Query 012880
Match_columns 454
No_of_seqs 82 out of 84
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 18:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012880.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012880hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fc6a1 g.66.1.1 (A:8-44) Targ 33.0 3.8 0.00027 27.4 -0.3 18 422-448 15-36 (37)
2 d1i8ya_ g.3.16.1 (A:) N-termin 28.4 6.9 0.0005 24.3 0.4 13 429-442 14-26 (28)
3 d1o6wa1 b.72.1.1 (A:1-29) Spli 9.1 76 0.0055 19.7 1.8 17 293-309 8-24 (29)
4 d1ywia1 b.72.1.1 (A:15-42) Hun 8.2 81 0.0059 19.4 1.7 16 294-309 8-23 (28)
5 d1j8ka_ b.1.2.1 (A:) Fibronect 6.4 73 0.0053 22.1 0.9 40 200-240 1-40 (94)
6 d1ewsa_ g.9.1.1 (A:) Alpha-def 6.2 55 0.004 20.5 0.1 20 423-442 9-30 (32)
7 d1koza_ g.3.6.2 (A:) Grammotox 5.5 1.3E+02 0.0093 19.1 1.6 17 49-66 10-28 (36)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 5.3 1.4E+02 0.01 22.0 2.1 9 393-401 9-17 (158)
9 d2dk1a1 b.72.1.1 (A:7-44) WW d 4.5 1.5E+02 0.011 19.1 1.4 16 294-309 8-23 (38)
10 d2f2ha2 b.30.5.11 (A:1-247) Pu 4.4 2.9E+02 0.021 23.9 3.8 15 63-77 59-73 (247)
No 1
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.99 E-value=3.8 Score=27.39 Aligned_cols=18 Identities=39% Similarity=1.163 Sum_probs=12.9
Q ss_pred HhhhcceeeEeeeceecceec----cCCCcc
Q 012880 422 LCELFTLIRIFVYGTWYGCCV----CAAPHS 448 (454)
Q Consensus 422 ladqf~aIsv~~~~~~~~~~~----~~~~~~ 448 (454)
+||+|+| ||-|+ |+++|-
T Consensus 15 iC~~FsA---------yGWCP~G~qCp~SHd 36 (37)
T d2fc6a1 15 ICDNFSA---------YGWCPLGPQCPQSHD 36 (37)
T ss_dssp BCSHHHH---------TCCCTTGGGCSSBCC
T ss_pred hhhhhhh---------ccccCCCCCCcccCc
Confidence 4777755 78886 778774
No 2
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=28.38 E-value=6.9 Score=24.34 Aligned_cols=13 Identities=38% Similarity=1.104 Sum_probs=8.7
Q ss_pred eeEeeeceecceec
Q 012880 429 IRIFVYGTWYGCCV 442 (454)
Q Consensus 429 Isv~~~~~~~~~~~ 442 (454)
-++--||-|| ||+
T Consensus 14 c~lspygvw~-c~p 26 (28)
T d1i8ya_ 14 CSLSPYGVWY-CSP 26 (28)
T ss_dssp EEECTTSCEE-EET
T ss_pred EeccCcccEE-ecc
Confidence 3556688888 654
No 3
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.11 E-value=76 Score=19.68 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.0
Q ss_pred cccCCceeEEecccCeE
Q 012880 293 LHTPGQGYLYNCQTKEF 309 (454)
Q Consensus 293 ~~~~gkGYLrN~~S~E~ 309 (454)
++.+|+=|-||.+|||-
T Consensus 8 ~~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 8 KDASGRIYYYNTLTKKS 24 (29)
T ss_dssp ECTTCCEEEEETTTTEE
T ss_pred ECCCCCEEEeECCCCCE
Confidence 34688999999999983
No 4
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=81 Score=19.36 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.5
Q ss_pred ccCCceeEEecccCeE
Q 012880 294 HTPGQGYLYNCQTKEF 309 (454)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (454)
..+|+=|-||.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 5
>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.40 E-value=73 Score=22.14 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=23.2
Q ss_pred ccCccccccchhhcccccchhhhhhhccccCCceEEEeeec
Q 012880 200 NLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEK 240 (454)
Q Consensus 200 nld~~k~~~~~~~d~l~~~~v~~~e~~~~~~e~~yeYSlE~ 240 (454)
|+|-|..+++.... -++-.++|-.-......|.++|....
T Consensus 1 ~~d~P~~l~v~~vt-~~sv~l~W~~p~~~~~~y~i~~~~~~ 40 (94)
T d1j8ka_ 1 NIDRPKGLAFTDVD-VDSIKIAWESPQGQVSRYRVTYSSPE 40 (94)
T ss_dssp CCCCCCCCEEEEEE-TTEEEEECCCCSSCCSCEEEEEEETT
T ss_pred CCCCCCCCEEEEec-CCEEEEEEeCCCccccceEEEEEeec
Confidence 67888776654322 24566788543334455667776543
No 6
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=6.23 E-value=55 Score=20.48 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=12.6
Q ss_pred hhhccee--eEeeeceecceec
Q 012880 423 CELFTLI--RIFVYGTWYGCCV 442 (454)
Q Consensus 423 adqf~aI--sv~~~~~~~~~~~ 442 (454)
||-..+| |--.+..+|-||+
T Consensus 9 cdpwevidgscglfnskyiccr 30 (32)
T d1ewsa_ 9 CDPWEVIDGSCGLFNSKYICCR 30 (32)
T ss_dssp CCTTEEEEECCSSSSCSEEEEE
T ss_pred cChhheeccccccccceeEEec
Confidence 3444444 3446678999997
No 7
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=5.53 E-value=1.3e+02 Score=19.14 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=11.9
Q ss_pred cCCCCCccccc--CcccCcc
Q 012880 49 VQQPGCSSEFA--GIRMTEA 66 (454)
Q Consensus 49 ~q~~~Cl~~~~--~~~wpr~ 66 (454)
+|.+.|-.|+. . .|||+
T Consensus 10 sqtsdccphlacks-kwprn 28 (36)
T d1koza_ 10 SQTSDCCPHLACKS-KWPRN 28 (36)
T ss_dssp CSSSSSCTTEESCC-SSSSS
T ss_pred ccccccCcchhhcc-cCCce
Confidence 46677877773 4 49987
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.28 E-value=1.4e+02 Score=21.96 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 012880 393 VPIMIGILF 401 (454)
Q Consensus 393 vpvmiGm~~ 401 (454)
|.++||+++
T Consensus 9 ViaIIgILa 17 (158)
T d2pila_ 9 VIAIVGILA 17 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 9
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=1.5e+02 Score=19.15 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 012880 294 HTPGQGYLYNCQTKEF 309 (454)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (454)
...|+=|-||..|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 4578999999999983
No 10
>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=2.9e+02 Score=23.88 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=12.5
Q ss_pred cCccceEEEEEeecC
Q 012880 63 MTEAQLIQIKISSAG 77 (454)
Q Consensus 63 wpr~giLrVeI~~n~ 77 (454)
-|.+|+|||+|+-..
T Consensus 59 sp~~~virV~i~h~~ 73 (247)
T d2f2ha2 59 SPQEGIVGVRIEHFQ 73 (247)
T ss_dssp CSSTTEEEEEEESCT
T ss_pred ecCCCEEEEEEEeCC
Confidence 589999999998653
Done!