~~~~l 176 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CK-NKVSLQNL 176 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC-CHHHHHHH
Confidence 34455555555555555 5555555555542 2233445555555555555555555555555554 23 24455555
Q ss_pred HHHHHhc---------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCC--C
Q 012879 250 IDTYAKC---------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMH--------GMGKEAVENFGRMQKVGLK--P 309 (454)
Q Consensus 250 ~~~~~~~---------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~--p 309 (454)
..+|... |++++|++.|++..+..| +...|..+..+|... |++++|+..|++..+.... -
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 5555555 555555555555555444 344455555555554 5555555555555543110 1
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
+...+..+..++...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444555555555555555555555555443 1122334444555555555555555544443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=5.3e-11 Score=108.52 Aligned_cols=315 Identities=11% Similarity=0.006 Sum_probs=178.9
Q ss_pred hhhhhhHHHHHHHH--HccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHH--HhccCCcchHh---------
Q 012879 28 LHHSQLFNTLLHFY--SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRT--CATLSHPNLGT--------- 94 (454)
Q Consensus 28 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~--------- 94 (454)
.|+..+-+.|-+.| .+.+++++|..+++++.+....--. -+ +...|-.++.. ....+....+.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~-~~---~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEE-DQ---DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCC-CH---HHHHHHHHHHHHHHHHHHTCCC--------CHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcc-cH---HHHHHHHHHHHHHHHHHhhcCcccccccccchH
Confidence 36666777777777 8899999999999998743222111 02 33444444332 11122233333
Q ss_pred HHHHHHHHcCCCCCc----hhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 012879 95 QLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-- 168 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-- 168 (454)
+.++.+.....+.+. ..+......+...|++++|...|++..+ ++.....
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~~~ 138 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK------------------------ELPFVSDDI 138 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------------TGGGCCCHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------------HHhhCCChH
Confidence 555554332211111 1122233334455666666555544321 1111111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC-----hhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCC
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS-----EITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFT 239 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 239 (454)
....++..+...|...|+++.|+..+++..+.....++ ..++..+...+...|++++|.+.+++..+. +..
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 01234555666666666766666666665542111111 345566666777777777777776666553 111
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISV-----ERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP 309 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p 309 (454)
+....++..+..+|...|++++|.+.|++... ..| ...++..+...+.+.|++++|...+++..+. +-+.
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 22345677788888888888888888887766 333 3456777778888888888888888887653 1122
Q ss_pred cHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 310 NRVTFLSVLNACSHGGL---VEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
....+..+...+...++ ..+|..+++.. +..| ....+..+...|...|++++|.+.|++..
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23345555566667777 66666666552 2222 24456677888888888888888887653
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=4.4e-12 Score=106.83 Aligned_cols=208 Identities=6% Similarity=-0.092 Sum_probs=147.3
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSI 282 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 282 (454)
+.|+..+......+...|++++|...|+...+.. ++++...+..+..++...|++++|++.|++.....| +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4566778888888888899999999888888874 214667777788888888899999988888888766 45677888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHH
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNR-------VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGC 352 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 352 (454)
...+...|++++|+..+++..+... .+. ..|..+...+...|++++|...|+.+.+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8888888888888888888877532 233 3466677777888888888888888875 3454 456667
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
+..+|...|+. .++++... ..+...|.... ....+.+++|+..++++++..|.++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77777655543 22222222 12333333332 2334568999999999999999887666655544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=3.7e-12 Score=103.24 Aligned_cols=171 Identities=14% Similarity=-0.024 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
....+..+...+...|++++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344566677777777788888877777766644 55667777777777777777777777776652 2355666667777
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...|++++|.+.++.+.+. .+.+...+..+..++...|++++|.+.++++... +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 77777788888777777764 2334566666777777777777777777766554 23456677777777777888888
Q ss_pred HHHHHHHHHhhcCCCC
Q 012879 400 ERVTRKILEMERGYGG 415 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~ 415 (454)
.+.++++++..|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 8888877777776543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=4.8e-12 Score=123.62 Aligned_cols=169 Identities=12% Similarity=0.061 Sum_probs=100.3
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
.|.+...++.|..+|.+.|++++|++.|++..+..| +..++..+..+|.+.|++++|+..|++..+.. +-+...|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455666777777777777777777777777776655 45566667777777777777777777766642 1234566666
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
..++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++..+..| +...+..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 66666666666666666666653 22 244455555555555555555555555444322 23445555555555555
Q ss_pred hhHHHHHHHHHHHhhc
Q 012879 396 VEMGERVTRKILEMER 411 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~ 411 (454)
+++|.+.++++++..+
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 5555555555554433
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1e-12 Score=106.53 Aligned_cols=169 Identities=14% Similarity=0.035 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 456778888999999999999999987753 346778888999999999999999999999875 23467788889999
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHH
Q 012879 357 LGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435 (454)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (454)
+...|++++|.+.++++... +.+...+..+...+...|++++|.+.++++++..|.++..+..++.++...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988766 44678888999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHhhcccccC
Q 012879 436 LRRVMDERNAFKV 448 (454)
Q Consensus 436 ~~~~~~~~~~~~~ 448 (454)
.+++..+......
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 9999987654433
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=5.2e-10 Score=101.74 Aligned_cols=273 Identities=11% Similarity=0.003 Sum_probs=152.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCCh----hhHHHHHHHHhccCCcchHhHHHHHHHHcCCC-CC
Q 012879 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDS----FTYSFLIRTCATLSHPNLGTQLHAVISKVGFQ-SH 108 (454)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 108 (454)
+......+...|++++|...+++.. ..... . +. .+++.+...+...|++++|...+++..+.... ++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al---~~~~~--~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLAL---EELPP--G---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HTCCT--T---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH---HcCCC--C---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 3444556678899999999999987 43322 2 32 25666677788899999999999887763211 11
Q ss_pred ----chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcchHHHHHHH
Q 012879 109 ----VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR----NVVSWTGIIDG 180 (454)
Q Consensus 109 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~ 180 (454)
..++..+...+...|++++|...+++. .++......+ ....+..+...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHH
Confidence 123455666777778887777766543 2222222221 11244556666
Q ss_pred HHhcCChHHHHHHHHHHHHccCCC--C--ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch-HHHH----HHHHH
Q 012879 181 YTRMNRSNEALALFRKMVACEYTE--P--SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-IRVL----NCLID 251 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~----~~l~~ 251 (454)
+...|++++|...+++.... ... + ...++..+...+...|++++|...+++.......+.. .... ...+.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 67777777777777776553 111 0 1234555556666666666666666665543111101 1111 12333
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcH-HHHHHHHHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERKN-----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPNR-VTFLSVLNAC 321 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~ 321 (454)
.+...|++++|...+++.....+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 455667777777777666553221 113445555666666666666666665431 211122 1344444555
Q ss_pred hcCCChHHHHHHHHHHHH
Q 012879 322 SHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~ 339 (454)
...|+.++|...+++...
T Consensus 304 ~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 566666666666665544
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.39 E-value=2.3e-11 Score=105.81 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=142.5
Q ss_pred hcCChHHHHHHHHHHHHcc------CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc------CCCCchHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACE------YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR------GFTAFDIRVLNCLI 250 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~ 250 (454)
..|++++|+..|++..+.. ..+....++..+...+...|++++|...++++.+. +..|....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666666666554410 11223456677777777788888887777777654 33344566788888
Q ss_pred HHHHhcCChhHHHHHHHHhhhc--------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-cHHHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV------GLKP-NRVTF 314 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~ 314 (454)
.+|...|++++|.+.|++.... .| ...++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877654 12 2456777778888888888888888887654 1122 34567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhc------CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHhcCCCCCC-cH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEEC------EVLPD-IKHYGCLIDMLGRAG------RLEQAEKTALGIPSEIT-DV 380 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p-~~ 380 (454)
..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+ .+..+...++......| ..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 777888888889998888888887631 11222 223333333333322 24444455555544423 34
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.++..+...|...|++++|...++++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777888888888888888888887754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=6.5e-12 Score=105.81 Aligned_cols=196 Identities=13% Similarity=-0.026 Sum_probs=154.5
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
+.++..+......+...|++++|+..|++..... ++...+..+..++...|++++|+..+++..+... -+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3477889999999999999999999999998875 5777777788999999999999999999998642 256778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc---HhHHHHHH
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDI-------KHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVWRTLL 387 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~ 387 (454)
..++...|++++|...++...+.. +.+. ..|..+...+...|++++|++.|+++....|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 899999999999999999998752 2234 45778888889999999999999999888565 56777777
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.+|... +...++++....+.+...|. .......|.+++|...+++..+.+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 777554 44556666666555533333 3334556778999999999887654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=3.5e-11 Score=117.53 Aligned_cols=164 Identities=10% Similarity=0.007 Sum_probs=116.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
..+|+.+...+.+.|++++|+..|++..+. .+-+..++..+..++.+.|++++|...|+++.+. .|.+...+..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 356777777777777777777777777763 3344667777777777777777777777777775 455677777777
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
.+|...|++++|++.|++..+..| +...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777777655 55677777777777777777777777777653 2245667777777777777777
Q ss_pred HHHHHHHHHH
Q 012879 330 GLNFFDKMVE 339 (454)
Q Consensus 330 a~~~~~~~~~ 339 (454)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=4.3e-10 Score=96.60 Aligned_cols=243 Identities=8% Similarity=-0.027 Sum_probs=160.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 148 TGLVKWGELEFARSLFEEMPCRNVV-SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
+-..-.|++..++.-...+...+.. .-..+.++|...|++... . ...|....+..+...+ ..+ +
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~-~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------D-PTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------C-SSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------C-CCCHHHHHHHHHHHHh-ccc----H
Confidence 3345578888888866666543332 333455788888887742 1 2234444444444443 222 6
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK---NLVSWTSIISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 303 (454)
...+++....+ +++......+..++...|++++|++++.+.....| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 86 ~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 86 IEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777776654 22455556788888888999999999888766543 45667778888888999999999998887
Q ss_pred hCCCCC-----cHHHHHHHHHHHh--cCC--ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 304 KVGLKP-----NRVTFLSVLNACS--HGG--LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 304 ~~~~~p-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
+. .| +..+...+..++. ..| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 55 3556666665532 223 788889999988653 3443333444557888899999988887654
Q ss_pred CC-----------CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 375 SE-----------ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 375 ~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
.. +.++.++..+|......|+ +|.++++++.+..|.++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 42 2355666566666666676 78888888888888776
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=5.2e-11 Score=102.51 Aligned_cols=192 Identities=7% Similarity=-0.069 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C-CcHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN----LVSWTSIISGFAMHGMGKEAVENFGRMQKVGL-K-PNRVTFL 315 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~-p~~~~~~ 315 (454)
++..+..+...+.+.|++++|+..|+++....|+ ...+..+..+|.+.|++++|+..|++..+... . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444444444445555555555555555444332 23444444445555555555555555444311 0 1122333
Q ss_pred HHHHHHhc--------CCChHHHHHHHHHHHHhcCCCCCh---------------hHHHHHHHHHHhcCChHHHHHHHhc
Q 012879 316 SVLNACSH--------GGLVEEGLNFFDKMVEECEVLPDI---------------KHYGCLIDMLGRAGRLEQAEKTALG 372 (454)
Q Consensus 316 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (454)
.+..++.. .|++++|...|+.+.+.+.-.+.. ..+..+..+|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34444444 555555555555555431111111 1124567788889999999998888
Q ss_pred CCCCCCc----HhHHHHHHHHHHcC----------CChhHHHHHHHHHHHhhcCCCC---cHHHHHHHHHhcCCcCcH
Q 012879 373 IPSEITD----VVVWRTLLGACSFH----------GNVEMGERVTRKILEMERGYGG---DYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 373 ~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 433 (454)
+....|+ ...+..+..+|... |++++|+..++++++..|+++. ....+..++.+.|+++++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 7665443 45677777777755 8889999999999999888753 344455555555555443
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=6.9e-11 Score=102.75 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=118.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHc------cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc------CCC
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVAC------EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR------GFT 239 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 239 (454)
.++..+...+...|++++|+..++++.+. +..+....++..+...+...|++++|...++++.+. ...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666677777777777777777776653 112233456677777777777777777777776654 112
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----- 305 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 305 (454)
|....++..+..+|...|++++|...|+++... .| ...++..+...|...|++++|...+++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 435667777788888888888888888777664 22 2346667777788888888888888776642
Q ss_pred --CCCCcH-HHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 306 --GLKPNR-VTFLSVLNACSHGGL------VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 306 --~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
...+.. ..+..+.......+. +..+...++.... ..+....++..+...|...|++++|.+++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111211 122222222222222 2222222222110 111234567778888888888888888887654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=6.2e-10 Score=95.66 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=88.8
Q ss_pred HHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012879 190 ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 269 (454)
|+..|++.... + +++..++..+..++...|++++|.+++.+....+-.+.+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45555555443 2 344444445555555666666666666655444321235555555666666666666666666666
Q ss_pred hhcCC-----ChhhHHHHHHHH--HhcC--ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 270 SVERK-----NLVSWTSIISGF--AMHG--MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 270 ~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+..| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55544 133333344332 1122 566666666665443 233222233333555566666666666554432
Q ss_pred c-C-------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012879 341 C-E-------VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT 378 (454)
Q Consensus 341 ~-~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 378 (454)
. . -+.++.+...+|......|+ +|.++++++.+..|
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 1 0 02234444344444444454 55555555554433
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=8.7e-11 Score=102.86 Aligned_cols=212 Identities=9% Similarity=-0.071 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
++++|...|.+. ...+...|++++|...+.+..+. |..+....+++.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366666666655 23456677777777777766553 2112125677788888888888888
Q ss_pred HHHHHHHhhhcCC---C----hhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCC----CCc-HHHHHHHHHHHhcCCChH
Q 012879 262 ASKLFEDISVERK---N----LVSWTSIISGFAMH-GMGKEAVENFGRMQKVGL----KPN-RVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 262 a~~~~~~~~~~~~---~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~~~~~ 328 (454)
|+..|++.....+ + ..+++.+...|... |++++|+..|++..+... .+. ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8888887766522 2 34677777788885 888888888888765311 101 345777778888888888
Q ss_pred HHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH------hHHHHHHHHHH--cCCC
Q 012879 329 EGLNFFDKMVEECEVLPDI-----KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV------VVWRTLLGACS--FHGN 395 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~ 395 (454)
+|...|+...+...-.+.. ..+..+..++...|++++|...|++.....|+. ..+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 8888888887652111121 145667777888888888888888877763432 12344555554 4566
Q ss_pred hhHHHHHHHHHHHhhcCC
Q 012879 396 VEMGERVTRKILEMERGY 413 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~ 413 (454)
+++|+..|+++.+.+|..
T Consensus 256 ~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHhccCCccHHHH
Confidence 777777777766555543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=9.2e-10 Score=96.31 Aligned_cols=212 Identities=13% Similarity=-0.054 Sum_probs=152.1
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc---CCCCC-hhhHHhHHHHHHccCchhHHHHHH
Q 012879 155 ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE---YTEPS-EITILAVLPAIWQNGDVKSCQLIH 230 (454)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 230 (454)
++++|...|++. ...|...|++++|+..|.+..... +.+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777766554 456777888888888888776531 11122 457888888888888998888888
Q ss_pred HhhhhcC----CCCchHHHHHHHHHHHHhc-CChhHHHHHHHHhhhcCC---C----hhhHHHHHHHHHhcCChhHHHHH
Q 012879 231 GYGEKRG----FTAFDIRVLNCLIDTYAKC-GCIFSASKLFEDISVERK---N----LVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 231 ~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
++..+.. .......++..+..+|... |++++|+..|++.....| + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8877641 1111245788899999996 999999999999877533 1 34678888999999999999999
Q ss_pred HHHHHhCCCCCcH------HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh------hHHHHHHHHHH--hcCChH
Q 012879 299 FGRMQKVGLKPNR------VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI------KHYGCLIDMLG--RAGRLE 364 (454)
Q Consensus 299 ~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~ 364 (454)
|++..+....... ..+..+..++...|++++|...|++..+ +.|+. ..+..++.+|. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999885433221 1566777888899999999999999874 33432 13445566665 457899
Q ss_pred HHHHHHhcCCCCCCcH
Q 012879 365 QAEKTALGIPSEITDV 380 (454)
Q Consensus 365 ~A~~~~~~~~~~~p~~ 380 (454)
+|+..|+++....|+.
T Consensus 258 ~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTSSCCCHHH
T ss_pred HHHHHhccCCccHHHH
Confidence 9999999988764443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.4e-09 Score=93.40 Aligned_cols=169 Identities=7% Similarity=-0.058 Sum_probs=99.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---hhhHHhHHHHHHccCchhHHHHHHHhhhhcCC-CCchHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---EITILAVLPAIWQNGDVKSCQLIHGYGEKRGF-TAFDIRV 245 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 245 (454)
+...+..+...+.+.|++++|+..|+++.+. .+.+ ...+..+..++...|+++.|...++.+.+..- .+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4455556666677777777777777777663 2222 45566666777777777777777777766521 1223456
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHhhhcCCCh-hhH-----------------HHHHHHHHhcCChhHHHHHH
Q 012879 246 LNCLIDTYAK--------CGCIFSASKLFEDISVERKNL-VSW-----------------TSIISGFAMHGMGKEAVENF 299 (454)
Q Consensus 246 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~ 299 (454)
+..+..++.. .|++++|+..|+++....|+. ... ..+...|.+.|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666777777 777777777777777665532 222 33345555666666666666
Q ss_pred HHHHhCCCCC--cHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHh
Q 012879 300 GRMQKVGLKP--NRVTFLSVLNACSHG----------GLVEEGLNFFDKMVEE 340 (454)
Q Consensus 300 ~~m~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 340 (454)
+++.+..... ....+..+..++... |++++|...|+.+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6655532111 223444444555433 5556666666666554
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=7.1e-10 Score=92.95 Aligned_cols=188 Identities=10% Similarity=-0.029 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTFL 315 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~ 315 (454)
++..+..+...+.+.|++++|+..|+++....|+. ..+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45566677888899999999999999998876642 46777888999999999999999998875322111 2333
Q ss_pred HHHHHHhc------------------CCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 316 SVLNACSH------------------GGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 316 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+..++.. .|++++|...|+.+.+. .|+ ...+...... +.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~---------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDR---------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHH----------
Confidence 44444433 45666666666666653 122 2222111100 000000
Q ss_pred CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 377 ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 377 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
.......+...|.+.|++++|+..++++++..|+++ ..+..++.++.+.|++++|.+.++.+...+....
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 001123456778889999999999999999888754 5688899999999999999999998887665543
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.4e-09 Score=89.91 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+..+|.+.|++++|+..|++..+..| +...+..+...+...|++++|+..|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555544433 334444444445555555555555554444
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=7e-08 Score=90.47 Aligned_cols=357 Identities=8% Similarity=-0.060 Sum_probs=225.3
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC-
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS- 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~- 88 (454)
+...++.+|+...+.-| . |+++.+..+|++.. .. . | +...|...+.-..+.+
T Consensus 10 ~i~~aR~vyer~l~~~P---~--------------~~~e~~~~iferal---~~--~--p---s~~LW~~Y~~f~~~~~~ 62 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYM---S--------------KDYRSLESLFGRCL---KK--S--Y---NLDLWMLYIEYVRKVSQ 62 (493)
T ss_dssp --CCHHHHHHHHHHHHH---T--------------TCHHHHHHHHHHHS---TT--C--C---CHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHCC---C--------------CCHHHHHHHHHHHh---cc--C--C---CHHHHHHHHHHHHHhCc
Confidence 47788888888887765 2 88999999999997 31 2 6 8889888888777666
Q ss_pred CcchHhHHHHHHHHc-CC-CCCchhHHHHHHHHHh----CCChhHHHHHHhhCCC-CCc---hhHHHHHHHHH-------
Q 012879 89 HPNLGTQLHAVISKV-GF-QSHVYVNTALVNMYVS----LGFLKDSSKLFDEMPE-RNL---VTWNVMITGLV------- 151 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~---~~~~~ll~~~~------- 151 (454)
..+....+|+..+.. |. +.+...|...+..+.. .|+.+.+.++|++... |.. ..|......-.
T Consensus 63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccH
Confidence 356778888887764 43 3356778877776542 4678889999998865 321 12222211110
Q ss_pred ------hcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhcC--C-----hHHHHHHHHHHHHccCCCCChhhHHhHH
Q 012879 152 ------KWGELEFARSLFEEMPC----RNVVSWTGIIDGYTRMN--R-----SNEALALFRKMVACEYTEPSEITILAVL 214 (454)
Q Consensus 152 ------~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 214 (454)
..+.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|++++. ..+.+...|...+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~--~~p~~~~lW~~ya 220 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD--SFYYAEEVYFFYS 220 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH--cCCCCHHHHHHHH
Confidence 01122233333332221 13335555444432221 1 3456789999888 4566678888888
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH-HHHHHHhhhcC-------C---ChhhHHHHH
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA-SKLFEDISVER-------K---NLVSWTSII 283 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~-------~---~~~~~~~l~ 283 (454)
..+...|+.+.|..++++.... |.+...+.. |......++. ..+.+...... + ....|...+
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 8889999999999999999987 445444432 2222111221 11221110000 1 124566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH-GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
....+.++.+.|..+|++. +. ...+...|......-.. .++.+.|..+|+...+.++ .++..+...++...+.|+
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCC
Confidence 7666778899999999998 32 12344444332221112 2369999999999988632 234556667787788999
Q ss_pred hHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 363 LEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+.|..+|+.+.. ....|...+.--...|+.+.+..+++++.+.
