Query 012880
Match_columns 454
No_of_seqs 82 out of 84
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 7.4E-97 2E-101 748.5 22.7 343 4-446 14-373 (375)
2 KOG2092 Uncharacterized conser 100.0 3.5E-52 7.6E-57 411.4 7.7 311 5-408 55-381 (381)
3 KOG2092 Uncharacterized conser 100.0 4.8E-30 1E-34 254.6 0.4 187 236-432 1-187 (381)
4 PF12679 ABC2_membrane_2: ABC- 44.9 2.4E+02 0.0051 26.8 10.3 28 396-423 171-198 (277)
5 PF00317 Ribonuc_red_lgN: Ribo 41.8 27 0.00058 28.8 2.9 18 2-19 27-44 (83)
6 PF03268 DUF267: Caenorhabditi 27.2 1.3E+02 0.0027 32.2 5.7 39 377-424 233-271 (353)
7 KOG4438 Centromere-associated 24.4 75 0.0016 34.7 3.5 42 6-47 385-431 (446)
8 TIGR01257 rim_protein retinal- 21.0 8.2E+02 0.018 32.4 11.9 35 390-424 738-772 (2272)
9 PF04021 Class_IIIsignal: Clas 20.5 1.6E+02 0.0035 20.3 3.3 23 21-43 2-24 (28)
10 PF04290 DctQ: Tripartite ATP- 19.9 79 0.0017 27.1 2.2 29 16-44 55-83 (133)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=7.4e-97 Score=748.49 Aligned_cols=343 Identities=27% Similarity=0.442 Sum_probs=253.6
Q ss_pred cchHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCcccccCcccCccceEEEEEeecCCCCCC
Q 012880 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 82 (454)
Q Consensus 4 ~~~f~rv~~~yar~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~F~-q~~~Cl~~~~~~~wpr~giLrVeI~~n~~~~~~ 82 (454)
|-+|+|||.+|||+|||++||+|||++|+||+++|++|+|||++|+ +|++||+|+++. |||+|||||||+||. |..+
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n~-~~~~ 91 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRNL-ESKN 91 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecCC-Cccc
Confidence 4589999999999999999999999999999999999999999999 889999999995 999999999999985 4444
Q ss_pred CCCCccccccccccchhhhhhhhhhhhhhcccCCccccccccCcCCCCCcCCcccccccccccccccccccchHhhhhhh
Q 012880 83 DSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSA 162 (454)
Q Consensus 83 ~~~s~~~~~~~~~~~~e~lei~~~~~~~f~k~~~~~~E~~~~~~~~~~~s~~~~d~~~~~~~e~~~~~~~~s~ke~~k~~ 162 (454)
...+++ ++++..+...+- ...+++.+.+ .+..+ .|.....
T Consensus 92 i~~~~~-~ee~L~r~~qep-----~s~siEpsTt--------eeelt--------------------------~el~~~~ 131 (375)
T PF09746_consen 92 IFQQYY-DEESLLRNVQEP-----GSYSIEPSTT--------EEELT--------------------------TELFQNS 131 (375)
T ss_pred hhhhhh-hhcchhhhhccc-----cccCcCcccc--------chhhh--------------------------Hhhhhcc
Confidence 433332 222222222111 0111111110 00000 0000000
Q ss_pred hhcccccccchhhHHHHHHHHHHHHHHhhhhhhccccccCccccccchhhcccccchhhhhh-------hccccCCceEE
Q 012880 163 IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLE-------NRTKAFEPTYL 235 (454)
Q Consensus 163 ~~~~~~k~~~~~S~~~~~~~~i~~~f~klw~i~g~~~nld~~k~~~~~~~d~l~~~~v~~~e-------~~~~~~e~~ye 235 (454)
-...... -.+..|. |+..+....|..+.....+++ +.....||+||
T Consensus 132 s~kl~~~---~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~ve 184 (375)
T PF09746_consen 132 SIKLESD---LEPSFLS------------------------SDSSLNNTFDEDNISDTFDFEEIMQLKNKVWPQDEYIVE 184 (375)
T ss_pred ccccccc---ccccccC------------------------CcccccccccccccccccccchhhcccccCCcccceeEE
Confidence 0000000 0000000 000000011111111111111 11223688999
Q ss_pred EeeeceeeccCcccccccCceeEEEEeCC-CCCCCcchHHHHHHhhhccchhHHhhhhcc----cCCceeEEecccCeEE
