Query 012880
Match_columns 454
No_of_seqs 82 out of 84
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fc6_A Nuclear, target of EGR1 20.2 21 0.00071 27.0 -0.1 21 422-451 22-46 (50)
2 1vf5_H Protein PET N; photosyn 13.3 1E+02 0.0035 20.9 1.9 14 342-355 11-24 (29)
3 2nx7_A Nematocyst outer WALL a 10.7 63 0.0022 21.2 0.3 8 50-57 8-15 (28)
4 1q90_N Cytochrome B6F complex 9.3 2.9E+02 0.01 18.9 3.1 14 342-355 13-26 (31)
5 1e0n_A Hypothetical protein; Y 7.4 2.1E+02 0.0072 18.4 1.8 16 294-309 7-22 (27)
6 2kv5_A FST, putative uncharact 7.3 3.1E+02 0.011 19.0 2.6 18 390-407 7-24 (33)
7 1d1r_A Hypothetical 11.4 KD pr 6.8 2.1E+02 0.0071 24.6 2.0 34 45-78 7-42 (116)
8 1i8x_A Granulin-1; two beta-ha 6.3 1.2E+02 0.004 20.5 0.1 10 433-443 20-29 (30)
9 1ews_A RK-1 defensin, alpha-de 6.2 1.2E+02 0.004 20.5 0.1 20 423-442 9-30 (32)
10 2pbi_A Regulator of G-protein 6.2 2E+02 0.0067 29.7 1.7 46 266-314 49-107 (424)
No 1
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=20.21 E-value=21 Score=26.97 Aligned_cols=21 Identities=33% Similarity=0.944 Sum_probs=15.6
Q ss_pred HhhhcceeeEeeeceecceec----cCCCccccc
Q 012880 422 LCELFTLIRIFVYGTWYGCCV----CAAPHSVLL 451 (454)
Q Consensus 422 ladqf~aIsv~~~~~~~~~~~----~~~~~~~~~ 451 (454)
+||+|++ ||-|+ |+..|-+-|
T Consensus 22 iC~~FSa---------yGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 22 ICDNFSA---------YGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp BCSHHHH---------TCCCTTGGGCSSBCCCCC
T ss_pred hhhhccc---------cccCCCCCCCCccccCCC
Confidence 4677744 78898 999997754
No 2
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=13.35 E-value=1e+02 Score=20.85 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=9.5
Q ss_pred HHHHhhhhhHHhHH
Q 012880 342 VFFTTTMSVSFTLR 355 (454)
Q Consensus 342 v~f~fT~~VS~lLR 355 (454)
+|.+||+|+|++.+
T Consensus 11 lmvvftfSlslVVW 24 (29)
T 1vf5_H 11 LLVVFTWSIAMVVW 24 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhheeeeEEEE
Confidence 33445889998865
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=10.69 E-value=63 Score=21.21 Aligned_cols=8 Identities=88% Similarity=1.477 Sum_probs=6.4
Q ss_pred CCCCCccc
Q 012880 50 QQPGCSSE 57 (454)
Q Consensus 50 q~~~Cl~~ 57 (454)
|||||++.
T Consensus 8 qqpgcssa 15 (28)
T 2nx7_A 8 QQPGCSSA 15 (28)
T ss_dssp HSTTCCGG
T ss_pred cCCCcccc
Confidence 78999874
No 4
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=9.30 E-value=2.9e+02 Score=18.87 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=9.6
Q ss_pred HHHHhhhhhHHhHH
Q 012880 342 VFFTTTMSVSFTLR 355 (454)
Q Consensus 342 v~f~fT~~VS~lLR 355 (454)
+|.+||+|+|++.+
T Consensus 13 lmvvfTfSlslVVW 26 (31)
T 1q90_N 13 TCVMFSFSLSLVVW 26 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhheeeEEEEE
Confidence 34455889998765
No 5
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=7.41 E-value=2.1e+02 Score=18.36 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.0
Q ss_pred ccCCceeEEecccCeE
Q 012880 294 HTPGQGYLYNCQTKEF 309 (454)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (454)
.+.|+-|.||..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3678899999999873
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=7.31 E-value=3.1e+02 Score=18.98 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 012880 390 LVFVPIMIGILFFLFEFY 407 (454)
Q Consensus 390 LVfvpvmiGm~~fm~EFf 407 (454)
++-.|+.+|+.--|++-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345788889987777654
No 7
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=6.82 E-value=2.1e+02 Score=24.63 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=12.7
Q ss_pred hhhccCCCC--CcccccCcccCccceEEEEEeecCC
Q 012880 45 HANYVQQPG--CSSEFAGIRMTEAQLIQIKISSAGL 78 (454)
Q Consensus 45 Hi~F~q~~~--Cl~~~~~~~wpr~giLrVeI~~n~~ 78 (454)
+..||+.++ |-+.-....=|++|.++|.+.|+|.
T Consensus 7 ~~vyst~~~~~~~~~~~~~~p~~~~~V~I~~er~gR 42 (116)
T 1d1r_A 7 RLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGR 42 (116)
T ss_dssp ---------------------CCCCEEEEEECCCSS
T ss_pred cEEEeCCCCccCccccccCCCCCCCeEEEEEEeCCC
Confidence 456775444 5443223223578999999998765
No 8
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=6.35 E-value=1.2e+02 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=6.4
Q ss_pred eeceecceecc
Q 012880 433 VYGTWYGCCVC 443 (454)
Q Consensus 433 ~~~~~~~~~~~ 443 (454)
.+| .||||+.
T Consensus 20 ~~G-~WGCCP~ 29 (30)
T 1i8x_A 20 PYG-VWYCSPF 29 (30)
T ss_dssp TTS-CEEEEEC
T ss_pred CCC-CEecCcC
Confidence 344 6788874
No 9
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=6.23 E-value=1.2e+02 Score=20.48 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=12.6
Q ss_pred hhhccee--eEeeeceecceec
Q 012880 423 CELFTLI--RIFVYGTWYGCCV 442 (454)
Q Consensus 423 adqf~aI--sv~~~~~~~~~~~ 442 (454)
||-..+| |--.+..+|-||+
T Consensus 9 cdpwevidgscglfnskyiccr 30 (32)
T 1ews_A 9 CDPWEVIDGSCGLFNSKYICCR 30 (32)
T ss_dssp CCTTEEEEECCSSSSCSEEEEE
T ss_pred cChhheeccccccccceeEEec
Confidence 3444444 3446678999997
No 10
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=6.18 E-value=2e+02 Score=29.69 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCC-cchHHHHHHhhhccchhHHhhhhcc---cCCceeEEeccc---------CeEEeeec
Q 012880 266 HPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLSY 314 (454)
Q Consensus 266 ~~CF-G~~~~~lll~~fvGYD~ilmnsl~~---~~gkGYLrN~~S---------~E~y~l~~ 314 (454)
..|| |..+..||++++ +.++ --++.- --..||++.+.. +-+|||..
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~ 107 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQT 107 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECC
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCC
Confidence 5899 999999999998 5555 233321 234688888754 46789974
Done!