T Consensus 370 ~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 370 EENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999853 5778888888777889999999999888853
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.3e-09 Score=90.10 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=116.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHh----------------HHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA----------------VLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
......+...|++++|+..|++..+. .+.+...+.. +..++...|++++|...+++..+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 33445666777777777777777663 2223445555 788888999999999999998887
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM--GKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.|.+...+..+..+|...|++++|...|+++.+..| +..++..+...|...|+ ...+...+..... ..|....+.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 566888899999999999999999999999988877 66778888877765543 3444555554432 233333333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
....++...|++++|...|++..+ +.|+......+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 344455567888888888888874 45665544433
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.4e-10 Score=86.95 Aligned_cols=131 Identities=16% Similarity=0.230 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++.+... . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 34555666666666666666666665543 224455555556666666666666666666553 1 22344455555555
Q ss_pred HhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 358 GRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
...|++++|.+.++++... +.+..++..+...+...|++++|...++++++..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555554433 22344455555555555555555555555555443
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=2.8e-09 Score=80.88 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
|..+...+...|++++|..+++++.+. .+.+...+..+...+...|+++.|...++++.+.+ |.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 445555566666666666666666552 22334444555555555555555555555555442 22444455555555
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
...|++++|.+.++++....| +...+..+...+...|++++|...++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555544433 334444444555555555555555554443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=2.1e-09 Score=105.44 Aligned_cols=172 Identities=10% Similarity=-0.054 Sum_probs=129.8
Q ss_pred HccCchhHHHHHHHhhh--------hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHh
Q 012879 218 WQNGDVKSCQLIHGYGE--------KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAM 288 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~ 288 (454)
...|++++|.+.++++. +. .|.+...+..+..+|...|++++|++.|+++.+..| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888877 33 455677888888888888888888888888887755 66778888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|++++|+..|++..+... -+...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877532 245667777788888888888 8888888764 22346677888888888888888888
Q ss_pred HHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 369 TALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 369 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
.|+++.+..|+ ...+..+..++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888877554 5667777777766555
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=1.7e-09 Score=90.63 Aligned_cols=189 Identities=13% Similarity=-0.011 Sum_probs=137.9
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCC-CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh----hHH
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT-AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV----SWT 280 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 280 (454)
+...+..+...+...|++++|...|+.+.+..-. +.....+..+..+|.+.|++++|+..|+++.+..|+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677788899999999999999999986321 22356788899999999999999999999998867432 455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 281 SIISGFAM------------------HGMGKEAVENFGRMQKVGLKPNRV-TFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 281 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
.+..++.. .|++++|...|+++.+. .|+.. ...... ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~--------------~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK--------------RLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH--------------HHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH--------------HHHHHHHH-
Confidence 55555554 57899999999999886 34332 221111 11111110
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
.......+...|.+.|++++|...|+++.+..|+. ..+..+..++.+.|+.++|++.++.+...+|.+..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01122346677889999999999999988764542 56888899999999999999999999988887543
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=2.1e-09 Score=105.50 Aligned_cols=189 Identities=14% Similarity=0.047 Sum_probs=143.8
Q ss_pred HhcCChHHHHHHHHHHH--------HccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 182 TRMNRSNEALALFRKMV--------ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
...|++++|++.+++.. + ..+.+...+..+...+...|++++|...++++.+. .|.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 67788888888888887 3 33555677888888888889999998888888886 466788888888888
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHH
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 332 (454)
...|++++|++.|++..+..| +...+..+..++.+.|++++ ++.|++..+.. +-+...+..+..++.+.|++++|.+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999999988888766 56778888888888888888 88888888753 2356677888888888899999988
Q ss_pred HHHHHHHhcCCCCC-hhHHHHHHHHHHhcC--------ChHHHHHHHhcCCCCCCc
Q 012879 333 FFDKMVEECEVLPD-IKHYGCLIDMLGRAG--------RLEQAEKTALGIPSEITD 379 (454)
Q Consensus 333 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~p~ 379 (454)
.|+++.+ +.|+ ...+..+..++...+ ++++|.+.+..+....|+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 8888764 3454 556666666665543 367777777777654344
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=7.8e-11 Score=91.77 Aligned_cols=141 Identities=6% Similarity=-0.087 Sum_probs=99.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
.+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344456677777777665543 22 2334455667777777888888777777764 123466777777778888888
Q ss_pred HHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHH-HHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 364 EQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERV-TRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
++|+..|++..+..| +..+|..+...|.+.|++++|.+. ++++++..|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877766544 467788888888888888776654 588888888888888888888877775
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=5.8e-09 Score=90.88 Aligned_cols=163 Identities=8% Similarity=-0.025 Sum_probs=86.9
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHH-H
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSII-S 284 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~-~ 284 (454)
+...+..+...+...|+++.|...++++.+. .|.+...+..+..++...|++++|...++++....|+........ .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 3444555555555666666666666666554 344556666666666666666666666666655545433222222 2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
.+...++.++|...+++..+.. +.+...+..+...+...|++++|...|+++.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2444555555666666555542 224445555555666666666666666666554111111344555555555555555
Q ss_pred HHHHHHh
Q 012879 365 QAEKTAL 371 (454)
Q Consensus 365 ~A~~~~~ 371 (454)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5555444
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=9.4e-09 Score=85.11 Aligned_cols=174 Identities=9% Similarity=-0.092 Sum_probs=82.8
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcC----ChhHHHHHHHH
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHG----MGKEAVENFGR 301 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 301 (454)
|.+.|++..+.| ++..+..+...|...+++++|+..|++..+. .++..+..+...|.. + ++++|..+|++
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 445555555543 4555555566666666666666666655542 244444445544444 3 55555555555
Q ss_pred HHhCCCCCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHhc
Q 012879 302 MQKVGLKPNRVTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVL-PDIKHYGCLIDMLGR----AGRLEQAEKTALG 372 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 372 (454)
..+.| +...+..+...|.. .+++++|..+|+...+. +.. ..+..+..|...|.. .+++++|.++|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 55443 33344444444443 45555555555555432 110 013444444444444 4455555555554
Q ss_pred CCCCCCcHhHHHHHHHHHHcC-C-----ChhHHHHHHHHHHHh
Q 012879 373 IPSEITDVVVWRTLLGACSFH-G-----NVEMGERVTRKILEM 409 (454)
Q Consensus 373 ~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 409 (454)
.....++...+..|...|... | +.++|+..++++.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 433322333444444444321 1 455555555555444
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.1e-07 Score=82.59 Aligned_cols=233 Identities=9% Similarity=0.005 Sum_probs=169.1
Q ss_pred HhcCC-hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC--chhHHHHHHHhhhhcCCCCchHHHHHHHHHHH----H
Q 012879 182 TRMNR-SNEALALFRKMVACEYTEPSEITILAVLPAIWQNG--DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY----A 254 (454)
Q Consensus 182 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 254 (454)
.+.|. .++|+.+++.++.. .+-+...|+.-...+...| +++++.++++.+... .|.+..+|+.-..++ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHH
Confidence 34444 46788888888873 3344555677777777777 888888888888876 454666665544444 4
Q ss_pred hc---CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC--
Q 012879 255 KC---GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK--EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-- 326 (454)
Q Consensus 255 ~~---g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 326 (454)
.. +++++++++++++.+..| +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 44 788899999999888766 7778888877778888887 899999999886544 66666666656666665
Q ss_pred ----hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHhcCCCC----CCcHhHHHHHHHHHHcCCChh
Q 012879 327 ----VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ-AEKTALGIPSE----ITDVVVWRTLLGACSFHGNVE 397 (454)
Q Consensus 327 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~ 397 (454)
++++++.++.+... -+-|...|+.+...+.+.|+..+ +.++.+++... ..+...+..+...|.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 78888888888875 23467788888888888887544 55677766553 236678888888888999999
Q ss_pred HHHHHHHHHHH-hhcCCCCcHHHHH
Q 012879 398 MGERVTRKILE-MERGYGGDYVLMY 421 (454)
Q Consensus 398 ~A~~~~~~~~~-~~~~~~~~~~~l~ 421 (454)
+|+++++.+.+ .+|.....|...+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHH
Confidence 99999999886 5776655555443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=3.2e-09 Score=85.10 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
+..+...+...|++++|+..|++.
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333333444444444444444433
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=3.9e-09 Score=84.59 Aligned_cols=61 Identities=20% Similarity=0.040 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc---HhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
...+..+..++...|++++|...|+++....|+ ...+..+...+...|+.++|...+++.+
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 344444444444444444444444444443222 2344444445555555555555554443
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=1.2e-09 Score=84.93 Aligned_cols=118 Identities=8% Similarity=-0.086 Sum_probs=54.3
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 262 (454)
..|++++|+..+.+.... .+.+...+..+...|.+.|++++|.+.++++.+. .|.++.++..+..+|...|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 334444444444444321 1112233334444444445555555444444443 333455555555555555555555
Q ss_pred HHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 012879 263 SKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVEN-FGRMQK 304 (454)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 304 (454)
+..|++..+..| +..++..+...|.+.|++++|.+. +++..+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555554444 344455555555555555443332 344444
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=1.7e-09 Score=104.22 Aligned_cols=158 Identities=10% Similarity=-0.035 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
++++|.+.|++..+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444433333 23344444444444444444444444444432 11233444444444444444444444444
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC---CChhHHHHHHHHHHHhhcC
Q 012879 337 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH---GNVEMGERVTRKILEMERG 412 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~ 412 (454)
..+. .+.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+...+... |++++|.+.++++++.+|.
T Consensus 83 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 83 ASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 4432 112234444444455555555555555544443322 334445555555555 5555555555555555555
Q ss_pred CCCcHH
Q 012879 413 YGGDYV 418 (454)
Q Consensus 413 ~~~~~~ 418 (454)
+...+.
T Consensus 161 ~~~~~~ 166 (568)
T 2vsy_A 161 AVEPFA 166 (568)
T ss_dssp CSCHHH
T ss_pred ccChHH
Confidence 444443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=1e-08 Score=89.37 Aligned_cols=180 Identities=9% Similarity=-0.038 Sum_probs=127.8
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
.+...+.+......+...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334444444444444556667777888888888888888888773 345567777888888888888888888888877
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-NRVT 313 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~ 313 (454)
. .|............+...++.++|.+.|++.....| +...+..+...+...|++++|+..|.++.+..... +...
T Consensus 180 ~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 Q--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp G--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred h--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 5 342333333444456677778888888888777766 56778888888888888888888888887753221 2556
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
+..+...+...|+.++|...|++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 77788888888888888887777654
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=3.4e-08 Score=85.74 Aligned_cols=216 Identities=11% Similarity=0.108 Sum_probs=174.4
Q ss_pred chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhcCC-ChhhHHHHHHHH----Hhc---CC
Q 012879 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG--CIFSASKLFEDISVERK-NLVSWTSIISGF----AMH---GM 291 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~----~~~---g~ 291 (454)
..++|..+.+.+... .|.+..+|+.-..++...| +++++++.++.+....| +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 346899999999987 5768888998888898888 99999999999998877 666777655554 455 78
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC------h
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE--EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR------L 363 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 363 (454)
+++++.+++++.+...+ +...|+.-...+.+.|.++ ++++.++.+.+. . +-+...|+.-...+.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999986433 6777777666677778877 999999999986 3 3466777766666777776 8
Q ss_pred HHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChh-HHHHHHHHHHHhh---cCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 364 EQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVE-MGERVTRKILEME---RGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 364 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
+++++.++++... +-|...|+.+...+.+.|+.. .+.++.+++.+.+ +.++.++..++.++.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999999887766 447888999888888888754 4667888887766 6677788899999999999999999999
Q ss_pred HHhh
Q 012879 439 VMDE 442 (454)
Q Consensus 439 ~~~~ 442 (454)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=2.4e-08 Score=82.59 Aligned_cols=174 Identities=9% Similarity=-0.088 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC----ChHHHHHHHHH
Q 012879 261 SASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG----LVEEGLNFFDK 336 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 336 (454)
+|.+.|++..+. .++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|+.
T Consensus 4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 345555555553 456666667777777777777777777776654 34455555555655 5 67777777777
Q ss_pred HHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCc---HhHHHHHHHHHHc----CCChhHHHHHHHH
Q 012879 337 MVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITD---VVVWRTLLGACSF----HGNVEMGERVTRK 405 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 405 (454)
..+. + +...+..|...|.. .+++++|.++|++..+..|. +..+..|...|.. .+++++|+..|++
T Consensus 79 A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7553 2 44555666666665 66777777777776666332 5666666666666 6677777777777
Q ss_pred HHHhhcCCCCcHHHHHHHHHhc-C-----CcCcHHHHHHHHhhcc
Q 012879 406 ILEMERGYGGDYVLMYNILAGV-G-----RFGDAERLRRVMDERN 444 (454)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 444 (454)
+.+. +.++..+..++.+|..- | ++++|.+.+++..+.|
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7766 44555666677766543 2 6677777777766654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=9.2e-10 Score=106.08 Aligned_cols=156 Identities=10% Similarity=-0.090 Sum_probs=121.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988753 235678888999999999999999999999864 23457888999999999999999999
Q ss_pred HHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc---CCcCcHHHHHHHHhhcc
Q 012879 369 TALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV---GRFGDAERLRRVMDERN 444 (454)
Q Consensus 369 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 444 (454)
.+++..+..| +...+..+..+|...|++++|++.++++++..|.+...+..++.++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999877644 5788999999999999999999999999999999999999999999999 99999999999998876
Q ss_pred ccc
Q 012879 445 AFK 447 (454)
Q Consensus 445 ~~~ 447 (454)
...
T Consensus 159 p~~ 161 (568)
T 2vsy_A 159 VGA 161 (568)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=3.7e-09 Score=93.14 Aligned_cols=202 Identities=9% Similarity=0.023 Sum_probs=116.5
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 262 (454)
..|++++|.+++++..+. . +.+ + +...++++.|...|..+ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~-~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY-L-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH-H-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHH-c-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence 457888999999988763 1 111 0 01134555555444432 3455666777777
Q ss_pred HHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHH
Q 012879 263 SKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 263 ~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a 330 (454)
...|.+..... .+ ..+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 77666655431 11 235666666677777777777777665432 1111 12455566666666 777777
Q ss_pred HHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc----HhHHHHHHHHHHcCCChhHH
Q 012879 331 LNFFDKMVEECEVLP----DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD----VVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A 399 (454)
+..|++..+...-.. ...++..+...|.+.|++++|++.|++.... .++ ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 777776665311100 1345666677777777777777777766543 111 12455555666666777777
Q ss_pred HHHHHHHHHhhcCC
Q 012879 400 ERVTRKILEMERGY 413 (454)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (454)
...+++++ ..|..
T Consensus 215 ~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 215 QKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHT-TSTTS
T ss_pred HHHHHHHh-CCCCC
Confidence 77777777 66653
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=1.5e-08 Score=95.04 Aligned_cols=336 Identities=10% Similarity=-0.043 Sum_probs=212.9
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCC-hhHHHHHHhhCCC------CCchhHHHHHHHHH----hcCCH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDEMPE------RNLVTWNVMITGLV----KWGEL 156 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~------~~~~~~~~ll~~~~----~~~~~ 156 (454)
|+++.+..+|+..+.. .|++..|...+....+.++ .+....+|+.... .+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999884 4799999999988877763 3556666666442 35567887777654 35678
Q ss_pred HHHHHHHhhCCC-CCc---chHHHHHHHHH-------------hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc
Q 012879 157 EFARSLFEEMPC-RNV---VSWTGIIDGYT-------------RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ 219 (454)
Q Consensus 157 ~~A~~~~~~~~~-~~~---~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (454)
+.+.++|++... |.. ..|......-. ..+.+..|..+++++... -...+...|...+..-..
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~-~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL-IRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHhc
Confidence 899999988765 211 12221111100 112333445555555432 111233355544444322
Q ss_pred cC----c---hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh
Q 012879 220 NG----D---VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 220 ~~----~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (454)
.+ + .+.+..+|+++... .|.++..|...+..+.+.|+.+.|..+|++.... |....... .|....+.
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~ 258 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDE 258 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTC
T ss_pred CCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcch
Confidence 11 1 34567889998886 3557889999999999999999999999999988 75443222 22222222
Q ss_pred hHHHHHHHHHHhC---------CCCC---cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 012879 293 KEAVENFGRMQKV---------GLKP---NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA 360 (454)
Q Consensus 293 ~~A~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (454)
++. ++.+.+. +..+ ....|...+....+.++.+.|..+|+.+ +. . ..+..+|...+..-...
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHH
Confidence 222 2222221 0011 1244666666666778899999999999 43 2 23444554333322333
Q ss_pred -CChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 361 -GRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 361 -g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++++.|..+|+......|+ +..+...++-....|+.+.|..+|+++ +.....|...+..-...|+.+.+..+++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3699999999987765343 445566777777889999999999997 2345567778888888899999999888
Q ss_pred HHhh
Q 012879 439 VMDE 442 (454)
Q Consensus 439 ~~~~ 442 (454)
+..+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=1.5e-09 Score=94.28 Aligned_cols=96 Identities=9% Similarity=-0.113 Sum_probs=47.6
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...+..+...+...|++++|...++.+.+. .|.+...+..+..+|.+.|++++|...+++..+..| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334444445555555555555555555544 233444555555555555555555555555544433 33444444455
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 012879 286 FAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~ 304 (454)
+...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554443
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=2.4e-08 Score=87.96 Aligned_cols=224 Identities=10% Similarity=-0.070 Sum_probs=145.9
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHH
Q 012879 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTR-MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIH 230 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 230 (454)
..|++++|.+++++..+..... +.. .+++++|...|.+. ...+...|++++|...+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHH
Confidence 3577888888887654311111 112 46777777777765 23456678888887777
Q ss_pred Hhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHH
Q 012879 231 GYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENF 299 (454)
Q Consensus 231 ~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~ 299 (454)
.+..+. +.......+++.+..+|...|++++|+..|++..... .+ ..+++.+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 776553 1111124577788888888888888888888776541 11 2456777777877 8999998888
Q ss_pred HHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 012879 300 GRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 300 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
++..+. |..+ ...++..+...+...|++++|+..|++..+...-.++ ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887652 1111 1356777888888899999999999888764111111 235566677777889999999999
Q ss_pred hcCCCCCCc------HhHHHHHHHHHHcCCChhHHHH
Q 012879 371 LGIPSEITD------VVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 371 ~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
++.. ..|+ ......++.++ ..|+.+.+.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8877 5332 12344455555 5677665555
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=5.4e-08 Score=80.55 Aligned_cols=129 Identities=13% Similarity=-0.039 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 145 VMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 145 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
.+...+...|++++|...|++...++...+..+..++...|++++|+..|++..+. .+.+...+..+..++...|+++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHH
Confidence 34444555566666666666655555556666666666666666666666666552 2334445555555555555555
Q ss_pred HHHHHHHhhhhcC--------------CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 225 SCQLIHGYGEKRG--------------FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 225 ~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
+|...++.+.+.. ..|.....+..+..+|...|++++|.+.|++.....|+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 5555555555431 11223355556666666666666666666666555443
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=1.6e-07 Score=82.02 Aligned_cols=168 Identities=10% Similarity=-0.056 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCc--
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-------VSWTSIISGFAMHGMGKEAVENFGRMQKVGL---KPN-- 310 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~-- 310 (454)
...+...+..+...|++++|.+.+++..+..+.. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445556677778888888888887766543321 1233344556667788888888777764311 111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-------
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT------- 378 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------- 378 (454)
..+++.+...|...|++++|...++++.+.....|+ ..++..+..+|...|++++|.+.+++.....+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346677777777788888888888777632111111 14666777777777777777777776544311
Q ss_pred cHhHHHHHHHHHHcCCChhHH-HHHHHHHHHhh
Q 012879 379 DVVVWRTLLGACSFHGNVEMG-ERVTRKILEME 410 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 410 (454)
-..+|..+...|...|++++| ...++++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 145667777777777777777 66677766543
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=3.1e-09 Score=82.30 Aligned_cols=95 Identities=8% Similarity=-0.112 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
.+..+...+.+.|++++|...|+++....| +...|..+..+|...|++++|++.|+++++..|.++..|..++.+|.+.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 344444555555555555555555544422 3455555555555556666666666666666555555555566666666
Q ss_pred CCcCcHHHHHHHHhhc
Q 012879 428 GRFGDAERLRRVMDER 443 (454)
Q Consensus 428 g~~~~a~~~~~~~~~~ 443 (454)
|++++|.+.|++..+.