Q 012880 236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLLH----TPGQGYLYNCQTKEFY 310 (454)
Q Consensus 236 YSlE~G~L~Ls~~aR~~~nIpt~~V~L~~-~~~CFG~~~~~lll~~fvGYD~ilmnsl~~----~~gkGYLrN~~S~E~y 310 (454)
||+||||||||+++|++|||||++|+||+ +|+||||+|+|+++++|+||||++|+|+|+ ++|||||||++|||||
T Consensus 185 YsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y 264 (375)
T PF09746_consen 185 YSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHY 264 (375)
T ss_pred eehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccce
Confidence 99999999999999999999999999996 899999999999999999999999999995 6899999999999999
Q ss_pred eeecccCCCCCCcccchhhhhhHhHHHHHHHHHHHhhhhhHHhHHhhhhhHHHHHHHHHHhcc----ccccchhhhHHHH
Q 012880 311 NLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQ----HRLPTFQLIFVHV 386 (454)
Q Consensus 311 ~l~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~----~~~P~a~Li~~~v 386 (454)
||+++|. ++| ++|+ +++|+|++||++|||||||||||||+|||||||+.+ +++|+|||+ +|
T Consensus 265 ~fv~~~~----~~r-~sy~--------~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~~p~a~ll--t~ 329 (375)
T PF09746_consen 265 RFVSMWW----MAR-SSYL--------AAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIFFPAAPLL--TV 329 (375)
T ss_pred ehhhhhh----hhc-cHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccccccceee--ee
Confidence 9999872 566 6887 678899999999999999999999999999999764 556777776 56
Q ss_pred HHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhhhcceeeEeeeceecceeccCCC
Q 012880 387 IESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAP 446 (454)
Q Consensus 387 i~aLVfvpvmiGm~~fm~EFf~D~~lAFyViliVWladqf~aIsv~~~~~~~~~~~~~~~ 446 (454)
|++|| ||||||+|||||++||||||||||+||||||| ||+++++
T Consensus 330 il~lv------gm~~~m~eff~d~~~af~vil~vw~~d~~~~i----------~c~t~~~ 373 (375)
T PF09746_consen 330 ILALV------GMEAIMSEFFNDTTTAFYVILIVWLADQYDAI----------CCHTPIS 373 (375)
T ss_pred ehhhH------HHHHHHHHHhcchhHHHHHHHHHHHHhhccEE----------EecCccC
Confidence 55554 99999999999999999999999999999999 9999876
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-52 Score=411.38 Aligned_cols=311 Identities=20% Similarity=0.232 Sum_probs=225.2
Q ss_pred chHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCcccccCcccCccceEEEEEeecCCCCCCC
Q 012880 5 HTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQND 83 (454)
Q Consensus 5 ~~f~rv~~~yar~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~F~-q~~~Cl~~~~~~~wpr~giLrVeI~~n~~~~~~~ 83 (454)
.++.|+|..|++.+||..||++|+..|++|.+++..|+|||++|+ +|.+|++++++. |||.||+|||+.+..+..
T Consensus 55 al~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rsp~scl~~~r~~-w~R~gi~rVev~~H~s~r--- 130 (381)
T KOG2092|consen 55 ALQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRSPMSCLFTLRET-WTRMGIFRVEVQHHASHR--- 130 (381)
T ss_pred HHHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhh-hhhheeEEEEEEecchhc---
Confidence 478999999999999999999999999999999999999999999 999999999996 999999999999742110
Q ss_pred CCCccccccccccchhhhhhhhhhhhhhcccCCccccccccCcCCCCCcCCcccccccccccccccccccchHhhhhhhh
Q 012880 84 SDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAI 163 (454)
Q Consensus 84 ~~s~~~~~~~~~~~~e~lei~~~~~~~f~k~~~~~~E~~~~~~~~~~~s~~~~d~~~~~~~e~~~~~~~~s~ke~~k~~~ 163 (454)
+ .+.- -|--.. +|.. .-.++ -| +.++...
T Consensus 131 -------------~-p~Fl-------~f~~~~---~~~~--------vF~~~---aI-----~i~s~l~----------- 159 (381)
T KOG2092|consen 131 -------------L-PTFL-------LFFVHV---IESL--------VFVPI---AI-----GILSFLF----------- 159 (381)
T ss_pred -------------c-hHHH-------HHHhhh---cccc--------cccch---hh-----hHHHhhH-----------
Confidence 0 1110 000000 0000 00000 00 0000000
Q ss_pred hcccccccchhhHHHHHHHHHHHHHHhhhhhhccccccCcc--ccccchhh-ccccc-chhhhhh---hccccCCceEEE
Q 012880 164 IHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVP--KLMHLLYL-DRIHS-YAVQWLE---NRTKAFEPTYLY 236 (454)
Q Consensus 164 ~~~~~k~~~~~S~~~~~~~~i~~~f~klw~i~g~~~nld~~--k~~~~~~~-d~l~~-~~v~~~e---~~~~~~e~~yeY 236 (454)
.++. +|..-----+.++.+++..+|.- |-++...+ +.+|+ ++...-+ +--+.++|.+||
T Consensus 160 ------------~~~~--e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~vey 225 (381)
T KOG2092|consen 160 ------------EFYD--EQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEY 225 (381)
T ss_pred ------------HHhc--ccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHH
Confidence 0000 00000000011222233344431 12222222 44542 2222222 233457889999
Q ss_pred eeeceeeccCcccccccCceeEEEEeCCCCCCCcchHHHHHHhhhccchhHHhhhhcc----cCCceeEEecccCeEEee
Q 012880 237 TMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLH----TPGQGYLYNCQTKEFYNL 312 (454)
Q Consensus 237 SlE~G~L~Ls~~aR~~~nIpt~~V~L~~~~~CFG~~~~~lll~~fvGYD~ilmnsl~~----~~gkGYLrN~~S~E~y~l 312 (454)
|++||+|+|++..|+|++||+++++||+++|||||+..|++|+.|+||||+++.+++. ..++||++|.+|+|||+|
T Consensus 226 t~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lhn~q~~ehy~F 305 (381)
T KOG2092|consen 226 TTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLHNTQNTEHYSF 305 (381)
T ss_pred HHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccccccccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999873 688999999999999999
Q ss_pred ecccCCCCCCcccchhhhhhHhHHHHHHHHHHHhhhhhHHhHHhhhhhHHHHHHHHHHh----ccccccchhhhHHHHHH
Q 012880 313 SYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHH----AQHRLPTFQLIFVHVIE 388 (454)
Q Consensus 313 ~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~----~~~~~P~a~Li~~~vi~ 388 (454)
+.++ .++ .+|+.+.. +|.+||+++||+|||+|||||+||+||+++ +.+..|+|||+ +|++
T Consensus 306 va~~-----~g~-asYl~a~a--------~m~ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~apll--tv~l 369 (381)
T KOG2092|consen 306 VADG-----GGV-ASYLEAQA--------EMEIFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPLAPLL--TVFL 369 (381)
T ss_pred eecc-----ccH-HHHHHHhh--------hHhheeccccccccccccceeehHHHHHHHHHhCCCCCcccchHH--HHHH
Confidence 9876 344 78986443 556679999999999999999999999986 46788999998 8999
Q ss_pred HhhhhHHHHHHHHHHHHhhC
Q 012880 389 SLVFVPIMIGILFFLFEFYD 408 (454)
Q Consensus 389 aLVfvpvmiGm~~fm~EFf~ 408 (454)
+|| ||+ |+|||+
T Consensus 370 alv------g~~--~aefF~ 381 (381)
T KOG2092|consen 370 ALV------GED--EAEFFA 381 (381)
T ss_pred HHh------Cch--hhhhcC
Confidence 999 999 999996
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=4.8e-30 Score=254.56 Aligned_cols=187 Identities=68% Similarity=1.092 Sum_probs=177.6
Q ss_pred EeeeceeeccCcccccccCceeEEEEeCCCCCCCcchHHHHHHhhhccchhHHhhhhcccCCceeEEecccCeEEeeecc
Q 012880 236 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 315 (454)
Q Consensus 236 YSlE~G~L~Ls~~aR~~~nIpt~~V~L~~~~~CFG~~~~~lll~~fvGYD~ilmnsl~~~~gkGYLrN~~S~E~y~l~~~ 315 (454)
|.+++|+..+|++++-++|+ +-++.++++++|||++|++++.+.++||||.+++++.+.-+.||.| .+|.|.-
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~fr----- 73 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFR----- 73 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHH-----
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 8888874
Q ss_pred cCCCCCCcccchhhhhhHhHHHHHHHHHHHhhhhhHHhHHhhhhhHHHHHHHHHHhccccccchhhhHHHHHHHhhhhHH
Q 012880 316 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 395 (454)
Q Consensus 316 ~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~~~~P~a~Li~~~vi~aLVfvpv 395 (454)
+.|++++-|+.|++.||+++|+++|+. +++++++.+|+++.||..|.|++++|..++.|++.++++|++.++||+|+
T Consensus 74 -rl~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 74 -RLPEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred -hccchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 456677888999999999999999988 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHhhhcceeeEe
Q 012880 396 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIF 432 (454)
Q Consensus 396 miGm~~fm~EFf~D~~lAFyViliVWladqf~aIsv~ 432 (454)
+||+..+++||++|+..|||+++.+|+|+.|.++|.-
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~ 187 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSER 187 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeeccc
Confidence 9999999999999999999999999999999999864
No 4
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=44.92 E-value=2.4e+02 Score=26.76 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHh
Q 012880 396 MIGILFFLFEFYDDQLLAFLVLILVWLC 423 (454)
Q Consensus 396 miGm~~fm~EFf~D~~lAFyViliVWla 423 (454)
..|+-.++|-+++++..|.-+-+.+|+.