T Consensus 118 g~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 118 KAPLKAKECFELVIQH 133 (151)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666665555543
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=7.6e-09 Score=77.62 Aligned_cols=110 Identities=8% Similarity=-0.056 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGAC 390 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~ 390 (454)
..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++.... +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 35566667777888888888888887764 2335677777788888888888888888877665 33567788888888
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
...|++++|++.|+++++..|.+..++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888887776666554
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=5.5e-08 Score=85.01 Aligned_cols=160 Identities=14% Similarity=-0.017 Sum_probs=101.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCcHH----HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHH
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVG-LKPNRV----TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCL 353 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 353 (454)
+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+...-.++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566666666666666665532 122211 2233455556666777777777777653111122 2256677
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-------CCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------CCcHHH
Q 012879 354 IDMLGRAGRLEQAEKTALGIPS-------EIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVL 419 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~-------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 419 (454)
..+|...|++++|...|+++.. ..+ ...++..+...|...|++++|++.++++++..+.. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777776652 111 23467788888888888888888888888776542 345777
Q ss_pred HHHHHHhcCC-cCcHHHHHHHHhh
Q 012879 420 MYNILAGVGR-FGDAERLRRVMDE 442 (454)
Q Consensus 420 l~~~~~~~g~-~~~a~~~~~~~~~ 442 (454)
++.++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888885 4888888877654
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.89 E-value=9.2e-08 Score=81.10 Aligned_cols=182 Identities=7% Similarity=-0.083 Sum_probs=101.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHH-------HHHHhccCCcchHhHHHHHHHHcCCCCCc------
Q 012879 43 LAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFL-------IRTCATLSHPNLGTQLHAVISKVGFQSHV------ 109 (454)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 109 (454)
..+++..|.+.|.++. ...+. ....|..+ ..++...++..++...+....+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~---~~dP~------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~ 86 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT---NYDES------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIA 86 (282)
T ss_dssp TTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEE
T ss_pred cCCCHHHHHHHHHHHH---HhChh------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhc
Confidence 6899999999999999 77766 67788877 4556666666666666554443 22221
Q ss_pred ----------------hhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C
Q 012879 110 ----------------YVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFARSLFEEMPCR-N 170 (454)
Q Consensus 110 ----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~ 170 (454)
..+..+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... +
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 1223345556666677777777766653 32223444444556666666666666544331 1
Q ss_pred ----cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 171 ----VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 171 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
...+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 124445555566666666666666655532 11122 223334444444445555555555544443
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=8.3e-08 Score=83.88 Aligned_cols=166 Identities=12% Similarity=-0.041 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC--CCCC--h
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR-----VTFLSVLNACSHGGLVEEGLNFFDKMVEECE--VLPD--I 347 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 347 (454)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++...+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44556677889999999999999988775322211 2234455667888999999999999875411 1111 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------ 413 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 413 (454)
.+++.+...|...|++++|...++++... .|+ ..++..+...|...|++++|++.++++++..+..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999887632 222 2588899999999999999999999999876441
Q ss_pred CCcHHHHHHHHHhcCCcCcH-HHHHHHHhh
Q 012879 414 GGDYVLMYNILAGVGRFGDA-ERLRRVMDE 442 (454)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 442 (454)
..+|..++.++.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34677899999999999999 776776543
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=2.5e-07 Score=80.79 Aligned_cols=211 Identities=7% Similarity=-0.130 Sum_probs=142.2
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+.++... ...|+..+...+...+.-.-+ .++..-... .......+...+..+...|++++|...+++....
T Consensus 33 ~~s~~e~g-~~~~~~~~l~~i~~~l~~~~~-----~~~~~~~~~--~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 33 EVSRIESG-AVYPSMDILQGIAAKLQIPII-----HFYEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHTT-SCCCCHHHHHHHHHHHTCCTH-----HHHHTTTSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCC-CCCCCHHHHHHHHHHhCcCHH-----HHhCCCCCC--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34444442 456777777777666643221 111111100 0111223344577888899999999999998775
Q ss_pred CCC-hh------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 273 RKN-LV------SWTSIISGFAMHGMGKEAVENFGRMQKVGLK-PN----RVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 273 ~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+. .. .+..+...+...|++++|+..+++..+.... ++ ..+++.+...|...|++++|..+|+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 11 2334566667778999999999998874222 22 236888888999999999999999998853
Q ss_pred c----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CCcHhHHHHHHHHHHcCCC-hhHHHHHHHHHH
Q 012879 341 C----EVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-------ITDVVVWRTLLGACSFHGN-VEMGERVTRKIL 407 (454)
Q Consensus 341 ~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 407 (454)
. +..+. ..++..+...|.+.|++++|.+.+++.... ..-..+|..+..+|...|+ +++|.+.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 11111 346788899999999999999998876654 1125688899999999995 699999999998
Q ss_pred Hhhc
Q 012879 408 EMER 411 (454)
Q Consensus 408 ~~~~ 411 (454)
+...
T Consensus 265 ~i~~ 268 (293)
T 3u3w_A 265 FFFD 268 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=2e-08 Score=75.99 Aligned_cols=118 Identities=11% Similarity=0.011 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHH
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLG 388 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 388 (454)
+...+..+...+...|++++|...++...+. .+.+...+..+..+|...|++++|.+.+++.... +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445555666666666666666666666542 2224555666666666666666666666665544 234667777888
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
++...|++++|++.++++++..|.+...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888899999999999888888888888888888877664
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=3.1e-06 Score=74.31 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=153.2
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc-C-
Q 012879 181 YTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC-G- 257 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 257 (454)
..+.+..++|++++++++.. .+-+..+|+.--..+...| +++++..+++.+... .|.+..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCC
Confidence 33445556788888888763 3344555666666666667 488888888888876 465777777777666666 6
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC--
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK--------EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-- 326 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 326 (454)
++++++++++++.+..| |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888888888888755 6677776555555555555 888888888876433 66677776666766665
Q ss_pred -----hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHhcCCCC-----
Q 012879 327 -----VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL--------------------EQAEKTALGIPSE----- 376 (454)
Q Consensus 327 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~----- 376 (454)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++...
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 57888888887764 234566777666666666653 3445555555443
Q ss_pred --CCcHhHHHHHHHHHHcCCChhHHHHHHHHHH-HhhcCCCCcHH
Q 012879 377 --ITDVVVWRTLLGACSFHGNVEMGERVTRKIL-EMERGYGGDYV 418 (454)
Q Consensus 377 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~ 418 (454)
.+....+..+++.|...|+.++|.++++.+. +.+|-....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2566778888888888899999999999886 33444333333
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.6e-08 Score=79.90 Aligned_cols=128 Identities=10% Similarity=-0.027 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACS 391 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 391 (454)
.+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++.... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555566666666666666666653 1234556666666666777777777766665554 234566777777777
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCcHHHHHH--HHHhcCCcCcHHHHHHHHhh
Q 012879 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYN--ILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 442 (454)
..|++++|.+.++++++..|.+...+..+.. .+.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7788888888888887777776666543333 36677777777777766543
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=2.4e-08 Score=75.13 Aligned_cols=120 Identities=10% Similarity=-0.067 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHH
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLG 388 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 388 (454)
+...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|.+.+++.....| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3445666667777778888888888877764 233566777777788888888888888877665533 4677888888
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
.+...|++++|...++++++..|.+...+..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998888888888999988888764
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=2.5e-08 Score=74.37 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGA 389 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 389 (454)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|..+++++... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666666777777777777777777664 2234566677777777777777777777776554 3356677788888
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 390 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+...|++++|...++++++..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888887777777777776544
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=3e-07 Score=75.98 Aligned_cols=127 Identities=12% Similarity=-0.078 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+. .|.+...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556777888899999998888763 457788888888888899999999988888886 35577888888888
Q ss_pred HHhcCChhHHHHHHHHhhhcCC-Ch----------------hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 253 YAKCGCIFSASKLFEDISVERK-NL----------------VSWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~-~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
|...|++++|.+.|++.....| +. ..+..+..++...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8889999999988888877544 22 567777788888888888888888887753
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=1.2e-07 Score=70.89 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+......|.+.|++++|+..|++..+. .+.+...|..+..++...|++++|...+++..+. .|.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 3444555555556666666666555542 2334445555555555555555555555555554 23344555555555
Q ss_pred HHhcCChhHHHHHHHHhhhcCC
Q 012879 253 YAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
|...|++++|.+.|++..+..|
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHHHHCc
Confidence 5555555555555555554444
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=3.5e-08 Score=85.59 Aligned_cols=98 Identities=5% Similarity=-0.144 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
...+..+...+...|++++|+..|++..+. .+.+...+..+..++...|++++|...++++.+. .|.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345666777777778888888888777763 3345667777777777778888888777777765 455677777777
Q ss_pred HHHHhcCChhHHHHHHHHhhhc
Q 012879 251 DTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+|...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777788888887777776664
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=4.2e-09 Score=81.63 Aligned_cols=116 Identities=9% Similarity=-0.064 Sum_probs=87.3
Q ss_pred HHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 298 NFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 298 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.++++.+. .| +...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|+++...
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555443 33 3445666777888889999999999888764 2335677788888888889999998888887766
Q ss_pred CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 377 IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 377 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
.| +...+..+..+|...|++++|++.|+++++..|.++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 33 567788888888888999999999998888888766543
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=2.3e-07 Score=73.13 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|...|++..+. .+.+..++..+...+...|+++.|...+++..+. .|.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 3444455555555555555555555542 2233444444444555555555555555554443 23344444445555
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 012879 253 YAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (454)
+...|++++|...|++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 55555555555555544443
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=1.1e-08 Score=81.97 Aligned_cols=128 Identities=9% Similarity=0.039 Sum_probs=98.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCCh-
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM-LGRAGRL- 363 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 363 (454)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 445788889999998887753 346678888888899999999999999998875 23356677778888 7788998
Q ss_pred -HHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 364 -EQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 364 -~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
++|...++++....| +...+..+...+...|++++|+..++++++..|.+...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 999999988776634 46778888889999999999999999999988887543
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=3.5e-08 Score=87.94 Aligned_cols=95 Identities=9% Similarity=-0.103 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
...|..+..+|.+.|++++|+..++++... +.+...|..+..+|...|++++|+..|+++++..|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356677777777888888888877777665 3356777888888888888888888888888888888888888888888
Q ss_pred hcCCcCcH-HHHHHHHh
Q 012879 426 GVGRFGDA-ERLRRVMD 441 (454)
Q Consensus 426 ~~g~~~~a-~~~~~~~~ 441 (454)
+.|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877 33455543
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.1e-07 Score=78.95 Aligned_cols=133 Identities=9% Similarity=-0.089 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHh
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACS 322 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~ 322 (454)
....+...+...|++++|.++|+.+....|+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34445556666666666666666666555533344444455566666666666665433321 111 123444555566
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++....|+
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666666666665532 22132 223334444455555555555555555444333
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=1.5e-07 Score=72.75 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=71.7
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
.|.+...+..+...+...|++++|...|++.....| +...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 344666677777777777777777777777776655 56667777777777777777777777777653 2244566667
Q ss_pred HHHHhcCCChHHHHHHHHHHHHh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
..++...|++++|...|+...+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777888887777777664
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=3.4e-07 Score=68.67 Aligned_cols=116 Identities=5% Similarity=-0.109 Sum_probs=62.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|+..|++.... .+.+...+..+...+...|+++.|...++...+. .|.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 34455555666666666666666666552 2334455555555555566666666665555554 2334555555555
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM 291 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 291 (454)
++...|++++|...|++.....| +...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55556666666666555555443 34444444444444443
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=4.2e-07 Score=67.47 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++.+.+. .|.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 3444445555555555555555555442 1223344444444444444444444444444443 22234444444444
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 012879 253 YAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (454)
+...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=1.6e-07 Score=72.56 Aligned_cols=98 Identities=10% Similarity=-0.024 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|+..|++.... .|.+...|..+..++...|++++|...|+++.+. .|.++..+..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHH
Confidence 4444455555555555555555555542 2233444444444444444444444444444443 23344444444444
Q ss_pred HHhcCChhHHHHHHHHhhhcCC
Q 012879 253 YAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
|...|++++|...|++.....|
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444333
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=6e-06 Score=72.49 Aligned_cols=170 Identities=11% Similarity=0.073 Sum_probs=109.7
Q ss_pred HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCC-ChhHHHHHHhhCCC---CCchhHHHHHHHHHhc-C-CHH
Q 012879 84 CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG-FLKDSSKLFDEMPE---RNLVTWNVMITGLVKW-G-ELE 157 (454)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~-~-~~~ 157 (454)
....+..++|+++++.++..+ +-+..+|+.--.++...| .+++++..++.+.. .+..+|+.-.-.+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 344445678999999999876 456677888888888888 58899998888875 2445676666666655 5 778
Q ss_pred HHHHHHhhCCCCC---cchHHHHHHHHHhcCChH--------HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc----
Q 012879 158 FARSLFEEMPCRN---VVSWTGIIDGYTRMNRSN--------EALALFRKMVACEYTEPSEITILAVLPAIWQNGD---- 222 (454)
Q Consensus 158 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 222 (454)
+++++++.+.+.+ ..+|+.-.-.+...|.++ ++++.++++.+. .+-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccc
Confidence 8888888877643 345554444444445454 777777777763 34555666666666655554
Q ss_pred ---hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 223 ---VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 223 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
++++.+.++++... .|.+...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45555566555554 34455666555555554443
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=8.4e-07 Score=72.50 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+..+...+...|++++|.+.++++++....
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666655554433
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=4.1e-07 Score=68.57 Aligned_cols=112 Identities=3% Similarity=-0.180 Sum_probs=58.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|+..|++..+. .+.+...+..+...+...|++++|...++++.+. .|.+...+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 34555555566666666666666665542 2234455555555555555555555555555554 2334555555555
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFA 287 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~ 287 (454)
++...|++++|.+.|++.....| +...+..+..++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55555555555555555554433 2233333433333
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=4.7e-08 Score=75.07 Aligned_cols=108 Identities=10% Similarity=-0.091 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGA 389 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 389 (454)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++.....| ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345556667788889999999999988875 234567788888889999999999999988776633 56777888888
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
|...|++++|++.++++++..|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999888776554433
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.1e-07 Score=76.04 Aligned_cols=120 Identities=8% Similarity=0.047 Sum_probs=72.9
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH-HHhcCCh-
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT-YAKCGCI- 259 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 259 (454)
...|++++|+..+++..+. .+.+...+..+...+...|+++.|...++++.+. .|.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3456666777777666653 2345566666666666667777777766666665 34455666666666 5566666
Q ss_pred -hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 260 -FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 260 -~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
++|...|+++....| +...+..+...+...|++++|...|+++.+.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 677777766666544 4555666666666667777777766666654
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.1e-08 Score=74.29 Aligned_cols=112 Identities=8% Similarity=-0.091 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGA 389 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 389 (454)
...+......+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..+++.....| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 445666677777888888888888888764 233567777788888888888888888887766533 46677778888
Q ss_pred HHcCCChhHHHHHHHHHHHhh------cCCCCcHHHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEME------RGYGGDYVLMYNIL 424 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~ 424 (454)
+...|++++|++.++++++.. |.+...+..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888877 44444444444443
No 149
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=4.1e-08 Score=71.61 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHHHHHHHHH
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYVLMYNILA 425 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~ 425 (454)
.+..+...+...|++++|...+++.... +.+...+..+...+...|++++|++.++++++..|. +...+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3444445555555555555555544433 223445555555566666666666666666666555 5555556666666
Q ss_pred hc-CCcCcHHHHHHHHhhccc
Q 012879 426 GV-GRFGDAERLRRVMDERNA 445 (454)
Q Consensus 426 ~~-g~~~~a~~~~~~~~~~~~ 445 (454)
+. |++++|.+.+++..+.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCC
T ss_pred HHhCCHHHHHHHHHHHhhccc
Confidence 66 666666666666555443
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.4e-07 Score=70.59 Aligned_cols=95 Identities=9% Similarity=-0.050 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
.+..+...+.+.|++++|+..|++.... +.+...|..+..++...|++++|+..++++++..|.++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444 223455555555555555555555555555555555555555555555555
Q ss_pred CCcCcHHHHHHHHhhc
Q 012879 428 GRFGDAERLRRVMDER 443 (454)
Q Consensus 428 g~~~~a~~~~~~~~~~ 443 (454)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 5555555555555443
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=2.6e-07 Score=72.82 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHH
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLG 388 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 388 (454)
+...+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|+..|++.....| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456667777788888888888888888765 233567778888888888888888888888776633 5778888999
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
+|...|++++|++.|+++++..|.+...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887655443
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=5e-07 Score=73.88 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RK-N----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP 309 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p 309 (454)
...++..+...|...|++++|.+.+++.... .+ + ...+..+...+...|++++|...+++..+. +..+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 3344555555555555655555555554443 12 1 123444555555566666666665554421 1110
Q ss_pred -cHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 310 -NRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 310 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
-..++..+...+...|++++|...+++..+.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1123445555566666666666666655543
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=7.9e-06 Score=71.36 Aligned_cols=192 Identities=8% Similarity=-0.082 Sum_probs=101.1
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC-hhHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG--CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM-GKEAVEN 298 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~-~~~A~~~ 298 (454)
++.+..+++.+... .|.+..+|+.-..++.+.| .+++++.+++++.+..| |..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45566666666654 3446666666655566655 36677777777766644 56666666555566666 4667777
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHhcC--------------CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNACSHG--------------GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA---- 360 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 360 (454)
++++.+..+. |...|+.....+... +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcc
Confidence 7776665433 444444333333222 3355666666666653 223444454443333333
Q ss_pred -------CChHHHHHHHhcCCCCCCcHhHHHHHHH-----HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 361 -------GRLEQAEKTALGIPSEITDVVVWRTLLG-----ACSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 361 -------g~~~~A~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
+.++++++.++++.+..|+. .|..+.. +.-..|..+++...+.++++.+|-...-|..+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23455555555555544432 2221111 11234555666666666666666544444443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=9.3e-08 Score=71.73 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc--------HhHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD--------VVVWR 384 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~ 384 (454)
.+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.....|+ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444444555555555555555555443 1122344444445555555555555544444332111 12344
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+..++...|++++|++.|+++++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444455555555555544443
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=4.1e-08 Score=72.98 Aligned_cols=97 Identities=7% Similarity=-0.164 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
.+..+...+.+.|++++|...|++.....| +...|..+..++...|++++|+..++++++..|.+...+..++.++.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344566777888888888888888777634 6778888888888999999999999999999998888888899999999
Q ss_pred CCcCcHHHHHHHHhhccc
Q 012879 428 GRFGDAERLRRVMDERNA 445 (454)
Q Consensus 428 g~~~~a~~~~~~~~~~~~ 445 (454)
|++++|.+.+++..+.+.
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999988876543
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=1.1e-07 Score=77.61 Aligned_cols=97 Identities=10% Similarity=-0.083 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
..+..+..+|.+.|++++|+..+++.... +.+...+..+..+|...|++++|++.|+++++..|.+...+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677777888888888888888877665 33567888888899999999999999999999999888888889999988
Q ss_pred cCCcCcHH-HHHHHHhhcc
Q 012879 427 VGRFGDAE-RLRRVMDERN 444 (454)
Q Consensus 427 ~g~~~~a~-~~~~~~~~~~ 444 (454)
.|+.+++. ..+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888877 5566655443
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.6e-05 Score=73.53 Aligned_cols=166 Identities=5% Similarity=-0.125 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChh----hHHhHHHHHHccCchhHHHHHHHhhhh----cCCCCchHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEI----TILAVLPAIWQNGDVKSCQLIHGYGEK----RGFTAFDIRV 245 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 245 (454)
+..++..|...|++++|.+.+.++....+..++.. +.+.+...+...|+.+.+..+++.... .+..+.-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566677777777777777776654312222221 122222333455677777776666543 2223334567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCc--HH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE------RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPN--RV 312 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~ 312 (454)
+..+...|...|++++|..+++++... .+ ...++..++..|...|++++|..++++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888888888888888888877554 11 2346777788888888888888888776541 11211 23
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566677788888888887777755
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=2e-07 Score=68.54 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGAC 390 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 390 (454)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++.....| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555556666666666666666553 122455555666666666666666666665554422 455666666777
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
...|++++|.+.++++++..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777766665555544443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=1.6e-07 Score=72.13 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|+..... . +.+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-D-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCcHHHHHHHHHH
Confidence 34444455555555555555555555432 123444455555555555555555555555543 1 22334444555555
Q ss_pred HhcCChHHHHHHHhcCCCC
Q 012879 358 GRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~ 376 (454)
...|++++|.+.|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554433
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=9.3e-08 Score=78.14 Aligned_cols=140 Identities=11% Similarity=-0.038 Sum_probs=68.7
Q ss_pred HhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC--------------hhhHHhH
Q 012879 151 VKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS--------------EITILAV 213 (454)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~l 213 (454)
...|+++++.+.++.-.+ .....+..+...+...|++++|+..|++..+.....|+ ...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 344455555554443222 12345566677777788888888888877763111111 1344455
Q ss_pred HHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCCh
Q 012879 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 292 (454)
..++...|++++|...++.+.+. .|.+...+..+..+|...|++++|...|++.....| +...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554 233455555555555555555555555555554433 333444444444443333
No 161
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=6.4e-07 Score=79.76 Aligned_cols=121 Identities=10% Similarity=-0.079 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---------------hhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---------------EITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
...+..+...+.+.|++++|+..|++..+. . +.+ ...|..+..++.+.|++++|...++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW-L-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-h-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777888888888888888888764 1 111 23444444444444444444444444444
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 295 (454)
. .|.+...+..+..+|...|++++|+..|+++.+..| +...+..+..++...|+.++|
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 233444444444444444444444444444444433 333444444444444444444
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=1.4e-07 Score=71.80 Aligned_cols=102 Identities=10% Similarity=-0.097 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHH
Q 012879 309 PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLL 387 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 387 (454)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++.....| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 46677888888899999999999999998875 234577888888899999999999999988776633 567888888
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 388 GACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.++...|++++|+..++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999998887
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=5.4e-06 Score=72.39 Aligned_cols=216 Identities=8% Similarity=-0.011 Sum_probs=150.6
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC----------hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcC--C
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC----------IFSASKLFEDISVERK-NLVSWTSIISGFAMHG--M 291 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~ 291 (454)
+|..+.+.+... .|.+..+|+.--.++...+. +++++.+++.+....| +..+|+.-.-.+...| .
T Consensus 48 eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 455555555554 34344444433333322222 6788999999888766 7888988887787877 4
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----------
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA---------- 360 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 360 (454)
+++++.+++++.+.... |...|+.-...+...|. ++++++.++.+.+. . +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999986533 66777666666667787 58999999999986 3 34666776665555554
Q ss_pred ----CChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC-----------CChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 361 ----GRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFH-----------GNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 361 ----g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+.++++++.+.+.... +-|...|+.+-..+.+. +.++++++.++++++..|++...+..++...
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4578888888887766 44677787666665554 4578999999999999998754444433322
Q ss_pred ---HhcCCcCcHHHHHHHHhhccc
Q 012879 425 ---AGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 425 ---~~~g~~~~a~~~~~~~~~~~~ 445 (454)
...|..+++...+.++.+.+.
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HhhcccccHHHHHHHHHHHHHhCc
Confidence 245777788889999887654
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=3.1e-07 Score=69.81 Aligned_cols=99 Identities=12% Similarity=-0.070 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLI 354 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (454)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+. . +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHH
Confidence 44555556666666666666666666655542 223455555556666666666666666666553 1 22345555566
Q ss_pred HHHHhcCChHHHHHHHhcCCCC
Q 012879 355 DMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666655443
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.3e-06 Score=80.95 Aligned_cols=118 Identities=7% Similarity=-0.151 Sum_probs=53.7
Q ss_pred cCCChHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CC-cHhHHHHHHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEEC---EVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE------IT-DVVVWRTLLGACS 391 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~ 391 (454)
..|+.+++..+++...... +..+ -..++..+...|...|++++|..+++++... .+ ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 3455555555555443320 1111 1234444555555555555555555443211 11 1234555555555
Q ss_pred cCCChhHHHHHHHHHHHhhcCCC-------CcHHHHHHHHHhcCCcCcHHHHHHHH
Q 012879 392 FHGNVEMGERVTRKILEMERGYG-------GDYVLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
..|++++|..++++++...+... ..+..++..+...|++++|...+.+.
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55666666555555554443311 12233444444555555555554444
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=5.6e-07 Score=69.28 Aligned_cols=110 Identities=12% Similarity=-0.078 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRT 385 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 385 (454)
...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|.+.+++.....| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 344445555555556666666655555532 333 34555555566666666666666665544422 4556666
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
+..++...|++++|...++++++..|.+...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 66777777777777777777777776665555544444
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=2.7e-06 Score=66.95 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
+...+..+...+.+.|++++|+..|++.....| +...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455566666666666666666666666666544 55566666666666666666666666666543 2245556666666
Q ss_pred HhcCCChHHHHHHHHHHHHh
Q 012879 321 CSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~ 340 (454)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66667777777666666654
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.9e-07 Score=70.16 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=91.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
.+...+..+...+...|++++|.+.|++.....|+ ...+..+..+|...|++++|+..++++++..|.+...+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888889999999999999999998887666 67888899999999999999999999999999998899999
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 421 YNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
+.++...|++++|...+++..+.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999887654
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=2.9e-06 Score=62.06 Aligned_cols=96 Identities=7% Similarity=-0.084 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|+++.|...+++..+. .|.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 3444455555555555555555555542 2223444444444444444444444444444443 22234444444444
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 012879 253 YAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (454)
+...|++++|.+.|++....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 44444444444444444443
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=2.5e-06 Score=63.84 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=41.4
Q ss_pred hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC--------hhhHHHHH
Q 012879 212 AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN--------LVSWTSII 283 (454)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~l~ 283 (454)
.+...+.+.|++++|...|+++.+. .|.+...+..+..+|...|++++|++.|++..+..|+ ..+|..+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3334444444444444444444443 2334444455555555555555555555444433111 11344444
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 012879 284 SGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.++...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555555555444
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=1.6e-06 Score=62.90 Aligned_cols=95 Identities=7% Similarity=-0.068 Sum_probs=47.2
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC---hhhHHHHHHH
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN---LVSWTSIISG 285 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~ 285 (454)
.+..+...+...|++++|...++++.+. .|.+...+..+..++...|++++|...|++..+..|+ ...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3344444444444444444444444443 2334445555555555555555555555555544332 4445555555
Q ss_pred HHhc-CChhHHHHHHHHHHhC
Q 012879 286 FAMH-GMGKEAVENFGRMQKV 305 (454)
Q Consensus 286 ~~~~-g~~~~A~~~~~~m~~~ 305 (454)
+... |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=1.5e-06 Score=65.12 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch-------HHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-------IRV 245 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 245 (454)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|+++.|...++.+.+.. |.+ ..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHHH
Confidence 3444555555566666666666655552 23334444555555555555555555555544431 111 344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCCCh
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNL 276 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (454)
+..+..++...|++++|.+.|++.....|+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 112 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCH
Confidence 4445555555555555555555554444443
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.49 E-value=1.2e-05 Score=76.74 Aligned_cols=173 Identities=8% Similarity=-0.042 Sum_probs=140.0
Q ss_pred CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 257 GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM----------GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
...++|++.++++....| +..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345678999999988877 55678777777766666 89999999999886544 6677777777777888
Q ss_pred --ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC--------
Q 012879 326 --LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG-RLEQAEKTALGIPSE-ITDVVVWRTLLGACSFH-------- 393 (454)
Q Consensus 326 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~-------- 393 (454)
+++++.+.++.+.+. . +-+...|+.-...+.+.| .++++++.++++.+. +-+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~-d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA-D-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh-c-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 669999999999986 2 346777877777788888 899999999999988 44677888777766552
Q ss_pred ------CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCc
Q 012879 394 ------GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432 (454)
Q Consensus 394 ------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (454)
+.++++++.+++++...|.+..+|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888666
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.48 E-value=3.9e-07 Score=68.37 Aligned_cols=111 Identities=9% Similarity=-0.076 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC----c----HhHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT----D----VVVWR 384 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~~~ 384 (454)
.+..+...+...|++++|...++...+. .+.+...+..+..+|...|++++|...++++....| + ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555556666666666665543 122344555555566666666666666655544311 1 55667
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.+..++...|++++|.+.++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777778888888888888888887766 44444445444433
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=3.3e-07 Score=85.78 Aligned_cols=119 Identities=11% Similarity=-0.021 Sum_probs=97.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCCh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 396 (454)
...+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|++.+++..+..| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788999999999998875 233477888899999999999999999998877734 577889999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCcHHHHHHH--HHhcCCcCcHHHHHH
Q 012879 397 EMGERVTRKILEMERGYGGDYVLMYNI--LAGVGRFGDAERLRR 438 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 438 (454)
++|++.++++++..|.+...+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999988888888887 888999999999988
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=1.8e-06 Score=64.02 Aligned_cols=93 Identities=11% Similarity=-0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|...+++..+. .|.+...+..+..+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 33444455555555555555555542 2223344444444444444444444444444443 2333444444444444
Q ss_pred hcCChhHHHHHHHHhhh
Q 012879 255 KCGCIFSASKLFEDISV 271 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~ 271 (454)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=8.1e-07 Score=82.73 Aligned_cols=94 Identities=10% Similarity=-0.042 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
...|..+..+|.+.|++++|+..++++... +.+...|..+..+|...|++++|+..|+++++..|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466777788888888888888888877766 3356778888888888888888888888888888888888888888888
Q ss_pred hcCCcCcHHH-HHHHH
Q 012879 426 GVGRFGDAER-LRRVM 440 (454)
Q Consensus 426 ~~g~~~~a~~-~~~~~ 440 (454)
+.|+++++.+ .++.|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877664 34444
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=3.1e-07 Score=68.97 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI---KHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLL 387 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 387 (454)
..+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...|+++....|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3455667788999999999998887521 222 46777888888899999999888887665443 56677788
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
.++...|++++|+..++++++..|.++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 8888899999999999999888776654433
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.43 E-value=3.1e-07 Score=70.28 Aligned_cols=106 Identities=18% Similarity=0.085 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-----D-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE----- 376 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 376 (454)
..+......+.+.|++++|+..|+...+...-.| + ...|..+..++.+.|++++|+..+++....
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3455566667778888888888888876522111 1 114555555555555555555555444433
Q ss_pred --CCc-HhHH----HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 377 --ITD-VVVW----RTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 377 --~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
.|+ ...| .....++...|++++|+..|+++++..|.+....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 342 2344 4555555555555555555555555555544443
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=4.9e-07 Score=80.54 Aligned_cols=151 Identities=7% Similarity=-0.116 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 345666666777778888888888877664 344331 12223333322111 1125667777
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH-HHhcCCcCcH
Q 012879 356 MLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI-LAGVGRFGDA 433 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 433 (454)
+|.+.|++++|+..+++.....| +...|..+..+|...|++++|+..|+++++..|.+...+..+..+ ....+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877766533 567777788888888888888888888888888777777777666 3345666777
Q ss_pred HHHHHHHhhcccc
Q 012879 434 ERLRRVMDERNAF 446 (454)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (454)
...+++|......
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 7777777665443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=8.3e-07 Score=69.37 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------CCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.++..+...+...|++++|.+.++++++..+.. ...+..++.++...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555566666666666666666666553321 22455566666666777777666666554
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=1.4e-05 Score=59.63 Aligned_cols=98 Identities=8% Similarity=-0.051 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh---hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch---HHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE---ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD---IRVLN 247 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 247 (454)
+..+...+...|++++|...|++..+. .+.+. ..+..+..++...|++++|...++.+.+. .|.+ +..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 344556666777777777777776653 12222 35555566666666666666666666654 2323 45555
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
.+..++...|++++|...|+++....|+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 6666666666666666666666555443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=1.5e-07 Score=69.38 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=68.1
Q ss_pred cCCChHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHH
Q 012879 323 HGGLVEEGLNFFDKMVEECE--VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 399 (454)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.|++.....| +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357888888888888763 2 123456777888888888888888888888776634 567778888888888888888
Q ss_pred HHHHHHHHHhhcCCCCc
Q 012879 400 ERVTRKILEMERGYGGD 416 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ 416 (454)
++.++++++..|.++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 88888888888876544
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.34 E-value=2.8e-07 Score=67.99 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=49.9
Q ss_pred cCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 289 HGMGKEAVENFGRMQKVGL--KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.|++++|+..|++..+.+. +.+...+..+..++...|++++|...|++..+. .+.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4566667777776666431 223345556666666677777777777766654 122355666666666677777777
Q ss_pred HHHHhcCCCC
Q 012879 367 EKTALGIPSE 376 (454)
Q Consensus 367 ~~~~~~~~~~ 376 (454)
.+.+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7766665544
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.34 E-value=9.3e-07 Score=69.44 Aligned_cols=81 Identities=15% Similarity=0.017 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC-CcHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 423 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~ 423 (454)
+...|..+..+|.+.|++++|+..+++.... +.+...|..+..+|...|++++|+..|+++++..|.+. .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467778888888999999999988887766 34577888899999999999999999999999998876 444444444
Q ss_pred HHh
Q 012879 424 LAG 426 (454)
Q Consensus 424 ~~~ 426 (454)
..+
T Consensus 142 ~~~ 144 (162)
T 3rkv_A 142 TER 144 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=1.7e-06 Score=67.54 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcC---CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-c
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVER---KNL----VSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP-N 310 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 310 (454)
..++..+...+...|++++|...+++..... ++. .++..+...+...|++++|...+++..+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4456667777777777777777777665531 111 24455555556666666666666554431 1000 0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
...+..+...+...|++++|...+++..+...-..+. .....++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-----------------------------IGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-----------------------------HhHHHHHHHHHHHH
Confidence 2233344444445555555555554443320000000 01133556666777
Q ss_pred HcCCChhHHHHHHHHHHHhhc
Q 012879 391 SFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~ 411 (454)
...|++++|.+.++++++...
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 777777777777777766543
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=1.1e-05 Score=75.40 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=56.3
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 330 (454)
.+.+.|++++|.+.|++..+..| +...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555555555444 34455555555555555555555555555542 12344555555555555666666
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHh
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDM--LGRAGRLEQAEKTAL 371 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 371 (454)
.+.|+++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666655554311 122233333333 555566666666655
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.32 E-value=1.6e-06 Score=78.17 Aligned_cols=91 Identities=7% Similarity=-0.108 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+...|..+..+|.+.|++++|++.++++....| +...|..+..+|...|++++|++.++++++..|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356788889999999999999999999888744 5788999999999999999999999999999999888888999999
Q ss_pred HhcCCcCcHHHH
Q 012879 425 AGVGRFGDAERL 436 (454)
Q Consensus 425 ~~~g~~~~a~~~ 436 (454)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.9e-07 Score=67.92 Aligned_cols=95 Identities=9% Similarity=-0.089 Sum_probs=73.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------CCcHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYV 418 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 418 (454)
+...+..+...+...|++++|.+.|++..... .+...+..+..++...|++++|++.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 44566677777788888888888887776653 356778888888889999999999999999888887 56677
Q ss_pred HHHHHHHhcCCcCcHHHHHHHH
Q 012879 419 LMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
.++.++...|+++.|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 7888888888888887666544
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=5.8e-06 Score=73.58 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 321 (454)
....+..+...+.+.|++++|...|++.....|+... +...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 5567888899999999999999999998886665432 222333344333221 13677788889
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHH-HHcCCChhHH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGA-CSFHGNVEMG 399 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A 399 (454)
.+.|++++|+..++...+. .+.+...+..+..+|...|++++|...|+++....|+ ...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 2346788889999999999999999999999887554 4455555554 2345677888
Q ss_pred HHHHHHHHHhhcCCC
Q 012879 400 ERVTRKILEMERGYG 414 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~ 414 (454)
...|+++....|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999998887754
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=5.9e-06 Score=63.20 Aligned_cols=98 Identities=14% Similarity=-0.036 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-------------HhHHHHHHHHHHcCCChhHHHHHHHHHHHh----
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-------------VVVWRTLLGACSFHGNVEMGERVTRKILEM---- 409 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 409 (454)
...+......+.+.|++++|++.|++.....|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345566777788899999999999887766333 228888889999999999999999999999
Q ss_pred ---hcCCCCcH----HHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 410 ---ERGYGGDY----VLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 410 ---~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+|++...| ...+.++...|++++|+..|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888 899999999999999999999887753
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1.7e-05 Score=73.74 Aligned_cols=121 Identities=11% Similarity=-0.091 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC-------------hhhHHhHHHHHHccCchhHHHHHHHhhhhcC
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS-------------EITILAVLPAIWQNGDVKSCQLIHGYGEKRG 237 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 237 (454)
...+..+...+.+.|++++|+..|++..+.....++ ...|..+..++.+.|+++.|...++++.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 346777888899999999999999998874111111 234444444444444444444444444443
Q ss_pred CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh
Q 012879 238 FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 293 (454)
.|.+...+..+..+|...|++++|+..|+++.+..| +...+..+..++.+.++.+
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444444444444444433 2233444444444444333
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=1.6e-05 Score=62.25 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=61.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcc-----CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACE-----YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL 246 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (454)
..+......+.+.|++++|+..|.+..... ...|+...+ .. ..|.+..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~~~~ 66 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE-----LDRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH-----HHHTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH-----HHHHHHHHH
Confidence 345667777888888888888888776530 001111000 00 012244555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
..+..+|.+.|++++|+..+++.....| +...|..+..+|...|++++|...|++..+.
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5566666666666666666666555544 4455555666666666666666666665553
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=2.4e-05 Score=72.77 Aligned_cols=136 Identities=5% Similarity=-0.123 Sum_probs=99.2
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC-hhhHHHHHHHHhccCCcchHhHHHHHHHHc-----CC-CCC-ch
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD-SFTYSFLIRTCATLSHPNLGTQLHAVISKV-----GF-QSH-VY 110 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~ 110 (454)
..+..+|++++|+.++++...+.+.-.. |.+++ ..+++.|..+|...|++++|..++++.++. |. .|+ ..
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFA--DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3466889999999999998866555444 43333 378999999999999999999999987752 21 122 35
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc----chHHHHHHHHHhcCC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNR 186 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 186 (454)
+++.|...|...|++++|+.+++ +|+++++....++. .+.+.+..++...+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999988775 45666666554432 234556667777788
Q ss_pred hHHHHHHHHHHHHc
Q 012879 187 SNEALALFRKMVAC 200 (454)
Q Consensus 187 ~~~a~~~~~~~~~~ 200 (454)
+++|..+|..+++.
T Consensus 451 ~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 451 FRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887653
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=3.9e-06 Score=78.05 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=76.1
Q ss_pred HhcCCChHHHHHHHHHHHHhcC--CC---C-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CCc-HhHHHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECE--VL---P-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------ITD-VVVWRT 385 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~ 385 (454)
+...|++++|..++++..+... +. | ...+++.|..+|...|++++|+.++++.... .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456667777666666554311 11 1 2345666667777777777776666554332 333 356777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHh-----hcCCCC---cHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEM-----ERGYGG---DYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
|...|...|++++|+.+++++++. |++++. ....+..++...|++++|+.++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777653 344332 23456666677777777887777777644
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=5e-05 Score=68.33 Aligned_cols=63 Identities=10% Similarity=-0.058 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+..++..+..+|.+.|++++|++.+++..+..| +...+..+..+|...|++++|+..|++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555555555555555555555555433 344455555555555555555555555544
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=7.6e-06 Score=56.74 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
...+..+...+...|++++|...+++..... .+...+..+..++...|++++|+..++++++..|.+...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456666777777788888877777765552 356677788888888899999999999999888888878888887776
Q ss_pred hcC
Q 012879 426 GVG 428 (454)
Q Consensus 426 ~~g 428 (454)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=6.9e-06 Score=59.44 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=75.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
++...|..+...+.+.|++++|++.|++.. ...+. +...+..+..++...|++++|...++..++.. +.+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLI---TAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCc
Confidence 456778888889999999999999999988 55554 77888888999999999999999999988754 222
Q ss_pred ------chhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 109 ------VYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 109 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
...+..+..++...|+.+.|...++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4455666667777777777666665543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=5.2e-06 Score=60.76 Aligned_cols=83 Identities=10% Similarity=-0.034 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
.|...|+...+. .+.+...+..+...|...|++++|+..|++.....| +...|..+..+|...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567777777753 234577788888889999999999999988776633 56788888888999999999999999998
Q ss_pred HhhcCC
Q 012879 408 EMERGY 413 (454)
Q Consensus 408 ~~~~~~ 413 (454)
+..|..
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887763
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.02 E-value=1.5e-05 Score=56.61 Aligned_cols=67 Identities=10% Similarity=-0.114 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+...+..+..+|...|++++|++.|++.....| +...|..+..+|...|++++|++.++++++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 345555566666666666666666666555422 3445666666666666666666666666665544
No 201
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.92 E-value=4.1e-07 Score=81.10 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=171.4
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
..+.+|..|..+....+...+|++.|-+.. |...|..++.++.+.|++++-.+++...++.. .+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke 115 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE 115 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cc
Confidence 456788899999999999998888775553 66778899999999999999999988777653 34
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-------------------- 168 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------------------- 168 (454)
+.+=+.|+-+|++.+++.+-.+++. .|+......+..-|...|.++.|.-+|..+..
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4555678999999998765443322 37777777788888888888888888877641
Q ss_pred ----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 169 ----RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 169 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
.++.||..+-.+|...+++.-|.-.--.++-. | .....++..|...|.+++.+.+++..... ......
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh----a--deL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmG 264 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH----A--DELEELINYYQDRGYFEELITMLEAALGL--ERAHMG 264 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHH
Confidence 47789999999999998888776554444322 2 22345666777888888888888877643 444778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc--CC-------ChhhHHHHHHHHHhcCChhHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE--RK-------NLVSWTSIISGFAMHGMGKEAVE 297 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-------~~~~~~~l~~~~~~~g~~~~A~~ 297 (454)
+|+.|.-.|++- +.++..+.++-.-.. -| ....|.-++-.|.+-.+++.|..
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 888888888765 445555544433222 12 33457777777777777776643
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.81 E-value=0.00092 Score=63.68 Aligned_cols=172 Identities=9% Similarity=-0.053 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc----------hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD----------VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
.++|++.++++... .+-+...|+.--..+...|+ ++++.+.++.+.+. .|.+..+|..-..++.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 45667777777763 23334555555555555555 67777777777776 455777777777777777
Q ss_pred C--ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC--------
Q 012879 257 G--CIFSASKLFEDISVERK-NLVSWTSIISGFAMHG-MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG-------- 324 (454)
Q Consensus 257 g--~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 324 (454)
| +++++++.++++.+..| +..+|+.-.-.+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7 56888888888877755 6677777777777777 777888888777776433 555555544444331
Q ss_pred ------CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 325 ------GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 325 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
+.++++.+.++.+... .+-+...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 4578888999888864 23356777777777777777444
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00042 Score=52.35 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChh
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIF 260 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 260 (454)
+++++|+.+|++..+. + .|+.. +...|...+.+++|.+.|++..+.| ++..+..|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHH
Confidence 3566777777777665 3 23222 5555555566666777777776654 55666666666666 66777
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 012879 261 SASKLFEDISVERKNLVSWTSIISGFAM----HGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 306 (454)
+|.+.|++..+. .++..+..|...|.. .++.++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776653 455566666666666 566777777777666655
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.79 E-value=0.00018 Score=52.30 Aligned_cols=79 Identities=9% Similarity=-0.092 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+|+..|++..+ ..+.+...+..+...+...|++++|...+++..+. .|.+...+..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555554 22334455555555666666666666666666554 333555566666666666666666666665
Q ss_pred hhh
Q 012879 269 ISV 271 (454)
Q Consensus 269 ~~~ 271 (454)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=4.1e-05 Score=54.24 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=42.8
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+...+..+...|...|++++|+..|+++++..|.++..|..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666666666667777777777777666666666666666667667777666666666554
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=9.4e-05 Score=56.43 Aligned_cols=96 Identities=6% Similarity=-0.031 Sum_probs=60.5
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCch----------hHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDV----------KSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
+.+++++|+..+++..+. .+.+...|..+..++...+++ ++|+..|++..+. .|....+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 445667777777777663 344566666666666666553 4677777777765 45566677777777
Q ss_pred HHhcC-----------ChhHHHHHHHHhhhcCCChhhHHHH
Q 012879 253 YAKCG-----------CIFSASKLFEDISVERKNLVSWTSI 282 (454)
Q Consensus 253 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~l 282 (454)
|...| ++++|++.|++..+..|+...|...
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 76653 6677777777766666655444333
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0005 Score=51.90 Aligned_cols=111 Identities=11% Similarity=-0.071 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQA 366 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 366 (454)
++++|.+.|++..+.|. |... +...|...+..++|.++|+...+. + +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 56677777777776652 2222 455555666667777777777664 2 45556666666666 6677777
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMER 411 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 411 (454)
.++|++..+. .++..+..|...|.. .++.++|++.++++.+.+.