T Consensus 171 ~~sl~~~~S~~~~~~~~a~~~~~~~~~~ 198 (277)
T PF12679_consen 171 FISLGLLISSLFRSSASAILASLGLLFL 198 (277)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 3678888899999998888877766654
No 5
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=41.79 E-value=27 Score=28.81 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.4
Q ss_pred CccchHHHHHHHHhhccC
Q 012880 2 DPEHTFIRVQERFSRVLT 19 (454)
Q Consensus 2 ~~~~~f~rv~~~yar~~~ 19 (454)
+|+|+|.|||...|..-+
T Consensus 27 tpq~~~~RVA~~la~~e~ 44 (83)
T PF00317_consen 27 TPQEMFMRVAMALASAEP 44 (83)
T ss_dssp SHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 699999999999998776
No 6
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=27.17 E-value=1.3e+02 Score=32.21 Aligned_cols=39 Identities=13% Similarity=0.338 Sum_probs=30.3
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhh
Q 012880 377 PTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCE 424 (454)
Q Consensus 377 P~a~Li~~~vi~aLVfvpvmiGm~~fm~EFf~D~~lAFyViliVWlad 424 (454)
-.||+. ++.|++ --.++.++|.++..+-.+|+++-|++-
T Consensus 233 ~~aPlf---~f~a~i------N~~Yi~s~F~~~~p~~y~i~li~~l~a 271 (353)
T PF03268_consen 233 TFAPLF---CFYALI------NAVYIVSSFFSSVPLLYFICLIFNLIA 271 (353)
T ss_pred hHHHHH---HHHHHH------HHHHhhhhhccCCchHHHHHHHHHHHH
Confidence 346663 555555 557899999999999999999999764
No 7
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.39 E-value=75 Score=34.68 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.8
Q ss_pred hHHHHHHHHh-----hccCcchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 012880 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (454)
Q Consensus 6 ~f~rv~~~ya-----r~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~ 47 (454)
+..|+++.+. ..+-+.+|+.-||-+.++||.++|+|..+|++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777774 33348899999999999999999999999975
No 8
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=21.00 E-value=8.2e+02 Score=32.45 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhh
Q 012880 390 LVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCE 424 (454)
Q Consensus 390 LVfvpvmiGm~~fm~EFf~D~~lAFyViliVWlad 424 (454)
++|...+|..-++||-||+...+|=.+..++|++-
T Consensus 738 ~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~ 772 (2272)
T TIGR01257 738 LAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTL 772 (2272)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45666778899999999999999988888888773
No 9
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=20.47 E-value=1.6e+02 Score=20.30 Aligned_cols=23 Identities=30% Similarity=0.584 Sum_probs=18.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHh
Q 012880 21 RVRAYLEYIYLFIAITLFCVLVV 43 (454)
Q Consensus 21 ~vRr~iEfi~Ll~AI~lf~iLvy 43 (454)
|..-.+||+.|+.|+++..+.+-
T Consensus 2 rGQ~SlE~~ili~~vlv~~~i~~ 24 (28)
T PF04021_consen 2 RGQISLEFIILIAAVLVIAIIVI 24 (28)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHH
Confidence 45678999999998887776654
No 10
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=19.94 E-value=79 Score=27.09 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=23.2
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHhh
Q 012880 16 RVLTPRVRAYLEYIYLFIAITLFCVLVVM 44 (454)
Q Consensus 16 r~~~~~vRr~iEfi~Ll~AI~lf~iLvy~ 44 (454)
..+||+.||.++.+..+.+++.+.+++|-
T Consensus 55 ~~l~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (133)
T PF04290_consen 55 DRLPPRLRRILDIIASLLILVFFAVLAWY 83 (133)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45599999999999988777777766653
Done!