T Consensus 81 ~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766554 455566666666666 6777777777777776543
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00022 Score=49.00 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.+...|..+...+.+.|++++|+..|++.. ...+. +...+..+..++...|++++|...+++..+.. +.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 356678888888999999999999999887 55544 67788888888999999999999999888765 345
Q ss_pred chhHHHHHHHHHhC
Q 012879 109 VYVNTALVNMYVSL 122 (454)
Q Consensus 109 ~~~~~~l~~~~~~~ 122 (454)
...+..+..++...
T Consensus 77 ~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 77 AEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666665543
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.62 E-value=0.00017 Score=50.04 Aligned_cols=68 Identities=12% Similarity=-0.024 Sum_probs=43.3
Q ss_pred cHhHHHHHHHHHHcCCC---hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 379 DVVVWRTLLGACSFHGN---VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+..++++.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555555555543333 566777777777777766666666777777777777777777776665544
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.0002 Score=54.66 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=71.2
Q ss_pred HccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh----------hHHHHHHHHhhhcCC-ChhhHHHHHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI----------FSASKLFEDISVERK-NLVSWTSIISGF 286 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 286 (454)
.+.+.+++|.+.++...+. .|.+...+..+..++...+++ ++|+..|++..+..| +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3456678888888888887 566888888888888887765 488888888888766 556788888888
Q ss_pred HhcC-----------ChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 287 AMHG-----------MGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 287 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 7664 677777777777664 455554444443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=4.3e-05 Score=53.88 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=45.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHh-HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVV-VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
....+.+.|++++|.+.++++....| +.. .+..+..+|...|++++|++.|+++++..|.+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34456667777777777777665533 445 677777777778888888888888888777766555
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.44 E-value=0.012 Score=51.65 Aligned_cols=141 Identities=10% Similarity=-0.020 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHH--hcCC---hHHHHHHHHHHHHccCCCCC-hhhHHhHHHHHHc---cC-----chhHHHHHHHhhh
Q 012879 169 RNVVSWTGIIDGYT--RMNR---SNEALALFRKMVACEYTEPS-EITILAVLPAIWQ---NG-----DVKSCQLIHGYGE 234 (454)
Q Consensus 169 ~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~ 234 (454)
.+...|...+++.. ..++ ..+|..+|++..+. .|+ ...+..+.-++.. .+ ........++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 46677777776543 3333 46788888888874 344 3445444444321 00 0011111111111
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 235 KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
.....|.++.++..+...+...|++++|...++++....|+...|..+...+.-.|++++|.+.+++.... .|...||
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 11223445555655555555556666666666666665555555555555556666666666666665553 3444444
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.42 E-value=0.00011 Score=66.02 Aligned_cols=349 Identities=10% Similarity=0.044 Sum_probs=217.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.|+..|..++.+..+.|.+++-+..+...+ +. .+ +...=+.|+-+|++.++..+-.+.+. .||
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaR---k~-~k------e~~IDteLi~ayAk~~rL~elEefl~-------~~N 143 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMAR---KK-AR------ESYVETELIFALAKTNRLAELEEFIN-------GPN 143 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS---TT-CC------STTTTHHHHHHHHTSCSSSTTTSTTS-------CCS
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHH---HH-hc------ccccHHHHHHHHHhhCcHHHHHHHHc-------CCC
Confidence 678899999999999999999999988875 33 33 55566789999999998877666542 477
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC------------------------CCchhHHHHHHHHHhcCCHHHHHHHHh
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE------------------------RNLVTWNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
..-...+.+-|...|.++.|.-+|..+.. .++.||-.+-.+|...+.+.-|.-.--
T Consensus 144 ~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGL 223 (624)
T 3lvg_A 144 NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 223 (624)
T ss_dssp SSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHH
T ss_pred cccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcc
Confidence 77777888999999999999999888752 477899999999999998876643321
Q ss_pred h-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc--
Q 012879 165 E-MPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF-- 241 (454)
Q Consensus 165 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 241 (454)
. +..++ -...++..|-..|.+++-+.+++.... .-......|+.|.-.|++- ++++..+.++....+-..|.
T Consensus 224 niIvhad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 224 HIVVHAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred hhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 1 22222 122356678889999999999998874 3456677788887777665 45555555554433211221
Q ss_pred ----hHHHHHHHHHHHHhcCChhHHHHHH-------------HHhhhcCCChhhHHHHHHHHHh---------------c
Q 012879 242 ----DIRVLNCLIDTYAKCGCIFSASKLF-------------EDISVERKNLVSWTSIISGFAM---------------H 289 (454)
Q Consensus 242 ----~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~~l~~~~~~---------------~ 289 (454)
....|..++..|..-..++.|.... .++...-.|...|-..|..|.. .
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~pr 378 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 378 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTT
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhcccc
Confidence 3446788888888888888665432 1222212355555444444443 2
Q ss_pred CChhHHHHHHHHHHhC--------CC-CCcHHHH-HHHHHHHhcCCChHHH------------HHHHHHHHHhcCCCCCh
Q 012879 290 GMGKEAVENFGRMQKV--------GL-KPNRVTF-LSVLNACSHGGLVEEG------------LNFFDKMVEECEVLPDI 347 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~--------~~-~p~~~~~-~~l~~~~~~~~~~~~a------------~~~~~~~~~~~~~~~~~ 347 (454)
=+...+.++|++.-.. .+ .-|.... .++-..|....|++.- ..+-+++.+. +-.
T Consensus 379 lDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~ 454 (624)
T 3lvg_A 379 LDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELI 454 (624)
T ss_dssp CCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSH
T ss_pred CChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chH
Confidence 3444445444432110 00 1122222 2333445555554432 2233333321 223
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
..-..-...|.+.++++++..+.++=. .|.-.|...+.+|+.+-|.++++-.++.+
T Consensus 455 eFRrIAA~LYkkn~rw~qsi~l~KkDk-------lykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 455 EFRRIAAYLFKGNNRWKQSVELCKKDS-------LYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HHHHHHHHHHHTTCHHHHHSSCSSTTC-------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcc-------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 333444566778888888877654321 23334555566777777777777776643
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.0071 Score=53.12 Aligned_cols=135 Identities=5% Similarity=-0.052 Sum_probs=71.3
Q ss_pred CCCCChhhHHhHHHHHH--ccC---chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc---C-C----hhHHHHHHHH
Q 012879 202 YTEPSEITILAVLPAIW--QNG---DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC---G-C----IFSASKLFED 268 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~----~~~a~~~~~~ 268 (454)
..+.+...|...+++.. ..+ +..+|..+|+++.+. .|.....+..+..+|.-. + . .......+..
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34566667776666543 222 346788888888876 565566666555554310 0 0 0000111111
Q ss_pred ---hhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 269 ---ISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 269 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+.....+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11112355555555555555566666666666666553 45555555555555666666666666666543
No 215
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.32 E-value=0.054 Score=51.72 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhCC-CCCcHH--HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 290 GMGKEAVENFGRMQKVG-LKPNRV--TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.+.+.|...+....+.. ..+... ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886533 322222 2223333444555356677777765443 23433444455555678999999
Q ss_pred HHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 367 EKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 367 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
...|+.|.....+ ..-.-=+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999876222 22222345577789999999999999874
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.00083 Score=61.36 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=71.2
Q ss_pred HccCChHHHHHHHHHHHHHhcCCCCCCCCCCCh-hhHHHHHHHHhccCCcchHhHHHHHHHHc-----C-CCCC-chhHH
Q 012879 42 SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDS-FTYSFLIRTCATLSHPNLGTQLHAVISKV-----G-FQSH-VYVNT 113 (454)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 113 (454)
...|++++|+.++++...+.+.-.. |.+++. .+++.|..+|...|++++|..++++.++. | -.|+ ..+++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFE--DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccC--hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3468899999999998865455444 433343 78999999999999999999999998762 2 1233 34788
Q ss_pred HHHHHHHhCCChhHHHHHHhhC
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~ 135 (454)
.|...|...|++++|+.++++.
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHH
Confidence 8999999999999999888654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.19 E-value=0.00043 Score=48.56 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=55.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCC-cHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGG-DYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
....+...|++++|++.++++++..|.+.. .+..++.++...|++++|.+.+++..+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 456778899999999999999999999988 9999999999999999999999999887654
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.18 E-value=0.00059 Score=62.33 Aligned_cols=87 Identities=16% Similarity=0.047 Sum_probs=62.2
Q ss_pred cCCChHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CCc-HhHHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEEC--EVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------ITD-VVVWRTLL 387 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~ 387 (454)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4567788888887766531 11222 456777888888888888888777765443 444 35788888
Q ss_pred HHHHcCCChhHHHHHHHHHHHh
Q 012879 388 GACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..|...|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8999999999999999888764
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.12 E-value=0.062 Score=53.79 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHhccCCcchHhH-HHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHH
Q 012879 82 RTCATLSHPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 82 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
......+++++|.+ ++.. ++ +......++..+.+.|..+.|.++.+.- ..-.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHH
Confidence 33445677777765 4311 11 1222367777888888888888766421 12234567789999999
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 161 SLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 9887774 567889999999999999999999988754 33444455556666665555555554431
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
++....+|.+.|++++|.+++.++.
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2233344555666666666655443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.013 Score=58.74 Aligned_cols=125 Identities=14% Similarity=-0.023 Sum_probs=74.9
Q ss_pred HHHHhcCCHHHHHH-HHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 148 TGLVKWGELEFARS-LFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 148 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.-.. -.......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHHH
Confidence 34455677777777 554443 112226666777777777777765532211 12334566777777
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.
T Consensus 672 ~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 672 RDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 7775432 2567788888888888888888888877655 44444444445555544444333
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.0021 Score=58.80 Aligned_cols=98 Identities=4% Similarity=-0.068 Sum_probs=72.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCC-ChhhHHHHHHHHhccCCcchHhHHHHHHHHc-----C-CCCC
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLF-DSFTYSFLIRTCATLSHPNLGTQLHAVISKV-----G-FQSH 108 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~ 108 (454)
..+..+.+.|++++|+..+++...+.+.-.. |.++ ...+++.+..+|...|++++|..+++++++. | ..|+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg--~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLP--DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC--TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCC--ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 4456677889999999999999843233233 3222 2367899999999999999999999987752 2 1122
Q ss_pred -chhHHHHHHHHHhCCChhHHHHHHhhC
Q 012879 109 -VYVNTALVNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 109 -~~~~~~l~~~~~~~g~~~~a~~~~~~~ 135 (454)
..+++.|...|...|++++|+.++++.
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346888999999999999999888654
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.96 E-value=0.00061 Score=62.32 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=63.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CCc-HhH
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEEC--EVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------ITD-VVV 382 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~ 382 (454)
+..+...|++++|..++++..+.. -+.|+ ..+++.+..+|...|++++|+.+++++... .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556778888888887776531 11222 456677777788888888887777765433 333 356
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
++.|...|...|++++|+.+++++++.-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888877743
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.014 Score=40.17 Aligned_cols=64 Identities=14% Similarity=-0.022 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 242 DIRVLNCLIDTYAKCGC---IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
++..+..+..++...++ .++|..+|++.....| ++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555554443332 4555555555555544 3444444555555555555555555555553
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.1 Score=40.36 Aligned_cols=44 Identities=14% Similarity=0.352 Sum_probs=19.6
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 012879 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444333 23334444444444444444444444443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.77 E-value=0.0033 Score=44.56 Aligned_cols=69 Identities=17% Similarity=0.018 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC--------CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 351 GCLIDMLGRAGRLEQAEKTALGIPSE--------ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
-.|...+.+.|++..|..+|+.+... .+...++..+..++.+.|++++|+..++++++..|.+..+...
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 34444455555555555544443322 1345678888888999999999999999999888887655433
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.73 E-value=0.045 Score=39.74 Aligned_cols=140 Identities=15% Similarity=0.063 Sum_probs=68.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3356666666666665553 133444444433333334444444444443221111 12233333
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
...+-.+-. +....+..++.+..+|+-+.-.++...++...+.+++....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 222222221 23334444555566666666666666654444445555666666666666666666666666666553
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.005 Score=46.42 Aligned_cols=90 Identities=9% Similarity=-0.164 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCCCC-C--cHhHHHHHHHHHHcCCChhHHH
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG---RLEQAEKTALGIPSEI-T--DVVVWRTLLGACSFHGNVEMGE 400 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 400 (454)
...+.+.|.+..+. +. ++..+...+..++++.+ +.++++.++++..... | ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555555443 22 45556566666666666 4446666666655553 4 2445566777888999999999
Q ss_pred HHHHHHHHhhcCCCCcHH
Q 012879 401 RVTRKILEMERGYGGDYV 418 (454)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (454)
+.++.+++..|.+..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999998887765433
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.57 E-value=0.0031 Score=53.09 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHhcCCCCCCc--HhHHHHHHHHHHc-CCC
Q 012879 327 VEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRA-----GRLEQAEKTALGIPSEITD--VVVWRTLLGACSF-HGN 395 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g~ 395 (454)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.....|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34555666666543 454 45667777777773 7777777777777766552 5666666666666 377
Q ss_pred hhHHHHHHHHHHHhhcC
Q 012879 396 VEMGERVTRKILEMERG 412 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~ 412 (454)
.++|.+.++++++..|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777777666
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.45 E-value=0.63 Score=46.36 Aligned_cols=255 Identities=6% Similarity=-0.101 Sum_probs=143.5
Q ss_pred HHhcCCHHHHHHHHhhCCCC----Cc--chHHHHHHHHHhcCChHHHHHHHHHHHHccCC------CCChhhHHhHHHHH
Q 012879 150 LVKWGELEFARSLFEEMPCR----NV--VSWTGIIDGYTRMNRSNEALALFRKMVACEYT------EPSEITILAVLPAI 217 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 217 (454)
.+..|+.++++.+++..... +. ..-..+.-+....|..+++..++......... .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45667777888888776641 11 12223344556667667788888877664110 01112222232333
Q ss_pred HccCc-hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHH
Q 012879 218 WQNGD-VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 218 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 295 (454)
.-.|. -+++.+.+..+............-.+|...+...|+-+....++..+.+...+ +.-+..+.-++...|+.+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 33332 23444555554443211001123334555666778888888888877664332 22233333455578999999
Q ss_pred HHHHHHHHhCCCCCcHHHHH--HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 296 VENFGRMQKVGLKPNRVTFL--SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
..+++.+.... .|....-. .+.-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.++++.+
T Consensus 544 ~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 544 DDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 99998887641 23222222 3345678889988888899988763 2333443344444555678877777777766
Q ss_pred CCC-CCcHhHHHHHHHHHHcCCCh-hHHHHHHHHHH
Q 012879 374 PSE-ITDVVVWRTLLGACSFHGNV-EMGERVTRKIL 407 (454)
Q Consensus 374 ~~~-~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 407 (454)
... .|.+..-..+.-+....|+. .+++..+..+.
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 554 44444444445555555554 57788888775
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.29 E-value=0.042 Score=38.69 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
...++..|..+|.+.|+++.|...++++....|+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4556666666666667777777666666665553
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.28 E-value=0.085 Score=39.72 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC---chhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHhcCChhHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNG---DVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 262 (454)
...+.+.|.+..+. + +++..+...+..++.+++ +.+++..+++.+.+.. .| .....+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 44556666666553 3 377788888888888877 6668888888888874 13 2455666777788889999999
Q ss_pred HHHHHHhhhcCCC
Q 012879 263 SKLFEDISVERKN 275 (454)
Q Consensus 263 ~~~~~~~~~~~~~ 275 (454)
.+.++.+.+..|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999988887774
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.22 Score=36.25 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=79.3
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
.-.|..++..++..+...+ .+..-|+.++--....-+-+-..+.++.+-+. . | ...+|++..
T Consensus 18 ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--F--D----------is~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--F--D----------LDKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--S--C----------GGGCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh--c--C----------cHhhhcHHH
Confidence 3446666666666655553 33444444444444444444444444333322 0 1 122444444
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 262 ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
....+-.+- .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.+.
T Consensus 80 Vi~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k- 154 (172)
T 1wy6_A 80 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK- 154 (172)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence 444443332 3445556667777777888877777777544 24667777777788888888888888888877776
Q ss_pred CCC
Q 012879 342 EVL 344 (454)
Q Consensus 342 ~~~ 344 (454)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 653
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.13 E-value=0.17 Score=37.71 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCcchHHHHHHHHHhcCCh------HHHHHHHHHHHHccCCCCC
Q 012879 169 RNVVSWTGIIDGYTRMNRS------NEALALFRKMVACEYTEPS 206 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~ 206 (454)
.|..+|-..+...-+.|++ ++..++|++... .++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCcc
Confidence 4556666666666666777 677777777766 45554
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.22 Score=38.48 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=51.8
Q ss_pred HccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 297 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 297 (454)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|...|+.++-.+
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHH
Confidence 3456666666555443 1455666666666666666666666666554 4444445555555555544
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
+-+.....| -++....++...|+++++.+++.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433332 122233334445666666665543
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.02 E-value=1.4 Score=43.94 Aligned_cols=304 Identities=9% Similarity=0.003 Sum_probs=165.7
Q ss_pred HHHhCCChhHHHHHHhhCCCC----Cchh--HHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------cchHHHHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPER----NLVT--WNVMITGLVKWGELEFARSLFEEMPC-RN----------VVSWTGIIDG 180 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~ 180 (454)
+....|+.++++.+++..... +..+ =..+.-+.+..|..+++..++..... ++ ...-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456788889999999887641 2222 12233445566666667776655432 22 1112233334
Q ss_pred HHhcCC-hHHHHHHHHHHHHccCCCCChhhHH--hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 181 YTRMNR-SNEALALFRKMVACEYTEPSEITIL--AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 181 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
++-.|. -+++.+.+..+... . .+...... .+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~d-d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYN-D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHT-C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhc-C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC
Confidence 444443 34667777777653 1 11111122 33334556788888888888777642 212233333444455779
Q ss_pred ChhHHHHHHHHhhhcCCChhhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHH
Q 012879 258 CIFSASKLFEDISVERKNLVSWT---SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFF 334 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 334 (454)
+.+.+..+++.+........-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999888876432233343 23456777889888888999988752 223333333334555567777777777
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhcCCCCCCcHhHHHHHHHH--HHcCCChh----HHHHHHHHHH
Q 012879 335 DKMVEECEVLPDIKHYGCLIDMLGRAGRL-EQAEKTALGIPSEITDVVVWRTLLGA--CSFHGNVE----MGERVTRKIL 407 (454)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~----~A~~~~~~~~ 407 (454)
+.+.+. ..|.+..-..+.-+....|.. .+|...+..+... +|..+-..-+.+ ....|..+ +...+.+.+.
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 766553 345555445555555556554 5788888887765 444443333333 33344332 3444444443
Q ss_pred Hhhc---CCC--CcHHHHHHHHHhcCC
Q 012879 408 EMER---GYG--GDYVLMYNILAGVGR 429 (454)
Q Consensus 408 ~~~~---~~~--~~~~~l~~~~~~~g~ 429 (454)
..-. .++ ..-..++.+....|.
T Consensus 695 ~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 3322 122 222345555665554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.99 E-value=0.057 Score=39.06 Aligned_cols=91 Identities=9% Similarity=-0.199 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHhcCCCCC-C--cHhHHHHHHHHHHcCCChhHH
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ---AEKTALGIPSEI-T--DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A 399 (454)
....+.+.|...... +. ++..+--.+..++++..+... ++.+++++.... | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555566655554 33 566666667777777776665 778888777763 4 233455677789999999999
Q ss_pred HHHHHHHHHhhcCCCCcHH
Q 012879 400 ERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (454)
.+.++.+++..|.+..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999998765543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.47 E-value=0.16 Score=36.77 Aligned_cols=90 Identities=9% Similarity=-0.127 Sum_probs=53.9
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH---HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChh
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS---CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
......+.+.|.+.... + .++..+-..+..++.++.+... ++.+++.+.+.+.+.........|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33444555555555443 2 3666666666677766665554 66777776665311123344455666777777777
Q ss_pred HHHHHHHHhhhcCCC
Q 012879 261 SASKLFEDISVERKN 275 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~ 275 (454)
+|.+.++.+.+..|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 777777777776663
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.47 E-value=1.9 Score=41.26 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHH----HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVL----PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
+++.|...+....+. . ..+......+- ......+...++...+....... . +.....-.+....+.|+++.
T Consensus 229 d~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 DAENARLMIPSLAQA-Q-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q-STSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp CHHHHHHHHHHHHHH-T-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C-CHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHhhhhc-c-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C-ChHHHHHHHHHHHHCCCHHH
Confidence 667777777766553 2 22322222222 22233332333444444333321 1 33333344444456677777
Q ss_pred HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 262 ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 262 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
|.+.|+.|..... .....--+..++...|+.++|..+|..+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777777765322 233344455566667777777777777654
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.65 Score=42.56 Aligned_cols=15 Identities=7% Similarity=0.251 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHh
Q 012879 326 LVEEGLNFFDKMVEE 340 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~ 340 (454)
..++++.....|...
T Consensus 372 ~~~evE~~ls~mI~~ 386 (445)
T 4b4t_P 372 TESQTETYISDLVNQ 386 (445)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC
Confidence 567888888888877
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.35 E-value=0.14 Score=43.25 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=73.4
Q ss_pred chhHHHHHHHHhhhhhhhhhhhHHHHHHHHHc-----cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 12 NITTQIHSHLLTTNSLLHHSQLFNTLLHFYSL-----AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++...++..+..+-..+...|..+...|.+ .|+.++|.+.|++.. ..++. - +..++......++.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~--~---~id~~v~YA~~l~~ 251 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSA--H---DPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCT--T---CSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCC--C---CchHHHHHHHHHHH
Confidence 34555566666666544568899999999999 599999999999999 55543 2 46677888888888
Q ss_pred c-CCcchHhHHHHHHHHcCCC--CCchhHHHHH
Q 012879 87 L-SHPNLGTQLHAVISKVGFQ--SHVYVNTALV 116 (454)
Q Consensus 87 ~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 116 (454)
. |+.+.+.+.+++.+..... |+....+.+.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 4 9999999999999997766 6655555443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.32 E-value=0.039 Score=41.03 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=77.6
Q ss_pred CcHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCCCCChh-HHHHHHH------HHHhcCChHHHHHHHhcCCC
Q 012879 309 PNRVTFLSVLNACSHGGLV------EEGLNFFDKMVEECEVLPDIK-HYGCLID------MLGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 375 (454)
-|..+|-..+...-+.|++ ++..++|++... .++|+.. .|...+. .+...+++++|.++|+.+..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3666777777777777998 888899998887 5666531 1111111 12345788888888887754
Q ss_pred C-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 376 E-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 376 ~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
. .-=...|-...+--.++|+.+.|.+++.+++..+|.+.......+.-+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 3 111666666667777889999999999999988887766555544443
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.28 E-value=0.3 Score=37.09 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV 277 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (454)
..+-..+..+|.+.|++++|+.+++.+.....++.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 34444456666666666666666666555433433
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.14 E-value=0.98 Score=47.08 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcC-CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVER-KN-----LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
..|..++..+.+.|.++.+.++-....+.. ++ ...|..+..++...|++++|...+-.+.....+ ...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 456667777777777777776665554431 11 124666777777777887777777666554332 3445556
Q ss_pred HHHHhcCCC
Q 012879 318 LNACSHGGL 326 (454)
Q Consensus 318 ~~~~~~~~~ 326 (454)
+..+|..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 655555444
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.12 Score=50.44 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=47.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 387 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
.+-|...|+++.|+++.++++...|.+-.+|..|+.+|.+.|+++.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456678899999999999999988888899999999999999999998888774
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.01 E-value=2.7 Score=36.30 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCcHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF----GRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~ 318 (454)
...|.++..=|.+.+++++|++++..-.. .+.+.|+..-|.++. +-+.+.++++|......++
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34566666778888899888887654332 345556655544443 4455567777777777777
Q ss_pred HHHhcCCChH-HHHHHHHHHHHh---cC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH-------
Q 012879 319 NACSHGGLVE-EGLNFFDKMVEE---CE--VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT------- 385 (454)
Q Consensus 319 ~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------- 385 (454)
..+.....-+ .=.++.+++.+- .| -.-|+.....+...|.+.+++.+|...|-- ...+.+..+..
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT--SCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh--cCCchHHHHHHHHHHHHH
Confidence 7665544211 112233333221 12 223566667788888888888888887732 22122223322
Q ss_pred -------------HHHHHHcCCChhHHHHHHHHHHH
Q 012879 386 -------------LLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 386 -------------l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
.+--|...++...|..+++...+
T Consensus 180 ~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22235566788888887766654
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.00 E-value=4.8 Score=41.98 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
++..+...+..+.+.++.... +.++.....+..+|...|++++|...|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334444455555544433322 2244444556667777777777777777653
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.00 E-value=0.36 Score=36.73 Aligned_cols=128 Identities=12% Similarity=-0.043 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc---CCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcHH-H
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE---RKNL-------VSWTSIISGFAMHGMGKEAVENFGRMQKV-GLKPNRV-T 313 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~-~ 313 (454)
+..-+..+...|.++.|+-+.+.+... .|+. .++..+.+++...|++..|...|++.++. ..-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456666777777777776664433 3332 24455667777777777777777775432 1111111 1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHH
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLL 387 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 387 (454)
...+- .....+. .. ....+...--.+..+|.+.|++++|+.+++.+..+..++.+--.|.
T Consensus 103 ~~~~~---~~ss~p~----------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 103 RPSTG---NSASTPQ----------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred ccccc---ccCCCcc----------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 11110 0000000 00 2223444445577888888888888888888876633444433333
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.93 E-value=2.7 Score=36.01 Aligned_cols=154 Identities=12% Similarity=0.068 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCcHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN----FGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~ 318 (454)
...|.++..=|.+.+++++|++++..-.. .+.+.|+...|.++ ++-+.+.+++++......++
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44566677778888899998888665433 35556666655554 45555678888888888888
Q ss_pred HHHhcCCChH-HHHHHHHHHHHh---cC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------------
Q 012879 319 NACSHGGLVE-EGLNFFDKMVEE---CE--VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS----------------- 375 (454)
Q Consensus 319 ~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------- 375 (454)
..+......+ .-.++++.+.+- .| -.-++.....+...|.+.|++.+|...|-....
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7765532111 123344444322 12 123567778888999999999999886653221
Q ss_pred --CCCc-HhH-HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 376 --EITD-VVV-WRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 376 --~~p~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..|. ... ....+--|...|+...|..+++...+.
T Consensus 180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1010 111 112223455678888888888877644
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.76 E-value=3.6 Score=36.74 Aligned_cols=285 Identities=11% Similarity=0.012 Sum_probs=143.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCcchH-----
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVKWG-ELEFARSLFEEMPC---RNVVSW----- 174 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~---~~~~~~----- 174 (454)
...|...|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776654 12234445555555432 22333333322221 111222
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh-----hhHHhHHHHHHccCchhHHHHHHHhhhhcC--CCCchHHHH
Q 012879 175 -TGIIDGYTRMNRSNEALALFRKMVACEYTEPSE-----ITILAVLPAIWQNGDVKSCQLIHGYGEKRG--FTAFDIRVL 246 (454)
Q Consensus 175 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 246 (454)
..++..|...|++.+|..++.++.+. -...|. ..+..-+..|...++..++...+....... +.+ ++.+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRE-LKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHHH
Confidence 25778888999999998888888774 222232 235555667778888888888877765431 111 22222
Q ss_pred ----HHHHHHHH-hcCChhHHHHHHHHhhhc--CCC------hhhHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCcHH
Q 012879 247 ----NCLIDTYA-KCGCIFSASKLFEDISVE--RKN------LVSWTSIISGFAMHGMGKEAVENFG-RMQKVGLKPNRV 312 (454)
Q Consensus 247 ----~~l~~~~~-~~g~~~~a~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~ 312 (454)
..-.-.+. ..+++..|...|-+.... ... ...|..+. +.. .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhccccccccCCccHH
Confidence 22233455 678888888877665432 111 11222222 222 223222222221 111111245555
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 392 (454)
.+..++.++ ..+++.+...+++.... .+..|......+-..+- .-...++..+-+ +-...++..+...+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~--~Ir~~~L~~i~~----pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYD--TMLEQNLCRIIE----PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHH--HHHHHHHHHHHT----TCSEEEHHHHHHHHTC
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHH--HHHHHHHHHHhH----hhceeeHHHHHHHHCc
Confidence 666666665 44677666666655533 34445432211111110 001111111111 0133455555555533
Q ss_pred CCChhHHHHHHHHHHHhhc
Q 012879 393 HGNVEMGERVTRKILEMER 411 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~ 411 (454)
..++++..+-+|+..|.
T Consensus 329 --s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHCCC
Confidence 67788888888887653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=2.4 Score=38.80 Aligned_cols=43 Identities=2% Similarity=-0.099 Sum_probs=22.3
Q ss_pred CChhHHHHHHhhCCC-----C----CchhHHHHHHHHHhcCCHHHHHHHHhh
Q 012879 123 GFLKDSSKLFDEMPE-----R----NLVTWNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 123 g~~~~a~~~~~~~~~-----~----~~~~~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
|++++|++.+-.+.+ . .......++..|...|+++...+.+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~ 81 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL 81 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 556666655543321 1 122345566666666666666554443
No 251
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.02 E-value=2.9 Score=33.46 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=6.6
Q ss_pred CchhHHHHHHHHHhCCC
Q 012879 108 HVYVNTALVNMYVSLGF 124 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~ 124 (454)
+...-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333444444443
No 252
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.02 E-value=2.9 Score=33.46 Aligned_cols=186 Identities=10% Similarity=0.015 Sum_probs=102.5
Q ss_pred ChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 012879 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYT 203 (454)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 203 (454)
+.+....+.+.+..++...-...+..+.+.|+.+....+.+.+..++...-...+.++...++.+ +...+.++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---- 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---- 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----
Confidence 33344444444555666666666666666666555555555566666666666666666666543 3344444433
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
.++..+-...+.++.+.++.+....+.+ +.+. + +..+-...+.++.+.|..+... .+..+.. .++..+-...+
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d---~-~~~vr~~a~~aL~~~~~~~~~~-~L~~~l~-d~~~~vr~~a~ 164 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIK-ALKD---E-DWFVRIAAAFALGEIGDERAVE-PLIKALK-DEDGWVRQSAA 164 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---S-SHHHHHHHHHHHHHHCCGGGHH-HHHHHTT-CSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhC---C-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHc-CCCHHHHHHHH
Confidence 3566666666677777666544433333 3322 2 6666666677777777654333 3333332 26666666667
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
.++.+.+. ..+...+..+.+. ++...-...+.++...+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77777665 4555666666553 34455555555555443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.63 E-value=0.54 Score=42.20 Aligned_cols=73 Identities=15% Similarity=0.305 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHHHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVTFLSV 317 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 317 (454)
+...++..+...|+++++...+..+....| +...+..+|.++...|+..+|++.|++..+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 455677788888999999988888877766 777888899999999999999998887653 4888887654433
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.60 E-value=0.18 Score=45.39 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
...++..+...|++++|...+..+....| +...|..++.++.+.|+..+|++.|++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555566666666655555544322 44556666666666666666666665554
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.03 E-value=0.92 Score=31.00 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++..++- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 44566677777777778888888888888888888888888888888775433 3456666654
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.91 E-value=6.6 Score=35.03 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHhc-CChHHHHHHHHHHHHccCCCCChhhHH-
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPC--------RNVVSWTGIIDGYTRM-NRSNEALALFRKMVACEYTEPSEITIL- 211 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~- 211 (454)
+...+...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+... -+..+|.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 455677788888888888888877764 1223344555555543 333444444444443200 1112221
Q ss_pred -----hHHHHHHccCchhHHHHHHHhhhhcCCC----CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc----CCChhh
Q 012879 212 -----AVLPAIWQNGDVKSCQLIHGYGEKRGFT----AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE----RKNLVS 278 (454)
Q Consensus 212 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~ 278 (454)
-++..|...|++.+|.+++..+.+.-.. ..-..++..-+..|...+++.++...+...... .+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 4556666666666666666555543111 111234445555666666666666666655433 122222
Q ss_pred HHHH----HHHHH-hcCChhHHHHHHHHH
Q 012879 279 WTSI----ISGFA-MHGMGKEAVENFGRM 302 (454)
Q Consensus 279 ~~~l----~~~~~-~~g~~~~A~~~~~~m 302 (454)
-..+ ...+. ..+++..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1111 12233 456666666655554
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.78 E-value=2.4 Score=41.44 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHhhhcCCChhhHH--HHHHHHHhcC-ChhHHHHHHHHHHhC------CCCC-cHH-
Q 012879 245 VLNCLIDTYAKCGC-IFSASKLFEDISVERKNLVSWT--SIISGFAMHG-MGKEAVENFGRMQKV------GLKP-NRV- 312 (454)
Q Consensus 245 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~l~~~~~~~g-~~~~A~~~~~~m~~~------~~~p-~~~- 312 (454)
....++..+...|+ ++.|..+|+++....|...++- .++..+...+ +--+|.+++.+..+. ...+ +..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 5778889998888766444322 2333333332 223455555554321 1111 110
Q ss_pred --HH---HHHH----HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 313 --TF---LSVL----NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 313 --~~---~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
.. ..|+ .-|...|+++.|.++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 00 1122 3345679999999999998864 33447889999999999999999999998885
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.97 E-value=7.2 Score=33.72 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHHccCCCCChhhHHhHHHHHHcc
Q 012879 145 VMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALF----RKMVACEYTEPSEITILAVLPAIWQN 220 (454)
Q Consensus 145 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (454)
++..-|.+.+++++|++++.. -...+.+.|+...+.++- +-..+. ++++|......++..+...
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC
Confidence 455567777888888777643 234455566665554443 333344 7777777777777766554
Q ss_pred Cchh-----HHHHHHHhhhhcC-CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhH
Q 012879 221 GDVK-----SCQLIHGYGEKRG-FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 221 ~~~~-----~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 294 (454)
..-+ -..+...+-.+.| ..-.++.....+...|.+.+++.+|...|- ....+++..|..++--+...+...
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcCCc-
Confidence 4311 1222233333333 233478888999999999999999998883 222233355554444433333211
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.++...-..++. |...++...|...++.+.+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 223333333443 3446788888887777665
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.13 E-value=1.5 Score=32.37 Aligned_cols=73 Identities=18% Similarity=0.054 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHhcCCCCCC--cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 344 LPDIKHYGCLIDMLGRAGRLE---QAEKTALGIPSEIT--DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
.|+..+--.+..++.+..+.+ +++.+++++....| .....-.|.-++.+.|++++|.++.+.+++..|.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 567777667777888877654 56677777655434 23445567778999999999999999999999987644
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.61 E-value=0.53 Score=34.22 Aligned_cols=72 Identities=18% Similarity=0.059 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCC--cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 345 PDIKHYGCLIDMLGRAGRL---EQAEKTALGIPSEIT--DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
|+..+--.+..++++..+. .+++.+++++....| ....+-.|.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4555555566666666554 345666666554434 23445566677788888888888888888877776543
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.51 E-value=1.6 Score=29.84 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
|.-+..+-++.+... .+.|++.+..+.+++|.+.+++..|.++++.++.+
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444555555555443 55666666666666666666666666666665544
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=89.50 E-value=6.6 Score=30.95 Aligned_cols=74 Identities=8% Similarity=0.050 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
...+..+...|+.+....+.+.+..++...-...+.++.+.|+.+....+.+.+..++...-...+.++...++
T Consensus 32 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 32 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333444444333333333333334444444444444444444333333333444444444444444444443
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.01 E-value=4 Score=29.67 Aligned_cols=71 Identities=14% Similarity=-0.003 Sum_probs=39.9
Q ss_pred CCChhhHHhHHHHHHccCch---hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 204 EPSEITILAVLPAIWQNGDV---KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
.|+..|--....++.++.+. ..++.+++.+.+.+ .........-|.-++.+.|+++.|.+..+.+.+..|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 35555555555555555433 35566666666553 1123444555666666777777777777776666553
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.93 E-value=2.1 Score=31.06 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++...+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666677777777888888898999999999999999999988887533 34556766664
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.44 E-value=5.5 Score=33.08 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=74.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHh
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI----KHYGCLIDMLGR 359 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 359 (454)
....+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 34567788888888888777764 336666777888888899999999888888764 3443 3344444321
Q ss_pred cCChHHHH-HHHhcCCC-C--CCcHhHHHHHHHHHH--cCCChhHHHHHHHHHHHhhcCC
Q 012879 360 AGRLEQAE-KTALGIPS-E--ITDVVVWRTLLGACS--FHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 360 ~g~~~~A~-~~~~~~~~-~--~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
... ++|..-.. . .....-...++.+.. ..|+.++|.++-.++.+.-|..
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 122 22322111 0 112223344555544 4699999999999998876653
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.16 E-value=13 Score=31.76 Aligned_cols=182 Identities=9% Similarity=0.043 Sum_probs=101.3
Q ss_pred HHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHH----H
Q 012879 119 YVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALAL----F 194 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~ 194 (454)
-...|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|.++ +
T Consensus 23 ~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 334455555555443 455566677777777776644 22444556666655543 3
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCc-----hhHHHHHHHhhhhcCC-CCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGD-----VKSCQLIHGYGEKRGF-TAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+-..+. +.+++......++..+..... ..-..+......+.|. .-.++.....+...|.+.|++.+|...|--
T Consensus 81 ev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 81 EVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333344 677777777766666644321 1222333444443332 234788999999999999999999988763
Q ss_pred hhhcCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 269 ISVERKNLVSWTSIISGFAMH---GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
-.. .|...+..++--+... |...++ +...-..++ .|.-.|+...|..+++...+.
T Consensus 160 ~~~--~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTH--DSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCH--HHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCC--ccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 221 1344444444333332 322221 222222233 234568899999988887654
No 267
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=86.79 E-value=13 Score=31.15 Aligned_cols=17 Identities=6% Similarity=-0.173 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHhcCC
Q 012879 242 DIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~ 258 (454)
++.+-...+.++...|+
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 44444444555555444
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.34 E-value=11 Score=34.30 Aligned_cols=57 Identities=14% Similarity=-0.051 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcC----CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVER----KNLVSWTSIISGFAMHGMGKEAVENFGRM 302 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 302 (454)
...+...|.+.|+++.|.+.|.++.... .-...+-.++..+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555555544431 11223444445555555555555555544
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.98 E-value=3 Score=30.28 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.-+..+-++.+... .+.|++.+..+-+.+|.+.+++..|.++|+.++.+
T Consensus 69 ~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444444433 45566666666666666666666666666655544
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.85 E-value=3.5 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 396 VEMGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..++.++|..|...+.+ ....|...+..+...|++++|.++++.=++.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44555555555555444 223344555555555555555555555544443
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.98 E-value=13 Score=27.38 Aligned_cols=70 Identities=13% Similarity=-0.037 Sum_probs=37.9
Q ss_pred CCChhhHHhHHHHHHccCch---hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 204 EPSEITILAVLPAIWQNGDV---KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
.|+..+-.....++.++.+. ..+..+++.+.+.+.. .......-|.-++.+.|++++|.+..+.+.+..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 45555555555555555433 3455566665554211 1333444455566666666666666666666555
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.80 E-value=18 Score=28.25 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=22.1
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 136 PERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 136 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
..++...-...+..+.+.++.+....+.+.+..++...-...+.++...+.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 334444444444444454443333344444444444443344444444443
No 273
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=79.34 E-value=26 Score=29.17 Aligned_cols=125 Identities=12% Similarity=-0.039 Sum_probs=56.3
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHH
Q 012879 167 PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
..++..+-...+.++...|+.+ +...+..+.+ .++...-...+.++...+ +...+...+..+.+. + +..+
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~-~~~v 208 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---K-NEEV 208 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---S-CHHH
T ss_pred hCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---C-CHHH
Confidence 3444444444445555554422 3333333333 244444444444444443 122333333333322 2 5556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
-...+.++.+.|+......+...+.. ++ +-...+.++.+.|.. .+...+.++.+.
T Consensus 209 R~~A~~aL~~~~~~~~~~~L~~~l~d--~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~~ 263 (280)
T 1oyz_A 209 RIEAIIGLSYRKDKRVLSVLCDELKK--NT--VYDDIIEAAGELGDK-TLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHTS--SS--CCHHHHHHHHHHCCG-GGHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHhhHHHHHHHhcC--cc--HHHHHHHHHHhcCch-hhhHHHHHHHhc
Confidence 66666666666655444444444433 33 223445566666653 555566665543
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.07 E-value=7.2 Score=29.20 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 399 GERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 399 A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
+.++|..|...+.+ ....|...+..+...|++++|.++++.=++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56666666655554 23345556666666666666666666655554443
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.31 E-value=30 Score=28.75 Aligned_cols=114 Identities=9% Similarity=-0.032 Sum_probs=68.8
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh----hHHHHHHHHHhcC
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV----SWTSIISGFAMHG 290 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 290 (454)
....+.|+++.+++....-++. .|.|...-..|++.+|-.|+++.|.+-++...+..|+.. .|..+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH----
Confidence 3455677777777777766665 566888888888888888888888888888777655432 333333321
Q ss_pred ChhHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHh--cCCChHHHHHHHHHHHHh
Q 012879 291 MGKEAVENFGRMQKVGLKP-----NRVTFLSVLNACS--HGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 340 (454)
..=.+....+-.| ...-...++.+.. ..|+.++|..+-..+.+.
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111122222111 1223344444433 458888888877777654
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.21 E-value=22 Score=32.23 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH--
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKV--GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL-- 353 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 353 (454)
+...+...|.+.|++++|.+.+.++... +...-...+..+++.+...+++..+...+.++.....-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6777889999999999999999999874 333345677788889999999999999999987653333343332222
Q ss_pred --HHHHHhcCChHHHHHHHhcC
Q 012879 354 --IDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 354 --~~~~~~~g~~~~A~~~~~~~ 373 (454)
...+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 22234578899888777654
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.63 E-value=11 Score=28.74 Aligned_cols=29 Identities=3% Similarity=0.053 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..|......+-..|++.+|.++|+..++.
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444455555555555555443
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.53 E-value=29 Score=32.09 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-c------hH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 141 VTWNVMITGLVKWGELEFARSLFEEMPCRNV-V------SW-TGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 141 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~------~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
..+|.+++.|...+.++.|..+..+..-|.. . .| -.+.+.+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999999998865532 1 22 2345677788999999999988876
No 279
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=72.47 E-value=48 Score=28.80 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCCCc---hhHHHHHHHHHhcC-CHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChH
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPERNL---VTWNVMITGLVKWG-ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
..++.=|...|+.++|...++++..|.. .+...+..++-+.. .-+.+..++..+.+.+..+-..+..++.+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~----- 89 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYE----- 89 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----
Confidence 3466667777788888888877766531 11112222221111 12334444444443444444444443322
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHH-ccCchhH---HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIW-QNGDVKS---CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASK 264 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 264 (454)
+++.+.+..-..|....+..-+-+.+ ..|-... ...+.+.+...|. .......++..+.+....+.+.+
T Consensus 90 ----~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~---~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 90 ----ILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK---AASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp ----HHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC---HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----HHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHHcCHHHHHH
Confidence 22333222122455444433333222 2232221 1122233333331 34455556666666666677777
Q ss_pred HHHH
Q 012879 265 LFED 268 (454)
Q Consensus 265 ~~~~ 268 (454)
+|.+
T Consensus 163 ~~~~ 166 (339)
T 1ug3_A 163 LWRE 166 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.88 E-value=21 Score=24.36 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=55.4
Q ss_pred chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+...- ||...|.++.. .+.|..+++..-+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPW--PALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC--GGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45667777777666542 222333334566778888888888777764 78777766543 467777777777777
Q ss_pred HHhCCCCCcHHHHH
Q 012879 302 MQKVGLKPNRVTFL 315 (454)
Q Consensus 302 m~~~~~~p~~~~~~ 315 (454)
+..+| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77765 44444443
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.82 E-value=39 Score=27.86 Aligned_cols=82 Identities=9% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCCCchh--HHHHHHHHHhCCChhHHHHHHhhCCCCCc---hhHHHHHHHHHhcCC
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYV--NTALVNMYVSLGFLKDSSKLFDEMPERNL---VTWNVMITGLVKWGE 155 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~ 155 (454)
+...+..|+. ++++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++. ..+ ..+...+..|+
T Consensus 43 L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~ 117 (285)
T 1wdy_A 43 LHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGK 117 (285)
T ss_dssp HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTC
T ss_pred HHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCC
Confidence 3344445554 44455556665544321 11233444556776666666654333221 111 22333455666
Q ss_pred HHHHHHHHhhCC
Q 012879 156 LEFARSLFEEMP 167 (454)
Q Consensus 156 ~~~A~~~~~~~~ 167 (454)
.+-+..+++.-.
T Consensus 118 ~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 118 VKALKFLYKRGA 129 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 666666665543
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.69 E-value=21 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 148 TGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
..+...|++++|..+.+.+.-||...|.++. -.+.|..+++...+.++..+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 3456677777777777777777776665443 34566666666666666553
No 283
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=71.35 E-value=35 Score=26.69 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=43.7
Q ss_pred hHHHHHHHhcCCCCCCcHh-HH-----HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 363 LEQAEKTALGIPSEITDVV-VW-----RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
++.|+.+|+.+....+... .- -..+..|.+.|.+++|.+++++.....+.+.+.-..|...-.+...+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Confidence 5778899998888743221 11 223456899999999999999988777666666666665555444433
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.49 E-value=23 Score=24.22 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=56.6
Q ss_pred chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+...- ||...|.+|.. .+.|..+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAY--PDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC--GGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45677777777766542 222333334567788888888888887774 88888776654 456777777777777
Q ss_pred HHhCCCCCcHHHHH
Q 012879 302 MQKVGLKPNRVTFL 315 (454)
Q Consensus 302 m~~~~~~p~~~~~~ 315 (454)
+..+| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77665 44544443
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.36 E-value=26 Score=23.98 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 149 GLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
.+...|++++|..+.+.+.-||...|.+|. -.+.|..+++...+.++..
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 344555555555555555555555554332 2344555555555544443
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.66 E-value=21 Score=29.09 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=54.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
--++.+....++++|++++++.......... +...........++.-...+.-.-+..+.+.+.. .++.......
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~--~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~ 97 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSE--RISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence 4577889999999999999988754333221 1000112233334443444433444455444422 3455556666
Q ss_pred HHHHHhCCChhHHHHHHhhC
Q 012879 116 VNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~ 135 (454)
+..+.+.|+.++|.++|-+.
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 77778888888888877543
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.47 E-value=14 Score=29.63 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
..|......+-..|++.+|.++|+..++.+
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444555555555555555555443
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.26 E-value=49 Score=26.09 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=35.9
Q ss_pred CchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 221 GDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
+....+..+|..|...|+-..-+..|......+...|++.+|.++|+.-.+.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3355667777777777666656677777777777777777777777766653
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.92 E-value=1e+02 Score=28.59 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-------hhHH-HHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-------VSWT-SIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
...+++.+++.|...+.++.|..+..+..- |.. ..|. -+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345667777777777777777777776653 311 1121 1234445566777777777766553
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.09 E-value=1.2e+02 Score=30.90 Aligned_cols=129 Identities=8% Similarity=-0.028 Sum_probs=69.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH
Q 012879 146 MITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS 225 (454)
Q Consensus 146 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (454)
++..+...|..+-|.++...... ++..--.+.++|...|++++|...|++.-. |+..+....... ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGG----------HH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccch----------hh
Confidence 44555566667666666655554 333333466677777777777777776543 332221110000 00
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CC-Ch----hhHHHHHHHHHhcC
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RK-NL----VSWTSIISGFAMHG 290 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~----~~~~~l~~~~~~~g 290 (454)
...++.... ........|..++..+-+.+.++.+.++-+...+. .+ |. ..|+.+..+.+..|
T Consensus 883 ~~~ll~~~e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKYH---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTT---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCccc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111111 01113347788899999999999888887776654 12 22 35666776665544
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.05 E-value=61 Score=24.20 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=21.4
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
...+|..+...|+-...+..|......+...|++.+|.++|+.-.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444433444444444444444555555554444433
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.82 E-value=76 Score=25.24 Aligned_cols=87 Identities=9% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh--HHHHH
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV--NTALV 116 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 116 (454)
...++.|+.+....+++.+. ..+.. +...+..-.+.|.. .+..|+. ++++.+.+.|..++... -...+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~---~~~~~--~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQ---QGGRE--LDIYNNLRQTPLHL-AVITTLP----SVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHH---HTTCC--SCCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHH---hcCCC--CCcccccCCCHHHH-HHHcCCH----HHHHHHHHcCCCccccCCCCCCHH
Confidence 34455677766666666554 33333 32113333333333 3344443 34444555555443321 11233
Q ss_pred HHHHhCCChhHHHHHHhhC
Q 012879 117 NMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~~ 135 (454)
...+..|+.+-+..+++..
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHcC
Confidence 3444566666666666554
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.45 E-value=42 Score=25.06 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC---ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCcHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK---NLVSWTSIISGFAMHGM--GKEAVENFGRMQKVGLKPNRV 312 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 312 (454)
....++.-|...|+.++|.+.++++.. | ...+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 455677788888899999999888865 4 22334444555555332 346677777777766554443
No 294
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.25 E-value=69 Score=24.17 Aligned_cols=71 Identities=8% Similarity=0.024 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHc--CCCCCchhHHHHHHHHHhCCC
Q 012879 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKV--GFQSHVYVNTALVNMYVSLGF 124 (454)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 124 (454)
.+.+++-+++..+ ..|.+ -...-..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-
T Consensus 13 ~~~~~~~~~~~L~--~~g~r------~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILR--QGGLK------YTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHH--HHTCC------CCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH--HcCCC------CCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4566666665543 67777 3334567777787888888999999999887 656666554456677788775
Q ss_pred h
Q 012879 125 L 125 (454)
Q Consensus 125 ~ 125 (454)
+
T Consensus 85 v 85 (162)
T 4ets_A 85 V 85 (162)
T ss_dssp E
T ss_pred E
Confidence 4
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.74 E-value=78 Score=25.05 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=37.5
Q ss_pred HhccCCcchHhHHHHHHHHcCCCCCch--hHHHHHHHHHhCCChhHHHHHHhhCCCCCch---hHHHHHHHHHhcCCHHH
Q 012879 84 CATLSHPNLGTQLHAVISKVGFQSHVY--VNTALVNMYVSLGFLKDSSKLFDEMPERNLV---TWNVMITGLVKWGELEF 158 (454)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~ 158 (454)
.+..|+.+ +++.+.+.|..++.. .-...+...+..|+.+-+..+++.-..++.. .-...+...+..|+.+-
T Consensus 16 A~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~ 91 (240)
T 3eu9_A 16 ATQYGIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM 91 (240)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH
T ss_pred HHHcCChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH
Confidence 34455543 334444555444322 1123445556677777776666654432211 01123344455666666
Q ss_pred HHHHHhh
Q 012879 159 ARSLFEE 165 (454)
Q Consensus 159 A~~~~~~ 165 (454)
+..+++.
T Consensus 92 v~~Ll~~ 98 (240)
T 3eu9_A 92 VVQLMKY 98 (240)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6555554
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.41 E-value=1.3e+02 Score=30.65 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=70.5
Q ss_pred HHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CCChhhHHHHHHHHHhcCC
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RKNLVSWTSIISGFAMHGM 291 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 291 (454)
++..|...|..+.+.++.... |.++..-..+..+|...|++++|...|+++... ..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------c
Confidence 555566666666555443332 224444456777777888888888888776542 00000000 0
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHhcC
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI----KHYGCLIDMLGRAG 361 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 361 (454)
......++.... . ......-|..++..+-+.+-++.+.++-+.+.+. --..|. ..|..+.++.+..|
T Consensus 880 ~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 001111111100 0 1112346788888888889999988888888864 212222 35667777776654
No 297
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=48.90 E-value=19 Score=23.71 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
.++|+.+...|. ..... |.+.|..|-.-++..+-..|-+..+..+...-.+.|..|
T Consensus 13 IdKALDFI~~M~---tSas~--P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn~ 68 (115)
T 2es9_A 13 IEKALDFIGGMN---TSASV--PHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNP 68 (115)
T ss_dssp HHHHHHHHHTSC---TTCSS--CCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhcccc---cCCCC--CCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 478888888886 66666 777788888888888888888888888887777777543
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.88 E-value=1.2e+02 Score=25.29 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=64.2
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChHHHHH
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRN---VVSWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 192 (454)
+...+..|+.+-+..+++.-..++...-...+...+..|+.+-+..+++.-..++ ..-++. +...+..|+.+-+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~ 113 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKL 113 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHH
Confidence 3444566777766666665332222211234445556677776666666543322 222222 233345566554444
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+++.-... ...+..-+...+...+..|+.+-+..+++. |..+.+...-...+...+..|+.+-+.-+++.
T Consensus 114 Ll~~ga~~--~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 114 FVKKNWRL--MFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHCGGG--GGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCC--CccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 44431110 011111112334444555665544444433 22221211122333444556666655555554
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.11 E-value=95 Score=26.48 Aligned_cols=198 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHG--MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
...++.-|...|+.++|...++++....-.......++......+ .-+.+-.++..+.. ++-+.......+...+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Q ss_pred CCC--------hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC--hHHHHHHHhcCCCC--------CCc------
Q 012879 324 GGL--------VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR--LEQAEKTALGIPSE--------ITD------ 379 (454)
Q Consensus 324 ~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~--------~p~------ 379 (454)
..+ ++..-.++.++... ++-|-.......-..-...|+ ...|..++..=... .+.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d-~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGD-GILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHT-TSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHh-CCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred --HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCc--CcHHHHHHHHhhccc
Q 012879 380 --VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRF--GDAERLRRVMDERNA 445 (454)
Q Consensus 380 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~ 445 (454)
......++.-|...|+.++|.+.++++..-...+..+...+..++.+.+.. +....++..+.+.|+
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.31 E-value=82 Score=25.05 Aligned_cols=22 Identities=18% Similarity=0.019 Sum_probs=14.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCC
Q 012879 355 DMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
-.|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3456666666666666666555
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.82 E-value=96 Score=23.41 Aligned_cols=53 Identities=8% Similarity=-0.075 Sum_probs=38.8
Q ss_pred HhcCChHHHHHHHhcCCCC--CC--cHhHHHHHHH-H-----HHcCCChhHHHHHHHHHHHhh
Q 012879 358 GRAGRLEQAEKTALGIPSE--IT--DVVVWRTLLG-A-----CSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~--~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~~~ 410 (454)
...|++-+|.++++..-.. .+ +...|..||+ . ..+.|+...|..+++++...-
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3458998998888876655 34 4456777777 2 246799999999999998753
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.10 E-value=1.2e+02 Score=24.64 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=15.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566777777777777776654
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.60 E-value=22 Score=26.64 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=39.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC--cchHhHHHHHHHHcCCC
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH--PNLGTQLHAVISKVGFQ 106 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 106 (454)
..+.++.-|...|+.++|...++++. . |.-........+..++-+.++ .+.+..++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~---~------p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE---V------PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT---C------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC---C------CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34578888999999999999999985 1 200022333444444444322 34566666666665543
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.01 E-value=1.3e+02 Score=24.07 Aligned_cols=47 Identities=4% Similarity=-0.002 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
....+|..|...|+-..-...|......+...|++.+|.++|+.-.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44456666666555554556666666666666666666666665554
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.67 E-value=95 Score=22.29 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC---ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCcHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK---NLVSWTSIISGFAMHGM--GKEAVENFGRMQKVGLKPNRV 312 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 312 (454)
....++.-|...|+.++|.+.++++.. | ...+...+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 345677788888999999999988865 4 22344445555555432 356777888887776654443
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.90 E-value=1.2e+02 Score=24.52 Aligned_cols=121 Identities=13% Similarity=0.007 Sum_probs=65.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC----hhhHHHHHHHHh--ccCCcchHhHHHHHHHHcC-------
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD----SFTYSFLIRTCA--TLSHPNLGTQLHAVISKVG------- 104 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~------- 104 (454)
+...++.|+.+....+++.+. ..+.. +...+ ..-.+.|..+.. +.|+.+-+..+++.-...+
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~---~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLL---THKKR--LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHH---HHTCC--TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHH---hcCCC--cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 344567789888888888766 44444 31101 223344444432 5677777766666543311
Q ss_pred --CC-CCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchh----------------HHHHHHHHHhcCCHHHHHHHHh
Q 012879 105 --FQ-SHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVT----------------WNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 105 --~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
+. .|..-. +.+...+..|+.+-+.-+++.-..++... -...+...+..|+.+-+.-+++
T Consensus 84 ~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 84 SPFRDVYYRGQ-TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCBCCSSEESB-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccCCC-CHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11 011122 23445566788887777777544332221 2234445566777777777777
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.93 E-value=1.3e+02 Score=22.88 Aligned_cols=112 Identities=8% Similarity=-0.009 Sum_probs=52.8
Q ss_pred HHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh--HHHHHHH
Q 012879 41 YSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV--NTALVNM 118 (454)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 118 (454)
.+..|+.+....++..- +.. +...+...++.|..+ +..|+ .++.+.+.+.|..++... -.+.+..
T Consensus 12 A~~~g~~~~v~~ll~~~------~~~--~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT------TYQ--VDEVDTEGNTPLNIA-VHNND----IEIAKALIDRGADINLQNSISDSPYLY 78 (201)
T ss_dssp HHHTTCHHHHHHHHTCT------TCC--TTCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHhccHHHHHHHHHcC------CCC--CCCCCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34567766665555432 111 211133333344333 34454 345555556665554321 1123344
Q ss_pred HHhCCChhHHHHHHhhCC-C---CCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 012879 119 YVSLGFLKDSSKLFDEMP-E---RNLVTWNVMITGLVKWGELEFARSLFEEM 166 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 166 (454)
.+..|+.+-+..+++.-. . .+..-. ..+...+..|+.+-+..+++.-
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcC
Confidence 556677777777764432 1 111111 1233345567777666666654
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.55 E-value=1.1e+02 Score=21.91 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHc
Q 012879 144 NVMITGLVKWGELEFARSLFEEMPCRNV---VSWTGIIDGYTRMNR--SNEALALFRKMVAC 200 (454)
Q Consensus 144 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 200 (454)
..++.-|...|+.++|...++++..|.- .+...+..++-+.++ .+.+..++..+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 4556666677777777777777664421 122233333333322 34455666666554
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.21 E-value=2.3e+02 Score=24.78 Aligned_cols=195 Identities=11% Similarity=0.123 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCc--hhHHHHHHHHHhcCC--HHHHHHHHhhCCCCCcchHHHHHHHHHhc--
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNL--VTWNVMITGLVKWGE--LEFARSLFEEMPCRNVVSWTGIIDGYTRM-- 184 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-- 184 (454)
....++.=|...++.++|...++++..|.. .....++......++ -+.+-.++..+. .+..+-..+..++...
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle 134 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLK 134 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 345677778888999999999999886653 223333443333332 345667777776 3555555555554432
Q ss_pred --C----ChHHHH----HHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh------------------c
Q 012879 185 --N----RSNEAL----ALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK------------------R 236 (454)
Q Consensus 185 --~----~~~~a~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------~ 236 (454)
. +...|. .++.++...+.++|....- .... . .-..+.+.++.... .
T Consensus 135 ~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~-~~~~----~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 135 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDS-YKGT----V-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp THHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGG-GC--------CCHHHHHHHHHHHHHHTC---------CCCCCC
T ss_pred hhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHH-Hhhc----c-cchHHHHHHHHHHHHHhccchHHHHHHhcCCCC
Confidence 1 111222 2233333332444432211 0000 0 11111122211110 0
Q ss_pred CCCCch--HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCC
Q 012879 237 GFTAFD--IRVLNCLIDTYAKCGCIFSASKLFEDISVERKN---LVSWTSIISGFAMHGM--GKEAVENFGRMQKVGLKP 309 (454)
Q Consensus 237 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p 309 (454)
|..|.. ......++.=|...|+.++|.+.++++.. |. ..+...+..++-+.++ .+....++..+...|+-+
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~--p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred CCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccC--CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 111110 12346677777788888888888888765 42 2234444445544332 345667777777666554
Q ss_pred cHHHH
Q 012879 310 NRVTF 314 (454)
Q Consensus 310 ~~~~~ 314 (454)
.....
T Consensus 287 ~~q~~ 291 (358)
T 3eiq_C 287 IDQMK 291 (358)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.17 E-value=1.5e+02 Score=22.41 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=22.8
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
...+|..|...|+-..-+..|......+...|++.+|.++|+.-.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555444444444555555555555555555555554444
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.63 E-value=68 Score=21.65 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=21.6
Q ss_pred ChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHH
Q 012879 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFA 159 (454)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 159 (454)
..+.|.++++.+.+....+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666666666666555554444
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.47 E-value=2.8e+02 Score=25.29 Aligned_cols=95 Identities=14% Similarity=0.017 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
...|..-.+.+...|++++|.++--... ..-.+ +..|.+.+-..=...|...-...+|..+.+.| ..+..
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP---~giLR------t~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ 430 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAP---KGILR------TPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY 430 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSG---GGSSC------SHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCc---ccccc------CHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchH
Confidence 3446666778888899999888877764 33334 77777777666666777778888888888877 55554
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~ 135 (454)
--.-+++.-...|+.+-.++.+.+=
T Consensus 431 ESlEl~r~vL~q~r~~llekWl~e~ 455 (494)
T 1bpo_A 431 ESLELCRPVLQQGRKQLLEKWLKED 455 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhhHHhHHHHhccHHHHHHHHHhcC
Confidence 4445666666777766666665543
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.46 E-value=1.7e+02 Score=22.92 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=37.2
Q ss_pred chHHHHHHHHH---hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc-----hhHHHHHHHhhhhcCC
Q 012879 172 VSWTGIIDGYT---RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD-----VKSCQLIHGYGEKRGF 238 (454)
Q Consensus 172 ~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 238 (454)
..+--+|+++. +-.+++.|+-++-+|++. | .|....-..++-+....|. ...|...++.....|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~-G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEA-G-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34444566654 447888888888888887 6 5555444555555544443 2233344444444443
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.06 E-value=1.9e+02 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=15.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+-.|.+.|.+++|.+++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 344566677777777777766654
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.92 E-value=1.8e+02 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC
Q 012879 174 WTGIIDGYT---RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG 221 (454)
Q Consensus 174 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (454)
+--+|+++. +-.+++.|+-++-+|++. |-.|....-..++-+....|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~-GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTA-GGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 334555554 447888888888888887 65565555455555544443
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.78 E-value=1.9e+02 Score=23.17 Aligned_cols=87 Identities=13% Similarity=-0.059 Sum_probs=52.3
Q ss_pred HHHHHhccCCcchHhHHHHHHHHcCCCCCc-------hhHHHHHHHHHhC---CChhHHHHHHhhCCCCC----------
Q 012879 80 LIRTCATLSHPNLGTQLHAVISKVGFQSHV-------YVNTALVNMYVSL---GFLKDSSKLFDEMPERN---------- 139 (454)
Q Consensus 80 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~---------- 139 (454)
.+...+..|+.+.+..+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.-..++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 345566788888888888888887765543 223333 344455 77777777766422111
Q ss_pred ----chhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 140 ----LVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 140 ----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
..- ...+...+..|+.+-+..+++.-..
T Consensus 84 ~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 84 TDEFYQG-HSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp CSTTTTT-CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccC-CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 111 2334445667788877777776443
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.45 E-value=98 Score=23.36 Aligned_cols=47 Identities=6% Similarity=-0.168 Sum_probs=25.7
Q ss_pred CCcchHhHHHHHHHHcCCCC--CchhHHHHHH-H-----HHhCCChhHHHHHHhh
Q 012879 88 SHPNLGTQLHAVISKVGFQS--HVYVNTALVN-M-----YVSLGFLKDSSKLFDE 134 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~ 134 (454)
|++-+|.++++..-.....+ ....|..||. + ..+.|+...|..++.+
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~ 100 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRT 100 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777777777766544334 3445555555 2 2234555555555543
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.15 E-value=1.5e+02 Score=21.70 Aligned_cols=56 Identities=9% Similarity=-0.016 Sum_probs=31.5
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
|.+++..-. .++..+...+..-.|.++++.+.+.+... +..+...-++.+...|-+
T Consensus 17 g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 17 GVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNM-SVATVYNNLRVFRESGLV 72 (145)
T ss_dssp TCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCC-ChhhHHHHHHHHHHCCCE
Confidence 655555433 23344444555666777777776664333 555555556666666654
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.90 E-value=1.5e+02 Score=21.67 Aligned_cols=58 Identities=3% Similarity=-0.082 Sum_probs=39.6
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
..|.+ + ...-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 15 ~~g~r--~----T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 15 ETGVR--I----TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HTTCC--C----CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCC--C----CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 66766 2 3344566666666677788999999998877666666655566777777743
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.39 E-value=63 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=31.6
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHH
Q 012879 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (454)
...+.|.++++.+..+.+.+|..++.++...|+..-|.-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467889999999998888999999999987777665543
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.09 E-value=89 Score=22.42 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=13.4
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 012879 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 322 (454)
+..-.|.++++.+.+.+...+..|....+..+.
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 334444444444444433333333333333333
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.87 E-value=1.5e+02 Score=21.35 Aligned_cols=58 Identities=3% Similarity=0.060 Sum_probs=38.3
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccC-CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLS-HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
..|.+ + ...-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 11 ~~g~r--~----T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 11 KAGLK--V----TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HTTCC--C----CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HCCCC--C----CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 56666 2 334456666666666 6778999999998877666666555566777776643
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.58 E-value=2.3e+02 Score=23.38 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=6.6
Q ss_pred HhCCChhHHHHHHhh
Q 012879 120 VSLGFLKDSSKLFDE 134 (454)
Q Consensus 120 ~~~g~~~~a~~~~~~ 134 (454)
+..|+.+-+.-+++.
T Consensus 103 ~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344444444444443
No 324
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.44 E-value=46 Score=20.09 Aligned_cols=22 Identities=0% Similarity=-0.135 Sum_probs=10.7
Q ss_pred ccCCcchHhHHHHHHHHcCCCC
Q 012879 86 TLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
..|+.+.|...+-.|...+..|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSC
T ss_pred cCCCHHHHHHHHHcCcCCCCCC
Confidence 3445555555555554443333
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.96 E-value=2.4e+02 Score=25.68 Aligned_cols=45 Identities=16% Similarity=-0.001 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
.+.+-|.++.. +.|++--...|..-.+.+...|++++|.++--..
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 44444444432 2333333344444455555556666555554443
No 326
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.54 E-value=40 Score=20.34 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=18.1
Q ss_pred cCChHHHHHHHHHHHHccCCCCCh
Q 012879 184 MNRSNEALALFRKMVACEYTEPSE 207 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~ 207 (454)
.-+++.|...|.++...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457889999999988765666654
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.51 E-value=1.7e+02 Score=21.56 Aligned_cols=58 Identities=7% Similarity=0.050 Sum_probs=39.7
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccC-CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLS-HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
..|.+ + ...-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 10 ~~g~r--~----T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 10 DAGLK--V----TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HTTCC--C----CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCC--C----CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 66666 3 334456666666666 6778999999998877666666655566777777754
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.34 E-value=61 Score=19.56 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHH-Hcc
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAI-WQN 220 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 220 (454)
.++|...|.+|++. ...++..||...++.+ ++-
T Consensus 2 ~eEae~aF~~lL~~-~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKE-NQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHH-TTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHH-cCCCCCCcHHHHHHHhccCC
Confidence 46788889998887 4445567777777776 443
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.09 E-value=1.7e+02 Score=21.51 Aligned_cols=58 Identities=7% Similarity=0.016 Sum_probs=40.4
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
..|.+ ....-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 20 ~~g~r------~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 20 KNGLK------NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HCC--------CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCC------CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 67777 44455667777777777888999999998877666666655566777777743
No 330
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.06 E-value=2e+02 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
.++.+...|...|+.++|+..+..--
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 34445556666666677666665543
No 331
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.92 E-value=3.2e+02 Score=24.19 Aligned_cols=301 Identities=12% Similarity=0.078 Sum_probs=139.2
Q ss_pred HHHHHhccCCcchHhHHHHHHHHcCCCCCchh--HHHHHHHHHhCCChhHHHHHHhhCCCCCch--hHHHHHHHHHhcCC
Q 012879 80 LIRTCATLSHPNLGTQLHAVISKVGFQSHVYV--NTALVNMYVSLGFLKDSSKLFDEMPERNLV--TWNVMITGLVKWGE 155 (454)
Q Consensus 80 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~ 155 (454)
.+...+..|+.+ +++.+.+.|..++... ....+...+..|+.+-+..+++.-...+.. .-...+...+..|+
T Consensus 17 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 17 PLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 344455667654 4444455666555321 223455666788888888888764432211 11234555667788
Q ss_pred HHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHh
Q 012879 156 LEFARSLFEEMPCRNV---VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGY 232 (454)
Q Consensus 156 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (454)
.+-+.-+++.-..++. .-.+ .+...+..|+.+-+..+++.-... ...+... ...+...+..|+.+.+..+++.
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEASQ--ACMTKKG-FTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTS-CCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCC--cCCCCCC-CCHHHHHHHcCCHHHHHHHHhC
Confidence 8888878776544332 2222 344455667777666555432111 1111111 1234445566777766555543
Q ss_pred hhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 012879 233 GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311 (454)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 311 (454)
-...... +... ...+...+..|+.+-+.-+++.-... .++...++. +...+..|+.+-+. .+.+.|..++.
T Consensus 169 g~~~~~~--~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~ 240 (437)
T 1n11_A 169 DAHPNAA--GKNG-LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVAR----SLLQYGGSANA 240 (437)
T ss_dssp TCCTTCC--CSSC-CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHH----HHHHTTCCTTC
T ss_pred CCCCCCC--CCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCC
Confidence 2211100 1111 11234455667765554444332221 112222222 33344566654443 34445544332
Q ss_pred H---HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHH
Q 012879 312 V---TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI---KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWR 384 (454)
Q Consensus 312 ~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 384 (454)
. -.+.+. ..+..|..+-+ +.+.+. +..++. .-. +.+...+..|+.+-+..+++.-... ..+..-.+
T Consensus 241 ~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~-~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 313 (437)
T 1n11_A 241 ESVQGVTPLH-LAAQEGHAEMV----ALLLSK-QANGNLGNKSGL-TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313 (437)
T ss_dssp CCTTCCCHHH-HHHHTTCHHHH----HHHHTT-TCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCC
T ss_pred CCCCCCCHHH-HHHHCCCHHHH----HHHHhc-CCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCC
Confidence 2 222233 33445665433 333333 433321 111 2333445677877776666653332 12222222
Q ss_pred HHHHHHHcCCChhHHHHHHH
Q 012879 385 TLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~ 404 (454)
.| ...+..|+.+-+..+++
T Consensus 314 ~L-~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 314 PL-HVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp HH-HHHHHSSCSHHHHHHHH
T ss_pred HH-HHHHHcCcHHHHHHHHh
Confidence 23 33345677654444443
No 332
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.91 E-value=2.3e+02 Score=22.49 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHHh---cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc-----hhHHHHHHHhhhhcCCC
Q 012879 169 RNVVSWTGIIDGYTR---MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD-----VKSCQLIHGYGEKRGFT 239 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 239 (454)
++...+--+|+++.+ -.+++.|+-++-+|++. |-.|....-..++-+...-|. ...|...++.....|.+
T Consensus 30 k~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~-GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 30 KNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEA-GEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344455556676654 48899999999999887 666665555555555544443 23344444445555543
No 333
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=27.87 E-value=76 Score=18.86 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=9.5
Q ss_pred HHHHHHHHccCChHHHHHHHH
Q 012879 35 NTLLHFYSLAESPQKAFLLYK 55 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~ 55 (454)
+.+.+.+...+..+++..+.+
T Consensus 26 ~tIA~~L~~~~~~eE~v~mIr 46 (61)
T 3ph0_C 26 ASIADWLAQEECMAECVTLIR 46 (61)
T ss_dssp HHHHHHHHTSSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH
Confidence 344444444444444444443
No 334
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.78 E-value=2.2e+02 Score=22.26 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=57.6
Q ss_pred HHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh---HHHHH
Q 012879 40 FYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV---NTALV 116 (454)
Q Consensus 40 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~ 116 (454)
..++.|+.+....+++ .|.. +...+....+ .+...+..|+. ++++.+.+.|..++... -...+
T Consensus 15 ~A~~~g~~~~~~~Ll~-------~g~~--~~~~~~~g~t-~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 15 KATQYGIYERCRELVE-------AGYD--VRQPDKENVT-LLHWAAINNRI----DLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp HHHHTTCHHHHHHHHH-------TTCC--TTCCCTTSCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred HHHHcCChHHHHHHHH-------cCCC--cCCCCCCCCC-HHHHHHHhCCH----HHHHHHHHcCCcchhhcCCcCCChh
Confidence 3456777665544443 3332 2111333333 34445556665 44555556664443221 22345
Q ss_pred HHHHhCCChhHHHHHHhhCCCCC---chhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012879 117 NMYVSLGFLKDSSKLFDEMPERN---LVTWNVMITGLVKWGELEFARSLFEEMP 167 (454)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 167 (454)
...+..|+.+-+..+++.-..++ ...+ ..+...+..|+.+-+..+++.-.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQ 133 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCC
Confidence 55667788887777776533322 2112 23444556678777777766543
No 335
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.21 E-value=1.1e+02 Score=28.14 Aligned_cols=64 Identities=11% Similarity=-0.013 Sum_probs=28.4
Q ss_pred ChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 362 RLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
.++.|..+|..+....| +...|+.|.-.....|+.-+|.-.+-+.+....+.+.+...+...+.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34445555554444422 23445555444444455444444444444433333334444444443
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.13 E-value=1.6e+02 Score=21.55 Aligned_cols=57 Identities=9% Similarity=0.108 Sum_probs=36.5
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
..|.+ + ...-..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 12 ~~g~r--~----T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 12 QRGYR--L----TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTTCC--C----CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCC--c----CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 66666 3 223445555555556 678899999888877556665544466677777643
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.03 E-value=81 Score=22.97 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=5.9
Q ss_pred ChHHHHHHHHHHHH
Q 012879 326 LVEEGLNFFDKMVE 339 (454)
Q Consensus 326 ~~~~a~~~~~~~~~ 339 (454)
+.-.|.++++.+.+
T Consensus 28 ~h~sa~eI~~~l~~ 41 (139)
T 3mwm_A 28 EFRSAQELHDMLKH 41 (139)
T ss_dssp SCEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 33344444444443
No 338
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.91 E-value=2.4e+02 Score=22.11 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCCCchh--HHHHHHHHHhCCChhHHHHHHhhCCCCCchh--HHHHHHHHHhcCCH
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYV--NTALVNMYVSLGFLKDSSKLFDEMPERNLVT--WNVMITGLVKWGEL 156 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ll~~~~~~~~~ 156 (454)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++... -...+...+..|+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 4445567887777777776666665544321 1234445566777777766666443322211 11233444566777
Q ss_pred HHHHHHHhhCC
Q 012879 157 EFARSLFEEMP 167 (454)
Q Consensus 157 ~~A~~~~~~~~ 167 (454)
+-+..+++...
T Consensus 93 ~~~~~Ll~~~~ 103 (241)
T 1k1a_A 93 TCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHcCC
Confidence 77776666543
No 339
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=25.62 E-value=1e+02 Score=20.60 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHHcCCChh---HHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 385 TLLGACSFHGNVE---MGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 385 ~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
-+...+.-.+..+ .+.++|..+.+.+.-.+.....+...+...|+.+-..++.+.
T Consensus 25 FLc~d~i~~~kle~i~s~~dlf~~Le~~~~l~~~nl~~L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 25 YLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp HHHHHHTCSHHHHHCSSSHHHHHHHHHTTSCBTTBCHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHhHhhccchhhhccCCHHHHHHHHHHcCCCCcchHHHHHHHHHHCCHHHHHHHHHHh
Confidence 3333444444444 459999999998888888888899999999999887776654
No 340
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.17 E-value=2.7e+02 Score=22.45 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=6.6
Q ss_pred HhcCChHHHHHHHh
Q 012879 358 GRAGRLEQAEKTAL 371 (454)
Q Consensus 358 ~~~g~~~~A~~~~~ 371 (454)
++.|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455544444444
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.97 E-value=2.5e+02 Score=21.91 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=50.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh--HHHH
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV--NTAL 115 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 115 (454)
+...++.|+.+....+++.-. ..... + +....+.|. ..+..|+. ++++.+.+.|..++... -.+.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~---~~~~~--~---~~~g~t~L~-~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~ 76 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADK---SLATR--T---DQDSRTALH-WACSAGHT----EIVEFLLQLGVPVNDKDDAGWSP 76 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCG---GGGGC--C---CTTSCCHHH-HHHHHTCH----HHHHHHHHTTCCSCCCCTTSCCH
T ss_pred HHHHHHhCCHHHHHHHHHhch---hhhhc--C---CCCCCCHHH-HHHHcCcH----HHHHHHHHhCCCCCCcCCCCCCH
Confidence 445566777777777666532 11001 1 222223333 23344443 34444455555443321 1123
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCchh--HHHHHHHHHhcCCHHHHHHHHhh
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLVT--WNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
+...+..|+.+-+..+++.-..++... -...+...+..|+.+-+..+++.
T Consensus 77 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 334445566665555555433221110 11223334455666655555544
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.97 E-value=2.2e+02 Score=21.33 Aligned_cols=70 Identities=7% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc--CCCCchHHHHHHHHHHHHhcCCh
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR--GFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
+.+++-+.+..+..|.+++..- ..++..+...+..-.|.++++.+.+. +... +..+...-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i-s~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV-GIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC-CHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCE
Confidence 4455555555444466665533 34455555666666777777777665 3222 444444445555555543
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.82 E-value=2.1e+02 Score=21.05 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 300 GRMQKVGLKPNRVTFLSVLNACSHGG-LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 300 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667777766544 3445555555 566788888888776 44455555545556666666543
No 344
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.63 E-value=1.2e+02 Score=20.20 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
.+......+.+.|++++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445566666677777666555544
No 345
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.60 E-value=1e+02 Score=19.00 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
..++.+++.++...-.+.++-.+.++. ..|.- +..+|..-.+.+++.
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL---~~g~I------~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRML---HRGTI------PLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTSS------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHHH
Confidence 357788888888888999999999999 77766 778888777776654
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.57 E-value=1.4e+02 Score=21.36 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 77 YSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 77 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3456666666777888999999998877666666655567777777743
No 347
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.04 E-value=1.7e+02 Score=19.79 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC-hHH-HHHHHHHHHHhcCCCCChhHHHHH
Q 012879 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-VEE-GLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
-.|.++.+++...|+.|+..+...++..|...+- .++ +.+++--.....|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3467777888888999988888888877765443 222 233322222334777877666554
No 348
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.03 E-value=3e+02 Score=23.81 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 351 GCLIDMLGRAGRLEQAEKTALGIPSE----ITDVVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
+.++..+...+..+.-..+++.+... .-+... ..++..+...+..+.-..+++++..
T Consensus 218 n~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~g-s~Vvek~l~~~~~~~r~~ii~el~~ 278 (351)
T 3gvo_A 218 NYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA-SNVVEKCVTHASRAERALLIDEVCC 278 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTH-HHHHHHHHHHSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 55667777778877777788877654 111112 2344555555665555566666654
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.99 E-value=1.4e+02 Score=21.74 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh
Q 012879 75 FTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125 (454)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (454)
..-..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344566777777777888999999998877666666655566777777754
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.47 E-value=3.6e+02 Score=23.23 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhc-CChHHHHHHHHHHHHc
Q 012879 143 WNVMITGLVKWGELEFARSLFEEMPCRNV---VSWTGIIDGYTRM-NRSNEALALFRKMVAC 200 (454)
Q Consensus 143 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 200 (454)
...++.-|...|+.++|...++++..|.- .+...+..++-+. ...+.+..++..+.+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~ 75 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCA 75 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 45678889999999999999999987642 1122222222221 1234556677777665
No 351
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.39 E-value=2.2e+02 Score=20.88 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
|.+++..-. .++..+...+..-.|.++++.+.+.+... +..+...-++.+...|-+
T Consensus 22 g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 22 GLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNT-SISSVYRILNFLEKENFI 77 (150)
T ss_dssp C--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCcE
Confidence 555544333 33444444555666777777776654322 555555555666666644
No 352
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.34 E-value=2.9e+02 Score=21.73 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=36.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhcCCCC
Q 012879 288 MHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-----VEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 288 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 345 (454)
+..+++.|+-.+.+|++.| .|....-..++.+....|. ...|...++..... |++-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 4578888999999999988 6665555555666655553 23445555555554 6543
No 353
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.28 E-value=1.1e+02 Score=22.02 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHhCCCCCcHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 302 MQKVGLKPNRVTFLSVLNACSHGG-LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 4445555554333 2333333443 455566666666554 3333444444444555555543
No 354
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=22.26 E-value=2.1e+02 Score=20.08 Aligned_cols=17 Identities=6% Similarity=-0.156 Sum_probs=6.8
Q ss_pred CchhHHHHHHHHHhCCC
Q 012879 108 HVYVNTALVNMYVSLGF 124 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~ 124 (454)
+..+-...+.++.+.|+
T Consensus 55 ~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp CHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333334444444443
No 355
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.20 E-value=3e+02 Score=21.93 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=68.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCC----CChhhHHHHHHHHhc--cCCcchHhHHHHHHHHcCCCC----
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPL----FDSFTYSFLIRTCAT--LSHPNLGTQLHAVISKVGFQS---- 107 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~---- 107 (454)
+...++.|+.+....+++.+. ..+.. +.. .|....+.|..++.. .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~---~~g~~--i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLR---WNSKY--LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHH---HHTCC--TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH---HcCCC--cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 445567788887777777766 55544 321 133444455444432 377776666665544332111
Q ss_pred ------CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchh---------------HHHHHHHHHhcCCHHHHHHHHh
Q 012879 108 ------HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVT---------------WNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 108 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
|..-. +.+...+..|+.+-+..+++.-..++... -...+...+..|+.+-+.-+++
T Consensus 81 ~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 81 AQCTDEFYQGH-SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCC-CHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11222 34445567889888888887644332211 2234455567788888888887
No 356
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.31 E-value=4.2e+02 Score=23.33 Aligned_cols=301 Identities=13% Similarity=0.089 Sum_probs=139.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch--hHHHH
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY--VNTAL 115 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 115 (454)
+...+..|+.+-+..+++ .|.. |...+....+ .+...+..|+.+ +.+.+.+.|..++.. .-.+.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~-------~g~~--~~~~~~~~~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQ-------RGAS--PNVSNVKVET-PLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTP 83 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH-------TTCC--SCCSSSCCCC-HHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCH
T ss_pred HHHHHHCCCHHHHHHHHH-------cCCC--CCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCH
Confidence 334456677665444443 3333 3111333223 344445566654 444445555444322 11234
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChHHH
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLV--TWNVMITGLVKWGELEFARSLFEEMPCRN---VVSWTGIIDGYTRMNRSNEA 190 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 190 (454)
+...+..|+.+-+.-+++.-..++.. .-...+...++.|+.+.+..+++.-...+ ..-++ .+...+..|+.+-+
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v 162 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVA 162 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHH
Confidence 55566788888888787764443221 11123455667889988888887654322 11122 34444566776655
Q ss_pred HHHHHHHHHccCCCCChh--hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc--hHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 191 LALFRKMVACEYTEPSEI--TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF--DIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
..+++ . +..++.. .-...+...+..|+.+-+..+++ .|..+. +.... ..+...+..|+.+-+..++
T Consensus 163 ~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 163 ELLLE----R-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP----RGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHH----T-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG----GTCCSCCCCTTCC-CHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh----C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHH
Confidence 44443 3 3333321 11123444456677665544443 332221 11111 2234455677777666666
Q ss_pred HHhhhc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH---HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 012879 267 EDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR---VTFLSVLNACSHGGLVEEGLNFFDKMVEECE 342 (454)
Q Consensus 267 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (454)
+.-... ..+....+.+ ...+..|..+-+. .+.+.|..++. .-.+.+. ..+..|..+-+ +.+.+. |
T Consensus 233 ~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~-g 301 (437)
T 1n11_A 233 QYGGSANAESVQGVTPL-HLAAQEGHAEMVA----LLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVA----DVLIKH-G 301 (437)
T ss_dssp HTTCCTTCCCTTCCCHH-HHHHHTTCHHHHH----HHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHH----HHHHHH-T
T ss_pred HcCCCCCCCCCCCCCHH-HHHHHCCCHHHHH----HHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHhC-C
Confidence 543221 1122222222 2334556654333 33444443321 1112222 23345555433 333443 4
Q ss_pred CCCChhH--HHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 343 VLPDIKH--YGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 343 ~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
..++... -.+.+...+..|+.+-+.-+++.-.
T Consensus 302 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 335 (437)
T 1n11_A 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 4333211 1123344556788877777776533
No 357
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.29 E-value=2.2e+02 Score=19.96 Aligned_cols=17 Identities=6% Similarity=0.011 Sum_probs=6.7
Q ss_pred CChhhHHHHHHHHHhcC
Q 012879 274 KNLVSWTSIISGFAMHG 290 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g 290 (454)
++..+-...+.++.+.|
T Consensus 85 ~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 85 DSGFVRSGAARSLEQIG 101 (131)
T ss_dssp CCTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333344444444
No 358
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.02 E-value=1.7e+02 Score=23.51 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=34.8
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCCCchh-------HHHHHHHHH--hCCChhHHHHHHhh
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYV-------NTALVNMYV--SLGFLKDSSKLFDE 134 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~ 134 (454)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4445678899999999998888776665332 233333322 56777777666654
No 359
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.15 E-value=3.5e+02 Score=23.18 Aligned_cols=75 Identities=9% Similarity=0.128 Sum_probs=49.5
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH--HHHHHH---HhcCChHHHHHHHhc
Q 012879 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG--CLIDML---GRAGRLEQAEKTALG 372 (454)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~---~~~g~~~~A~~~~~~ 372 (454)
++..+.+.|+.|...++..++..+.+.=.++.+..+|+.+... |. ....+. +++..+ .-..+.++...++..
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e-g~--~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~ 291 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD-GE--EFLFRTALGILKLFEDILTKMDFIHMAQFLTR 291 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH-CH--HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 5566677889999999988988888877889999999999887 52 221111 111111 112356666666666
Q ss_pred CCC
Q 012879 373 IPS 375 (454)
Q Consensus 373 ~~~ 375 (454)
+..
T Consensus 292 lp~ 294 (334)
T 2qq8_A 292 LPE 294 (334)
T ss_dssp CCT
T ss_pred CCC
Confidence 544
Done!